Psyllid ID: psy14542

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-
Protein Sequence
MQLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR
Secondary Structure (PSIPRED)
cEEEEEEccccEEEEcccccEEEEccccEEEEEEEEcccccccEEEEEccEEEccccccEEEEccccccccEEEEEEEEEcccEEEEEEEEEEccccEEEEcccEEEEEccccEEEEEEEcccccccEEEEEEccEEEccccccEEEEEEEEEcccccEEEEEcccEEEEEccEEEEEcccccccccEEEEEEEEEccccEEEEEEEEEEEEEEEEcEEccccEEEEcccEEEEEccccEEEEEEEEEEcccEEEEEEccEEccccccEEEEccEEEEccccccccEEEEEEEEEccccEEEEEEEEEEEcccccccccEEEEEEcccccHHHcccccEEEccEEEEEcccccEEEEEEEEEEcccEEEcc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccEEEEcccccEEEEcccEEEEEEEEccccccEEEEEEEcccEEEcccccEEEEEEcccccccEEEEEEEEccccEEEEEEEEEEccccEEcccccEEEEEccEEEEEEEEccccccEEEEEEEcccEcccccccEEEEEccccccccEEEEEEEcccEEEccccEEEEEEccccccccEEEEEEEEccccccEcccEEEEEEEEEEcEcccccEEEcccccEEEEEccEEEEEEEEccccccEEEEEEcccEccccccEEEcccEEEEEEcccccccEEEEEEEEccccEEEEEEEEEEccccccccccccEEccccccccccccccccccccccEEEEEccEEEEEEEEccccccEEEEc
Coil and Loop (DISEMBL)
MQLFIQVKSslsiemspsgqvvVDVGHRIelhcrvspkrLSSAKAWLKDGlvlrrnsdevLVLDRvqredagmyqchvsadddsaQMSAQVILGGELVEIASSNQVVVDVGHRIelhcrvspkrLSSAKAWLKDGlvlrrnsdevLVLDRVqredagmyqchiedgkyhmlssgELIIHqvdesdryrsyqcrgvnkltgasllsvnrgrlsLTENKRLLSAAKMFEKHRilnvkkdesvilpcsaqgnplptikwykqdspveesdRIQRIGSSLsishveesdsgvwncvannsegqdKMQLFIQYAHgkyhmlssGELIIHQVDEKNKRLLSAAKMFEKHRilnvkkdesvilpcsaqgnplptikyr
Flexible Loop (DISEMBL)
MQLFIQVKsslsiemspsgQVVVDVGHRIELHcrvspkrlssakawlkdglvlrrnsdevlvLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELhcrvspkrlssakawlkdglvlrrnsdevlvLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVnkltgasllsvnrgrlslTENKRLLSAAKMFEKHRIlnvkkdesvilpcsaqgnplptikWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRIlnvkkdesvilpcsaqgnplptikyr
Low Complexity Region (SEG)
MQLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR
Disordered region (IsUnstruct)
*******************QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSAD****QMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYK****************************GVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPC*************
Disordered Region (DISOPRED)
MQLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEE*DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR
Disordered Region (DISEMBL)
MQLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQ*********IQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR
Disordered Region (DISPRO)
MQLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	371	2.2.26 [Sep-21-2011]
Q9VS29	2074	Down syndrome cell adhesi	no	N/A	0.506	0.090	0.309	8e-19
O94779	1100	Contactin-5 OS=Homo sapie	yes	N/A	0.563	0.19	0.287	8e-15
Q90W79	1027	Contactin-5 OS=Gallus gal	no	N/A	0.563	0.203	0.263	9e-15
O60469	2012	Down syndrome cell adhesi	no	N/A	0.622	0.114	0.261	1e-14
A2AJ76	5100	Hemicentin-2 OS=Mus muscu	yes	N/A	0.881	0.064	0.255	3e-14
Q8NDA2	5065	Hemicentin-2 OS=Homo sapi	no	N/A	0.549	0.040	0.270	6e-14
P68500	1098	Contactin-5 OS=Mus muscul	no	N/A	0.657	0.222	0.227	6e-13
Q6WRI0	2623	Immunoglobulin superfamil	no	N/A	0.800	0.113	0.257	1e-12
Q8VHZ8	2013	Down syndrome cell adhesi	yes	N/A	0.622	0.114	0.250	1e-12
Q9ERC8	2013	Down syndrome cell adhesi	no	N/A	0.622	0.114	0.250	1e-12

>sp|Q9VS29|DSCL_DROME Down syndrome cell adhesion molecule-like protein Dscam2 OS=Drosophila melanogaster GN=Dscam2 PE=2 SV=3

 Score = 95.1 bits (235), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 98/194 (50%), Gaps = 6/194 (3%)

Query: 145 VLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLL 204
           V V+  V      +Y     DGK+H+L +GEL+IH + ESD  +S++CR +++LT   ++
Sbjct: 162 VRVVSWVHEPAIYIYPSLQGDGKFHLLPTGELLIHNLQESDESQSFRCRSMHRLTRQVVV 221

Query: 205 SVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDS--- 261
           S +  RL +  ++ ++S + + E    + V +DE  +L C AQG P P   W+  +    
Sbjct: 222 S-SPTRLRINSHRGIISPS-VVEHTAHVQVSQDEGAVLLCVAQGCPSPEYSWFTHNGAGP 279

Query: 262 -PVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGE 320
            PV    R++ +G  L+I  V   DSGV+ C A N  G+   +L +  A      +S   
Sbjct: 280 LPVLSGPRVRLLGPILAIEAVTGEDSGVYKCTAGNVGGEASAELRLTVATPIQVEISPNV 339

Query: 321 LIIHQVDEKNKRLL 334
           L +H       R L
Sbjct: 340 LSVHMGGTAEFRCL 353

Cell adhesion molecule.
Drosophila melanogaster (taxid: 7227)

>sp|O94779|CNTN5_HUMAN Contactin-5 OS=Homo sapiens GN=CNTN5 PE=2 SV=2

 Score = 81.6 bits (200), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 114/254 (44%), Gaps = 45/254 (17%)

Query: 55  RNSDEVLVLDRVQREDAGMYQCHV--SADDDSAQMSAQVILGGELVEIASSNQVVVDVGH 112
           R S  VL +  VQ +DAG+Y+C    S   +S +   QV      VE  +  Q+  D G 
Sbjct: 348 RKSQAVLEIPNVQLDDAGIYECRAENSRGKNSFRGQLQVYTYPHWVEKLNDTQL--DSGS 405

Query: 113 RIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS 172
            +   C+ + K   + + WLK+G+ L   S       RV+                  + 
Sbjct: 406 PLRWECKATGKPRPTYR-WLKNGVPLSPQS-------RVE------------------MV 439

Query: 173 SGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF---EKH 229
           +G L+IH V++SD    YQC   NK           G +  +   ++L++A  F   +  
Sbjct: 440 NGVLMIHNVNQSDA-GMYQCLAENKY----------GAIYASAELKILASAPTFALNQLK 488

Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG-SSLSISHVEESDSGV 288
           + + V KD+ V++ C  QG+P PTI W K D  V E+ RI  +   SL I +  +SD G 
Sbjct: 489 KTIIVTKDQEVVIECKPQGSPKPTISWKKGDRAVRENKRIAILPDGSLRILNASKSDEGK 548

Query: 289 WNCVANNSEGQDKM 302
           + C   N  G  ++
Sbjct: 549 YVCRGENVFGSAEI 562

Contactins mediate cell surface interactions during nervous system development. Has some neurite outgrowth-promoting activity in the cerebral cortical neurons but not in hippocampal neurons. Probably involved in neuronal activity in the auditory system.

Homo sapiens (taxid: 9606)

>sp|Q90W79|CNTN5_CHICK Contactin-5 OS=Gallus gallus GN=CNTN5 PE=1 SV=1

 Score = 81.6 bits (200), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 105/254 (41%), Gaps = 45/254 (17%)

Query: 55  RNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRI 114
           R S  VL +  VQ EDAGMY+C             Q+ +      +   N   +D G ++
Sbjct: 275 RKSQAVLEIPNVQLEDAGMYECKAENSRGRNVFRGQLQVYTYPQWVEKLNDTELDSGEQL 334

Query: 115 ELHCRVSPKRLSSAKAWLKDGLVLRRNS-----DEVLVLDRVQREDAGMYQCHIEDGKYH 169
              C+ + K   + + WLK+G+ L   S     + VL++  V   DAGMYQC  E+    
Sbjct: 335 RWECKATGKPRPTYR-WLKNGVPLWPQSRIEMINSVLMIRTVNISDAGMYQCLAENKYGT 393

Query: 170 MLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKH 229
           + +S EL I                   L  A    +N+ R                   
Sbjct: 394 IYASAELKI-------------------LASAPTFPLNQMR------------------- 415

Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG-SSLSISHVEESDSGV 288
           + + + K + V++ C  Q +P PTI W K D  + ES R+  +   SL I +  +SD G 
Sbjct: 416 KTIIITKGQEVVIECKPQASPKPTITWKKGDKALRESKRVTILPQGSLRILNASKSDEGR 475

Query: 289 WNCVANNSEGQDKM 302
           ++C   N  G  ++
Sbjct: 476 YSCRGVNVFGSAEI 489

Contactins mediate cell surface interactions during nervous system development. May contribute to the formation of somatotopic maps of cerebellar afferents during the development of the nervous system.

Gallus gallus (taxid: 9031)

>sp|O60469|DSCAM_HUMAN Down syndrome cell adhesion molecule OS=Homo sapiens GN=DSCAM PE=1 SV=2

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 128/295 (43%), Gaps = 64/295 (21%)

Query: 26  GHRIELHCRVSPKRLSSAKAWLKDGLVLR-----RNSDEVLVLDRVQREDAGMYQCHVSA 80
           G R+EL C+         + WLKD + L      + +   L+++ ++  D+G Y C VS 
Sbjct: 239 GQRVELPCKALGHPEPDYR-WLKDNMPLELSGRFQKTVTGLLIENIRPSDSGSYVCEVSN 297

Query: 81  DDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR 140
              +A++  ++ +   L    S  +V   VG ++ L C V+        +W ++G +L  
Sbjct: 298 RYGTAKVIGRLYVKQPLKATISPRKVKSSVGSQVSLSCSVTGTE-DQELSWYRNGEILNP 356

Query: 141 NSD--------EVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQC 192
             +        E L++D + + D G YQC +   K   LS+ + +  QV   D       
Sbjct: 357 GKNVRITGINHENLIMDHMVKSDGGAYQCFVRKDK---LSAQDYV--QVVLED------- 404

Query: 193 RGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP 252
            G  K+  A              +++++S A              E V L C+ +G PLP
Sbjct: 405 -GTPKIISAF-------------SEKVVSPA--------------EPVSLMCNVKGTPLP 436

Query: 253 TIKWYKQDSPVEE--SDRIQRIGSS-------LSISHVEESDSGVWNCVANNSEG 298
           TI W   D P+ +  S RI ++ +S       L+IS  +  D GV+ C ANNS G
Sbjct: 437 TITWTLDDDPILKGGSHRISQMITSEGNVVSYLNISSSQVRDGGVYRCTANNSAG 491

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38.

Homo sapiens (taxid: 9606)

>sp|A2AJ76|HMCN2_MOUSE Hemicentin-2 OS=Mus musculus GN=Hmcn2 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 110/430 (25%), Positives = 168/430 (39%), Gaps = 103/430 (23%)

Query: 17   PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVL---------RRNSDEVLVLDRV 66
            P   V V++G  + L CR +  R      W + DG  L         +R+S  VLV +RV
Sbjct: 792  PPQDVTVELGKSVFLTCRAT-GRPPPIVTWRRGDGQALEPGRGSRTGQRDSG-VLVFERV 849

Query: 67   QREDAGMYQCHVSADDDSAQMSAQVILGGEL-VEIASSNQVV-VDVGHRIELHCRVSPKR 124
              ED   Y C        AQ  A++++ G    +IA+S  VV V  G  + L C +   R
Sbjct: 850  SLEDQAPYVCEARNVFGKAQAEARLVVTGHAPPQIANSASVVRVLEGQPVSLTCVILAGR 909

Query: 125  LSSAKAWLKDGLVL------RRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELII 178
                + WLK G  L         +D  L LDR  +EDAG Y C   +         EL++
Sbjct: 910  PLPERRWLKAGSPLPPGNRHAVRADGSLHLDRALQEDAGRYSCVATNVAGSQHRDVELVV 969

Query: 179  -----------HQVDESDRYRSYQC-------------RGVNKLTGASLLSVNR-GRLSL 213
                       H V       S  C             +  N LT +   SV+R G L +
Sbjct: 970  QVPPRIHPTSTHHVTNEGVPASLPCIASGVPTPKITWTKETNALTTSGHYSVSRNGTLVI 1029

Query: 214  TE--------------NKRLLSAAKMF----EKHRI-------------LNVKKDESVIL 242
             +              N    S+ +M+     K  I             + VK  E V L
Sbjct: 1030 VQPSPQDAGAYVCTATNSVGFSSQEMWLSVNTKPMIKMNGSQAVDVPLRVTVKAGEEVTL 1089

Query: 243  PCSAQGNPLPTIKWYKQDSP-VEESDRIQRIGS-SLSISHVEESDSGVWNCVANNSEGQD 300
             C AQG+P P + W K  +P +  ++R + + S SL ++  +  D+G++ C A+N  G  
Sbjct: 1090 DCEAQGSPTPLLTWTKDANPLLPVTNRYELLPSGSLRLAQAQVGDNGLYGCTASNPAG-- 1147

Query: 301  KMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSA 360
                    A  + ++L               R+    ++    R+L V   E++ L C A
Sbjct: 1148 --------ATSRRYVL---------------RVQVPPQVQPGPRVLKVLAGEALDLNCVA 1184

Query: 361  QGNPLPTIKY 370
            +GNP P + +
Sbjct: 1185 EGNPQPQLNW 1194

Mus musculus (taxid: 10090)

>sp|Q8NDA2|HMCN2_HUMAN Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=2

 Score = 78.6 bits (192), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 110/244 (45%), Gaps = 40/244 (16%)

Query: 66   VQREDAGMYQCHVSADDDSAQMSAQV-ILGGELVEIASSNQVVVDVGHRIELHCRVSPKR 124
            V RED+G Y C         Q  + V +    +++  + + +V  VG  I+L C V    
Sbjct: 4187 VSREDSGTYVCWAENRVGRTQAVSFVHVKEAPVLQGEAFSYLVEPVGGSIQLDCVVRGDP 4246

Query: 125  LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184
            +     W+KDGL LR +                    H+     H L +G L IH+ +  
Sbjct: 4247 VPDIH-WIKDGLPLRGS--------------------HLR----HQLQNGSLTIHRTERD 4281

Query: 185  DRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFE-KHRILNVKKDESVILP 243
            D  R YQC   N++  A  + +            +L +A +F+ + + + V+  + V L 
Sbjct: 4282 DAGR-YQCLAENEMGVAKKVVI-----------LVLQSAPVFQVEPQDMTVRSGDDVALR 4329

Query: 244  CSAQGNPLPTIKWYKQDSPVEESDRIQRI-GSSLSISHVEESDSGVWNCVANNSEGQDKM 302
            C A G P PTI+W +   P+  S R++ +   SL + +VE  D+G ++CVA+N  G    
Sbjct: 4330 CQATGEPTPTIEWLQAGQPLRASRRLRTLPDGSLWLENVETGDAGTYDCVAHNLLGSATA 4389

Query: 303  QLFI 306
            + F+
Sbjct: 4390 RAFL 4393

Homo sapiens (taxid: 9606)

>sp|P68500|CNTN5_MOUSE Contactin-5 OS=Mus musculus GN=Cntn5 PE=1 SV=2

 Score = 75.5 bits (184), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 129/330 (39%), Gaps = 86/330 (26%)

Query: 61  LVLDRVQREDAGMYQCHV-SADDDSAQMSAQVILG-------GEL---VEIASSNQVVVD 109
           L + +VQ  D G Y C V +A  ++  +S    L        GE    +E+     V   
Sbjct: 253 LYISKVQTSDVGSYICLVKNAVTNARVLSPPTPLTLRNDGVMGEYEPKIEVHFPFTVTAA 312

Query: 110 VGHRIELHCRVSPKRLSSAKAWLK-DGLVLR----RNSDEVLVLDRVQREDAGMYQCHIE 164
            G  +++ C      + +   W+K +G +      R S  VL +  +Q +DAG+Y+C  E
Sbjct: 313 KGTTVKMECFALGNPVPTI-TWMKVNGYIPSKSRLRKSQAVLEIPNLQLDDAGIYECTAE 371

Query: 165 DGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAK 224
           +                           RG N           RG+L      ++ +   
Sbjct: 372 N--------------------------SRGKNSF---------RGQL------QIFTYPH 390

Query: 225 MFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEES 284
             +K     +     +   C A G P PT +W K  +P+    R+  +   L+I  V +S
Sbjct: 391 WVQKLNDTQLDSGSPLQWECKATGKPRPTYRWLKNGAPLLPQSRVDTVNGILAIQSVNQS 450

Query: 285 DSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHR 344
           D+G++ C+A N  G                + +S EL          ++L++   FE ++
Sbjct: 451 DAGMYQCLAENKYGA---------------IYASAEL----------KILASPPSFELNQ 485

Query: 345 I---LNVKKDESVILPCSAQGNPLPTIKYR 371
           +   + V KD  V++ C  QG+P P I +R
Sbjct: 486 VKKSIIVTKDRGVLIECEPQGSPKPAISWR 515

Contactins mediate cell surface interactions during nervous system development. Has some neurite outgrowth-promoting activity in the cerebral cortical neurons but not in hippocampal neurons (By similarity). Involved in neuronal activity in the auditory system.

Mus musculus (taxid: 10090)

>sp|Q6WRI0|IGS10_HUMAN Immunoglobulin superfamily member 10 OS=Homo sapiens GN=IGSF10 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 96/373 (25%), Positives = 144/373 (38%), Gaps = 76/373 (20%)

Query: 20   QVVVDVGHRIELHCRVSPKRLSSAKAW-LKDGLVLRRNS----------DEVLVLDRVQR 68
            ++ V  G  +EL CR +  R S    W L +  V+  +S          D  LVL  +  
Sbjct: 1754 EITVHSGSTVELKCR-AEGRPSPTVTWILANQTVVSESSQGSRQAVVTVDGTLVLHNLSI 1812

Query: 69   EDAGMYQCHVS--ADDDSAQMSAQVILGGELVEIASSNQVVVDV-GHRIELHCRVSPKRL 125
             D G Y+C  S     DS  +  QVI    ++ +    QV+V   G  ++L C       
Sbjct: 1813 YDRGFYKCVASNPGGQDSLLVKIQVIAAPPVI-LEQRRQVIVGTWGESLKLPCTAKGTPQ 1871

Query: 126  SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESD 185
             S    L DG  ++                         + K  + S+G L I  +  SD
Sbjct: 1872 PSVYWVLSDGTEVK--------------------PLQFTNSKLFLFSNGTLYIRNLASSD 1911

Query: 186  RYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCS 245
            R  +Y+C   +  TG+      R  + LT  +R+ S        +   V   + ++L CS
Sbjct: 1912 R-GTYECIATSS-TGSE-----RRVVMLTMEERVTSPRIEAASQKRTEVNFGDKLLLNCS 1964

Query: 246  AQGNPLPTIKWYKQDSPVEESDRIQRIGS--------SLSISHVEESDSGVWNCVANNSE 297
            A G P P I W      V   D+  R+GS        SL I  V E DSGV+ CVA N  
Sbjct: 1965 ATGEPKPQIMWRLPSKAV--VDQQHRVGSWIHVYPNGSLFIGSVTEKDSGVYLCVARNKM 2022

Query: 298  GQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILP 357
            G D                    LI+  V  + K      K + + ++L+ K  +   + 
Sbjct: 2023 GDD--------------------LILMHVSLRLKPAKIDHKQYFRKQVLHGKDFQ---VD 2059

Query: 358  CSAQGNPLPTIKY 370
            C A G+P+P I +
Sbjct: 2060 CKASGSPVPEISW 2072

May be involved in the maintenance of osteochondroprogenitor cells pool.

Homo sapiens (taxid: 9606)

>sp|Q8VHZ8|DSCAM_RAT Down syndrome cell adhesion molecule homolog OS=Rattus norvegicus GN=Dscam PE=1 SV=1

 Score = 74.7 bits (182), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 125/295 (42%), Gaps = 64/295 (21%)

Query: 26  GHRIELHCRVSPKRLSSAKAWLKDGLVLR-----RNSDEVLVLDRVQREDAGMYQCHVSA 80
           G R+EL C+         + WLKD + L      + +   L+++  +  D+G Y C VS 
Sbjct: 239 GQRVELPCKALGHPEPDYR-WLKDNMPLELSGRFQKTVTGLLIENSRPSDSGSYVCEVSN 297

Query: 81  DDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR 140
              +A++  ++ +   L    S  +V   VG ++ L C V+        +W ++G +L  
Sbjct: 298 RYGTAKVIGRLYVKQPLKATISPRKVKSSVGSQVSLSCSVTGNE-DQELSWYRNGEILNP 356

Query: 141 NSD--------EVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQC 192
             +          L++D + + D G YQC +   K   LS+ + +  QV   D       
Sbjct: 357 GKNVRITGLNHANLIMDHMVKSDGGAYQCFVRKDK---LSAQDYV--QVVLED------- 404

Query: 193 RGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP 252
            G  K+  A              +++++S A              E V L C+ +G PLP
Sbjct: 405 -GTPKIISAF-------------SEKVVSPA--------------EPVSLVCNVKGTPLP 436

Query: 253 TIKWYKQDSPVEESD--RIQRIGSS-------LSISHVEESDSGVWNCVANNSEG 298
           T+ W   D P+ +    RI ++ +S       L+IS  +  D GV+ C ANNS G
Sbjct: 437 TVTWTLDDDPILKGSGHRISQMITSEGNVVSYLNISSSQVRDGGVYRCTANNSAG 491

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38 (By similarity). Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC.

Rattus norvegicus (taxid: 10116)

>sp|Q9ERC8|DSCAM_MOUSE Down syndrome cell adhesion molecule homolog OS=Mus musculus GN=Dscam PE=1 SV=1

 Score = 74.7 bits (182), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 125/295 (42%), Gaps = 64/295 (21%)

Query: 26  GHRIELHCRVSPKRLSSAKAWLKDGLVLR-----RNSDEVLVLDRVQREDAGMYQCHVSA 80
           G R+EL C+         + WLKD + L      + +   L+++  +  D+G Y C VS 
Sbjct: 239 GQRVELPCKALGHPEPDYR-WLKDNMPLELSGRFQKTVTGLLIENSRPSDSGSYVCEVSN 297

Query: 81  DDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR 140
              +A++  ++ +   L    S  +V   VG ++ L C V+        +W ++G +L  
Sbjct: 298 RYGTAKVIGRLYVKQPLKATISPRKVKSSVGSQVSLSCSVTGNE-DQELSWYRNGEILNP 356

Query: 141 NSD--------EVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQC 192
             +          L++D + + D G YQC +   K   LS+ + +  QV   D       
Sbjct: 357 GKNVRITGLNHANLIMDHMVKSDGGAYQCFVRKDK---LSAQDYV--QVVLED------- 404

Query: 193 RGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP 252
            G  K+  A              +++++S A              E V L C+ +G PLP
Sbjct: 405 -GTPKIISAF-------------SEKVVSPA--------------EPVSLVCNVKGTPLP 436

Query: 253 TIKWYKQDSPVEESD--RIQRIGSS-------LSISHVEESDSGVWNCVANNSEG 298
           T+ W   D P+ +    RI ++ +S       L+IS  +  D GV+ C ANNS G
Sbjct: 437 TVTWTLDDDPILKGSGHRISQMITSEGNVVSYLNISSSQVRDGGVYRCTANNSAG 491

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
380026513	549	PREDICTED: Down syndrome cell adhesion m	0.520	0.351	0.352	1e-23
332024824	1968	Down syndrome cell adhesion molecule-lik	0.520	0.098	0.347	1e-22
328789768	2163	PREDICTED: Down syndrome cell adhesion m	0.371	0.063	0.424	2e-22
115646214	506	IP05371p [Drosophila melanogaster]	0.433	0.318	0.382	3e-22
350396480	2165	PREDICTED: Down syndrome cell adhesion m	0.371	0.063	0.417	3e-22
340710644	2164	PREDICTED: Down syndrome cell adhesion m	0.371	0.063	0.417	5e-22
195325943	1531	GM25036 [Drosophila sechellia] gi|194118	0.433	0.105	0.382	1e-21
195167540	944	GL22542 [Drosophila persimilis] gi|19410	0.433	0.170	0.370	1e-21
442630978	1935	down syndrome cell adhesion molecule 4,	0.433	0.083	0.382	2e-21
221330980	1874	down syndrome cell adhesion molecule 4,	0.433	0.085	0.382	2e-21

>gi|380026513|ref|XP_003696995.1| PREDICTED: Down syndrome cell adhesion molecule-like protein Dscam2-like [Apis florea]

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 116/207 (56%), Gaps = 14/207 (6%)

Query: 109 DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHI 163
           DV  R  ++ R  P+ +     +L + +++R N      D V +   +Q     +Y   +
Sbjct: 95  DVTVRAVVNQRYDPE-VQCPGGFLGNNVLMRCNVPSFVRDHVTITSWLQEPSFNIYPSTM 153

Query: 164 EDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAA 223
            DGKYHMLSSGEL+I  +   D  R+Y+CR  ++LT  +++S N GRL LTE +  +   
Sbjct: 154 GDGKYHMLSSGELMILNITREDAERTYRCRTHHRLTQETVVSSNVGRLQLTEIRSTM-PP 212

Query: 224 KMFEKHRILNVKKDESVILPCSAQGNPLPTIKWY----KQDSPVEESD--RIQRIGSSLS 277
            + EK    + +  ++V++PC A GNP P  +WY    +++ PVE+S    + R G SL 
Sbjct: 213 MINEKVVYTSARLKDTVVIPCVAYGNPTPANRWYYNRNQREEPVEDSSGHYVVRDG-SLI 271

Query: 278 ISHVEESDSGVWNCVANNSEGQDKMQL 304
           I  V+ESD G + C A+NSEG + M++
Sbjct: 272 IQGVQESDGGSYMCTASNSEGSESMEV 298

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024824|gb|EGI65012.1| Down syndrome cell adhesion molecule-like protein [Acromyrmex echinatior]

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 118/207 (57%), Gaps = 14/207 (6%)

Query: 109 DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHI 163
           DV  R  ++ R  P+ + +   +L + +++R N      D V V   +Q     +Y   +
Sbjct: 95  DVTVRAVVNQRYDPE-VQNPSGFLGNNVLMRCNVPSFVRDHVTVTSWLQEPVFNIYPSTM 153

Query: 164 EDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAA 223
            DGKYHML +GEL+I  +  SD   +Y+CR  ++LT  +++S N GRL LTE +  +   
Sbjct: 154 GDGKYHMLPTGELMIINITRSDAQMTYRCRTHHRLTQDTVVSSNVGRLQLTEIRGSMPPI 213

Query: 224 KMFEKHRILNVKKDESVILPCSAQGNPLPTIKWY----KQDSPVEESD--RIQRIGSSLS 277
            + EK   ++ +  ++V++PC A  NP PT +WY    +++ P+EES    + R G SL 
Sbjct: 214 -INEKLVYMSARLKDTVVIPCVAYANPTPTNRWYYNRNQREEPIEESSGHYVVRDG-SLI 271

Query: 278 ISHVEESDSGVWNCVANNSEGQDKMQL 304
           I  VEESD+G + C A+NSEG + +++
Sbjct: 272 IQSVEESDAGSYMCTASNSEGSETLEI 298

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328789768|ref|XP_392207.4| PREDICTED: Down syndrome cell adhesion molecule-like protein CG42256-like [Apis mellifera]

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/146 (42%), Positives = 93/146 (63%), Gaps = 8/146 (5%)

Query: 165 DGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAK 224
           DGKYHMLSSGEL+I  +   D  R+Y+CR  ++LT  +++S N GRL LTE +  +    
Sbjct: 198 DGKYHMLSSGELMILNITREDAERTYRCRTHHRLTQETVVSSNVGRLQLTEIRSTMPPM- 256

Query: 225 MFEKHRILNVKKDESVILPCSAQGNPLPTIKWY----KQDSPVEESD--RIQRIGSSLSI 278
           + EK   ++ +  ++V++PC A GNP PT +WY    +++ PVE+S    + R G SL I
Sbjct: 257 INEKVVYMSARLKDTVVIPCVAYGNPTPTNRWYYNRNQREEPVEDSSGHYVVRDG-SLII 315

Query: 279 SHVEESDSGVWNCVANNSEGQDKMQL 304
             V+ESD G + C A+NSEG + M++
Sbjct: 316 QGVQESDGGSYMCTASNSEGSESMEV 341

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|115646214|gb|ABJ16979.1| IP05371p [Drosophila melanogaster]

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 100/170 (58%), Gaps = 9/170 (5%)

Query: 142 SDEVLVLDRVQREDAGMYQCHIED--GKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLT 199
           S+ VLV   VQ  D GM+     D  GKY +LS+GEL I+    +D Y+SY CR VN+LT
Sbjct: 81  SEFVLVTAWVQ--DTGMHLYPNTDIGGKYTVLSNGELYINNAGPNDAYKSYTCRTVNRLT 138

Query: 200 GASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQ 259
           G   +S   GR+ +TE K ++      EKH + +V  +    LPC AQG+P+PT +W+K+
Sbjct: 139 GEVQISTYPGRIIVTEPKGMVQPRINVEKHSMRHVVLNGQTTLPCIAQGHPVPTYRWFKE 198

Query: 260 DS----PVEESDRIQRIGSS-LSISHVEESDSGVWNCVANNSEGQDKMQL 304
           ++    P++ S+RI  + +  L I+     DSG + C  NN+ G++ +Q+
Sbjct: 199 ENEQLLPLQLSERITIVSAGLLKITKARLEDSGKYLCWVNNTAGEETIQV 248

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350396480|ref|XP_003484566.1| PREDICTED: Down syndrome cell adhesion molecule-like protein CG42256-like [Bombus impatiens]

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 61/146 (41%), Positives = 94/146 (64%), Gaps = 8/146 (5%)

Query: 165 DGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAK 224
           DGKYHMLSSGEL+I  +   D  R+Y+CR  ++LT  +++S N GRL LTE +  +    
Sbjct: 193 DGKYHMLSSGELMILNITREDAERTYRCRTHHRLTQETVVSSNVGRLQLTEIRSTMPPM- 251

Query: 225 MFEKHRILNVKKDESVILPCSAQGNPLPTIKWY----KQDSPVEESD--RIQRIGSSLSI 278
           + EK   ++ +  +++++PC A GNP PT +WY    +++ PVE+S    + R G SL I
Sbjct: 252 INEKVVYMSARLKDTIVIPCVAYGNPTPTNRWYYNRNQREEPVEDSTGHYVVRDG-SLII 310

Query: 279 SHVEESDSGVWNCVANNSEGQDKMQL 304
             V+ESD+G + C A+NSEG + M++
Sbjct: 311 QGVQESDAGSYMCSASNSEGSESMEV 336

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710644|ref|XP_003393897.1| PREDICTED: Down syndrome cell adhesion molecule-like protein CG42256-like [Bombus terrestris]

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 61/146 (41%), Positives = 94/146 (64%), Gaps = 8/146 (5%)

Query: 165 DGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAK 224
           DGKYHMLSSGEL+I  +   D  R+Y+CR  ++LT  +++S N GRL LTE +  +    
Sbjct: 192 DGKYHMLSSGELMILNITREDAERTYRCRTHHRLTQETVVSSNVGRLQLTEIRSSMPPM- 250

Query: 225 MFEKHRILNVKKDESVILPCSAQGNPLPTIKWY----KQDSPVEESD--RIQRIGSSLSI 278
           + EK   ++ +  +++++PC A GNP PT +WY    +++ PVE+S    + R G SL I
Sbjct: 251 INEKVVYMSARLKDTIVIPCVAYGNPTPTNRWYYNRNQREEPVEDSTGHYVVRDG-SLII 309

Query: 279 SHVEESDSGVWNCVANNSEGQDKMQL 304
             V+ESD+G + C A+NSEG + M++
Sbjct: 310 QGVQESDAGSYMCSASNSEGSESMEV 335

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195325943|ref|XP_002029690.1| GM25036 [Drosophila sechellia] gi|194118633|gb|EDW40676.1| GM25036 [Drosophila sechellia]

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 100/170 (58%), Gaps = 9/170 (5%)

Query: 142 SDEVLVLDRVQREDAGMYQCHIED--GKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLT 199
           S+ VLV   VQ  D GM+     D  GKY +LS+GEL I+    +D Y+SY CR VN+LT
Sbjct: 17  SEFVLVTAWVQ--DTGMHLYPNTDIGGKYTVLSNGELYINNAGPNDAYKSYTCRTVNRLT 74

Query: 200 GASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQ 259
           G   +S   GR+ +TE K ++      EKH + +V  +    LPC AQG+P+PT +W+K+
Sbjct: 75  GEVQISTYPGRIIVTEPKGMVQPRINVEKHSMRHVVLNGQTTLPCIAQGHPVPTYRWFKE 134

Query: 260 DS----PVEESDRIQRIGSS-LSISHVEESDSGVWNCVANNSEGQDKMQL 304
           ++    P++ S+RI  + +  L I+     DSG + C  NN+ G++ +Q+
Sbjct: 135 ENEQLLPLQLSERITIVSAGLLKITKARLEDSGKYLCWVNNTAGEETIQV 184

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195167540|ref|XP_002024591.1| GL22542 [Drosophila persimilis] gi|194107996|gb|EDW30039.1| GL22542 [Drosophila persimilis]

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 100/170 (58%), Gaps = 9/170 (5%)

Query: 142 SDEVLVLDRVQREDAGMYQCHIED--GKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLT 199
           S+ V+V   VQ  D GM+     D  GKY +LS+GEL I+    +D Y++Y CR VN+LT
Sbjct: 17  SEFVMVTAWVQ--DTGMHLYPNTDIGGKYTVLSNGELYINNAGPNDAYKTYTCRTVNRLT 74

Query: 200 GASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQ 259
           G   +S   GR+ +TE K ++      EKH + +V  +    LPC AQG+P+PT +W+K+
Sbjct: 75  GEIQISTYPGRIIVTEPKGMVQPRINVEKHSMRHVVLNGQTTLPCIAQGHPVPTYRWFKE 134

Query: 260 DS----PVEESDRIQRIGSS-LSISHVEESDSGVWNCVANNSEGQDKMQL 304
           ++    P++ S+RI  + +  L I+     DSG + C  NN+ G++ +Q+
Sbjct: 135 ENEQLLPLQLSERITIVSAGLLKITKARLEDSGKYLCWVNNTAGEETIQV 184

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442630978|ref|NP_001261571.1| down syndrome cell adhesion molecule 4, isoform I [Drosophila melanogaster] gi|442630980|ref|NP_001261572.1| down syndrome cell adhesion molecule 4, isoform J [Drosophila melanogaster] gi|440215478|gb|AGB94266.1| down syndrome cell adhesion molecule 4, isoform I [Drosophila melanogaster] gi|440215479|gb|AGB94267.1| down syndrome cell adhesion molecule 4, isoform J [Drosophila melanogaster]

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 100/170 (58%), Gaps = 9/170 (5%)

Query: 142 SDEVLVLDRVQREDAGMYQCHIED--GKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLT 199
           S+ VLV   VQ  D GM+     D  GKY +LS+GEL I+    +D Y+SY CR VN+LT
Sbjct: 155 SEFVLVTAWVQ--DTGMHLYPNTDIGGKYTVLSNGELYINNAGPNDAYKSYTCRTVNRLT 212

Query: 200 GASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQ 259
           G   +S   GR+ +TE K ++      EKH + +V  +    LPC AQG+P+PT +W+K+
Sbjct: 213 GEVQISTYPGRIIVTEPKGMVQPRINVEKHSMRHVVLNGQTTLPCIAQGHPVPTYRWFKE 272

Query: 260 DS----PVEESDRIQRIGSS-LSISHVEESDSGVWNCVANNSEGQDKMQL 304
           ++    P++ S+RI  + +  L I+     DSG + C  NN+ G++ +Q+
Sbjct: 273 ENEQLLPLQLSERITIVSAGLLKITKARLEDSGKYLCWVNNTAGEETIQV 322

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221330980|ref|NP_001137909.1| down syndrome cell adhesion molecule 4, isoform H [Drosophila melanogaster] gi|220902515|gb|ACL83264.1| down syndrome cell adhesion molecule 4, isoform H [Drosophila melanogaster]

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 100/170 (58%), Gaps = 9/170 (5%)

Query: 142 SDEVLVLDRVQREDAGMYQCHIED--GKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLT 199
           S+ VLV   VQ  D GM+     D  GKY +LS+GEL I+    +D Y+SY CR VN+LT
Sbjct: 155 SEFVLVTAWVQ--DTGMHLYPNTDIGGKYTVLSNGELYINNAGPNDAYKSYTCRTVNRLT 212

Query: 200 GASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQ 259
           G   +S   GR+ +TE K ++      EKH + +V  +    LPC AQG+P+PT +W+K+
Sbjct: 213 GEVQISTYPGRIIVTEPKGMVQPRINVEKHSMRHVVLNGQTTLPCIAQGHPVPTYRWFKE 272

Query: 260 DS----PVEESDRIQRIGSS-LSISHVEESDSGVWNCVANNSEGQDKMQL 304
           ++    P++ S+RI  + +  L I+     DSG + C  NN+ G++ +Q+
Sbjct: 273 ENEQLLPLQLSERITIVSAGLLKITKARLEDSGKYLCWVNNTAGEETIQV 322

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
FB|FBgn0263219	1918	Dscam4 "Down syndrome cell adh	0.433	0.083	0.382	2.6e-24
ZFIN|ZDB-GENE-030131-9765	2925	hmcn2 "hemicentin 2" [Danio re	0.431	0.054	0.306	1.1e-16
FB|FBgn0033159	2037	Dscam "Down syndrome cell adhe	0.371	0.067	0.360	2.2e-16
UNIPROTKB|Q8NDA2	5065	HMCN2 "Hemicentin-2" [Homo sap	0.339	0.024	0.3	1.2e-15
MGI|MGI:2677838	5100	Hmcn2 "hemicentin 2" [Mus musc	0.318	0.023	0.305	3e-14
UNIPROTKB|F1NY98	1994	DSCAM "Uncharacterized protein	0.371	0.069	0.279	6e-08
UNIPROTKB|F6UXF9	3263	F6UXF9 "Uncharacterized protei	0.358	0.040	0.283	1.1e-14
ZFIN|ZDB-GENE-080807-4	3422	hspg2 "heparan sulfate proteog	0.390	0.042	0.292	2e-14
UNIPROTKB|O60469	2012	DSCAM "Down syndrome cell adhe	0.382	0.070	0.285	2.6e-09
UNIPROTKB|F1PEU6	5106	F1PEU6 "Uncharacterized protei	0.358	0.026	0.283	2.8e-14

FB|FBgn0263219 Dscam4 "Down syndrome cell adhesion molecule 4" [Drosophila melanogaster (taxid:7227)]

 Score = 277 (102.6 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
 Identities = 65/170 (38%), Positives = 100/170 (58%)

Query:   142 SDEVLVLDRVQREDAGMYQCHIED--GKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLT 199
             S+ VLV   VQ  D GM+     D  GKY +LS+GEL I+    +D Y+SY CR VN+LT
Sbjct:   155 SEFVLVTAWVQ--DTGMHLYPNTDIGGKYTVLSNGELYINNAGPNDAYKSYTCRTVNRLT 212

Query:   200 GASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQ 259
             G   +S   GR+ +TE K ++      EKH + +V  +    LPC AQG+P+PT +W+K+
Sbjct:   213 GEVQISTYPGRIIVTEPKGMVQPRINVEKHSMRHVVLNGQTTLPCIAQGHPVPTYRWFKE 272

Query:   260 DS----PVEESDRIQRIGSSL-SISHVEESDSGVWNCVANNSEGQDKMQL 304
             ++    P++ S+RI  + + L  I+     DSG + C  NN+ G++ +Q+
Sbjct:   273 ENEQLLPLQLSERITIVSAGLLKITKARLEDSGKYLCWVNNTAGEETIQV 322

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0007155 "cell adhesion" evidence=ISS

GO:0042802 "identical protein binding" evidence=ISS

ZFIN|ZDB-GENE-030131-9765 hmcn2 "hemicentin 2" [Danio rerio (taxid:7955)]

 Score = 153 (58.9 bits), Expect = 1.1e-16, Sum P(3) = 1.1e-16
 Identities = 58/189 (30%), Positives = 89/189 (47%)

Query:     5 IQVKSSLSIEMS-PSGQVVVDVGHRIELHCR---VSPKRLSSAKAWLKDG--LVLRRN-- 56
             +QV++  ++E + P+ QV V  G  + L C    V P  LS    WLKDG  L L RN  
Sbjct:  1102 LQVQAPPAVERTEPTEQVAVVQGSSVTLTCEARGVPPPTLS----WLKDGQPLSLHRNLL 1157

Query:    57 --SDEV-LVLDRVQREDAGMYQCHVS--ADDDSAQMSAQVILGGELVEIASSNQVVVDVG 111
                 E   +L  V   DAG+Y C  S  A   +   +  V+   ++    S  + ++ V 
Sbjct:  1158 LDGQETRFLLSDVGPSDAGLYSCVASNQAGSSTKTFNLTVLEPPKITGSLSPEEQLIAVD 1217

Query:   112 HRIELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQCHI-- 163
               +EL C ++        +WLKDG  ++ N        ++L +++VQ EDAG+Y C    
Sbjct:  1218 SLLELEC-IATGLPPPTLSWLKDGRPIQDNMAIIERDGQLLRINKVQVEDAGLYTCLASS 1276

Query:   164 ---EDGKYH 169
                EDG+ H
Sbjct:  1277 PAGEDGRNH 1285

GO:0004888 "transmembrane signaling receptor activity" evidence=IEA

GO:0007596 "blood coagulation" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0043589 "skin morphogenesis" evidence=IGI

GO:0090497 "mesenchymal cell migration" evidence=IGI

GO:0035122 "embryonic medial fin morphogenesis" evidence=IGI

GO:0030198 "extracellular matrix organization" evidence=IGI

FB|FBgn0033159 Dscam "Down syndrome cell adhesion molecule" [Drosophila melanogaster (taxid:7227)]

 Score = 232 (86.7 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
 Identities = 53/147 (36%), Positives = 85/147 (57%)

Query:   165 DGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAK 224
             DGKY +L SGEL I +V   D Y+SYQCR  ++LTG + LS  +GRL +TE    + A +
Sbjct:   190 DGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGSV-APR 248

Query:   225 MFEKHRILN--VKKDESVILPCSAQGNPLPTIKWYK------QDSPVEESDRIQRIGSSL 276
             + +K    +  +++D ++ + C AQ  P+P  +WYK      +   V  +DR++++  +L
Sbjct:   249 VNKKDGFSHDSIRQDRTIAIFCPAQAYPVPFYRWYKFIEGTTRKQAVVLNDRVKQVSGTL 308

Query:   277 SISHVEESDSGVWNCVANNSEGQDKMQ 303
              I      DSG + CV NNS G + ++
Sbjct:   309 IIKDAVVEDSGKYLCVVNNSVGGESVE 335

GO:0005887 "integral to plasma membrane" evidence=ISM;ISS

GO:0007411 "axon guidance" evidence=IGI;IMP;TAS

GO:0008046 "axon guidance receptor activity" evidence=IMP;NAS

GO:0007422 "peripheral nervous system development" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0006909 "phagocytosis" evidence=IMP

GO:0051635 "bacterial cell surface binding" evidence=IDA

GO:0048666 "neuron development" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=IMP;IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

GO:0021551 "central nervous system morphogenesis" evidence=IMP

GO:0048846 "axon extension involved in axon guidance" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

UNIPROTKB|Q8NDA2 HMCN2 "Hemicentin-2" [Homo sapiens (taxid:9606)]

 Score = 168 (64.2 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
 Identities = 42/140 (30%), Positives = 72/140 (51%)

Query:   169 HMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFE- 227
             H L +G L IH+ +  D  R YQC   N++  A  + +            +L +A +F+ 
Sbjct:  4266 HQLQNGSLTIHRTERDDAGR-YQCLAENEMGVAKKVVI-----------LVLQSAPVFQV 4313

Query:   228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-GSSLSISHVEESDS 286
             + + + V+  + V L C A G P PTI+W +   P+  S R++ +   SL + +VE  D+
Sbjct:  4314 EPQDMTVRSGDDVALRCQATGEPTPTIEWLQAGQPLRASRRLRTLPDGSLWLENVETGDA 4373

Query:   287 GVWNCVANNSEGQDKMQLFI 306
             G ++CVA+N  G    + F+
Sbjct:  4374 GTYDCVAHNLLGSATARAFL 4393

GO:0005509 "calcium ion binding" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

MGI|MGI:2677838 Hmcn2 "hemicentin 2" [Mus musculus (taxid:10090)]

 Score = 147 (56.8 bits), Expect = 3.0e-14, Sum P(3) = 3.0e-14
 Identities = 41/134 (30%), Positives = 70/134 (52%)

Query:   168 YHMLSSGELIIHQVDESDRYRSYQCRGVNKL-TGASLLSVNRGRLSLTENKRLLSAAKMF 226
             +  L +G L I +    D  R YQC  VN++ T   +++V            +L +A +F
Sbjct:  4299 HFQLQNGSLTILRTKMDDAGR-YQCLAVNEMGTVKKVVTV------------VLQSAPVF 4345

Query:   227 E-KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-GSSLSISHVEES 284
             + + + + V+    V L C A G P+PTI+W +   P++   +++ +   SL + HVE  
Sbjct:  4346 QVEPQDVTVRSGVDVELRCRATGEPVPTIEWLRAGRPLQAGRKLRALPDGSLWLEHVEAG 4405

Query:   285 DSGVWNCVANNSEG 298
             D+GV+ CVA+N  G
Sbjct:  4406 DAGVYECVAHNHLG 4419

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IDA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0005604 "basement membrane" evidence=IDA

GO:0005938 "cell cortex" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0030054 "cell junction" evidence=IDA

GO:0050896 "response to stimulus" evidence=IEA

UNIPROTKB|F1NY98 DSCAM "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 146 (56.5 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
 Identities = 40/143 (27%), Positives = 69/143 (48%)

Query:   167 KYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF 226
             ++ + S+G L I  V   D   +Y+C   ++ TG +  S N  RL +++     SA  + 
Sbjct:   158 RFLITSTGALYILDVQNEDGLYNYRCITRHRYTGETRQS-NSARLFVSDPAN--SAPSIL 214

Query:   227 EKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDS 286
             +          + V LPC A G+P P  +W K + P E   R ++  + L I +   SDS
Sbjct:   215 DGFDHRKAMAGQRVELPCKASGHPTPKYRWLKDNIPWEPDSRFRQTVTGLLIENTRPSDS 274

Query:   287 GVWNCVANNSEGQDKM--QLFIQ 307
             G + C   N+ G  +M  +L+++
Sbjct:   275 GNYVCEVWNNYGTAEMIGRLYVK 297

GO:0005886 "plasma membrane" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0042327 "positive regulation of phosphorylation" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0070593 "dendrite self-avoidance" evidence=IEA

UNIPROTKB|F6UXF9 F6UXF9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 154 (59.3 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
 Identities = 42/148 (28%), Positives = 68/148 (45%)

Query:   169 HMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFE- 227
             H L +G L I +  E D    YQC   N++     + +            +L +A +F  
Sbjct:  2504 HRLQNGSLSIRRT-EMDDAGQYQCLAENEMGAVEKVVI-----------LVLQSAPVFSV 2551

Query:   228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-GSSLSISHVEESDS 286
             K + + V+  E V L C A G P PT++W +   P+  S R++ +   SL +  VE  D+
Sbjct:  2552 KPQDVTVRPREDVALQCQASGEPAPTVEWLRAGQPLRASQRLRTLPDGSLWLQRVEAGDA 2611

Query:   287 GVWNCVANNSEGQDKMQLFIQYAHGKYH 314
             G + CVA+N  G    +  +    G+ H
Sbjct:  2612 GTYECVAHNLLGSTTARAILS-VRGEPH 2638

GO:0005509 "calcium ion binding" evidence=IEA

ZFIN|ZDB-GENE-080807-4 hspg2 "heparan sulfate proteoglycan 2" [Danio rerio (taxid:7955)]

 Score = 154 (59.3 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
 Identities = 48/164 (29%), Positives = 85/164 (51%)

Query:     9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---SDEVLVLDR 65
             +SLS+++SP  +V   +G  +E  C            WLK+G VL  N    D +L ++ 
Sbjct:  2438 ASLSVKVSPQVEVKA-LGSAVEFTCAAKG---GLQIEWLKEGGVLPPNHHIKDGILRIEN 2493

Query:    66 VQREDAGMYQCHVSADDDSAQMSAQVILGG---ELVEIASSNQVVVDVGHRIELHCRV-- 120
             +++ + G+Y C V++  + AQ SA++++       + + +S Q V+ VG+ +E  C    
Sbjct:  2494 LEQSNEGIYTCRVTSQFEHAQDSAKLLIQALPKVKINVRTSVQTVM-VGNSVEFECHAIG 2552

Query:   121 SPK---RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 161
              P+   R S   A L D + +R N   +L +D+V   D+G Y+C
Sbjct:  2553 DPEPTVRWSKVGAPLPDHVEIRGN---ILRIDQVFESDSGQYRC 2593

GO:0007519 "skeletal muscle tissue development" evidence=IMP

GO:0001525 "angiogenesis" evidence=IMP

UNIPROTKB|O60469 DSCAM "Down syndrome cell adhesion molecule" [Homo sapiens (taxid:9606)]

 Score = 164 (62.8 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
 Identities = 42/147 (28%), Positives = 73/147 (49%)

Query:   163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSA 222
             +   ++ + S+G L I  V   D   +Y+C   ++ TG +  S N  RL +++     SA
Sbjct:   168 VSGSRFLITSTGALYIKDVQNEDGLYNYRCITRHRYTGETRQS-NSARLFVSDPAN--SA 224

Query:   223 AKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVE 282
               + +          + V LPC A G+P P  +W K + P+E S R Q+  + L I ++ 
Sbjct:   225 PSILDGFDHRKAMAGQRVELPCKALGHPEPDYRWLKDNMPLELSGRFQKTVTGLLIENIR 284

Query:   283 ESDSGVWNCVANNSEGQDKM--QLFIQ 307
              SDSG + C  +N  G  K+  +L+++
Sbjct:   285 PSDSGSYVCEVSNRYGTAKVIGRLYVK 311

GO:0007155 "cell adhesion" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0042327 "positive regulation of phosphorylation" evidence=IDA

GO:0007162 "negative regulation of cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS;TAS

GO:0030426 "growth cone" evidence=ISS

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=ISS

GO:0030424 "axon" evidence=ISS

GO:0016020 "membrane" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007399 "nervous system development" evidence=TAS

UNIPROTKB|F1PEU6 F1PEU6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 154 (59.3 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
 Identities = 42/148 (28%), Positives = 68/148 (45%)

Query:   169 HMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFE- 227
             H L +G L I +  E D    YQC   N++     + +            +L +A +F  
Sbjct:  4306 HRLQNGSLSIRRT-EMDDAGQYQCLAENEMGAVEKVVI-----------LVLQSAPVFSV 4353

Query:   228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-GSSLSISHVEESDS 286
             K + + V+  E V L C A G P PT++W +   P+  S R++ +   SL +  VE  D+
Sbjct:  4354 KPQDVTVRPREDVALQCQASGEPAPTVEWLRAGQPLRASQRLRTLPDGSLWLQRVEAGDA 4413

Query:   287 GVWNCVANNSEGQDKMQLFIQYAHGKYH 314
             G + CVA+N  G    +  +    G+ H
Sbjct:  4414 GTYECVAHNLLGSTTARAILS-VRGEPH 4440

GO:0005509 "calcium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	371
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	2e-17
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	3e-16
smart00410	85	smart00410, IG_like, Immunoglobulin like	4e-14
smart00409	85	smart00409, IG, Immunoglobulin	4e-14
cd00096	74	cd00096, Ig, Immunoglobulin domain	3e-13
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	7e-13
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	2e-11
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	2e-11
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	3e-11
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	1e-10
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	2e-10
pfam00047	62	pfam00047, ig, Immunoglobulin domain	4e-10
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	4e-10
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	8e-10
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	1e-09
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	2e-09
smart00410	85	smart00410, IG_like, Immunoglobulin like	3e-09
smart00409	85	smart00409, IG, Immunoglobulin	3e-09
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	3e-09
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	3e-09
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	6e-09
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	1e-08
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	3e-08
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	3e-08
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	4e-08
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	8e-08
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	9e-08
cd05849	93	cd05849, Ig1_Contactin-1, First Ig domain of conta	2e-07
smart00410	85	smart00410, IG_like, Immunoglobulin like	3e-07
smart00409	85	smart00409, IG, Immunoglobulin	3e-07
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	3e-07
cd05848	94	cd05848, Ig1_Contactin-5, First Ig domain of conta	3e-07
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	3e-07
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	5e-07
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	7e-07
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	9e-07
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	1e-06
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	1e-06
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	2e-06
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	3e-06
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	3e-06
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	4e-06
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	4e-06
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	6e-06
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	9e-06
cd05868	76	cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-lik	9e-06
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	1e-05
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	1e-05
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	1e-05
cd05864	70	cd05864, Ig2_VEGFR-2, Second immunoglobulin (Ig)-l	2e-05
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	3e-05
cd04983	109	cd04983, IgV_TCR_alpha_like, Immunoglobulin (Ig) v	3e-05
cd04979	89	cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like	5e-05
cd05894	86	cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma	6e-05
cd04976	71	cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik	9e-05
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	1e-04
cd05850	94	cd05850, Ig1_Contactin-2, First Ig domain of conta	1e-04
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	2e-04
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	3e-04
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	5e-04
cd00096	74	cd00096, Ig, Immunoglobulin domain	6e-04
cd05855	79	cd05855, Ig_TrkB_d5, Fifth domain (immunoglobulin-	7e-04
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	0.001
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	0.001
pfam07686	114	pfam07686, V-set, Immunoglobulin V-set domain	0.001
cd05735	88	cd05735, Ig8_DSCAM, Eight immunoglobulin (Ig) doma	0.001
cd05756	94	cd05756, Ig1_IL1R_like, First immunoglobulin (Ig)-	0.001
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	0.001
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	0.002
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	0.002
cd04975	101	cd04975, Ig4_SCFR_like, Fourth immunoglobulin (Ig)	0.002
cd05870	98	cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-lik	0.002
cd00096	74	cd00096, Ig, Immunoglobulin domain	0.003
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	0.003

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 75.1 bits (185), Expect = 2e-17
 Identities = 30/62 (48%), Positives = 39/62 (62%)

Query: 237 DESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNS 296
            +SV L C A+GNP+P I W K   P+ ES+R    GS+L+I  V   DSG++ CVA NS
Sbjct: 2   GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGSTLTIKSVSLEDSGLYTCVAENS 61

Query: 297 EG 298
            G
Sbjct: 62  AG 63

Length = 63

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 72.7 bits (179), Expect = 3e-16
 Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 4/74 (5%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ----RIGSSLSISHVEESDSG 287
           + V++ ES    C+  G+P PT+ W+K   P+  SDR +        +L+IS+V+  D G
Sbjct: 10  VEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQPDDEG 69

Query: 288 VWNCVANNSEGQDK 301
            + CVA NS G+ +
Sbjct: 70  KYTCVATNSAGEAE 83

Length = 90

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 67.1 bits (164), Expect = 4e-14
 Identities = 31/74 (41%), Positives = 39/74 (52%), Gaps = 5/74 (6%)

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQD-SPVEESDRIQRIGS----SLSISHVEESDSGV 288
           VK+ ESV L C A G+P P + WYKQ    + ES R     S    +L+IS+V   DSG 
Sbjct: 6   VKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGT 65

Query: 289 WNCVANNSEGQDKM 302
           + C A NS G    
Sbjct: 66  YTCAATNSSGSASS 79

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 67.1 bits (164), Expect = 4e-14
 Identities = 31/74 (41%), Positives = 39/74 (52%), Gaps = 5/74 (6%)

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQD-SPVEESDRIQRIGS----SLSISHVEESDSGV 288
           VK+ ESV L C A G+P P + WYKQ    + ES R     S    +L+IS+V   DSG 
Sbjct: 6   VKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGT 65

Query: 289 WNCVANNSEGQDKM 302
           + C A NS G    
Sbjct: 66  YTCAATNSSGSASS 79

Length = 85

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 64.0 bits (155), Expect = 3e-13
 Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 240 VILPCSAQGNPLPTIKWYKQDSPVEE--------SDRIQRIGSSLSISHVEESDSGVWNC 291
           V L C A G P PTI W K   P+          S       S+L+IS+V   DSG + C
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 292 VANNSEGQD 300
           VA+NS G  
Sbjct: 61  VASNSAGTV 69

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 63.7 bits (155), Expect = 7e-13
 Identities = 28/73 (38%), Positives = 39/73 (53%)

Query: 236 KDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANN 295
           K ++V L C A GNP+P IKW K D  +  S  I   G+ L I +++  D G + C A N
Sbjct: 15  KGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAEN 74

Query: 296 SEGQDKMQLFIQY 308
            +G+D  Q  I  
Sbjct: 75  IKGKDTHQGRIYV 87

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 59.3 bits (143), Expect = 2e-11
 Identities = 26/71 (36%), Positives = 40/71 (56%)

Query: 236 KDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANN 295
           K ++V L C A GNP+P I+W K   P+  +  I   G+ L I +++  D G + C A N
Sbjct: 15  KGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAEN 74

Query: 296 SEGQDKMQLFI 306
            +G+DK Q  +
Sbjct: 75  IKGKDKHQARV 85

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 58.9 bits (142), Expect = 2e-11
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 229 HRILNVKKDESVILPCSAQGNPLP-TIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSG 287
               +V     V L CSA+G P P TI WY+  S    S  +   GS+L++S V   DSG
Sbjct: 7   SPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGSTLTLSSVTSEDSG 66

Query: 288 VWNCVANN 295
            + CVA+N
Sbjct: 67  TYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 58.6 bits (142), Expect = 3e-11
 Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 233 NVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCV 292
            V + E V L CSA GNP P   WYK   P+  S             +V   DSG + CV
Sbjct: 10  VVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNG------FFTPNVSAEDSGTYTCV 63

Query: 293 ANNSEGQ 299
           A+N  G 
Sbjct: 64  ASNGGGG 70

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 57.4 bits (139), Expect = 1e-10
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 238 ESVILPCSA-QGNPLPTIKWYKQDSPVEESDRIQRI--GSSLSISHVEESDSGVWNCVAN 294
           E  +L CS  +G+P PT+ W K   P+   +   RI    +L I+   +SD G + CVA 
Sbjct: 12  EMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVAT 71

Query: 295 NSEG 298
           N  G
Sbjct: 72  NMVG 75

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 56.6 bits (136), Expect = 2e-10
 Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ----RIGSSLS 277
            A +  K R L V + ES    C   G P PT+ W ++   +  S R Q       S+  
Sbjct: 3   PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFE 62

Query: 278 ISHVEESDSGVWNCVANNSEGQDKMQL 304
           IS V+ SD G +  V  NSEG+ + Q 
Sbjct: 63  ISKVQMSDEGNYTVVVENSEGKQEAQF 89

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 54.8 bits (132), Expect = 4e-10
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 238 ESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR-----IGSSLSISHVEESDSGVWNCV 292
            SV L CS  G P   + W+K+   +EES  +          +L+IS+V   DSG + CV
Sbjct: 2   SSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTCV 61

Query: 293 A 293
            
Sbjct: 62  V 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 55.7 bits (134), Expect = 4e-10
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query: 244 CSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEG 298
           C A GNP P  +W K   P+   +RI+     L I+ +  SDSG++ CVA N  G
Sbjct: 21  CKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHG 75

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 54.3 bits (130), Expect = 8e-10
 Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 3/58 (5%)

Query: 244 CSAQGNPLPTIKWYKQDSPVEES--DRIQRIGS-SLSISHVEESDSGVWNCVANNSEG 298
           C+A GNP P I W+K   PV+ +   RI+++ S +L I + EESD G + CVA NS G
Sbjct: 5   CAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAG 62

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 54.6 bits (131), Expect = 1e-09
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 237 DESVILPCSAQGNPLPTIKWYKQDSPVEESDR---IQRIGSSLSISHVEESDSGVWNCVA 293
            +SV L C A G P PT+ W K   P+E  +        GS ++I  V++ D   + C+A
Sbjct: 18  GQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIA 77

Query: 294 NNSEGQ 299
            N  G+
Sbjct: 78  ENKAGE 83

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 238 ESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI---GSSLSISHVEESDSGVWNCVAN 294
           E+  L C A+G P PTI W     P+EE     R    G +L +S+V+ +D+ V+ C A+
Sbjct: 2   ETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNAS 61

Query: 295 NSEG 298
           N  G
Sbjct: 62  NVHG 65

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 53.3 bits (128), Expect = 3e-09
 Identities = 21/85 (24%), Positives = 26/85 (30%), Gaps = 11/85 (12%)

Query: 18 SGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGL----------VLRRNSDEVLVLDRVQ 67
             V V  G  + L C  S         W K G           V R  S   L +  V 
Sbjct: 1  PPSVTVKEGESVTLSCEASGSPPPEVT-WYKQGGKLLAESGRFSVSRSGSTSTLTISNVT 59

Query: 68 REDAGMYQCHVSADDDSAQMSAQVI 92
           ED+G Y C  +    SA     + 
Sbjct: 60 PEDSGTYTCAATNSSGSASSGTTLT 84

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 53.3 bits (128), Expect = 3e-09
 Identities = 21/85 (24%), Positives = 26/85 (30%), Gaps = 11/85 (12%)

Query: 18 SGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGL----------VLRRNSDEVLVLDRVQ 67
             V V  G  + L C  S         W K G           V R  S   L +  V 
Sbjct: 1  PPSVTVKEGESVTLSCEASGSPPPEVT-WYKQGGKLLAESGRFSVSRSGSTSTLTISNVT 59

Query: 68 REDAGMYQCHVSADDDSAQMSAQVI 92
           ED+G Y C  +    SA     + 
Sbjct: 60 PEDSGTYTCAATNSSGSASSGTTLT 84

Length = 85

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 53.2 bits (128), Expect = 3e-09
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 239 SVILPCSAQGNPLPTIKWYKQDSPVEESDRI-----QRIGSSLSISHVEESDSGVWNCVA 293
           +V L C A GNP PTI W K   P ++  RI     ++   +L +  V  SDSG + C+ 
Sbjct: 11  TVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIV 70

Query: 294 NNSEGQ 299
            N  G 
Sbjct: 71  ENKYGS 76

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 53.2 bits (128), Expect = 3e-09
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 237 DESVILPCSAQGNPLPTIKWYKQ--DSPVEESDRIQRIGSSLSISHVEES-DSGVWNCVA 293
           +  V L C A+G+P PT +W     +   E   R   +G +L IS+  ++ D+G + C+A
Sbjct: 19  EGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLA 78

Query: 294 NNSEG 298
           +N  G
Sbjct: 79  SNIVG 83

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 51.6 bits (124), Expect = 6e-09
 Identities = 19/60 (31%), Positives = 28/60 (46%)

Query: 240 VILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQ 299
           V   C   G+P+PT+ W K+D  + +         SL I +V   D G + C A N  G+
Sbjct: 1   VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGK 60

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 240 VILPCSAQGNPLPTIKWYKQDSPVEESDRI--QRIGSSLSISHVEESDSGVWNCVANNSE 297
           ++L C A+G P P I W K    +  +DR   +    +L I +V E D G + C A+NS 
Sbjct: 1   LLLECIAEGLPTPEISWIKIGGELP-ADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSL 59

Query: 298 G 298
           G
Sbjct: 60  G 60

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 49.9 bits (119), Expect = 3e-08
 Identities = 28/61 (45%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 240 VILPCSAQGNPLPTIKWYKQDSPVEESDR--IQRIGSSLSISHVEESDSGVWNCVANNSE 297
           V +PCSAQG+P PTI W K    V ES +  I   G  L+I  V  +D G + CVA N+ 
Sbjct: 1   VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEG-YLAIRDVGVADQGRYECVARNTI 59

Query: 298 G 298
           G
Sbjct: 60  G 60

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 50.6 bits (121), Expect = 3e-08
 Identities = 32/78 (41%), Positives = 40/78 (51%), Gaps = 11/78 (14%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVE---ESDRIQRI----GS--SLSISH-- 280
           L V K +   L C A+G P PTI+W K   P+E   +  R  RI    GS   L + H  
Sbjct: 11  LIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGR 70

Query: 281 VEESDSGVWNCVANNSEG 298
              SD GV+ CVA+NS G
Sbjct: 71  KGRSDEGVYVCVAHNSLG 88

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 49.5 bits (119), Expect = 4e-08
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 247 QGNPLPTIKWYKQDSPVEESDRIQ----RIGSSLSISHVEESDSGVWNCVANNSEGQDK 301
            G P PT+ W K   P++ S R+Q       +SL I + E SDSG +     N  G+  
Sbjct: 9   SGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKS 67

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 48.8 bits (116), Expect = 8e-08
 Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 9/73 (12%)

Query: 240 VILPCSAQGNPLPTIKW--------YKQDSPVEESDRIQRI-GSSLSISHVEESDSGVWN 290
           V L CSA+G P PTI W         +       + RIQ +   SL I HV E DSG + 
Sbjct: 1   VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYL 60

Query: 291 CVANNSEGQDKMQ 303
           C  +N  G D  +
Sbjct: 61  CKVSNDVGADASK 73

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 48.4 bits (115), Expect = 9e-08
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 240 VILPCSAQGNPLPTIKWYKQDSPV-EESDRIQRIGSSLSISHVEESDSGVWNCVANNSEG 298
           ++L C A+G P P + W + D P+     +      +L + +V ESD G + C A NSEG
Sbjct: 1   LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEG 60

Query: 299 QDK 301
             +
Sbjct: 61  SAR 63

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1

 Score = 48.0 bits (114), Expect = 2e-07
 Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 6/80 (7%)

Query: 225 MFEKHRILNVKKDES----VILPCSAQGNPLPTIKWYKQDSPVE-ESDRIQRIGSSLSIS 279
           +FE+  I  +  +ES    V + C A+ NP P  KW K +  ++  +DR   +G +L I+
Sbjct: 3   VFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVIN 62

Query: 280 HVEES-DSGVWNCVANNSEG 298
           + ++  D+G + C+ +N  G
Sbjct: 63  NPDKYKDAGRYVCIVSNIYG 82

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 93

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 47.1 bits (112), Expect = 3e-07
 Identities = 19/76 (25%), Positives = 23/76 (30%), Gaps = 11/76 (14%)

Query: 103 SNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGL----------VLRRNSDEVLVLDRVQ 152
              V V  G  + L C  S         W K G           V R  S   L +  V 
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVT-WYKQGGKLLAESGRFSVSRSGSTSTLTISNVT 59

Query: 153 REDAGMYQCHIEDGKY 168
            ED+G Y C   +   
Sbjct: 60  PEDSGTYTCAATNSSG 75

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 47.1 bits (112), Expect = 3e-07
 Identities = 19/76 (25%), Positives = 23/76 (30%), Gaps = 11/76 (14%)

Query: 103 SNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGL----------VLRRNSDEVLVLDRVQ 152
              V V  G  + L C  S         W K G           V R  S   L +  V 
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVT-WYKQGGKLLAESGRFSVSRSGSTSTLTISNVT 59

Query: 153 REDAGMYQCHIEDGKY 168
            ED+G Y C   +   
Sbjct: 60  PEDSGTYTCAATNSSG 75

Length = 85

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 238 ESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI---GSSLSISHVEESDSGVWNCVAN 294
           E+  L C  +G P P I W    +P+E +D   R      +L ++ V+ SD+ V+ C A 
Sbjct: 2   ETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEAR 61

Query: 295 NSEG 298
           N  G
Sbjct: 62  NRHG 65

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5

 Score = 47.6 bits (113), Expect = 3e-07
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 3/65 (4%)

Query: 237 DESVILPCSAQGNPLPTIKWYKQDSPVE-ESD-RIQRIGSSLSISHVEES-DSGVWNCVA 293
           ++ VIL C A+GNP+PT +W +  + ++ ESD R   I  +L IS+  E  DSG + C+A
Sbjct: 19  EKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLA 78

Query: 294 NNSEG 298
            NS G
Sbjct: 79  TNSIG 83

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 47.5 bits (113), Expect = 3e-07
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI-----QRIGSSLSISHVEES 284
           ++  V    +V   C A GNP PT++W K     ++  RI     +    SL +  V  S
Sbjct: 2   KLHAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS 61

Query: 285 DSGVWNCVANNSEG 298
           D G + CV  N  G
Sbjct: 62  DKGNYTCVVENEYG 75

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 46.3 bits (110), Expect = 5e-07
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 238 ESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS----SLSISHVEESDSGVWNCVA 293
           E+V   C A G P P I W      V +S R+         +L+I  V+ESD G + C A
Sbjct: 2   ETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEA 61

Query: 294 NNSEG 298
            N+ G
Sbjct: 62  INTRG 66

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 46.4 bits (110), Expect = 7e-07
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 239 SVILPCSAQGNPLPTIKWYKQDSPV--EESDRIQRIGSSLSISHVEESDSGVWNCVANNS 296
           SV L C A GNP P I W K + P+   E    ++   +LS+ +++  DSG + C  +N 
Sbjct: 11  SVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNR 70

Query: 297 EGQ 299
            G+
Sbjct: 71  AGE 73

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 45.7 bits (108), Expect = 9e-07
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 242 LPCSAQGNPLPTIKWYKQ---DSPVEESDRIQRIGSS--LSISHVEESDSGVWNCVANNS 296
           L C+A G+P P I W K    D P     R+  +       I  V+  D+GV++C A N+
Sbjct: 3   LECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNT 62

Query: 297 EG 298
            G
Sbjct: 63  AG 64

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 239 SVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-GSSLSISHVEESDSGVWNCVANNSE 297
            VI+ C  +  P PTI W K    +  S RI      SL I +V +SD G + C A N  
Sbjct: 3   DVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFF 62

Query: 298 G 298
           G
Sbjct: 63  G 63

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 45.7 bits (108), Expect = 1e-06
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 242 LPCSAQGNPLPTIKWYKQDSPV--EESDRIQRI--GSSLSISHVEESDSGVWNCVANNSE 297
           L C A+G PLP + W K    +  + S ++  I  GS L IS+V   D+G + C+A N  
Sbjct: 3   LRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEA 62

Query: 298 G--QDKMQLFIQ 307
           G  +D   LF++
Sbjct: 63  GVDEDISSLFVE 74

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 9/77 (11%)

Query: 227 EKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI---GSSLSISHVEE 283
           E   I+ V+    V+L CSA+G P P I+W K    +      +R      SL I+ V  
Sbjct: 5   EPSDIVAVRGG-PVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVH 63

Query: 284 S-----DSGVWNCVANN 295
           S     D G + CVA N
Sbjct: 64  SKHNKPDEGFYQCVAQN 80

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 9/79 (11%)

Query: 238 ESVILPCSAQGNPLPTIKWYKQDSPVEESD---------RIQRIGSSLSISHVEESDSGV 288
           E + L C A+G+P+P I W +      E D         R     SSL++  V+ +D+G 
Sbjct: 17  EQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGR 76

Query: 289 WNCVANNSEGQDKMQLFIQ 307
           ++C A+N  G D+  ++++
Sbjct: 77  YDCEASNRIGGDQQSMYLE 95

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 231 ILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ---RIGS--SLSISHVEESD 285
           ++ + + +++ L C+  G+P P + W K D  +  SD        G   SL+I  V   D
Sbjct: 10  VVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSED 69

Query: 286 SGVWNCVANNSEGQDKMQLFI 306
           SG +  V  N  G + + + +
Sbjct: 70  SGKYGIVVKNKYGGETVDVTV 90

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 43.8 bits (103), Expect = 4e-06
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 240 VILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS-SLSISHVEESDSGVWNCVANNSEG 298
           ++  C   G P PT+KW K    V  SD  + +   +L +  + +SD G + C+A N  G
Sbjct: 2   IVFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVG 61

Query: 299 --QDKMQLFI 306
             Q   QL I
Sbjct: 62  NVQAGAQLII 71

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 44.4 bits (105), Expect = 4e-06
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS----SLSISHVEESDSGVW 289
           V +  +  + C+A+G+PLP ++W      V ++       +    +L +S++        
Sbjct: 12  VYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTV 71

Query: 290 NCVANNSEGQD 300
            C A N  GQ 
Sbjct: 72  TCTAENPVGQA 82

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 43.4 bits (102), Expect = 6e-06
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 238 ESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS-SLSISHVEESDSGVWNCVANNS 296
           ++V   C AQG P P I W K  S +    R   + S +L IS V   D G + C A N 
Sbjct: 3   QTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNI 62

Query: 297 EGQDK 301
            G  +
Sbjct: 63  VGSQR 67

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 42.4 bits (100), Expect = 9e-06
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 10/64 (15%)

Query: 111 GHRIELHCRVSPKRLSSAKA--WLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHI 163
           G  + L C              WLKDG  L  +     S   L +  V  ED+G+Y C  
Sbjct: 2   GQSVTLTCPAEGN---PVPNITWLKDGKPLPESNRFVASGSTLTIKSVSLEDSGLYTCVA 58

Query: 164 EDGK 167
           E+  
Sbjct: 59  ENSA 62

Length = 63

>gnl|CDD|143276 cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

 Score = 43.1 bits (101), Expect = 9e-06
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 238 ESVILPCSAQGNPLPTIKWYKQDSPVE--ESDRIQRI-GSSLSISHVEESDSGVWNCVAN 294
           E   L C A GNP P+I W     P+E   +D  +++ G ++  S V+E  S V+ C A+
Sbjct: 2   EDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNAS 61

Query: 295 NSEG 298
           N  G
Sbjct: 62  NEYG 65

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. Length = 76

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 10/61 (16%)

Query: 26 GHRIELHCRVSPKRLSSAKA--WLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHV 78
          G  + L C              WLKDG  L  +     S   L +  V  ED+G+Y C  
Sbjct: 2  GQSVTLTCPAEGN---PVPNITWLKDGKPLPESNRFVASGSTLTIKSVSLEDSGLYTCVA 58

Query: 79 S 79
           
Sbjct: 59 E 59

Length = 63

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 102 SSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 161
           + +  VV  G  + L C        +   W KDG+ L  + +       V  ED+G Y C
Sbjct: 5   TPSPTVVFEGEDVTLTCSAPGNPPPNYT-WYKDGVPLSSSQNGFFTP-NVSAEDSGTYTC 62

Query: 162 HIEDGKYHMLSS 173
              +G     S+
Sbjct: 63  VASNGGGGKTSN 74

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 43.0 bits (101), Expect = 1e-05
 Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 11/81 (13%)

Query: 237 DESVILPCSAQGNPLPTIKWYKQDSPVEESDRI----------QRIGSSLSISHVEESDS 286
           +E + L C A G+P+P+I W      +   ++            R+ SSL++ +++ +D+
Sbjct: 17  EEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARV-SSLTLKYIQYTDA 75

Query: 287 GVWNCVANNSEGQDKMQLFIQ 307
           G + C A+N+ GQD   ++++
Sbjct: 76  GEYLCTASNTIGQDSQSMYLE 96

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143272 cd05864, Ig2_VEGFR-2, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 240 VILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANN 295
           V +P    G P P +KWYK    +  +   +R G  L+I  V E D+G +  V  N
Sbjct: 1   VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFKR-GVHLTIYEVTEKDAGNYTVVLTN 55

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. Length = 70

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRED 70
            +  SP+   VV  G  + L C        +   W KDG+ L  + +       V  ED
Sbjct: 2  PVLTPSPT---VVFEGEDVTLTCSAPGNPPPNYT-WYKDGVPLSSSQNGFFTP-NVSAED 56

Query: 71 AGMYQC 76
          +G Y C
Sbjct: 57 SGTYTC 62

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143184 cd04983, IgV_TCR_alpha_like, Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 20/85 (23%)

Query: 238 ESVILPCSAQGNPLPTIKWYKQ--------------DSPVEESDRI------QRIGSSLS 277
           E+V L C+   +    + WY+Q              +   +E  R        R  SSL 
Sbjct: 14  ENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLH 73

Query: 278 ISHVEESDSGVWNCVANNSEGQDKM 302
           IS  + SDS V+ C  + S G  K+
Sbjct: 74  ISAAQLSDSAVYFCALSESGGTGKL 98

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. Length = 109

>gnl|CDD|143180 cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like domain of semaphorin

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEES----DRIQRIGSSLSISHVEE 283
           + +++ V +  SV L CS   + L ++ W  Q  P++      +R+      L I  V  
Sbjct: 2   EEKVVTVVEGNSVFLECS-PKSNLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSP 60

Query: 284 SDSGVWNCVANNSEGQDKMQLFIQYA 309
           +D+GV+ C    S      Q    Y+
Sbjct: 61  ADAGVYTCQ---SVEHGFKQTLATYS 83

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. Length = 89

>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

 Score = 41.0 bits (96), Expect = 6e-05
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 248 GNPLPTIKWYKQDSPVEESDRIQRIG-----SSLSISHVEESDSGVWNCVANNSEGQDKM 302
           G P PT+ W + D    E++   R+      SS  I   E  D GV+     N  G+D  
Sbjct: 21  GEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHA 80

Query: 303 QLFIQ 307
            LF++
Sbjct: 81  SLFVK 85

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86

>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

 Score = 40.1 bits (94), Expect = 9e-05
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 240 VILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNS 296
           V LP   +  P P I+WYK    + E +R ++ G SL+I  V E D+G +  V  N 
Sbjct: 1   VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNK 57

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 241 ILPCSAQG-NPLPTIKWYKQDSPVEESDRIQRIG-------SSLSISHVEESDSGVWNCV 292
           +L C A    P    KW+K    +   ++ + I        S L I+  + +DSG + CV
Sbjct: 2   VLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCV 61

Query: 293 ANNSEGQD 300
             N  G D
Sbjct: 62  VENILGND 69

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 237 DESVILPCSAQGNPLPTIKWYKQ--DSPVEESDRIQRIGSSLSISH-VEESDSGVWNCVA 293
           +E V L C A+ +P  T +W     +       R   +  +L I++  +  D+G + C+A
Sbjct: 19  EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLA 78

Query: 294 NNSEG 298
            N  G
Sbjct: 79  INRCG 83

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing chick retina, corresponding to the period of formation and maturation of AC processes. Length = 94

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 240 VILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS---SLSISHVEESDSGVWNCVANNS 296
           V L C   G+P PT +W++  +P+ +      + S   +L++      DSG++ C A+N+
Sbjct: 1   VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNA 60

Query: 297 EGQ 299
            G 
Sbjct: 61  FGS 63

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 231 ILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI-----QRIGSSLSISHVEESD 285
           ++ + + +++ L C+  GNP P + W+K D  +E S+       Q   +SL+I  V   D
Sbjct: 10  VVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSED 69

Query: 286 SGVWNCVANNSEGQDKMQLFI 306
           SG ++    N  G + + + +
Sbjct: 70  SGKYSINVKNKYGGETVDVTV 90

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 38.4 bits (89), Expect = 5e-04
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 9/69 (13%)

Query: 239 SVILPCSAQGNPLPTIKWYKQDS--------PVEESDRIQRIGS-SLSISHVEESDSGVW 289
           +V   C A GNP P I W K+ S        P + S R     +  L+I++V+ SD G +
Sbjct: 3   TVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYY 62

Query: 290 NCVANNSEG 298
            C   N  G
Sbjct: 63  ICQTLNVAG 71

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 37.9 bits (87), Expect = 6e-04
 Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 29 IELHCRVSPKRLSSAKAWLKDG-------LVLRRNSDE------VLVLDRVQREDAGMYQ 75
          + L C  S     +   WLK+G       L   R+S         L +  V  ED+G Y 
Sbjct: 1  VTLTCLASGPPPPTIT-WLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYT 59

Query: 76 CHVSADDDSAQMSAQ 90
          C  S    +   S  
Sbjct: 60 CVASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143263 cd05855, Ig_TrkB_d5, Fifth domain (immunoglobulin-like) of Trk receptor TrkB

 Score = 37.9 bits (88), Expect = 7e-04
 Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 9/72 (12%)

Query: 242 LPCSAQGNPLPTIKWYKQDSPVEESD----RIQRIGSS-----LSISHVEESDSGVWNCV 292
           +P + +GNP PT++W+ + + + ES+    +I  I ++     L + +    ++G++  V
Sbjct: 3   IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLV 62

Query: 293 ANNSEGQDKMQL 304
           A N  G+D+  +
Sbjct: 63  AKNEYGEDEKNV 74

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. Length = 79

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 18/69 (26%)

Query: 21 VVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEV----------LVLDRVQ 67
          V V  G      C V+      +S    W KDG  LR +SD            L +  VQ
Sbjct: 10 VEVQEGESARFTCTVTGDPDPTVS----WFKDGQPLR-SSDRFKVTYEGGTYTLTISNVQ 64

Query: 68 REDAGMYQC 76
           +D G Y C
Sbjct: 65 PDDEGKYTC 73

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 18/69 (26%)

Query: 106 VVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEV----------LVLDRVQ 152
           V V  G      C V+      +S    W KDG  LR +SD            L +  VQ
Sbjct: 10  VEVQEGESARFTCTVTGDPDPTVS----WFKDGQPLR-SSDRFKVTYEGGTYTLTISNVQ 64

Query: 153 REDAGMYQC 161
            +D G Y C
Sbjct: 65  PDDEGKYTC 73

Length = 90

>gnl|CDD|219514 pfam07686, V-set, Immunoglobulin V-set domain

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 26/94 (27%)

Query: 232 LNVKKDESVILPCSAQ-GNPLPTIKWYKQDS-------------------PVEESDRIQR 271
           + V +  SV LPCS    +   ++ WYKQ                           R+  
Sbjct: 11  VTVAEGGSVTLPCSFSSSSGSTSVYWYKQPLGKGPELIIHYVTSTPNGKVGPRFKGRVTL 70

Query: 272 IGS------SLSISHVEESDSGVWNCVANNSEGQ 299
            G+      SL+IS++  SDSG + C  +N    
Sbjct: 71  SGNGSKNDFSLTISNLRLSDSGTYTCAVSNPNEL 104

This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Length = 114

>gnl|CDD|143212 cd05735, Ig8_DSCAM, Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 11/77 (14%)

Query: 242 LPCSAQGNPLPTIKWYKQDSPVE-ESDR----IQRIG----SSLSISHVEESDSGVWNCV 292
           + C+A G     ++W K+D  +  E  R     + +G    S+L I      DSG ++C 
Sbjct: 6   MSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCH 65

Query: 293 ANNSEGQDK--MQLFIQ 307
           A NS G+D+  +QL +Q
Sbjct: 66  AINSYGEDRGIIQLTVQ 82

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 88

>gnl|CDD|143233 cd05756, Ig1_IL1R_like, First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 9/75 (12%)

Query: 237 DESVILPCSAQGNPLP-----TIKWYKQDS----PVEESDRIQRIGSSLSISHVEESDSG 287
            E V++ C    + +       + WYK D     P EE  R+ +    L        DSG
Sbjct: 14  GEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSG 73

Query: 288 VWNCVANNSEGQDKM 302
           ++ CV  NS    K+
Sbjct: 74  LYTCVVRNSTYCMKV 88

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. Length = 94

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 227 EKHRILNVKKDESVILPCSAQG-NPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESD 285
           E+ R   V+    V   C A+  +P  T+ W +    +    R       L+I +V+ SD
Sbjct: 6   EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGL--PSRAMDFNGILTIRNVQLSD 63

Query: 286 SGVWNCVANN 295
           +G + C  +N
Sbjct: 64  AGTYVCTGSN 73

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 99  EIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL-----RRNSDEVLVLDRVQR 153
            I  S    V  G  + L C           +W ++G +        +S   L L  V  
Sbjct: 3   VITVSPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGSTLTLSSVTS 62

Query: 154 EDAGMYQCHIE 164
           ED+G Y C   
Sbjct: 63  EDSGTYTCVAS 73

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 7/73 (9%)

Query: 12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL-----RRNSDEVLVLDRV 66
           I +SPS  V    G  + L C           +W ++G +        +S   L L  V
Sbjct: 3  VITVSPSPSVTS--GGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGSTLTLSSV 60

Query: 67 QREDAGMYQCHVS 79
            ED+G Y C  S
Sbjct: 61 TSEDSGTYTCVAS 73

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143176 cd04975, Ig4_SCFR_like, Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 14/62 (22%)

Query: 46 WLKDGLVLRRNSDEV--------------LVLDRVQREDAGMYQCHVSADDDSAQMSAQV 91
          W  D   L     E+              L L R++  +AG Y    S  D S  ++ ++
Sbjct: 38 WTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLTFEL 97

Query: 92 IL 93
           +
Sbjct: 98 YV 99

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta, binds only to PDGF-B. In mice, PDGFR alpha, and PDGFR beta, are essential for normal development. Length = 101

>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 11/79 (13%)

Query: 239 SVILPCSAQGNPLPTIKWYKQDSPVEESD-------RIQRIG----SSLSISHVEESDSG 287
           +  L C A+G P+P I W +       S+       RI+  G    SSL I  V+ SDSG
Sbjct: 18  AATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSG 77

Query: 288 VWNCVANNSEGQDKMQLFI 306
            ++C A +  G  +  +++
Sbjct: 78  RYDCEAASRIGGHQKSMYL 96

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 98

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 14/66 (21%)

Query: 114 IELHCRVSPKRLSSAKAWLKDG-------LVLRRNSDE------VLVLDRVQREDAGMYQ 160
           + L C  S     +   WLK+G       L   R+S         L +  V  ED+G Y 
Sbjct: 1   VTLTCLASGPPPPTIT-WLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYT 59

Query: 161 CHIEDG 166
           C   + 
Sbjct: 60  CVASNS 65

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 238 ESVILPCSAQGNPLPTIKW-YKQDSPVEESDR-IQRIGSSLSISHVEESDSGVWNCVANN 295
           +   L C A+G+P P I W       +  S R +     +L I      D+G + C+A+N
Sbjct: 2   QRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASN 61

Query: 296 SEGQ 299
           + G+
Sbjct: 62  AAGE 65

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	371
KOG3513|consensus	1051		100.0
KOG3513|consensus	1051		100.0
KOG4221|consensus	1381		100.0
KOG4194|consensus	873		100.0
KOG4222|consensus	1281		100.0
KOG4221|consensus	1381		99.98
PHA02785	326	IL-beta-binding protein; Provisional	99.97
KOG4222|consensus	1281		99.97
KOG4194|consensus	873		99.93
PHA02785	326	IL-beta-binding protein; Provisional	99.9
PHA02826	227	IL-1 receptor-like protein; Provisional	99.84
PHA02826	227	IL-1 receptor-like protein; Provisional	99.83
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.75
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.74
KOG3515|consensus	741		99.68
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.67
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.67
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.66
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.66
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.64
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.63
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.63
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.63
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.63
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.62
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.62
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.62
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.62
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.62
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.62
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.62
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.62
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.61
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.6
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.6
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.6
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.59
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.59
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.59
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.59
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.59
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.58
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.58
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.58
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.58
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.57
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.57
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.56
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.56
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.56
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.56
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.56
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.55
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.55
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.54
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.54
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.53
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.53
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.53
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.53
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.53
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.53
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.53
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.53
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.53
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.52
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.52
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.52
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.52
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.52
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.52
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.51
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.51
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.51
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.51
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.51
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.51
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.5
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.5
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.5
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.5
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.5
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.5
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.5
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.49
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.49
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.49
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.48
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.48
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.48
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.47
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.46
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.46
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.46
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.46
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.46
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.46
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.44
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.44
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.44
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.44
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.44
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.44
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.44
KOG3515|consensus	741		99.44
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.44
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.44
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.43
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.43
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.43
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.43
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.43
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.43
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.42
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.42
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.41
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.41
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.41
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.4
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.39
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.39
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.39
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.39
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.39
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.39
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.39
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.38
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.38
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.38
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.37
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.37
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.37
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.37
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.37
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.36
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.36
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.36
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.34
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.34
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.34
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.34
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.33
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.33
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.33
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.33
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.33
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.33
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.33
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.32
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.32
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.32
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.32
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.32
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.32
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.31
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.31
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.3
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.3
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.29
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.29
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.29
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.28
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.28
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.27
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.26
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.26
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.25
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.25
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.24
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.24
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.23
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.23
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.23
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.23
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.23
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.22
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.22
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.22
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.21
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.21
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.2
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.2
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.19
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.19
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.18
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.18
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.16
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.16
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.15
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.15
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.14
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.13
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	99.12
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.12
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.1
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.1
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.08
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.08
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.07
PHA03376	221	BARF1; Provisional	99.07
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.07
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.07
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.06
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.06
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.06
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	99.05
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	99.05
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.05
PHA03376	221	BARF1; Provisional	99.04
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.03
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.02
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.99
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.98
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.98
smart00409	86	IG Immunoglobulin.	98.98
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.97
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.97
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.97
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.96
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.95
smart00409	86	IG Immunoglobulin.	98.94
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.94
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.93
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.92
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.91
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.9
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.87
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.84
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.83
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.81
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.8
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.79
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.79
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.78
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.78
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.77
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.77
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.75
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.74
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.74
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.73
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.72
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.71
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.71
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.7
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.7
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.7
PHA03270	466	envelope glycoprotein C; Provisional	98.69
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.67
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.65
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.65
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.63
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.63
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.63
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.62
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.62
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.61
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.6
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.6
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.6
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.6
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.6
PHA03269	566	envelope glycoprotein C; Provisional	98.59
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.57
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.57
PHA03273	486	envelope glycoprotein C; Provisional	98.55
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.55
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.54
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.51
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.5
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.5
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.48
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.45
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.44
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.44
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.44
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.42
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.42
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.41
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.41
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.4
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.38
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.38
PHA03271	490	envelope glycoprotein C; Provisional	98.35
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.35
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.34
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.33
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.33
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.32
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.32
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.31
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.29
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.28
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.28
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.28
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.27
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.27
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.25
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.24
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.22
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.21
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.19
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.19
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.18
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.17
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.17
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.17
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.17
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.17
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.14
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.13
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.12
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.08
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	98.07
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.04
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.04
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.02
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.97
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.96
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.95
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.94
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.92
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.91
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.9
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.89
smart00407	75	IGc1 Immunoglobulin C-Type.	97.87
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.86
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.86
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.85
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.84
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.83
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.82
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	97.81
smart00407	75	IGc1 Immunoglobulin C-Type.	97.79
PHA03270	466	envelope glycoprotein C; Provisional	97.79
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.78
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.78
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	97.77
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.77
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.77
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.76
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.76
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.75
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.73
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.73
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.73
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.72
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.71
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.7
PHA03273	486	envelope glycoprotein C; Provisional	97.68
PHA03269	566	envelope glycoprotein C; Provisional	97.68
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.65
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.64
PHA02633	63	hypothetical protein; Provisional	97.64
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.61
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.61
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.59
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.58
smart00406	81	IGv Immunoglobulin V-Type.	97.58
PHA03271	490	envelope glycoprotein C; Provisional	97.56
smart00406	81	IGv Immunoglobulin V-Type.	97.52
PHA02982	251	hypothetical protein; Provisional	97.51
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.47
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.45
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.45
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.45
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.44
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.44
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.43
PHA02914	500	Immunoglobulin-like domain protein; Provisional	97.42
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.42
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.39
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.33
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.33
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	97.32
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.3
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.25
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	97.19
PHA02633	63	hypothetical protein; Provisional	97.15
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.1
KOG1480|consensus	909		97.1
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	97.05
KOG1480|consensus	909		96.95
KOG0613|consensus	1205		96.87
KOG0613|consensus	1205		96.68
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.55
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	96.47
PHA02914	500	Immunoglobulin-like domain protein; Provisional	96.43
PHA03042	286	CD47-like protein; Provisional	96.36
PF03921	91	ICAM_N: Intercellular adhesion molecule (ICAM), N-	96.22
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	96.09
PHA02982	251	hypothetical protein; Provisional	96.07
PHA03042	286	CD47-like protein; Provisional	95.99
KOG4597|consensus	560		95.98
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	95.79
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	94.94
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	94.52
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	93.63
KOG4597|consensus	560		93.45
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	93.35
PHA02865	338	MHC-like TNF binding protein; Provisional	92.91
PRK14081	667	triple tyrosine motif-containing protein; Provisio	92.32
PHA02865	338	MHC-like TNF binding protein; Provisional	92.08
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	92.03
PRK14081	667	triple tyrosine motif-containing protein; Provisio	88.2
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	86.97
PHA03052	69	Hypothetical protein; Provisional	86.61
PHA03240	258	envelope glycoprotein M; Provisional	86.56
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	86.14
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	86.14
PHA03052	69	Hypothetical protein; Provisional	86.12
PHA03189	348	UL14 tegument protein; Provisional	84.55
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	82.39
PHA03189	348	UL14 tegument protein; Provisional	80.92

>KOG3513|consensus

Probab=100.00  E-value=2.4e-41  Score=306.01  Aligned_cols=303  Identities=27%  Similarity=0.388  Sum_probs=256.1

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCE-EEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCCC
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGL-VLRRN-----SDEVLVLDRVQREDAGMYQCHVSADDD   83 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~-~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~   83 (371)
                      +|.+.+.+........|+.+.|.| .+.++|.+++.|.|.+. .+...     ....|.|.+++.+|+|.|+|.+.|..|
T Consensus       240 ~P~i~~~~p~~~~a~~G~~v~LEC-fA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G  318 (1051)
T KOG3513|consen  240 APKILVPFPETETALKGQSVKLEC-FALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRG  318 (1051)
T ss_pred             CCccccCCCCcccccCCCeEEEEE-EecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccc
Confidence            455666555457899999999999 88999999999999766 33322     677999999999999999999999999


Q ss_pred             CeEEEEEEEEecceeeEecCCceee-ecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEE
Q psy14542         84 SAQMSAQVILGGELVEIASSNQVVV-DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH  162 (371)
Q Consensus        84 ~~~~~~~l~v~~~~~~~~~~~~~~~-~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~  162 (371)
                      .......|.|. .+|.+...+.+.. ..|+++.|.|.+.|.|. +.|+|++||.++....+                   
T Consensus       319 ~~~~~~~v~v~-a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~-p~v~WlkNg~pl~~~~r-------------------  377 (1051)
T KOG3513|consen  319 SATHSGHVTVY-APPYWLQKPQDTEADTGSNVTLECKASGKPN-PTVKWLKNGEPLEPAER-------------------  377 (1051)
T ss_pred             cceeeEEEEEe-cCchhhcccceeEecCCCCeEEEEEecCCCC-CceEEeeCCeecCccCC-------------------
Confidence            88999999999 8888888887776 89999999999999888 99999999999885532                   


Q ss_pred             EeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeee-eeeecCCeEE
Q psy14542        163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRI-LNVKKDESVI  241 (371)
Q Consensus       163 ~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~-~~~~~g~~~~  241 (371)
                        +.++. ..++.|+|+++...| +|.|.|.|.|. .|....++   .|.|..    .+|.+...+... ..+..|..+.
T Consensus       378 --~~~~~-i~~g~L~is~v~~~d-sg~YQC~A~Nk-~G~i~anA---~L~V~a----~~P~f~~~p~~~~~~a~~g~~v~  445 (1051)
T KOG3513|consen  378 --DPRYK-IDDGTLIISNVQESD-SGVYQCIAENK-YGTIYANA---ELKVLA----SAPVFPLNPVERKVMAVVGGTVT  445 (1051)
T ss_pred             --CcceE-EeCCEEEEEeccccc-CeEEEeeeecc-cceEeeee---EEEEEc----cCCCCCCCccceEEEEEeCCeEE
Confidence              01122 223789999999999 99999999999 99988888   999985    346665554433 2388899999


Q ss_pred             EEEEeecCCCCceEEEeCCcccccCCceEE-ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcccccccce
Q psy14542        242 LPCSAQGNPLPTIKWYKQDSPVEESDRIQR-IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGE  320 (371)
Q Consensus       242 l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~  320 (371)
                      |.|...+.|.|.++|.++++.+..++|+.. .+++|.|.+++.+|+|.|+|.|+|..|+...+..|.|.++++       
T Consensus       446 i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tr-------  518 (1051)
T KOG3513|consen  446 IDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATR-------  518 (1051)
T ss_pred             EeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCce-------
Confidence            999999999999999999997788888885 789999999999999999999999999999999999999999       


Q ss_pred             EEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCC--ccccC
Q psy14542        321 LIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP--TIKYR  371 (371)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p--~i~W~  371 (371)
                        |.  ..|...              .+..|+.++|.|.+..++..  .|.|.
T Consensus       519 --i~--~~P~~~--------------~v~~g~~v~l~Ce~shD~~ld~~f~W~  553 (1051)
T KOG3513|consen  519 --IT--LAPSNT--------------DVKVGESVTLTCEASHDPSLDITFTWK  553 (1051)
T ss_pred             --EE--eccchh--------------hhccCceEEEEeecccCCCcceEEEEE
Confidence              76  244432              68899999999999977664  67774

>KOG3513|consensus

Probab=100.00  E-value=2.3e-37  Score=280.32  Aligned_cols=325  Identities=23%  Similarity=0.364  Sum_probs=259.9

Q ss_pred             ceEEEeCCCcEEEeccCc--EEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCC-cCCCeEEEEEEEc
Q psy14542         11 LSIEMSPSGQVVVDVGHR--IELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQ-REDAGMYQCHVSA   80 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~--v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~-~~d~G~Y~C~~~~   80 (371)
                      |.+...|...+....-+.  +.|.| .+.++|.+++.|+|||......       ..++|.|.+.. ..|.|.|+|.|.|
T Consensus        40 P~f~~q~~~~~~~~~~~~~~v~l~C-~A~G~P~Psy~W~kng~~~d~~~~~~~~~~~G~lvI~~p~~~~d~G~YqC~AsN  118 (1051)
T KOG3513|consen   40 PVFVEQPNDVIVPFPSDDSSVTLNC-EANGNPEPSYRWTKNGTEFDPTEYPRVSVLGGTLVITNPDAALDQGIYQCFASN  118 (1051)
T ss_pred             ceeeecCCceEEecccCCccEEEEE-EecCCCCceeEEEECCeecccccccceeeecCceEecCCcchhhcceeEEEeec
Confidence            566666665344444444  99999 6788999999999999877655       56788888888 8899999999999


Q ss_pred             CCCCe-EEEEEEEEecceeeEecC--CceeeecCCcEEEEEEecCCCCCceEEEeeCCEE---------eeeCCeeEEEE
Q psy14542         81 DDDSA-QMSAQVILGGELVEIASS--NQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLV---------LRRNSDEVLVL  148 (371)
Q Consensus        81 ~~~~~-~~~~~l~v~~~~~~~~~~--~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~---------~~~~~~~~~~~  148 (371)
                      ..|.. +..+.|... ..+.+...  ....+.+|+.+.|.|......+.+.+.|..+..+         ...+....|.+
T Consensus       119 ~~Gta~S~~~~l~~~-~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~G~Lyf  197 (1051)
T KOG3513|consen  119 KLGTAVSREARLQFG-FIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRVFSQENGNLYF  197 (1051)
T ss_pred             ccceeeccceeeccc-ccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcceeEecccceEEE
Confidence            98876 345666555 33334322  3344589999999999865544499999875432         22233458899


Q ss_pred             cccCcCCCeeEEEEEe----------------------------------------------------------------
Q psy14542        149 DRVQREDAGMYQCHIE----------------------------------------------------------------  164 (371)
Q Consensus       149 ~~~~~~~~g~y~~~~~----------------------------------------------------------------  164 (371)
                      .++..+|.+.|.|.+.                                                                
T Consensus       198 s~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k  277 (1051)
T KOG3513|consen  198 SNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRK  277 (1051)
T ss_pred             eecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEe
Confidence            9999999999996655                                                                


Q ss_pred             -CC------ceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecC
Q psy14542        165 -DG------KYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKD  237 (371)
Q Consensus       165 -~~------~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g  237 (371)
                       ++      .........|.|.+++.+| .|.|.|.+.|. .|......   .+.|.     .+|.+...+.+.. +..|
T Consensus       278 ~~g~~~~~r~~~~~~~~vL~I~nv~~~D-~G~Y~C~AeN~-~G~~~~~~---~v~v~-----a~P~w~~~~~d~~-~~~g  346 (1051)
T KOG3513|consen  278 VDGKPPPRRATYSNYGKVLKIPNVQYED-AGEYECIAENS-RGSATHSG---HVTVY-----APPYWLQKPQDTE-ADTG  346 (1051)
T ss_pred             CCCCCCCcceeeeccccEEEecccCcCC-CeEEEEEEecc-cccceeeE---EEEEe-----cCchhhcccceeE-ecCC
Confidence             11      1111123579999999999 99999999999 88777777   88888     8899998888888 9999


Q ss_pred             CeEEEEEEeecCCCCceEEEeCCcccccCCc---eEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecC-cc
Q psy14542        238 ESVILPCSAQGNPLPTIKWYKQDSPVEESDR---IQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHG-KY  313 (371)
Q Consensus       238 ~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~-p~  313 (371)
                      +.+.|.|.+.|.|.|+|+|++||.++....+   +....+.|.|.++...|+|.|.|.|+|.+|.....+.|.|... |.
T Consensus       347 s~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~  426 (1051)
T KOG3513|consen  347 SNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPV  426 (1051)
T ss_pred             CCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCC
Confidence            9999999999999999999999999987777   7889999999999999999999999999999999999999876 44


Q ss_pred             cccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        314 HMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                               +.  ..|.....            .+..|..+.|.|...+.|.|.++|.
T Consensus       427 ---------f~--~~p~~~~~------------~a~~g~~v~i~C~~~asP~p~~~W~  461 (1051)
T KOG3513|consen  427 ---------FP--LNPVERKV------------MAVVGGTVTIDCKPFASPKPKVSWL  461 (1051)
T ss_pred             ---------CC--CCccceEE------------EEEeCCeEEEeeccCCCCcceEEEE
Confidence                     33  44444333            6889999999999999999999995

>KOG4221|consensus

Probab=100.00  E-value=3.5e-33  Score=252.57  Aligned_cols=304  Identities=25%  Similarity=0.410  Sum_probs=236.6

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeCCEEEeeC--------CeeEEEEccCCc-----CCCeEE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRN--------SDEVLVLDRVQR-----EDAGMY   74 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~-----~d~G~Y   74 (371)
                      .++.+.++|++   ..+|.++.|.|...... +...+.|.+||..+...        .+++|.|.++..     -|+|.|
T Consensus        40 ~~~~f~~ep~d---~~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~~LsNgSl~i~~v~~~kh~~~~eg~Y  116 (1381)
T KOG4221|consen   40 TPLQFLLEPSD---AMEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQLLSNGSLYISSVLASKHNKVDEGVY  116 (1381)
T ss_pred             CcceEEecccc---cccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHhhccCCceeEeeecccccccccCceE
Confidence            46778899987   38999999999654433 36789999999877665        788999999988     789999


Q ss_pred             EEEEEcC-CCCe-EEEEEEEEecceeeEecC-CceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEccc
Q psy14542         75 QCHVSAD-DDSA-QMSAQVILGGELVEIASS-NQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRV  151 (371)
Q Consensus        75 ~C~~~~~-~~~~-~~~~~l~v~~~~~~~~~~-~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~  151 (371)
                      +|.++.. .|.. +.++.|.+. ..+.+... ....+..|+++.|.|.+.+.+. +.+.|.++..++....         
T Consensus       117 qc~atv~~~gsi~Sr~a~v~~a-~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~-p~i~w~kn~~pl~~~~---------  185 (1381)
T KOG4221|consen  117 QCLATVEDVGSILSRTAKVALA-GLADFALQPESTTLLYGQTALFSCEVNAEPV-PTIMWLKNDQPLPLDS---------  185 (1381)
T ss_pred             EEEEEccccceeecceEEEEec-ccCccccCccceeEecCCcEEEEEEEcCccC-ceeEEecccccccCCC---------
Confidence            9999965 3332 556777776 44444444 4445589999999999998776 7899999999776642         


Q ss_pred             CcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchh-ccccceeeeeee
Q psy14542        152 QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKR-LLSAAKMFEKHR  230 (371)
Q Consensus       152 ~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~-~~~p~~~~~~~~  230 (371)
                                     ++....++.|.|.++...| .|.|+|.+.+..........   .|+|.-... ...-.|...+..
T Consensus       186 ---------------r~i~lpsG~L~I~~~qp~d-~g~yrc~vt~g~~~r~S~~a---~ltv~s~~~~~~~~~fl~~p~~  246 (1381)
T KOG4221|consen  186 ---------------RVIVLPSGALEISGLQPSD-TGEYRCVVTGGASQRTSNEA---ELTVLSDPGALNKLVFLDEPSN  246 (1381)
T ss_pred             ---------------cEEEcCCCcEEecccccCC-CceEEEEEecCCcCCcccee---EEEecCCcccccceeeecCCCc
Confidence                           5556667899999999999 99999999987332333333   677662211 122234455555


Q ss_pred             eeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCC-ceE-EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        231 ILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD-RIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       231 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      .. +..|+++.|.|.+.+.|.|.|.|.+|+..+...+ ++. ...+.|.|.+++..|+|.|+|+|+|..-...+.+.|.|
T Consensus       247 ~~-v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V  325 (1381)
T KOG4221|consen  247 AV-VVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTV  325 (1381)
T ss_pred             cc-cccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEE
Confidence            55 9999999999999999999999999999887664 333 34678999999999999999999997777888888999


Q ss_pred             ecCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        309 AHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       309 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                      ..+|.         +.                ..|..+.+.++.++.|.|.+.|.|.|.+.|+
T Consensus       326 ~a~P~---------~~----------------~~p~~l~A~e~~die~ec~~~g~p~p~v~w~  363 (1381)
T KOG4221|consen  326 LAPPG---------FT----------------KAPTTLVAHESMDIEFECPVSGKPIPTVRWY  363 (1381)
T ss_pred             EcCCC---------CC----------------CCCcceeeeeccceeEeCCCCCCCcceEEEE
Confidence            98888         44                2233347888999999999999999999996

>KOG4194|consensus

Probab=100.00  E-value=1.4e-31  Score=226.60  Aligned_cols=271  Identities=23%  Similarity=0.387  Sum_probs=220.4

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCC-CCCCeeEEEeCCEEEeeC----------------------CeeEEEEc
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRN----------------------SDEVLVLD   64 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~~~~~~~~----------------------~~~~l~i~   64 (371)
                      .++|++...|.. +....|++++|+|.+.+. ..+.++.|.++++.....                      ...-|.+.
T Consensus       501 spkpqI~~qPe~-~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~  579 (873)
T KOG4194|consen  501 SPKPQIVTQPET-VSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLD  579 (873)
T ss_pred             CCCcceecCchH-hhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeee
Confidence            457888888888 888999999999976553 334579999987744333                      34568999


Q ss_pred             cCCcCCCeEEEEEEEcCCCCe-EEEEEEEEecceeeEecCCceee-ecCCcEEEEEEecCCCCCceEEEeeCCEE-eeeC
Q psy14542         65 RVQREDAGMYQCHVSADDDSA-QMSAQVILGGELVEIASSNQVVV-DVGHRIELHCRVSPKRLSSAKAWLKDGLV-LRRN  141 (371)
Q Consensus        65 ~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~-~~g~~v~l~C~~~~~~~~~~v~W~~~~~~-~~~~  141 (371)
                      +++..|+|.|+|+++|..|+. +..+.|+|. ..|.+...|.+.. ..|+...|.|.+.|.|. +.+.|.|+|.. .+..
T Consensus       580 nVt~td~grYQCVvtN~FGStysqk~KltV~-~~PsFtktP~dltl~tg~mArl~CaAtG~P~-PeIawqkdggtdFPAA  657 (873)
T KOG4194|consen  580 NVTFTDEGRYQCVVTNHFGSTYSQKAKLTVN-QAPSFTKTPEDLTLRTGQMARLECAATGHPR-PEIAWQKDGGTDFPAA  657 (873)
T ss_pred             eeecccCceEEEEEecccCcchhheeEEEee-ccCccccCcccceeecccceeeeeeccCCCC-cceeehhcCCCCCchh
Confidence            999999999999999999986 577899998 6777777776655 89999999999999998 99999998765 3332


Q ss_pred             CeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccc
Q psy14542        142 SDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLS  221 (371)
Q Consensus       142 ~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~  221 (371)
                      ....++                     .+..+-.+.|.++..+| .|.|+|.|.|. .|..+.+.   .+.|.     ..
T Consensus       658 ~eRRl~---------------------Vmpedd~f~Itnvk~eD-~GiYtC~A~n~-AG~isanA---tL~V~-----e~  706 (873)
T KOG4194|consen  658 RERRLH---------------------VMPEDDVFFITNVKIED-QGIYTCTAQNV-AGQISANA---TLTVL-----ET  706 (873)
T ss_pred             hhheee---------------------ecCCCCEEEEecccccc-cceeEEeeecc-ccceeece---EEEEe-----cC
Confidence            221111                     12223568899999999 99999999999 89888888   99999     66


Q ss_pred             cceeeeeeeeeeeecCCeEEEEEEeecCCC-CceEEEeCCcccccCCceE--EecceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542        222 AAKMFEKHRILNVKKDESVILPCSAQGNPL-PTIKWYKQDSPVEESDRIQ--RIGSSLSISHVEESDSGVWNCVANNSEG  298 (371)
Q Consensus       222 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  298 (371)
                      |.+........ +..|+++.|.|.+.+.|. |.+.|+|+++++....+..  ..+.-|.+.....+|+|.|+|...|..|
T Consensus       707 p~f~~PL~~~~-V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~  785 (873)
T KOG4194|consen  707 PSFSIPLEDQL-VVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLG  785 (873)
T ss_pred             CcccccccceE-EEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeecc
Confidence            67766677777 999999999999999887 9999999999887776554  3345688899999999999999999999


Q ss_pred             CceeEEEEEEecCcc
Q psy14542        299 QDKMQLFIQYAHGKY  313 (371)
Q Consensus       299 ~~~~~~~l~v~~~p~  313 (371)
                      .....+.+.+...+.
T Consensus       786 ~~~~~i~l~~~~~~~  800 (873)
T KOG4194|consen  786 TERIHICLLVYQKKK  800 (873)
T ss_pred             ceeeEEEEEEeecCC
Confidence            998888887776665

>KOG4222|consensus

Probab=100.00  E-value=9.3e-32  Score=242.09  Aligned_cols=304  Identities=24%  Similarity=0.375  Sum_probs=238.6

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccC-----CcCCCeEE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRV-----QREDAGMY   74 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~-----~~~d~G~Y   74 (371)
                      .+|.+...|.. ..+..|++++|.| -..+.|.++|+|||+|......         ..++|.+..+     ...|.|.|
T Consensus        30 ~~p~iiehp~d-~vvs~~~patlnc-~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y  107 (1281)
T KOG4222|consen   30 QPPRIIEHPHD-LVVSKGEPATLNC-KASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVY  107 (1281)
T ss_pred             CCCceEecchh-hhccCCCCceeec-CCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCcee
Confidence            46888889988 8899999999999 5678889999999999644433         4445554432     12389999


Q ss_pred             EEEEEcCCCCe-EEEEEEEEecceeeEecCCceee-ecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccC
Q psy14542         75 QCHVSADDDSA-QMSAQVILGGELVEIASSNQVVV-DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQ  152 (371)
Q Consensus        75 ~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~-~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~  152 (371)
                      .|++.|..+.. +....|.+...+..+...+.... ..|+.+.|.|.-....+.+.+.|.|+|+++....          
T Consensus       108 ~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~----------  177 (1281)
T KOG4222|consen  108 SCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYD----------  177 (1281)
T ss_pred             EeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCcccccc----------
Confidence            99999988875 33455555534555555555544 7899999999985444448999999999887322          


Q ss_pred             cCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeee
Q psy14542        153 REDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRIL  232 (371)
Q Consensus       153 ~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~  232 (371)
                                  ...+.+...+.|.|.+++..| .|.|.|++.|-.........   .+.|.     .+|.+...+....
T Consensus       178 ------------~~~~~lisgG~LlIsnvrksD-~GtY~CVatNmvG~ReS~~A---~lsv~-----e~P~f~~rp~~~~  236 (1281)
T KOG4222|consen  178 ------------VPIIALISGGNLLISNVRKSD-EGTYACVATNMVGERESIPA---RLSVQ-----EKPWFWKRPKDLA  236 (1281)
T ss_pred             ------------ceeEEEecCCcEEEeccccCC-Cceeeeeecccccccccccc---eeeec-----cCCccccccccce
Confidence                        113344455889999999999 99999999998333444344   88888     7889988888888


Q ss_pred             eeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecC
Q psy14542        233 NVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHG  311 (371)
Q Consensus       233 ~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  311 (371)
                       +..|..+.+.|.+.|+|.|.+.|.+++..+....... ..+.+|.|.++...|.|.|.|.+.|..|.......+.|+.+
T Consensus       237 -v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~ap  315 (1281)
T KOG4222|consen  237 -VLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAP  315 (1281)
T ss_pred             -eecccccccccccCCCCCCceeeeccCCCCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEecC
Confidence             9999999999999999999999999887776554333 34478999999999999999999999999999999999999


Q ss_pred             cccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        312 KYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       312 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                      |.         +.  .-|..              ..+..|..++|.|.+.|+|+|.+.|.
T Consensus       316 P~---------f~--kkp~d--------------q~v~lg~~vt~pc~~~gnP~PavfW~  350 (1281)
T KOG4222|consen  316 PS---------FG--KKPRD--------------QKVALGGTVTFPCETLGNPPPAVFWL  350 (1281)
T ss_pred             cc---------cc--cccCc--------------cccccCceEEeeeecCCCCCcceEEe
Confidence            98         54  22222              26778999999999999999999994

>KOG4221|consensus

Probab=99.98  E-value=1.5e-30  Score=235.66  Aligned_cols=274  Identities=20%  Similarity=0.391  Sum_probs=221.6

Q ss_pred             eeEEecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCCcCCCeEEEE
Q psy14542          3 LFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQC   76 (371)
Q Consensus         3 ~~~~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C   76 (371)
                      ..|.++..+.+...+.+ ..+..|+++.|.|.+ ++.+.+.+.|.+|+..+...      .++.|.|.+++..|.|.|+|
T Consensus       133 a~v~~a~~~~f~~~~~~-~t~~~g~ta~f~c~v-n~e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc  210 (1381)
T KOG4221|consen  133 AKVALAGLADFALQPES-TTLLYGQTALFSCEV-NAEPVPTIMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRC  210 (1381)
T ss_pred             EEEEecccCccccCccc-eeEecCCcEEEEEEE-cCccCceeEEecccccccCCCcEEEcCCCcEEecccccCCCceEEE
Confidence            34556777888888888 899999999999965 45778899999998866544      67889999999999999999


Q ss_pred             EEEcCCCCe-EEEEEEEEecce-----eeEecCCceee-ecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEc
Q psy14542         77 HVSADDDSA-QMSAQVILGGEL-----VEIASSNQVVV-DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLD  149 (371)
Q Consensus        77 ~~~~~~~~~-~~~~~l~v~~~~-----~~~~~~~~~~~-~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~  149 (371)
                      .+.+...+. +....|+|...+     ..|...+...+ .+|+++.|.|.+.+.+. +.|.|.+++..+....       
T Consensus       211 ~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~-p~v~Wlrng~~i~~ds-------  282 (1381)
T KOG4221|consen  211 VVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPK-PSVKWLRNGEKISVDS-------  282 (1381)
T ss_pred             EEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCC-CceEEeeCCeeeeecc-------
Confidence            999876543 556677776211     12344444444 89999999999999998 9999999999887753       


Q ss_pred             ccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeee
Q psy14542        150 RVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKH  229 (371)
Q Consensus       150 ~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~  229 (371)
                                      .++.+...+.|.|++++..| +|.|+|.|.|. ......+.   +++|.     .+|.+...+.
T Consensus       283 ----------------~rivl~g~~slliS~a~~~d-Sg~YtC~Atn~-~D~idasa---ev~V~-----a~P~~~~~p~  336 (1381)
T KOG4221|consen  283 ----------------YRIVLVGGSSLLISNATDDD-SGKYTCRATNT-NDSIDASA---EVTVL-----APPGFTKAPT  336 (1381)
T ss_pred             ----------------eEEEEecccceEEecccccc-CceEEEEecCC-Ccccccce---EEEEE-----cCCCCCCCCc
Confidence                            13344444789999999999 99999999996 55555566   88998     7888888888


Q ss_pred             eeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecc-eEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS-SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       230 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      ... ..++.++.|.|.+.|.|.+.+.|++||..+..++.++...+ .|.|..+-..|.|-|.|.++|..|.....+.+.+
T Consensus       337 ~l~-A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~v  415 (1381)
T KOG4221|consen  337 TLV-AHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEV  415 (1381)
T ss_pred             cee-eeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCcccccchhhhee
Confidence            887 77899999999999999999999999998887877775443 3888889999999999999999999988888866


Q ss_pred             ecCcc
Q psy14542        309 AHGKY  313 (371)
Q Consensus       309 ~~~p~  313 (371)
                      ...|.
T Consensus       416 v~~p~  420 (1381)
T KOG4221|consen  416 VPQPA  420 (1381)
T ss_pred             ccCCc
Confidence            54433

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.97  E-value=2.2e-29  Score=212.25  Aligned_cols=247  Identities=18%  Similarity=0.271  Sum_probs=171.2

Q ss_pred             EEEeccCcEEEEEEec----CCCCCCeeEEEeCCEE----EeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEE
Q psy14542         21 VVVDVGHRIELHCRVS----PKRLSSAKAWLKDGLV----LRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI   92 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~----~~~~~~~~~W~~~~~~----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~   92 (371)
                      ..+.+|+++.|.|...    .+.|.+++.|+|+|..    ........|.|.++..+|+|.|+|.+.|..+.....+.|.
T Consensus        36 ~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~  115 (326)
T PHA02785         36 FMELENEPVILPCPQINTLSSGYNILDILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLNLT  115 (326)
T ss_pred             hhhhcCCCEEEECCCccccccCCCCceEEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEEEE
Confidence            4577899999999642    5778889999998743    1111344688999999999999999999988888888888


Q ss_pred             Eecce-eeEec-CCceeeecCCcEEEEEEe-----cCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeC
Q psy14542         93 LGGEL-VEIAS-SNQVVVDVGHRIELHCRV-----SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED  165 (371)
Q Consensus        93 v~~~~-~~~~~-~~~~~~~~g~~v~l~C~~-----~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~  165 (371)
                      |.... +.+.. .....+.+|..+.|.|..     .+.+. +.++|++++. +.                         +
T Consensus       116 V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~-~~i~W~k~~~-~~-------------------------~  168 (326)
T PHA02785        116 IVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVN-ADIIWSGHRR-LR-------------------------N  168 (326)
T ss_pred             EEecCCCccceeeccceecccCcEEEECCChhhcccCCCC-ceEEEccCCc-cC-------------------------C
Confidence            86322 11211 112234689999999972     34444 8999987542 21                         1


Q ss_pred             CceeEeccceEEEEEeecCCccceeEEEeeccccceeeeee-ccceeeeecchhccccceeeeeeeeeeeecCCeEEEEE
Q psy14542        166 GKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSV-NRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPC  244 (371)
Q Consensus       166 ~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~-~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C  244 (371)
                      .++....++.|.|.+++.+| .|.|+|.+.+. .+...... ..+.+.|..  ...+|.+ ..+.... +..|+.+.|.|
T Consensus       169 ~r~~~~~~~~L~i~~v~~~d-~G~Y~C~~~n~-~g~~~~~~t~~v~l~V~~--~~~pp~~-~~p~~~~-~~~G~~v~L~C  242 (326)
T PHA02785        169 KRLKQRTPGIITIEDVRKND-AGYYTCVLKYI-YGDKTYNVTRIVKLEVRD--RIIPPTM-QLPEGVV-TSIGSNLTIAC  242 (326)
T ss_pred             cceEecCCCeEEEeecChhh-CeEEEEEEEec-cCCEEEeEEEEEEEEEec--cCCCcee-cCCCcEE-ecCCCcEEEEE
Confidence            13333334689999999999 99999999997 44332211 111344432  2234433 2334444 77899999999


Q ss_pred             EeecCCCC---ceEEEeCCcccccC-----CceEE------------ecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        245 SAQGNPLP---TIKWYKQDSPVEES-----DRIQR------------IGSSLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       245 ~~~~~p~~---~v~W~~~~~~~~~~-----~~~~~------------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      .+.|.|.+   .+.|++||..+...     .++..            ..+.|.|.++..+|+|.|+|.|.|..|..
T Consensus       243 ~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~  318 (326)
T PHA02785        243 RVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS  318 (326)
T ss_pred             EEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence            99988864   79999999877432     12211            13579999999999999999999988544

>KOG4222|consensus

Probab=99.97  E-value=1e-30  Score=235.52  Aligned_cols=303  Identities=25%  Similarity=0.406  Sum_probs=239.4

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEEEcCCC
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHVSADDD   83 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~~   83 (371)
                      .+.+.|.. ..+..|+.+.|.|....++|.+.+.|.|+|+.+...        ..+.|.|.+++.+|+|.|.|+++|..|
T Consensus       133 dfrv~prd-~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG  211 (1281)
T KOG4222|consen  133 DFRVSPRD-VQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVG  211 (1281)
T ss_pred             hcccCccc-ccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeeccccc
Confidence            46677777 889999999999977789999999999999887732        778899999999999999999999998


Q ss_pred             Ce-EEEEEEEEecceeeEecCCceee-ecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEE
Q psy14542         84 SA-QMSAQVILGGELVEIASSNQVVV-DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC  161 (371)
Q Consensus        84 ~~-~~~~~l~v~~~~~~~~~~~~~~~-~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~  161 (371)
                      .. +....|.|. ++|.+...+.+.+ ..|..+.++|.+.+.|. +.+.|.+++..+...                    
T Consensus       212 ~ReS~~A~lsv~-e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~-P~Vrwkk~~~~~P~~--------------------  269 (1281)
T KOG4222|consen  212 ERESIPARLSVQ-EKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQ-PTVRWKKDDPSLPRS--------------------  269 (1281)
T ss_pred             ccccccceeeec-cCCccccccccceeecccccccccccCCCCC-CceeeeccCCCCCcc--------------------
Confidence            76 456888888 6777777776665 88999999999999988 999999977666554                    


Q ss_pred             EEeCCceeEecc-ceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeE
Q psy14542        162 HIEDGKYHMLSS-GELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESV  240 (371)
Q Consensus       162 ~~~~~~~~~~~~-~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~  240 (371)
                           ++.+..+ .+|.|.+++..| .|.|.|.+.|. .|....+.   .++|+     .+|.+...+.... +..|..+
T Consensus       270 -----ry~i~~d~qtl~i~r~tp~d-eg~y~C~a~n~-vG~l~asa---~ltV~-----apP~f~kkp~dq~-v~lg~~v  333 (1281)
T KOG4222|consen  270 -----RYSILDDTQTLRIDRVTPTD-EGTYVCPAENL-VGGLEASA---TLTVQ-----APPSFGKKPRDQK-VALGGTV  333 (1281)
T ss_pred             -----ceeeeeccccccccccCCCc-ccceeeecccc-cccccccc---ceEEe-----cCcccccccCccc-cccCceE
Confidence                 3333333 689999999999 99999999999 77777777   99999     7888888887777 8999999


Q ss_pred             EEEEEeecCCCCceEEEeCCccc--------ccCCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecC
Q psy14542        241 ILPCSAQGNPLPTIKWYKQDSPV--------EESDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHG  311 (371)
Q Consensus       241 ~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  311 (371)
                      +|.|.+.|+|.|.+.|.+.|...        ....+.. ...++|.|.+++..|.|.|.|...+..|.......+.+.+.
T Consensus       334 t~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~  413 (1281)
T KOG4222|consen  334 TFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDV  413 (1281)
T ss_pred             EeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEee
Confidence            99999999999999999987621        1112211 33458999999999999999998888887654444443321


Q ss_pred             cccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        312 KYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       312 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                      -.             .  .   -++|.+...+-+....+|..+.|.|.+.|.|.|.|.|+
T Consensus       414 ~~-------------~--~---rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl  455 (1281)
T KOG4222|consen  414 LT-------------D--S---RPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWL  455 (1281)
T ss_pred             ec-------------c--C---CCCceeeecccccccccCcccccChhhhCCCCCCchhh
Confidence            11             0  0   01122223333336678999999999999999999996

>KOG4194|consensus

Probab=99.93  E-value=4.3e-25  Score=187.66  Aligned_cols=231  Identities=21%  Similarity=0.354  Sum_probs=171.3

Q ss_pred             ceeeEecCCceee-ecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCce--eEe
Q psy14542         96 ELVEIASSNQVVV-DVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKY--HML  171 (371)
Q Consensus        96 ~~~~~~~~~~~~~-~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~--~~~  171 (371)
                      ..|.+...|.... ..|+.++|+|.+.+. ..+..+.|.++........-.          |...|-....++.+  ...
T Consensus       502 pkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ve----------d~a~~~~q~r~~~~~e~~~  571 (873)
T KOG4194|consen  502 PKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVE----------DFATFLSQNRNGTFGEREE  571 (873)
T ss_pred             CCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchh----------cchhhhhhhccCccchhhh
Confidence            3455555555444 789999999999663 234799999987643322110          11111100001111  011


Q ss_pred             ccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCC
Q psy14542        172 SSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL  251 (371)
Q Consensus       172 ~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~  251 (371)
                      ..+.|.+.++...| .|.|.|++.|..+......+   .++|.     ..|.+...|.+.. ...|+.+.|.|.+.|.|.
T Consensus       572 ~~~~L~L~nVt~td-~grYQCVvtN~FGStysqk~---KltV~-----~~PsFtktP~dlt-l~tg~mArl~CaAtG~P~  641 (873)
T KOG4194|consen  572 YTAILHLDNVTFTD-EGRYQCVVTNHFGSTYSQKA---KLTVN-----QAPSFTKTPEDLT-LRTGQMARLECAATGHPR  641 (873)
T ss_pred             hhheeeeeeeeccc-CceEEEEEecccCcchhhee---EEEee-----ccCccccCcccce-eecccceeeeeeccCCCC
Confidence            12579999999999 99999999999333455555   88888     8899999999998 999999999999999999


Q ss_pred             CceEEEeCCcc-cc--cCCceE--EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcccccccceEEEEee
Q psy14542        252 PTIKWYKQDSP-VE--ESDRIQ--RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQV  326 (371)
Q Consensus       252 ~~v~W~~~~~~-~~--~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~  326 (371)
                      |.|.|.++|+. .+  ...|..  .++..+.|.++..+|.|.|+|.|.|..|..+..++|.|.+.|.         +...
T Consensus       642 PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~---------f~~P  712 (873)
T KOG4194|consen  642 PEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPS---------FSIP  712 (873)
T ss_pred             cceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCc---------cccc
Confidence            99999999875 22  223333  3557899999999999999999999999999999999999988         4311


Q ss_pred             eeccccccccccccccceeeeeecCCeEEEeeeeecCCC-CccccC
Q psy14542        327 DEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL-PTIKYR  371 (371)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~i~W~  371 (371)
                      ..+                ..+..|+++.|.|.+.|.|+ |.+.||
T Consensus       713 L~~----------------~~V~~get~vlqC~a~~~~a~pr~~W~  742 (873)
T KOG4194|consen  713 LED----------------QLVVVGETLVLQCLAEGAPADPRLEWF  742 (873)
T ss_pred             ccc----------------eEEEecceEEEEEecCCCCCCcccccc
Confidence            111                16889999999999999988 999997

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.90  E-value=1.6e-22  Score=170.70  Aligned_cols=202  Identities=16%  Similarity=0.262  Sum_probs=137.9

Q ss_pred             ecCCcEEEEEEe-----cCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeec
Q psy14542        109 DVGHRIELHCRV-----SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDE  183 (371)
Q Consensus       109 ~~g~~v~l~C~~-----~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~  183 (371)
                      .+|+.+.|.|.+     .+.+. ++++|+|++.....    ..                      .......|.|.++..
T Consensus        39 ~~ge~~~l~C~~~~~~~~g~p~-~~i~W~K~g~~~~~----~~----------------------~~~~g~~l~i~~~~~   91 (326)
T PHA02785         39 LENEPVILPCPQINTLSSGYNI-LDILWEKRGADNDR----II----------------------PIDNGSNMLILNPTQ   91 (326)
T ss_pred             hcCCCEEEECCCccccccCCCC-ceEEEEECCCccce----EE----------------------EccCCceEEEcccCc
Confidence            679999999997     56665 89999998742110    00                      001113578999999


Q ss_pred             CCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEe-----ecCCCCceEEEe
Q psy14542        184 SDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSA-----QGNPLPTIKWYK  258 (371)
Q Consensus       184 ~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-----~~~p~~~v~W~~  258 (371)
                      +| +|.|+|.+.|. .+....+.   .|.|...   .++.+........ +.+|..+.|.|..     .+.|.++++|++
T Consensus        92 ~D-sG~Y~C~a~N~-~g~~~~s~---~L~V~~~---~~~~~~~~~~~~~-~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k  162 (326)
T PHA02785         92 SD-SGIYICITKNE-TYCDMMSL---NLTIVSV---SESNIDLISYPQI-VNERSTGEMVCPNINAFIASNVNADIIWSG  162 (326)
T ss_pred             cc-CeEEEEEEECC-CcceEEEE---EEEEEec---CCCccceeeccce-ecccCcEEEECCChhhcccCCCCceEEEcc
Confidence            99 99999999998 66656665   7777643   2222322222333 7789999999972     357889999987


Q ss_pred             CCcccccCCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCcee----EEEEEEecCcccccccceEEEEeeeeccccc
Q psy14542        259 QDSPVEESDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKM----QLFIQYAHGKYHMLSSGELIIHQVDEKNKRL  333 (371)
Q Consensus       259 ~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~----~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~  333 (371)
                      +. .+ ...++. ..++.|.|.++..+|.|.|+|.|.|..|....    .+.|.|..+..                    
T Consensus       163 ~~-~~-~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~--------------------  220 (326)
T PHA02785        163 HR-RL-RNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRII--------------------  220 (326)
T ss_pred             CC-cc-CCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCC--------------------
Confidence            54 33 233443 33578999999999999999999999887543    33444432111                    


Q ss_pred             cccccccccceeeeeecCCeEEEeeeeecCCCC---ccccC
Q psy14542        334 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLP---TIKYR  371 (371)
Q Consensus       334 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p---~i~W~  371 (371)
                        +|. +..|....+..|+.++|.|.+.|.|++   .+.|+
T Consensus       221 --pp~-~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~  258 (326)
T PHA02785        221 --PPT-MQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWI  258 (326)
T ss_pred             --Cce-ecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEE
Confidence              000 011223367789999999999998874   79995

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.84  E-value=2e-19  Score=142.45  Aligned_cols=147  Identities=20%  Similarity=0.316  Sum_probs=109.7

Q ss_pred             cEEEeccCcEEEEEEecCC----------CCCCeeEEEeCCEEE--ee------------C----CeeEEEEccCCcCCC
Q psy14542         20 QVVVDVGHRIELHCRVSPK----------RLSSAKAWLKDGLVL--RR------------N----SDEVLVLDRVQREDA   71 (371)
Q Consensus        20 ~~~~~~G~~v~l~C~~~~~----------~~~~~~~W~~~~~~~--~~------------~----~~~~l~i~~~~~~d~   71 (371)
                      ++.+.+|+++.|.|.+...          .....+.|+|++...  ..            .    ...+|+|.+++.+|+
T Consensus        31 ~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~Ds  110 (227)
T PHA02826         31 PVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDE  110 (227)
T ss_pred             eEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHC
Confidence            4789999999999954321          234589999987542  10            0    246899999999999


Q ss_pred             eEEEEEEEcCCCCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCC----CCceEEEeeCCEEeeeCCeeEEE
Q psy14542         72 GMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKR----LSSAKAWLKDGLVLRRNSDEVLV  147 (371)
Q Consensus        72 G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~----~~~~v~W~~~~~~~~~~~~~~~~  147 (371)
                      |.|+|.+.|..+.....+.|.|.. ++     ....+.+|+.++|.|.+.+.+    +.++++|+|++.++......   
T Consensus       111 G~Y~C~a~N~~~~~~~~i~L~V~~-~~-----~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~---  181 (227)
T PHA02826        111 GIYICTISSGNICEESTIRLTFDS-GT-----INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRI---  181 (227)
T ss_pred             EEEEEEEEECCcceEEEEEEEEec-CC-----ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCE---
Confidence            999999999888778888888862 21     122347899999999986321    23899999999988644221   


Q ss_pred             EcccCcCCCeeEEEEEeCCceeEe-ccceEEEEEeecCCccceeEEEeecc
Q psy14542        148 LDRVQREDAGMYQCHIEDGKYHML-SSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       148 ~~~~~~~~~g~y~~~~~~~~~~~~-~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                                           .+. ....|.|.+++.+| +|.|+|.+...
T Consensus       182 ---------------------~~~~~~~~L~I~~V~~~D-sG~YtC~a~~~  210 (227)
T PHA02826        182 ---------------------QLRNNNSTLVIKSATHDD-SGIYTCNLRFN  210 (227)
T ss_pred             ---------------------EEeCCCCEEEECcCCHHh-CEEEEEEEEEe
Confidence                                 111 12579999999999 99999999976

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.83  E-value=2e-19  Score=142.39  Aligned_cols=161  Identities=20%  Similarity=0.269  Sum_probs=111.3

Q ss_pred             eeecCCcEEEEEEecCCCC----------CceEEEeeCCEEee--eCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccc
Q psy14542        107 VVDVGHRIELHCRVSPKRL----------SSAKAWLKDGLVLR--RNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG  174 (371)
Q Consensus       107 ~~~~g~~v~l~C~~~~~~~----------~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~  174 (371)
                      .+.+|+++.|.|.+.+.+.          ...+.|+|.+...-  ..+... .+....            ..+. ...+.
T Consensus        33 ~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~-~~~~i~------------~~~~-~~r~~   98 (227)
T PHA02826         33 YAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGART-KIKKIT------------HNEI-GDRSE   98 (227)
T ss_pred             EecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCcc-cccccc------------ccce-ecCCC
Confidence            4479999999999866432          25899999875321  110000 000000            0000 01236


Q ss_pred             eEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-----C
Q psy14542        175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-----N  249 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-----~  249 (371)
                      .|.|.+++.+| +|.|+|.+.|. .+....+.   .|.|.     .++      .... +..|+.+.|.|.+.+     .
T Consensus        99 ~L~I~~v~~~D-sG~Y~C~a~N~-~~~~~~~i---~L~V~-----~~~------~~~~-~~~G~~v~L~C~~~~~~~~~~  161 (227)
T PHA02826         99 NLWIGNVINID-EGIYICTISSG-NICEESTI---RLTFD-----SGT------INYQ-FNSGKDSKLHCYGTDGISSTF  161 (227)
T ss_pred             eEEECCCChHH-CEEEEEEEEEC-CcceEEEE---EEEEe-----cCC------ccce-EecCCCEEEEeeCCCCccccC
Confidence            89999999999 99999999997 66655555   66664     211      1123 778999999999753     4


Q ss_pred             CCCceEEEeCCcccccCCceEE--ecceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542        250 PLPTIKWYKQDSPVEESDRIQR--IGSSLSISHVEESDSGVWNCVANNSEG  298 (371)
Q Consensus       250 p~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~~g  298 (371)
                      |.|+++|++++..+....++..  .++.|.|.++..+|+|.|+|.|....+
T Consensus       162 p~p~I~WyKng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~  212 (227)
T PHA02826        162 KDYTLTWYKNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNKN  212 (227)
T ss_pred             CCceEEEEECCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeEC
Confidence            5789999999999877666653  345899999999999999999998653

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.75  E-value=2.1e-17  Score=111.46  Aligned_cols=88  Identities=31%  Similarity=0.508  Sum_probs=76.6

Q ss_pred             ccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        221 SAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       221 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      +|.+...+.+.. +..|+.+.|.|.+.|.|.|.++|++++..+....++...++.|.|.++..+|+|.|+|.|.|..|..
T Consensus         1 ~p~i~~~~~~~~-~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~   79 (88)
T cd05851           1 PADINVKFKDTY-ALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKD   79 (88)
T ss_pred             CCceEEccccEE-EeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCce
Confidence            355666666666 8999999999999999999999999998887666666667789999999999999999999999999


Q ss_pred             eeEEEEEEe
Q psy14542        301 KMQLFIQYA  309 (371)
Q Consensus       301 ~~~~~l~v~  309 (371)
                      ...+.|.|.
T Consensus        80 ~~~~~l~V~   88 (88)
T cd05851          80 KHQARVYVQ   88 (88)
T ss_pred             EEEEEEEEC
Confidence            999888773

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.74  E-value=3.4e-17  Score=112.62  Aligned_cols=90  Identities=21%  Similarity=0.289  Sum_probs=78.2

Q ss_pred             ceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe----cceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542        223 AKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVANNSEG  298 (371)
Q Consensus       223 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g  298 (371)
                      .|...+.... +..|+.+.|.|.+.|.|++++.|++++..+..+.++...    .+.|.|.++..+|+|.|+|.|.|..|
T Consensus         2 ~~~~~p~~~~-v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G   80 (98)
T cd05762           2 QIIQFPEDMK-VRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG   80 (98)
T ss_pred             ceEECCcCEE-EECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence            3444455555 999999999999999999999999999999877666532    46799999999999999999999999


Q ss_pred             CceeEEEEEEecCcc
Q psy14542        299 QDKMQLFIQYAHGKY  313 (371)
Q Consensus       299 ~~~~~~~l~v~~~p~  313 (371)
                      ....++.|.|.++|.
T Consensus        81 ~~~~~~~l~V~~~P~   95 (98)
T cd05762          81 SRQAQVNLTVVDKPD   95 (98)
T ss_pred             ceeEEEEEEEecCCC
Confidence            999999999998876

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>KOG3515|consensus

Probab=99.68  E-value=7.3e-16  Score=137.85  Aligned_cols=315  Identities=14%  Similarity=0.170  Sum_probs=191.5

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----CeeEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----SDEVLVLDRVQREDAGMYQCHVSADDDS   84 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   84 (371)
                      ..|.....+.. ..+..|+.|.|.|.+..++|...+.|++.+......    ....|.........-+.|.|.+.+..+.
T Consensus         6 ~~pv~~~~~l~-~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~   84 (741)
T KOG3515|consen    6 NVPVCESSSLT-VGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHGRYATIADPTLVTTGDVRDTVAELNCRAFNSVGM   84 (741)
T ss_pred             CCccccCCCCC-hhhccCCcceeeeecCCCCCCcceEEEecCcccccccccccCCceeeecchhhhhhhhhhhhcccccC
Confidence            34444444455 489999999999988888899999999987655522    5556777777777778999999987544


Q ss_pred             e-EEEEEEEEecceeeEecCCceeeecCCcEEEEEEec-CCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEE
Q psy14542         85 A-QMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVS-PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH  162 (371)
Q Consensus        85 ~-~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~  162 (371)
                      . .....+.+...+......-......+..+.+.|.+. +..+.++++|..+.............+.+.-  ..+     
T Consensus        85 ~~~~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a--~gs-----  157 (741)
T KOG3515|consen   85 PSRCPMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGA--LGS-----  157 (741)
T ss_pred             ceecceeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccc--cCc-----
Confidence            3 455666766333333322233336788899999653 3334489999998876544331111111000  000     


Q ss_pred             EeCCceeEeccceEEEEEeecCCccceeEEEeeccc--cceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeE
Q psy14542        163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKL--TGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESV  240 (371)
Q Consensus       163 ~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~--~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~  240 (371)
                            .....+.+.+...+.++ .|.|+|.+.+..  .+......   .+.+...  .....+........ ..+|+.+
T Consensus       158 ------s~t~~s~l~~~v~Rka~-~g~~tC~A~nr~s~~l~~~~~~---~i~v~~~--~~~~~~~~~~~~qs-F~~g~~i  224 (741)
T KOG3515|consen  158 ------SYTEPSLLKQTVSRKAD-NGNYTCPANNRNSPGLSFAKQL---TIIVEAP--CKGIGITGAQEQQS-FTEGQTI  224 (741)
T ss_pred             ------eeccccceeeEEEEecC-CceeEcccccccCcccccccee---Eeecccc--cccceecchhhcCc-ccccceE
Confidence                  11223567888888888 999999999851  33333333   3333321  12222222222233 7899999


Q ss_pred             EEEEEee-cCCCCceEEEeCCcccccCCceEE------ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542        241 ILPCSAQ-GNPLPTIKWYKQDSPVEESDRIQR------IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       241 ~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      .|.|.+. ++|.+.++|+++......++....      ....+.+..-..++.-...|.+.|   ...++..+.+..++.
T Consensus       225 nlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n---~~~~~~~tav~~~~~  301 (741)
T KOG3515|consen  225 NLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN---LLAASQITAVQVKPT  301 (741)
T ss_pred             EEEehhhcCCcchhhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC---ccccceeeecccccc
Confidence            9999865 588899999999887655422211      112344444444555677899998   223333344444444


Q ss_pred             cccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeec-CCCCccccC
Q psy14542        314 HMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLPTIKYR  371 (371)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p~i~W~  371 (371)
                      .         ..+..+..               .+..|+...+.|...+ +|++.+.|+
T Consensus       302 ~---------~~Ist~~~---------------~ls~g~s~r~~c~~sss~p~~~i~w~  336 (741)
T KOG3515|consen  302 A---------VPISTSDS---------------GLSSGRSARSSCVSSSSKPPAHIAWY  336 (741)
T ss_pred             c---------ccccCccc---------------ccccccccccceeccCCCCccceeee
Confidence            1         10111111               4668999999988765 688899996

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.67  E-value=5.1e-16  Score=100.29  Aligned_cols=72  Identities=25%  Similarity=0.492  Sum_probs=65.2

Q ss_pred             CCeEEEEEEeecCCCCceEEEeCCcccccCCceEE-ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        237 DESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR-IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       237 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      |+.+.|.|.+.|.|.|.+.|++++..+..+.++.. .+++|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            67899999999999999999999998877777764 5679999999999999999999999999999988865

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.67  E-value=6.8e-16  Score=103.60  Aligned_cols=79  Identities=29%  Similarity=0.521  Sum_probs=71.6

Q ss_pred             eeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        229 HRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       229 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      .+.. +..|+.+.|.|.+.|.|.|.+.|++++..+....++...++.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         7 ~~~~-~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   85 (85)
T cd05728           7 SDTE-ADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASAELAV   85 (85)
T ss_pred             CccE-EcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence            3444 889999999999999999999999999998887778888889999999999999999999999999988888764

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.66  E-value=5e-16  Score=101.35  Aligned_cols=73  Identities=30%  Similarity=0.465  Sum_probs=64.6

Q ss_pred             cCCeEEEEEEeecCCCCceEEEeCCcccccCCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        236 KDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       236 ~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      +|+.+.|.|.+.|.|.|.+.|++++..+....+.. ..+++|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            58899999999999999999999999887665544 35678999999999999999999999999999888865

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.66  E-value=2e-15  Score=102.33  Aligned_cols=84  Identities=33%  Similarity=0.528  Sum_probs=71.4

Q ss_pred             eeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542        225 MFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL  304 (371)
Q Consensus       225 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  304 (371)
                      ...+.... +.+|+.+.|.|.+.|.|.|.+.|++++..+.........++.|.|.++..+|+|.|+|.|.|..|....++
T Consensus         5 ~~~p~~~~-~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~   83 (88)
T cd04968           5 VVFPKDTY-ALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQG   83 (88)
T ss_pred             EECCCceE-EeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcEEEEE
Confidence            33344444 88999999999999999999999999887766555556678999999999999999999999999999888


Q ss_pred             EEEEe
Q psy14542        305 FIQYA  309 (371)
Q Consensus       305 ~l~v~  309 (371)
                      .|.|.
T Consensus        84 ~l~V~   88 (88)
T cd04968          84 RIYVQ   88 (88)
T ss_pred             EEEEC
Confidence            88763

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.64  E-value=2.3e-15  Score=103.49  Aligned_cols=76  Identities=20%  Similarity=0.341  Sum_probs=66.7

Q ss_pred             eecCCeEEEEEEeec-CCCCceEEEeCCcccccCCceE-E--------ecceEEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542        234 VKKDESVILPCSAQG-NPLPTIKWYKQDSPVEESDRIQ-R--------IGSSLSISHVEESDSGVWNCVANNSEGQDKMQ  303 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~-~--------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  303 (371)
                      +..|+++.|.|.+.| .|+|.+.|+|||.++....... .        ..+.|.|..+..+|+|.|+|.|.|..|..+.+
T Consensus        15 v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t   94 (101)
T cd04975          15 VNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLT   94 (101)
T ss_pred             EECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEE
Confidence            889999999999999 8899999999999887554422 1        13679999999999999999999999999999


Q ss_pred             EEEEEe
Q psy14542        304 LFIQYA  309 (371)
Q Consensus       304 ~~l~v~  309 (371)
                      +.|.|.
T Consensus        95 ~~L~V~  100 (101)
T cd04975          95 FELYVN  100 (101)
T ss_pred             EEEEEE
Confidence            999886

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.63  E-value=3e-15  Score=98.22  Aligned_cols=72  Identities=28%  Similarity=0.547  Sum_probs=63.7

Q ss_pred             CCeEEEEEEeecCCCCceEEEeCCcccccC---CceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        237 DESVILPCSAQGNPLPTIKWYKQDSPVEES---DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       237 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      |+++.|.|.+.|.|.|+++|+++|..+...   .++...++.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            678999999999999999999999877653   244556788999999999999999999999999998888876

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.63  E-value=4e-15  Score=101.60  Aligned_cols=75  Identities=27%  Similarity=0.500  Sum_probs=66.3

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE--e---cceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR--I---GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~--~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      +.+|+++.|.|.+.|.|.|.+.|++++..+....++..  .   ..+|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus        13 v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v   92 (92)
T cd05737          13 IMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVSV   92 (92)
T ss_pred             EeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEeC
Confidence            88999999999999999999999999998877666543  2   237999999999999999999999999998888765

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.63  E-value=4.8e-15  Score=99.88  Aligned_cols=77  Identities=25%  Similarity=0.375  Sum_probs=66.5

Q ss_pred             CCeEEEEEEeecCCCCceEEEeCCcccccC-CceEEe--------cceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEE
Q psy14542        237 DESVILPCSAQGNPLPTIKWYKQDSPVEES-DRIQRI--------GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ  307 (371)
Q Consensus       237 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~--------~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  307 (371)
                      |+.+.|.|.+.|.|++.+.|++++..+... .++...        .+.|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            688999999999999999999999877543 344321        15799999999999999999999999999999999


Q ss_pred             EecCcc
Q psy14542        308 YAHGKY  313 (371)
Q Consensus       308 v~~~p~  313 (371)
                      |.++|.
T Consensus        81 V~~~P~   86 (88)
T cd05735          81 VQEPPD   86 (88)
T ss_pred             EeCCCC
Confidence            998876

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.63  E-value=2.3e-15  Score=94.66  Aligned_cols=66  Identities=26%  Similarity=0.438  Sum_probs=57.0

Q ss_pred             EEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542        240 VILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA  309 (371)
Q Consensus       240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  309 (371)
                      +.|.|.+.|.|.|.+.|+|||..+....    ..+.|.|.++..+|+|.|+|.|.|..|....++.+.+.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~----~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGKH----SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcccC----CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            4689999999999999999999886432    35689999999999999999999999988777777653

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.62  E-value=5.3e-15  Score=99.75  Aligned_cols=82  Identities=21%  Similarity=0.296  Sum_probs=70.6

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHVSADDDS   84 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   84 (371)
                      +|.+.+.+.+ ..+.+|+.+.|.| ...+.|.+.+.|+|++..+...     ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 ~p~i~~~~~~-~~~~~G~~v~l~C-~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   78 (88)
T cd05851           1 PADINVKFKD-TYALKGQNVTLEC-FALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGK   78 (88)
T ss_pred             CCceEEcccc-EEEeCCCcEEEEE-EecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCc
Confidence            4678888888 8899999999999 5678899999999988765433     4458999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy14542         85 AQMSAQVIL   93 (371)
Q Consensus        85 ~~~~~~l~v   93 (371)
                      ....+.|.|
T Consensus        79 ~~~~~~l~V   87 (88)
T cd05851          79 DKHQARVYV   87 (88)
T ss_pred             eEEEEEEEE
Confidence            988888876

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.62  E-value=4.5e-15  Score=95.81  Aligned_cols=70  Identities=30%  Similarity=0.552  Sum_probs=61.6

Q ss_pred             eEEEEEEeecCCCCceEEEeCCcccccCCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        239 SVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       239 ~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      ++.|.|.+.|.|.|.++|++++..+....++. ..++.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            37899999999999999999999887766655 34567999999999999999999999999999888865

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.62  E-value=3e-15  Score=96.95  Aligned_cols=69  Identities=28%  Similarity=0.438  Sum_probs=59.0

Q ss_pred             EEEEEEeecCCCCceEEEeCCccccc-CCceEE--ec-c--eEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        240 VILPCSAQGNPLPTIKWYKQDSPVEE-SDRIQR--IG-S--SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       240 ~~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~--~~-~--~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      +.|.|.+.|.|.|.+.|++++..+.. +.++..  .+ +  +|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            47899999999999999999998874 345543  12 2  7999999999999999999999999999988865

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.62  E-value=1e-14  Score=100.28  Aligned_cols=83  Identities=22%  Similarity=0.327  Sum_probs=72.7

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSAD   81 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~   81 (371)
                      |.|...|.. +.+.+|+.+.|.|.+ .+.|.+.+.|+|++..+...         ..+.|.|.++..+|+|.|+|.+.|.
T Consensus         1 p~~~~~p~~-~~v~~G~~v~l~C~~-~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~   78 (98)
T cd05762           1 PQIIQFPED-MKVRAGESVELFCKV-TGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENK   78 (98)
T ss_pred             CceEECCcC-EEEECCCEEEEEEEE-cccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcC
Confidence            346667777 999999999999965 57888999999999988643         4678999999999999999999999


Q ss_pred             CCCeEEEEEEEEec
Q psy14542         82 DDSAQMSAQVILGG   95 (371)
Q Consensus        82 ~~~~~~~~~l~v~~   95 (371)
                      .|....++.|.|.+
T Consensus        79 ~G~~~~~~~l~V~~   92 (98)
T cd05762          79 LGSRQAQVNLTVVD   92 (98)
T ss_pred             CCceeEEEEEEEec
Confidence            99999999999983

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.62  E-value=6.9e-15  Score=100.47  Aligned_cols=86  Identities=31%  Similarity=0.550  Sum_probs=73.4

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe----cceEEEeccCCCCCeEEEEEEEc
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      .+|.+...+.... +..|+.+.|.|.+.|.|.|.+.|+++|..+..+.++...    .+.|.|.++..+|+|.|+|.|.|
T Consensus         2 ~~~~~~~~p~~~~-~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   80 (92)
T cd05747           2 LPATILTKPRSLT-VSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVEN   80 (92)
T ss_pred             CCCcccccCccEE-EeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEc
Confidence            3566666666666 999999999999999999999999999988776665532    35899999999999999999999


Q ss_pred             CCCCceeEEEE
Q psy14542        296 SEGQDKMQLFI  306 (371)
Q Consensus       296 ~~g~~~~~~~l  306 (371)
                      ..|....++.|
T Consensus        81 ~~G~~~~~~~l   91 (92)
T cd05747          81 SEGKQEAQFTL   91 (92)
T ss_pred             CCCCEeEEEEe
Confidence            99998888776

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.62  E-value=5e-15  Score=102.08  Aligned_cols=76  Identities=21%  Similarity=0.344  Sum_probs=66.8

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE----------ecceEEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR----------IGSSLSISHVEESDSGVWNCVANNSEGQDKMQ  303 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  303 (371)
                      +..|+.+.|.|.+.|+|+|.+.|+|+|.++..+.+...          ..++|.|.++..+|+|.|+|.|.|..|..+.+
T Consensus        15 ~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t   94 (101)
T cd05859          15 ANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYT   94 (101)
T ss_pred             EecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEEE
Confidence            88899999999999999999999999999876653221          13579999999999999999999999999999


Q ss_pred             EEEEEe
Q psy14542        304 LFIQYA  309 (371)
Q Consensus       304 ~~l~v~  309 (371)
                      +.|.|.
T Consensus        95 ~~l~V~  100 (101)
T cd05859          95 FALQIQ  100 (101)
T ss_pred             EEEEEE
Confidence            998875

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.62  E-value=6.7e-15  Score=98.62  Aligned_cols=75  Identities=29%  Similarity=0.525  Sum_probs=65.9

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccC-CceEEe----cceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEES-DRIQRI----GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      +..|+.+.|.|.+.|.|.|.+.|++++.++... .++...    .+.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         7 v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V   86 (86)
T cd05894           7 VVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV   86 (86)
T ss_pred             EEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEEC
Confidence            889999999999999999999999999988754 345422    357999999999999999999999999998888865

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.62  E-value=3e-15  Score=96.41  Aligned_cols=70  Identities=31%  Similarity=0.582  Sum_probs=62.1

Q ss_pred             EEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542        240 VILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA  309 (371)
Q Consensus       240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  309 (371)
                      +.|.|.+.|.|.|.+.|+++|..+....++...+++|.|.++..+|+|.|+|.|.|..|.....+.+.+.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            3689999999999999999999988776666677899999999999999999999999998777777664

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.61  E-value=7.3e-15  Score=101.19  Aligned_cols=77  Identities=29%  Similarity=0.609  Sum_probs=67.2

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccC-CceEE--ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEec
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEES-DRIQR--IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAH  310 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  310 (371)
                      +..|+.+.|.|.+.|.|.|.+.|+++|..+... .++..  .++.|.|.++..+|.|.|+|.|.|..|....++.|.|..
T Consensus        15 ~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~   94 (95)
T cd05730          15 ANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVFA   94 (95)
T ss_pred             EeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEEe
Confidence            789999999999999999999999999887665 33432  335799999999999999999999999999999998864

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.60  E-value=6.2e-15  Score=95.95  Aligned_cols=72  Identities=32%  Similarity=0.495  Sum_probs=64.2

Q ss_pred             CCeEEEEEEeecCCCCceEEEeCCcccccCCceEE-ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        237 DESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR-IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       237 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      |+.+.|.|.+.|.|.|.++|++++..+....++.. .++.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            67899999999999999999999998877766663 4468999999999999999999999999999888865

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.60  E-value=7.7e-15  Score=96.00  Aligned_cols=72  Identities=32%  Similarity=0.551  Sum_probs=62.3

Q ss_pred             CCeEEEEEEeecCCCCceEEEeCCcccccCC---ceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        237 DESVILPCSAQGNPLPTIKWYKQDSPVEESD---RIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       237 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      |+.+.|.|.+.|.|.|.|+|+++|.++....   .....++.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            6789999999999999999999999875432   22344568999999999999999999999999999999887

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.60  E-value=1.3e-14  Score=95.84  Aligned_cols=74  Identities=22%  Similarity=0.498  Sum_probs=66.3

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      +.+|+.+.|.|.+.+. .+.+.|+++|.++....++...++.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus         6 ~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V   79 (79)
T cd04973           6 AHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV   79 (79)
T ss_pred             ecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence            7899999999999886 5689999999999887777777788999999999999999999999999888877764

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.59  E-value=1e-14  Score=99.72  Aligned_cols=86  Identities=37%  Similarity=0.643  Sum_probs=74.3

Q ss_pred             cceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe----cceEEEeccCCCCCeEEEEEEEcCC
Q psy14542        222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVANNSE  297 (371)
Q Consensus       222 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~  297 (371)
                      |.+...+.... +..|+.+.|.|.+.+.|.+++.|++++..+..+.++...    ..+|.|.++..+|+|.|+|.|.|..
T Consensus         1 P~~~~~~~~~~-v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~   79 (90)
T PF07679_consen    1 PVFTKKPKDVT-VKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSS   79 (90)
T ss_dssp             EEEEEESSEEE-EETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETT
T ss_pred             CEEEEecCCEE-EeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECC
Confidence            44555566666 999999999999999999999999999999887776632    3579999999999999999999999


Q ss_pred             CCceeEEEEEE
Q psy14542        298 GQDKMQLFIQY  308 (371)
Q Consensus       298 g~~~~~~~l~v  308 (371)
                      |..+.++.|.|
T Consensus        80 g~~~~~~~l~V   90 (90)
T PF07679_consen   80 GEATASVNLTV   90 (90)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CEEEEEEEEEC
Confidence            99999988876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.59  E-value=7.4e-15  Score=95.32  Aligned_cols=69  Identities=26%  Similarity=0.451  Sum_probs=58.6

Q ss_pred             EEEEEEeecCCCCceEEEeCCcccccC-CceEEe-cc----eEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        240 VILPCSAQGNPLPTIKWYKQDSPVEES-DRIQRI-GS----SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~-~~----~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      +.|.|.+.|.|.|.+.|++++..+... .++... ++    .|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            478999999999999999999988653 444432 21    6999999999999999999999999999888865

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.59  E-value=1.3e-14  Score=95.73  Aligned_cols=75  Identities=17%  Similarity=0.300  Sum_probs=63.5

Q ss_pred             CeEEEEEEeec--CCCCceEEEeCCccccc---CCceEE-----ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEE
Q psy14542        238 ESVILPCSAQG--NPLPTIKWYKQDSPVEE---SDRIQR-----IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ  307 (371)
Q Consensus       238 ~~~~l~C~~~~--~p~~~v~W~~~~~~~~~---~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  307 (371)
                      +++.|.|.+.+  .+.+.|.|++||..+..   +.++..     ..+.|.|.+++..|+|+|+|.|.|..++...++.|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            35789999976  44778999999998862   234443     346899999999999999999999999999999999


Q ss_pred             EecCc
Q psy14542        308 YAHGK  312 (371)
Q Consensus       308 v~~~p  312 (371)
                      |..||
T Consensus        81 V~~pP   85 (85)
T cd05853          81 VRGPP   85 (85)
T ss_pred             EecCC
Confidence            99887

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.59  E-value=1.7e-14  Score=99.48  Aligned_cols=86  Identities=24%  Similarity=0.549  Sum_probs=67.2

Q ss_pred             cceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccC-----CceEE----ecceEEEeccCCCCCeEEEEE
Q psy14542        222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEES-----DRIQR----IGSSLSISHVEESDSGVWNCV  292 (371)
Q Consensus       222 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-----~~~~~----~~~~l~i~~~~~~d~G~Y~C~  292 (371)
                      |.+...+.... +..|+.+.|.|.+.|.|.|.++|++++..+...     .++..    ..+.|.|.++..+|+|.|+|.
T Consensus         3 p~i~~~~~~~~-~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (97)
T cd05869           3 PKITYVENQTA-MELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT   81 (97)
T ss_pred             ceEEEccCceE-EEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence            44444444443 566899999999999999999999988766432     22221    125799999999999999999


Q ss_pred             EEcCCCCceeEEEEEE
Q psy14542        293 ANNSEGQDKMQLFIQY  308 (371)
Q Consensus       293 a~n~~g~~~~~~~l~v  308 (371)
                      |.|..|....++.|.|
T Consensus        82 A~N~~G~~~~~~~l~v   97 (97)
T cd05869          82 ASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EecCCCCeeEEEEEEC
Confidence            9999999999988865

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.59  E-value=3e-14  Score=97.23  Aligned_cols=75  Identities=23%  Similarity=0.536  Sum_probs=62.3

Q ss_pred             eecCCeEEEEEEeecCCC-CceEEEe-CCccccc-CCceEE-e----cceEEEeccCCCCCeEEEEEEEcCC-CCceeEE
Q psy14542        234 VKKDESVILPCSAQGNPL-PTIKWYK-QDSPVEE-SDRIQR-I----GSSLSISHVEESDSGVWNCVANNSE-GQDKMQL  304 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~-~~v~W~~-~~~~~~~-~~~~~~-~----~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~~~~~  304 (371)
                      +..|+++.|.|.+.|.|. |.+.|++ ++..+.. +.++.. .    .++|.|.++..+|+|.|+|.|.|.. |....++
T Consensus        12 v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~   91 (96)
T cd05865          12 ISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATV   91 (96)
T ss_pred             ECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEE
Confidence            888999999999999995 7999998 6766655 334432 1    2589999999999999999999996 8888888


Q ss_pred             EEEE
Q psy14542        305 FIQY  308 (371)
Q Consensus       305 ~l~v  308 (371)
                      .|.|
T Consensus        92 ~l~v   95 (96)
T cd05865          92 NVKI   95 (96)
T ss_pred             EEEE
Confidence            8876

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.58  E-value=2.1e-14  Score=95.96  Aligned_cols=75  Identities=20%  Similarity=0.352  Sum_probs=63.0

Q ss_pred             CeEEEEEEeecCCCC--ceEEEeCCcccccC---CceE-----EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEE
Q psy14542        238 ESVILPCSAQGNPLP--TIKWYKQDSPVEES---DRIQ-----RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ  307 (371)
Q Consensus       238 ~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~---~~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  307 (371)
                      +.++|.|.+.|+|.|  .+.|++++..+...   .++.     ...++|.|.+++..|+|.|+|.|.|..|...+++.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            358999999999987  58999999877542   2321     1346899999999999999999999999999999999


Q ss_pred             EecCc
Q psy14542        308 YAHGK  312 (371)
Q Consensus       308 v~~~p  312 (371)
                      |..+|
T Consensus        81 V~~~P   85 (85)
T cd05854          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            98876

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.58  E-value=1.6e-14  Score=92.22  Aligned_cols=68  Identities=28%  Similarity=0.489  Sum_probs=58.2

Q ss_pred             CCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542        237 DESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI  306 (371)
Q Consensus       237 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  306 (371)
                      |+.+.|.|.+.|.|.|.|.|++++..+....++......|.|.++.  |+|.|+|.|.|..|....++.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            6789999999999999999999999887666555555679998874  7999999999999998877765

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.58  E-value=1.6e-14  Score=95.18  Aligned_cols=72  Identities=33%  Similarity=0.561  Sum_probs=63.2

Q ss_pred             CCeEEEEEEeecCCCCceEEEeCCcccccCCc---eEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        237 DESVILPCSAQGNPLPTIKWYKQDSPVEESDR---IQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       237 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      |+.+.|.|.+.|.|.|.+.|++++..+.....   ....++.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            67899999999999999999999988765542   3345678999999999999999999999999999888876

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.58  E-value=1.1e-14  Score=92.74  Aligned_cols=68  Identities=28%  Similarity=0.494  Sum_probs=56.9

Q ss_pred             EEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        240 VILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      +.|.|.+.|.|.|.+.|+++|.++....++ ..+..|.|.++..+|+|.|+|.|.|..|......++.+
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~-~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF-KRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEE-ccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            368999999999999999999998765443 24568999999999999999999999998766655544

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.57  E-value=1.9e-14  Score=92.51  Aligned_cols=69  Identities=28%  Similarity=0.495  Sum_probs=58.9

Q ss_pred             EEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        240 VILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      +.|.|.+.|.|.|.+.|++++..+.........++.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            478999999999999999998877554333345678999999999999999999999999988888765

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.57  E-value=2.1e-14  Score=93.85  Aligned_cols=70  Identities=33%  Similarity=0.543  Sum_probs=60.9

Q ss_pred             eEEEEEEeecCCCCceEEEeCCcccccCCceEEe----cceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        239 SVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       239 ~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      .+.|.|.+.|.|.|.+.|+++|..+....++...    .+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            3689999999999999999999988666665532    357999999999999999999999999999888865

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.56  E-value=1.5e-14  Score=92.89  Aligned_cols=67  Identities=39%  Similarity=0.692  Sum_probs=59.4

Q ss_pred             EEEEEEeecCCCCceEEEeCCcccccCCceEE-ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542        240 VILPCSAQGNPLPTIKWYKQDSPVEESDRIQR-IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI  306 (371)
Q Consensus       240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  306 (371)
                      +.|.|.+.|.|.|.+.|++++..+....++.. .++.|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            46899999999999999999998877766654 46789999999999999999999999998888766

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.56  E-value=2.2e-14  Score=92.59  Aligned_cols=69  Identities=30%  Similarity=0.610  Sum_probs=59.1

Q ss_pred             EEEEEEeecCCCCceEEEeCCcccccCCc-eEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        240 VILPCSAQGNPLPTIKWYKQDSPVEESDR-IQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      +.|.|.+.|.|.|.+.|++++..+..... ....+++|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            46899999999999999999987765432 2245578999999999999999999999999999888876

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.56  E-value=3.2e-14  Score=92.73  Aligned_cols=69  Identities=26%  Similarity=0.388  Sum_probs=58.2

Q ss_pred             EEEEEEeecCCCCceEEEeCCcccccC-CceEEe-c----ceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        240 VILPCSAQGNPLPTIKWYKQDSPVEES-DRIQRI-G----SSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~-~----~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      +.|.|.+.|.|.|.+.|++++..+... .++... .    .+|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            478999999999999999999988743 444421 1    16999999999999999999999999998888865

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.56  E-value=3e-14  Score=96.02  Aligned_cols=75  Identities=31%  Similarity=0.542  Sum_probs=64.8

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceE-----EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ-----RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      +..|+.+.|.|.+.|.|.|.+.|+++|..+....+..     .....|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         6 v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   85 (85)
T cd05857           6 VPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV   85 (85)
T ss_pred             cCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEEC
Confidence            7889999999999999999999999999887654321     22347999999999999999999999999999888865

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.56  E-value=7.2e-14  Score=98.18  Aligned_cols=78  Identities=27%  Similarity=0.452  Sum_probs=65.6

Q ss_pred             cCCeEEEEEEeecCCCCceEEEeCCcccccC-CceEE--------ecceEEEeccC-CCCCeEEEEEEEcCCCCceeEEE
Q psy14542        236 KDESVILPCSAQGNPLPTIKWYKQDSPVEES-DRIQR--------IGSSLSISHVE-ESDSGVWNCVANNSEGQDKMQLF  305 (371)
Q Consensus       236 ~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~--------~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~~~~  305 (371)
                      .|..+.|.|.+.|.|.+.+.|++++..+... .++..        ..+.|.|.++. .+|.|.|+|.|.|..|.....+.
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~  101 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ  101 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence            5688999999999999999999999887643 33321        13579999987 68999999999999999999999


Q ss_pred             EEEecCcc
Q psy14542        306 IQYAHGKY  313 (371)
Q Consensus       306 l~v~~~p~  313 (371)
                      |.|..+|.
T Consensus       102 L~~~~~p~  109 (109)
T cd05773         102 LVSTSRPD  109 (109)
T ss_pred             EEecCCCC
Confidence            99988773

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.55  E-value=4.7e-14  Score=95.91  Aligned_cols=75  Identities=21%  Similarity=0.395  Sum_probs=64.6

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceE----EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ----RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      +..|+.+.|.|.+.|.|.|.+.|++++..+.......    .....|.|.++..+|.|.|+|.|.|..|....++.|.|
T Consensus        12 v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~v   90 (90)
T cd04972          12 VYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVTV   90 (90)
T ss_pred             EcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEeC
Confidence            8899999999999999999999999998776544322    12357999999999999999999999999998888764

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.55  E-value=4.1e-14  Score=91.88  Aligned_cols=67  Identities=25%  Similarity=0.566  Sum_probs=57.0

Q ss_pred             EEEEEeecCCCCceEEEeCCcccccCCceE---------EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEE
Q psy14542        241 ILPCSAQGNPLPTIKWYKQDSPVEESDRIQ---------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ  307 (371)
Q Consensus       241 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  307 (371)
                      .|.|.+.|+|.|+++|+++|..+..+.+..         ...+.|.|.++..+|+|.|+|.|+|..|+..+++.+.
T Consensus         2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            367999999999999999999998765432         1235799999999999999999999999998887764

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.54  E-value=1e-13  Score=94.56  Aligned_cols=81  Identities=23%  Similarity=0.465  Sum_probs=65.3

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEe-CCEEEee-C----------CeeEEEEccCCcCCCeEEEEEE
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLK-DGLVLRR-N----------SDEVLVLDRVQREDAGMYQCHV   78 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~-~~~~~~~-~----------~~~~l~i~~~~~~d~G~Y~C~~   78 (371)
                      ++.+.|.. ..+.+|+++.|.|.+ .+.| .+.+.|++ ++..+.. .          ..++|.|.+++.+|+|.|+|.|
T Consensus         2 ~~~~~p~~-~~v~~G~~v~l~C~v-~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A   79 (96)
T cd05865           2 QVDIVPSQ-GEISVGESKFFLCQV-AGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVV   79 (96)
T ss_pred             cEEEeCCc-cEECCCCeEEEEEEE-eCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEE
Confidence            56778888 789999999999965 5566 47999998 6765433 1          1368999999999999999999


Q ss_pred             EcCC-CCeEEEEEEEEe
Q psy14542         79 SADD-DSAQMSAQVILG   94 (371)
Q Consensus        79 ~~~~-~~~~~~~~l~v~   94 (371)
                      .|.. |...+++.|.|+
T Consensus        80 ~N~~~g~~~~s~~l~v~   96 (96)
T cd05865          80 SNEDEGESEATVNVKIF   96 (96)
T ss_pred             EcCCCCcEEEEEEEEEC
Confidence            9986 778888888763

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.54  E-value=5.6e-14  Score=94.46  Aligned_cols=75  Identities=19%  Similarity=0.313  Sum_probs=62.7

Q ss_pred             CeEEEEEEeecCCCC--ceEEEeCCcccccCC---ceE-----EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEE
Q psy14542        238 ESVILPCSAQGNPLP--TIKWYKQDSPVEESD---RIQ-----RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ  307 (371)
Q Consensus       238 ~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~---~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  307 (371)
                      +++.|.|.+.|.|.|  .+.|+++|..+....   ++.     ...+.|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            468899999999887  579999998775432   111     2456899999999999999999999999999999999


Q ss_pred             EecCc
Q psy14542        308 YAHGK  312 (371)
Q Consensus       308 v~~~p  312 (371)
                      |..+|
T Consensus        81 V~~pP   85 (85)
T cd04970          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            99876

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.53  E-value=2.3e-13  Score=100.72  Aligned_cols=125  Identities=20%  Similarity=0.268  Sum_probs=85.2

Q ss_pred             EEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEecceeeEecCCceee-ecCCcEEEEEEecCCCC-CceEEEeeCCEE
Q psy14542         60 VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVV-DVGHRIELHCRVSPKRL-SSAKAWLKDGLV  137 (371)
Q Consensus        60 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~-~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~  137 (371)
                      +|.|.+++.+|+|.|.|.+.+..+.....+.|.|. .+|.+...+.... ..|+.+.|.|.+.+..+ .+++.|++++..
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~-~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~   80 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVS-EPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG   80 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEe-cCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence            79999999999999999999887888888999998 5666655444332 47899999999998755 368999998864


Q ss_pred             eeeC--CeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        138 LRRN--SDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       138 ~~~~--~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      ....  ..............+|         .+.+.  +.|.+..-...+ ...|+|.+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~dg---------t~~~~--s~L~v~~~~~~~-g~~ytC~V~H~  130 (139)
T cd05771          81 DSPPPVSLSNVSFSSHRQHQDG---------TYSLS--SHLTLEPGTEDA-GATYTCRVSHV  130 (139)
T ss_pred             CccceeccCCeEecceEeCCCC---------CEEEE--EEEEecCCccCC-CCEEEEEEEcC
Confidence            2210  0000111112222333         33332  567776555555 77999999876

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.53  E-value=1.2e-13  Score=95.50  Aligned_cols=79  Identities=29%  Similarity=0.566  Sum_probs=63.3

Q ss_pred             eeeeeeecCCeEEEEEEeecCCCCceEEEeC--Cccccc-----CCceEEe----cceEEEeccCCCCCeEEEEEEEcCC
Q psy14542        229 HRILNVKKDESVILPCSAQGNPLPTIKWYKQ--DSPVEE-----SDRIQRI----GSSLSISHVEESDSGVWNCVANNSE  297 (371)
Q Consensus       229 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~~~-----~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~  297 (371)
                      .+.. +.+|+.+.|.|.+.|.|.|.+.|+++  +..+..     ..++...    ...|.|.++..+|+|.|+|.|.|..
T Consensus         9 ~~~~-~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   87 (98)
T cd05870           9 KNET-TVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRI   87 (98)
T ss_pred             ccEE-EcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccC
Confidence            3444 88999999999999999999999994  333321     2344422    3579999999999999999999999


Q ss_pred             CCceeEEEEEE
Q psy14542        298 GQDKMQLFIQY  308 (371)
Q Consensus       298 g~~~~~~~l~v  308 (371)
                      |....++.|.|
T Consensus        88 G~~~~~~~l~~   98 (98)
T cd05870          88 GGHQKSMYLDI   98 (98)
T ss_pred             CcceeEEEEeC
Confidence            99988888764

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.53  E-value=1.1e-13  Score=96.68  Aligned_cols=86  Identities=33%  Similarity=0.533  Sum_probs=64.5

Q ss_pred             cceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccC----C--ceEEecceEEEe-----ccCCCCCeEEE
Q psy14542        222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEES----D--RIQRIGSSLSIS-----HVEESDSGVWN  290 (371)
Q Consensus       222 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~----~--~~~~~~~~l~i~-----~~~~~d~G~Y~  290 (371)
                      |.+...+.... +.+|+.+.|.|.+.|.|.|.+.|+++|..+...    .  +....++.+.+.     .+..+|+|.|+
T Consensus         2 P~i~~~p~~~~-v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~   80 (100)
T cd07693           2 PRIVEHPSDLI-VSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV   80 (100)
T ss_pred             CeEEecCceeE-EcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence            55555566666 899999999999999999999999999887651    1  112233333222     23689999999


Q ss_pred             EEEEcCCCC-ceeEEEEEE
Q psy14542        291 CVANNSEGQ-DKMQLFIQY  308 (371)
Q Consensus       291 C~a~n~~g~-~~~~~~l~v  308 (371)
                      |.|.|..|. .+..+.|.|
T Consensus        81 C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          81 CVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEccccceecceEEEEe
Confidence            999999999 677777765

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.53  E-value=6.8e-14  Score=91.82  Aligned_cols=70  Identities=24%  Similarity=0.576  Sum_probs=56.7

Q ss_pred             EEEEEEeecCCCCceEEEeCCcccccCC-ceE--EecceEEEeccCCCCCeEEEEEEEcCCCCce--eEEEEEEe
Q psy14542        240 VILPCSAQGNPLPTIKWYKQDSPVEESD-RIQ--RIGSSLSISHVEESDSGVWNCVANNSEGQDK--MQLFIQYA  309 (371)
Q Consensus       240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~v~  309 (371)
                      ++|.|.+.|.|.|.+.|+|+|..+.... ++.  ..++.|.|.++..+|+|.|.|.|.|..|...  ..+.|.|.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            4799999999999999999999886553 222  2345899999999999999999999999864  45666553

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.53  E-value=5.8e-14  Score=89.59  Aligned_cols=68  Identities=26%  Similarity=0.365  Sum_probs=56.4

Q ss_pred             EEEEEEeecCCCCceEEEeCCcccccC-CceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEE
Q psy14542        240 VILPCSAQGNPLPTIKWYKQDSPVEES-DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ  307 (371)
Q Consensus       240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  307 (371)
                      +.|.|.+.|.|.|++.|++++.++... .++...+.+|.|.++..+|+|.|+|.|.|..........+.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~   69 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT   69 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence            368999999999999999999988765 45555666899999999999999999999877665555443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.53  E-value=1.2e-13  Score=94.06  Aligned_cols=75  Identities=27%  Similarity=0.516  Sum_probs=65.2

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE--ec---ceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR--IG---SSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~--~~---~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      +.+|+.+.|.|.+.|.|.|.+.|++++..+....++..  ..   .+|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus        13 v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~~   92 (92)
T cd05891          13 IMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVSV   92 (92)
T ss_pred             EcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEEC
Confidence            89999999999999999999999999988776655432  11   37999999999999999999999999998888765

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.53  E-value=1e-13  Score=95.79  Aligned_cols=78  Identities=29%  Similarity=0.587  Sum_probs=64.2

Q ss_pred             eeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccC-----CceEE----ecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEES-----DRIQR----IGSSLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       230 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-----~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      +.. +.+|+.+.|.|.+.|.|.|.+.|++++..+...     .++..    ..+.|.|.++..+|+|.|+|.|.|..|..
T Consensus        10 ~~~-~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   88 (96)
T cd05732          10 NQT-AVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGD   88 (96)
T ss_pred             cee-EecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCc
Confidence            344 889999999999999999999999998665532     22222    22479999999999999999999999999


Q ss_pred             eeEEEEEE
Q psy14542        301 KMQLFIQY  308 (371)
Q Consensus       301 ~~~~~l~v  308 (371)
                      ..++.|.|
T Consensus        89 ~~s~~l~v   96 (96)
T cd05732          89 QQSMYLEV   96 (96)
T ss_pred             EEEEEEeC
Confidence            88888764

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.53  E-value=1.3e-13  Score=94.20  Aligned_cols=80  Identities=16%  Similarity=0.375  Sum_probs=68.1

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEc
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSA   80 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~   80 (371)
                      +|.+...|.. ..+.+|+.+.|.| ...+.|.+.+.|+|+|..+...         ..++|.|.+++.+|+|.|+|.+.|
T Consensus         3 ~~~~~~~p~~-~~~~~G~~~~L~C-~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   80 (92)
T cd05747           3 PATILTKPRS-LTVSEGESARFSC-DVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVEN   80 (92)
T ss_pred             CCcccccCcc-EEEeCCCcEEEEE-EEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEc
Confidence            5667777877 9999999999999 5567888999999998876533         346899999999999999999999


Q ss_pred             CCCCeEEEEEE
Q psy14542         81 DDDSAQMSAQV   91 (371)
Q Consensus        81 ~~~~~~~~~~l   91 (371)
                      ..|.....+.|
T Consensus        81 ~~G~~~~~~~l   91 (92)
T cd05747          81 SEGKQEAQFTL   91 (92)
T ss_pred             CCCCEeEEEEe
Confidence            99988777765

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.53  E-value=1.2e-13  Score=93.95  Aligned_cols=77  Identities=29%  Similarity=0.490  Sum_probs=64.6

Q ss_pred             CCeEEEEEEeecCCCCceEEEeCCccc--------ccCCceEE-ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEE
Q psy14542        237 DESVILPCSAQGNPLPTIKWYKQDSPV--------EESDRIQR-IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ  307 (371)
Q Consensus       237 g~~~~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  307 (371)
                      |+.+.|.|.+.|.|.|.+.|++++..+        ....++.. .++.|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE   80 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence            678999999999999999999988643        12344443 356899999999999999999999999999999999


Q ss_pred             EecCcc
Q psy14542        308 YAHGKY  313 (371)
Q Consensus       308 v~~~p~  313 (371)
                      |.....
T Consensus        81 V~~~~~   86 (90)
T cd05726          81 VTDVIA   86 (90)
T ss_pred             Eeeccc
Confidence            986544

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.52  E-value=2.1e-13  Score=92.09  Aligned_cols=79  Identities=24%  Similarity=0.544  Sum_probs=63.4

Q ss_pred             eeeeeeeecCCeEEEEEEeecCCCCceEEEeC-CcccccCCceEEe-cc---eEEEeccCCCCCeEEEEEEEcCCCCc-e
Q psy14542        228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQ-DSPVEESDRIQRI-GS---SLSISHVEESDSGVWNCVANNSEGQD-K  301 (371)
Q Consensus       228 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~-~~---~l~i~~~~~~d~G~Y~C~a~n~~g~~-~  301 (371)
                      +.+.. +..|+.+.|.|.+.|.|. .+.|+++ +..+..+.++... ++   .|.|..+..+|+|.|+|.|.|..|.. .
T Consensus         7 ~~~~~-v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~   84 (92)
T cd05866           7 LSKVE-LSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQE   84 (92)
T ss_pred             ecceE-EcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEE
Confidence            34444 889999999999999998 9999984 6666666666532 23   79999999999999999999999985 6


Q ss_pred             eEEEEEE
Q psy14542        302 MQLFIQY  308 (371)
Q Consensus       302 ~~~~l~v  308 (371)
                      .++.|.+
T Consensus        85 ~~i~l~~   91 (92)
T cd05866          85 ATVVLEI   91 (92)
T ss_pred             EEEEEEE
Confidence            6666654

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.52  E-value=6.2e-14  Score=91.43  Aligned_cols=68  Identities=26%  Similarity=0.437  Sum_probs=59.4

Q ss_pred             ccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542         25 VGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL   93 (371)
Q Consensus        25 ~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   93 (371)
                      +|+.+.|.| ...+.|.+.+.|+|++..+...      ..++|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 eG~~v~l~C-~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLC-EAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEe-ECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            689999999 5678899999999999876543      4568999999999999999999999999888888765

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.52  E-value=1e-13  Score=92.91  Aligned_cols=75  Identities=28%  Similarity=0.508  Sum_probs=63.6

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE--ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR--IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      ...|+.+.|.|.+.|.|.|.+.|++++..+........  ...+|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         6 ~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v   82 (82)
T cd05856           6 RPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV   82 (82)
T ss_pred             ccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence            67799999999999999999999999988765443332  2357999999999999999999999999888887764

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.52  E-value=9.6e-14  Score=91.50  Aligned_cols=66  Identities=30%  Similarity=0.585  Sum_probs=56.2

Q ss_pred             EEEEeecCCCCceEEEeCCcccccCCceEE-----------ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEE
Q psy14542        242 LPCSAQGNPLPTIKWYKQDSPVEESDRIQR-----------IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ  307 (371)
Q Consensus       242 l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  307 (371)
                      |.|.+.|.|.|.++|+++|..+..+.+...           ..+.|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            689999999999999999998877654321           134699999999999999999999999998887764

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.52  E-value=1.7e-13  Score=93.59  Aligned_cols=66  Identities=36%  Similarity=0.697  Sum_probs=56.2

Q ss_pred             cCCeEEEEEEeecCCCCceEEEeCCcccccCC--ceEEecceEEEeccC-CCCCeEEEEEEEcCCCCce
Q psy14542        236 KDESVILPCSAQGNPLPTIKWYKQDSPVEESD--RIQRIGSSLSISHVE-ESDSGVWNCVANNSEGQDK  301 (371)
Q Consensus       236 ~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~  301 (371)
                      .|+.+.|.|.+.|.|.|.++|+++|..+....  ++...++.|.|.++. .+|+|.|+|.|.|..|...
T Consensus        18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~   86 (94)
T cd05848          18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSIL   86 (94)
T ss_pred             CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEE
Confidence            47899999999999999999999999886443  444567889998875 6999999999999999863

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.52  E-value=1.7e-13  Score=93.54  Aligned_cols=81  Identities=30%  Similarity=0.519  Sum_probs=70.4

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSAD   81 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~   81 (371)
                      |.|...|.. +.+.+|+++.|.|.+. +.|.+.+.|++++..+...         ...+|.|.+++.+|+|.|+|.+.+.
T Consensus         1 P~~~~~~~~-~~v~~G~~~~l~c~~~-~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~   78 (90)
T PF07679_consen    1 PVFTKKPKD-VTVKEGESVTLECEVS-GNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNS   78 (90)
T ss_dssp             EEEEEESSE-EEEETTSEEEEEEEEE-ESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEET
T ss_pred             CEEEEecCC-EEEeCCCEEEEEEEEE-eCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEEC
Confidence            466777766 9999999999999654 5588899999999998865         6789999999999999999999999


Q ss_pred             CCCeEEEEEEEE
Q psy14542         82 DDSAQMSAQVIL   93 (371)
Q Consensus        82 ~~~~~~~~~l~v   93 (371)
                      .|.....+.|.|
T Consensus        79 ~g~~~~~~~l~V   90 (90)
T PF07679_consen   79 SGEATASVNLTV   90 (90)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEC
Confidence            888888888765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.51  E-value=2.7e-13  Score=92.70  Aligned_cols=70  Identities=24%  Similarity=0.470  Sum_probs=57.4

Q ss_pred             CCeEEEEEEeecCCCCceEEEeCCcccccC--CceEEecceEEEeccC-CCCCeEEEEEEEcCCCCce-eEEEE
Q psy14542        237 DESVILPCSAQGNPLPTIKWYKQDSPVEES--DRIQRIGSSLSISHVE-ESDSGVWNCVANNSEGQDK-MQLFI  306 (371)
Q Consensus       237 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~-~~~~l  306 (371)
                      |+.+.|.|.+.|.|.|+++|+++|..+...  .++...++.|.|.++. .+|.|.|+|.|+|..|... ..+.|
T Consensus        19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   92 (94)
T cd05850          19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL   92 (94)
T ss_pred             CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence            468999999999999999999999988633  4555667889998755 6999999999999999864 34444

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.51  E-value=7.8e-14  Score=91.92  Aligned_cols=72  Identities=32%  Similarity=0.404  Sum_probs=60.6

Q ss_pred             CCeEEEEEEeecCCCCceEEEeCCcccccCCceEE----ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        237 DESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR----IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       237 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      |+++.|.|.+.|.|.|.+.|++++..+....++..    ..+.|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~   76 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL   76 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence            67899999999999999999999988776665542    1257999999999999999999999998876665544

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.51  E-value=2.3e-13  Score=93.63  Aligned_cols=75  Identities=21%  Similarity=0.350  Sum_probs=64.5

Q ss_pred             cEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------C-------eeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542         20 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------S-------DEVLVLDRVQREDAGMYQCHVSADDDSA   85 (371)
Q Consensus        20 ~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~-------~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   85 (371)
                      .+.+.+|+++.|.|.+....|.+.+.|+|||..+...       .       ...|.|.+++.+|+|.|+|.|.|..|..
T Consensus        12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~   91 (101)
T cd04975          12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK   91 (101)
T ss_pred             eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence            3789999999999965443889999999999888643       1       3679999999999999999999999998


Q ss_pred             EEEEEEEEe
Q psy14542         86 QMSAQVILG   94 (371)
Q Consensus        86 ~~~~~l~v~   94 (371)
                      ..++.|.|.
T Consensus        92 ~~t~~L~V~  100 (101)
T cd04975          92 SLTFELYVN  100 (101)
T ss_pred             EEEEEEEEE
Confidence            888888875

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.51  E-value=2.3e-13  Score=91.17  Aligned_cols=72  Identities=19%  Similarity=0.347  Sum_probs=63.1

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQ   90 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   90 (371)
                      +.+.+|+.+.|.|. ..+.|.+.+.|+|++..+...          ..+.|.|.++..+|+|.|+|.+.|..|....++.
T Consensus         5 ~~v~~G~~v~l~c~-~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~   83 (86)
T cd05894           5 IVVVAGNKLRLDVP-ISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF   83 (86)
T ss_pred             EEEEcCCEEEEEee-EeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence            67899999999995 568899999999999887542          3468999999999999999999999999988888


Q ss_pred             EEE
Q psy14542         91 VIL   93 (371)
Q Consensus        91 l~v   93 (371)
                      |.|
T Consensus        84 l~V   86 (86)
T cd05894          84 VKV   86 (86)
T ss_pred             EEC
Confidence            765

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.51  E-value=2e-13  Score=93.15  Aligned_cols=75  Identities=23%  Similarity=0.355  Sum_probs=63.2

Q ss_pred             CCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEEEEEEcCCCCeE
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQ   86 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   86 (371)
                      |+. +.+.+|+++.|.|. ..+.|.+.+.|+|++..+...          ...+|.|.+++.+|+|.|+|.+.|..|...
T Consensus         8 p~~-v~v~~G~~v~L~C~-v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   85 (92)
T cd05737           8 PDV-VTIMEGKTLNLTCT-VFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGET   85 (92)
T ss_pred             Cce-EEEeCCCcEEEEEE-EEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcce
Confidence            444 78999999999995 567789999999998876532          235799999999999999999999999888


Q ss_pred             EEEEEEE
Q psy14542         87 MSAQVIL   93 (371)
Q Consensus        87 ~~~~l~v   93 (371)
                      ..+.|.|
T Consensus        86 ~~~~v~v   92 (92)
T cd05737          86 VDVTVSV   92 (92)
T ss_pred             EEEEEeC
Confidence            8877764

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.51  E-value=2.5e-13  Score=92.00  Aligned_cols=81  Identities=20%  Similarity=0.307  Sum_probs=67.3

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHVSADDDSA   85 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   85 (371)
                      +.+...|.. ..+.+|+.+.|.|. ..+.|.+.+.|++++..+...     ....|.|.+++.+|+|.|+|.+.|..|..
T Consensus         2 ~~~~~~p~~-~~~~~g~~v~l~C~-~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~   79 (88)
T cd04968           2 SIIVVFPKD-TYALKGQNVTLECF-ALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKD   79 (88)
T ss_pred             CcEEECCCc-eEEeCCCcEEEEEE-eeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcE
Confidence            345556666 88999999999994 567788999999977655432     45789999999999999999999999998


Q ss_pred             EEEEEEEE
Q psy14542         86 QMSAQVIL   93 (371)
Q Consensus        86 ~~~~~l~v   93 (371)
                      .....|.|
T Consensus        80 ~~~~~l~V   87 (88)
T cd04968          80 THQGRIYV   87 (88)
T ss_pred             EEEEEEEE
Confidence            88888876

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.50  E-value=1.8e-13  Score=89.38  Aligned_cols=72  Identities=25%  Similarity=0.530  Sum_probs=60.0

Q ss_pred             CCeEEEEEEeecCCCCceEEEe-CCcccccCCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        237 DESVILPCSAQGNPLPTIKWYK-QDSPVEESDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       237 g~~~~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+....+.. ..+++|.|..+..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            6789999999999999999997 555555444433 35678999999999999999999999999888877764

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.50  E-value=1.5e-13  Score=88.73  Aligned_cols=67  Identities=21%  Similarity=0.421  Sum_probs=57.9

Q ss_pred             cCcEEEEEEecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542         26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL   93 (371)
Q Consensus        26 G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   93 (371)
                      |+.+.|.|. ..+.|.+.+.|+|++..+...      .+++|.|.+++.+|+|.|+|.|.|..|....+..|.|
T Consensus         1 G~~~~l~C~-~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECK-PKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEe-cceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            788999995 457888999999998876543      5578999999999999999999999999988888764

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.50  E-value=2.7e-13  Score=92.18  Aligned_cols=78  Identities=19%  Similarity=0.299  Sum_probs=64.9

Q ss_pred             EeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542         15 MSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSA   85 (371)
Q Consensus        15 ~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   85 (371)
                      +.|.....+.+|+.+.|.|. ..+.|.+.+.|++++..+...         ....|.|.+++.+|.|.|+|.|.|..|..
T Consensus         4 v~~p~~~~v~~G~~v~l~C~-~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~   82 (90)
T cd04972           4 VDGPNATVVYEGGTATIRCT-AEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQA   82 (90)
T ss_pred             ccCCcCEEEcCCCcEEEEEE-EEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCce
Confidence            44444477999999999995 457899999999999876432         34589999999999999999999999998


Q ss_pred             EEEEEEEE
Q psy14542         86 QMSAQVIL   93 (371)
Q Consensus        86 ~~~~~l~v   93 (371)
                      ...+.|.|
T Consensus        83 ~~~~~L~v   90 (90)
T cd04972          83 NVSVQVTV   90 (90)
T ss_pred             eEEEEEeC
Confidence            88887764

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.50  E-value=2.5e-13  Score=92.35  Aligned_cols=70  Identities=27%  Similarity=0.585  Sum_probs=57.8

Q ss_pred             CCeEEEEEEeecCCCCceEEEeCCccccc-CCceEEecceEEEeccC-CCCCeEEEEEEEcCCCCce-eEEEE
Q psy14542        237 DESVILPCSAQGNPLPTIKWYKQDSPVEE-SDRIQRIGSSLSISHVE-ESDSGVWNCVANNSEGQDK-MQLFI  306 (371)
Q Consensus       237 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~-~~~~l  306 (371)
                      |..+.|.|.+.|.|.|+++|++++..+.. ..++...++.|.|.++. .+|+|.|+|.|.|..|... +.+.|
T Consensus        19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   91 (93)
T cd05849          19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL   91 (93)
T ss_pred             CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence            45799999999999999999999988753 45566677899999875 6899999999999999863 34444

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.50  E-value=9.7e-14  Score=90.04  Aligned_cols=69  Identities=29%  Similarity=0.604  Sum_probs=58.2

Q ss_pred             EEEEEEeecCCCCceEEEeCCcccccCCc-eEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        240 VILPCSAQGNPLPTIKWYKQDSPVEESDR-IQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      +.|.|.+.|.|.|.+.|++++..+..... ....++.|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            46899999999999999999887654322 2234568999999999999999999999999998888876

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.50  E-value=1.4e-13  Score=89.58  Aligned_cols=69  Identities=38%  Similarity=0.684  Sum_probs=57.7

Q ss_pred             EEEEEEeecCCCCceEEEeCCcccc--cCCceEE-ecceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEE
Q psy14542        240 VILPCSAQGNPLPTIKWYKQDSPVE--ESDRIQR-IGSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQY  308 (371)
Q Consensus       240 ~~l~C~~~~~p~~~v~W~~~~~~~~--~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v  308 (371)
                      ++|.|.+.|.|.|.+.|++++..+.  ...++.. .++.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            4689999999999999999998776  3445543 45689999999999999999999999984 67777766

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.50  E-value=1.4e-13  Score=86.49  Aligned_cols=65  Identities=18%  Similarity=0.274  Sum_probs=55.5

Q ss_pred             EEEEEEecCCCCCCeeEEEeCCEEEeeC-CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542         29 IELHCRVSPKRLSSAKAWLKDGLVLRRN-SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILG   94 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   94 (371)
                      +.|.|. ..+.|.+.+.|+|||..+... ....|.|.++..+|+|.|+|.+.|..|....++.+.+.
T Consensus         1 ~~l~c~-v~g~P~P~v~W~kdg~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVK-VAAYPPPEFQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEE-EEEeCCCEEEEEECCEECcccCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            478994 568899999999999988643 56689999999999999999999999988777777654

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.49  E-value=2e-13  Score=92.85  Aligned_cols=75  Identities=25%  Similarity=0.407  Sum_probs=63.9

Q ss_pred             eecCCeEEEEEEeec-----CCCCceEEEeCCccccc----CCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542        234 VKKDESVILPCSAQG-----NPLPTIKWYKQDSPVEE----SDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL  304 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~-----~p~~~v~W~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  304 (371)
                      +.+|+.+.|.|.+.+     .|.+++.|++++..+..    ..++...++.|.|.++..+|+|.|+|.+.|..|.....+
T Consensus        11 v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~   90 (94)
T cd05756          11 VLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMKVSI   90 (94)
T ss_pred             EecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEEEEE
Confidence            788999999999998     68899999999876432    244445567899999999999999999999999998888


Q ss_pred             EEEE
Q psy14542        305 FIQY  308 (371)
Q Consensus       305 ~l~v  308 (371)
                      .|.|
T Consensus        91 ~L~v   94 (94)
T cd05756          91 SLTV   94 (94)
T ss_pred             EEEC
Confidence            8765

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.49  E-value=3.1e-13  Score=91.43  Aligned_cols=73  Identities=25%  Similarity=0.449  Sum_probs=62.1

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceE--EecceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ--RIGSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQY  308 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v  308 (371)
                      +.+|+++.|.|.+.|. .|.+.|++++..+... ++.  ..+++|.|.++..+|+|.|.|.|.|..|.. +..+.|.|
T Consensus        15 v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V   90 (91)
T cd05740          15 PEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV   90 (91)
T ss_pred             cccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence            8899999999999999 9999999999887644 343  234689999999999999999999999985 55677766

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.49  E-value=2.5e-13  Score=88.94  Aligned_cols=69  Identities=28%  Similarity=0.502  Sum_probs=56.8

Q ss_pred             EEEEEEeecCCCCceEEEeCCcccc---cCCceE--EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        240 VILPCSAQGNPLPTIKWYKQDSPVE---ESDRIQ--RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       240 ~~l~C~~~~~p~~~v~W~~~~~~~~---~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      +.|.|.+.|.|.|.++|++++....   ...++.  ..++.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            3689999999999999999986422   222333  23468999999999999999999999999998888877

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.48  E-value=3.7e-13  Score=87.92  Aligned_cols=68  Identities=16%  Similarity=0.437  Sum_probs=55.5

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSAD   81 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~   81 (371)
                      |.+.+.|+. ..+.+|++++|.|..........+.|+||+..+.. ...+|.|.++ .+|+|.|+|.+.+.
T Consensus         1 ~vv~~~P~~-~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           1 AVVSLDPPW-TTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET-TTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             CeEEeCCCC-eEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec-cCCeEEEeec-ccCCEEeEEECCCC
Confidence            357778888 89999999999996543322356999999998844 5678999999 99999999999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.48  E-value=5.6e-13  Score=91.93  Aligned_cols=82  Identities=18%  Similarity=0.274  Sum_probs=66.2

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeEEE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGMYQ   75 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~Y~   75 (371)
                      +|+|...+.. ..+..|+.++|.|. ..+.|.+.+.|++++..+...              ..+.|.|.+++.+|+|.|+
T Consensus         2 ~p~i~~~~~~-~~~~~g~~v~l~C~-~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~   79 (97)
T cd05869           2 KPKITYVENQ-TAMELEEQITLTCE-ASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYL   79 (97)
T ss_pred             CceEEEccCc-eEEEcCCCEEEEEE-eeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEE
Confidence            4667766766 56667899999995 557788999999987654321              2358999999999999999


Q ss_pred             EEEEcCCCCeEEEEEEEE
Q psy14542         76 CHVSADDDSAQMSAQVIL   93 (371)
Q Consensus        76 C~~~~~~~~~~~~~~l~v   93 (371)
                      |.+.|..|.....+.|.|
T Consensus        80 C~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          80 CTASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EEEecCCCCeeEEEEEEC
Confidence            999999999988888765

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.48  E-value=2.2e-13  Score=91.39  Aligned_cols=77  Identities=25%  Similarity=0.454  Sum_probs=65.6

Q ss_pred             EeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEE
Q psy14542         15 MSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSA   89 (371)
Q Consensus        15 ~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   89 (371)
                      ..|.. ..+.+|+.+.|.|. ..+.|.+.+.|+|++..+...     ....|.|.+++.+|+|.|+|.+.|..|.....+
T Consensus         4 ~~p~~-~~~~~G~~~~l~C~-~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   81 (85)
T cd05728           4 KVISD-TEADIGSSLRWECK-ASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASA   81 (85)
T ss_pred             ccCCc-cEEcCCCcEEEEEE-eeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEE
Confidence            34555 78999999999994 567889999999999877543     456899999999999999999999999888888


Q ss_pred             EEEE
Q psy14542         90 QVIL   93 (371)
Q Consensus        90 ~l~v   93 (371)
                      .|.|
T Consensus        82 ~l~V   85 (85)
T cd05728          82 ELAV   85 (85)
T ss_pred             EEEC
Confidence            7764

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.47  E-value=7.2e-13  Score=91.23  Aligned_cols=83  Identities=16%  Similarity=0.311  Sum_probs=67.2

Q ss_pred             ceEEEeCCC-cEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542         11 LSIEMSPSG-QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHVSAD   81 (371)
Q Consensus        11 ~~~~~~p~~-~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~   81 (371)
                      |.|...+.. ...+..|+.+.|.|. ..+.|.+.+.|+++|..+...        ....|.|.+++.+|+|.|+|.+.|.
T Consensus         2 p~i~~~~~~~~~~~~~G~~v~L~C~-~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   80 (95)
T cd05730           2 PTIRARQSEVNATANLGQSVTLACD-ADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENK   80 (95)
T ss_pred             CccccCCcccceEEeCCCCEEEEEe-ccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcC
Confidence            444444432 257899999999995 567889999999998876532        3457999999999999999999999


Q ss_pred             CCCeEEEEEEEEe
Q psy14542         82 DDSAQMSAQVILG   94 (371)
Q Consensus        82 ~~~~~~~~~l~v~   94 (371)
                      .|.....+.|.|.
T Consensus        81 ~G~~~~~~~L~V~   93 (95)
T cd05730          81 AGEQEAEIHLKVF   93 (95)
T ss_pred             CCeEEEEEEEEEE
Confidence            9999888888886

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.46  E-value=3.8e-13  Score=91.23  Aligned_cols=73  Identities=22%  Similarity=0.401  Sum_probs=57.3

Q ss_pred             CCeEEEEEEeecCCCCceEEEeCC----cccccCC-ce-E-----------EecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        237 DESVILPCSAQGNPLPTIKWYKQD----SPVEESD-RI-Q-----------RIGSSLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       237 g~~~~l~C~~~~~p~~~v~W~~~~----~~~~~~~-~~-~-----------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      |+.+.|.|.+.|.|.|+|+|+|++    ..+.... .. .           .....|.|.++..+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            678999999999999999999963    2221111 10 0           12347999999999999999999999999


Q ss_pred             ceeEEEEEEe
Q psy14542        300 DKMQLFIQYA  309 (371)
Q Consensus       300 ~~~~~~l~v~  309 (371)
                      ...++.|.|.
T Consensus        81 ~~~sa~L~V~   90 (90)
T cd04974          81 SHHSAWLTVL   90 (90)
T ss_pred             ccCCEEEEeC
Confidence            9999988873

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.46  E-value=4.4e-13  Score=87.89  Aligned_cols=67  Identities=24%  Similarity=0.438  Sum_probs=58.1

Q ss_pred             cCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542         26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL   93 (371)
Q Consensus        26 G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   93 (371)
                      |+++.|.|. ..+.|.+.+.|+++|..+...        ..++|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 G~~v~l~C~-~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQ-VEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEE-eeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            789999995 567788999999999877542        3568999999999999999999999999888888876

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.46  E-value=6.4e-13  Score=91.39  Aligned_cols=75  Identities=31%  Similarity=0.500  Sum_probs=60.7

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccCCc--eE-EecceEEEecc-----CCCCCeEEEEEEEcC-CCCc-eeE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDR--IQ-RIGSSLSISHV-----EESDSGVWNCVANNS-EGQD-KMQ  303 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~--~~-~~~~~l~i~~~-----~~~d~G~Y~C~a~n~-~g~~-~~~  303 (371)
                      +..|+++.|.|.+.|.|.|.+.|+++|..+.....  .. ..++.|.|..+     ..+|.|.|+|.|.|. .|.. +..
T Consensus        11 ~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~   90 (95)
T cd05722          11 AVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRT   90 (95)
T ss_pred             EcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEee
Confidence            77899999999999999999999999998875432  22 34566777766     588999999999999 9986 556


Q ss_pred             EEEEE
Q psy14542        304 LFIQY  308 (371)
Q Consensus       304 ~~l~v  308 (371)
                      +.|.|
T Consensus        91 ~~l~v   95 (95)
T cd05722          91 ARLTV   95 (95)
T ss_pred             eEEeC
Confidence            66654

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.46  E-value=1e-12  Score=88.75  Aligned_cols=79  Identities=19%  Similarity=0.371  Sum_probs=62.4

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe-CCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSAD   81 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~-~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~   81 (371)
                      .+.+.|.. ..+.+|+++.|.|.+ .+.|. .+.|++ ++..+...         ....|.|.+++.+|+|.|+|.|.|.
T Consensus         2 ~~~~~~~~-~~v~~G~~v~l~C~~-~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~   78 (92)
T cd05866           2 QVSISLSK-VELSVGESKFFTCTA-IGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA   78 (92)
T ss_pred             eEEEEecc-eEEcCCCeEEEEEEE-EEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcC
Confidence            45667777 889999999999954 56776 899998 46555432         2348999999999999999999999


Q ss_pred             CCCe-EEEEEEEE
Q psy14542         82 DDSA-QMSAQVIL   93 (371)
Q Consensus        82 ~~~~-~~~~~l~v   93 (371)
                      .|.. .+++.|.+
T Consensus        79 ~G~~~~~~i~l~~   91 (92)
T cd05866          79 KGQTQEATVVLEI   91 (92)
T ss_pred             CCcEEEEEEEEEE
Confidence            8875 56676665

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.46  E-value=7.3e-13  Score=89.50  Aligned_cols=75  Identities=31%  Similarity=0.600  Sum_probs=61.8

Q ss_pred             eecCCeEEEEEEe-ecCCCCceEEEeCCcccccC-CceE-EecceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEE
Q psy14542        234 VKKDESVILPCSA-QGNPLPTIKWYKQDSPVEES-DRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQY  308 (371)
Q Consensus       234 ~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~-~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v  308 (371)
                      +..|+++.|.|.+ .|.|.|.+.|++++..+... .++. ..++.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|
T Consensus         8 ~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~V   86 (86)
T cd05724           8 VAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARLSV   86 (86)
T ss_pred             EeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEEC
Confidence            8899999999998 68999999999999877663 3333 335789999999999999999999999985 45555543

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.46  E-value=4.8e-13  Score=87.90  Aligned_cols=68  Identities=25%  Similarity=0.528  Sum_probs=55.4

Q ss_pred             eeeeeeecCCeEEEEEEeecCCCC-ceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCce
Q psy14542        229 HRILNVKKDESVILPCSAQGNPLP-TIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDK  301 (371)
Q Consensus       229 ~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  301 (371)
                      .+.. +..|+++.|.|.+.|.|.| +|.|+++|.++..  +.....+.|.|..+  .|.|.|.|.|.|..|...
T Consensus         6 ~~~~-v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~--~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~   74 (81)
T cd05749           6 EDLS-VTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD--PPAPSPSVLNVPGL--NETSKFSCEAHNAKGVTT   74 (81)
T ss_pred             CceE-EcCCCCEEEEEEeeeecCCeEEEEEECCEECCC--CCCCCCCEEEEccc--cCCeEEEEEEEeccCcEE
Confidence            3344 8999999999999999999 7999999998764  12234567888877  478999999999999754

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.44  E-value=6.9e-13  Score=87.51  Aligned_cols=71  Identities=25%  Similarity=0.470  Sum_probs=58.0

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL   93 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   93 (371)
                      ..+.+|+.+.|.|.+.. . .+.+.|+|+|..+...     ...+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         4 ~~~~~G~~v~l~C~~~~-~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V   79 (79)
T cd04973           4 YSAHPGDLLQLRCRLRD-D-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV   79 (79)
T ss_pred             EEecCCCCEEEEEEecC-C-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence            77899999999997654 3 4579999999877643     3457999999999999999999998887776666654

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.44  E-value=1.1e-12  Score=88.72  Aligned_cols=76  Identities=25%  Similarity=0.443  Sum_probs=61.9

Q ss_pred             eCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCcCCCeEEEEEEEcCCCCe-EE
Q psy14542         16 SPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAGMYQCHVSADDDSA-QM   87 (371)
Q Consensus        16 ~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~   87 (371)
                      .|.. ..+.+|+++.|.|.+..+.|.+.+.|++++..+...       ..++|.|.+++.+|+|.|+|.+.|..|.. ..
T Consensus         2 ~p~~-~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~   80 (86)
T cd05724           2 EPSD-TQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESA   80 (86)
T ss_pred             CCcc-EEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeee
Confidence            4555 789999999999965567889999999998876652       45689999999999999999999988875 34


Q ss_pred             EEEEE
Q psy14542         88 SAQVI   92 (371)
Q Consensus        88 ~~~l~   92 (371)
                      .+.|.
T Consensus        81 ~~~l~   85 (86)
T cd05724          81 AARLS   85 (86)
T ss_pred             eEEEE
Confidence            44443

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.44  E-value=1.8e-12  Score=89.63  Aligned_cols=81  Identities=16%  Similarity=0.242  Sum_probs=63.6

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--CEEEeeC--------------CeeEEEEccCCcCCCeE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--GLVLRRN--------------SDEVLVLDRVQREDAGM   73 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~~~~~~~--------------~~~~l~i~~~~~~d~G~   73 (371)
                      +|++.. +.. ..+.+|++++|.| ...+.|.+.+.|+|+  +..+...              ...+|.|.+++.+|+|.
T Consensus         2 ~p~i~~-~~~-~~~~~G~~v~l~C-~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~   78 (98)
T cd05870           2 QPHIIQ-LKN-ETTVENGAATLSC-KAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGR   78 (98)
T ss_pred             CCEEEe-ecc-EEEcCCCcEEEEE-ecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEE
Confidence            355543 555 7899999999999 456788999999993  3333210              34689999999999999


Q ss_pred             EEEEEEcCCCCeEEEEEEEE
Q psy14542         74 YQCHVSADDDSAQMSAQVIL   93 (371)
Q Consensus        74 Y~C~~~~~~~~~~~~~~l~v   93 (371)
                      |+|.|.|..|.....+.|.|
T Consensus        79 Y~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          79 YDCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEEEeccCCcceeEEEEeC
Confidence            99999999998888887764

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.44  E-value=7.5e-13  Score=86.93  Aligned_cols=71  Identities=31%  Similarity=0.562  Sum_probs=59.8

Q ss_pred             EEEEEEeecCCCCceEEEeCCcccccCC--ceE--EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEec
Q psy14542        240 VILPCSAQGNPLPTIKWYKQDSPVEESD--RIQ--RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAH  310 (371)
Q Consensus       240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  310 (371)
                      +.|.|.+.|.|.|.+.|++++..+....  ++.  ..+..|.|.++..+|.|.|+|.|.|..|....++.|.|.+
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   75 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED   75 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence            3689999999999999999998876543  233  2235799999999999999999999999999999998863

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.44  E-value=1.1e-12  Score=88.32  Aligned_cols=72  Identities=19%  Similarity=0.424  Sum_probs=61.0

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQ   90 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   90 (371)
                      ..+.+|+.+.|.|. ..+.|.+.+.|+|+|..+...          ...+|.|.+++.+|+|.|+|.+.|..|.....+.
T Consensus         4 ~~v~~G~~~~L~C~-~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   82 (85)
T cd05857           4 HAVPAANTVKFRCP-AAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH   82 (85)
T ss_pred             EEcCCCCEEEEEEE-cCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEE
Confidence            45889999999995 566788999999999876543          2457999999999999999999999999888888


Q ss_pred             EEE
Q psy14542         91 VIL   93 (371)
Q Consensus        91 l~v   93 (371)
                      |.|
T Consensus        83 l~v   85 (85)
T cd05857          83 LDV   85 (85)
T ss_pred             EEC
Confidence            765

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.44  E-value=8e-13  Score=86.43  Aligned_cols=68  Identities=22%  Similarity=0.437  Sum_probs=58.6

Q ss_pred             cCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542         26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILG   94 (371)
Q Consensus        26 G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   94 (371)
                      |+.+.|.|. ..+.|.+.|.|+|+|..+...        ....|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus         1 g~~~~l~C~-a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~   76 (76)
T cd05868           1 GEDGTLICR-ANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL   76 (76)
T ss_pred             CCCEEEEEE-eeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence            788999995 567899999999999887532        33579999999999999999999999999998888773

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.44  E-value=1.4e-12  Score=90.15  Aligned_cols=77  Identities=23%  Similarity=0.321  Sum_probs=62.6

Q ss_pred             eeeeeeecCCeEEEEEEeecCCCC-ceEEEeCCcccccC--CceEEec--------ceEEEeccCC-CCCeEEEEEEEcC
Q psy14542        229 HRILNVKKDESVILPCSAQGNPLP-TIKWYKQDSPVEES--DRIQRIG--------SSLSISHVEE-SDSGVWNCVANNS  296 (371)
Q Consensus       229 ~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~--~~~~~~~--------~~l~i~~~~~-~d~G~Y~C~a~n~  296 (371)
                      .... +..|+.+.|.|.+.|.|.| .+.|++++..+...  .++....        ++|.|.++.. +|.|.|.|.|.|.
T Consensus         9 ~~~~-~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~   87 (98)
T cd05758           9 ATQY-AILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNS   87 (98)
T ss_pred             CcEE-EeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcC
Confidence            3344 8899999999999999999 59999999877653  3444221        3799999998 4599999999999


Q ss_pred             CCCceeEEEE
Q psy14542        297 EGQDKMQLFI  306 (371)
Q Consensus       297 ~g~~~~~~~l  306 (371)
                      .|.....+.|
T Consensus        88 ~G~~~~~~~L   97 (98)
T cd05758          88 FGSGTAIISL   97 (98)
T ss_pred             CCcccEEEEe
Confidence            9998888766

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>KOG3515|consensus

Probab=99.44  E-value=9.7e-13  Score=118.16  Aligned_cols=207  Identities=21%  Similarity=0.287  Sum_probs=140.3

Q ss_pred             eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCc
Q psy14542        107 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDR  186 (371)
Q Consensus       107 ~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~  186 (371)
                      .+..|+.|.|.|.+.+.++...+.|++.+..+..                          ++....+..|......++. 
T Consensus        18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~-   70 (741)
T KOG3515|consen   18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHG--------------------------RYATIADPTLVTTGDVRDT-   70 (741)
T ss_pred             hhccCCcceeeeecCCCCCCcceEEEecCccccc--------------------------ccccccCCceeeecchhhh-
Confidence            4589999999999999888799999998876651                          2223333567677766666 


Q ss_pred             cceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEee--cCCCCceEEEeCCcccc
Q psy14542        187 YRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQ--GNPLPTIKWYKQDSPVE  264 (371)
Q Consensus       187 ~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~--~~p~~~v~W~~~~~~~~  264 (371)
                      .+.|.|.+.|..........   .+.+.     .+|.......... ...+..+.+.|.+.  +.|.+++.|..++....
T Consensus        71 ~~~~~c~a~ns~~~~~~~~~---~l~v~-----~~pa~~~~~~e~~-~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~  141 (741)
T KOG3515|consen   71 VAELNCRAFNSVGMPSRCPM---ILDVD-----YPPACLPELGEIF-QVDKGVVQIICSAKVAGRPNPNLRWGFNNRAEL  141 (741)
T ss_pred             hhhhhhhhcccccCceecce---eeccc-----cCccccccccchh-hhcCCeEEEEEeecCCCCCCcceeeeeccEEee
Confidence            89999999988222222222   45555     5555555544444 67788899999654  46778999998876332


Q ss_pred             cCC------------ceEEecceEEEeccCCCCCeEEEEEEEcC---CCCceeEEEEEEecCcccccccceEEEEeeeec
Q psy14542        265 ESD------------RIQRIGSSLSISHVEESDSGVWNCVANNS---EGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEK  329 (371)
Q Consensus       265 ~~~------------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~---~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~  329 (371)
                      ...            ......+.+.+...+.++.|+|+|.|.|.   .+.....+.+.+..+...        +. +...
T Consensus       142 ~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~--------~~-~~~~  212 (741)
T KOG3515|consen  142 NAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKG--------IG-ITGA  212 (741)
T ss_pred             cccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeeccccccc--------ce-ecch
Confidence            211            11123456888888899999999999994   444555566666554441        11 1111


Q ss_pred             cccccccccccccceeeeeecCCeEEEeeeeec-CCCCccccC
Q psy14542        330 NKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLPTIKYR  371 (371)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p~i~W~  371 (371)
                      .. ..            .+.+|+.+.|.|.+.| +|.++++|+
T Consensus       213 ~~-~q------------sF~~g~~inlvc~~~gg~P~~~~~w~  242 (741)
T KOG3515|consen  213 QE-QQ------------SFTEGQTINLVCNAQGGNPSQQQTWY  242 (741)
T ss_pred             hh-cC------------cccccceEEEEehhhcCCcchhhhhc
Confidence            11 11            6779999999998885 688999996

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.44  E-value=9.1e-13  Score=89.51  Aligned_cols=72  Identities=22%  Similarity=0.421  Sum_probs=57.2

Q ss_pred             CCeEEEEEEeecCCCCceEEEeC----CcccccCCc--eE--E---------ecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        237 DESVILPCSAQGNPLPTIKWYKQ----DSPVEESDR--IQ--R---------IGSSLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       237 g~~~~l~C~~~~~p~~~v~W~~~----~~~~~~~~~--~~--~---------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      |+.+.|.|.+.|.|.|.|+|+++    +..+.....  ..  .         ..+.|.|.++..+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            67899999999999999999984    333322211  11  0         1147999999999999999999999999


Q ss_pred             ceeEEEEEE
Q psy14542        300 DKMQLFIQY  308 (371)
Q Consensus       300 ~~~~~~l~v  308 (371)
                      ...++.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            999988877

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.44  E-value=1.3e-12  Score=90.23  Aligned_cols=81  Identities=21%  Similarity=0.231  Sum_probs=64.4

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeEEE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGMYQ   75 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~Y~   75 (371)
                      +|+|. .+.. ..+.+|+++.|.|. ..+.|.+.+.|++++..+...              ....|.|.+++.+|+|.|+
T Consensus         2 ~P~i~-~~~~-~~~~~g~~v~l~C~-~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   78 (96)
T cd05732           2 QPKIT-YLEN-QTAVELEQITLTCE-AEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYD   78 (96)
T ss_pred             Cccce-ecCc-eeEecCCcEEEEEE-EeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeE
Confidence            45564 3444 68999999999995 456788999999987543311              3468999999999999999


Q ss_pred             EEEEcCCCCeEEEEEEEE
Q psy14542         76 CHVSADDDSAQMSAQVIL   93 (371)
Q Consensus        76 C~~~~~~~~~~~~~~l~v   93 (371)
                      |.+.|..|....++.|.|
T Consensus        79 C~a~N~~G~~~~s~~l~v   96 (96)
T cd05732          79 CEASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEEEeCCCCcEEEEEEeC
Confidence            999999999888887764

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.43  E-value=1.2e-12  Score=89.06  Aligned_cols=75  Identities=21%  Similarity=0.364  Sum_probs=62.4

Q ss_pred             CCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEEEEEEcCCCCeE
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQ   86 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   86 (371)
                      |.. +.+.+|+++.|.|.+ .+.|.+.+.|++++..+...          ...+|.|.+++.+|+|.|+|.+.|..|...
T Consensus         8 p~~-v~v~eG~~v~L~C~v-~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   85 (92)
T cd05891           8 PDV-VTIMEGKTLNLTCTV-FGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGET   85 (92)
T ss_pred             CCc-EEEcCCCEEEEEEEE-EEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCcee
Confidence            444 889999999999954 56788899999998765432          224799999999999999999999999988


Q ss_pred             EEEEEEE
Q psy14542         87 MSAQVIL   93 (371)
Q Consensus        87 ~~~~l~v   93 (371)
                      ..+.|.|
T Consensus        86 ~~~~v~~   92 (92)
T cd05891          86 VDVTVSV   92 (92)
T ss_pred             eEEEEEC
Confidence            8887764

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.43  E-value=2.5e-12  Score=95.17  Aligned_cols=114  Identities=16%  Similarity=0.296  Sum_probs=80.6

Q ss_pred             eEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CC-C
Q psy14542        175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PL-P  252 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~  252 (371)
                      +|.|.+++..| +|.|.|.+.+. .+......   .|.|.     .+|.+...+.... ...|+.+.|.|.+.|. |. +
T Consensus         2 sL~i~~v~~~D-~G~Y~C~~~~~-~~~~~~~~---~l~v~-----~~P~v~~~~~~~~-~~~~~~~~L~C~a~g~~P~~~   70 (139)
T cd05771           2 SLTLPGLTVHD-EGTYICSVSTP-PHQAQQII---QLSVS-----EPPRVRLSLEKLV-SMIEEPQTLICHIAGYYPLDV   70 (139)
T ss_pred             eEEECCCCHHH-CEEEEEEEEcc-CcceeeEE---EEEEe-----cCCceEEeCCCce-eecCCcEEEEEEECCCCCCCe
Confidence            68899999999 99999999887 66666666   78887     6777766555443 4478899999999985 54 4


Q ss_pred             ceEEEeCCccccc-----CCc----eE-------EecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        253 TIKWYKQDSPVEE-----SDR----IQ-------RIGSSLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       253 ~v~W~~~~~~~~~-----~~~----~~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      +|.|++++.....     ...    ..       ...+.|.+.....++...|+|.+.+....
T Consensus        71 ~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l~  133 (139)
T cd05771          71 QVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSLE  133 (139)
T ss_pred             EEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCCC
Confidence            8999999864221     110    11       11235666655566677999999876543

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.43  E-value=7.6e-13  Score=85.72  Aligned_cols=64  Identities=19%  Similarity=0.371  Sum_probs=53.9

Q ss_pred             EEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542         29 IELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL   93 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   93 (371)
                      +.|.| ...+.|.|.+.|+|++..+...           ...+|.|.+++.+|+|.|+|.+.|..|.......|.|
T Consensus         1 v~l~C-~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLEC-QISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEE-EEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            57999 4567899999999999887532           1237999999999999999999999999988888765

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.43  E-value=1.9e-12  Score=88.12  Aligned_cols=79  Identities=20%  Similarity=0.429  Sum_probs=61.8

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe-CCEEEeeC----------CeeEEEEccCCcCCCeEEEEEEEc
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRN----------SDEVLVLDRVQREDAGMYQCHVSA   80 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~-~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~~~   80 (371)
                      ++.+.|.. ..+..|+++.|.|.+. +.|. .+.|++ ++..+...          ...+|.|.+++.+|+|.|+|.+.|
T Consensus         2 ~v~v~p~~-~~v~~G~~~~l~C~~~-G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N   78 (92)
T cd04977           2 QVDIVPSQ-GEISVGESKFFLCQVI-GEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATD   78 (92)
T ss_pred             eEEEecCc-EEECCCCeEEEEEEeE-eeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEc
Confidence            57788888 8999999999999664 4454 899998 55544331          345899999999999999999999


Q ss_pred             CCC-CeEEEEEEEE
Q psy14542         81 DDD-SAQMSAQVIL   93 (371)
Q Consensus        81 ~~~-~~~~~~~l~v   93 (371)
                      ..| ....++.|.|
T Consensus        79 ~~g~~~~~sv~l~~   92 (92)
T cd04977          79 AKGTESEATVNLKI   92 (92)
T ss_pred             CCCCcceeEEEEEC
Confidence            854 4566776653

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.43  E-value=1.1e-12  Score=85.34  Aligned_cols=67  Identities=19%  Similarity=0.371  Sum_probs=58.0

Q ss_pred             cCcEEEEEEecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542         26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL   93 (371)
Q Consensus        26 G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   93 (371)
                      |+.+.|.|. ..+.|.+.+.|++++..+...      ...+|.|.+++.+|+|.|+|.+.|..|....++.|.|
T Consensus         1 G~~v~L~C~-~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECK-PKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEe-eeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            789999996 467788999999999877543      4568999999999999999999999999888887765

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.43  E-value=1.5e-12  Score=89.73  Aligned_cols=73  Identities=21%  Similarity=0.265  Sum_probs=63.0

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------------CeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------------SDEVLVLDRVQREDAGMYQCHVSADDDSA   85 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   85 (371)
                      ..+..|+.+.|.|. ..+.|.+.+.|+|||..+...               ...+|.|.+++.+|+|.|+|.|.|..|..
T Consensus        13 ~~~~~~~~~~l~~~-v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          13 EFANLHEVKEFVVE-VEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             EEEecCCcEEEEEE-EEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            67889999999995 567889999999999987643               12579999999999999999999999988


Q ss_pred             EEEEEEEEe
Q psy14542         86 QMSAQVILG   94 (371)
Q Consensus        86 ~~~~~l~v~   94 (371)
                      +.++.|.|.
T Consensus        92 ~~t~~l~V~  100 (101)
T cd05859          92 SYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEE
Confidence            888888775

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.42  E-value=1.1e-12  Score=87.10  Aligned_cols=78  Identities=17%  Similarity=0.244  Sum_probs=60.0

Q ss_pred             EEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-CeeEEEEccCCcCCCeEEEEEEEcCCCCe-EEEEEE
Q psy14542         14 EMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-SDEVLVLDRVQREDAGMYQCHVSADDDSA-QMSAQV   91 (371)
Q Consensus        14 ~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l   91 (371)
                      .+.++. ..+.+|++++|.|....+.+...+.|+|++..+... ....|.|.+++.+|+|.|+|.+.+..+.. +..+.|
T Consensus         3 ~l~~p~-~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i   81 (83)
T cd05753           3 LLQVPS-RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSI   81 (83)
T ss_pred             EEECCc-ceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccCCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEE
Confidence            344555 579999999999975455666789999999877543 46789999999999999999999877643 333444


Q ss_pred             E
Q psy14542         92 I   92 (371)
Q Consensus        92 ~   92 (371)
                      +
T Consensus        82 ~   82 (83)
T cd05753          82 T   82 (83)
T ss_pred             E
Confidence            3

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.42  E-value=3.1e-12  Score=87.05  Aligned_cols=74  Identities=23%  Similarity=0.542  Sum_probs=57.6

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEe-CCcccccCCceEE-e----cceEEEeccCCCCCeEEEEEEEcCCC-CceeEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYK-QDSPVEESDRIQR-I----GSSLSISHVEESDSGVWNCVANNSEG-QDKMQLFI  306 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~-~----~~~l~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l  306 (371)
                      +..|+.+.|.|.+.|.|. .+.|++ ++..+....++.. .    .++|.|.++..+|+|.|+|.|.|..| ....++.|
T Consensus        12 v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l   90 (92)
T cd04977          12 ISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNL   90 (92)
T ss_pred             ECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEE
Confidence            889999999999999874 999997 5655554444331 1    24799999999999999999999965 45666666


Q ss_pred             EE
Q psy14542        307 QY  308 (371)
Q Consensus       307 ~v  308 (371)
                      .|
T Consensus        91 ~~   92 (92)
T cd04977          91 KI   92 (92)
T ss_pred             EC
Confidence            43

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.41  E-value=2.2e-12  Score=87.27  Aligned_cols=71  Identities=20%  Similarity=0.395  Sum_probs=58.7

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCCcCCCeEEEEEEEcCCCCe-EEEEEEEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQCHVSADDDSA-QMSAQVIL   93 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v   93 (371)
                      ..+.+|++++|.|.+ .+. .+.+.|++++..+...      ...+|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        13 ~~v~~g~~v~l~C~a-~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V   90 (91)
T cd05740          13 QPPEDNQPVTLTCEA-EGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV   90 (91)
T ss_pred             cccccCCcEEEEEEe-CCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence            679999999999954 556 8899999998876433      44689999999999999999999999875 44666665

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.41  E-value=7.4e-13  Score=86.90  Aligned_cols=66  Identities=27%  Similarity=0.567  Sum_probs=54.7

Q ss_pred             EEEEEEeec-CCCCceEEEeCCcccccCCceE-------EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEE
Q psy14542        240 VILPCSAQG-NPLPTIKWYKQDSPVEESDRIQ-------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLF  305 (371)
Q Consensus       240 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  305 (371)
                      +.|.|.+.| .|.|.+.|++++..+....+..       ...++|.|.++..+|+|.|+|.|.|..|....++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            368999999 9999999999999887554322       12357999999999999999999999999877664

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.41  E-value=2.5e-12  Score=86.42  Aligned_cols=79  Identities=24%  Similarity=0.372  Sum_probs=63.3

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEE
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSA   89 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   89 (371)
                      +.+.++....+.+|++++|.|....+.|.+.+.|++++..+...   ..+.|.|.+++.+|+|.|.|.+.|..|.....+
T Consensus         3 ~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~   82 (85)
T cd05754           3 VTVEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATA   82 (85)
T ss_pred             EEecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEE
Confidence            44445554789999999999976555688899999987654322   467899999999999999999999988877766


Q ss_pred             EE
Q psy14542         90 QV   91 (371)
Q Consensus        90 ~l   91 (371)
                      .|
T Consensus        83 ~l   84 (85)
T cd05754          83 TL   84 (85)
T ss_pred             EE
Confidence            55

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.40  E-value=2.3e-12  Score=84.73  Aligned_cols=67  Identities=24%  Similarity=0.395  Sum_probs=58.3

Q ss_pred             cCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542         26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL   93 (371)
Q Consensus        26 G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   93 (371)
                      |+.+.|.|. ..+.|.+.+.|++++..+...        ....|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~~~l~C~-~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCE-AEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEE-ceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            789999995 567889999999999876432        4578999999999999999999999999888888876

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.39  E-value=2.3e-12  Score=85.03  Aligned_cols=68  Identities=28%  Similarity=0.459  Sum_probs=57.5

Q ss_pred             CcEEEEEEecC-CCCCCeeEEEeCCEEEee--C-----------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEE
Q psy14542         27 HRIELHCRVSP-KRLSSAKAWLKDGLVLRR--N-----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI   92 (371)
Q Consensus        27 ~~v~l~C~~~~-~~~~~~~~W~~~~~~~~~--~-----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~   92 (371)
                      +++.|.|.+.. ..+...|.|++||+.+..  .           ..+.|.|.+++..|+|.|+|.|.+..+....+..|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            47899996553 455788999999998862  1           235799999999999999999999999999999999


Q ss_pred             Ee
Q psy14542         93 LG   94 (371)
Q Consensus        93 v~   94 (371)
                      |.
T Consensus        81 V~   82 (85)
T cd05853          81 VR   82 (85)
T ss_pred             Ee
Confidence            98

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.39  E-value=3.9e-12  Score=85.01  Aligned_cols=67  Identities=24%  Similarity=0.400  Sum_probs=56.0

Q ss_pred             CcEEEEEEecCCCCCC--eeEEEeCCEEEeeC-------------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEE
Q psy14542         27 HRIELHCRVSPKRLSS--AKAWLKDGLVLRRN-------------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV   91 (371)
Q Consensus        27 ~~v~l~C~~~~~~~~~--~~~W~~~~~~~~~~-------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   91 (371)
                      ++++|.|. ..+.|.+  .+.|++++..+...             ..++|.|.+++..|+|.|+|.|.|..|.....+.|
T Consensus         1 ~~~~L~C~-a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L   79 (85)
T cd05854           1 ENLTLQCH-ASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATL   79 (85)
T ss_pred             CcEEEEEE-EecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEE
Confidence            46899994 4555655  68999999876431             24689999999999999999999999999999999


Q ss_pred             EEe
Q psy14542         92 ILG   94 (371)
Q Consensus        92 ~v~   94 (371)
                      .|.
T Consensus        80 ~V~   82 (85)
T cd05854          80 VVR   82 (85)
T ss_pred             EEE
Confidence            998

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.39  E-value=2.7e-12  Score=85.60  Aligned_cols=72  Identities=25%  Similarity=0.469  Sum_probs=57.2

Q ss_pred             CCeEEEEEEeecCCCCceEEEeCCc---cc--ccC---CceE-EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEE
Q psy14542        237 DESVILPCSAQGNPLPTIKWYKQDS---PV--EES---DRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ  307 (371)
Q Consensus       237 g~~~~l~C~~~~~p~~~v~W~~~~~---~~--~~~---~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  307 (371)
                      |+.+.|.|.+.|.|.|.+.|++++.   .+  ...   .++. ...+.|.|.++..+|+|.|.|.|.|..|.....+.|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS   80 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence            6789999999999999999999742   11  111   1111 2346899999999999999999999999999988886


Q ss_pred             E
Q psy14542        308 Y  308 (371)
Q Consensus       308 v  308 (371)
                      |
T Consensus        81 v   81 (81)
T cd05765          81 V   81 (81)
T ss_pred             C
Confidence            5

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.39  E-value=1.5e-12  Score=84.50  Aligned_cols=64  Identities=20%  Similarity=0.341  Sum_probs=53.6

Q ss_pred             EEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542         29 IELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL   93 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   93 (371)
                      +.|.| ...+.|.|.+.|+|++..+...           ....|.|.+++.+|+|.|+|.|.|..|..+.+..|.|
T Consensus         1 v~l~C-~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLEC-RVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEE-EEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            57999 5578899999999998877532           1126999999999999999999999999988887764

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.39  E-value=3.5e-12  Score=85.91  Aligned_cols=69  Identities=19%  Similarity=0.356  Sum_probs=58.8

Q ss_pred             cCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEE
Q psy14542         26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV   91 (371)
Q Consensus        26 G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   91 (371)
                      |+.++|.|.+ .+.|.+.+.|+|++..+...              ...+|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus         1 g~~~~l~C~~-~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L   79 (88)
T cd05735           1 GQKKEMSCTA-HGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL   79 (88)
T ss_pred             CCeEEEEEEE-ECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence            7899999965 46688899999998766432              12679999999999999999999999999999999


Q ss_pred             EEec
Q psy14542         92 ILGG   95 (371)
Q Consensus        92 ~v~~   95 (371)
                      .|.+
T Consensus        80 ~V~~   83 (88)
T cd05735          80 TVQE   83 (88)
T ss_pred             EEeC
Confidence            9983

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.39  E-value=2.9e-12  Score=85.84  Aligned_cols=72  Identities=18%  Similarity=0.351  Sum_probs=58.4

Q ss_pred             CCeEEEEEEeecC--CCCceEEEeCCcccccCCc---------eEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEE
Q psy14542        237 DESVILPCSAQGN--PLPTIKWYKQDSPVEESDR---------IQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLF  305 (371)
Q Consensus       237 g~~~~l~C~~~~~--p~~~v~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  305 (371)
                      |+.+.|.|.+.+.  |.+.+.|.+++..+.....         .....+.|.|.+++.+|+|.|+|.|.|..|....+..
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            6889999999998  8889999988765432211         0123458999999999999999999999999988888


Q ss_pred             EEE
Q psy14542        306 IQY  308 (371)
Q Consensus       306 l~v  308 (371)
                      |.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            876

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.39  E-value=1.9e-12  Score=84.59  Aligned_cols=73  Identities=21%  Similarity=0.411  Sum_probs=55.6

Q ss_pred             eeeeeeeeeeecCCeEEEEEEeecCCC-CceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542        225 MFEKHRILNVKKDESVILPCSAQGNPL-PTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ  303 (371)
Q Consensus       225 ~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  303 (371)
                      ...+.... +.+|++++|.|.+.+.|. ..+.|++||..+..      .++.|.|.++ .+|+|.|+|.|.|.  ..+..
T Consensus         4 ~~~P~~~~-v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~------~~~~l~i~~~-~~dsG~Y~C~a~~~--~~S~~   73 (78)
T cd05752           4 SLDPPWTT-IFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET------TTNSYRIRAA-NNDSGEYRCQTQGS--SLSDP   73 (78)
T ss_pred             EeCCCCeE-eeCCCCEEEEEeCCCCCCCccEEEEECCEEeec------cCCeEEEeec-ccCCEEeEEECCCC--cCCCC
Confidence            33444444 899999999999998876 46999999987732      3568999999 99999999999875  33334


Q ss_pred             EEEE
Q psy14542        304 LFIQ  307 (371)
Q Consensus       304 ~~l~  307 (371)
                      +.|.
T Consensus        74 v~l~   77 (78)
T cd05752          74 VHLE   77 (78)
T ss_pred             EEEe
Confidence            4443

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.38  E-value=2.3e-12  Score=87.62  Aligned_cols=73  Identities=18%  Similarity=0.268  Sum_probs=59.5

Q ss_pred             EEEeccCcEEEEEEecCC----CCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEE
Q psy14542         21 VVVDVGHRIELHCRVSPK----RLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQM   87 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~----~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   87 (371)
                      ..+.+|+++.|.|.+...    .|.+.+.|||++..+...         ....|.|.+++.+|+|.|+|.+.|..|..+.
T Consensus         9 ~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~   88 (94)
T cd05756           9 SYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMKV   88 (94)
T ss_pred             EEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEEE
Confidence            578899999999954433    578899999988653210         3568999999999999999999999998888


Q ss_pred             EEEEEE
Q psy14542         88 SAQVIL   93 (371)
Q Consensus        88 ~~~l~v   93 (371)
                      .+.|.|
T Consensus        89 ~~~L~v   94 (94)
T cd05756          89 SISLTV   94 (94)
T ss_pred             EEEEEC
Confidence            887764

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.38  E-value=5.8e-12  Score=87.92  Aligned_cols=82  Identities=26%  Similarity=0.441  Sum_probs=63.1

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEE---EE--ccCCcCCCeE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVL---VL--DRVQREDAGM   73 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l---~i--~~~~~~d~G~   73 (371)
                      +|.+...|.. ..+.+|+.+.|.| ...+.|.+.+.|+|+|..+...           ..+.+   .+  ..++.+|+|.
T Consensus         1 ~P~i~~~p~~-~~v~~G~~~~l~C-~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~   78 (100)
T cd07693           1 PPRIVEHPSD-LIVSKGDPATLNC-KAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGV   78 (100)
T ss_pred             CCeEEecCce-eEEcCCCeEEEEe-eCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEE
Confidence            4678888888 8999999999999 5567788999999999887651           11222   22  2347899999


Q ss_pred             EEEEEEcCCCC-eEEEEEEEE
Q psy14542         74 YQCHVSADDDS-AQMSAQVIL   93 (371)
Q Consensus        74 Y~C~~~~~~~~-~~~~~~l~v   93 (371)
                      |+|.+.|..|. .+..+.|.|
T Consensus        79 Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          79 YVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEEEccccceecceEEEEe
Confidence            99999999998 566677665

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.38  E-value=2.2e-12  Score=83.24  Aligned_cols=65  Identities=26%  Similarity=0.512  Sum_probs=54.7

Q ss_pred             cEEEEEEecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542         28 RIELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL   93 (371)
Q Consensus        28 ~v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   93 (371)
                      .+.|.|.+ .+.|.+.+.|+|++..+...      ....|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 ~v~l~C~~-~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEV-TGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEE-EEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            47899954 67899999999999876543      3456889999999999999999999999888888764

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.37  E-value=2.6e-12  Score=85.99  Aligned_cols=72  Identities=28%  Similarity=0.479  Sum_probs=60.1

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL   93 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   93 (371)
                      +....|+++.|.|. ..+.|.+.+.|++++..+...       ...+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         4 ~~~~~G~~v~L~C~-~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v   82 (82)
T cd05856           4 IARPVGSSVRLKCV-ASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV   82 (82)
T ss_pred             eeccCCCeEEEEEE-eeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence            45778999999995 556788899999998866432       3468999999999999999999999998887777764

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.37  E-value=2.5e-12  Score=82.78  Aligned_cols=65  Identities=20%  Similarity=0.343  Sum_probs=54.6

Q ss_pred             EEEEEEecCCCCCCeeEEEeCCEEEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542         29 IELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILG   94 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   94 (371)
                      +.|.|. ..+.|.+.+.|+|+|..+...     ...+|.|.+++.+|+|.|+|.+.|..|.....+.+.+.
T Consensus         1 ~~l~c~-v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVK-VKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeE-EEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            468995 467889999999999887644     56789999999999999999999999888777776653

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.37  E-value=2.2e-12  Score=82.23  Aligned_cols=64  Identities=17%  Similarity=0.258  Sum_probs=53.1

Q ss_pred             EEEEEEecCCCCCCeeEEEeCCEEEeeC----CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542         29 IELHCRVSPKRLSSAKAWLKDGLVLRRN----SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL   93 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   93 (371)
                      +.|.|. ..+.|.+.+.|+|||..+...    ....|.|.++..+|+|.|+|.+.|..|.......+.+
T Consensus         1 ~~~~c~-v~G~P~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           1 VKIPVK-YYGYPPPEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             CEEEeE-EEEeCCCEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            468994 568899999999999988654    3457999999999999999999999987766655554

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.37  E-value=5.6e-12  Score=82.27  Aligned_cols=65  Identities=23%  Similarity=0.391  Sum_probs=55.4

Q ss_pred             cEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542         28 RIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL   93 (371)
Q Consensus        28 ~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   93 (371)
                      .+.|.| ...+.|.+.+.|+|+|..+...         ....|.|.+++.+|+|.|+|.+.|..|....++.|.|
T Consensus         1 ~~~l~c-~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEV-PISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEe-eEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            478999 5578899999999999887433         4568999999999999999999999999888888764

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.37  E-value=7.3e-12  Score=85.29  Aligned_cols=66  Identities=30%  Similarity=0.641  Sum_probs=55.0

Q ss_pred             cCCeEEEEEEeecCCCCceEEEeCCccccc--CCceEEecceEEEeccC-CCCCeEEEEEEEcCCCCce
Q psy14542        236 KDESVILPCSAQGNPLPTIKWYKQDSPVEE--SDRIQRIGSSLSISHVE-ESDSGVWNCVANNSEGQDK  301 (371)
Q Consensus       236 ~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~--~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~  301 (371)
                      .|+.+.|.|.+.|+|.|+++|++++..+..  ..++...++.|.|.++. .+|+|.|+|.|.|..|...
T Consensus        18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~   86 (91)
T cd04967          18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVL   86 (91)
T ss_pred             CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence            446799999999999999999999988743  34555667889998876 5899999999999999753

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.36  E-value=2.9e-12  Score=82.67  Aligned_cols=64  Identities=25%  Similarity=0.413  Sum_probs=54.5

Q ss_pred             EEEEEEecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542         29 IELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL   93 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   93 (371)
                      +.|.| ...+.|.+.+.|+|++..+...      ...+|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 ~~L~C-~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLEC-IAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEE-EeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            47899 5578899999999987655432      5578999999999999999999999999888888876

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.36  E-value=4.9e-12  Score=82.38  Aligned_cols=64  Identities=20%  Similarity=0.362  Sum_probs=53.6

Q ss_pred             EEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542         29 IELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL   93 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   93 (371)
                      +.|.| ...+.|.+.+.|+|++..+...           ...+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 v~L~C-~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLEC-RVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEE-EEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            47999 4578899999999999887632           1236999999999999999999999999888887764

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.36  E-value=5e-12  Score=83.59  Aligned_cols=69  Identities=39%  Similarity=0.595  Sum_probs=53.6

Q ss_pred             EEEEEEeecCCCCceEEEeCCcccc--------cCCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEE
Q psy14542        240 VILPCSAQGNPLPTIKWYKQDSPVE--------ESDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQY  308 (371)
Q Consensus       240 ~~l~C~~~~~p~~~v~W~~~~~~~~--------~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v  308 (371)
                      ++|.|.+.|+|.|.+.|++++....        ...++. ..+++|.|.++..+|+|.|.|.|.|..|.. +..+.|.|
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~   79 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV   79 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence            4799999999999999999754211        223443 356789999999999999999999999986 55555543

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.34  E-value=4.6e-12  Score=81.21  Aligned_cols=62  Identities=21%  Similarity=0.426  Sum_probs=52.9

Q ss_pred             EEEEEEecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEE
Q psy14542         29 IELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV   91 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   91 (371)
                      |.|.| ...+.|.+.+.|+|++..+...      ..+.|.|.+++.+|+|.|+|.+.|..|.....+.|
T Consensus         1 v~L~C-~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPC-SAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEe-cceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            57999 4567889999999999877543      46689999999999999999999999988777665

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.34  E-value=8.4e-12  Score=84.25  Aligned_cols=75  Identities=23%  Similarity=0.399  Sum_probs=61.7

Q ss_pred             eecCCeEEEEEEeec-----CCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        234 VKKDESVILPCSAQG-----NPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~-----~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      +..|....|.|...+     +|.|.+.|++++.++....+....++.|.|.++..+|+|.|+|.|.|..+.....+...+
T Consensus         7 ~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~t~   86 (92)
T cd05757           7 LFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTRTI   86 (92)
T ss_pred             EeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEEEEE
Confidence            788999999998653     257899999999988766554446789999999999999999999999988766555444

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.34  E-value=2.3e-11  Score=83.13  Aligned_cols=74  Identities=24%  Similarity=0.422  Sum_probs=57.5

Q ss_pred             ceEEEeCCCcEEEecc---CcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCC-cCCCeEEEEEEE
Q psy14542         11 LSIEMSPSGQVVVDVG---HRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQ-REDAGMYQCHVS   79 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G---~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~-~~d~G~Y~C~~~   79 (371)
                      |.+...|.. ..+.+|   +.++|.|. ..+.|.+.++|+++|..+...       ..++|.|.++. ..|+|.|+|.|.
T Consensus         2 P~f~~~P~~-~~~~~~~~g~~v~l~C~-a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~   79 (94)
T cd05850           2 PVFEEQPSS-LLFPEGSPEEKVTLGCR-ARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAI   79 (94)
T ss_pred             CeeEECCCC-EEecCCCCCCeEEEEeE-ceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEE
Confidence            445566776 666565   57999994 567889999999999887532       34678888765 599999999999


Q ss_pred             cCCCCeE
Q psy14542         80 ADDDSAQ   86 (371)
Q Consensus        80 ~~~~~~~   86 (371)
                      |..|...
T Consensus        80 N~~G~~~   86 (94)
T cd05850          80 NRCGTVV   86 (94)
T ss_pred             cCcCcEE
Confidence            9988764

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.34  E-value=1.3e-11  Score=81.76  Aligned_cols=63  Identities=19%  Similarity=0.366  Sum_probs=55.6

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccC-CceEEecceEEEeccCCCCCeEEEEEEEcCC
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEES-DRIQRIGSSLSISHVEESDSGVWNCVANNSE  297 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  297 (371)
                      +..|+++.|.|.+.+ +.+++.|++||.++..+ .++...++.|.|.++..+|+|.|+|.|.+..
T Consensus         8 v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           8 FKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             EECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            889999999999764 67899999999988766 5667778889999999999999999999865

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.33  E-value=1.4e-11  Score=84.19  Aligned_cols=74  Identities=19%  Similarity=0.379  Sum_probs=58.1

Q ss_pred             ceEEEeCCCcEEEe---ccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCC-cCCCeEEEEEEE
Q psy14542         11 LSIEMSPSGQVVVD---VGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQ-REDAGMYQCHVS   79 (371)
Q Consensus        11 ~~~~~~p~~~~~~~---~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~-~~d~G~Y~C~~~   79 (371)
                      |.+...|.. +.+.   +|+.++|.|. ..+.|.+.+.|+|+|..+...       .+++|.|.++. .+|+|.|+|.|.
T Consensus         2 P~f~~~p~~-~~~~~~~~g~~v~l~C~-~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~   79 (94)
T cd05848           2 PVFVQEPDD-AIFPTDSDEKKVILNCE-ARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLAT   79 (94)
T ss_pred             CeeEECCCc-EEccCCCCCCEEEEEEE-eeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEE
Confidence            456666766 5444   4789999995 577899999999999887532       34678898875 699999999999


Q ss_pred             cCCCCeE
Q psy14542         80 ADDDSAQ   86 (371)
Q Consensus        80 ~~~~~~~   86 (371)
                      |..|...
T Consensus        80 N~~G~~~   86 (94)
T cd05848          80 NSIGSIL   86 (94)
T ss_pred             cCCCeEE
Confidence            9988663

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.33  E-value=6.3e-12  Score=80.74  Aligned_cols=64  Identities=22%  Similarity=0.391  Sum_probs=53.7

Q ss_pred             EEEEEEecCCCCCCeeEEEeCCEEEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542         29 IELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL   93 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   93 (371)
                      ++|.|. ..+.|.+.+.|+|++..+...     ...+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 v~l~C~-~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCE-VGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEE-CccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            479994 567889999999987665433     4668999999999999999999999998888877764

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.33  E-value=9.4e-12  Score=79.40  Aligned_cols=63  Identities=25%  Similarity=0.443  Sum_probs=52.0

Q ss_pred             cCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEE
Q psy14542         26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV   91 (371)
Q Consensus        26 G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   91 (371)
                      |++++|.| ...+.|.+.|.|+|++..+...     ....|.|.+++  |+|.|+|.|.|..|....++.|
T Consensus         1 G~~v~L~C-~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTC-VAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEE-EeeecCCCEEEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            78899999 5678899999999999876543     34578899874  8999999999999987776665

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.33  E-value=4.7e-12  Score=83.08  Aligned_cols=62  Identities=26%  Similarity=0.598  Sum_probs=50.1

Q ss_pred             EEEEEEeecCCCCceEEEeCCcccccC--CceE--EecceEEEeccCC----CCCeEEEEEEEcCCCCce
Q psy14542        240 VILPCSAQGNPLPTIKWYKQDSPVEES--DRIQ--RIGSSLSISHVEE----SDSGVWNCVANNSEGQDK  301 (371)
Q Consensus       240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~--~~~~--~~~~~l~i~~~~~----~d~G~Y~C~a~n~~g~~~  301 (371)
                      +.|.|.+.|.|.|+++|++++..+...  .++.  ..++.|.|..+..    +|+|.|+|.|.|..|...
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI   70 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence            468999999999999999999887543  2333  3457899988754    789999999999999753

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.33  E-value=1.3e-11  Score=82.83  Aligned_cols=67  Identities=25%  Similarity=0.432  Sum_probs=55.8

Q ss_pred             CcEEEEEEecCCCCCC--eeEEEeCCEEEeeC-------------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEE
Q psy14542         27 HRIELHCRVSPKRLSS--AKAWLKDGLVLRRN-------------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV   91 (371)
Q Consensus        27 ~~v~l~C~~~~~~~~~--~~~W~~~~~~~~~~-------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   91 (371)
                      +++.|.|.+ .+.|.+  .+.|+++|..+...             ..++|.|.+++.+|+|.|+|.+.|..|.....+.|
T Consensus         1 e~~~L~C~~-~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l   79 (85)
T cd04970           1 ESITLQCHA-SHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADL   79 (85)
T ss_pred             CcEEEEEEE-ecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEE
Confidence            468999965 555655  67999999876522             34679999999999999999999999999999999


Q ss_pred             EEe
Q psy14542         92 ILG   94 (371)
Q Consensus        92 ~v~   94 (371)
                      .|.
T Consensus        80 ~V~   82 (85)
T cd04970          80 IVR   82 (85)
T ss_pred             EEE
Confidence            988

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.33  E-value=2.1e-11  Score=81.29  Aligned_cols=73  Identities=22%  Similarity=0.447  Sum_probs=56.6

Q ss_pred             CCeEEEEEEeecCCCCceEEEeCCcccccCC----ceE----EecceEEEeccCCCCCeEEEEEEEcCCC--CceeEEEE
Q psy14542        237 DESVILPCSAQGNPLPTIKWYKQDSPVEESD----RIQ----RIGSSLSISHVEESDSGVWNCVANNSEG--QDKMQLFI  306 (371)
Q Consensus       237 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~----~~~----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~l  306 (371)
                      |+++.|.|.+.+.|.+.+.|+++++......    +..    ...++|.|.+++.+|+|.|.|.|.|..+  ....++.|
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            6889999999999999999998776432111    111    1245799999999999999999999876  56777777


Q ss_pred             EEe
Q psy14542        307 QYA  309 (371)
Q Consensus       307 ~v~  309 (371)
                      .|.
T Consensus        81 ~V~   83 (84)
T cd05861          81 TVH   83 (84)
T ss_pred             EEe
Confidence            775

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.33  E-value=1.1e-11  Score=81.08  Aligned_cols=63  Identities=22%  Similarity=0.575  Sum_probs=49.5

Q ss_pred             EEEEEEeecCCCCceEEEeCCcccccC--CceE--EecceEEEeccCC----CCCeEEEEEEEcCCCCcee
Q psy14542        240 VILPCSAQGNPLPTIKWYKQDSPVEES--DRIQ--RIGSSLSISHVEE----SDSGVWNCVANNSEGQDKM  302 (371)
Q Consensus       240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~--~~~~--~~~~~l~i~~~~~----~d~G~Y~C~a~n~~g~~~~  302 (371)
                      +.|.|.+.|.|.|+++|++++..+...  .++.  ..+++|.|..+..    .|.|.|+|.|.|..|....
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            468999999999999999999876432  2333  2467888887764    3789999999999998544

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.32  E-value=1.2e-11  Score=80.85  Aligned_cols=63  Identities=30%  Similarity=0.634  Sum_probs=49.5

Q ss_pred             EEEEEEeecCCCCceEEEeCCcccc--cCCceE--EecceEEEeccC----CCCCeEEEEEEEcCCCCcee
Q psy14542        240 VILPCSAQGNPLPTIKWYKQDSPVE--ESDRIQ--RIGSSLSISHVE----ESDSGVWNCVANNSEGQDKM  302 (371)
Q Consensus       240 ~~l~C~~~~~p~~~v~W~~~~~~~~--~~~~~~--~~~~~l~i~~~~----~~d~G~Y~C~a~n~~g~~~~  302 (371)
                      +.|.|.+.|+|.|.++|++++..+.  ...++.  ..+++|.|..+.    .+|+|.|+|.|.|..|....
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS   71 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence            3689999999999999999998653  334444  246789998764    24699999999999997543

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.32  E-value=2.3e-11  Score=85.45  Aligned_cols=84  Identities=17%  Similarity=0.299  Sum_probs=65.0

Q ss_pred             cceEEEeCCCcEEE---eccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------------CeeEEEEccCC-cCCC
Q psy14542         10 SLSIEMSPSGQVVV---DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------------SDEVLVLDRVQ-REDA   71 (371)
Q Consensus        10 ~~~~~~~p~~~~~~---~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~-~~d~   71 (371)
                      +|.+...|.....+   ..|+.++|.|. +.+.|.+.+.|+|+|..+...              ....|.|.+++ .+|.
T Consensus         4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~-a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~   82 (109)
T cd05773           4 APDLQKGPQLRKVASRGDGSSDANLVCQ-AQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDY   82 (109)
T ss_pred             ccccccCCceEEEEEecCCCCEEEEEEE-CcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCC
Confidence            45555555531222   24678999995 567888999999999877532              13579999997 5899


Q ss_pred             eEEEEEEEcCCCCeEEEEEEEEe
Q psy14542         72 GMYQCHVSADDDSAQMSAQVILG   94 (371)
Q Consensus        72 G~Y~C~~~~~~~~~~~~~~l~v~   94 (371)
                      |.|+|.|.|..|.....+.|.|.
T Consensus        83 G~Y~C~A~N~~G~~~~~i~L~~~  105 (109)
T cd05773          83 ALFTCTAHNSLGEDSLDIQLVST  105 (109)
T ss_pred             EEEEEEEEeCCccCcEEEEEEec
Confidence            99999999999999999999987

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.32  E-value=8.5e-12  Score=81.85  Aligned_cols=65  Identities=20%  Similarity=0.400  Sum_probs=52.6

Q ss_pred             EEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEEEcCCCCeE--EEEEEEEe
Q psy14542         29 IELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHVSADDDSAQ--MSAQVILG   94 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~l~v~   94 (371)
                      ++|.|. ..+.|.+.+.|+|+|..+...        ....|.|.+++.+|+|.|+|.+.|..|...  ..+.|.|.
T Consensus         1 v~L~C~-~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760           1 VTLRCH-IDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             CEEEEE-eeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            579995 567889999999999877543        345899999999999999999999988763  45666654

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.32  E-value=1.5e-11  Score=80.27  Aligned_cols=67  Identities=21%  Similarity=0.456  Sum_probs=55.5

Q ss_pred             cCcEEEEEEecCCCCCCeeEEEe-CCEEEeeC------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542         26 GHRIELHCRVSPKRLSSAKAWLK-DGLVLRRN------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL   93 (371)
Q Consensus        26 G~~v~l~C~~~~~~~~~~~~W~~-~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   93 (371)
                      |+.+.|.|. ..+.|.+.+.|++ ++..+...      ..++|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 G~~~~l~C~-~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCK-ARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEE-ccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            789999995 5677899999997 56555432      4568999999999999999999999998888777764

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.32  E-value=2.1e-11  Score=83.78  Aligned_cols=78  Identities=27%  Similarity=0.484  Sum_probs=60.6

Q ss_pred             EEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccC-----CcCCCeEEEEEEEc
Q psy14542         14 EMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRV-----QREDAGMYQCHVSA   80 (371)
Q Consensus        14 ~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~-----~~~d~G~Y~C~~~~   80 (371)
                      ...|.. ..+.+|+++.|.|. ..+.|.+.+.|+|+|..+...        .+++|.|.++     +.+|+|.|+|.+.|
T Consensus         3 ~~~P~~-~~~~~g~~v~l~C~-v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N   80 (95)
T cd05722           3 LSEPSD-IVAVRGGPVVLNCS-AEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQN   80 (95)
T ss_pred             EECCCC-eEEcCCCCEEEeee-cccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEEC
Confidence            446666 78889999999995 556789999999999877533        3455777766     58899999999999


Q ss_pred             C-CCCe-EEEEEEEE
Q psy14542         81 D-DDSA-QMSAQVIL   93 (371)
Q Consensus        81 ~-~~~~-~~~~~l~v   93 (371)
                      . .|.. +..+.|.|
T Consensus        81 ~~~G~~~s~~~~l~v   95 (95)
T cd05722          81 DSLGSIVSRTARLTV   95 (95)
T ss_pred             CccCcEEEeeeEEeC
Confidence            9 7765 45566653

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.32  E-value=1.1e-11  Score=80.59  Aligned_cols=61  Identities=13%  Similarity=0.266  Sum_probs=51.4

Q ss_pred             EEEEecCCCCCCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEE
Q psy14542         31 LHCRVSPKRLSSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI   92 (371)
Q Consensus        31 l~C~~~~~~~~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~   92 (371)
                      |.| ...+.|.|.++|+|||..+...              ..+.|.|.+++.+|+|.|+|.|.|..|+...++.+.
T Consensus         3 i~~-~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPF-TVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEE-EEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            677 4578899999999999888543              235799999999999999999999999888777664

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.31  E-value=2.3e-11  Score=82.04  Aligned_cols=75  Identities=33%  Similarity=0.567  Sum_probs=62.6

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE-----ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR-----IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      +..|+.+.|.|.+.+.|.+.+.|++++..+........     ....|.|.++..+|+|.|.|.+.|..|....++.|.|
T Consensus         6 ~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~v   85 (85)
T cd05729           6 VPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVDV   85 (85)
T ss_pred             ecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEeC
Confidence            67899999999999999999999999987765433321     1236899999999999999999999999888887764

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.31  E-value=3.3e-11  Score=81.89  Aligned_cols=74  Identities=20%  Similarity=0.309  Sum_probs=56.7

Q ss_pred             ceEEEeCCCcEEEecc---CcEEEEEEecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCC-cCCCeEEEEEEEc
Q psy14542         11 LSIEMSPSGQVVVDVG---HRIELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQ-REDAGMYQCHVSA   80 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G---~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~-~~d~G~Y~C~~~~   80 (371)
                      |.+...|.. ..+.++   +.+.|.| ...+.|.+.+.|+|++..+...      .++.|.|.++. .+|+|.|+|.|.|
T Consensus         2 P~f~~~P~~-~~~~~~~~~~~v~l~C-~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N   79 (93)
T cd05849           2 PVFEEQPID-TIYPEESTEGKVSVNC-RARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSN   79 (93)
T ss_pred             CEEEECCCC-EEecCCccCCeEEEeC-cCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEe
Confidence            445555665 545444   4799999 5578899999999999877532      34689999885 6899999999999


Q ss_pred             CCCCeE
Q psy14542         81 DDDSAQ   86 (371)
Q Consensus        81 ~~~~~~   86 (371)
                      ..|...
T Consensus        80 ~~G~~~   85 (93)
T cd05849          80 IYGKVR   85 (93)
T ss_pred             CcceEE
Confidence            988763

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.30  E-value=2.1e-11  Score=80.13  Aligned_cols=69  Identities=16%  Similarity=0.351  Sum_probs=57.0

Q ss_pred             EEeCCCcEEEeccCcEEEEEEecCCCCCC-eeEEEeCCEEEee---CCeeEEEEccCCcCCCeEEEEEEEcCCCCeE
Q psy14542         14 EMSPSGQVVVDVGHRIELHCRVSPKRLSS-AKAWLKDGLVLRR---NSDEVLVLDRVQREDAGMYQCHVSADDDSAQ   86 (371)
Q Consensus        14 ~~~p~~~~~~~~G~~v~l~C~~~~~~~~~-~~~W~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   86 (371)
                      ...|+. +.+.+|+++.|.|. +.+.|.+ .|.|+|+|..+..   ...+.|.|..+  .|+|.|.|.|.|..|...
T Consensus         2 ~~~P~~-~~v~~G~~v~l~C~-a~G~P~P~~I~W~k~g~~l~~~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~   74 (81)
T cd05749           2 TVEPED-LSVTANTPFNLTCQ-AVGPPEPVEILWWQGGSPLGDPPAPSPSVLNVPGL--NETSKFSCEAHNAKGVTT   74 (81)
T ss_pred             cCCCCc-eEEcCCCCEEEEEE-eeeecCCeEEEEEECCEECCCCCCCCCCEEEEccc--cCCeEEEEEEEeccCcEE
Confidence            345676 89999999999995 6788888 7999999998754   25568999887  488999999999988654

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.30  E-value=1e-11  Score=80.49  Aligned_cols=64  Identities=28%  Similarity=0.485  Sum_probs=53.9

Q ss_pred             EEEEEEecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542         29 IELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL   93 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   93 (371)
                      +.|.| ...+.|.+.+.|+|++..+...      ....|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 v~l~C-~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLEC-IAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEE-EeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            47999 4567889999999988765432      4468999999999999999999999998888888776

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.29  E-value=1.4e-11  Score=81.07  Aligned_cols=66  Identities=17%  Similarity=0.262  Sum_probs=53.8

Q ss_pred             cCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEE
Q psy14542         26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI   92 (371)
Q Consensus        26 G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~   92 (371)
                      |+++.|.|. ..+.|.+.+.|++++..+...         ....|.|.+++.+|+|.|+|.+.|..|.......+.
T Consensus         1 G~~v~l~C~-~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~   75 (78)
T cd05743           1 GETVEFTCV-ATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI   75 (78)
T ss_pred             CCEEEEEEE-EEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence            789999995 567889999999987765432         346899999999999999999999988776554443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.29  E-value=1.6e-11  Score=80.35  Aligned_cols=64  Identities=27%  Similarity=0.477  Sum_probs=52.5

Q ss_pred             EEEEEEecCCCCCCeeEEEeCCEEE-eeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542         29 IELHCRVSPKRLSSAKAWLKDGLVL-RRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL   93 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~~~~~~-~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   93 (371)
                      +.|.| ...+.|.+.+.|+|++... ...         ....|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 a~l~C-~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLEC-AATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEe-ecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            47899 5678899999999987532 110         3468999999999999999999999998888888876

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.29  E-value=1.2e-11  Score=81.06  Aligned_cols=66  Identities=24%  Similarity=0.534  Sum_probs=52.1

Q ss_pred             EEEEEEeec-CCCCceEEEeCCcccccCC----ceEE----ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEE
Q psy14542        240 VILPCSAQG-NPLPTIKWYKQDSPVEESD----RIQR----IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLF  305 (371)
Q Consensus       240 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~----~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  305 (371)
                      +.|.|.+.+ .|.+.+.|++++..+....    ++..    ..+.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            368999874 6778999999998875432    1221    2357999999999999999999999998877654

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.28  E-value=4.2e-11  Score=81.19  Aligned_cols=76  Identities=25%  Similarity=0.459  Sum_probs=61.7

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccC----CceEEecceEEEeccCCCCCeEEEEEEEcCC-CCceeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEES----DRIQRIGSSLSISHVEESDSGVWNCVANNSE-GQDKMQLFIQY  308 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~~~~~~l~v  308 (371)
                      +..|+.+.|.|.+.+ |.+.+.|++++..+...    .++....+.|.|.++..+|+|.|.|.|.+.. +....++.|.|
T Consensus         8 v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V   86 (89)
T cd04979           8 VVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNV   86 (89)
T ss_pred             EECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEE
Confidence            888999999999876 77899999999876654    3455555679999999999999999998754 45677777777


Q ss_pred             ec
Q psy14542        309 AH  310 (371)
Q Consensus       309 ~~  310 (371)
                      .+
T Consensus        87 ~~   88 (89)
T cd04979          87 LE   88 (89)
T ss_pred             ec
Confidence            53

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.28  E-value=2.7e-11  Score=81.38  Aligned_cols=71  Identities=23%  Similarity=0.417  Sum_probs=59.9

Q ss_pred             eecCCeEEEEEEeec-CCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542        234 VKKDESVILPCSAQG-NPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI  306 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  306 (371)
                      +..|+.++|.|.+.+ .|.+.+.|++++..+...  ....++.|.|.++..+|+|.|.|.|.|..|.....+.|
T Consensus        13 v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l   84 (85)
T cd05754          13 VRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL   84 (85)
T ss_pred             EcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--ccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence            889999999999875 678899999998765432  22346789999999999999999999999998887765

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.27  E-value=3.3e-11  Score=79.39  Aligned_cols=61  Identities=16%  Similarity=0.230  Sum_probs=51.5

Q ss_pred             EEEEecCCCCCCeeEEEeCCEEEeeC----------------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEE
Q psy14542         31 LHCRVSPKRLSSAKAWLKDGLVLRRN----------------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI   92 (371)
Q Consensus        31 l~C~~~~~~~~~~~~W~~~~~~~~~~----------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~   92 (371)
                      |.| ...+.|.+.++|+|||..+...                ..+.|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus         3 i~~-~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           3 IPF-TVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             EEE-EeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            578 4568899999999999887643                134699999999999999999999999988877765

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.26  E-value=3.9e-11  Score=80.98  Aligned_cols=73  Identities=19%  Similarity=0.344  Sum_probs=58.0

Q ss_pred             EEEeccCcEEEEEEecCC----CCCCeeEEEeCCEEEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEE
Q psy14542         21 VVVDVGHRIELHCRVSPK----RLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV   91 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~----~~~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   91 (371)
                      ..+.+|++..|.|.....    +|.+.+.|+|++..+...     ....|.|.+++.+|+|.|+|.+.+..+.....+..
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~   84 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTR   84 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEEE
Confidence            578899999999954432    257789999999887654     45789999999999999999999887776555444


Q ss_pred             EE
Q psy14542         92 IL   93 (371)
Q Consensus        92 ~v   93 (371)
                      .+
T Consensus        85 t~   86 (92)
T cd05757          85 TI   86 (92)
T ss_pred             EE
Confidence            43

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.26  E-value=2.8e-11  Score=82.03  Aligned_cols=68  Identities=29%  Similarity=0.433  Sum_probs=54.4

Q ss_pred             cCcEEEEEEecCCCCCCeeEEEeCC----EEEe-----------e-------CCeeEEEEccCCcCCCeEEEEEEEcCCC
Q psy14542         26 GHRIELHCRVSPKRLSSAKAWLKDG----LVLR-----------R-------NSDEVLVLDRVQREDAGMYQCHVSADDD   83 (371)
Q Consensus        26 G~~v~l~C~~~~~~~~~~~~W~~~~----~~~~-----------~-------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   83 (371)
                      |+.++|.|. ..+.|.|.|+|+|++    ..+.           .       .....|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 G~~v~l~C~-v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd04974           1 GSDVEFHCK-VYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCcEEEEEE-EeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence            788999995 567889999999963    2111           0       0235799999999999999999999999


Q ss_pred             CeEEEEEEEEe
Q psy14542         84 SAQMSAQVILG   94 (371)
Q Consensus        84 ~~~~~~~l~v~   94 (371)
                      ....++.|.|.
T Consensus        80 ~~~~sa~L~V~   90 (90)
T cd04974          80 PSHHSAWLTVL   90 (90)
T ss_pred             cccCCEEEEeC
Confidence            99888888873

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.25  E-value=5.1e-11  Score=78.93  Aligned_cols=64  Identities=27%  Similarity=0.438  Sum_probs=53.0

Q ss_pred             eCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542         16 SPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQCHVSADD   82 (371)
Q Consensus        16 ~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~   82 (371)
                      .|.. ..+.+|+++.|.|.. . .+.+.+.|++||..+...      ....|.|.+++.+|+|.|+|.+....
T Consensus         2 ~P~~-~~v~~G~~v~L~C~~-~-~~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           2 DPRQ-RTFKLGNNAELKCSP-K-SNLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             Ccce-EEEECCCCEEEEEEC-C-CCCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            4566 889999999999964 3 356789999999887643      34679999999999999999998753

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.25  E-value=3.8e-11  Score=78.13  Aligned_cols=64  Identities=17%  Similarity=0.407  Sum_probs=52.4

Q ss_pred             EEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEEEcCCCCe-EEEEEEEE
Q psy14542         29 IELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHVSADDDSA-QMSAQVIL   93 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v   93 (371)
                      ++|.|. ..+.|.+.+.|+|++..+...        ..+.|.|.+++.+|+|.|+|.+.|..|.. +..+.|.|
T Consensus         1 a~l~C~-~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCA-ASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEE-EeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            479994 568899999999998876521        45689999999999999999999998875 56666665

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.24  E-value=6e-11  Score=80.56  Aligned_cols=83  Identities=24%  Similarity=0.442  Sum_probs=60.4

Q ss_pred             CCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCcccee
Q psy14542        111 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSY  190 (371)
Q Consensus       111 g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y  190 (371)
                      |+.+.|.|.+.+.|. +.+.|++++..+.....      . ....         ..++.+..++.|.|.+++.+| +|.|
T Consensus         1 G~~v~L~C~~~g~P~-p~v~W~k~g~~~~~~~~------~-~~~~---------~~r~~v~~~~~L~I~~v~~~D-~G~Y   62 (90)
T cd05726           1 GRTVTFQCEATGNPQ-PAIFWQKEGSQNLLFSY------Q-PPQS---------SSRFSVSQTGDLTITNVQRSD-VGYY   62 (90)
T ss_pred             CCEEEEEEECCccCC-CEEEEEeCCCcceeecc------c-CCCC---------CCeEEECCCCeEEEeeCChhh-CEEE
Confidence            688999999999887 89999998764321100      0 0000         124444445689999999999 9999


Q ss_pred             EEEeeccccceeeeeeccceeeeec
Q psy14542        191 QCRGVNKLTGASLLSVNRGRLSLTE  215 (371)
Q Consensus       191 ~C~~~~~~~~~~~~~~~~~~l~v~~  215 (371)
                      +|.+.|. .|.....+   .|.|..
T Consensus        63 ~C~a~N~-~G~~~~~~---~l~V~~   83 (90)
T cd05726          63 ICQTLNV-AGSILTKA---YLEVTD   83 (90)
T ss_pred             EEEEEcC-CCceEEEE---EEEEee
Confidence            9999999 88777777   788774

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.24  E-value=4.8e-11  Score=78.25  Aligned_cols=62  Identities=23%  Similarity=0.432  Sum_probs=50.6

Q ss_pred             EEEEEEecCCCCCCeeEEEeCCEEEeeC-------------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEE
Q psy14542         29 IELHCRVSPKRLSSAKAWLKDGLVLRRN-------------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQ   90 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   90 (371)
                      +.|.|.+..+.|.+.+.|+++++.+...             ...+|.|.+++.+|+|.|+|.+.|..|....++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            4799976656788899999998877532             2367999999999999999999999887766554

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.23  E-value=2.7e-11  Score=81.42  Aligned_cols=68  Identities=24%  Similarity=0.433  Sum_probs=56.3

Q ss_pred             eCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEe--eC-------CeeEEEEccCCcCCCeEEEEEEEcCCC
Q psy14542         16 SPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR--RN-------SDEVLVLDRVQREDAGMYQCHVSADDD   83 (371)
Q Consensus        16 ~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~--~~-------~~~~l~i~~~~~~d~G~Y~C~~~~~~~   83 (371)
                      .+..+..+.+|+.+.|.|....+.|.+.|.|++++..+.  ..       .++.|.|.+++.+|+|.|+|.|.+...
T Consensus         8 ~~~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~   84 (96)
T cd05727           8 EERDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSS   84 (96)
T ss_pred             CCcCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEeccc
Confidence            344457899999999999888889999999999976431  11       478999999999999999999998653

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.23  E-value=5.2e-11  Score=80.84  Aligned_cols=67  Identities=31%  Similarity=0.466  Sum_probs=53.7

Q ss_pred             cCcEEEEEEecCCCCCCeeEEEeC----CEEEeeC------------------CeeEEEEccCCcCCCeEEEEEEEcCCC
Q psy14542         26 GHRIELHCRVSPKRLSSAKAWLKD----GLVLRRN------------------SDEVLVLDRVQREDAGMYQCHVSADDD   83 (371)
Q Consensus        26 G~~v~l~C~~~~~~~~~~~~W~~~----~~~~~~~------------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~   83 (371)
                      |+.+.|.|.+ .+.|.+.|.|+|+    +..+...                  ....|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 G~~v~L~C~~-~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd05858           1 GSTVEFVCKV-YSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCeEEEEEEE-ecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence            7899999954 5778999999984    3222110                  125799999999999999999999999


Q ss_pred             CeEEEEEEEE
Q psy14542         84 SAQMSAQVIL   93 (371)
Q Consensus        84 ~~~~~~~l~v   93 (371)
                      ....++.|.|
T Consensus        80 ~~~~~a~L~V   89 (90)
T cd05858          80 ISHHSAWLTV   89 (90)
T ss_pred             cccceEEEEE
Confidence            9888888876

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.23  E-value=1.6e-10  Score=79.85  Aligned_cols=79  Identities=15%  Similarity=0.167  Sum_probs=61.2

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCC-eeEEEeCCEEEeeC---------------CeeEEEEccCCcCC-Ce
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSS-AKAWLKDGLVLRRN---------------SDEVLVLDRVQRED-AG   72 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~-~~~W~~~~~~~~~~---------------~~~~l~i~~~~~~d-~G   72 (371)
                      +|.+. .+.. ..+.+|+.+.|.|.+ .+.|.+ .+.|++++..+...               ...+|.|.+++.+| .|
T Consensus         2 pp~i~-~~~~-~~~~~G~~v~L~C~~-~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G   78 (98)
T cd05758           2 PPIIT-SEAT-QYAILGDKGRVECFI-FSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQT   78 (98)
T ss_pred             CCeEc-CCCc-EEEeCCCcEEEEEEE-cccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccce
Confidence            44453 3455 778999999999954 566777 69999998876532               11479999999955 89


Q ss_pred             EEEEEEEcCCCCeEEEEEE
Q psy14542         73 MYQCHVSADDDSAQMSAQV   91 (371)
Q Consensus        73 ~Y~C~~~~~~~~~~~~~~l   91 (371)
                      .|.|.|.|..|.....+.|
T Consensus        79 ~Y~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          79 SYNCTAWNSFGSGTAIISL   97 (98)
T ss_pred             eEEEEEEcCCCcccEEEEe
Confidence            9999999999988777665

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.23  E-value=6.3e-11  Score=77.63  Aligned_cols=62  Identities=26%  Similarity=0.480  Sum_probs=50.6

Q ss_pred             EEEEEEecCCCCCCeeEEEeCCEEEeeC------------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEE
Q psy14542         29 IELHCRVSPKRLSSAKAWLKDGLVLRRN------------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQ   90 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   90 (371)
                      +.|.|.+..+.|.+.+.|+|++..+...            ....|.|.+++.+|+|.|+|.+.|..|....++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            4799966544888999999998877543            2467999999999999999999999988766553

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.23  E-value=1.7e-10  Score=78.30  Aligned_cols=78  Identities=24%  Similarity=0.407  Sum_probs=61.6

Q ss_pred             eeeeeeeecCCeEEEEEEeecCCCCc-eEEEeCCcccccC--CceEE--------ecceEEEeccCCCC-CeEEEEEEEc
Q psy14542        228 KHRILNVKKDESVILPCSAQGNPLPT-IKWYKQDSPVEES--DRIQR--------IGSSLSISHVEESD-SGVWNCVANN  295 (371)
Q Consensus       228 ~~~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~~~~~--~~~~~--------~~~~l~i~~~~~~d-~G~Y~C~a~n  295 (371)
                      ..... +..|+.+.|.|.+.+.|+|. |.|..++..+..+  .++..        ..+.|.|.++...| .|.|.|.|.|
T Consensus         8 ~~s~~-~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N   86 (98)
T cd05898           8 EQVQY-AVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWN   86 (98)
T ss_pred             CceEE-EeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEe
Confidence            33344 88999999999998888875 7998887766543  45542        23579999998766 7999999999


Q ss_pred             CCCCceeEEEE
Q psy14542        296 SEGQDKMQLFI  306 (371)
Q Consensus       296 ~~g~~~~~~~l  306 (371)
                      ..|.+...+.|
T Consensus        87 ~~G~d~~~i~L   97 (98)
T cd05898          87 SFGSGTAIIQL   97 (98)
T ss_pred             CCccceEEEEe
Confidence            99999888776

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.22  E-value=4.3e-11  Score=76.37  Aligned_cols=62  Identities=24%  Similarity=0.340  Sum_probs=48.7

Q ss_pred             EEEEEEecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEE
Q psy14542         29 IELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV   91 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   91 (371)
                      +.|.|. ..+.|.+.+.|+|++..+...      ...+|.|.+++.+|+|.|+|.+.+..........+
T Consensus         1 ~~l~c~-v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i   68 (72)
T cd07702           1 YRLTPK-VKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI   68 (72)
T ss_pred             CeEEee-EEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence            368995 567899999999999886543      44589999999999999999999876554444333

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.22  E-value=1.2e-10  Score=79.16  Aligned_cols=70  Identities=24%  Similarity=0.397  Sum_probs=52.5

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEe---------eC---------CeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR---------RN---------SDEVLVLDRVQREDAGMYQCHVSADD   82 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~---------~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~   82 (371)
                      ..+.+|+++.|.|.+ .+.|.+.+.|++++..+.         ..         ...+|.|.+++.+|+|.|+|.+... 
T Consensus         7 ~tv~~G~tv~L~C~v-~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~-   84 (95)
T cd05882           7 ETVAVGGTVTLKCGV-KEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM-   84 (95)
T ss_pred             EEEecCCcEEEEEEE-eCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee-
Confidence            789999999999954 567788999988664321         01         2579999999999999999999862 


Q ss_pred             CCeEEEEEEE
Q psy14542         83 DSAQMSAQVI   92 (371)
Q Consensus        83 ~~~~~~~~l~   92 (371)
                      ....+...|+
T Consensus        85 ~~~~~~~~~~   94 (95)
T cd05882          85 PVRTAKATVT   94 (95)
T ss_pred             ccccEEEEEE
Confidence            2334444444

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.22  E-value=6.2e-11  Score=78.72  Aligned_cols=70  Identities=24%  Similarity=0.378  Sum_probs=55.6

Q ss_pred             eecCCeEEEEEEeec-CCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEE
Q psy14542        234 VKKDESVILPCSAQG-NPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQ  307 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~  307 (371)
                      +.+|+.++|.|.+.+ .+.+.+.|++++..+...    ..+..|.|.+++.+|+|.|+|.+.+..|.. +..+.|.
T Consensus        11 V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~----~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~   82 (83)
T cd05753          11 VFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS----HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSIT   82 (83)
T ss_pred             ecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc----CCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEE
Confidence            899999999999854 566789999999866432    135679999999999999999999998863 4444443

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.21  E-value=9.5e-11  Score=78.09  Aligned_cols=67  Identities=24%  Similarity=0.402  Sum_probs=53.8

Q ss_pred             cCcEEEEEEecCCCCCCeeEEEeCCE---E--EeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEE
Q psy14542         26 GHRIELHCRVSPKRLSSAKAWLKDGL---V--LRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV   91 (371)
Q Consensus        26 G~~v~l~C~~~~~~~~~~~~W~~~~~---~--~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   91 (371)
                      |+.+.|.| ...+.|.+.+.|+|++.   .  +...         ...+|.|.+++.+|+|.|+|.+.|..|.....+.|
T Consensus         1 G~~v~l~C-~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   79 (81)
T cd05765           1 GETASFHC-DVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPL   79 (81)
T ss_pred             CCcEEEEe-eccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEE
Confidence            78999999 45678899999999631   1  1110         33689999999999999999999999988888877


Q ss_pred             EE
Q psy14542         92 IL   93 (371)
Q Consensus        92 ~v   93 (371)
                      .|
T Consensus        80 ~v   81 (81)
T cd05765          80 SV   81 (81)
T ss_pred             eC
Confidence            65

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.21  E-value=9.2e-11  Score=76.93  Aligned_cols=65  Identities=20%  Similarity=0.425  Sum_probs=54.9

Q ss_pred             EEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542         29 IELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILG   94 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   94 (371)
                      +.|.|. ..+.|.+.+.|+|++..+...         ....|.|.+++.+|.|.|+|.+.|..|.....+.|.|.
T Consensus         1 ~~L~C~-v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCH-AEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeE-eeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            468995 557788999999998876533         33579999999999999999999999999988888875

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.20  E-value=7.5e-11  Score=78.99  Aligned_cols=68  Identities=22%  Similarity=0.367  Sum_probs=54.3

Q ss_pred             cCcEEEEEEecCCC--CCCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEE
Q psy14542         26 GHRIELHCRVSPKR--LSSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSA   89 (371)
Q Consensus        26 G~~v~l~C~~~~~~--~~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   89 (371)
                      |+++.|.|.+. +.  |.+.+.|++++..+...              ..+.|.|.+++.+|+|.|+|.+.|..+....+.
T Consensus         1 Ge~~~L~C~~~-g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~   79 (84)
T cd05742           1 GETLVLNCTVL-TELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKEST   79 (84)
T ss_pred             CCeEEEEEEEE-eCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEE
Confidence            78999999654 44  78899999866433111              346899999999999999999999998888888


Q ss_pred             EEEEe
Q psy14542         90 QVILG   94 (371)
Q Consensus        90 ~l~v~   94 (371)
                      .|.|+
T Consensus        80 ~v~v~   84 (84)
T cd05742          80 KVNIH   84 (84)
T ss_pred             EEEEC
Confidence            77763

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.20  E-value=1.6e-10  Score=77.05  Aligned_cols=68  Identities=19%  Similarity=0.354  Sum_probs=52.9

Q ss_pred             cCcEEEEEEecCCCCCCeeEEEeCCEE----Eee------C---CeeEEEEccCCcCCCeEEEEEEEcCCC--CeEEEEE
Q psy14542         26 GHRIELHCRVSPKRLSSAKAWLKDGLV----LRR------N---SDEVLVLDRVQREDAGMYQCHVSADDD--SAQMSAQ   90 (371)
Q Consensus        26 G~~v~l~C~~~~~~~~~~~~W~~~~~~----~~~------~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~   90 (371)
                      |++++|.|.+ .+.|.+.+.|++.++.    +..      .   ...+|.|.+++.+|+|.|.|.+.+..+  ...+++.
T Consensus         1 Ge~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~   79 (84)
T cd05861           1 GETITVNCIV-QGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN   79 (84)
T ss_pred             CCcEEEEEEE-ECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence            7899999965 4567889999986642    111      0   256899999999999999999998765  5577788


Q ss_pred             EEEe
Q psy14542         91 VILG   94 (371)
Q Consensus        91 l~v~   94 (371)
                      |+|.
T Consensus        80 i~V~   83 (84)
T cd05861          80 ITVH   83 (84)
T ss_pred             EEEe
Confidence            8775

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.19  E-value=1.2e-10  Score=73.31  Aligned_cols=63  Identities=46%  Similarity=0.883  Sum_probs=52.3

Q ss_pred             cCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542        236 KDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEG  298 (371)
Q Consensus       236 ~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  298 (371)
                      +|+.+.|.|.+.+.+.+.+.|++++..+............|.|.++..+|+|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            478899999988888899999999887773333334556899999999999999999998765

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.19  E-value=2.6e-10  Score=77.87  Aligned_cols=74  Identities=23%  Similarity=0.372  Sum_probs=55.9

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeC--------CcccccCCceEE-----ecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQ--------DSPVEESDRIQR-----IGSSLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~--------~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      +.+|+++.|.|.+.+.|.+.+.|++.        +.......|+..     ...+|.|.++..+|+|.|+|.+.+..+ .
T Consensus         9 v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~-~   87 (95)
T cd07701           9 VVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMPV-K   87 (95)
T ss_pred             EecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeecC-c
Confidence            89999999999999999999999853        222223445442     235799999999999999999998533 3


Q ss_pred             eeEEEEEE
Q psy14542        301 KMQLFIQY  308 (371)
Q Consensus       301 ~~~~~l~v  308 (371)
                      +.+..|.|
T Consensus        88 ~~~~~l~v   95 (95)
T cd07701          88 TSKAYLTV   95 (95)
T ss_pred             cEEEEEEC
Confidence            66666654

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.18  E-value=1.6e-10  Score=78.34  Aligned_cols=72  Identities=24%  Similarity=0.411  Sum_probs=56.7

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCC-CCeEEEEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADD-DSAQMSAQ   90 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~~   90 (371)
                      +.+.+|+++.|.|.. .+ |.+.+.|++++..+...         ....|.|.+++.+|+|.|.|.+.+.. +....++.
T Consensus         6 ~~v~~g~~v~L~C~~-~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~   83 (89)
T cd04979           6 VTVVEGNSVFLECSP-KS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYS   83 (89)
T ss_pred             EEEECCCcEEEEEeC-CC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEEE
Confidence            788999999999964 34 67789999987655321         33569999999999999999998654 44567788


Q ss_pred             EEEe
Q psy14542         91 VILG   94 (371)
Q Consensus        91 l~v~   94 (371)
                      |.|.
T Consensus        84 l~V~   87 (89)
T cd04979          84 LNVL   87 (89)
T ss_pred             EEEe
Confidence            8775

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.18  E-value=3.2e-10  Score=76.60  Aligned_cols=76  Identities=24%  Similarity=0.438  Sum_probs=59.7

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCc--c----cccCCceEEecceEEEeccCCCCCeEEEEEEE-cCCCCceeEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDS--P----VEESDRIQRIGSSLSISHVEESDSGVWNCVAN-NSEGQDKMQLFI  306 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~--~----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~-n~~g~~~~~~~l  306 (371)
                      +.+|+.+.|.|.. +.|.+.+.|++.+.  .    +....++...++.|.|.++..+|+|.|+|.|. |..+.....+.|
T Consensus         8 ~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l   86 (91)
T cd05871           8 GVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTL   86 (91)
T ss_pred             EecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEEEEE
Confidence            7889999999996 47889999998432  2    12335566667789999999999999999998 566767777888


Q ss_pred             EEec
Q psy14542        307 QYAH  310 (371)
Q Consensus       307 ~v~~  310 (371)
                      .|..
T Consensus        87 ~v~~   90 (91)
T cd05871          87 HVIE   90 (91)
T ss_pred             EEec
Confidence            7754

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.16  E-value=3.9e-10  Score=76.63  Aligned_cols=62  Identities=26%  Similarity=0.431  Sum_probs=50.5

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCccc--------ccCCceEE-----ecceEEEeccCCCCCeEEEEEEEc
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPV--------EESDRIQR-----IGSSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      +..|+++.|.|.+.+.|.+.+.|+++++.+        ....++..     ....|.|.++..+|+|.|+|.+..
T Consensus         9 v~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882           9 VAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             EecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            899999999999999999999999887632        11233332     135899999999999999999987

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.16  E-value=4.6e-10  Score=75.60  Aligned_cols=72  Identities=26%  Similarity=0.477  Sum_probs=58.5

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQ   90 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   90 (371)
                      +.+.+|+++.|.|.+ .+.|.+.+.|++++..+...          ....|.|.+++.+|+|.|.|.+.+..|....++.
T Consensus         4 ~~~~~G~~~~l~C~~-~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~   82 (85)
T cd05729           4 HAVPAGSTVRLKCPA-SGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYK   82 (85)
T ss_pred             eEecCCCcEEEEEEc-CCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEE
Confidence            457789999999954 56788899999998776422          3357999999999999999999998888777777


Q ss_pred             EEE
Q psy14542         91 VIL   93 (371)
Q Consensus        91 l~v   93 (371)
                      |.|
T Consensus        83 l~v   85 (85)
T cd05729          83 VDV   85 (85)
T ss_pred             EeC
Confidence            653

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.15  E-value=2.5e-10  Score=76.37  Aligned_cols=74  Identities=22%  Similarity=0.368  Sum_probs=56.6

Q ss_pred             CCeEEEEEEeecCCC--CceEEEeCCcccccC---C--ce-----EEecceEEEeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542        237 DESVILPCSAQGNPL--PTIKWYKQDSPVEES---D--RI-----QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL  304 (371)
Q Consensus       237 g~~~~l~C~~~~~p~--~~v~W~~~~~~~~~~---~--~~-----~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  304 (371)
                      |+++.|.|.+.+.+.  ..+.|.+++......   .  +.     ....++|.|.++..+|+|.|+|.|.|..|......
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            678999999987654  578999877643211   1  11     12346899999999999999999999999888888


Q ss_pred             EEEEec
Q psy14542        305 FIQYAH  310 (371)
Q Consensus       305 ~l~v~~  310 (371)
                      .|.|.+
T Consensus        81 ~~~V~~   86 (86)
T cd05862          81 IVIVHE   86 (86)
T ss_pred             EEEEeC
Confidence            888763

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.15  E-value=4.5e-10  Score=74.68  Aligned_cols=78  Identities=27%  Similarity=0.504  Sum_probs=59.3

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCC-CeEEEE
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDD-SAQMSA   89 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~   89 (371)
                      |.|...+   ..+.+|++++|.|.+. +.|...+.|++++..+....+. +.+.+++.+|+|.|+|.+.+..+ ..+..+
T Consensus         2 P~l~~~~---~~v~~g~~~~l~C~~~-~~p~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~   76 (80)
T PF13895_consen    2 PVLSSSP---QSVEEGDSVTLTCSVS-GNPPPQVQWYKNGSPINSSQNG-LFIPNVSPEDSGNYTCRASNGSGSNTSTSV   76 (80)
T ss_dssp             -EEEEES---SEEETTSEEEEEEEEE-SSSSSEEEEEETTEEEEEESSE-EEESSEEGGGTEEEEEEEEETTEEEEEEEE
T ss_pred             cEEEccc---eEEeCCCcEEEEEEEE-cccceeeeeeeeeeeeeeeeee-eeeeeeccccCEEEEEEEEeCCCCeEeeeE
Confidence            5566555   3589999999999655 7777899999999988864333 88899999999999999998554 234555


Q ss_pred             EEEE
Q psy14542         90 QVIL   93 (371)
Q Consensus        90 ~l~v   93 (371)
                      .|.|
T Consensus        77 ~v~V   80 (80)
T PF13895_consen   77 NVTV   80 (80)
T ss_dssp             EEEE
T ss_pred             EeeC
Confidence            5554

...

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.14  E-value=9.2e-10  Score=74.69  Aligned_cols=80  Identities=19%  Similarity=0.211  Sum_probs=60.7

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------------CeeEEEEccCCcCC-CeE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------------SDEVLVLDRVQRED-AGM   73 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------------~~~~l~i~~~~~~d-~G~   73 (371)
                      +|.| ..... ..+.+|+.+.|.|.+....++..|.|.+++..+...               ..+.|.|.++...| .|.
T Consensus         2 pP~i-~~~~s-~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~   79 (98)
T cd05898           2 PPII-SSEQV-QYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTH   79 (98)
T ss_pred             CCEE-ecCce-EEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcE
Confidence            4555 33444 789999999999966555445568888876655332               45789999998877 799


Q ss_pred             EEEEEEcCCCCeEEEEEE
Q psy14542         74 YQCHVSADDDSAQMSAQV   91 (371)
Q Consensus        74 Y~C~~~~~~~~~~~~~~l   91 (371)
                      |.|.|.|..|.+...+.|
T Consensus        80 Y~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          80 YNCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEEeCCccceEEEEe
Confidence            999999999999877766

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.13  E-value=3.8e-10  Score=75.00  Aligned_cols=69  Identities=38%  Similarity=0.748  Sum_probs=55.8

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCC-CceeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEG-QDKMQLFIQY  308 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~v  308 (371)
                      +..|+.+.|.|.+.+.|.+.+.|++++..+....      ..+.+..+..+|+|.|+|.+.+..+ ..+.++.|.|
T Consensus        11 v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~------~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen   11 VEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ------NGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             EETTSEEEEEEEEESSSSSEEEEEETTEEEEEES------SEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee------eeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence            8899999999999998889999999887666332      2377888999999999999999654 4556666654

...

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=99.12  E-value=4.3e-10  Score=76.32  Aligned_cols=69  Identities=22%  Similarity=0.394  Sum_probs=55.9

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee------CCeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR------NSDEVLVLDRVQREDAGMYQCHVSAD   81 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~------~~~~~l~i~~~~~~d~G~Y~C~~~~~   81 (371)
                      ++|.|.+.|..  .|.+|++|+|.|..  ..+...+.|+|+|.....      .....|.|.+++.+|+|.|+|.+.+.
T Consensus         1 pkP~L~a~p~~--vV~~G~~VtL~C~~--~~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751           1 PKPSLWAEPSS--VVPLGKPVTLRCQG--PYGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CCCEEEecCCC--ccCCCCcEEEEEec--CCCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            46888888875  78999999999953  356678999998775332      15678999999999999999999875

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.12  E-value=5.4e-10  Score=76.03  Aligned_cols=74  Identities=23%  Similarity=0.408  Sum_probs=55.3

Q ss_pred             ceEEEeCCCcEEEec---cCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCc-CCCeEEEEEEE
Q psy14542         11 LSIEMSPSGQVVVDV---GHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQR-EDAGMYQCHVS   79 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~---G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~-~d~G~Y~C~~~   79 (371)
                      |.+.-.|.. ..+.+   |+.+.|.|.+ .+.|.+.++|++++..+...       ....|.|.++.. +|+|.|+|.+.
T Consensus         2 P~f~~~p~~-~~~~~~~~~~~~~l~C~~-~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~   79 (91)
T cd04967           2 PVFEEQPDD-TIFPEESDEGKVSLNCRA-RGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLAS   79 (91)
T ss_pred             CeeEeCCCC-EEccCCCCCCEEEEEEee-eEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEE
Confidence            445555665 54444   4579999954 56788999999999887422       346788988874 89999999999


Q ss_pred             cCCCCeE
Q psy14542         80 ADDDSAQ   86 (371)
Q Consensus        80 ~~~~~~~   86 (371)
                      |..|...
T Consensus        80 N~~G~~~   86 (91)
T cd04967          80 NIVGTVL   86 (91)
T ss_pred             cCCCEEE
Confidence            9888643

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.10  E-value=4.1e-10  Score=75.73  Aligned_cols=67  Identities=27%  Similarity=0.487  Sum_probs=54.5

Q ss_pred             eecCCeEEEEEEe-ecCCCCceEEEeCCccc--ccCC-ceEE-ecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        234 VKKDESVILPCSA-QGNPLPTIKWYKQDSPV--EESD-RIQR-IGSSLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       234 ~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~--~~~~-~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      +.+|+.+.|.|.. .|.|.+.+.|++++.++  .... ++.. .++.|.|.++..+|+|+|+|.|.|.....
T Consensus        15 v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          15 VKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             eeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            8889999999975 57899999999998754  2233 3333 36899999999999999999999987554

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.10  E-value=4.2e-10  Score=73.74  Aligned_cols=57  Identities=23%  Similarity=0.459  Sum_probs=46.0

Q ss_pred             EEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCc----CCCeEEEEEEEcCCCCeE
Q psy14542         29 IELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQR----EDAGMYQCHVSADDDSAQ   86 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~   86 (371)
                      ++|.| ...+.|.+.++|+|++..+...         ..+.|.|.++..    +|+|.|+|.|.|..|...
T Consensus         1 i~l~C-~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05733           1 IVIKC-EAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI   70 (77)
T ss_pred             CEEEe-eCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence            47999 4568899999999999876432         457899988754    789999999999988653

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.08  E-value=2e-09  Score=72.36  Aligned_cols=76  Identities=16%  Similarity=0.361  Sum_probs=64.6

Q ss_pred             eecCCeEEEEEEeecCCCCc-eEEEeCCcccccCCc--eE-------EecceEEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542        234 VKKDESVILPCSAQGNPLPT-IKWYKQDSPVEESDR--IQ-------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ  303 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~~~~~~~--~~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  303 (371)
                      +..|+.+.|.|.+.++|+|. +.|.+++..+.....  +.       ...+.|.+..+..+|+|.|+|.|.|..+..+.+
T Consensus        15 v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~t   94 (101)
T cd05860          15 VNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASASVT   94 (101)
T ss_pred             EECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEEEE
Confidence            89999999999999999998 999998876543322  11       133679999999999999999999999999999


Q ss_pred             EEEEEe
Q psy14542        304 LFIQYA  309 (371)
Q Consensus       304 ~~l~v~  309 (371)
                      +.|.|.
T Consensus        95 F~l~v~  100 (101)
T cd05860          95 FNVYVN  100 (101)
T ss_pred             EEEEEe
Confidence            999875

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.08  E-value=9.1e-10  Score=75.18  Aligned_cols=74  Identities=22%  Similarity=0.350  Sum_probs=52.7

Q ss_pred             CCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC---------------EE-Eee--CCeeEEEEccCCcCCCeEEEEEE
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG---------------LV-LRR--NSDEVLVLDRVQREDAGMYQCHV   78 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~---------------~~-~~~--~~~~~l~i~~~~~~d~G~Y~C~~   78 (371)
                      ++. +.+.+|++++|.|.+ .+.|.+.+.|++.+               +. ...  ....+|.|.+++.+|+|.|.|.+
T Consensus         4 ~~~-v~v~eG~~v~L~C~~-~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~   81 (95)
T cd07701           4 TQN-VTVVEGGTANLTCRV-DQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSL   81 (95)
T ss_pred             cce-EEEecCCcEEEEEEE-ecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEe
Confidence            344 789999999999955 56678889998521               11 100  04478999999999999999999


Q ss_pred             EcCCCCeEEEEEEEE
Q psy14542         79 SADDDSAQMSAQVIL   93 (371)
Q Consensus        79 ~~~~~~~~~~~~l~v   93 (371)
                      .... .......|.|
T Consensus        82 ~t~~-~~~~~~~l~v   95 (95)
T cd07701          82 FTMP-VKTSKAYLTV   95 (95)
T ss_pred             Eeec-CccEEEEEEC
Confidence            8743 3355555543

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.07  E-value=1.2e-09  Score=70.69  Aligned_cols=61  Identities=16%  Similarity=0.432  Sum_probs=49.0

Q ss_pred             EEEEEEee-cCCCCceEEEeCCcccccCC------ceEEecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        240 VILPCSAQ-GNPLPTIKWYKQDSPVEESD------RIQRIGSSLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       240 ~~l~C~~~-~~p~~~v~W~~~~~~~~~~~------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      +.|+|... ++|++.|+|+++++++....      +.....++|.|.....+|++.|+|+|.|..+..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            68999976 58999999999999886432      111234579999999999999999999998764

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>PHA03376 BARF1; Provisional

Probab=99.07  E-value=1.7e-08  Score=74.43  Aligned_cols=135  Identities=18%  Similarity=0.289  Sum_probs=77.4

Q ss_pred             eeecCCcEEEEEEecCC--CCCceEEEeeCC----EE-eeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEE
Q psy14542        107 VVDVGHRIELHCRVSPK--RLSSAKAWLKDG----LV-LRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIH  179 (371)
Q Consensus       107 ~~~~g~~v~l~C~~~~~--~~~~~v~W~~~~----~~-~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~  179 (371)
                      ....|+.+.|.|.....  .....|.|+|.+    .. +....... ..  .+-+..|.+.....+      .+.+|.|.
T Consensus        22 ta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdV-v~--~QmEyRGrtD~~~~~------gnvsLvI~   92 (221)
T PHA03376         22 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDV-IF--IEWPFRGFFDIHRSA------NTFFLVVT   92 (221)
T ss_pred             hheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCee-ee--eeeccccEEEEEecC------CeEEEEEE
Confidence            34789999999987521  223789999943    21 22221111 11  111333333221112      34689999


Q ss_pred             EeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeC
Q psy14542        180 QVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQ  259 (371)
Q Consensus       180 ~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~  259 (371)
                      +++.+| .|.|+|.+.....+..+ ..   .+.+.     .+-.+........ ...-+...+.|.+.|+|.|.++|..+
T Consensus        93 ~l~lSD-dGtY~C~fQkge~~~~k-~e---hLt~V-----~~~~Lsv~a~~~d-Fp~~~~~~i~C~sggfP~P~~~Wle~  161 (221)
T PHA03376         93 AANISH-DGNYLCRMKLGETEVTK-QE---HLSVV-----KPLTLSVHSERSQ-FPDFSVLTVTCTVNAFPHPHVQWLMP  161 (221)
T ss_pred             eeeecC-CceEEEEEEcCCCceee-ee---eeeee-----ecceEEEEecccc-CCCCCeeEEEEecCCcCCchheeccc
Confidence            999999 99999999876333322 22   33333     1111221111111 22245578999988899999999976


Q ss_pred             Cc
Q psy14542        260 DS  261 (371)
Q Consensus       260 ~~  261 (371)
                      .+
T Consensus       162 ~~  163 (221)
T PHA03376        162 EG  163 (221)
T ss_pred             cC
Confidence            55

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.07  E-value=5.9e-10  Score=73.64  Aligned_cols=64  Identities=23%  Similarity=0.359  Sum_probs=48.8

Q ss_pred             EEEEEEecCCCCCCeeEEEeCCEEE-e--------e-----CCeeEEEEccCCcCCCeEEEEEEEcCCCCe-EEEEEEEE
Q psy14542         29 IELHCRVSPKRLSSAKAWLKDGLVL-R--------R-----NSDEVLVLDRVQREDAGMYQCHVSADDDSA-QMSAQVIL   93 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~~~~~~-~--------~-----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v   93 (371)
                      ++|.| ...+.|.+.+.|++++... .        .     ...++|.|.+++.+|+|.|.|.|.|..|.. +..+.|.|
T Consensus         1 v~l~C-~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~   79 (79)
T cd05734           1 VTLNC-SAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV   79 (79)
T ss_pred             CEeEe-eCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence            57999 4568899999999963211 0        0     145789999999999999999999998876 55565543

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.07  E-value=7e-10  Score=74.42  Aligned_cols=67  Identities=27%  Similarity=0.472  Sum_probs=55.6

Q ss_pred             eecCCeEEEEEE-eecCCCCceEEEeCCcc-cccCCceEE-ecceEEEeccCCCCCe-EEEEEEEcCCCCc
Q psy14542        234 VKKDESVILPCS-AQGNPLPTIKWYKQDSP-VEESDRIQR-IGSSLSISHVEESDSG-VWNCVANNSEGQD  300 (371)
Q Consensus       234 ~~~g~~~~l~C~-~~~~p~~~v~W~~~~~~-~~~~~~~~~-~~~~l~i~~~~~~d~G-~Y~C~a~n~~g~~  300 (371)
                      +.+|+.+.|.|. ..|.|.|.|.|+.++.. +....|+.. .++.|.|.++..+|+| .|.|.|.|.....
T Consensus        15 V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~   85 (95)
T cd05845          15 VEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLRT   85 (95)
T ss_pred             EecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccccc
Confidence            899999999997 68999999999987654 444555554 5689999999999999 8999999876443

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.06  E-value=1.2e-09  Score=71.44  Aligned_cols=58  Identities=21%  Similarity=0.476  Sum_probs=45.5

Q ss_pred             EEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcC----CCeEEEEEEEcCCCCeEE
Q psy14542         29 IELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQRE----DAGMYQCHVSADDDSAQM   87 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~----d~G~Y~C~~~~~~~~~~~   87 (371)
                      +.|.| ...+.|.++++|+|++..+...         ..++|.|..+..+    |+|.|+|.|.|..|....
T Consensus         1 ~~l~C-~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQC-EAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEe-eCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            47999 4577899999999998876321         4578888877653    789999999998887543

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.06  E-value=1.4e-09  Score=71.11  Aligned_cols=57  Identities=21%  Similarity=0.391  Sum_probs=44.7

Q ss_pred             EEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCC----cCCCeEEEEEEEcCCCCeE
Q psy14542         29 IELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQ----REDAGMYQCHVSADDDSAQ   86 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~----~~d~G~Y~C~~~~~~~~~~   86 (371)
                      +.|.| ...+.|.+.++|+|++..+...         ..++|.|..+.    .+|+|.|+|.|.|..|...
T Consensus         1 ~~l~C-~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05875           1 IIIEC-EAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL   70 (77)
T ss_pred             CEEEE-eccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence            47999 5568899999999999865321         46789998764    2469999999999988653

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.06  E-value=4.9e-10  Score=75.18  Aligned_cols=67  Identities=19%  Similarity=0.357  Sum_probs=54.3

Q ss_pred             eCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCcCCCe-EEEEEEEcCC
Q psy14542         16 SPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAG-MYQCHVSADD   82 (371)
Q Consensus        16 ~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~G-~Y~C~~~~~~   82 (371)
                      ....++.+.+|+.+.|.|....+.|.+.|.|++++......       .++.|.|.+++.+|+| .|.|.|.+..
T Consensus         8 ~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~   82 (95)
T cd05845           8 EKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPG   82 (95)
T ss_pred             cccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccc
Confidence            33334889999999999976788999999999865332111       5689999999999999 8999999764

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=99.05  E-value=9e-10  Score=74.24  Aligned_cols=73  Identities=14%  Similarity=0.315  Sum_probs=54.9

Q ss_pred             EEEeccCcEEEEEEecC----------CCCCCeeEEEeCCEEEeeC------------CeeEEEEccCCcCCCeEEEEEE
Q psy14542         21 VVVDVGHRIELHCRVSP----------KRLSSAKAWLKDGLVLRRN------------SDEVLVLDRVQREDAGMYQCHV   78 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~----------~~~~~~~~W~~~~~~~~~~------------~~~~l~i~~~~~~d~G~Y~C~~   78 (371)
                      ..+.+|+++.|.|....          ......+.|+|++..+...            ....|.|.++..+|+|.|+|++
T Consensus        10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~   89 (104)
T cd05896          10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVL   89 (104)
T ss_pred             EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEE
Confidence            67899999999995421          2223479999985332221            4668999999999999999999


Q ss_pred             EcCCCCeEEEEEEEE
Q psy14542         79 SADDDSAQMSAQVIL   93 (371)
Q Consensus        79 ~~~~~~~~~~~~l~v   93 (371)
                      .|........+.|+|
T Consensus        90 rN~t~C~~~~i~l~V  104 (104)
T cd05896          90 RNSTYCMKVSMSLTV  104 (104)
T ss_pred             CCCCcceEEEEEEEC
Confidence            998777776666654

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=99.05  E-value=2e-09  Score=72.57  Aligned_cols=75  Identities=27%  Similarity=0.388  Sum_probs=59.7

Q ss_pred             eecCCeEEEEEEee-----------cCCCCceEEEeCCcccccC-------CceEEecceEEEeccCCCCCeEEEEEEEc
Q psy14542        234 VKKDESVILPCSAQ-----------GNPLPTIKWYKQDSPVEES-------DRIQRIGSSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       234 ~~~g~~~~l~C~~~-----------~~p~~~v~W~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      +.+|+.+.|.|...           .....++.|+|++..+...       .|+...+..|.|.++..+|+|.|+|++.|
T Consensus        12 ~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN   91 (104)
T cd05896          12 VLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLRN   91 (104)
T ss_pred             EcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEECC
Confidence            88999999999961           1223479999997544332       36677888999999999999999999999


Q ss_pred             CCCCceeEEEEEE
Q psy14542        296 SEGQDKMQLFIQY  308 (371)
Q Consensus       296 ~~g~~~~~~~l~v  308 (371)
                      .......++.|.|
T Consensus        92 ~t~C~~~~i~l~V  104 (104)
T cd05896          92 STYCMKVSMSLTV  104 (104)
T ss_pred             CCcceEEEEEEEC
Confidence            9888777777654

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.05  E-value=1.1e-09  Score=73.85  Aligned_cols=75  Identities=17%  Similarity=0.309  Sum_probs=56.5

Q ss_pred             eecCCeEEEEEEe-ec----CCCCceEEEeCCcccccCC-ceEE--ecceEEEeccCCCCCeEEEEEEEcCCCCc----e
Q psy14542        234 VKKDESVILPCSA-QG----NPLPTIKWYKQDSPVEESD-RIQR--IGSSLSISHVEESDSGVWNCVANNSEGQD----K  301 (371)
Q Consensus       234 ~~~g~~~~l~C~~-~~----~p~~~v~W~~~~~~~~~~~-~~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~----~  301 (371)
                      +..|.+..|+|.- .+    ++.+.++|+|++.++.... ++..  ....|.|.++..+|+|.|+|+|.+..|..    +
T Consensus         7 ~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~vt   86 (95)
T cd05897           7 LFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYNIT   86 (95)
T ss_pred             eccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEEEEE
Confidence            6788899999973 33    3567899999999887543 2222  34579999999999999999999987654    4


Q ss_pred             eEEEEEE
Q psy14542        302 MQLFIQY  308 (371)
Q Consensus       302 ~~~~l~v  308 (371)
                      +++.|.|
T Consensus        87 r~~~l~v   93 (95)
T cd05897          87 RIIKLRI   93 (95)
T ss_pred             EEEEEEE
Confidence            4454544

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>PHA03376 BARF1; Provisional

Probab=99.04  E-value=4.6e-09  Score=77.37  Aligned_cols=115  Identities=16%  Similarity=0.206  Sum_probs=74.9

Q ss_pred             cEEEeccCcEEEEEEecC--CCCCCeeEEEeCC----EEEee-C---------------------CeeEEEEccCCcCCC
Q psy14542         20 QVVVDVGHRIELHCRVSP--KRLSSAKAWLKDG----LVLRR-N---------------------SDEVLVLDRVQREDA   71 (371)
Q Consensus        20 ~~~~~~G~~v~l~C~~~~--~~~~~~~~W~~~~----~~~~~-~---------------------~~~~l~i~~~~~~d~   71 (371)
                      ++.+..|+.+.|+|....  ..+...|.|+|.+    ..+.. .                     ++.+|.|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            478899999999996552  2245569999942    21111 0                     667899999999999


Q ss_pred             eEEEEEEEcCCCCeEEEEEEEEecceeeEecCCceee-ecCCcEEEEEEecCCCCCceEEEeeCCE
Q psy14542         72 GMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVV-DVGHRIELHCRVSPKRLSSAKAWLKDGL  136 (371)
Q Consensus        72 G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~-~~g~~v~l~C~~~~~~~~~~v~W~~~~~  136 (371)
                      |.|+|.+........+.-.|++. .|..+........ ..-+...+.|.+.++|. +.+.|..+..
T Consensus       100 GtY~C~fQkge~~~~k~ehLt~V-~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~-P~~~Wle~~~  163 (221)
T PHA03376        100 GNYLCRMKLGETEVTKQEHLSVV-KPLTLSVHSERSQFPDFSVLTVTCTVNAFPH-PHVQWLMPEG  163 (221)
T ss_pred             ceEEEEEEcCCCceeeeeeeeee-ecceEEEEeccccCCCCCeeEEEEecCCcCC-chheeccccC
Confidence            99999999765444333333333 2222222111111 22566789999777787 9999987543

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.03  E-value=1.1e-09  Score=69.14  Aligned_cols=57  Identities=37%  Similarity=0.661  Sum_probs=45.7

Q ss_pred             CCeEEEEEEe-ecCCCCceEEEeCCcccccCCceEE--ecc----eEEEeccCCCCCeEEEEEE
Q psy14542        237 DESVILPCSA-QGNPLPTIKWYKQDSPVEESDRIQR--IGS----SLSISHVEESDSGVWNCVA  293 (371)
Q Consensus       237 g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~--~~~----~l~i~~~~~~d~G~Y~C~a  293 (371)
                      |+.++|.|.+ .+.+...+.|++++...........  ...    .|.|.++..+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7889999999 6677889999999987765543332  112    2999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.02  E-value=2.5e-09  Score=72.24  Aligned_cols=72  Identities=21%  Similarity=0.284  Sum_probs=54.0

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCC--EE----EeeC-----CeeEEEEccCCcCCCeEEEEEEE-cCCCCeEEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDG--LV----LRRN-----SDEVLVLDRVQREDAGMYQCHVS-ADDDSAQMS   88 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~--~~----~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~   88 (371)
                      +.+.+|+++.|.|..  ..|.+.+.||+.+  ..    +...     ..+.|.|.+++.+|+|.|+|.+. +..+.....
T Consensus         6 ~~~~eG~~v~L~C~~--~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~   83 (91)
T cd05871           6 VYGVENNSTFLECLP--KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAK   83 (91)
T ss_pred             EEEecCCcEEEEEEC--CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEE
Confidence            568899999999963  3678899999832  11    1111     44679999999999999999998 455556667


Q ss_pred             EEEEEe
Q psy14542         89 AQVILG   94 (371)
Q Consensus        89 ~~l~v~   94 (371)
                      +.|.|.
T Consensus        84 ~~l~v~   89 (91)
T cd05871          84 YTLHVI   89 (91)
T ss_pred             EEEEEe
Confidence            777775

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.99  E-value=2.6e-09  Score=72.13  Aligned_cols=62  Identities=21%  Similarity=0.405  Sum_probs=47.7

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEE-e-------------------------eCCeeEEEEccCCcCCCeEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL-R-------------------------RNSDEVLVLDRVQREDAGMY   74 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~-~-------------------------~~~~~~l~i~~~~~~d~G~Y   74 (371)
                      +.+.+|++|+|+|.. .+.+.+.+.|+++++.. .                         .....+|.|.+++.+|+|.|
T Consensus         2 v~~~~G~~VtL~C~~-s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY   80 (94)
T cd07690           2 VLGKKGDTAELPCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTY   80 (94)
T ss_pred             eEeeCCCCEEEEEEe-CCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEE
Confidence            568899999999954 45678889999765322 0                         00346799999999999999


Q ss_pred             EEEEEcCCC
Q psy14542         75 QCHVSADDD   83 (371)
Q Consensus        75 ~C~~~~~~~   83 (371)
                      .|.+.+..+
T Consensus        81 ~C~v~~~~~   89 (94)
T cd07690          81 ICEVEDKKE   89 (94)
T ss_pred             EEEECCccc
Confidence            999987544

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.98  E-value=3.2e-09  Score=71.02  Aligned_cols=69  Identities=25%  Similarity=0.405  Sum_probs=53.1

Q ss_pred             cCcEEEEEEecC-CCCCCeeEEEeCCEEEee----C-----------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEE
Q psy14542         26 GHRIELHCRVSP-KRLSSAKAWLKDGLVLRR----N-----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSA   89 (371)
Q Consensus        26 G~~v~l~C~~~~-~~~~~~~~W~~~~~~~~~----~-----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   89 (371)
                      |+++.|.|.+.. ..+...+.|.+.++....    .           ..+.|.|.+++.+|+|.|+|.+.|..+......
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            789999997653 245667899886643211    0           356899999999999999999999887777777


Q ss_pred             EEEEe
Q psy14542         90 QVILG   94 (371)
Q Consensus        90 ~l~v~   94 (371)
                      .|.|.
T Consensus        81 ~~~V~   85 (86)
T cd05862          81 IVIVH   85 (86)
T ss_pred             EEEEe
Confidence            77775

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>smart00410 IG_like Immunoglobulin like

Probab=98.98  E-value=1.3e-08  Score=68.46  Aligned_cols=75  Identities=40%  Similarity=0.686  Sum_probs=61.5

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeC-CcccccCCceEEe----cceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQ-DSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      +..|+.+.|.|.+.+.+.+.+.|+++ +..+....++...    ...|.|.++..+|+|.|.|.+.+..+.....+.|.|
T Consensus         6 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V   85 (86)
T smart00410        6 VKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV   85 (86)
T ss_pred             EeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence            78899999999999887889999998 7766544444422    257999999999999999999998888777777765

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=98.98  E-value=1.3e-08  Score=68.46  Aligned_cols=75  Identities=40%  Similarity=0.686  Sum_probs=61.5

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeC-CcccccCCceEEe----cceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQ-DSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      +..|+.+.|.|.+.+.+.+.+.|+++ +..+....++...    ...|.|.++..+|+|.|.|.+.+..+.....+.|.|
T Consensus         6 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V   85 (86)
T smart00409        6 VKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV   85 (86)
T ss_pred             EeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence            78899999999999887889999998 7766544444422    257999999999999999999998888777777765

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.97  E-value=4.2e-09  Score=68.21  Aligned_cols=56  Identities=16%  Similarity=0.354  Sum_probs=47.8

Q ss_pred             EEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542         29 IELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQCHVSADDDS   84 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   84 (371)
                      ++|.|....+.|.+.|.||||++++...           ..+.|.|.....+|.+.|+|.|.|..+.
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~   68 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV   68 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence            7899988889999999999999988543           2346999999999999999999987754

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.97  E-value=7.5e-09  Score=68.05  Aligned_cols=65  Identities=25%  Similarity=0.454  Sum_probs=55.2

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      +..|+++.|.|...+. .+.+.|++++..+..+.++.....-|.|..+..+|+|.|.|.+. +.|..
T Consensus         8 v~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~-E~gf~   72 (85)
T cd05872           8 VAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSE-EEGFQ   72 (85)
T ss_pred             EecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEe-cCCCe
Confidence            8899999999998754 66999999999998877777777778899999999999999987 33443

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.97  E-value=1.9e-09  Score=72.66  Aligned_cols=65  Identities=20%  Similarity=0.397  Sum_probs=51.6

Q ss_pred             EEEeccCcEEEEEEecC----CCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542         21 VVVDVGHRIELHCRVSP----KRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHVSADDDSA   85 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~----~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   85 (371)
                      ..+.+|.+..|.|....    ..+.+.+.||||+..+...        ....|.|.+++.+|+|.|+|.+.+..+..
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~   81 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGK   81 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence            46788999999995322    3456789999999887532        33579999999999999999999876544

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.96  E-value=9.4e-09  Score=70.58  Aligned_cols=74  Identities=23%  Similarity=0.364  Sum_probs=54.1

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCccc--------ccCCceEE-----ecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPV--------EESDRIQR-----IGSSLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      +.+|+++.|.|.+.+.+.+.+.|++.+..+        ....++..     ....|.|.+++.+|+|.|.|.+.+... .
T Consensus         9 v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~-~   87 (95)
T cd05717           9 VVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMPV-Q   87 (95)
T ss_pred             EcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCCC-c
Confidence            889999999999988888899998533211        12234443     234799999999999999999997653 3


Q ss_pred             eeEEEEEE
Q psy14542        301 KMQLFIQY  308 (371)
Q Consensus       301 ~~~~~l~v  308 (371)
                      ..++.|.|
T Consensus        88 ~~~~~~~v   95 (95)
T cd05717          88 TAKATVTV   95 (95)
T ss_pred             eEEEEEEC
Confidence            55555543

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.95  E-value=4.3e-09  Score=66.15  Aligned_cols=57  Identities=30%  Similarity=0.546  Sum_probs=47.5

Q ss_pred             ccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542         25 VGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHVSADD   82 (371)
Q Consensus        25 ~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~   82 (371)
                      +|++++|.|. ..+.+.+.+.|++++..+...     ....|.|.+++.+|+|.|+|.+.+..
T Consensus         1 ~g~~~~l~C~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~   62 (63)
T smart00408        1 EGQSVTLTCP-AEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSA   62 (63)
T ss_pred             CCceEEEEee-CccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCC
Confidence            5899999996 456777889999998776521     56789999999999999999998754

>smart00409 IG Immunoglobulin

Probab=98.94  E-value=2.1e-08  Score=67.42  Aligned_cols=72  Identities=29%  Similarity=0.562  Sum_probs=57.7

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeC-CEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKD-GLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQ   90 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~-~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   90 (371)
                      ..+.+|+++.|.|..... +...+.|+++ +..+...         ....|.|.+++.+|+|.|.|.+.+..+.....+.
T Consensus         4 ~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~   82 (86)
T smart00409        4 VTVKEGESVTLSCEVSGS-PPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT   82 (86)
T ss_pred             EEEeCCCeEEEEEEEccC-CCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence            678899999999966544 7788999998 6655311         3478999999999999999999987777666666


Q ss_pred             EEE
Q psy14542         91 VIL   93 (371)
Q Consensus        91 l~v   93 (371)
                      |.|
T Consensus        83 l~V   85 (86)
T smart00409       83 LTV   85 (86)
T ss_pred             EEE
Confidence            665

>smart00410 IG_like Immunoglobulin like

Probab=98.94  E-value=2.1e-08  Score=67.42  Aligned_cols=72  Identities=29%  Similarity=0.562  Sum_probs=57.7

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeC-CEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKD-GLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQ   90 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~-~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   90 (371)
                      ..+.+|+++.|.|..... +...+.|+++ +..+...         ....|.|.+++.+|+|.|.|.+.+..+.....+.
T Consensus         4 ~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~   82 (86)
T smart00410        4 VTVKEGESVTLSCEVSGS-PPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT   82 (86)
T ss_pred             EEEeCCCeEEEEEEEccC-CCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence            678899999999966544 7788999998 6655311         3478999999999999999999987777666666


Q ss_pred             EEE
Q psy14542         91 VIL   93 (371)
Q Consensus        91 l~v   93 (371)
                      |.|
T Consensus        83 l~V   85 (86)
T smart00410       83 LTV   85 (86)
T ss_pred             EEE
Confidence            665

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.93  E-value=1.2e-08  Score=70.00  Aligned_cols=71  Identities=25%  Similarity=0.389  Sum_probs=50.8

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEE---------Eee---------CCeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLV---------LRR---------NSDEVLVLDRVQREDAGMYQCHVSADD   82 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~---------~~~---------~~~~~l~i~~~~~~d~G~Y~C~~~~~~   82 (371)
                      +.+.+|++++|.|.+. +.+.+.+.|++.+..         +..         ....+|.|.+++.+|+|.|.|.+....
T Consensus         7 ~~v~~G~~v~L~C~~~-~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   85 (95)
T cd05717           7 VTVVEGGTATLKCRVK-NNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP   85 (95)
T ss_pred             EEEcCCCCEEEEEEEC-CCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence            7899999999999664 456788999752111         100         034689999999999999999998654


Q ss_pred             CCeEEEEEEEE
Q psy14542         83 DSAQMSAQVIL   93 (371)
Q Consensus        83 ~~~~~~~~l~v   93 (371)
                      . ..+.+.|+|
T Consensus        86 ~-~~~~~~~~v   95 (95)
T cd05717          86 V-QTAKATVTV   95 (95)
T ss_pred             C-ceEEEEEEC
Confidence            3 355555543

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.92  E-value=3.8e-09  Score=71.32  Aligned_cols=66  Identities=21%  Similarity=0.349  Sum_probs=50.3

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccc--------------cCCceEE-------ecceEEEeccCCCCCeEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVE--------------ESDRIQR-------IGSSLSISHVEESDSGVWNCV  292 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~--------------~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~  292 (371)
                      +..|+.++|.|.+.+.+.+.+.|++++....              ...++..       ....|.|.++..+|+|.|.|.
T Consensus         4 ~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C~   83 (94)
T cd07690           4 GKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYICE   83 (94)
T ss_pred             eeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEEE
Confidence            7889999999999988889999997663211              1112221       113699999999999999999


Q ss_pred             EEcCCCC
Q psy14542        293 ANNSEGQ  299 (371)
Q Consensus       293 a~n~~g~  299 (371)
                      +.|..++
T Consensus        84 v~~~~~~   90 (94)
T cd07690          84 VEDKKEE   90 (94)
T ss_pred             ECCccce
Confidence            9987765

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.91  E-value=6.5e-09  Score=71.79  Aligned_cols=71  Identities=20%  Similarity=0.296  Sum_probs=51.0

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCE-----EEeeC--------------------CeeEEEEccCCcCCCeEEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGL-----VLRRN--------------------SDEVLVLDRVQREDAGMYQ   75 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~-----~~~~~--------------------~~~~l~i~~~~~~d~G~Y~   75 (371)
                      ..+.+|+++.|.|.... .....+.|+|+..     .+..-                    .+++|.|.+++.+|+|.|+
T Consensus         8 ~~~~~G~~V~L~v~~~p-~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~   86 (105)
T cd05774           8 PQVAEGENVLLLVHNLP-ENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYT   86 (105)
T ss_pred             CcccCCCCEEEEecCCC-CCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEE
Confidence            45899999999995432 2344799999621     11110                    5679999999999999999


Q ss_pred             EEEEcCCC-CeEEEEEEE
Q psy14542         76 CHVSADDD-SAQMSAQVI   92 (371)
Q Consensus        76 C~~~~~~~-~~~~~~~l~   92 (371)
                      |.+.+... .....+.|.
T Consensus        87 ~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          87 LQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             EEEEeCCccEEEEEEEEE
Confidence            99998763 344555554

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.90  E-value=1.5e-09  Score=68.59  Aligned_cols=53  Identities=34%  Similarity=0.607  Sum_probs=41.3

Q ss_pred             cCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------Ce---eEEEEccCCcCCCeEEEEEE
Q psy14542         26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SD---EVLVLDRVQREDAGMYQCHV   78 (371)
Q Consensus        26 G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~---~~l~i~~~~~~d~G~Y~C~~   78 (371)
                      |++++|.|.+....+...+.|++++......        ..   ..|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999976466778899999976533322        11   12999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.87  E-value=2e-08  Score=66.82  Aligned_cols=64  Identities=20%  Similarity=0.423  Sum_probs=47.3

Q ss_pred             EEEEEEeec-CCCCceEEEeCCcccccCCce---------EEecceEEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542        240 VILPCSAQG-NPLPTIKWYKQDSPVEESDRI---------QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ  303 (371)
Q Consensus       240 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~---------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  303 (371)
                      +.|+|.+.| .|.+.++|+++|..+......         ....+.|.+.....+|.|.|+|.|.|........
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~   75 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKE   75 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcE
Confidence            689999987 688899999999877543211         1122467888888889999999999987654333

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.84  E-value=1.8e-08  Score=68.31  Aligned_cols=62  Identities=15%  Similarity=0.276  Sum_probs=48.7

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccCC-ceEEecceEEEeccCCCCCeEEEEEEEcC
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD-RIQRIGSSLSISHVEESDSGVWNCVANNS  296 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  296 (371)
                      +..|+.++|.|... .+...+.|+++|....... ......+.+.|.++..+|+|.|+|...+.
T Consensus        13 V~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          13 VPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             cCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            89999999999875 6667899999987543211 11133467999999999999999999886

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.83  E-value=6.8e-08  Score=62.48  Aligned_cols=81  Identities=17%  Similarity=0.268  Sum_probs=57.9

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCC-CCCCeeEEEeCCEEEee---CCeeEEEEccCCcCCCeEEEEEEEcCCCCeEE
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRR---NSDEVLVLDRVQREDAGMYQCHVSADDDSAQM   87 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   87 (371)
                      ++++.+..  .+..|++++|+|+...+ .|.+.++|+..+.....   ....+|.+..++..|+|.|+|.+..+......
T Consensus         2 kvT~s~~~--~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~   79 (88)
T cd07694           2 KLTATSSD--HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTL   79 (88)
T ss_pred             eEecCCCC--eeecCCcEEEEEecCCCCCCCccEEEeCCCCccceeccCCccEEEeceeCcccCCEEEEEEEECceEEEE
Confidence            35555544  79999999999965443 34558999985443221   26789999999999999999999865444455


Q ss_pred             EEEEEEe
Q psy14542         88 SAQVILG   94 (371)
Q Consensus        88 ~~~l~v~   94 (371)
                      .+.|.|.
T Consensus        80 ~~~V~Vl   86 (88)
T cd07694          80 KLDIKVL   86 (88)
T ss_pred             EeeEEEE
Confidence            5555554

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.81  E-value=2.1e-08  Score=65.52  Aligned_cols=69  Identities=25%  Similarity=0.446  Sum_probs=50.7

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEE------eCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEc
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWL------KDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSA   80 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   80 (371)
                      +|.|.+.+.. .....+. ++|.|.+....+...++|+      .............|.|.++..+|.|.|+|.|.|
T Consensus         1 kP~I~~~~~~-~~~~~~~-~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    1 KPQISVPPPP-VVTSGGS-VTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             ESEEEEESTS-EEETTEE-EEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             CCEEEEcCCC-cEeecee-EEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            4677888887 4444444 9999977666558889999      222222222778899999999999999999975

...

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.80  E-value=7.1e-08  Score=64.97  Aligned_cols=73  Identities=22%  Similarity=0.336  Sum_probs=59.8

Q ss_pred             EEEeccCcEEEEEEecCCCCCCe-eEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSA-KAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGMYQCHVSADDDSA   85 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~-~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   85 (371)
                      +.|.+|+++.|.| ...++|.+. +.|.+++..+...              -.+.|.+..++.+|+|.|+|.+.|.....
T Consensus        13 ~~v~~gE~~~L~V-~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~   91 (101)
T cd05860          13 IFVNAGENLDLIV-EYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA   91 (101)
T ss_pred             EEEECCCCEEEEE-EEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence            6899999999999 556778776 9999875533221              23689999999999999999999998888


Q ss_pred             EEEEEEEEe
Q psy14542         86 QMSAQVILG   94 (371)
Q Consensus        86 ~~~~~l~v~   94 (371)
                      +.++.|.|.
T Consensus        92 s~tF~l~v~  100 (101)
T cd05860          92 SVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEe
Confidence            888888764

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.79  E-value=3.4e-08  Score=69.37  Aligned_cols=70  Identities=24%  Similarity=0.345  Sum_probs=52.6

Q ss_pred             ccCcEEEEEEecCC-----CCCCeeEEEeCCE----E---E-eeC--------------------CeeEEEEccCCcCCC
Q psy14542         25 VGHRIELHCRVSPK-----RLSSAKAWLKDGL----V---L-RRN--------------------SDEVLVLDRVQREDA   71 (371)
Q Consensus        25 ~G~~v~l~C~~~~~-----~~~~~~~W~~~~~----~---~-~~~--------------------~~~~l~i~~~~~~d~   71 (371)
                      .|++++|.|.....     .....+.|+|...    .   + ...                    ...+|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            48999999976543     2345699998431    1   1 100                    246899999999999


Q ss_pred             eEEEEEEEcCCCCeEEEEEEEEe
Q psy14542         72 GMYQCHVSADDDSAQMSAQVILG   94 (371)
Q Consensus        72 G~Y~C~~~~~~~~~~~~~~l~v~   94 (371)
                      |.|.|.+.+..+.....+.|.|.
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEE
Confidence            99999999888878888888876

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.79  E-value=3.2e-08  Score=65.11  Aligned_cols=72  Identities=19%  Similarity=0.344  Sum_probs=52.8

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCC-CCeEEEEEEEEe
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHVSADD-DSAQMSAQVILG   94 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~~l~v~   94 (371)
                      ..+.+|+++.|.|... + ....+.|++++..+...     ....|.|.+++.+|+|.|.|.+.-.+ ........|.|.
T Consensus         6 ~tv~~g~~v~L~C~~~-s-~~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l~v~   83 (85)
T cd05872           6 RTVAPGADVVLPCQLR-S-NLASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEEEGFQQLVASYSLNVV   83 (85)
T ss_pred             EEEecCCCEEEECCCC-C-CCccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEecCCCeEEEEEEEEEEe
Confidence            6799999999999543 3 36689999999877542     44457899999999999999987332 222344555443

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.78  E-value=8.8e-08  Score=67.60  Aligned_cols=72  Identities=19%  Similarity=0.362  Sum_probs=52.1

Q ss_pred             EEEeccCcEEEEEEecCCC---CCCeeEE---------------EeCCEEEee--C--------------CeeEEEEccC
Q psy14542         21 VVVDVGHRIELHCRVSPKR---LSSAKAW---------------LKDGLVLRR--N--------------SDEVLVLDRV   66 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~---~~~~~~W---------------~~~~~~~~~--~--------------~~~~l~i~~~   66 (371)
                      +.+..|+.++|.|......   +...+.|               |++|.....  .              .+.+|.|.++
T Consensus         8 v~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv   87 (116)
T cd05879           8 VYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNL   87 (116)
T ss_pred             EEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccC
Confidence            7899999999999876532   3457999               334443321  1              5678999999


Q ss_pred             CcCCCeEEEEEEEcCCCCe--EEEEEEE
Q psy14542         67 QREDAGMYQCHVSADDDSA--QMSAQVI   92 (371)
Q Consensus        67 ~~~d~G~Y~C~~~~~~~~~--~~~~~l~   92 (371)
                      +.+|+|.|+|.+.+..+..  ...+.|.
T Consensus        88 ~~sD~G~Y~C~v~n~p~~~~~~~~~~l~  115 (116)
T cd05879          88 DYTDNGTFTCDVKNPPDIVGKSSQVTLY  115 (116)
T ss_pred             CcccCEEEEEEEEcCCCcCCceeEEEEE
Confidence            9999999999999765432  3444443

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.78  E-value=1.3e-07  Score=63.78  Aligned_cols=59  Identities=24%  Similarity=0.302  Sum_probs=45.3

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEe---------e---------CCeeEEEEccCCcCCCeEEEEEEEc
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR---------R---------NSDEVLVLDRVQREDAGMYQCHVSA   80 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~---------~---------~~~~~l~i~~~~~~d~G~Y~C~~~~   80 (371)
                      +.+.+|++++|.|.+... ....+.|++-+..+.         .         +...+|.|.+++.+|+|.|.|.+..
T Consensus         7 vtv~~G~ta~L~C~v~~~-~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t   83 (95)
T cd05881           7 VTVVEGEVAIISCRVKNN-DDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT   83 (95)
T ss_pred             eEEcCCCcEEEEEEEccC-CccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence            789999999999966543 355688877553321         0         1566899999999999999999975

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.77  E-value=7.9e-08  Score=67.48  Aligned_cols=70  Identities=23%  Similarity=0.387  Sum_probs=53.2

Q ss_pred             ccCcEEEEEEecCC-----CCCCeeEEEeCC-----E-EEee--C--------------------CeeEEEEccCCcCCC
Q psy14542         25 VGHRIELHCRVSPK-----RLSSAKAWLKDG-----L-VLRR--N--------------------SDEVLVLDRVQREDA   71 (371)
Q Consensus        25 ~G~~v~l~C~~~~~-----~~~~~~~W~~~~-----~-~~~~--~--------------------~~~~l~i~~~~~~d~   71 (371)
                      .|++++|.|.....     .....+.|++..     . .+..  .                    ...+|.|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            48999999976543     235679999851     1 1100  0                    467899999999999


Q ss_pred             eEEEEEEEcCCCCeEEEEEEEEe
Q psy14542         72 GMYQCHVSADDDSAQMSAQVILG   94 (371)
Q Consensus        72 G~Y~C~~~~~~~~~~~~~~l~v~   94 (371)
                      |.|.|.+.+..+.....+.|.|.
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~  103 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVR  103 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEE
Confidence            99999999877777888888876

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.77  E-value=4.8e-08  Score=67.04  Aligned_cols=71  Identities=14%  Similarity=0.212  Sum_probs=51.4

Q ss_pred             eccCcEEEEEEecCCCCCCeeEEEeCCEEEee-------C-----------------CeeEEEEccCCcCCCeEEEEEEE
Q psy14542         24 DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR-------N-----------------SDEVLVLDRVQREDAGMYQCHVS   79 (371)
Q Consensus        24 ~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~-------~-----------------~~~~l~i~~~~~~d~G~Y~C~~~   79 (371)
                      ..|++|+|.|..........+.|++....+..       .                 .+.+|.|.+++.+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            47999999996544244567999985422110       0                 45899999999999999999999


Q ss_pred             cCCCCe-EEEEEEEEe
Q psy14542         80 ADDDSA-QMSAQVILG   94 (371)
Q Consensus        80 ~~~~~~-~~~~~l~v~   94 (371)
                      ...+.. ...+.|.|+
T Consensus        82 ~~~~~~~~~~f~L~vy   97 (97)
T cd05775          82 TKNGVTITKEFTLHIY   97 (97)
T ss_pred             cCCCCeEEEEEEEEeC
Confidence            776544 566766663

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.75  E-value=1e-08  Score=67.06  Aligned_cols=59  Identities=41%  Similarity=0.739  Sum_probs=41.8

Q ss_pred             CCeEEEEEEeecCC-CCceEEEeCCc-ccccCCceEEecceEEEeccCCCCCeEEEEEEEc
Q psy14542        237 DESVILPCSAQGNP-LPTIKWYKQDS-PVEESDRIQRIGSSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       237 g~~~~l~C~~~~~p-~~~v~W~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      +..+.|.|.+.+.+ .+.++|+.... ............+.|.|.++..+|.|.|+|.|+|
T Consensus        15 ~~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   15 GGSVTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             TEEEEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             ceeEEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            33399999999877 78899991110 1111111224557899999999999999999987

...

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.74  E-value=8.6e-08  Score=66.52  Aligned_cols=68  Identities=22%  Similarity=0.485  Sum_probs=48.1

Q ss_pred             cCcEEEEEEecCCC--CCCeeEEEeCCE--EE---------ee-------C-----------CeeEEEEccCCcCCCeEE
Q psy14542         26 GHRIELHCRVSPKR--LSSAKAWLKDGL--VL---------RR-------N-----------SDEVLVLDRVQREDAGMY   74 (371)
Q Consensus        26 G~~v~l~C~~~~~~--~~~~~~W~~~~~--~~---------~~-------~-----------~~~~l~i~~~~~~d~G~Y   74 (371)
                      |++++|+|......  ....+.|++...  .+         ..       .           ...+|.|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            78999999765321  123578877431  11         00       0           246899999999999999


Q ss_pred             EEEEEcCCCCeEEEEEEEE
Q psy14542         75 QCHVSADDDSAQMSAQVIL   93 (371)
Q Consensus        75 ~C~~~~~~~~~~~~~~l~v   93 (371)
                      +|.+.+..+..+..+.|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999987776777777776

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.74  E-value=1.2e-07  Score=66.67  Aligned_cols=70  Identities=20%  Similarity=0.351  Sum_probs=52.2

Q ss_pred             ccCcEEEEEEecCCCC---------CCeeEEEeC--CEEEe-----------eC---------------CeeEEEEccCC
Q psy14542         25 VGHRIELHCRVSPKRL---------SSAKAWLKD--GLVLR-----------RN---------------SDEVLVLDRVQ   67 (371)
Q Consensus        25 ~G~~v~l~C~~~~~~~---------~~~~~W~~~--~~~~~-----------~~---------------~~~~l~i~~~~   67 (371)
                      .|++++|+|......+         ...+.|+|.  ++...           ..               ...+|.|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            3899999997654332         366999984  11100           00               34789999999


Q ss_pred             cCCCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542         68 REDAGMYQCHVSADDDSAQMSAQVILG   94 (371)
Q Consensus        68 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~   94 (371)
                      .+|+|.|.|.+.......+..+.|.|.
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~  107 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVT  107 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence            999999999999876777888888886

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.73  E-value=5.4e-08  Score=66.95  Aligned_cols=69  Identities=19%  Similarity=0.274  Sum_probs=50.9

Q ss_pred             cCcEEEEEEecCCCCCCeeEEEeCCE----EEe-e----C------------------CeeEEEEccCCcCCCeEEEEEE
Q psy14542         26 GHRIELHCRVSPKRLSSAKAWLKDGL----VLR-R----N------------------SDEVLVLDRVQREDAGMYQCHV   78 (371)
Q Consensus        26 G~~v~l~C~~~~~~~~~~~~W~~~~~----~~~-~----~------------------~~~~l~i~~~~~~d~G~Y~C~~   78 (371)
                      |++++|.|..........+.|+|...    .+. .    .                  ...+|.|.+++.+|+|.|.|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            78999999755443334699998421    111 0    0                  5678999999999999999998


Q ss_pred             E-cCCCCeEEEEEEEEe
Q psy14542         79 S-ADDDSAQMSAQVILG   94 (371)
Q Consensus        79 ~-~~~~~~~~~~~l~v~   94 (371)
                      . .+.|..+..+.|+|+
T Consensus        81 ~~~p~g~~~~~~~L~v~   97 (97)
T cd05846          81 NTFPDGSKSGTMCLTVY   97 (97)
T ss_pred             EeCCCCCeeeEEEEEEC
Confidence            7 566777888888874

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.72  E-value=7.7e-08  Score=65.52  Aligned_cols=67  Identities=24%  Similarity=0.287  Sum_probs=51.1

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee----C-----CeeEEEEccCCcCCCeEEEEEEEc
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR----N-----SDEVLVLDRVQREDAGMYQCHVSA   80 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~----~-----~~~~l~i~~~~~~d~G~Y~C~~~~   80 (371)
                      +|.|...|..  .+.+|++|+|.|....  ....+.|+|+|.....    .     ....|.|.+++.+|+|.|+|....
T Consensus         1 kP~l~a~p~~--vV~~G~~VTL~C~~~~--~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711           1 KPFLSAHPSP--VVPSGENVTLQCHSDI--RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             CCEEEecCCC--ccCCCCeEEEEEecCC--CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            3677777765  7899999999995433  4457999997754221    1     356789999999999999999863

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.71  E-value=1.3e-07  Score=65.30  Aligned_cols=74  Identities=23%  Similarity=0.312  Sum_probs=51.8

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccc-------------------cCCceE-EecceEEEeccCCCCCeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVE-------------------ESDRIQ-RIGSSLSISHVEESDSGVWNCVA  293 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~-------------------~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a  293 (371)
                      +.+|+++.|.|.........+.|+|......                   ..+|.. ..+++|.|.+++.+|+|.|+|.+
T Consensus        10 ~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~v   89 (105)
T cd05774          10 VAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTLQT   89 (105)
T ss_pred             ccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEEEE
Confidence            8899999999975433334799999632110                   112222 34578999999999999999999


Q ss_pred             EcCCC-CceeEEEEE
Q psy14542        294 NNSEG-QDKMQLFIQ  307 (371)
Q Consensus       294 ~n~~g-~~~~~~~l~  307 (371)
                      .+... ....++.|.
T Consensus        90 ~~~~~~~~~~~v~l~  104 (105)
T cd05774          90 ITTNFQVEQATVHLQ  104 (105)
T ss_pred             EeCCccEEEEEEEEE
Confidence            98874 445555554

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.71  E-value=6e-08  Score=66.23  Aligned_cols=66  Identities=17%  Similarity=0.321  Sum_probs=47.1

Q ss_pred             cCcEEEEEEecCCCCCCeeEEEeCCEE-----Ee----eC---------------CeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542         26 GHRIELHCRVSPKRLSSAKAWLKDGLV-----LR----RN---------------SDEVLVLDRVQREDAGMYQCHVSAD   81 (371)
Q Consensus        26 G~~v~l~C~~~~~~~~~~~~W~~~~~~-----~~----~~---------------~~~~l~i~~~~~~d~G~Y~C~~~~~   81 (371)
                      |++|+|.|.... .....+.|+++...     +.    ..               .+.+|.|.+++.+|+|.|+|.+...
T Consensus         1 G~~VtL~c~~~~-~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~   79 (92)
T cd05741           1 GESVTLPVSNLP-ENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIIST   79 (92)
T ss_pred             CCcEEEEcccCC-CCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcC
Confidence            789999996544 45567999985421     11    00               5589999999999999999999876


Q ss_pred             CCCe-EEEEEEE
Q psy14542         82 DDSA-QMSAQVI   92 (371)
Q Consensus        82 ~~~~-~~~~~l~   92 (371)
                      .+.. ...+.|.
T Consensus        80 ~~~~~~~~~~l~   91 (92)
T cd05741          80 NGVTENAKFFLR   91 (92)
T ss_pred             CCcEEEEEEEEE
Confidence            5433 3444443

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.70  E-value=1.6e-07  Score=69.88  Aligned_cols=74  Identities=14%  Similarity=0.281  Sum_probs=57.6

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------------------CeeEEEEccCCcCCCeEEEEEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------------------SDEVLVLDRVQREDAGMYQCHV   78 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------------------~~~~l~i~~~~~~d~G~Y~C~~   78 (371)
                      +.|.+|++++|.|....+.....+.|+|..+.+..-                      ...+|.|.+++.+|+|.|.|..
T Consensus        25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F  104 (189)
T PHA02987         25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF  104 (189)
T ss_pred             EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence            678999999999976545556789999863322110                      5578999999999999999998


Q ss_pred             E-cCCC-CeEEEEEEEEe
Q psy14542         79 S-ADDD-SAQMSAQVILG   94 (371)
Q Consensus        79 ~-~~~~-~~~~~~~l~v~   94 (371)
                      . -+.| ..+.++.|+|.
T Consensus       105 ~tfp~G~~~~gt~CLtVt  122 (189)
T PHA02987        105 NTLLSKNNEKGVVCLNVT  122 (189)
T ss_pred             EecCCCCCceeEEEEEEE
Confidence            7 3445 67889999998

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.70  E-value=1.3e-07  Score=62.79  Aligned_cols=65  Identities=17%  Similarity=0.374  Sum_probs=47.3

Q ss_pred             cEEEEEEecCCCCCCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeEEEEEEEcCCCCe--EEEEEE
Q psy14542         28 RIELHCRVSPKRLSSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGMYQCHVSADDDSA--QMSAQV   91 (371)
Q Consensus        28 ~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l   91 (371)
                      ++.|.|.+..+.|.+.+.|+++|+.+...              ..+.|.|.....+|.|.|+|.+.+.....  ..++.|
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l   80 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL   80 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence            46899977666788899999999876533              12367787777788899999999876443  344444


Q ss_pred             E
Q psy14542         92 I   92 (371)
Q Consensus        92 ~   92 (371)
                      .
T Consensus        81 ~   81 (82)
T cd05759          81 D   81 (82)
T ss_pred             c
Confidence            3

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.70  E-value=2e-07  Score=65.26  Aligned_cols=70  Identities=20%  Similarity=0.339  Sum_probs=51.9

Q ss_pred             ccCcEEEEEEecCCCC-----------CCeeEEEeC--CE---EEee---------C--------------CeeEEEEcc
Q psy14542         25 VGHRIELHCRVSPKRL-----------SSAKAWLKD--GL---VLRR---------N--------------SDEVLVLDR   65 (371)
Q Consensus        25 ~G~~v~l~C~~~~~~~-----------~~~~~W~~~--~~---~~~~---------~--------------~~~~l~i~~   65 (371)
                      .|++++|+|......+           ...|.|+|-  +.   .+..         .              .+.+|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            4899999997764321           357999983  11   1100         0              467999999


Q ss_pred             CCcCCCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542         66 VQREDAGMYQCHVSADDDSAQMSAQVILG   94 (371)
Q Consensus        66 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   94 (371)
                      ++.+|+|.|+|.+.......+..+.|.|.
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence            99999999999999776677777888776

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>PHA03270 envelope glycoprotein C; Provisional

Probab=98.69  E-value=3.5e-05  Score=64.83  Aligned_cols=205  Identities=14%  Similarity=0.139  Sum_probs=115.3

Q ss_pred             eEEEEccCCcCCCeEEEEEEEcCCCCe--EEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCC--CceEEEeeC
Q psy14542         59 EVLVLDRVQREDAGMYQCHVSADDDSA--QMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRL--SSAKAWLKD  134 (371)
Q Consensus        59 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~~v~W~~~  134 (371)
                      ..|.|..++...+|.|+-...+..+..  .+.+.|..+ .+|.+...+. .+.+|+...-.|.+..+.+  ...++|++|
T Consensus       182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~y-r~Psvsv~~~-PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~n  259 (466)
T PHA03270        182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMF-RRPSLSIRPH-AVLEGEPFGATCVAANYYPGDRAAFRWFEG  259 (466)
T ss_pred             ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEe-cCCcccccCC-ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            459999999999999999987766543  345666666 5555554433 3368999999999987644  368999999


Q ss_pred             CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecccccee--eeeeccceee
Q psy14542        135 GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS--LLSVNRGRLS  212 (371)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~--~~~~~~~~l~  212 (371)
                      +..+...+.....   .....         ++ ++  ..+.+++.+.......-..+|.+.-. ....  ....+...-.
T Consensus       260 g~~V~~~~~i~~~---~~~~~---------dG-fs--~vStvtsea~~~~~~PPsLrC~v~W~-rd~vS~sR~nAa~~P~  323 (466)
T PHA03270        260 GDEVFAPERVRTR---VDAQR---------DG-FS--ATSTLTSEARAGLAPPRNLTCEFTWH-RDSVSFSRRNATGAPT  323 (466)
T ss_pred             CccccCcceeeee---eEecC---------CC-ee--EEEEEeccccccCCCCCCceEEEEEc-cCCccceeecccccCc
Confidence            9987543211100   00001         11 11  11445554433222134789998765 2222  1122222334


Q ss_pred             eecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCC-CceEEEeCCcccccCCceEE------ecceEEEeccC--C
Q psy14542        213 LTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL-PTIKWYKQDSPVEESDRIQR------IGSSLSISHVE--E  283 (371)
Q Consensus       213 v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~------~~~~l~i~~~~--~  283 (371)
                      |.     .+|.+........         ..|.+.--|. ..+.|+.++...........      .-+..+|.+..  .
T Consensus       324 VY-----~~P~Isv~F~dG~---------AVCtA~CVPegV~l~W~V~D~~~pa~~~~v~~G~C~~~PGlvNlrS~~plS  389 (466)
T PHA03270        324 VL-----PRPTIEMEFGGDE---------AVCTAACVPEGVTLAWLLGADPAPAEKAAVAGGPCPGRPGLARVRSALPLS  389 (466)
T ss_pred             cc-----cCCeEEEEEeCCE---------EEEeccccCCCCEEEEEecCCCCCCccceeecccCCCCCCceeeecccccc
Confidence            44     6666665443332         2366654443 57999987765543322111      11223333221  1


Q ss_pred             CCCeEEEEEEEc
Q psy14542        284 SDSGVWNCVANN  295 (371)
Q Consensus       284 ~d~G~Y~C~a~n  295 (371)
                      ++..+|+|++..
T Consensus       390 d~~~eYTCrl~G  401 (466)
T PHA03270        390 REHSEYTCRLVG  401 (466)
T ss_pred             cCCceEEEEEee
Confidence            124699999863

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.67  E-value=2e-07  Score=63.74  Aligned_cols=38  Identities=21%  Similarity=0.450  Sum_probs=33.7

Q ss_pred             CeeEEEEccCCcCCCeEEEEEEEc-CCCCeEEEEEEEEe
Q psy14542         57 SDEVLVLDRVQREDAGMYQCHVSA-DDDSAQMSAQVILG   94 (371)
Q Consensus        57 ~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v~   94 (371)
                      .+.+|.|.+++.+|+|.|+|.+.+ +.|..+..+.|.|+
T Consensus        61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V~   99 (99)
T cd05886          61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTVY   99 (99)
T ss_pred             CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEEC
Confidence            558999999999999999999998 67778888888874

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.65  E-value=1e-07  Score=67.38  Aligned_cols=65  Identities=22%  Similarity=0.359  Sum_probs=49.1

Q ss_pred             eCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCE---E-------------------Eee---CCeeEEEEccCCcCC
Q psy14542         16 SPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGL---V-------------------LRR---NSDEVLVLDRVQRED   70 (371)
Q Consensus        16 ~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~---~-------------------~~~---~~~~~l~i~~~~~~d   70 (371)
                      .|.. +.+.+|++++|.|.+... +...+.|+|...   .                   +..   ....+|.|.+++.+|
T Consensus         4 ~~~~-v~~~~G~~v~L~C~~~~~-~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D   81 (109)
T cd04983           4 SPQS-LSVQEGENVTLNCNYSTS-TFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSD   81 (109)
T ss_pred             cCCc-eEEcCCCCEEEEEEECCC-CccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHH
Confidence            3445 889999999999976644 677899998421   0                   000   046789999999999


Q ss_pred             CeEEEEEEEcCC
Q psy14542         71 AGMYQCHVSADD   82 (371)
Q Consensus        71 ~G~Y~C~~~~~~   82 (371)
                      +|.|.|.+.+..
T Consensus        82 sG~Y~C~~~~~~   93 (109)
T cd04983          82 SAVYFCALSESG   93 (109)
T ss_pred             CEEEEEEEecCC
Confidence            999999998653

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.65  E-value=1.4e-07  Score=66.90  Aligned_cols=72  Identities=21%  Similarity=0.326  Sum_probs=49.4

Q ss_pred             EEEeccCcEEEEEEecCCCC---CCeeEEEeC----CEE--Ee-eC-----------------------CeeEEEEccCC
Q psy14542         21 VVVDVGHRIELHCRVSPKRL---SSAKAWLKD----GLV--LR-RN-----------------------SDEVLVLDRVQ   67 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~---~~~~~W~~~----~~~--~~-~~-----------------------~~~~l~i~~~~   67 (371)
                      +.+.+|++++|.|......+   ...+.|++.    +..  +. ..                       .+.+|.|.+++
T Consensus         8 v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~   87 (115)
T cd05880           8 VEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQ   87 (115)
T ss_pred             EEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCC
Confidence            78999999999997654332   246999741    111  10 00                       35679999999


Q ss_pred             cCCCeEEEEEEEcCCCC--eEEEEEEE
Q psy14542         68 REDAGMYQCHVSADDDS--AQMSAQVI   92 (371)
Q Consensus        68 ~~d~G~Y~C~~~~~~~~--~~~~~~l~   92 (371)
                      .+|+|.|.|.+.+..+.  ....+.|+
T Consensus        88 ~~D~G~Y~C~v~~~~~~~~~~~~~~~~  114 (115)
T cd05880          88 PTDNGTYTCQVKNPPDVHGPIGEIRLR  114 (115)
T ss_pred             hhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence            99999999999976542  23444444

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.63  E-value=3.8e-07  Score=59.30  Aligned_cols=71  Identities=20%  Similarity=0.408  Sum_probs=51.8

Q ss_pred             EEEEEEeec-CCCCceEEEeCCcccccCCce-------EEecceEEEeccCCCCCeEEEEEEEcCCCC-ceeEEEEEEec
Q psy14542        240 VILPCSAQG-NPLPTIKWYKQDSPVEESDRI-------QRIGSSLSISHVEESDSGVWNCVANNSEGQ-DKMQLFIQYAH  310 (371)
Q Consensus       240 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~  310 (371)
                      +.|+|.+.| .|.+.|+|++++..+......       ....++|.|..-..+|+..|+|+|.|..-. ......|.|.+
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y   81 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY   81 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence            679999876 788899999999888654221       123357888888888888999999997543 34555566643

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.63  E-value=2e-07  Score=66.47  Aligned_cols=66  Identities=26%  Similarity=0.468  Sum_probs=47.4

Q ss_pred             CCCcEEEeccCcEEEEEEecCCCC---CCeeEEEeC----C--EEEe-----------eC--------------CeeEEE
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKRL---SSAKAWLKD----G--LVLR-----------RN--------------SDEVLV   62 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~~---~~~~~W~~~----~--~~~~-----------~~--------------~~~~l~   62 (371)
                      |.. +.+.+|++++|.|......+   ...+.|++.    +  ..+.           ..              .+.+|.
T Consensus         5 p~~-v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   83 (116)
T cd05715           5 PRE-VYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV   83 (116)
T ss_pred             CCe-EEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence            445 78999999999997754432   246999762    1  0110           00              247899


Q ss_pred             EccCCcCCCeEEEEEEEcCCC
Q psy14542         63 LDRVQREDAGMYQCHVSADDD   83 (371)
Q Consensus        63 i~~~~~~d~G~Y~C~~~~~~~   83 (371)
                      |.+++.+|+|.|.|.+.+...
T Consensus        84 I~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          84 IHNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             EeeCCcccCEEEEEEEEeCCC
Confidence            999999999999999997654

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.63  E-value=3.6e-07  Score=62.00  Aligned_cols=70  Identities=27%  Similarity=0.433  Sum_probs=53.1

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCCCe--eEEEeCCEEEeeC-----------CeeEEEEccCCcCCCe-EEEEE
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSA--KAWLKDGLVLRRN-----------SDEVLVLDRVQREDAG-MYQCH   77 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~--~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G-~Y~C~   77 (371)
                      +|.+.+.. ..+.+|+.++|.|.+..+.|...  +.|||++..+...           ...+|.+. +..+|.| .|+|+
T Consensus         3 ~V~l~~~p-~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~   80 (100)
T cd05755           3 SVELSPLP-SWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCE   80 (100)
T ss_pred             eEEEecCC-CcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEE
Confidence            35555555 56899999999999988899887  7999999887653           24556665 4566666 99999


Q ss_pred             EEcCCC
Q psy14542         78 VSADDD   83 (371)
Q Consensus        78 ~~~~~~   83 (371)
                      +.++.+
T Consensus        81 A~l~l~   86 (100)
T cd05755          81 TELDLR   86 (100)
T ss_pred             EEeccC
Confidence            987654

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.62  E-value=4.9e-07  Score=61.06  Aligned_cols=62  Identities=24%  Similarity=0.378  Sum_probs=47.6

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCccc--------ccCCceEEe-----cceEEEeccCCCCCeEEEEEEEc
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPV--------EESDRIQRI-----GSSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      +.+|+++.|.|.+.+.....+.|++.+..+        ....|+...     .-+|.|.+++.+|+|.|.|.+..
T Consensus         9 v~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t   83 (95)
T cd05881           9 VVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT   83 (95)
T ss_pred             EcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence            889999999999988766678887665432        234555522     22599999999999999999975

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.62  E-value=4.7e-07  Score=63.54  Aligned_cols=75  Identities=23%  Similarity=0.394  Sum_probs=54.9

Q ss_pred             cCCeEEEEEEeecCC------CCceEEEeCCcc--------cc----------cCCceEEe-----cceEEEeccCCCCC
Q psy14542        236 KDESVILPCSAQGNP------LPTIKWYKQDSP--------VE----------ESDRIQRI-----GSSLSISHVEESDS  286 (371)
Q Consensus       236 ~g~~~~l~C~~~~~p------~~~v~W~~~~~~--------~~----------~~~~~~~~-----~~~l~i~~~~~~d~  286 (371)
                      .|++++|.|.....|      ...+.|++....        +.          ...|+...     ..+|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            488999999987553      346999985311        00          01233321     24799999999999


Q ss_pred             eEEEEEEEcCCCCceeEEEEEEec
Q psy14542        287 GVWNCVANNSEGQDKMQLFIQYAH  310 (371)
Q Consensus       287 G~Y~C~a~n~~g~~~~~~~l~v~~  310 (371)
                      |.|.|.+.+..+.....+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEEE
Confidence            999999999988888888888863

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.61  E-value=2.5e-07  Score=63.14  Aligned_cols=79  Identities=15%  Similarity=0.226  Sum_probs=51.3

Q ss_pred             CCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCcccee
Q psy14542        111 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSY  190 (371)
Q Consensus       111 g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y  190 (371)
                      |++|+|.|....... ..+.|++.........- ............+     ...++..+..+.+|.|.+++.+| +|.|
T Consensus         1 G~~VtL~c~~~~~~~-~~i~W~~~~~~~~~~~i-~~~~~~~~~~~~~-----~~~~R~~~~~~~sL~I~~l~~~D-sG~Y   72 (92)
T cd05741           1 GESVTLPVSNLPENL-QEITWYKGKDKSVEAEI-ASYIATNSTVFGP-----AYSGRETIYPNGSLLIQNLTKED-SGTY   72 (92)
T ss_pred             CCcEEEEcccCCCCC-EEEEEECCCCCCcceEE-EEEecCCceeECC-----CcCCeEEEcCCceEEEccCCchh-cEEE
Confidence            789999999876444 79999997643221100 0000000000011     12456777777899999999999 9999


Q ss_pred             EEEeecc
Q psy14542        191 QCRGVNK  197 (371)
Q Consensus       191 ~C~~~~~  197 (371)
                      +|.+...
T Consensus        73 ~c~v~~~   79 (92)
T cd05741          73 TLQIIST   79 (92)
T ss_pred             EEEEEcC
Confidence            9999887

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.60  E-value=4.3e-07  Score=62.75  Aligned_cols=68  Identities=16%  Similarity=0.331  Sum_probs=49.4

Q ss_pred             CcEEEEEEecCCC--CCCeeEEEeCCE----EE-----------eeC------------CeeEEEEccCCcCCCeEEEEE
Q psy14542         27 HRIELHCRVSPKR--LSSAKAWLKDGL----VL-----------RRN------------SDEVLVLDRVQREDAGMYQCH   77 (371)
Q Consensus        27 ~~v~l~C~~~~~~--~~~~~~W~~~~~----~~-----------~~~------------~~~~l~i~~~~~~d~G~Y~C~   77 (371)
                      ++|+|.|......  ....+.|+|...    .+           ...            .+.+|.|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            5789999765543  344699999432    10           000            357999999999999999999


Q ss_pred             EEc-CCCCeEEEEEEEEe
Q psy14542         78 VSA-DDDSAQMSAQVILG   94 (371)
Q Consensus        78 ~~~-~~~~~~~~~~l~v~   94 (371)
                      +.. +.|...+.+.|.|.
T Consensus        81 v~~~~~g~~~~~~~l~V~   98 (98)
T cd05718          81 FATFPQGNRQKVTTLTVL   98 (98)
T ss_pred             EEeCCCCcEEEEEEEEeC
Confidence            874 66778888888773

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.60  E-value=2.3e-07  Score=66.22  Aligned_cols=68  Identities=26%  Similarity=0.480  Sum_probs=50.3

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCE-----EEe-e-C-----------------------CeeEEE
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGL-----VLR-R-N-----------------------SDEVLV   62 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~-----~~~-~-~-----------------------~~~~l~   62 (371)
                      ++..|.. +.+.+|+++.|.|..........+.|++...     .+. . .                       ...+|.
T Consensus         4 vt~~~~~-v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~   82 (114)
T PF07686_consen    4 VTQPPSP-VTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLT   82 (114)
T ss_dssp             EEEEESE-EEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEE
T ss_pred             EEEeCCe-EEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEE
Confidence            4454555 8999999999999766233456799998211     222 0 0                       457899


Q ss_pred             EccCCcCCCeEEEEEEEcC
Q psy14542         63 LDRVQREDAGMYQCHVSAD   81 (371)
Q Consensus        63 i~~~~~~d~G~Y~C~~~~~   81 (371)
                      |.+++.+|+|.|.|.+...
T Consensus        83 i~~l~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   83 IKNLQPSDSGTYFCQVSTS  101 (114)
T ss_dssp             ESSESGGGEEEEEEEEEES
T ss_pred             ECCCCcCcCEEEEEEEEEC
Confidence            9999999999999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.60  E-value=3.4e-07  Score=61.97  Aligned_cols=68  Identities=24%  Similarity=0.409  Sum_probs=50.1

Q ss_pred             CcEEEEEEecCCCCCCeeEEEeCC----EEEee-----------C------------CeeEEEEccCCcCCCeEEEEEEE
Q psy14542         27 HRIELHCRVSPKRLSSAKAWLKDG----LVLRR-----------N------------SDEVLVLDRVQREDAGMYQCHVS   79 (371)
Q Consensus        27 ~~v~l~C~~~~~~~~~~~~W~~~~----~~~~~-----------~------------~~~~l~i~~~~~~d~G~Y~C~~~   79 (371)
                      ++++|+|..........+.|.|..    ..+..           .            .+.+|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            468999976654455679998731    11110           0            46799999999999999999976


Q ss_pred             -cCCCCeEEEEEEEEe
Q psy14542         80 -ADDDSAQMSAQVILG   94 (371)
Q Consensus        80 -~~~~~~~~~~~l~v~   94 (371)
                       .+.|..++.+.|.|.
T Consensus        81 tfP~G~~~~~~~l~~~   96 (96)
T cd05887          81 TFPLGNTQSSTTVTVL   96 (96)
T ss_pred             eCCCCCeeEEEEEEEC
Confidence             567888888888763

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.60  E-value=5.1e-07  Score=62.93  Aligned_cols=69  Identities=20%  Similarity=0.288  Sum_probs=50.7

Q ss_pred             cCcEEEEEEecCC------CCCCeeEEEeC-----CEEEe--e----------C--------------CeeEEEEccCCc
Q psy14542         26 GHRIELHCRVSPK------RLSSAKAWLKD-----GLVLR--R----------N--------------SDEVLVLDRVQR   68 (371)
Q Consensus        26 G~~v~l~C~~~~~------~~~~~~~W~~~-----~~~~~--~----------~--------------~~~~l~i~~~~~   68 (371)
                      |++++|+|.....      ...+.+.|.|.     ...+.  .          .              .+.+|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            7899999975421      12467999874     11110  0          0              467999999999


Q ss_pred             CCCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542         69 EDAGMYQCHVSADDDSAQMSAQVILG   94 (371)
Q Consensus        69 ~d~G~Y~C~~~~~~~~~~~~~~l~v~   94 (371)
                      +|+|.|.|.+.......+..+.|.|.
T Consensus        82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          82 SDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             HHCEEEEEEEEECCcccEEEEEEEEE
Confidence            99999999999876667888888876

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.60  E-value=2.2e-07  Score=65.65  Aligned_cols=65  Identities=20%  Similarity=0.455  Sum_probs=48.5

Q ss_pred             EeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCE---E--E----------e----eC---------CeeEEEEccC
Q psy14542         15 MSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGL---V--L----------R----RN---------SDEVLVLDRV   66 (371)
Q Consensus        15 ~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~---~--~----------~----~~---------~~~~l~i~~~   66 (371)
                      ..|.. +.+.+|++++|.|....  +...+.|||...   .  +          .    ..         ...+|.|.++
T Consensus         3 Q~p~~-~~v~~G~~v~l~C~~~~--~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~   79 (110)
T cd05899           3 QSPRY-LIKGRGQSVTLRCSQTS--GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSA   79 (110)
T ss_pred             ECCCc-eEEcCCCcEEEEEEECC--CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCC
Confidence            44555 89999999999996654  567899998421   0  0          0    00         3568999999


Q ss_pred             CcCCCeEEEEEEEcCC
Q psy14542         67 QREDAGMYQCHVSADD   82 (371)
Q Consensus        67 ~~~d~G~Y~C~~~~~~   82 (371)
                      +.+|+|.|.|.+....
T Consensus        80 ~~~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          80 EPEDSAVYLCASSLGG   95 (110)
T ss_pred             ChhhCEEEEEEeeCCC
Confidence            9999999999997643

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>PHA03269 envelope glycoprotein C; Provisional

Probab=98.59  E-value=1.1e-05  Score=68.78  Aligned_cols=207  Identities=16%  Similarity=0.176  Sum_probs=118.3

Q ss_pred             CeeEEEEccCCcCCCeEEEEEEEcCCC-C--eEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCC--CceEEE
Q psy14542         57 SDEVLVLDRVQREDAGMYQCHVSADDD-S--AQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRL--SSAKAW  131 (371)
Q Consensus        57 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~--~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~~v~W  131 (371)
                      ....|.|.+++..++|.|.-++.+... .  ....+.|.++ .+|.+...+. .+.+|+...-.|.+..+.+  +..++|
T Consensus       287 ~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~y-r~PsVsV~p~-PVL~Ge~YkAtC~vA~YYPp~SvrlrW  364 (566)
T PHA03269        287 SDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSY-KRPNITVIGD-PVLLGNPYAAYCKVNKYYPPHSVIVKW  364 (566)
T ss_pred             CccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEe-cCCCccccCC-ccccCCCceEEEEeeeecCCCceEEEE
Confidence            556799999999999999877654332 2  3456777777 5555554433 3468999999999987643  368999


Q ss_pred             eeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCC-ccceeEEEeeccccceeeee--ecc
Q psy14542        132 LKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESD-RYRSYQCRGVNKLTGASLLS--VNR  208 (371)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d-~~g~y~C~~~~~~~~~~~~~--~~~  208 (371)
                      ++|+..+....    ..+......+|         .++.  .+.|++......| ..-..+|.+.-. .+....+  .+.
T Consensus       365 f~ng~~V~~~~----it~t~~~~~dG---------lFSr--VSTLtlp~~~~~d~~PPsLrCeV~W~-RDsVS~tRfnAa  428 (566)
T PHA03269        365 TSNFGNIGKNF----ITDAIKENADG---------LFSS--VSALHIPAQKNADYPPPAIQCNVLWI-RDGVSHMKYSAA  428 (566)
T ss_pred             EeCCcccCccc----cccceeecCCC---------ceEE--EEEEeccCccccCCCCCCceEEEEEc-cCCchheecccc
Confidence            99988877421    11111111222         2222  2455553322222 134679998765 2222221  122


Q ss_pred             ceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCC--CceEEEeCCcccccCCceE-----EecceEEEecc
Q psy14542        209 GRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL--PTIKWYKQDSPVEESDRIQ-----RIGSSLSISHV  281 (371)
Q Consensus       209 ~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~~-----~~~~~l~i~~~  281 (371)
                      ..-.|.     .+|.+........         ..|.+.--|.  ..+.|+.++..........     ...+...|.+.
T Consensus       429 atP~VY-----~~PtISm~FedG~---------AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPGLVNLRS~  494 (566)
T PHA03269        429 VTPDVY-----PFPNVSIEIIDGH---------IVCLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKRFVNLQSS  494 (566)
T ss_pred             cCCccc-----cCCeEEEEEeCCE---------EEEecccccCCCceEEEEecCCCCCCccceeeccCCCCCCceeeccc
Confidence            233444     5666665443332         3477765554  5799998776644332222     12234566553


Q ss_pred             ---CCCC-CeEEEEEEEc
Q psy14542        282 ---EESD-SGVWNCVANN  295 (371)
Q Consensus       282 ---~~~d-~G~Y~C~a~n  295 (371)
                         ..+| --+|+|++..
T Consensus       495 ~pLS~~dgpveYTCrL~G  512 (566)
T PHA03269        495 CDTSELDGPITYSCHLDG  512 (566)
T ss_pred             ccccccCCceeEEEEEee
Confidence               3332 2499999864

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.57  E-value=6.9e-07  Score=62.66  Aligned_cols=67  Identities=28%  Similarity=0.493  Sum_probs=48.1

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC-----EEEee-----------C-------CeeEEEEccCCcC
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG-----LVLRR-----------N-------SDEVLVLDRVQRE   69 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~-----~~~~~-----------~-------~~~~l~i~~~~~~   69 (371)
                      +...|.. +.+.+|++++|.|..........+.|||..     ..+..           .       ....|.|.+++.+
T Consensus         3 v~Q~p~~-~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~   81 (106)
T cd04980           3 LTQSPAT-LSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPE   81 (106)
T ss_pred             EEECCCc-EEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChH
Confidence            4455666 889999999999965433225679999731     11110           0       3457999999999


Q ss_pred             CCeEEEEEEEc
Q psy14542         70 DAGMYQCHVSA   80 (371)
Q Consensus        70 d~G~Y~C~~~~   80 (371)
                      |+|.|.|.+.+
T Consensus        82 Dsg~Y~Ca~~~   92 (106)
T cd04980          82 DAAVYYCQQYG   92 (106)
T ss_pred             HCEEEEEEEeC
Confidence            99999999865

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.57  E-value=7.8e-07  Score=62.39  Aligned_cols=75  Identities=25%  Similarity=0.394  Sum_probs=54.5

Q ss_pred             cCCeEEEEEEeecCC------CCceEEEeCC---cc---c--ccC----------CceEE-----ecceEEEeccCCCCC
Q psy14542        236 KDESVILPCSAQGNP------LPTIKWYKQD---SP---V--EES----------DRIQR-----IGSSLSISHVEESDS  286 (371)
Q Consensus       236 ~g~~~~l~C~~~~~p------~~~v~W~~~~---~~---~--~~~----------~~~~~-----~~~~l~i~~~~~~d~  286 (371)
                      .|++++|.|.....+      ...+.|++..   ..   +  ..+          .++..     .+.+|.|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            488999999987643      4579999862   10   0  011          11111     235799999999999


Q ss_pred             eEEEEEEEcCCCCceeEEEEEEec
Q psy14542        287 GVWNCVANNSEGQDKMQLFIQYAH  310 (371)
Q Consensus       287 G~Y~C~a~n~~g~~~~~~~l~v~~  310 (371)
                      |.|.|.+.+..+.....+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999999888888888888864

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>PHA03273 envelope glycoprotein C; Provisional

Probab=98.55  E-value=2.3e-05  Score=66.56  Aligned_cols=205  Identities=16%  Similarity=0.131  Sum_probs=116.2

Q ss_pred             eEEEEccCCcCCCeEEEEEEEcCCCCeE--EEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCC--CceEEEeeC
Q psy14542         59 EVLVLDRVQREDAGMYQCHVSADDDSAQ--MSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRL--SSAKAWLKD  134 (371)
Q Consensus        59 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~~v~W~~~  134 (371)
                      ..|.|..++..++|.|+-...+.++...  ..+.|..+ .+|.+...+. .+.+|+...-.|.+..+.+  ...++|+++
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~y-r~Psvsv~~~-PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d  275 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTY-NAPLVDLSVH-PSLKGENYRAVCVVASYFPHSSVKLRWYKN  275 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEe-cCCcccccCC-ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            4599999999999999877666555433  44555445 5555554433 3468999999999987643  368999999


Q ss_pred             CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeee--ccceee
Q psy14542        135 GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSV--NRGRLS  212 (371)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~--~~~~l~  212 (371)
                      +.++.......-   ...         ...++.+  ...+.|.+.+....+..-..+|.+.-. .+....+.  +...-.
T Consensus       276 g~~V~~~~~~~~---~~~---------~~~~gl~--T~vStlt~~~~~~~~~PP~lrC~v~W~-rd~vS~~RfsAt~~P~  340 (486)
T PHA03273        276 AKEVDFTKYVTN---ASS---------VWVDGLI--TRISTLSIPVDPDEEYTPSLRCSIEWY-RDEVSFARIAKAGTPS  340 (486)
T ss_pred             Ceecccccccee---eEE---------EecCCce--EEEEEEeccCcccCCCCCCceEEEEEc-cCCcceeeccccccCc
Confidence            998772211000   000         0011221  222566666654433366899998865 22221111  122334


Q ss_pred             eecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCC--CceEEEeCCcc-cccCCceE-----EecceEEEecc---
Q psy14542        213 LTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL--PTIKWYKQDSP-VEESDRIQ-----RIGSSLSISHV---  281 (371)
Q Consensus       213 v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~~~~-~~~~~~~~-----~~~~~l~i~~~---  281 (371)
                      |.     .+|.+........         ..|.+.--|.  ..+.|+.++.. ........     ..-+...|...   
T Consensus       341 Vy-----~~P~Is~~F~~G~---------AVCtA~CVP~egV~l~W~v~D~~p~a~~~~~~tG~C~~~PglvNlrS~~pl  406 (486)
T PHA03273        341 VF-----VAPTVSVTVEDGD---------AVCTAKCVPSTGVFVSWSVNDHLPGVPSQDMTTGVCSSHPGLVNMQSRRPL  406 (486)
T ss_pred             cc-----cCCeEEEEEeCCE---------EEEecccccCCCeeEEEEccCCCCCCcccccccccCCCCCCceeeeccccc
Confidence            44     5666665443332         3477766655  67999877632 11111111     12234566553   


Q ss_pred             CCCCCe--EEEEEEEc
Q psy14542        282 EESDSG--VWNCVANN  295 (371)
Q Consensus       282 ~~~d~G--~Y~C~a~n  295 (371)
                      ..+| |  +|+|++..
T Consensus       407 s~~d-gp~eYTCrl~G  421 (486)
T PHA03273        407 SEEN-GEREYSCIIEG  421 (486)
T ss_pred             cccC-CceeEEEEEee
Confidence            3333 5  99999864

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.55  E-value=1.2e-06  Score=61.28  Aligned_cols=74  Identities=26%  Similarity=0.417  Sum_probs=53.3

Q ss_pred             cCCeEEEEEEeecCC------------CCceEEEeCC--cc----------c----ccCCceEE-------ecceEEEec
Q psy14542        236 KDESVILPCSAQGNP------------LPTIKWYKQD--SP----------V----EESDRIQR-------IGSSLSISH  280 (371)
Q Consensus       236 ~g~~~~l~C~~~~~p------------~~~v~W~~~~--~~----------~----~~~~~~~~-------~~~~l~i~~  280 (371)
                      .|++++|.|......            .+.|.|++-.  ..          +    .-..|+..       .+.+|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            388999999986432            3579999742  10          0    00123332       346899999


Q ss_pred             cCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542        281 VEESDSGVWNCVANNSEGQDKMQLFIQYA  309 (371)
Q Consensus       281 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  309 (371)
                      ++.+|+|.|.|.+.+........+.|.|.
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence            99999999999999877777878877775

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.54  E-value=1.1e-06  Score=57.16  Aligned_cols=66  Identities=20%  Similarity=0.293  Sum_probs=47.4

Q ss_pred             EEEEEEecCCCCCCeeEEEeCCEEEeeC------------CeeEEEEccCCcCCCeEEEEEEEcCCCC-eEEEEEEEEe
Q psy14542         29 IELHCRVSPKRLSSAKAWLKDGLVLRRN------------SDEVLVLDRVQREDAGMYQCHVSADDDS-AQMSAQVILG   94 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~   94 (371)
                      +.|.|...++.|.+.|.|++++.++...            ..++|.|..-..+|...|+|++.+..-. ......|.|.
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~   80 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ   80 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence            6899988899999999999998776542            3356777655555555999999876532 3445555554

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.51  E-value=1.9e-06  Score=60.21  Aligned_cols=38  Identities=24%  Similarity=0.467  Sum_probs=34.3

Q ss_pred             CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542         57 SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILG   94 (371)
Q Consensus        57 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   94 (371)
                      ++.+|.|.+++.+|+|.|+|.+.......+..+.|.|.
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            46899999999999999999999888778888888886

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.50  E-value=1.3e-06  Score=60.52  Aligned_cols=72  Identities=18%  Similarity=0.347  Sum_probs=49.2

Q ss_pred             CCeEEEEEEeecCC---CCceEEEeCCc-----------ccc------cCCceEE-------ecceEEEeccCCCCCeEE
Q psy14542        237 DESVILPCSAQGNP---LPTIKWYKQDS-----------PVE------ESDRIQR-------IGSSLSISHVEESDSGVW  289 (371)
Q Consensus       237 g~~~~l~C~~~~~p---~~~v~W~~~~~-----------~~~------~~~~~~~-------~~~~l~i~~~~~~d~G~Y  289 (371)
                      |++++|.|......   ...+.|++...           ...      ...|+..       ...+|.|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            67889999875321   13578877442           111      0123332       124799999999999999


Q ss_pred             EEEEEcCCCCceeEEEEEE
Q psy14542        290 NCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       290 ~C~a~n~~g~~~~~~~l~v  308 (371)
                      +|.+.|..+.....+.|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999998887777777776

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.50  E-value=1.2e-06  Score=60.49  Aligned_cols=37  Identities=22%  Similarity=0.443  Sum_probs=31.4

Q ss_pred             CeeEEEEccCCcCCCeEEEEEEEc-CCCCeEEEEEEEE
Q psy14542         57 SDEVLVLDRVQREDAGMYQCHVSA-DDDSAQMSAQVIL   93 (371)
Q Consensus        57 ~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v   93 (371)
                      .+.+|.|.+++.+|+|.|.|.+.+ +.|..+..+.|.|
T Consensus        62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          62 ADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             CceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence            467899999999999999999986 6666677787776

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.48  E-value=1.1e-06  Score=59.87  Aligned_cols=60  Identities=18%  Similarity=0.364  Sum_probs=45.0

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccC---Cc-eEEecceEEEeccCCCCCeEEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEES---DR-IQRIGSSLSISHVEESDSGVWNCVAN  294 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~---~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~  294 (371)
                      +..|++++|.|.... ....+.|+|+|......   .. .......+.|..++.+|+|.|.|...
T Consensus        12 V~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711          12 VPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             cCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            889999999998764 44579999988753221   10 01234578999999999999999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.45  E-value=1.7e-06  Score=61.12  Aligned_cols=65  Identities=34%  Similarity=0.516  Sum_probs=49.1

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcc--c------------ccCCceEE------ecceEEEeccCCCCCeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSP--V------------EESDRIQR------IGSSLSISHVEESDSGVWNCVA  293 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~--~------------~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~a  293 (371)
                      +..|++++|.|.+.+.+...+.|++....  .            ...+|+..      ....|.|.+++.+|+|.|.|.+
T Consensus        10 ~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~   89 (109)
T cd04983          10 VQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCAL   89 (109)
T ss_pred             EcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEE
Confidence            89999999999998777788999985321  0            12234432      2347999999999999999999


Q ss_pred             EcCCC
Q psy14542        294 NNSEG  298 (371)
Q Consensus       294 ~n~~g  298 (371)
                      .+..+
T Consensus        90 ~~~~~   94 (109)
T cd04983          90 SESGG   94 (109)
T ss_pred             ecCCC
Confidence            87643

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.44  E-value=1.2e-06  Score=59.49  Aligned_cols=67  Identities=10%  Similarity=0.215  Sum_probs=49.7

Q ss_pred             eecCCeEEEEEEeec-CCCCc--eEEEeCCcccccCCce------EEecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        234 VKKDESVILPCSAQG-NPLPT--IKWYKQDSPVEESDRI------QRIGSSLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~-~p~~~--v~W~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      +.+|+.++|+|.+.| .|.+.  +.|++++..+......      .....+|.+...+.+|.-.|+|+|.+..+..
T Consensus        13 ~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~~   88 (100)
T cd05755          13 QPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRPE   88 (100)
T ss_pred             ccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCcc
Confidence            789999999999986 67776  7999999887553211      1223467777666666669999999877654

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.44  E-value=1.4e-06  Score=62.24  Aligned_cols=66  Identities=27%  Similarity=0.432  Sum_probs=48.3

Q ss_pred             EEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--CEE---Eee--------------------CCeeEEEEccCCc
Q psy14542         14 EMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--GLV---LRR--------------------NSDEVLVLDRVQR   68 (371)
Q Consensus        14 ~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~~~---~~~--------------------~~~~~l~i~~~~~   68 (371)
                      ...|.. +.+.+|++++|.|..........+.|+|.  +..   +..                    ....+|.|.+++.
T Consensus         3 ~q~~~~-v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~   81 (116)
T cd07706           3 TQAQPD-VSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL   81 (116)
T ss_pred             EEeCCc-eEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH
Confidence            445555 88999999999997654334567999982  111   100                    0456899999999


Q ss_pred             CCCeEEEEEEEc
Q psy14542         69 EDAGMYQCHVSA   80 (371)
Q Consensus        69 ~d~G~Y~C~~~~   80 (371)
                      +|+|.|.|.+..
T Consensus        82 ~Dsg~Y~C~~~~   93 (116)
T cd07706          82 EDSAKYFCALST   93 (116)
T ss_pred             HHCEEEEEEEEC
Confidence            999999999984

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.44  E-value=2.3e-06  Score=59.07  Aligned_cols=71  Identities=23%  Similarity=0.381  Sum_probs=50.1

Q ss_pred             CeEEEEEEeecCC---CCceEEEeCCcc---------------ccc--CCceEE-----ecceEEEeccCCCCCeEEEEE
Q psy14542        238 ESVILPCSAQGNP---LPTIKWYKQDSP---------------VEE--SDRIQR-----IGSSLSISHVEESDSGVWNCV  292 (371)
Q Consensus       238 ~~~~l~C~~~~~p---~~~v~W~~~~~~---------------~~~--~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~  292 (371)
                      ++++|.|.....+   ...+.|++....               ...  ..|+..     .+.+|.|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4689999987644   346999985431               001  122221     245899999999999999999


Q ss_pred             EEc-CCCCceeEEEEEE
Q psy14542        293 ANN-SEGQDKMQLFIQY  308 (371)
Q Consensus       293 a~n-~~g~~~~~~~l~v  308 (371)
                      +.+ ..|.....+.|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            875 6788888887776

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.42  E-value=3e-06  Score=59.87  Aligned_cols=67  Identities=22%  Similarity=0.395  Sum_probs=47.5

Q ss_pred             eecCCeEEEEEEeecCC----CCceEEEe---------------CCcccc-cC----CceE------EecceEEEeccCC
Q psy14542        234 VKKDESVILPCSAQGNP----LPTIKWYK---------------QDSPVE-ES----DRIQ------RIGSSLSISHVEE  283 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p----~~~v~W~~---------------~~~~~~-~~----~~~~------~~~~~l~i~~~~~  283 (371)
                      +..|+.+.|.|......    ...+.|.+               +|.... ..    +|+.      ..+.+|.|.+++.
T Consensus        10 a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv~~   89 (116)
T cd05879          10 GTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNLDY   89 (116)
T ss_pred             EEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccCCc
Confidence            88999999999986532    34799943               232221 11    2443      2335799999999


Q ss_pred             CCCeEEEEEEEcCCCCc
Q psy14542        284 SDSGVWNCVANNSEGQD  300 (371)
Q Consensus       284 ~d~G~Y~C~a~n~~g~~  300 (371)
                      +|.|.|+|.+.|.-+..
T Consensus        90 sD~G~Y~C~v~n~p~~~  106 (116)
T cd05879          90 TDNGTFTCDVKNPPDIV  106 (116)
T ss_pred             ccCEEEEEEEEcCCCcC
Confidence            99999999999876643

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.42  E-value=1.1e-06  Score=60.72  Aligned_cols=62  Identities=31%  Similarity=0.561  Sum_probs=46.3

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCE-----EEe-------e--C----------CeeEEEEccCCcCCCeEEEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGL-----VLR-------R--N----------SDEVLVLDRVQREDAGMYQC   76 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~-----~~~-------~--~----------~~~~l~i~~~~~~d~G~Y~C   76 (371)
                      +.+.+|++++|.|..........+.|+|...     .+.       .  .          ...+|.|.+++.+|+|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            5688999999999765444566799998421     110       0  0          45689999999999999999


Q ss_pred             EEEcCC
Q psy14542         77 HVSADD   82 (371)
Q Consensus        77 ~~~~~~   82 (371)
                      .+....
T Consensus        82 ~~~~~~   87 (98)
T cd05716          82 GVGDDG   87 (98)
T ss_pred             EcccCC
Confidence            997654

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.41  E-value=5.9e-07  Score=62.99  Aligned_cols=62  Identities=27%  Similarity=0.395  Sum_probs=46.4

Q ss_pred             EEeccCcEEEEEEecCCCCCCeeEEEeCCE-----EEee----------C-------------CeeEEEEccCCcCCCeE
Q psy14542         22 VVDVGHRIELHCRVSPKRLSSAKAWLKDGL-----VLRR----------N-------------SDEVLVLDRVQREDAGM   73 (371)
Q Consensus        22 ~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~-----~~~~----------~-------------~~~~l~i~~~~~~d~G~   73 (371)
                      .+.+|++++|.|......+...+.|++...     .+..          .             ...+|.|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            578999999999766443567799998321     1110          0             35689999999999999


Q ss_pred             EEEEEEcCCC
Q psy14542         74 YQCHVSADDD   83 (371)
Q Consensus        74 Y~C~~~~~~~   83 (371)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999987554

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.41  E-value=2.3e-06  Score=60.12  Aligned_cols=75  Identities=32%  Similarity=0.486  Sum_probs=53.6

Q ss_pred             cCCeEEEEEEeecCC----------CCceEEEeCC--ccc--------------ccCCceEE-------ecceEEEeccC
Q psy14542        236 KDESVILPCSAQGNP----------LPTIKWYKQD--SPV--------------EESDRIQR-------IGSSLSISHVE  282 (371)
Q Consensus       236 ~g~~~~l~C~~~~~p----------~~~v~W~~~~--~~~--------------~~~~~~~~-------~~~~l~i~~~~  282 (371)
                      .|++++|.|.....+          ...+.|++..  ...              .-.+|+..       ...+|.|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            378999999987533          2569999852  110              00123332       23579999999


Q ss_pred             CCCCeEEEEEEEcCCCCceeEEEEEEec
Q psy14542        283 ESDSGVWNCVANNSEGQDKMQLFIQYAH  310 (371)
Q Consensus       283 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  310 (371)
                      .+|+|.|.|.+..........+.|.|..
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            9999999999998777778888888764

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.40  E-value=2.2e-06  Score=58.93  Aligned_cols=91  Identities=15%  Similarity=0.146  Sum_probs=50.4

Q ss_pred             CCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEE-cccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccce
Q psy14542        111 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVL-DRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRS  189 (371)
Q Consensus       111 g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~  189 (371)
                      |++++|.|..........+.|+|....   ........ ........+.|.-...-. .....+..|.|.+++.+| +|.
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~---~~~~i~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~nv~~~D-~G~   75 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGS---SPENIATYSEKYGVKIQPSYFRRRSIT-SLGLNSTSITIWNVTLED-EGC   75 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCC---CceEEEEEcccCCcccCCCccCeEEEc-CCCCCccEEEEeCCceee-eEE
Confidence            789999999765433247999884321   11111111 111111222222111100 011234689999999999 999


Q ss_pred             eEEEeeccccceeeeee
Q psy14542        190 YQCRGVNKLTGASLLSV  206 (371)
Q Consensus       190 y~C~~~~~~~~~~~~~~  206 (371)
                      |.|.+.....|......
T Consensus        76 Y~C~~~~~p~g~~~~~~   92 (97)
T cd05846          76 YKCIFNTFPDGSKSGTM   92 (97)
T ss_pred             EEEEEEeCCCCCeeeEE
Confidence            99999876455544444

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.38  E-value=1.3e-06  Score=59.90  Aligned_cols=64  Identities=23%  Similarity=0.401  Sum_probs=47.8

Q ss_pred             cCCeEEEEEEeecC-CC-CceEEEeCCcccccCCc-e--E-------EecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        236 KDESVILPCSAQGN-PL-PTIKWYKQDSPVEESDR-I--Q-------RIGSSLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       236 ~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~-~--~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      .|+.+.|.|.+.|+ |. +.++|+++|..+..... .  .       ...+.|.+......|.|.|+|+|.+....
T Consensus        12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             cCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            57899999999996 53 67999999988765542 1  1       11235667666677999999999987764

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.38  E-value=2.9e-06  Score=60.19  Aligned_cols=92  Identities=17%  Similarity=0.261  Sum_probs=50.1

Q ss_pred             CceeeecCCcEEEEEEecCCCC---CceEEEeeCCEEeeeCCeeEEEEcc-cCcCCCeeEEEEEeCCceeEeccceEEEE
Q psy14542        104 NQVVVDVGHRIELHCRVSPKRL---SSAKAWLKDGLVLRRNSDEVLVLDR-VQREDAGMYQCHIEDGKYHMLSSGELIIH  179 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~g~y~~~~~~~~~~~~~~~~l~i~  179 (371)
                      ....+.+|++++|.|.+.....   ...+.|++....- ......+.... ......+.|..+..-.......+.+|.|.
T Consensus         6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~-~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDG-GREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCC-CceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            3445589999999999864321   2469998621100 00111222211 11112333322111000001134679999


Q ss_pred             EeecCCccceeEEEeecc
Q psy14542        180 QVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       180 ~~~~~d~~g~y~C~~~~~  197 (371)
                      +++.+| +|.|.|.+.+.
T Consensus        85 ~v~~~D-~G~Y~C~v~~~  101 (115)
T cd05880          85 QLQPTD-NGTYTCQVKNP  101 (115)
T ss_pred             eCChhh-CEEEEEEEEeC
Confidence            999999 99999999976

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>PHA03271 envelope glycoprotein C; Provisional

Probab=98.35  E-value=0.00049  Score=57.81  Aligned_cols=210  Identities=11%  Similarity=0.110  Sum_probs=114.0

Q ss_pred             CeeEEEEccCCcCCCeEEEEEEEcCCCCe--EEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCC--CceEEEe
Q psy14542         57 SDEVLVLDRVQREDAGMYQCHVSADDDSA--QMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRL--SSAKAWL  132 (371)
Q Consensus        57 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~~v~W~  132 (371)
                      ....|.|+++...|+|.|+-...+.....  .+.+.+.+...+|.+...+.. +..|+...-.|.+..+.+  ...++|+
T Consensus       205 ~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~P-VL~Ge~YkAtC~vAnYYPP~SvrlrWf  283 (490)
T PHA03271        205 NTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPP-VLSGENYKASCIVRHFYPPGSVYVSWR  283 (490)
T ss_pred             ceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCc-cccCCCceEEEEeeeecCCCceEEEEE
Confidence            55689999999999997755555433332  344555555455555554433 368999999999987644  3689999


Q ss_pred             eCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceee
Q psy14542        133 KDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLS  212 (371)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~  212 (371)
                      ++|.........           .+....  .++......-+++.+.+...+. .-..+|.+.-..........+...-.
T Consensus       284 ~nG~~V~~~~~r-----------dt~~~w--~d~~~g~S~VSTltl~a~~~~~-PPsLRCeV~W~rd~v~s~rnAaatP~  349 (490)
T PHA03271        284 QNGNIATPRKDR-----------DGSFWW--FESGRGATLVSTITLGNSGIDP-PPKISCLVAWKQGDMISTTNATAIPT  349 (490)
T ss_pred             eCCccccCcccc-----------ceeEEE--ecCCCceeEEEEEEcccccCCC-CCCceEEEEEccCCceeeeecccCCc
Confidence            999877543210           000000  0001111111455554443333 56899998765121221112222334


Q ss_pred             eecchhccccceeeeeeeeeeeecCCeEEEEEEeecCC-CCceEEEeCCcccccCCc---eE----EecceEEEec-cCC
Q psy14542        213 LTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNP-LPTIKWYKQDSPVEESDR---IQ----RIGSSLSISH-VEE  283 (371)
Q Consensus       213 v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~~~~~~~~~~~---~~----~~~~~l~i~~-~~~  283 (371)
                      |.     .+|.+........         ..|.+.--| ...+.|+-++.+......   ..    ...+...|.. ...
T Consensus       350 VY-----~~P~ISv~FedG~---------AVCtA~CVP~gV~lrWlVgD~p~pn~t~d~~itGvC~erPGlVNLrS~lPl  415 (490)
T PHA03271        350 VY-----HHPRISLAFKDGY---------AICTIECVPSGITVRWLVHDEPQPNTTYDTVVTGLCRTIDRHRNLISRIPV  415 (490)
T ss_pred             cc-----cCCeEEEEEeCCE---------EEEeccccCCCcEEEEEecCCCCCCcccccccccccCCCCCceeeeccCCc
Confidence            44     5666665443332         236665444 357999987765432211   11    1223455554 233


Q ss_pred             CC---CeEEEEEEEc
Q psy14542        284 SD---SGVWNCVANN  295 (371)
Q Consensus       284 ~d---~G~Y~C~a~n  295 (371)
                      +|   --.|+|++..
T Consensus       416 Sd~dgpveYTCrL~G  430 (490)
T PHA03271        416 QDNWQKTKYTCRLIG  430 (490)
T ss_pred             hhcCCceeEEEEEee
Confidence            33   2599999864

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.35  E-value=5.5e-06  Score=54.82  Aligned_cols=60  Identities=25%  Similarity=0.428  Sum_probs=42.9

Q ss_pred             EEEEEEeec-CCCCceEEEeCCcccccCCceE--E-e------cceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        240 VILPCSAQG-NPLPTIKWYKQDSPVEESDRIQ--R-I------GSSLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       240 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~--~-~------~~~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      +.|+|.+.+ +|.+.|+|+++|..+.......  . .      .+.|.+.....+|...|+|+|.+....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            579999987 5888999999998776532111  1 1      134555556677788999999998754

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.34  E-value=3.8e-06  Score=56.86  Aligned_cols=89  Identities=20%  Similarity=0.330  Sum_probs=53.9

Q ss_pred             CcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcc--cCcCCCeeEEEEEeCCceeE----eccceEEEEEeecCC
Q psy14542        112 HRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDR--VQREDAGMYQCHIEDGKYHM----LSSGELIIHQVDESD  185 (371)
Q Consensus       112 ~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~g~y~~~~~~~~~~~----~~~~~l~i~~~~~~d  185 (371)
                      ++++|.|..........+.|.|....   . ...+.+..  ....-.+.|.     +|..+    ..+.+|.|.+++.+|
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~---~-~~~ia~y~~~~g~~~~~~y~-----~Rv~~~~~~~~d~sl~i~nv~~~D   71 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGK---G-SVTLAVHHPMYGISIQPDYQ-----GRVSFKNYSLLDATIMLENVGFSD   71 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCC---C-cEEEEEEcccCCcccChhhC-----CcEEEcCCCCCccEEEEeCCCccc
Confidence            36899999975444478999885321   0 01111111  1111112222     12222    235789999999999


Q ss_pred             ccceeEEEeeccccceeeeeeccceeee
Q psy14542        186 RYRSYQCRGVNKLTGASLLSVNRGRLSL  213 (371)
Q Consensus       186 ~~g~y~C~~~~~~~~~~~~~~~~~~l~v  213 (371)
                       +|.|+|.+.....|....+.   .|.|
T Consensus        72 -~G~Y~C~v~tfP~G~~~~~~---~l~~   95 (96)
T cd05887          72 -IGVYICKAVTFPLGNTQSST---TVTV   95 (96)
T ss_pred             -cEEEEEEEEeCCCCCeeEEE---EEEE
Confidence             99999999887677777666   6654

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.33  E-value=3.6e-06  Score=57.02  Aligned_cols=65  Identities=20%  Similarity=0.385  Sum_probs=44.8

Q ss_pred             CcEEEEEEecCCCCCCeeEEEeCCE----EEee-----C------------------CeeEEEEccCCcCCCeEEEEEEE
Q psy14542         27 HRIELHCRVSPKRLSSAKAWLKDGL----VLRR-----N------------------SDEVLVLDRVQREDAGMYQCHVS   79 (371)
Q Consensus        27 ~~v~l~C~~~~~~~~~~~~W~~~~~----~~~~-----~------------------~~~~l~i~~~~~~d~G~Y~C~~~   79 (371)
                      +.++|.|..........+.|.|-..    .+..     +                  .+.+|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            4688999665444456688988321    1111     0                  45789999999999999999997


Q ss_pred             c-CCCCeEEEEEE
Q psy14542         80 A-DDDSAQMSAQV   91 (371)
Q Consensus        80 ~-~~~~~~~~~~l   91 (371)
                      . +.|..++.+.|
T Consensus        81 t~P~g~~~~~i~~   93 (96)
T cd05889          81 TYPQGSWEKVIEV   93 (96)
T ss_pred             eCCCCCeEEEEEE
Confidence            4 45666665554

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.33  E-value=4.2e-06  Score=59.10  Aligned_cols=63  Identities=32%  Similarity=0.541  Sum_probs=47.2

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCc--ccc----------------cCCceEE-----ecceEEEeccCCCCCeEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDS--PVE----------------ESDRIQR-----IGSSLSISHVEESDSGVWN  290 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~--~~~----------------~~~~~~~-----~~~~l~i~~~~~~d~G~Y~  290 (371)
                      +.+|++++|.|.+.+ +...+.|++...  .+.                ...++..     ...+|.|.+++.+|+|.|.
T Consensus        10 v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~   88 (110)
T cd05899          10 KGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSAVYL   88 (110)
T ss_pred             EcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCEEEE
Confidence            899999999999987 667899998532  110                1133331     2247999999999999999


Q ss_pred             EEEEcCC
Q psy14542        291 CVANNSE  297 (371)
Q Consensus       291 C~a~n~~  297 (371)
                      |.+.+..
T Consensus        89 Ca~~~~~   95 (110)
T cd05899          89 CASSLGG   95 (110)
T ss_pred             EEeeCCC
Confidence            9998754

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.32  E-value=2.2e-06  Score=58.76  Aligned_cols=79  Identities=14%  Similarity=0.160  Sum_probs=47.7

Q ss_pred             cCCcEEEEEEecC-CCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-cceEEEEEeecCCcc
Q psy14542        110 VGHRIELHCRVSP-KRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-SGELIIHQVDESDRY  187 (371)
Q Consensus       110 ~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-~~~l~i~~~~~~d~~  187 (371)
                      .|++|+|.|.... ... ..+.|++....+....... .... .....+.|     .++..+.. +.+|.|.+++.+| +
T Consensus         3 ~G~sVtL~c~~~~~~~~-~~v~W~~~~~~~i~~~~~~-~~~~-~~~~~~~f-----~~R~~~~~~~~sL~I~~~~~~D-s   73 (97)
T cd05775           3 LGGSVTLPLNIPDGTEI-ESITWSFNTSLAIITPGEE-TAPE-IIVTDPSY-----KERVNFSQNDYSLQISNLKMED-A   73 (97)
T ss_pred             cCCeEEEeCCCCCCcEE-EEEEEecCCEeEEEecCCC-CCCc-cEEeCCCc-----eeeEEecCCceeEEECCCchHH-C
Confidence            6999999998865 333 6899999743222111000 0000 00001111     12344433 3789999999999 9


Q ss_pred             ceeEEEeecc
Q psy14542        188 RSYQCRGVNK  197 (371)
Q Consensus       188 g~y~C~~~~~  197 (371)
                      |.|.|.+...
T Consensus        74 G~Y~c~v~~~   83 (97)
T cd05775          74 GSYRAEINTK   83 (97)
T ss_pred             EEEEEEEEcC
Confidence            9999999987

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.32  E-value=6.1e-06  Score=56.42  Aligned_cols=89  Identities=16%  Similarity=0.244  Sum_probs=52.0

Q ss_pred             cEEEEEEecCCCC---CceEEEeeCCEEeeeCCeeEEEEc-ccCcCCCeeEEEEEeCCceeEe----ccceEEEEEeecC
Q psy14542        113 RIELHCRVSPKRL---SSAKAWLKDGLVLRRNSDEVLVLD-RVQREDAGMYQCHIEDGKYHML----SSGELIIHQVDES  184 (371)
Q Consensus       113 ~v~l~C~~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~~~g~y~~~~~~~~~~~~----~~~~l~i~~~~~~  184 (371)
                      .++|.|......+   ...|.|.+...   .........+ .......+.|.     +|..+.    .+.+|.|.+++.+
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~---~~~~~va~y~~~~g~~~~~~f~-----~Rv~f~~~~~~daSi~i~nl~~~   73 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTN---GSKQNVAIYNPSMGVSVLPPYR-----ERVTFKNPSFEDGTISLSRLELE   73 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCC---CCceEEEEECCcCCcccCcccc-----CcEEEcCCCCCcceEEEcCCccc
Confidence            6899999974321   13799987421   1111122222 11222233332     233322    4578999999999


Q ss_pred             CccceeEEEeeccccceeeeeeccceeee
Q psy14542        185 DRYRSYQCRGVNKLTGASLLSVNRGRLSL  213 (371)
Q Consensus       185 d~~g~y~C~~~~~~~~~~~~~~~~~~l~v  213 (371)
                      | +|.|+|.+.+...|......   .|.|
T Consensus        74 D-~G~Y~C~v~t~P~g~~~~~~---~L~V   98 (99)
T cd05886          74 D-EGVYICEFATFPTGNRESQL---NLTV   98 (99)
T ss_pred             c-CEEEEEEEEeCCCCCeEEEE---EEEE
Confidence            9 99999999995366554444   5544

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.31  E-value=8.5e-06  Score=52.92  Aligned_cols=74  Identities=16%  Similarity=0.394  Sum_probs=52.6

Q ss_pred             eecCCeEEEEEEeecCC--CCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542        234 VKKDESVILPCSAQGNP--LPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA  309 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p--~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  309 (371)
                      +..|++++|+|.....+  .+.++|...+......  ......+|.+..+...|+|.++|.+..........+.+.|.
T Consensus        11 lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~--~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~Vl   86 (88)
T cd07694          11 VLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI--LNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKVL   86 (88)
T ss_pred             eecCCcEEEEEecCCCCCCCccEEEeCCCCcccee--ccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEEE
Confidence            88999999999986544  4589998655432211  11245689999999999999999998654445555555553

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.29  E-value=1.1e-05  Score=55.67  Aligned_cols=36  Identities=17%  Similarity=0.388  Sum_probs=30.8

Q ss_pred             cceEEEeccCCCCCeEEEEEEEc-CCCCceeEEEEEE
Q psy14542        273 GSSLSISHVEESDSGVWNCVANN-SEGQDKMQLFIQY  308 (371)
Q Consensus       273 ~~~l~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~v  308 (371)
                      +.+|.|.+++.+|+|.|.|.+.+ ..|.....+.|.|
T Consensus        63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          63 DGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             ceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence            45799999999999999999987 6777777777776

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.28  E-value=6.1e-06  Score=58.85  Aligned_cols=87  Identities=15%  Similarity=0.312  Sum_probs=50.0

Q ss_pred             CceeeecCCcEEEEEEecCCC---CCceEEEeeCCEEeeeCCeeEEEEcccC--cCCCeeEEEEEeCCceeEe-----cc
Q psy14542        104 NQVVVDVGHRIELHCRVSPKR---LSSAKAWLKDGLVLRRNSDEVLVLDRVQ--REDAGMYQCHIEDGKYHML-----SS  173 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~--~~~~g~y~~~~~~~~~~~~-----~~  173 (371)
                      ....+.+|+.++|.|.+....   ....+.|++....- ......+....-.  ....+.|.     +|..+.     .+
T Consensus         6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~-----~R~~~~~~~~~~~   79 (116)
T cd05715           6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGS-GDTESIFHYHKGPYYPLKDGRFK-----DRVEWVGNPSRKD   79 (116)
T ss_pred             CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCC-CCcEEEEEEcCCccccccCcccc-----CcEEEecCCcCCe
Confidence            344558999999999986432   11469998743210 0111112111111  01123332     122222     23


Q ss_pred             ceEEEEEeecCCccceeEEEeecc
Q psy14542        174 GELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       174 ~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      ..|+|.+++.+| +|.|.|.+.+.
T Consensus        80 ~sL~I~~v~~~D-~G~Y~C~v~~~  102 (116)
T cd05715          80 ASIVIHNLQFTD-NGTYTCDVKNP  102 (116)
T ss_pred             eEEEEeeCCccc-CEEEEEEEEeC
Confidence            679999999999 99999999976

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.28  E-value=2.1e-06  Score=59.20  Aligned_cols=59  Identities=22%  Similarity=0.348  Sum_probs=42.7

Q ss_pred             EEeccCcEEEEEEecCC-CCCCeeEEEeCC---EE--Eee-----------C-------CeeEEEEccCCcCCCeEEEEE
Q psy14542         22 VVDVGHRIELHCRVSPK-RLSSAKAWLKDG---LV--LRR-----------N-------SDEVLVLDRVQREDAGMYQCH   77 (371)
Q Consensus        22 ~~~~G~~v~l~C~~~~~-~~~~~~~W~~~~---~~--~~~-----------~-------~~~~l~i~~~~~~d~G~Y~C~   77 (371)
                      .+.+|++++|.|..... .....+.||+..   ..  +..           .       ...+|.|.+++.+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            57899999999965433 144569999821   11  110           0       456799999999999999999


Q ss_pred             EEc
Q psy14542         78 VSA   80 (371)
Q Consensus        78 ~~~   80 (371)
                      +.+
T Consensus        82 ~~~   84 (98)
T cd04984          82 VWD   84 (98)
T ss_pred             Ecc
Confidence            874

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.28  E-value=3.7e-06  Score=58.89  Aligned_cols=65  Identities=32%  Similarity=0.517  Sum_probs=48.0

Q ss_pred             eecCCeEEEEEEeecC-CCCceEEEeCCcc--c---------------ccCCceEE------ecceEEEeccCCCCCeEE
Q psy14542        234 VKKDESVILPCSAQGN-PLPTIKWYKQDSP--V---------------EESDRIQR------IGSSLSISHVEESDSGVW  289 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~--~---------------~~~~~~~~------~~~~l~i~~~~~~d~G~Y  289 (371)
                      +..|+.++|.|.+... +...+.|++....  .               ....++..      ...+|.|.+++.+|+|.|
T Consensus         3 v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y   82 (105)
T cd00099           3 VSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAVY   82 (105)
T ss_pred             ecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEEE
Confidence            7889999999999876 5677999985331  0               01123331      123799999999999999


Q ss_pred             EEEEEcCCC
Q psy14542        290 NCVANNSEG  298 (371)
Q Consensus       290 ~C~a~n~~g  298 (371)
                      .|.+.+..+
T Consensus        83 ~C~v~~~~~   91 (105)
T cd00099          83 YCAVSLSGG   91 (105)
T ss_pred             EEEEecCCC
Confidence            999987765

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.27  E-value=9.6e-06  Score=53.68  Aligned_cols=66  Identities=20%  Similarity=0.329  Sum_probs=42.4

Q ss_pred             EEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEE
Q psy14542        114 IELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCR  193 (371)
Q Consensus       114 v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~  193 (371)
                      +.|.|.+.+..+.+.++|++++..+....  .   .... .+.|.|         ...  +.|.+.....++ .+.|+|.
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~--~---~~~~-~~~~~~---------~~~--s~l~~~~~~~d~-g~~~~C~   63 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK--L---KEED-ENGKTF---------TVT--SSLRFQVDREDD-GAPIICR   63 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce--e---eEec-CCCCEE---------EEE--EEEEEEcchhhC-CCEEEEE
Confidence            68999998874448999999998886432  1   0111 111222         221  456665555556 7899999


Q ss_pred             eecc
Q psy14542        194 GVNK  197 (371)
Q Consensus       194 ~~~~  197 (371)
                      +.+.
T Consensus        64 v~h~   67 (82)
T cd05761          64 VDHP   67 (82)
T ss_pred             EeCh
Confidence            9987

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.27  E-value=8.1e-06  Score=54.02  Aligned_cols=56  Identities=16%  Similarity=0.325  Sum_probs=39.5

Q ss_pred             EEEEEEecCCCCCCeeEEEeCCEEEeeC-------Ce-------eEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542         29 IELHCRVSPKRLSSAKAWLKDGLVLRRN-------SD-------EVLVLDRVQREDAGMYQCHVSADDDS   84 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~-------~~l~i~~~~~~d~G~Y~C~~~~~~~~   84 (371)
                      ++|.|.+.+++|...|.|+++|..+...       .+       ..|.+.....+|...|+|.+.+....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            6899988888899999999999876542       11       23344334444556999999987643

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.25  E-value=9.5e-06  Score=53.69  Aligned_cols=56  Identities=20%  Similarity=0.339  Sum_probs=39.5

Q ss_pred             EEEEEEecCCCCCCeeEEEeCCEEEeeC-------C------eeEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542         29 IELHCRVSPKRLSSAKAWLKDGLVLRRN-------S------DEVLVLDRVQREDAGMYQCHVSADDDS   84 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~------~~~l~i~~~~~~d~G~Y~C~~~~~~~~   84 (371)
                      +.|.|.+..+.|.+.+.|+++++.+...       .      ...|.+.....++.+.|+|.+.+....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            6899988788888999999999876532       1      223444433444456999999987654

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.24  E-value=1e-05  Score=54.71  Aligned_cols=63  Identities=30%  Similarity=0.593  Sum_probs=45.4

Q ss_pred             CCeEEEEEEee-cCCCCceEEEeCCcccccC---------CceEEecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        237 DESVILPCSAQ-GNPLPTIKWYKQDSPVEES---------DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       237 g~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      |+.+.|+|.+. ++|++.++|+.++..+...         .......+.|.+..-..++...++|+|.+....
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            67999999865 6899999999999877111         111223356777776677888999999987654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.22  E-value=3.1e-06  Score=58.26  Aligned_cols=74  Identities=16%  Similarity=0.311  Sum_probs=49.1

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC---------------CeeEEEEccCCcCCCeE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN---------------SDEVLVLDRVQREDAGM   73 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~   73 (371)
                      +|.+.+.|........++.++|.|.+...+| ...+.|++||..+...               ....|.+..-...+...
T Consensus         1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~   80 (100)
T cd07699           1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKV   80 (100)
T ss_pred             CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCe
Confidence            3667777766345557888999998777676 6679999999887433               12233343333333558


Q ss_pred             EEEEEEcCCC
Q psy14542         74 YQCHVSADDD   83 (371)
Q Consensus        74 Y~C~~~~~~~   83 (371)
                      |+|.+.....
T Consensus        81 ~sC~V~H~~l   90 (100)
T cd07699          81 YTCEVTHEGL   90 (100)
T ss_pred             EEEEEEecCC
Confidence            9999987543

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.21  E-value=1.6e-05  Score=55.59  Aligned_cols=37  Identities=22%  Similarity=0.405  Sum_probs=33.3

Q ss_pred             cceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542        273 GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA  309 (371)
Q Consensus       273 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  309 (371)
                      +.+|.|.+++.+|+|.|.|.+.+.......++.|.|.
T Consensus        78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            4689999999999999999999988888888888875

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.19  E-value=2.6e-05  Score=58.43  Aligned_cols=80  Identities=20%  Similarity=0.405  Sum_probs=60.2

Q ss_pred             eecCCeEEEEEEee-cCCCCceEEEeCCccc----------cc--CCceEE-----ecceEEEeccCCCCCeEEEEEEEc
Q psy14542        234 VKKDESVILPCSAQ-GNPLPTIKWYKQDSPV----------EE--SDRIQR-----IGSSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       234 ~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~~----------~~--~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      +.+|++++|.|... +...+.+.|+|....+          ..  .+|+..     .+..|.|.+++.+|+|.|.|....
T Consensus        27 V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~t  106 (189)
T PHA02987         27 VSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNT  106 (189)
T ss_pred             EcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEEEe
Confidence            89999999999974 5566789999864321          11  124443     456899999999999999998764


Q ss_pred             -CCC-CceeEEEEEEecCcc
Q psy14542        296 -SEG-QDKMQLFIQYAHGKY  313 (371)
Q Consensus       296 -~~g-~~~~~~~l~v~~~p~  313 (371)
                       +.| ..+.+.-|.|.....
T Consensus       107 fp~G~~~~gt~CLtVt~~~~  126 (189)
T PHA02987        107 LLSKNNEKGVVCLNVTTDSY  126 (189)
T ss_pred             cCCCCCceeEEEEEEEchhh
Confidence             456 778888898886554

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.19  E-value=5.6e-06  Score=56.76  Aligned_cols=61  Identities=20%  Similarity=0.352  Sum_probs=45.3

Q ss_pred             eccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC---------------CeeEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542         24 DVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN---------------SDEVLVLDRVQREDAGMYQCHVSADDDS   84 (371)
Q Consensus        24 ~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   84 (371)
                      ..|+.++|.|.+...+| ...+.|+++|..+...               ....|.+......|.|.|+|.+.+....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            47899999996665556 4689999998876533               2234666666666999999999986553

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.18  E-value=8.2e-06  Score=56.93  Aligned_cols=87  Identities=18%  Similarity=0.232  Sum_probs=49.1

Q ss_pred             CCcEEEEEEecCCC------CCceEEEeeCC--EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe------ccceE
Q psy14542        111 GHRIELHCRVSPKR------LSSAKAWLKDG--LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML------SSGEL  176 (371)
Q Consensus       111 g~~v~l~C~~~~~~------~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~------~~~~l  176 (371)
                      |++++|.|.+.-.+      ..+.+.|.+..  .....  ...+...+-.....+.|     .+|..+.      .+.+|
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~--~~v~v~~~~~~~~~~~y-----~gRvsl~~~~~~~~~asL   74 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQ--RPVLVARDNVVRVAKAF-----QGRVSLPGYPKNRYNASL   74 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceE--EEEEECCCCcEEEchhc-----ccEEEeecCCCCCceEEE
Confidence            78999999965321      23799998742  11110  00111111010011222     2344443      24689


Q ss_pred             EEEEeecCCccceeEEEeeccccceeeeee
Q psy14542        177 IIHQVDESDRYRSYQCRGVNKLTGASLLSV  206 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~  206 (371)
                      .|.+++.+| +|.|+|.+... .......+
T Consensus        75 ~i~nv~~~D-~G~Y~C~v~~g-~~~~~~~v  102 (110)
T cd05902          75 VLSRLRYSD-SGTYRCEVVLG-INDEQDTV  102 (110)
T ss_pred             EECCCCHHH-CEEEEEEEEEC-CcccEEEE
Confidence            999999999 99999999976 33333333

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.17  E-value=1.7e-05  Score=53.75  Aligned_cols=86  Identities=16%  Similarity=0.210  Sum_probs=49.7

Q ss_pred             CcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe----ccceEEEEEeecCCcc
Q psy14542        112 HRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML----SSGELIIHQVDESDRY  187 (371)
Q Consensus       112 ~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~----~~~~l~i~~~~~~d~~  187 (371)
                      +.++|.|..........++|.|....  ...............-.+.|.     +|....    .+.+|.|.+++.+| +
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~--~~~~iavy~~~~g~~~~~~y~-----~Rv~f~~~~~~d~sI~i~nvt~~D-~   72 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGS--HKENIAVYHPIYGMHIEDKYR-----GRVYFLNSTREDMSLSFNNATEED-V   72 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCC--CCceEEEEECCCCCEECcccc-----CeEEEecCCCCccEEEEcCCCccc-C
Confidence            46899999865433478999985321  011111111111111122232     222222    35789999999999 9


Q ss_pred             ceeEEEeeccccceeeee
Q psy14542        188 RSYQCRGVNKLTGASLLS  205 (371)
Q Consensus       188 g~y~C~~~~~~~~~~~~~  205 (371)
                      |.|+|.+.....|.....
T Consensus        73 G~Y~C~~~t~P~g~~~~~   90 (96)
T cd05889          73 GLYCCSLVTYPQGSWEKV   90 (96)
T ss_pred             EEEEEEEEeCCCCCeEEE
Confidence            999999988745555443

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.17  E-value=1.9e-05  Score=52.13  Aligned_cols=67  Identities=13%  Similarity=0.237  Sum_probs=44.0

Q ss_pred             EEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEE
Q psy14542        114 IELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCR  193 (371)
Q Consensus       114 v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~  193 (371)
                      +.|.|.+.++.+...++|+++|..+.......     ......|.|         ...  +.|.+..-..++ ...|+|.
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~-----~~~~~~~t~---------~~~--s~L~~~~~~~d~-g~~ytC~   64 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLK-----EEDANRKTF---------TVS--STLDFRVDRSDD-GVAIICR   64 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeE-----eeCCCCCEE---------EEE--EEEEEEcccccC-CCEEEEE
Confidence            68999998876559999999999875432110     111122222         222  567776555666 8899999


Q ss_pred             eecc
Q psy14542        194 GVNK  197 (371)
Q Consensus       194 ~~~~  197 (371)
                      +.+.
T Consensus        65 v~h~   68 (83)
T cd05884          65 VDHE   68 (83)
T ss_pred             Eech
Confidence            9987

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.17  E-value=3.3e-06  Score=60.32  Aligned_cols=64  Identities=20%  Similarity=0.453  Sum_probs=46.6

Q ss_pred             eCCCcEEEeccCcEEEEEEecCC-CCCCeeEEEeC--CE-E--Ee---------------eC----------CeeEEEEc
Q psy14542         16 SPSGQVVVDVGHRIELHCRVSPK-RLSSAKAWLKD--GL-V--LR---------------RN----------SDEVLVLD   64 (371)
Q Consensus        16 ~p~~~~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~--~~-~--~~---------------~~----------~~~~l~i~   64 (371)
                      .|.. +.+.+|++++|.|..... .+...+.|||.  +. .  +.               ..          ...+|.|.
T Consensus         4 ~p~~-~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   82 (116)
T cd04982           4 PQLS-ITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ   82 (116)
T ss_pred             cCCe-EEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence            3444 789999999999966432 45677999983  11 0  00               00          34689999


Q ss_pred             cCCcCCCeEEEEEEEc
Q psy14542         65 RVQREDAGMYQCHVSA   80 (371)
Q Consensus        65 ~~~~~d~G~Y~C~~~~   80 (371)
                      +++.+|+|.|.|.+..
T Consensus        83 ~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          83 NLEKEDSATYYCAYWE   98 (116)
T ss_pred             ECCHHHCEEEEEEEec
Confidence            9999999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.17  E-value=9.8e-06  Score=58.03  Aligned_cols=64  Identities=25%  Similarity=0.360  Sum_probs=45.3

Q ss_pred             CCCcEEEeccCcEEEEEEecCCC-----CCCeeEEEeCC------EEEe-eC---------------------CeeEEEE
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKR-----LSSAKAWLKDG------LVLR-RN---------------------SDEVLVL   63 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~-----~~~~~~W~~~~------~~~~-~~---------------------~~~~l~i   63 (371)
                      |+. +.+.+|++|+|.|......     ....+.|||..      ..+. ..                     ...+|.|
T Consensus         6 P~~-v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I   84 (119)
T cd05712           6 PKS-VSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI   84 (119)
T ss_pred             CCE-EEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence            444 7899999999999654221     13458999832      1110 00                     4578999


Q ss_pred             ccCCcCCCeEEEEEEEcC
Q psy14542         64 DRVQREDAGMYQCHVSAD   81 (371)
Q Consensus        64 ~~~~~~d~G~Y~C~~~~~   81 (371)
                      .+++.+|+|.|.|.+...
T Consensus        85 ~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          85 SDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             ccCChhhCeEEEEEEEcC
Confidence            999999999999998764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.17  E-value=1.2e-05  Score=56.30  Aligned_cols=63  Identities=27%  Similarity=0.484  Sum_probs=45.2

Q ss_pred             eecCCeEEEEEEeecCC-CCceEEEeCCc--cc----------c--cCCceEEe----cceEEEeccCCCCCeEEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNP-LPTIKWYKQDS--PV----------E--ESDRIQRI----GSSLSISHVEESDSGVWNCVAN  294 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p-~~~v~W~~~~~--~~----------~--~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~  294 (371)
                      +.+|++++|.|.+.+.. ...+.|++...  .+          .  ...++...    ...|.|.++..+|+|.|.|.+.
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~   91 (106)
T cd04980          12 VSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYCQQY   91 (106)
T ss_pred             ECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEEEEe
Confidence            89999999999987655 56799997431  10          0  01233321    1369999999999999999986


Q ss_pred             cC
Q psy14542        295 NS  296 (371)
Q Consensus       295 n~  296 (371)
                      +.
T Consensus        92 ~~   93 (106)
T cd04980          92 GT   93 (106)
T ss_pred             CC
Confidence            53

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.14  E-value=2.1e-05  Score=55.91  Aligned_cols=85  Identities=19%  Similarity=0.322  Sum_probs=48.4

Q ss_pred             eeeecCCcEEEEEEec-CCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEEEE
Q psy14542        106 VVVDVGHRIELHCRVS-PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELIIH  179 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~i~  179 (371)
                      ..+.+|+++.|.|... .... ..+.|++...    .......+..... ......-....++..+..     +..|.|.
T Consensus        11 v~~~~G~~v~L~C~~~~~~~~-~~v~W~~~~~----~~~~~~i~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~   84 (114)
T PF07686_consen   11 VTVQEGESVTLPCSYSSSSNQ-SSVYWYRQSP----GQGPQLIIRYSLS-STNETPTPSYSGRFTFSGNGSQNNFSLTIK   84 (114)
T ss_dssp             EEEETTSEEEEEEEEESSSSG-SEEEEEEEET----TSEEEEEEEEETT-EEEEEEETTETTTEEEEEETTTTEEEEEES
T ss_pred             EEEecCCCEEEEEEEeCCCCc-ceEEEEEECc----cccceeeeeeccc-eeeeccccceeeeeeeeecccCCeEEEEEC
Confidence            3448999999999998 3344 7999998332    0001111100000 000000001122333332     2469999


Q ss_pred             EeecCCccceeEEEeecc
Q psy14542        180 QVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       180 ~~~~~d~~g~y~C~~~~~  197 (371)
                      +++.+| +|.|.|.+...
T Consensus        85 ~l~~~D-sG~Y~C~v~~~  101 (114)
T PF07686_consen   85 NLQPSD-SGTYFCQVSTS  101 (114)
T ss_dssp             SESGGG-EEEEEEEEEES
T ss_pred             CCCcCc-CEEEEEEEEEC
Confidence            999999 99999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.13  E-value=1.4e-05  Score=52.84  Aligned_cols=56  Identities=16%  Similarity=0.350  Sum_probs=40.2

Q ss_pred             EEEEEEecCCCCCCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542         29 IELHCRVSPKRLSSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGMYQCHVSADDDS   84 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   84 (371)
                      ++|.|.+..++|...+.|+|||..+...              ....|.+..-...|...|+|++.+..-.
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            6899988888888999999999886543              1234555544444555999999876543

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.12  E-value=1.5e-05  Score=56.93  Aligned_cols=62  Identities=26%  Similarity=0.558  Sum_probs=46.0

Q ss_pred             eecCCeEEEEEEeec--CCCCceEEEeCC--cccc-----------------cCCceEE------ecceEEEeccCCCCC
Q psy14542        234 VKKDESVILPCSAQG--NPLPTIKWYKQD--SPVE-----------------ESDRIQR------IGSSLSISHVEESDS  286 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~--~p~~~v~W~~~~--~~~~-----------------~~~~~~~------~~~~l~i~~~~~~d~  286 (371)
                      +..|+.++|.|.+.+  .+.+.+.|++..  ..+.                 ...++..      ....|.|.+++.+|+
T Consensus        10 ~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds   89 (116)
T cd04982          10 REESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKEDS   89 (116)
T ss_pred             eCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHHHC
Confidence            888999999999877  567789999842  2110                 1234432      124699999999999


Q ss_pred             eEEEEEEEc
Q psy14542        287 GVWNCVANN  295 (371)
Q Consensus       287 G~Y~C~a~n  295 (371)
                      |.|.|.+..
T Consensus        90 g~Y~C~~~~   98 (116)
T cd04982          90 ATYYCAYWE   98 (116)
T ss_pred             EEEEEEEec
Confidence            999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.08  E-value=1.4e-05  Score=56.07  Aligned_cols=59  Identities=25%  Similarity=0.442  Sum_probs=42.1

Q ss_pred             EEeccCcEEEEEEecCCCCCCeeEEEeC--C---EE---E-e--------------eC----------CeeEEEEccCCc
Q psy14542         22 VVDVGHRIELHCRVSPKRLSSAKAWLKD--G---LV---L-R--------------RN----------SDEVLVLDRVQR   68 (371)
Q Consensus        22 ~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~---~~---~-~--------------~~----------~~~~l~i~~~~~   68 (371)
                      .+.+|++++|.|..........+.|||-  |   ..   + .              ..          ....|.|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            5789999999997544333457999982  2   10   0 0              00          235699999999


Q ss_pred             CCCeEEEEEEEc
Q psy14542         69 EDAGMYQCHVSA   80 (371)
Q Consensus        69 ~d~G~Y~C~~~~   80 (371)
                      +|+|.|.|....
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999999863

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=98.07  E-value=1.5e-05  Score=56.01  Aligned_cols=77  Identities=10%  Similarity=0.199  Sum_probs=48.7

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCC-CeeEEEeCCEEEeeC----------------CeeEEEEccCCcCC-C
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRN----------------SDEVLVLDRVQRED-A   71 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~~~----------------~~~~l~i~~~~~~d-~   71 (371)
                      +|.+.+.|.....+.+++.++|.|.+...+|. ..+.|++|+..+...                ....|.|......| .
T Consensus         2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~   81 (115)
T cd05769           2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPR   81 (115)
T ss_pred             CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCC
Confidence            45666666553455567889999977776776 479999999876532                12233333332223 3


Q ss_pred             eEEEEEEEcCCCCeE
Q psy14542         72 GMYQCHVSADDDSAQ   86 (371)
Q Consensus        72 G~Y~C~~~~~~~~~~   86 (371)
                      ..|+|.+........
T Consensus        82 ~~ytC~V~H~g~~~~   96 (115)
T cd05769          82 NTFTCIVQFYGGTDT   96 (115)
T ss_pred             CeEEEEEEEeCCccc
Confidence            489999887654443

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.04  E-value=2.2e-05  Score=54.11  Aligned_cols=63  Identities=25%  Similarity=0.458  Sum_probs=44.9

Q ss_pred             eecCCeEEEEEEeecC--CCCceEEEeCCc--ccc------------cCCceEE----ecceEEEeccCCCCCeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGN--PLPTIKWYKQDS--PVE------------ESDRIQR----IGSSLSISHVEESDSGVWNCVA  293 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~--p~~~v~W~~~~~--~~~------------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a  293 (371)
                      +..|++++|.|...+.  ....+.|++...  .+.            ...++..    ....|.|.+++.+|+|.|.|.+
T Consensus         3 v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~   82 (98)
T cd04984           3 VSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQV   82 (98)
T ss_pred             cCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEEE
Confidence            7889999999998764  456799997432  110            1123432    1236999999999999999998


Q ss_pred             EcC
Q psy14542        294 NNS  296 (371)
Q Consensus       294 ~n~  296 (371)
                      .+.
T Consensus        83 ~~~   85 (98)
T cd04984          83 WDS   85 (98)
T ss_pred             ccC
Confidence            753

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.04  E-value=2.6e-05  Score=52.68  Aligned_cols=60  Identities=20%  Similarity=0.320  Sum_probs=44.0

Q ss_pred             cCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542         26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGMYQCHVSADDDSA   85 (371)
Q Consensus        26 G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   85 (371)
                      |+.+.|.|....++|.+.+.|+.++..+...              ..+.|.+..-..++...++|.+.+.....
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~   87 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ   87 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence            7899999988889999999999998777111              23466676544445668999999876543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.02  E-value=1.8e-05  Score=54.51  Aligned_cols=66  Identities=15%  Similarity=0.357  Sum_probs=43.7

Q ss_pred             eecCCeEEEEEEeec-CC-CCceEEEeCCcccccCCc---eE-Eecc------eEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        234 VKKDESVILPCSAQG-NP-LPTIKWYKQDSPVEESDR---IQ-RIGS------SLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~---~~-~~~~------~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      ...++.++|+|.+.| +| ...+.|++||..+..+..   .. ..++      .|.+.....++...|+|++.+....
T Consensus        14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l~   91 (100)
T cd07699          14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGLS   91 (100)
T ss_pred             HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCCC
Confidence            445677999999998 45 357999999988753311   11 1122      4555555555678999999886543

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.97  E-value=0.00011  Score=49.83  Aligned_cols=70  Identities=21%  Similarity=0.292  Sum_probs=44.1

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCCC-eeEEEeCCEEEeeC---------CeeEEEE---ccCCcCCCeEEEEEE
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSS-AKAWLKDGLVLRRN---------SDEVLVL---DRVQREDAGMYQCHV   78 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~-~~~W~~~~~~~~~~---------~~~~l~i---~~~~~~d~G~Y~C~~   78 (371)
                      .+.+.|..  .+..|+.++|.|.+...+|.. .+.|++||..+...         .++++.+   -.+...+...|+|.+
T Consensus         2 ~v~v~~~~--~~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V   79 (94)
T cd05766           2 SVKISPSQ--TGSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVV   79 (94)
T ss_pred             EEEEEeCC--CccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEE
Confidence            44555554  234689999999877767655 79999999886542         1112221   123334555888888


Q ss_pred             EcCCC
Q psy14542         79 SADDD   83 (371)
Q Consensus        79 ~~~~~   83 (371)
                      .....
T Consensus        80 ~H~~l   84 (94)
T cd05766          80 EHSSL   84 (94)
T ss_pred             EeCCC
Confidence            76544

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.96  E-value=4.4e-05  Score=54.37  Aligned_cols=64  Identities=22%  Similarity=0.401  Sum_probs=44.5

Q ss_pred             eCCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeC---CEE--E---e--------e----C----------CeeEEEEc
Q psy14542         16 SPSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKD---GLV--L---R--------R----N----------SDEVLVLD   64 (371)
Q Consensus        16 ~p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~---~~~--~---~--------~----~----------~~~~l~i~   64 (371)
                      .|.. ..+.+|++++|.|...... ....+.|||-   +.+  +   .        .    .          ....|.|.
T Consensus         3 ~~~~-~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~   81 (117)
T cd04981           3 ESGP-GLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLN   81 (117)
T ss_pred             cCCC-eEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEEC
Confidence            3555 7899999999999654322 2456999981   111  1   0        0    0          22479999


Q ss_pred             cCCcCCCeEEEEEEEc
Q psy14542         65 RVQREDAGMYQCHVSA   80 (371)
Q Consensus        65 ~~~~~d~G~Y~C~~~~   80 (371)
                      +++.+|+|.|.|.+..
T Consensus        82 ~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          82 SLTPEDTAVYYCARGL   97 (117)
T ss_pred             CCCHHHCEEEEEEEEc
Confidence            9999999999999864

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.95  E-value=0.00012  Score=51.30  Aligned_cols=65  Identities=25%  Similarity=0.397  Sum_probs=42.1

Q ss_pred             eecCCeEEEEEEeecC-CC-CceEEEeCCcccccCCceE---------EecceEEEeccCCCCCe-EEEEEEEcCCCC
Q psy14542        234 VKKDESVILPCSAQGN-PL-PTIKWYKQDSPVEESDRIQ---------RIGSSLSISHVEESDSG-VWNCVANNSEGQ  299 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~G-~Y~C~a~n~~g~  299 (371)
                      ...|+.++|.|.+.|+ |. .+++|++||..+.....-.         ...+.|.+... ..|.| .|+|.+.+....
T Consensus        18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~-~~d~~~~ytC~V~H~~l~   94 (111)
T cd05772          18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKLT-EDDVHSQVTCEVQHRTLQ   94 (111)
T ss_pred             cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEECc-cccccCceEEEEEeCCCC
Confidence            5578889999999984 53 5799999999875431111         11123445433 33434 699999987543

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd00096 Ig Immunoglobulin domain

Probab=97.94  E-value=5.7e-05  Score=48.11  Aligned_cols=59  Identities=46%  Similarity=0.742  Sum_probs=44.7

Q ss_pred             EEEEEEeecCCCCceEEEeCCcccccCC--------ceEEecceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542        240 VILPCSAQGNPLPTIKWYKQDSPVEESD--------RIQRIGSSLSISHVEESDSGVWNCVANNSEG  298 (371)
Q Consensus       240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~--------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  298 (371)
                      +.|.|.+.+.+...+.|++++.......        ........|.|.++..+|.|.|.|.+.+..+
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~   67 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAG   67 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCcC
Confidence            3689999887778899999876544322        1123445799999999999999999988763

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.92  E-value=0.00011  Score=49.68  Aligned_cols=69  Identities=19%  Similarity=0.223  Sum_probs=44.1

Q ss_pred             cCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccc
Q psy14542        110 VGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYR  188 (371)
Q Consensus       110 ~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g  188 (371)
                      .++..+|.|.+.++ |....++|.++|..+.....    ......+.+|.|.         ..  +.|.+.   ..+ ..
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~----~~~~~~~~Dgty~---------~~--s~L~v~---~~~-~~   74 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVS----ETRYYPRQDLSFQ---------KF--SYLNFT---PEE-GD   74 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceE----EeeeEeCCCCcEE---------EE--EEEEEE---CCC-CC
Confidence            45668999999986 54589999999998754321    1122233444443         22  445444   345 67


Q ss_pred             eeEEEeecc
Q psy14542        189 SYQCRGVNK  197 (371)
Q Consensus       189 ~y~C~~~~~  197 (371)
                      .|+|.+.+.
T Consensus        75 ~ytC~V~H~   83 (94)
T cd05767          75 IYSCIVEHW   83 (94)
T ss_pred             eEEEEEEeC
Confidence            999999876

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.91  E-value=0.00011  Score=51.47  Aligned_cols=61  Identities=18%  Similarity=0.362  Sum_probs=41.5

Q ss_pred             EEeccCcEEEEEEecCCCCC-CeeEEEeCCEEEeeC-------Ce-------eEEEEccCCcCCCe-EEEEEEEcCCC
Q psy14542         22 VVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRN-------SD-------EVLVLDRVQREDAG-MYQCHVSADDD   83 (371)
Q Consensus        22 ~~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~~~-------~~-------~~l~i~~~~~~d~G-~Y~C~~~~~~~   83 (371)
                      ....|+.++|.|.+...+|. ..+.|+|||+.+...       .+       ..|.+. +...|.| .|+|.+.+...
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~~l   93 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHRTL   93 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeCCC
Confidence            45678899999987777774 689999999886532       11       123333 3444444 59999987653

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.90  E-value=0.00013  Score=49.62  Aligned_cols=70  Identities=19%  Similarity=0.281  Sum_probs=44.4

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCC-CeeEEEeCCEEEeeC---------CeeEEE---EccCCcCCCeEEEE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRN---------SDEVLV---LDRVQREDAGMYQC   76 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~~~---------~~~~l~---i~~~~~~d~G~Y~C   76 (371)
                      +|.+.+.+.. ..   |+.++|.|.+...+|. ..+.|++++..+...         .++++.   ...+...+.+.|+|
T Consensus         2 pP~v~v~~~~-~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC   77 (93)
T cd07698           2 PPEVRVTRKR-AP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSC   77 (93)
T ss_pred             CCEEEEEecC-CC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEE
Confidence            4666766665 22   7889999977665665 489999998632211         122221   22344457789999


Q ss_pred             EEEcCCC
Q psy14542         77 HVSADDD   83 (371)
Q Consensus        77 ~~~~~~~   83 (371)
                      .+.+...
T Consensus        78 ~V~H~~~   84 (93)
T cd07698          78 RVEHSGL   84 (93)
T ss_pred             EEEeCCC
Confidence            9987543

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.89  E-value=0.00012  Score=49.59  Aligned_cols=70  Identities=20%  Similarity=0.201  Sum_probs=44.5

Q ss_pred             ecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCcc
Q psy14542        109 DVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRY  187 (371)
Q Consensus       109 ~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~  187 (371)
                      ..|+.++|.|.+.++ |....++|+++|..+.....    ......+.+|.|.         +.  +.|.+.   ..+ .
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~----~~~~~~~~dgTy~---------~~--s~L~~~---~~~-~   72 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVV----STELIPNGDWTYQ---------IL--VMLETT---PSR-G   72 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCce----ecceEECCCCcEE---------EE--EEEEEc---CCC-C
Confidence            367889999999986 44468999999998765311    1122223334333         22  334333   345 6


Q ss_pred             ceeEEEeecc
Q psy14542        188 RSYQCRGVNK  197 (371)
Q Consensus       188 g~y~C~~~~~  197 (371)
                      ..|+|.+.+.
T Consensus        73 ~~ysC~V~H~   82 (94)
T cd05766          73 DTYTCVVEHS   82 (94)
T ss_pred             CEEEEEEEeC
Confidence            7999999987

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.87  E-value=0.00012  Score=47.51  Aligned_cols=68  Identities=18%  Similarity=0.306  Sum_probs=42.8

Q ss_pred             EEEEEEecCCCC-CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEE
Q psy14542        114 IELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQC  192 (371)
Q Consensus       114 v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C  192 (371)
                      ++|.|.+.++.+ ...++|+++|.++.....    ......+.+|.|         ...  +.|.+.....++ ...|+|
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~----~~~~~~~~~gt~---------~~~--s~L~v~~~~~~~-~~~~tC   65 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVS----TTDPLKNSDGTY---------FLS--SYLTVSASTWES-GDTYTC   65 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEE----ECceEECCCCCE---------EEE--EEEEEccccCCC-CCEEEE
Confidence            689999998744 379999999987433211    111111233333         222  556666556666 889999


Q ss_pred             Eeecc
Q psy14542        193 RGVNK  197 (371)
Q Consensus       193 ~~~~~  197 (371)
                      .+.+.
T Consensus        66 ~V~H~   70 (75)
T smart00407       66 QVTHE   70 (75)
T ss_pred             EEEEc
Confidence            99876

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.86  E-value=9.3e-05  Score=52.79  Aligned_cols=63  Identities=29%  Similarity=0.373  Sum_probs=45.2

Q ss_pred             eecCCeEEEEEEeecC-CCCceEEEeCCc--cc------------ccCCceEEe------cceEEEeccCCCCCeEEEEE
Q psy14542        234 VKKDESVILPCSAQGN-PLPTIKWYKQDS--PV------------EESDRIQRI------GSSLSISHVEESDSGVWNCV  292 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~-p~~~v~W~~~~~--~~------------~~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~  292 (371)
                      +..|++++|.|..... ....+.|++...  .+            ...+|+...      ..+|.|.+++.+|+|.|.|.
T Consensus        11 ~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~   90 (116)
T cd07706          11 VQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYFCA   90 (116)
T ss_pred             EcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEEEE
Confidence            8999999999998753 445699997321  10            112444432      23699999999999999999


Q ss_pred             EEcC
Q psy14542        293 ANNS  296 (371)
Q Consensus       293 a~n~  296 (371)
                      +...
T Consensus        91 ~~~~   94 (116)
T cd07706          91 LSTL   94 (116)
T ss_pred             EECC
Confidence            9853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.86  E-value=0.00013  Score=50.31  Aligned_cols=64  Identities=19%  Similarity=0.303  Sum_probs=45.5

Q ss_pred             eecCCeEEEEEEeec-CCCCceEEEeCCccc-------------ccCCceEEe------cceEEEeccCCCCCeEEEEEE
Q psy14542        234 VKKDESVILPCSAQG-NPLPTIKWYKQDSPV-------------EESDRIQRI------GSSLSISHVEESDSGVWNCVA  293 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~~-------------~~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~a  293 (371)
                      +.+|++++|.|.... .....+.|++....-             ....++...      ...|.|.+++.+|+|.|.|.+
T Consensus         4 ~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~   83 (98)
T cd05716           4 GELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGV   83 (98)
T ss_pred             EEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEc
Confidence            788999999999764 345568999854211             111333321      136999999999999999999


Q ss_pred             EcCC
Q psy14542        294 NNSE  297 (371)
Q Consensus       294 ~n~~  297 (371)
                      ....
T Consensus        84 ~~~~   87 (98)
T cd05716          84 GDDG   87 (98)
T ss_pred             ccCC
Confidence            7654

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.85  E-value=2.8e-05  Score=54.11  Aligned_cols=58  Identities=31%  Similarity=0.603  Sum_probs=41.2

Q ss_pred             EEeccCcEEEEEEecCCCCCCeeEEEeC--C---EE--Ee---e------------C---------CeeEEEEccCCcCC
Q psy14542         22 VVDVGHRIELHCRVSPKRLSSAKAWLKD--G---LV--LR---R------------N---------SDEVLVLDRVQRED   70 (371)
Q Consensus        22 ~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~---~~--~~---~------------~---------~~~~l~i~~~~~~d   70 (371)
                      .+.+|++|+|.|..... ....+.|||.  +   ..  +.   .            .         ...+|.|.+++.+|
T Consensus         2 ~v~~G~~vtL~C~~~~~-~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sD   80 (104)
T cd05720           2 DAELGQKVELKCEVLNS-SPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKEN   80 (104)
T ss_pred             cccCCCeEEEEEEecCC-CCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHH
Confidence            36799999999965433 3456899982  2   10  10   0            0         44579999999999


Q ss_pred             CeEEEEEEEc
Q psy14542         71 AGMYQCHVSA   80 (371)
Q Consensus        71 ~G~Y~C~~~~   80 (371)
                      +|.|.|.+..
T Consensus        81 sgtY~Ca~~~   90 (104)
T cd05720          81 EGYYFCSVAS   90 (104)
T ss_pred             CEEEEEEEcc
Confidence            9999999863

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd00096 Ig Immunoglobulin domain

Probab=97.84  E-value=0.00012  Score=46.58  Aligned_cols=53  Identities=30%  Similarity=0.556  Sum_probs=41.6

Q ss_pred             EEEEEEecCCCCCCeeEEEeCCEEEeeC-------------CeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542         29 IELHCRVSPKRLSSAKAWLKDGLVLRRN-------------SDEVLVLDRVQREDAGMYQCHVSADD   82 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------------~~~~l~i~~~~~~d~G~Y~C~~~~~~   82 (371)
                      +.|.|.... .+...+.|++++......             ....|.|.+++..|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASG-PPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecC-CCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            468996554 677889999976653211             66789999999999999999998765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.83  E-value=7.6e-05  Score=50.53  Aligned_cols=61  Identities=21%  Similarity=0.359  Sum_probs=39.4

Q ss_pred             EeccCcEEEEEEecCCCCC-CeeEEEeCCEEEeeC---------------CeeEEEEccCCcCCCeEEEEEEEcCCC
Q psy14542         23 VDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRN---------------SDEVLVLDRVQREDAGMYQCHVSADDD   83 (371)
Q Consensus        23 ~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~   83 (371)
                      ...++.++|.|.+...+|. ..+.|++||..+...               ....|.+..-...+...|+|.+.+...
T Consensus        11 ~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~   87 (94)
T cd05847          11 TGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGT   87 (94)
T ss_pred             cCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCe
Confidence            3356779999977776664 679999999876322               122333433322345689999987543

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.82  E-value=0.00016  Score=48.73  Aligned_cols=69  Identities=16%  Similarity=0.227  Sum_probs=44.1

Q ss_pred             ecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCcc
Q psy14542        109 DVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRY  187 (371)
Q Consensus       109 ~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~  187 (371)
                      ..|...+|.|.+.++ |....++|.++|..+. ...    ......+.+|.|.         +.  +.|.+.   ..+ .
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~----~~~~~p~~d~tyq---------~~--s~l~~~---~~~-~   72 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVE----QSDLSFSKDWTFY---------LL--KSTEFT---PTK-G   72 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcE----ECcEEECCCCCEE---------EE--EEEEEC---CCC-C
Confidence            346677999999986 5568899999999876 321    1222233444443         22  333333   455 7


Q ss_pred             ceeEEEeecc
Q psy14542        188 RSYQCRGVNK  197 (371)
Q Consensus       188 g~y~C~~~~~  197 (371)
                      ..|.|.+.+.
T Consensus        73 ~~ysC~V~H~   82 (93)
T cd05770          73 DEYACRVRHN   82 (93)
T ss_pred             CeEEEEEEEC
Confidence            7899999876

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>TIGR00864 PCC polycystin cation channel protein

Probab=97.81  E-value=0.071  Score=56.70  Aligned_cols=239  Identities=10%  Similarity=0.130  Sum_probs=134.3

Q ss_pred             EEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEE--EcCCCCeEEEEEEEEecceee
Q psy14542         22 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHV--SADDDSAQMSAQVILGGELVE   99 (371)
Q Consensus        22 ~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~--~~~~~~~~~~~~l~v~~~~~~   99 (371)
                      .+..|..+.|.-++..+. ...+.|..++..-..+....     .+..++|.|...+  .|..+....+..+.|.+....
T Consensus      1796 ~~~ag~~v~F~a~vstGs-nVsw~W~f~~g~s~~gk~v~-----~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~ 1869 (2740)
T TIGR00864      1796 FFAADSSVCFQGELATGT-NVSWCWAIDGGSSKMGKHAC-----MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFG 1869 (2740)
T ss_pred             ceecCcEEEEEEEccCCC-eeEEEEEeCCCCccccceeE-----EecCCCeEEEEEEEEEcccCcceeeeeEEEEEecce
Confidence            466778888877655554 34688877654322111111     4667899998775  477777777777777743333


Q ss_pred             EecCC-ceeeecCCcEEEEEEecCCCCCceEEEeeCCEE-eeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEE
Q psy14542        100 IASSN-QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLV-LRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELI  177 (371)
Q Consensus       100 ~~~~~-~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~  177 (371)
                      +.... ...+..|+.++|.+.+..... ..+.|...+.. ......                              ..+ 
T Consensus      1870 L~L~as~~~~~~n~~v~fsa~l~~GS~-Vtf~w~fGdgs~~~~t~~------------------------------~t~- 1917 (2740)
T TIGR00864      1870 LELKASKKIAAIGEKVEFQILLAAGSA-VNFRLQIGGAAPEVLQPG------------------------------PRF- 1917 (2740)
T ss_pred             EEEecccccccCCCEEEEEEEecCCCc-eEEEEEeCCCCceeecCC------------------------------CeE-
Confidence            33322 233478999999999877665 89999875432 111000                              000 


Q ss_pred             EEEeecCCccceeEEEee--ccccceeeeeeccceeeeecchhccccceeeeee-eeeeeecCCeEEEEEEeecCCCCce
Q psy14542        178 IHQVDESDRYRSYQCRGV--NKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKH-RILNVKKDESVILPCSAQGNPLPTI  254 (371)
Q Consensus       178 i~~~~~~d~~g~y~C~~~--~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~-~~~~~~~g~~~~l~C~~~~~p~~~v  254 (371)
                      .+  .... .|.|...+.  |. .+......   .+.|.++.    ..+.+... ... ...|+..++.-.+....+..+
T Consensus      1918 ~H--sY~~-~G~Y~VtV~A~N~-Vs~~~a~~---~V~Vle~V----~gL~I~~~c~~~-~~~g~~~tF~A~v~~g~~V~f 1985 (2740)
T TIGR00864      1918 SH--SFPR-VDDHMVNLRAKNE-VSCAQANL---HIEVLEAV----RGLQIPDCCAAG-IATGEEKNFTANVQRGKPVAF 1985 (2740)
T ss_pred             Ee--ecCC-CCcEEEEEEEEec-cceeeeeE---EEEEEEec----cceEecCCcccc-eecCceEEEEEEEecCCceEE
Confidence            00  0111 455555443  33 22322222   44443210    11111111 111 577889999988876666789


Q ss_pred             EEEeCCcccccCCceEEecceEEEeccCCCCCeEEEE--EEEcCCCCceeEEEEEEecCcc
Q psy14542        255 KWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNC--VANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       255 ~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C--~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      .|+.+-..+.....+...+..+...   ....|.|+.  +|.|..|....+..+.|+.+..
T Consensus      1986 ~W~f~~~~~~g~~~~~~~G~~vty~---~~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i~ 2043 (2740)
T TIGR00864      1986 AWTFDLHHLHGDSLVIHMGKDVSYT---AEAAGLLEIQLGAFNALGAENITLQLEAQDALM 2043 (2740)
T ss_pred             EEEeeecccCCCcceeecCCceEEc---cCCCcEEEEEEEEEcccCcccccEEEEEEehee
Confidence            9987644443333322222233322   235788776  4678888887777788877665

Note: this model has been restricted to the amino half because for technical reasons.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.79  E-value=0.00013  Score=47.27  Aligned_cols=55  Identities=22%  Similarity=0.413  Sum_probs=37.2

Q ss_pred             cEEEEEEecCCCCC-CeeEEEeCCEEEeeC---------------CeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542         28 RIELHCRVSPKRLS-SAKAWLKDGLVLRRN---------------SDEVLVLDRVQREDAGMYQCHVSADD   82 (371)
Q Consensus        28 ~v~l~C~~~~~~~~-~~~~W~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~Y~C~~~~~~   82 (371)
                      .++|.|.+...+|. ..+.|+|||+.+...               ....|.|.....++...|+|.+.+..
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            36899977766666 589999999863322               23345555445556679999997654

>PHA03270 envelope glycoprotein C; Provisional

Probab=97.79  E-value=0.0014  Score=55.49  Aligned_cols=81  Identities=14%  Similarity=0.169  Sum_probs=59.4

Q ss_pred             ceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCC-
Q psy14542        174 GELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP-  252 (371)
Q Consensus       174 ~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-  252 (371)
                      ..|.|..++... +|.|+-...+. .+...... ...+...     .+|.+...+..   +..|+...-+|.+..+.++ 
T Consensus       182 ~~L~I~slt~aT-eGvY~Wr~~~~-~~~~~~~~-~VtV~~y-----r~Psvsv~~~P---vL~Ge~Y~AtC~va~YYPp~  250 (466)
T PHA03270        182 QRLVIQELTLAT-QGMYYWARGPA-DRPHRYGT-WTRVRMF-----RRPSLSIRPHA---VLEGEPFGATCVAANYYPGD  250 (466)
T ss_pred             ceEEEEEccccc-ceEEEEEEecC-CCceeeee-EEEEEEe-----cCCcccccCCc---cccCCCceEEEEeeeecCCC
Confidence            469999999999 99999997775 33222111 1155555     67777766655   8899999999999875443 


Q ss_pred             --ceEEEeCCccccc
Q psy14542        253 --TIKWYKQDSPVEE  265 (371)
Q Consensus       253 --~v~W~~~~~~~~~  265 (371)
                        .+.|++|+.++..
T Consensus       251 Sv~lrWf~ng~~V~~  265 (466)
T PHA03270        251 RAAFRWFEGGDEVFA  265 (466)
T ss_pred             ceEEEEEeCCccccC
Confidence              4999999998754

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.78  E-value=0.0002  Score=48.20  Aligned_cols=70  Identities=17%  Similarity=0.225  Sum_probs=44.1

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC---------CeeEEEEc---cCCcCCCeEEEEE
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN---------SDEVLVLD---RVQREDAGMYQCH   77 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~---------~~~~l~i~---~~~~~d~G~Y~C~   77 (371)
                      |.+.+....  .+..|+..+|.|.+...+| ...+.|+|||..+. .         .+.++.+.   .+...+...|.|.
T Consensus         2 P~v~v~~~~--~~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~   78 (93)
T cd05770           2 PKVQVYSRF--PAENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACR   78 (93)
T ss_pred             CEEEEEecC--CCcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEE
Confidence            445554332  2345777899997776565 55799999999865 3         22233322   2345566689999


Q ss_pred             EEcCCC
Q psy14542         78 VSADDD   83 (371)
Q Consensus        78 ~~~~~~   83 (371)
                      +...+.
T Consensus        79 V~H~~l   84 (93)
T cd05770          79 VRHNSM   84 (93)
T ss_pred             EEECCC
Confidence            987543

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.78  E-value=0.00013  Score=49.40  Aligned_cols=65  Identities=14%  Similarity=0.269  Sum_probs=42.3

Q ss_pred             cCCeEEEEEEeec-CCC-CceEEEeCCcccccCCc----eEEe------cceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        236 KDESVILPCSAQG-NPL-PTIKWYKQDSPVEESDR----IQRI------GSSLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       236 ~g~~~~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~----~~~~------~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      .++.++|.|.+.| +|. .+++|+++|..+..+..    ....      .+.|.+......+...|+|++.+.....
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~   89 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTF   89 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeee
Confidence            3456899999998 454 56899999987633211    1111      2345555444556789999998866543

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>TIGR00864 PCC polycystin cation channel protein

Probab=97.77  E-value=0.051  Score=57.70  Aligned_cols=269  Identities=10%  Similarity=0.030  Sum_probs=146.5

Q ss_pred             EEeccCcEEEEEEecCCCCCCeeEEEeCC--E---EEeeCCeeEEEEccCCcCCCeEEEEEEE--cCCCCeEEEEEEEEe
Q psy14542         22 VVDVGHRIELHCRVSPKRLSSAKAWLKDG--L---VLRRNSDEVLVLDRVQREDAGMYQCHVS--ADDDSAQMSAQVILG   94 (371)
Q Consensus        22 ~~~~G~~v~l~C~~~~~~~~~~~~W~~~~--~---~~~~~~~~~l~i~~~~~~d~G~Y~C~~~--~~~~~~~~~~~l~v~   94 (371)
                      .+..|..+.|.-....+ ....+.|...+  .   ..........   .++..+.|.|...+.  |..|.......+.|.
T Consensus      1619 ~~~t~~~v~l~~~~~~G-TnvsysW~~~~~n~~dg~~~~~tGk~~---~vt~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~ 1694 (2740)
T TIGR00864      1619 YFETNHTVQFHAGFKDG-TNLSFSWNAILDNEPDGPAFAGSGKGA---KLNPLEAGPCDIFLQAANLLGQATADCTIDFL 1694 (2740)
T ss_pred             eeccCCEEEeeeccCCC-CeeEEEEEEecCCCCCCccccccCcee---EEecCCCceEEEEEEEeecccceeeEEEEEEE
Confidence            45556666666544333 34568885511  1   1111111112   233467899977654  777777777777776


Q ss_pred             cceeeEecC-CceeeecCCcEEEEEEecCCCCCceEEEeeCCEE-eeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec
Q psy14542         95 GELVEIASS-NQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLV-LRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS  172 (371)
Q Consensus        95 ~~~~~~~~~-~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~  172 (371)
                      +....+... ....+..|+.+.|.-....... ..++|...+.. ......                             
T Consensus      1695 epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~-vty~W~~gdG~s~~~s~p----------------------------- 1744 (2740)
T TIGR00864      1695 EPAGNLMLQASDNPAAVNALINLSAELAEGSG-LQYRWFLEEGDDLETSEP----------------------------- 1744 (2740)
T ss_pred             EEcCceEEeccCCcccCCCeEEEEEEecCCCC-cEEEEEECCCCCcccCCC-----------------------------
Confidence            433333222 2233367899999877666555 79999875532 111110                             


Q ss_pred             cceEEEEEeecCCccceeEEEee--ccccceeeeeeccceeeeecchhccccceeeeee-eeeeeecCCeEEEEEEeecC
Q psy14542        173 SGELIIHQVDESDRYRSYQCRGV--NKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKH-RILNVKKDESVILPCSAQGN  249 (371)
Q Consensus       173 ~~~l~i~~~~~~d~~g~y~C~~~--~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~-~~~~~~~g~~~~l~C~~~~~  249 (371)
                        .+   .-+... .|.|...+.  |. .+....+.   .+.|.++.  ....+..... ....+..|..+.|.-.+...
T Consensus      1745 --~~---tHtf~~-~G~y~VtVta~N~-vss~~~s~---~V~VqepV--~GL~i~~~~~~~~~~~~ag~~v~F~a~vstG 1812 (2740)
T TIGR00864      1745 --FM---SHSFPS-AGLHLVTMKAFNE-LGSANASE---EVDVQEPI--SGLKIRAADAGEQNFFAADSSVCFQGELATG 1812 (2740)
T ss_pred             --ce---EEEccC-CceEEEEEEEEcc-ccccceeE---EEEEEecc--ccceEecCCCCcccceecCcEEEEEEEccCC
Confidence              00   001222 667766544  44 34333333   56665332  1112211111 11015567777777665544


Q ss_pred             CCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEE--EEcCCCCceeEEEEEEecCcccccccceEEEEeee
Q psy14542        250 PLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCV--ANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVD  327 (371)
Q Consensus       250 p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~--a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~  327 (371)
                      ....+.|..++..-..+..       ..   ....+.|.|+..  |.|..+....+..+.|+++...      +.+   .
T Consensus      1813 snVsw~W~f~~g~s~~gk~-------v~---~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~------L~L---~ 1873 (2740)
T TIGR00864      1813 TNVSWCWAIDGGSSKMGKH-------AC---MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFG------LEL---K 1873 (2740)
T ss_pred             CeeEEEEEeCCCCccccce-------eE---EecCCCeEEEEEEEEEcccCcceeeeeEEEEEecce------EEE---e
Confidence            4567889887653222211       11   345678999875  5799999888999999988861      111   1


Q ss_pred             eccccccccccccccceeeeeecCCeEEEeeeeecCCCCcccc
Q psy14542        328 EKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKY  370 (371)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W  370 (371)
                      . ...              .+..|+.++|.+.+...+...+.|
T Consensus      1874 a-s~~--------------~~~~n~~v~fsa~l~~GS~Vtf~w 1901 (2740)
T TIGR00864      1874 A-SKK--------------IAAIGEKVEFQILLAAGSAVNFRL 1901 (2740)
T ss_pred             c-ccc--------------cccCCCEEEEEEEecCCCceEEEE
Confidence            1 111              456788888888777655555555

Note: this model has been restricted to the amino half because for technical reasons.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.77  E-value=0.0003  Score=47.56  Aligned_cols=68  Identities=21%  Similarity=0.298  Sum_probs=43.3

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC---------C------eeEEEEccCCcCCCeE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN---------S------DEVLVLDRVQREDAGM   73 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~---------~------~~~l~i~~~~~~d~G~   73 (371)
                      +|.+.+.+..  ....|+..+|.|.+...+| ...+.|.+||..+...         .      ...|.+.   ..+...
T Consensus         1 ~P~V~v~~~~--~~~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~   75 (94)
T cd05767           1 PPEVTVFSLK--PVELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDI   75 (94)
T ss_pred             CCEEEEEeCC--cccCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCe
Confidence            3555555554  2345677899997777666 4579999999886542         1      2223333   344558


Q ss_pred             EEEEEEcCC
Q psy14542         74 YQCHVSADD   82 (371)
Q Consensus        74 Y~C~~~~~~   82 (371)
                      |+|.+....
T Consensus        76 ytC~V~H~~   84 (94)
T cd05767          76 YSCIVEHWG   84 (94)
T ss_pred             EEEEEEeCC
Confidence            888887654

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.77  E-value=0.0003  Score=49.29  Aligned_cols=85  Identities=18%  Similarity=0.305  Sum_probs=46.4

Q ss_pred             eecCCcEEEEEEecCCCCCceEEEeeCCEEee-eCCeeEEEEcccCcCCCeeEEEEEeCCceeEe-----ccceEEEEEe
Q psy14542        108 VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR-RNSDEVLVLDRVQREDAGMYQCHIEDGKYHML-----SSGELIIHQV  181 (371)
Q Consensus       108 ~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~-----~~~~l~i~~~  181 (371)
                      +.+|++++|.|.+........+.|++...... ....+.+......   ...|.-...+.++...     ....|+|.++
T Consensus         3 v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~---~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   79 (107)
T cd07700           3 VQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLG---GATYGEEVSQEKFSIRVTSDSSRYRLHINRV   79 (107)
T ss_pred             EcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCC---CeEEccccccCcEEEEEECCCCEEEEEECCC
Confidence            46899999999986543325899998433211 1111112111110   0000000011223221     1246999999


Q ss_pred             ecCCccceeEEEeec
Q psy14542        182 DESDRYRSYQCRGVN  196 (371)
Q Consensus       182 ~~~d~~g~y~C~~~~  196 (371)
                      +.+| +|.|.|....
T Consensus        80 ~~~D-sg~YyCa~~~   93 (107)
T cd07700          80 KPED-SGTYFCMTVG   93 (107)
T ss_pred             CHHH-CEEEEEeEcC
Confidence            9999 9999999753

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.76  E-value=0.00013  Score=44.75  Aligned_cols=51  Identities=20%  Similarity=0.473  Sum_probs=38.3

Q ss_pred             ecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEc
Q psy14542        235 KKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       235 ~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      ...+.+.|+|.+    ..+|.|++ |..+....     +.+|.+.....+-.|.|.|.+++
T Consensus         4 e~~~~V~L~C~~----~tsi~W~k-G~~~~~~~-----~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           4 ESEGKVFLKCNG----ATNITWKK-GKEILEVS-----NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             ecCceEEEEecC----CCcEEEec-Cccccccc-----ccEEeccCcccCCCcceEecCcc
Confidence            345679999965    25699999 55443321     56789999999999999999877

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.76  E-value=0.00019  Score=48.40  Aligned_cols=71  Identities=15%  Similarity=0.272  Sum_probs=49.3

Q ss_pred             EEEeCCCcEEEeccCcEEE-EEEecCCCCCCeeEEEeCCEEEe----eC-------CeeEEEEccCCcCCCeEEEEEEEc
Q psy14542         13 IEMSPSGQVVVDVGHRIEL-HCRVSPKRLSSAKAWLKDGLVLR----RN-------SDEVLVLDRVQREDAGMYQCHVSA   80 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l-~C~~~~~~~~~~~~W~~~~~~~~----~~-------~~~~l~i~~~~~~d~G~Y~C~~~~   80 (371)
                      +.+.+.....+.+|+.+.+ .|....+.|.+.|.|+.+.....    ..       -.+.|.+...+..|.-.++|.+.+
T Consensus         3 ~~~~~~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H   82 (97)
T cd07704           3 VSLSPGPSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSH   82 (97)
T ss_pred             cccCCCCeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeC
Confidence            4456666578889999999 99888999999999998622111    00       233455554455555599999987


Q ss_pred             CCC
Q psy14542         81 DDD   83 (371)
Q Consensus        81 ~~~   83 (371)
                      ..-
T Consensus        83 ~al   85 (97)
T cd07704          83 PAL   85 (97)
T ss_pred             ccc
Confidence            654

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.75  E-value=9.3e-05  Score=51.06  Aligned_cols=66  Identities=18%  Similarity=0.371  Sum_probs=41.9

Q ss_pred             eecCCeEEEEEEeecCCC--CceEEEeCCcccccCCc----eEEe---cc------eEEEeccCCCCCeEEEEEEEcCCC
Q psy14542        234 VKKDESVILPCSAQGNPL--PTIKWYKQDSPVEESDR----IQRI---GS------SLSISHVEESDSGVWNCVANNSEG  298 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~--~~v~W~~~~~~~~~~~~----~~~~---~~------~l~i~~~~~~d~G~Y~C~a~n~~g  298 (371)
                      +..+..++|.|.+.|+.+  ..++|+++|..+.....    ....   ++      .|.+..-...+...|+|++.+...
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l   92 (102)
T cd05768          13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL   92 (102)
T ss_pred             hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence            445678999999999544  35799999987653311    0011   23      355544444556789999987654


Q ss_pred             C
Q psy14542        299 Q  299 (371)
Q Consensus       299 ~  299 (371)
                      .
T Consensus        93 ~   93 (102)
T cd05768          93 P   93 (102)
T ss_pred             C
Confidence            3

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.73  E-value=0.00036  Score=47.38  Aligned_cols=63  Identities=21%  Similarity=0.378  Sum_probs=39.0

Q ss_pred             CCeEEEEEEeecC-CCC-ceEEEeCCcccccCC---ceE-EecceEE---EeccCCCCCeEEEEEEEcCCCC
Q psy14542        237 DESVILPCSAQGN-PLP-TIKWYKQDSPVEESD---RIQ-RIGSSLS---ISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       237 g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~---~~~-~~~~~l~---i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      ++.++|.|.+.|+ |.. .++|.++|..+..+.   ... ..++++.   .-.+...+.+.|+|++.+....
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~~   85 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGLK   85 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCCC
Confidence            6789999999995 443 799999986332221   111 1122221   1223345789999999876543

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.73  E-value=0.00036  Score=49.92  Aligned_cols=85  Identities=19%  Similarity=0.218  Sum_probs=47.5

Q ss_pred             ceeeecCCcEEEEEEecCCC-----CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe-----ccc
Q psy14542        105 QVVVDVGHRIELHCRVSPKR-----LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML-----SSG  174 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~-----~~~  174 (371)
                      ...+.+|+.++|.|......     ....+.|++....-.. ....+...... .....|     .+++.+.     .+.
T Consensus         8 ~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~-~~~~~~~~~~~-~~~~~f-----~gR~~~~~~~~~~~~   80 (119)
T cd05712           8 SVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKN-RPPVATNNRSR-LVHEST-----RGRFRLLGDLGKKNC   80 (119)
T ss_pred             EEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCC-CCcEEEcCCCc-cccccc-----cccEEEecCCCCCEE
Confidence            34448999999999875322     1256999985421100 01111111111 010111     1233321     235


Q ss_pred             eEEEEEeecCCccceeEEEeecc
Q psy14542        175 ELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      .|.|.+++.+| +|.|.|.+...
T Consensus        81 sL~I~~l~~~D-sg~Y~C~~~~~  102 (119)
T cd05712          81 SLLISDAQPED-SGKYFFRVELG  102 (119)
T ss_pred             EEEEccCChhh-CeEEEEEEEcC
Confidence            79999999999 99999988654

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.73  E-value=0.00017  Score=50.75  Aligned_cols=70  Identities=21%  Similarity=0.379  Sum_probs=45.1

Q ss_pred             eecCCeEEEEEEeecC-CC-CceEEEeCCcccccCCc---eE--------EecceEEEeccCCCC-CeEEEEEEEcCCCC
Q psy14542        234 VKKDESVILPCSAQGN-PL-PTIKWYKQDSPVEESDR---IQ--------RIGSSLSISHVEESD-SGVWNCVANNSEGQ  299 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~---~~--------~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~  299 (371)
                      ...++.++|.|.+.++ |. .+++|++||..+..+..   ..        ...+.|.+......+ ...|+|.+.+....
T Consensus        15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~   94 (115)
T cd05769          15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT   94 (115)
T ss_pred             hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence            3356678999999984 54 47999999987654321   01        112345555554444 56999999987665


Q ss_pred             ceeE
Q psy14542        300 DKMQ  303 (371)
Q Consensus       300 ~~~~  303 (371)
                      ....
T Consensus        95 ~~~~   98 (115)
T cd05769          95 DTDK   98 (115)
T ss_pred             ccee
Confidence            5433

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.72  E-value=9.4e-05  Score=45.08  Aligned_cols=52  Identities=23%  Similarity=0.382  Sum_probs=37.1

Q ss_pred             EeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEc
Q psy14542         23 VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSA   80 (371)
Q Consensus        23 ~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   80 (371)
                      -..|.+|+|+|...   . ..+.|++++..+.. ....+.+.+-. ++.|.|.|.+.+
T Consensus         4 sisGTtVtlTCP~~---~-~~i~W~~n~~~~~g-~~~~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           4 SISGTTVTVTCPLS---G-DDIKWKKNDQVSQG-SDEKYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             EEeccEEEEECCCC---C-CCceEEeCCccCCC-CCceEEeeccC-CCCceEEEEeCC
Confidence            34689999999322   1 22999999966654 33456666666 889999999953

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.71  E-value=0.0001  Score=50.89  Aligned_cols=43  Identities=23%  Similarity=0.322  Sum_probs=30.1

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCC-CeeEEEeCCEEEe
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLR   54 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~   54 (371)
                      .+.+.|.....+..|+.++|.|.+...+|. ..+.|++||..+.
T Consensus         2 ~v~l~~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~   45 (102)
T cd05768           2 SVYVLPPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLS   45 (102)
T ss_pred             eEEEeCcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECC
Confidence            445555542345567899999977766664 3689999998764

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.70  E-value=0.00027  Score=43.10  Aligned_cols=51  Identities=29%  Similarity=0.508  Sum_probs=36.9

Q ss_pred             ecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEc
Q psy14542        235 KKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       235 ~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      ..|.+|+|+|...+.   .+.|.+++..+...      +..+.+.+-. ++.|.|.|.+.+
T Consensus         5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~------~~~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGS------DEKYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             EeccEEEEECCCCCC---CceEEeCCccCCCC------CceEEeeccC-CCCceEEEEeCC
Confidence            468999999975522   39999998655542      2345555555 889999999954

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA03273 envelope glycoprotein C; Provisional

Probab=97.68  E-value=0.002  Score=55.28  Aligned_cols=113  Identities=20%  Similarity=0.161  Sum_probs=71.5

Q ss_pred             eEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCC--
Q psy14542        175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP--  252 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--  252 (371)
                      .|+|..++..+ +|.|+-...+. .+...... ...+...     .+|.+...+..   +..|+...-.|.+..+-++  
T Consensus       199 ~LtI~sltaaT-eGvYtWr~~~~-n~t~~~~~-~VtV~~y-----r~Psvsv~~~P---vL~Ge~y~A~C~aa~YYPp~S  267 (486)
T PHA03273        199 PLTIKSVDWRT-AGVYVWSLYAK-NGTLVNST-SVTVSTY-----NAPLVDLSVHP---SLKGENYRAVCVVASYFPHSS  267 (486)
T ss_pred             ceEEEecchhh-ceEEEEEEecC-CCceeeee-EEEEEEe-----cCCcccccCCc---cccCCCceEEEEeeeecCCCc
Confidence            49999999999 99999876554 33222222 1134445     67777766654   8899999999999875443  


Q ss_pred             -ceEEEeCCcccccCCce----E-E------ecceEEEeccC-CCCCeEEEEEEEcCCC
Q psy14542        253 -TIKWYKQDSPVEESDRI----Q-R------IGSSLSISHVE-ESDSGVWNCVANNSEG  298 (371)
Q Consensus       253 -~v~W~~~~~~~~~~~~~----~-~------~~~~l~i~~~~-~~d~G~Y~C~a~n~~g  298 (371)
                       .+.|++|+.++......    . .      ..++|.+.... .+.--+.+|.+.-...
T Consensus       268 v~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd  326 (486)
T PHA03273        268 VKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRD  326 (486)
T ss_pred             eEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccC
Confidence             59999999988732211    1 1      11234444322 2233478898764433

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.68  E-value=0.0012  Score=56.72  Aligned_cols=82  Identities=13%  Similarity=0.076  Sum_probs=58.4

Q ss_pred             ceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCC-
Q psy14542        174 GELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP-  252 (371)
Q Consensus       174 ~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-  252 (371)
                      -.|.|.+++..+ +|.|.-.+.+...+...... ...+.+.     ..|.+...+..   +..|+...-+|.+..+.++ 
T Consensus       289 ~pL~I~sltaAT-eGvY~Wrv~~~~n~t~~~~~-~VtV~~y-----r~PsVsV~p~P---VL~Ge~YkAtC~vA~YYPp~  358 (566)
T PHA03269        289 FSLHILSLDAST-EGTYIWRVIHTANKNVINEH-HITVMSY-----KRPNITVIGDP---VLLGNPYAAYCKVNKYYPPH  358 (566)
T ss_pred             cceEEeeccccc-CceEEEEEecCCCCceeeee-EEEEEEe-----cCCCccccCCc---cccCCCceEEEEeeeecCCC
Confidence            359999999999 99999887654222222222 1255555     67766666554   8899999999999875443 


Q ss_pred             --ceEEEeCCccccc
Q psy14542        253 --TIKWYKQDSPVEE  265 (371)
Q Consensus       253 --~v~W~~~~~~~~~  265 (371)
                        .+.|++|++++..
T Consensus       359 SvrlrWf~ng~~V~~  373 (566)
T PHA03269        359 SVIVKWTSNFGNIGK  373 (566)
T ss_pred             ceEEEEEeCCcccCc
Confidence              4999999988774

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.65  E-value=0.00037  Score=42.81  Aligned_cols=50  Identities=24%  Similarity=0.432  Sum_probs=38.0

Q ss_pred             ccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEc
Q psy14542         25 VGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSA   80 (371)
Q Consensus        25 ~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~   80 (371)
                      ..++|.|.|..     ..+|.|++ |..+....+.+|-+.+...+-.|.|.|.+.+
T Consensus         5 ~~~~V~L~C~~-----~tsi~W~k-G~~~~~~~~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           5 SEGKVFLKCNG-----ATNITWKK-GKEILEVSNTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             cCceEEEEecC-----CCcEEEec-CcccccccccEEeccCcccCCCcceEecCcc
Confidence            34679999943     25699999 4444433477899999999999999998865

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.64  E-value=0.00029  Score=47.95  Aligned_cols=63  Identities=16%  Similarity=0.310  Sum_probs=37.7

Q ss_pred             EEEeccCcEEEEEEecCC-CC-CCeeEEEeCCEEEee-C-------CeeEEEEc---cCCcC---CCeEEEEEEEcCCC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RL-SSAKAWLKDGLVLRR-N-------SDEVLVLD---RVQRE---DAGMYQCHVSADDD   83 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~-~~~~~W~~~~~~~~~-~-------~~~~l~i~---~~~~~---d~G~Y~C~~~~~~~   83 (371)
                      ..+..|+.++|.|.+... +| ...+.|+||+..... .       .++++.+.   .+..+   +.-.|.|.+.....
T Consensus         9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l   87 (96)
T cd07696           9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL   87 (96)
T ss_pred             HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence            446678999999977666 34 557999998743321 1       22223222   12222   23379999987654

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA02633 hypothetical protein; Provisional

Probab=97.64  E-value=0.00016  Score=43.14  Aligned_cols=38  Identities=16%  Similarity=0.318  Sum_probs=33.4

Q ss_pred             CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542         57 SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILG   94 (371)
Q Consensus        57 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   94 (371)
                      ....|+|-++..+|+|.|.|.+.+..-....++.|.|.
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~   53 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC   53 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence            55679999999999999999999887777888888887

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.61  E-value=0.00062  Score=45.12  Aligned_cols=69  Identities=22%  Similarity=0.391  Sum_probs=45.3

Q ss_pred             cCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccc
Q psy14542        110 VGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYR  188 (371)
Q Consensus       110 ~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g  188 (371)
                      .++.++|.|.+.++ |....+.|++++..+...........    ..+|         .|...  +.|.+.   ..+ ..
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~----~~dg---------ty~~~--s~l~v~---~~~-~~   67 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPP----NSDG---------TYSVT--SSLTVT---WNS-GD   67 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEE----ETTS---------EEEEE--EEEEEE---TTT-TG
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeeccccc----cccc---------ceeee--EEEEec---CCC-CC
Confidence            48899999999886 44578999999998765432211111    1333         33333  455555   555 77


Q ss_pred             eeEEEeecc
Q psy14542        189 SYQCRGVNK  197 (371)
Q Consensus       189 ~y~C~~~~~  197 (371)
                      .|+|.+.+.
T Consensus        68 ~ysC~V~H~   76 (83)
T PF07654_consen   68 EYSCRVTHE   76 (83)
T ss_dssp             GEEEEEEET
T ss_pred             EEEEEEEEC
Confidence            999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.61  E-value=0.0003  Score=47.82  Aligned_cols=66  Identities=15%  Similarity=0.225  Sum_probs=40.6

Q ss_pred             eecCCeEEEEEEeecC-CC--CceEEEeCCccccc-C--CceEEec------ceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        234 VKKDESVILPCSAQGN-PL--PTIKWYKQDSPVEE-S--DRIQRIG------SSLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~-p~--~~v~W~~~~~~~~~-~--~~~~~~~------~~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      +..|+.++|+|.+.|. .+  ..++|.++++.... .  ......+      +.|.+..-...+.-.|+|.+.+....
T Consensus        11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l~   88 (96)
T cd07696          11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDLP   88 (96)
T ss_pred             hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCCC
Confidence            5668889999999988 33  35899998753211 1  0011122      23444444444456899999887644

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.59  E-value=0.00038  Score=48.37  Aligned_cols=81  Identities=15%  Similarity=0.241  Sum_probs=46.6

Q ss_pred             eecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCc-------CCCeeEEEEEeCCceeEeccceEEEEE
Q psy14542        108 VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQR-------EDAGMYQCHIEDGKYHMLSSGELIIHQ  180 (371)
Q Consensus       108 ~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~-------~~~g~y~~~~~~~~~~~~~~~~l~i~~  180 (371)
                      +.+|++++|.|.+..... ..+.|++....-.......+.+.....       ...+.|.....      .....|.|.+
T Consensus         3 v~~G~~vtL~C~~~~~~~-~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~------~~~~~L~I~~   75 (104)
T cd05720           3 AELGQKVELKCEVLNSSP-TGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRS------SNSFVLTLKN   75 (104)
T ss_pred             ccCCCeEEEEEEecCCCC-CcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEec------CCEEEEEECC
Confidence            368999999999865533 579999855320011112222221100       01222221110      1235799999


Q ss_pred             eecCCccceeEEEeec
Q psy14542        181 VDESDRYRSYQCRGVN  196 (371)
Q Consensus       181 ~~~~d~~g~y~C~~~~  196 (371)
                      ++.+| +|.|.|.+..
T Consensus        76 ~~~sD-sgtY~Ca~~~   90 (104)
T cd05720          76 FQKEN-EGYYFCSVAS   90 (104)
T ss_pred             CCHHH-CEEEEEEEcc
Confidence            99999 9999998763

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.58  E-value=0.00079  Score=45.67  Aligned_cols=64  Identities=19%  Similarity=0.346  Sum_probs=41.5

Q ss_pred             CeEEEEEEee-cCCCCceEEEeCCcccccC------CceEEecceEEEeccCCCCCeEEEEEEEcCCCCce
Q psy14542        238 ESVILPCSAQ-GNPLPTIKWYKQDSPVEES------DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDK  301 (371)
Q Consensus       238 ~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  301 (371)
                      ....+.|.+. |+|.+.|+|+++.......      .......+.|.+.....+|+-.|+|++.|......
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~   86 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEP   86 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCC
Confidence            4467899984 7999999999972211111      01111224577766667777799999999875543

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>smart00406 IGv Immunoglobulin V-Type

Probab=97.58  E-value=8.7e-05  Score=48.97  Aligned_cols=22  Identities=36%  Similarity=0.708  Sum_probs=19.3

Q ss_pred             CeeEEEEccCCcCCCeEEEEEE
Q psy14542         57 SDEVLVLDRVQREDAGMYQCHV   78 (371)
Q Consensus        57 ~~~~l~i~~~~~~d~G~Y~C~~   78 (371)
                      ...+|.|.+++.+|+|.|.|.+
T Consensus        60 ~~~~L~i~~~~~~D~G~Y~C~v   81 (81)
T smart00406       60 NDVSLTISNLRVEDTGTYYCAV   81 (81)
T ss_pred             CEEEEEEcCCCHHHCEEEEEcC
Confidence            4478999999999999999964

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.56  E-value=0.009  Score=50.57  Aligned_cols=115  Identities=13%  Similarity=0.114  Sum_probs=66.6

Q ss_pred             ceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCC-
Q psy14542        174 GELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP-  252 (371)
Q Consensus       174 ~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-  252 (371)
                      -.+.|.++...+ +|.|+....+.........  .+.+.+..    .+|.+...+..   +..|+...-+|.+..+-++ 
T Consensus       207 m~v~I~svD~~t-~Gy~~v~~~d~~N~~i~e~--~~~~~v~~----RPPsVsV~a~P---VL~Ge~YkAtC~vAnYYPP~  276 (490)
T PHA03271        207 MGVEIRNVDYAD-NGYIQVIMRDPFNRPLLDK--HIYIRVCQ----RPASVDVLAPP---VLSGENYKASCIVRHFYPPG  276 (490)
T ss_pred             eeEEEEEeeccc-ceEEEEEecCCCCCccccc--eEEEEEEe----cCCCccccCCc---cccCCCceEEEEeeeecCCC
Confidence            368899999999 9977555444311111111  11333331    45656665554   8899999999999875443 


Q ss_pred             --ceEEEeCCcccccCCceE------------EecceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542        253 --TIKWYKQDSPVEESDRIQ------------RIGSSLSISHVEESDSGVWNCVANNSEG  298 (371)
Q Consensus       253 --~v~W~~~~~~~~~~~~~~------------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  298 (371)
                        .+.|++||..+.......            ..-++|.+.+...+.--+.+|.+.-..+
T Consensus       277 SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd  336 (490)
T PHA03271        277 SVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQG  336 (490)
T ss_pred             ceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccC
Confidence              499999998764432111            0112333333322333488898865444

>smart00406 IGv Immunoglobulin V-Type

Probab=97.52  E-value=0.00057  Score=44.99  Aligned_cols=75  Identities=16%  Similarity=0.276  Sum_probs=40.3

Q ss_pred             cEEEEEEecCCCCC-ceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe-----ccceEEEEEeecCCc
Q psy14542        113 RIELHCRVSPKRLS-SAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML-----SSGELIIHQVDESDR  186 (371)
Q Consensus       113 ~v~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~-----~~~~l~i~~~~~~d~  186 (371)
                      +++|.|.+...... ..+.|++....  ..........    .....+.-....+++...     ....|.|.+++.+| 
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~--~~~~~l~~~~----~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D-   73 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPG--KGLEWLGYIG----SSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVED-   73 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCC--CCeEEEEEEc----CCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHH-
Confidence            47899998765431 37999986531  1111111111    001111100112233222     22579999999999 


Q ss_pred             cceeEEEe
Q psy14542        187 YRSYQCRG  194 (371)
Q Consensus       187 ~g~y~C~~  194 (371)
                      +|.|.|.+
T Consensus        74 ~G~Y~C~v   81 (81)
T smart00406       74 TGTYYCAV   81 (81)
T ss_pred             CEEEEEcC
Confidence            99999964

>PHA02982 hypothetical protein; Provisional

Probab=97.51  E-value=0.0019  Score=48.99  Aligned_cols=111  Identities=15%  Similarity=0.339  Sum_probs=73.2

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeC-CEEEeeC---------------------------CeeEEEEccCCcCCCe
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKD-GLVLRRN---------------------------SDEVLVLDRVQREDAG   72 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~-~~~~~~~---------------------------~~~~l~i~~~~~~d~G   72 (371)
                      +....|++|.|.|....+....+..|+++ +..+...                           ..++|+|.++..+..|
T Consensus        34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G  113 (251)
T PHA02982         34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG  113 (251)
T ss_pred             hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence            45678999999997555555567899984 3344421                           6789999999999999


Q ss_pred             EEEEEEEcCCCCe-EEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEE
Q psy14542         73 MYQCHVSADDDSA-QMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLV  137 (371)
Q Consensus        73 ~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~  137 (371)
                      -|+|++....+.. ...-.|.|......+...     .-...-.+.|-+..... .-..|.-+|..
T Consensus       114 CYtc~~ks~~~k~E~c~kCl~V~~~~V~~~W~-----e~nNeT~V~CyVgS~~~-dvp~W~V~GVv  173 (251)
T PHA02982        114 CFTCEAKDAEGKEETCEKCLEIQKEDILYVVE-----EHNNETIITCFVGSKHG-DVPRFIVAGIV  173 (251)
T ss_pred             ceEEEEecCCCchheeheeeeEecceEEEEEE-----ecCCeEEEEEEEEeccC-CCccEEEeeEE
Confidence            9999999866554 336667763122222111     12223466898866544 22388877764

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.47  E-value=0.0012  Score=44.66  Aligned_cols=69  Identities=16%  Similarity=0.257  Sum_probs=44.0

Q ss_pred             CeEEEEEEee-cCCCCceEEEeCCcccccCCc------eEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542        238 ESVILPCSAQ-GNPLPTIKWYKQDSPVEESDR------IQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI  306 (371)
Q Consensus       238 ~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  306 (371)
                      ....+.|.+. |.|.+.|+|+++.........      .....+.|.+.....+|+..|+|++.|........+.+
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~   91 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV   91 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence            3478999876 689999999987322111110      01122457776666777789999999987654444433

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.45  E-value=0.00054  Score=46.44  Aligned_cols=60  Identities=12%  Similarity=0.160  Sum_probs=37.6

Q ss_pred             EEeccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC---------CeeEEEEc---cCCcCCCe-EEEEEEEcCC
Q psy14542         22 VVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN---------SDEVLVLD---RVQREDAG-MYQCHVSADD   82 (371)
Q Consensus        22 ~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~---------~~~~l~i~---~~~~~d~G-~Y~C~~~~~~   82 (371)
                      .+..++.++|.|.+...+| ...+.|++||..+..+         .+ ++.+.   .+..++.| .|+|.+....
T Consensus        12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~d-ty~~~S~L~vt~~~~~~~ysC~V~H~g   85 (96)
T cd07697          12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDND-VYSTTSWLTVTKDSLGKKFRCIYKHEG   85 (96)
T ss_pred             HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCC-EEEEEEEEEECchhCCCeEEEEEEECC
Confidence            4555678999997766566 4569999999876433         11 22221   22333234 5999998744

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.45  E-value=0.0013  Score=44.69  Aligned_cols=59  Identities=12%  Similarity=0.130  Sum_probs=39.3

Q ss_pred             CcEEEEEEecCCCCCCeeEEEeC--CEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542         27 HRIELHCRVSPKRLSSAKAWLKD--GLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSA   85 (371)
Q Consensus        27 ~~v~l~C~~~~~~~~~~~~W~~~--~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   85 (371)
                      ....+.|....++|.+.|.|+++  +......         ..+.|.+.....+|.-.|+|++.+.....
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~   85 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQE   85 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence            45788998778999999999996  2211111         23456665444444459999999876444

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.45  E-value=0.0012  Score=47.01  Aligned_cols=87  Identities=16%  Similarity=0.297  Sum_probs=47.2

Q ss_pred             CceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEE
Q psy14542        104 NQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELI  177 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~  177 (371)
                      ....+.+|++++|.|...... ....+.|++-..  .......+.+.......  .+ .....+++....     ...|.
T Consensus         5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~--g~~p~~l~~~~~~~~~~--~~-~~~~~~rf~~~~~~~~~~~~L~   79 (117)
T cd04981           5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAP--GKGLEWIGFINPGGGET--YY-ADSVKGRFTITRDTSKSTVYLQ   79 (117)
T ss_pred             CCeEEcCCCCEEEEEEEeCCCcccceEEEEEECC--CCCcEEEEEEecCCCce--Ee-CcccCCcEEEEEEccCCEEEEE
Confidence            344558999999999876432 125799998432  11111112221110000  00 000012333221     13699


Q ss_pred             EEEeecCCccceeEEEeec
Q psy14542        178 IHQVDESDRYRSYQCRGVN  196 (371)
Q Consensus       178 i~~~~~~d~~g~y~C~~~~  196 (371)
                      |.++..+| +|.|.|.+..
T Consensus        80 I~~~~~~D-sa~YyCa~~~   97 (117)
T cd04981          80 LNSLTPED-TAVYYCARGL   97 (117)
T ss_pred             ECCCCHHH-CEEEEEEEEc
Confidence            99999999 9999998764

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.44  E-value=0.0015  Score=45.34  Aligned_cols=62  Identities=15%  Similarity=0.247  Sum_probs=43.1

Q ss_pred             eCCCcEEEeccCcEEEEEEecCCC-CC-CeeEEEeC--CE-EEee-----------C------------CeeEEEEccCC
Q psy14542         16 SPSGQVVVDVGHRIELHCRVSPKR-LS-SAKAWLKD--GL-VLRR-----------N------------SDEVLVLDRVQ   67 (371)
Q Consensus        16 ~p~~~~~~~~G~~v~l~C~~~~~~-~~-~~~~W~~~--~~-~~~~-----------~------------~~~~l~i~~~~   67 (371)
                      ++.. ..+..|+.++|.|+.+... .. ..+.|+|.  +. +...           .            ...+|.|.+++
T Consensus         4 ~~~~-~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~   82 (115)
T cd05721           4 QQSP-VLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLR   82 (115)
T ss_pred             ecCC-eEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCC
Confidence            3444 7889999999999764322 22 45888872  21 1000           0            56789999999


Q ss_pred             cCCCeEEEEEE
Q psy14542         68 REDAGMYQCHV   78 (371)
Q Consensus        68 ~~d~G~Y~C~~   78 (371)
                      .+|++.|.|..
T Consensus        83 a~DTa~Y~Ca~   93 (115)
T cd05721          83 ANQTDIYFCKI   93 (115)
T ss_pred             HHHCeEEEEEe
Confidence            99999999976

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.44  E-value=0.00052  Score=46.59  Aligned_cols=64  Identities=19%  Similarity=0.279  Sum_probs=39.8

Q ss_pred             eecCCeEEEEEEeecCC--C-CceEEEeCCcccccC--Cce------EEecceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542        234 VKKDESVILPCSAQGNP--L-PTIKWYKQDSPVEES--DRI------QRIGSSLSISHVEESDSGVWNCVANNSEG  298 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p--~-~~v~W~~~~~~~~~~--~~~------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  298 (371)
                      ...++.++|+|.+.++.  . ..|.|.++|+. ...  ...      ....+.|.+..-.......|+|.+.+...
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l   90 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG   90 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence            44678899999999844  2 46999999874 110  000      11123455544344445679999987654

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.43  E-value=0.0011  Score=45.09  Aligned_cols=61  Identities=20%  Similarity=0.341  Sum_probs=38.5

Q ss_pred             cCCeEEEEEEeecCCC--CceEEEeCCcccccCC----ceEEecc------eEEEeccCCCCCeEEEEEEEcCC
Q psy14542        236 KDESVILPCSAQGNPL--PTIKWYKQDSPVEESD----RIQRIGS------SLSISHVEESDSGVWNCVANNSE  297 (371)
Q Consensus       236 ~g~~~~l~C~~~~~p~--~~v~W~~~~~~~~~~~----~~~~~~~------~l~i~~~~~~d~G~Y~C~a~n~~  297 (371)
                      .++.++|.|.+.|+.+  ..++|.+||.. ..+.    .....++      .|.+..........|+|++.+..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            4567899999998544  46899999986 3221    1111122      35554443334668999998865

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=97.42  E-value=0.06  Score=45.55  Aligned_cols=171  Identities=15%  Similarity=0.196  Sum_probs=88.1

Q ss_pred             ecCCcEEEEEEecC--CCCCceEEEeeCCEEeeeCCee-----EEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEe
Q psy14542        109 DVGHRIELHCRVSP--KRLSSAKAWLKDGLVLRRNSDE-----VLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQV  181 (371)
Q Consensus       109 ~~g~~v~l~C~~~~--~~~~~~v~W~~~~~~~~~~~~~-----~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~  181 (371)
                      ..|..+.|.|.+.-  ........|+-.+-++..--..     ......  .++. .|...+......-...++|+|.++
T Consensus       277 ~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~--~~~~-~~~i~~~~~~s~dlk~STLTIkka  353 (500)
T PHA02914        277 EVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDF--AEDD-DFMISAHANYSDDLKNSTLTIKKA  353 (500)
T ss_pred             ccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeeccc--ccCC-ceEEEEecccccchhhceEEeeeE
Confidence            56899999998853  2222678898766544321100     111111  1111 122211111222234579999999


Q ss_pred             ecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeec-CCeEEEEEEeecC--CCCceEEEe
Q psy14542        182 DESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKK-DESVILPCSAQGN--PLPTIKWYK  258 (371)
Q Consensus       182 ~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~-g~~~~l~C~~~~~--p~~~v~W~~  258 (371)
                      ..+. .|-|.|++... .-......   -+.|..     ...+.       +-.. .......|-+...  .++++.|.-
T Consensus       354 ~I~N-~GCY~~~a~~g-~~~~ec~~---Cl~V~d-----~V~f~-------W~~e~~n~T~V~Cyv~sy~~kp~si~wkv  416 (500)
T PHA02914        354 HINN-AGCYEAQAFMG-KFKEECRH---CFKVAD-----HVFFK-------WNTEGDNETKVACYAAQYDMQPFSILWKS  416 (500)
T ss_pred             EEEc-CCceEEEEecC-cchhhhhh---heEecc-----EEEEE-------EEeccCceEEEEEEEEecccCCceeEEEE
Confidence            9999 99999999855 22222222   343431     11111       1222 2334578987543  446799998


Q ss_pred             CCcccccCC-----ceE---E---ecceEEEeccCCCC-CeEEEEEEEcCCCC
Q psy14542        259 QDSPVEESD-----RIQ---R---IGSSLSISHVEESD-SGVWNCVANNSEGQ  299 (371)
Q Consensus       259 ~~~~~~~~~-----~~~---~---~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~  299 (371)
                      +|.......     ...   .   ..+.|.|.+-...| --.-.|+.....|-
T Consensus       417 nGV~~~G~~~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~Y  469 (500)
T PHA02914        417 NGVSFGGEIADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQGY  469 (500)
T ss_pred             ccEEecCeecCcccccccccccccceEEEEEecccCccccccceEEEecCCCc
Confidence            775332111     000   0   11356676666566 45677887665554

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.42  E-value=0.0013  Score=43.58  Aligned_cols=63  Identities=24%  Similarity=0.383  Sum_probs=42.6

Q ss_pred             eecCCeEEEEEEeecC-CCC-ceEEEeCCcccccCCceE----Eec------ceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        234 VKKDESVILPCSAQGN-PLP-TIKWYKQDSPVEESDRIQ----RIG------SSLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~----~~~------~~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      ...++.++|.|.+.++ |.. .|.|+++|..+.......    ..+      +.|.+.   ..+...|+|++.+....
T Consensus         5 ~~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~   79 (83)
T PF07654_consen    5 EELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP   79 (83)
T ss_dssp             HHSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred             ccCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence            3458889999999984 443 699999998765442211    122      235554   56677999999887654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.39  E-value=0.0008  Score=45.53  Aligned_cols=64  Identities=11%  Similarity=0.045  Sum_probs=41.7

Q ss_pred             cEEEEEEecCCCCCCeeEEEeCCEEE--eeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEE
Q psy14542         28 RIELHCRVSPKRLSSAKAWLKDGLVL--RRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV   91 (371)
Q Consensus        28 ~v~l~C~~~~~~~~~~~~W~~~~~~~--~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   91 (371)
                      -+.+.|....+.|.+.|.|+++....  ...         ..+.|.+.....+|...|+|++.+........+.+
T Consensus        17 ~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~   91 (95)
T cd07703          17 VPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV   91 (95)
T ss_pred             cEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence            57899988889999999999972111  110         13356665444445559999999876554444433

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.33  E-value=0.0016  Score=44.22  Aligned_cols=33  Identities=6%  Similarity=-0.086  Sum_probs=25.9

Q ss_pred             ecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeC
Q psy14542        109 DVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRN  141 (371)
Q Consensus       109 ~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~  141 (371)
                      ..+..++|.|.+.++ |....++|.++|..+..+
T Consensus        14 ~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~   47 (96)
T cd07697          14 EKQGQGIYLCLLENFFPDVIQVHWREGNSPSILG   47 (96)
T ss_pred             ccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCC
Confidence            345678999999986 555889999999976543

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.33  E-value=0.0021  Score=43.40  Aligned_cols=66  Identities=18%  Similarity=0.325  Sum_probs=44.3

Q ss_pred             eecCCeEEE-EEEee-cCCCCceEEEeCCcccccCCc------eEEecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        234 VKKDESVIL-PCSAQ-GNPLPTIKWYKQDSPVEESDR------IQRIGSSLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       234 ~~~g~~~~l-~C~~~-~~p~~~v~W~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      +..|..+.+ .|.+. |.|.+.|+|+.+.........      ...-.+.|.+...+.+|.-.++|++.+..-.
T Consensus        13 ~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~   86 (97)
T cd07704          13 IDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ   86 (97)
T ss_pred             eecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence            677888888 89864 689999999987433221110      1112235666666677888999999987543

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=97.32  E-value=0.00057  Score=48.48  Aligned_cols=72  Identities=13%  Similarity=0.189  Sum_probs=44.6

Q ss_pred             EEeccCcEEEEEEecC----CCCCCeeEEEeCCEEEeeC----------------------CeeEEEEccCCcCCCeEEE
Q psy14542         22 VVDVGHRIELHCRVSP----KRLSSAKAWLKDGLVLRRN----------------------SDEVLVLDRVQREDAGMYQ   75 (371)
Q Consensus        22 ~~~~G~~v~l~C~~~~----~~~~~~~~W~~~~~~~~~~----------------------~~~~l~i~~~~~~d~G~Y~   75 (371)
                      ...-++.|.|+|.+..    ..+...+.|..+|..+-.-                      ++.+|.+...+.- .|.|+
T Consensus        23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT  101 (130)
T PF08204_consen   23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT  101 (130)
T ss_dssp             E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred             EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence            3445789999996543    1223459999988876433                      2344777764444 89999


Q ss_pred             EEEEcCCCCeEEEEEEEEe
Q psy14542         76 CHVSADDDSAQMSAQVILG   94 (371)
Q Consensus        76 C~~~~~~~~~~~~~~l~v~   94 (371)
                      |.+.....+.+..+.|...
T Consensus       102 CeVt~~~~ege~~i~Lk~~  120 (130)
T PF08204_consen  102 CEVTELSREGETTIELKYR  120 (130)
T ss_dssp             EEEEETTEEEEEEEEEEE-
T ss_pred             EEEEecCCCceEEEEEEEE
Confidence            9999877777777777664

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.30  E-value=0.002  Score=43.76  Aligned_cols=41  Identities=7%  Similarity=0.009  Sum_probs=28.2

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEeCCEE
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLV   52 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~   52 (371)
                      |+|...++. ..-..++.++|.|.+...+| ...+.|++||..
T Consensus         2 P~v~~l~~~-~~~~~~~~~~L~C~a~gFyP~~i~vtW~k~g~~   43 (95)
T cd04985           2 PTVFPLVPC-CSSSSSDSVTLGCLATGFLPEPVTFTWNSGSNS   43 (95)
T ss_pred             CeEEEeCCC-ccccCCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence            455555554 22335678999997766565 456999999996

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.25  E-value=0.00098  Score=45.28  Aligned_cols=43  Identities=19%  Similarity=0.271  Sum_probs=31.1

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCC-C-CCeeEEEeCCEE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKR-L-SSAKAWLKDGLV   52 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~-~-~~~~~W~~~~~~   52 (371)
                      +|++.+.|+.......++.++|.|.+...+ | ...+.|.++|..
T Consensus         3 ~PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~   47 (99)
T cd04986           3 KPSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK   47 (99)
T ss_pred             CCEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence            466777765534455788999999776655 4 457999998764

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.19  E-value=0.0021  Score=43.15  Aligned_cols=65  Identities=14%  Similarity=0.231  Sum_probs=42.8

Q ss_pred             eecCCeEEEEEEeec-CCC--CceEEEeCCcccccCCceE--------EecceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542        234 VKKDESVILPCSAQG-NPL--PTIKWYKQDSPVEESDRIQ--------RIGSSLSISHVEESDSGVWNCVANNSEG  298 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~-~p~--~~v~W~~~~~~~~~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  298 (371)
                      +..|..+++.|.+.+ +|.  ..+.|++....+.......        .....+.+.....+|.-+|+|+|....+
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L~l~   87 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLHID   87 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEEEeec
Confidence            678999999999975 555  5699998665544332111        1224566666555455599999975544

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PHA02633 hypothetical protein; Provisional

Probab=97.15  E-value=0.0016  Score=39.01  Aligned_cols=41  Identities=22%  Similarity=0.321  Sum_probs=35.1

Q ss_pred             cceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542        273 GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       273 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      +..|-|-++..+|+|.|.|...|..-....++.|.|.....
T Consensus        17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~~   57 (63)
T PHA02633         17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRIE   57 (63)
T ss_pred             cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeeccc
Confidence            45688899999999999999999888888888888876554

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.10  E-value=0.0044  Score=43.03  Aligned_cols=82  Identities=13%  Similarity=0.177  Sum_probs=48.3

Q ss_pred             ceeeecCCcEEEEEEecCCCCC--ceEEEeeCCEEeeeCCeeEEEEc---ccCcCCCeeEEEEEeCCceeEeccceEEEE
Q psy14542        105 QVVVDVGHRIELHCRVSPKRLS--SAKAWLKDGLVLRRNSDEVLVLD---RVQREDAGMYQCHIEDGKYHMLSSGELIIH  179 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~---~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~  179 (371)
                      ...+..|..++|.|.+.+....  ..+.|.|.....   -.....+.   +......+.++|..+....    ...|.+.
T Consensus         7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~---lE~c~~~~~~g~~~~~~~~r~tcs~~~s~n----tv~L~l~   79 (115)
T cd05721           7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSA---VEVCAVTGNMSNQLQTSLDGFNCDGTLGNE----QVNFTLQ   79 (115)
T ss_pred             CeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCC---cEEEEEEeCCCccccccCCCeEEeEeCCCC----EEEEEEc
Confidence            4445788899999999775432  478998832211   01111111   1111223444444433322    2579999


Q ss_pred             EeecCCccceeEEEe
Q psy14542        180 QVDESDRYRSYQCRG  194 (371)
Q Consensus       180 ~~~~~d~~g~y~C~~  194 (371)
                      +++.+| .+.|.|..
T Consensus        80 ~L~a~D-Ta~Y~Ca~   93 (115)
T cd05721          80 NLRANQ-TDIYFCKI   93 (115)
T ss_pred             CCCHHH-CeEEEEEe
Confidence            999999 99999964

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>KOG1480|consensus

Probab=97.10  E-value=0.00053  Score=62.23  Aligned_cols=76  Identities=24%  Similarity=0.504  Sum_probs=57.2

Q ss_pred             eecCCeEEEEEEe-ecCCCCceEEEeCCcccccCCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCc---eeEEEEEE
Q psy14542        234 VKKDESVILPCSA-QGNPLPTIKWYKQDSPVEESDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQD---KMQLFIQY  308 (371)
Q Consensus       234 ~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~---~~~~~l~v  308 (371)
                      |..+....+.|.. .+.|...+.|++++..+.+...+. .....+++..++..|.|+|+|+|.|-.+..   ...+.+.|
T Consensus       141 V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv  220 (909)
T KOG1480|consen  141 VQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYV  220 (909)
T ss_pred             ecccccccccccCcccchhhhhhccccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhhccccccceEEEEEE
Confidence            7778888888885 577888899999998877643333 334568999999999999999999987753   34444444


Q ss_pred             e
Q psy14542        309 A  309 (371)
Q Consensus       309 ~  309 (371)
                      .
T Consensus       221 ~  221 (909)
T KOG1480|consen  221 N  221 (909)
T ss_pred             c
Confidence            4

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.05  E-value=0.0043  Score=41.69  Aligned_cols=58  Identities=17%  Similarity=0.281  Sum_probs=42.2

Q ss_pred             EeccCcEEEEEEecCCCCC--CeeEEEeCCEEEeeC-------------CeeEEEEccCCcCCCe-EEEEEEEcC
Q psy14542         23 VDVGHRIELHCRVSPKRLS--SAKAWLKDGLVLRRN-------------SDEVLVLDRVQREDAG-MYQCHVSAD   81 (371)
Q Consensus        23 ~~~G~~v~l~C~~~~~~~~--~~~~W~~~~~~~~~~-------------~~~~l~i~~~~~~d~G-~Y~C~~~~~   81 (371)
                      +.+|..+++.|.+....|.  ..+.|+++...+...             ....+.+.. +.+|.| .|.|.|...
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~   85 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLH   85 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEe
Confidence            5899999999988877776  679999977654432             223455554 477877 999999643

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>KOG1480|consensus

Probab=96.95  E-value=0.00043  Score=62.83  Aligned_cols=162  Identities=21%  Similarity=0.347  Sum_probs=93.0

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCC---CCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCe---E
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKR---LSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAG---M   73 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~---~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G---~   73 (371)
                      -+.+...|.+ .++..|.++.|.|......   ....-.|..+.+.....          ......|..-..++.|   .
T Consensus        24 l~~~~~~p~~-~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d  102 (909)
T KOG1480|consen   24 LPHFTTEPKS-AYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPED  102 (909)
T ss_pred             cceeeecCCc-cceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccc
Confidence            4678888988 8999999999999543221   12234566544332221          2223444444444433   4


Q ss_pred             EEEE--EEcCCCCeE-EEEEEEEecceeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEc
Q psy14542         74 YQCH--VSADDDSAQ-MSAQVILGGELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLD  149 (371)
Q Consensus        74 Y~C~--~~~~~~~~~-~~~~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~  149 (371)
                      |.|+  +....|... ....+.+......+...+. ..+..+..+.+.|......+...+.|++++..+....       
T Consensus       103 ~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~-------  175 (909)
T KOG1480|consen  103 YWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDA-------  175 (909)
T ss_pred             eeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccc-------
Confidence            6555  444444211 1111111112222333333 2346788889999986544338899999987665522       


Q ss_pred             ccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        150 RVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       150 ~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                                       .........+++..++..| .|.|+|++.|.
T Consensus       176 -----------------n~~~~~d~~li~~~arlsd-~~nytc~a~ni  205 (909)
T KOG1480|consen  176 -----------------NVIRASDHNLIISQARLSD-SGNYTCEATNI  205 (909)
T ss_pred             -----------------cchhhhcCCccccchhhhh-cccceeeeehh
Confidence                             1112223568888888888 89999988887

>KOG0613|consensus

Probab=96.87  E-value=0.0029  Score=61.23  Aligned_cols=116  Identities=12%  Similarity=0.125  Sum_probs=77.1

Q ss_pred             eecCCeEEEEEEeecCCCCc-eEEEeCCcccccCCce------EEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPT-IKWYKQDSPVEESDRI------QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI  306 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  306 (371)
                      +..+..+.+.|...+.+.+. +.|++++.....+...      ......+.|..+...+.+.|.|.|.|..|........
T Consensus       346 a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~  425 (1205)
T KOG0613|consen  346 ARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAES  425 (1205)
T ss_pred             cccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchh
Confidence            66677899999999888877 9999877654443211      1233468888999999999999999999986555444


Q ss_pred             EEecCcccccccceEEEEeeeeccccccccccccccceeeeeecC--CeEEEeeeeecCCCCcccc
Q psy14542        307 QYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKD--ESVILPCSAQGNPLPTIKY  370 (371)
Q Consensus       307 ~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~l~C~~~g~p~p~i~W  370 (371)
                      .|.+.+.         -           ..|.++-.+.+....++  +.+.+.|.+.+++.| +.|
T Consensus       426 ~vs~~~~---------g-----------t~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~-~~~  470 (1205)
T KOG0613|consen  426 TVSEEMP---------G-----------TQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMP-MTT  470 (1205)
T ss_pred             hcccccC---------C-----------CCCccccccccccccccCCcccccccCCCCcccc-cee
Confidence            4443333         0           01122223333345555  788888988888766 444

>KOG0613|consensus

Probab=96.68  E-value=0.015  Score=56.51  Aligned_cols=245  Identities=11%  Similarity=0.082  Sum_probs=136.8

Q ss_pred             EEEEEEecCCCCCCeeEEEeCCEEEeeC------------------------------------------CeeEEEEccC
Q psy14542         29 IELHCRVSPKRLSSAKAWLKDGLVLRRN------------------------------------------SDEVLVLDRV   66 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~------------------------------------------~~~~l~i~~~   66 (371)
                      +.+.|  ..+.|.+...|+.+|..+..+                                          +..++.|.+.
T Consensus       208 v~~v~--s~gqp~~~~~~~~~g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~~~~~~t~~i~~~  285 (1205)
T KOG0613|consen  208 VRAVV--SAGQPEPLERWEILGELIAPGSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRKHKGGNTKTIQND  285 (1205)
T ss_pred             EEEEE--ecCCCccchhhhhcccccCCCCccccccccchhheeeeEEeecCCCchHHHHhcchhhhcccCCCcccccccc
Confidence            44445  356777888898887766554                                          3334556666


Q ss_pred             CcCCCeEEEEEEEcCCCCeEEEEEEEEec---------------ceeeEec----CCceeeecCCcEEEEEEecCCCCCc
Q psy14542         67 QREDAGMYQCHVSADDDSAQMSAQVILGG---------------ELVEIAS----SNQVVVDVGHRIELHCRVSPKRLSS  127 (371)
Q Consensus        67 ~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~---------------~~~~~~~----~~~~~~~~g~~v~l~C~~~~~~~~~  127 (371)
                      ...+.+.|+|...+..++....+...+..               .++....    ........+..+++.|...+...+-
T Consensus       286 ~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~  365 (1205)
T KOG0613|consen  286 GPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPD  365 (1205)
T ss_pred             CCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCc
Confidence            66777888888877776665443333321               1111111    1111225567889999988887745


Q ss_pred             eEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeec
Q psy14542        128 AKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVN  207 (371)
Q Consensus       128 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~  207 (371)
                      .+.|++++..............+                   ...+..+.|..+...+ .+.|.|.+.|. .|...... 
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~-------------------~~ts~~~~~~~~~~~e-~~~~~~~a~n~-~g~~~~~~-  423 (1205)
T KOG0613|consen  366 EAQGYHGEEVSSESLGALPCPVG-------------------TVTSHTYTIKDAGPGE-GYFTRVPAVNK-GGTEQTIA-  423 (1205)
T ss_pred             hheeecccccccccccccccccc-------------------cccCcchhhhhcCccc-ccccccceecc-CCcccccc-
Confidence            59999877655443321111100                   0111467788888999 99999999998 66544443 


Q ss_pred             cceeeeecchhccccceeeeeeeee-eeecCCeEEEEEEeecCCCC--ceEEEeCCcccccCCc-e-EEecceEEEeccC
Q psy14542        208 RGRLSLTENKRLLSAAKMFEKHRIL-NVKKDESVILPCSAQGNPLP--TIKWYKQDSPVEESDR-I-QRIGSSLSISHVE  282 (371)
Q Consensus       208 ~~~l~v~~~~~~~~p~~~~~~~~~~-~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~-~-~~~~~~l~i~~~~  282 (371)
                        ...+........+.......... .+..-+.+.+.|...+.+.+  .++|++++.+...... . ...-.+|.+....
T Consensus       424 --~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s~~l~r~~~tslLlk~~~  501 (1205)
T KOG0613|consen  424 --ESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRSVTLTRDVLTSLLLKVAS  501 (1205)
T ss_pred             --hhhcccccCCCCCccccccccccccccCCcccccccCCCCccccceeEeeccCCcccccccccccccchhhheeeccC
Confidence              33344322222222222222222 12233778888988877755  3455555443322111 0 0122357777778


Q ss_pred             CCCCeEEEEEEEcCCCC
Q psy14542        283 ESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       283 ~~d~G~Y~C~a~n~~g~  299 (371)
                      ..|+|.|.-......+.
T Consensus       502 ~~~~A~~~~a~~~~~~k  518 (1205)
T KOG0613|consen  502 LSDGAQYTRALRTLQGK  518 (1205)
T ss_pred             CCccchhhhhhhccCCC
Confidence            88888886655544444

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.55  E-value=0.0016  Score=46.19  Aligned_cols=76  Identities=14%  Similarity=0.323  Sum_probs=44.3

Q ss_pred             eecCCeEEEEEEeecC-----CCCceEEEeCCcccccCC----ce-------------EEecceEEEeccCCCCCeEEEE
Q psy14542        234 VKKDESVILPCSAQGN-----PLPTIKWYKQDSPVEESD----RI-------------QRIGSSLSISHVEESDSGVWNC  291 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~-----p~~~v~W~~~~~~~~~~~----~~-------------~~~~~~l~i~~~~~~d~G~Y~C  291 (371)
                      ..-.+++.|.|.+..-     +...+.|..+|..+..-.    +.             ...+.+|.+.....- .|+|+|
T Consensus        24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC  102 (130)
T PF08204_consen   24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC  102 (130)
T ss_dssp             -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred             EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence            5667899999998642     223589998877542110    00             011235777765444 899999


Q ss_pred             EEEcCCCCceeEEEEEEec
Q psy14542        292 VANNSEGQDKMQLFIQYAH  310 (371)
Q Consensus       292 ~a~n~~g~~~~~~~l~v~~  310 (371)
                      .+.....+....+.|+...
T Consensus       103 eVt~~~~ege~~i~Lk~~~  121 (130)
T PF08204_consen  103 EVTELSREGETTIELKYRV  121 (130)
T ss_dssp             EEEETTEEEEEEEEEEE--
T ss_pred             EEEecCCCceEEEEEEEEE
Confidence            9998888777777777643

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=96.47  E-value=0.075  Score=36.09  Aligned_cols=38  Identities=21%  Similarity=0.330  Sum_probs=30.1

Q ss_pred             CeeEEEEccCCcCCCeEEEEEEEcCCCCe-EEEEEEEEe
Q psy14542         57 SDEVLVLDRVQREDAGMYQCHVSADDDSA-QMSAQVILG   94 (371)
Q Consensus        57 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~   94 (371)
                      .+..|.|+.++..|+|.|.-.+++..|.. ...+.|.|.
T Consensus        69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   69 ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence            77899999999999999999999988876 355666664

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=96.43  E-value=0.05  Score=46.00  Aligned_cols=119  Identities=15%  Similarity=0.302  Sum_probs=77.5

Q ss_pred             eCCCcEEEeccCcEEEEEEecC-C-CCCCeeEEEeCCEEEeeC--------------------------------CeeEE
Q psy14542         16 SPSGQVVVDVGHRIELHCRVSP-K-RLSSAKAWLKDGLVLRRN--------------------------------SDEVL   61 (371)
Q Consensus        16 ~p~~~~~~~~G~~v~l~C~~~~-~-~~~~~~~W~~~~~~~~~~--------------------------------~~~~l   61 (371)
                      .+-..+.+..|..+.|.|..+. + .......|+..|-++.+-                                ..++|
T Consensus       269 k~~~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STL  348 (500)
T PHA02914        269 KKFDEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTL  348 (500)
T ss_pred             cccceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceE
Confidence            3444467788999999996543 2 224458998654333211                                56799


Q ss_pred             EEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEecceeeEecCCceeeecCCc-EEEEEEecCC-CCCceEEEeeCCEEee
Q psy14542         62 VLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHR-IELHCRVSPK-RLSSAKAWLKDGLVLR  139 (371)
Q Consensus        62 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~-v~l~C~~~~~-~~~~~v~W~~~~~~~~  139 (371)
                      +|.++..+.+|-|.|++.........+-.|.|. ....+.-     ..+|.. -.+.|-+... ..++.+.|.-+|....
T Consensus       349 TIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~-d~V~f~W-----~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~  422 (500)
T PHA02914        349 TIKKAHINNAGCYEAQAFMGKFKEECRHCFKVA-DHVFFKW-----NTEGDNETKVACYAAQYDMQPFSILWKSNGVSFG  422 (500)
T ss_pred             EeeeEEEEcCCceEEEEecCcchhhhhhheEec-cEEEEEE-----EeccCceEEEEEEEEecccCCceeEEEEccEEec
Confidence            999999999999999998765555555666665 2221111     124333 4568988655 3447899998887654


Q ss_pred             e
Q psy14542        140 R  140 (371)
Q Consensus       140 ~  140 (371)
                      .
T Consensus       423 G  423 (500)
T PHA02914        423 G  423 (500)
T ss_pred             C
Confidence            4

>PHA03042 CD47-like protein; Provisional

Probab=96.36  E-value=0.02  Score=45.76  Aligned_cols=73  Identities=19%  Similarity=0.280  Sum_probs=49.9

Q ss_pred             eecCCeEEEEEEeecC-----CCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGN-----PLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~-----p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      ..-.+++.+.|.+..-     ....+.|..++..+......  +.++|.+... ..-.|+|+|+|.+...+....+.|+.
T Consensus        28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t--n~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~~IeLk~  104 (286)
T PHA03042         28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT--NTSSLKFNFS-KNLSGNYTCEAINKFNKIKNTIELQY  104 (286)
T ss_pred             EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC--cceEEEEecc-ccCCCceeEEEeecccCccEEEEEEE
Confidence            5567889999998642     34469999998876544332  2345666543 34589999999987666666666655


Q ss_pred             e
Q psy14542        309 A  309 (371)
Q Consensus       309 ~  309 (371)
                      .
T Consensus       105 ~  105 (286)
T PHA03042        105 V  105 (286)
T ss_pred             E
Confidence            4

>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily

Probab=96.22  E-value=0.099  Score=34.77  Aligned_cols=81  Identities=17%  Similarity=0.240  Sum_probs=54.5

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe--CCEEEeeC-CeeEEEEccCCcCCCeEEEEEEEcCCCCeE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK--DGLVLRRN-SDEVLVLDRVQREDAGMYQCHVSADDDSAQ   86 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~--~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   86 (371)
                      .+.+.+.|+. ..|..|+++.+.|..+-..| ..+.|.-  ....+..+ .-..+.+.+++. | ..-.|.+...+.+..
T Consensus         3 ~f~v~v~P~~-~vV~~G~Sv~VNCStsC~~p-~~~GLET~L~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~~   78 (91)
T PF03921_consen    3 AFEVRVSPEE-PVVPPGGSVWVNCSTSCPQP-EKIGLETSLSKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQSS   78 (91)
T ss_dssp             -S-EEEESSE-EEEETTEEEEEEEEESSSS--SEEEEESSSEEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEEEE
T ss_pred             ceEEEEECCc-cEECCCCCEEEEEcCCCCCC-CcceEEEecCCcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeEEE
Confidence            4568889999 99999999999996543333 2355532  22233222 455788889986 4 466899998766667


Q ss_pred             EEEEEEEe
Q psy14542         87 MSAQVILG   94 (371)
Q Consensus        87 ~~~~l~v~   94 (371)
                      +++.|+|+
T Consensus        79 ~~~~ItVY   86 (91)
T PF03921_consen   79 ASANITVY   86 (91)
T ss_dssp             EEEEEEEE
T ss_pred             eEEeeEEe
Confidence            88999998

They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=96.09  E-value=0.5  Score=36.95  Aligned_cols=139  Identities=14%  Similarity=0.163  Sum_probs=69.8

Q ss_pred             ceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeee-
Q psy14542        127 SAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLS-  205 (371)
Q Consensus       127 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~-  205 (371)
                      ..++|+.+|..+.....  .......           .+|.++  ..+.|.+......+..-..+|.+.-. ......+ 
T Consensus         7 ~~~~Wf~dg~~v~~~~~--~~~~~~~-----------~~G~~s--~vStl~~~~~~~~~~pp~i~C~v~W~-r~~v~~~r   70 (211)
T PF02124_consen    7 VRFRWFEDGNPVEPRFI--RDSSQVW-----------SDGLFS--RVSTLTLPGNSADSPPPSIRCQVTWY-RDSVSETR   70 (211)
T ss_pred             EEEEEEECCEeCCccce--eeEEEEe-----------cCCcEE--EEEEEEecCCCCCCCCCcceEEEEEc-cCCCeeeE
Confidence            68999999997764321  1111111           112222  22566664433333366899998765 2222111 


Q ss_pred             -eccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCC--CceEEEeCCcccccCCceEE------ecceE
Q psy14542        206 -VNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL--PTIKWYKQDSPVEESDRIQR------IGSSL  276 (371)
Q Consensus       206 -~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~~~------~~~~l  276 (371)
                       .+...-.|.     .+|.+.......         ...|.+.--|.  ..+.|.-++...........      .-+..
T Consensus        71 ~~a~~~P~Vy-----~~P~vsv~F~~g---------~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglv  136 (211)
T PF02124_consen   71 FNATATPSVY-----PKPRVSVRFEDG---------YAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLV  136 (211)
T ss_pred             eeccccccee-----cCCEEEEEecCC---------EEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCccee
Confidence             111122333     566665433222         23477655442  67999988875433222221      12345


Q ss_pred             EEeccC--CCCCe--EEEEEEEc
Q psy14542        277 SISHVE--ESDSG--VWNCVANN  295 (371)
Q Consensus       277 ~i~~~~--~~d~G--~Y~C~a~n  295 (371)
                      .|.+..  ....|  +|+|++..
T Consensus       137 nirs~~pls~~~~~~~YtC~l~G  159 (211)
T PF02124_consen  137 NIRSRRPLSDEDGPVEYTCRLIG  159 (211)
T ss_pred             EeecccCCCccCCceeEEEEEee
Confidence            555443  22345  99999864

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PHA02982 hypothetical protein; Provisional

Probab=96.07  E-value=0.1  Score=40.08  Aligned_cols=130  Identities=12%  Similarity=0.218  Sum_probs=68.7

Q ss_pred             ecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCC-eeEEEEcc---cCcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542        109 DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS-DEVLVLDR---VQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES  184 (371)
Q Consensus       109 ~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~-~~~~~~~~---~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~  184 (371)
                      ..+++|.|.|.......-....|+++....-.+. .....++.   ........|.....      ...++|+|.++...
T Consensus        37 ~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~------g~~STLTIkk~~i~  110 (251)
T PHA02982         37 TVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVS------GNSSTFTMKKPDPQ  110 (251)
T ss_pred             cCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEe------ccceeEEeccCCcc
Confidence            6799999999986655446789988543221110 00011111   01111112221111      13478999999999


Q ss_pred             CccceeEEEeeccccceeee-eeccceeeeecchhccccceeeeeeeeeeeecC-CeEEEEEEeecCCCCceEEEeCCc
Q psy14542        185 DRYRSYQCRGVNKLTGASLL-SVNRGRLSLTENKRLLSAAKMFEKHRILNVKKD-ESVILPCSAQGNPLPTIKWYKQDS  261 (371)
Q Consensus       185 d~~g~y~C~~~~~~~~~~~~-~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g-~~~~l~C~~~~~p~~~v~W~~~~~  261 (371)
                      . .|-|+|++... .+.... ..   -+.|+..    ...+.        ...+ ....++|-+......-..|.-+|.
T Consensus       111 N-~GCYtc~~ks~-~~k~E~c~k---Cl~V~~~----~V~~~--------W~e~nNeT~V~CyVgS~~~dvp~W~V~GV  172 (251)
T PHA02982        111 N-LGCFTCEAKDA-EGKEETCEK---CLEIQKE----DILYV--------VEEHNNETIITCFVGSKHGDVPRFIVAGI  172 (251)
T ss_pred             c-CCceEEEEecC-CCchheehe---eeeEecc----eEEEE--------EEecCCeEEEEEEEEeccCCCccEEEeeE
Confidence            9 99999999875 332222 22   4445211    11111        1122 335678987654433348887664

>PHA03042 CD47-like protein; Provisional

Probab=95.99  E-value=0.058  Score=43.25  Aligned_cols=69  Identities=12%  Similarity=0.221  Sum_probs=45.6

Q ss_pred             EeccCcEEEEEEecCC----CCCCeeEEEeCCEEEeeC---CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEE
Q psy14542         23 VDVGHRIELHCRVSPK----RLSSAKAWLKDGLVLRRN---SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI   92 (371)
Q Consensus        23 ~~~G~~v~l~C~~~~~----~~~~~~~W~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~   92 (371)
                      -.-.+++.++|.+..-    .....+.|..++..+-..   ...+|.+... ..-.|+|+|.+.+..++....+.|.
T Consensus        28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~~IeLk  103 (286)
T PHA03042         28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTNTSSLKFNFS-KNLSGNYTCEAINKFNKIKNTIELQ  103 (286)
T ss_pred             EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCcceEEEEecc-ccCCCceeEEEeecccCccEEEEEE
Confidence            3457889999965531    124559999999877653   3345666533 3348999999997666555555444

>KOG4597|consensus

Probab=95.98  E-value=0.015  Score=50.16  Aligned_cols=89  Identities=17%  Similarity=0.188  Sum_probs=65.4

Q ss_pred             cceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEe---CCccccc--CCc----eEEecceEEEeccCCCCCeEEEEE
Q psy14542        222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYK---QDSPVEE--SDR----IQRIGSSLSISHVEESDSGVWNCV  292 (371)
Q Consensus       222 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~---~~~~~~~--~~~----~~~~~~~l~i~~~~~~d~G~Y~C~  292 (371)
                      +.+...+.... +..+++.+++|-+.|.+.+.|+|.+   |+..+..  ...    .......|.|-+....|+|.|+|.
T Consensus       197 c~l~~cpa~w~-vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs  275 (560)
T KOG4597|consen  197 CALVDCPAEWF-VGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCS  275 (560)
T ss_pred             cccccCcchhh-cccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeec
Confidence            34444455555 8889999999999999999999975   3332211  111    112335689999999999999999


Q ss_pred             EEcCCCCceeEEEEEEecC
Q psy14542        293 ANNSEGQDKMQLFIQYAHG  311 (371)
Q Consensus       293 a~n~~g~~~~~~~l~v~~~  311 (371)
                      +.+..|...+.+.+.+...
T Consensus       276 ~rcg~g~~~rdv~c~s~~g  294 (560)
T KOG4597|consen  276 ARCGAGFLRRDVPCSSVKG  294 (560)
T ss_pred             cccccceeeccceeeeecc
Confidence            9999999999888877643

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=95.79  E-value=0.017  Score=45.99  Aligned_cols=47  Identities=21%  Similarity=0.405  Sum_probs=36.6

Q ss_pred             CCceEEEeCCc-ccccCCceE-EecceEEEeccCCCCCeEEEEEEEcCC
Q psy14542        251 LPTIKWYKQDS-PVEESDRIQ-RIGSSLSISHVEESDSGVWNCVANNSE  297 (371)
Q Consensus       251 ~~~v~W~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~  297 (371)
                      .|.+.|...++ .+....++. ...+.|.+.+...+++|.|+|..+...
T Consensus        12 DP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   12 DPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence            47899997654 555555555 456789999999999999999998654

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=94.94  E-value=0.18  Score=32.77  Aligned_cols=69  Identities=14%  Similarity=0.209  Sum_probs=40.7

Q ss_pred             EeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEE-cCCCCeEEEEEEEE
Q psy14542         23 VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVS-ADDDSAQMSAQVIL   93 (371)
Q Consensus        23 ~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~~~l~v   93 (371)
                      +..|+.+.+.-.- ...-.+.+.|+..+..... ....+.....+..|+|.+.|.|. +..........|.|
T Consensus         9 ~l~~e~L~~tl~~-~~~~~~~~~l~~~~~k~~~-~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen    9 VLPCEVLELTLEK-PPGMKPSLFLENPGKKSLE-TKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             EEEEEEESECEEE-TTTECEEEEEECSSCEEEE-ESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             EeeeeeEEEEEcC-CCCCChhheeeccCccccc-cceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            4455555554422 2222456778776655443 45566777888899999999995 33223334444443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=94.52  E-value=0.042  Score=43.89  Aligned_cols=43  Identities=21%  Similarity=0.366  Sum_probs=33.0

Q ss_pred             CCCCeeEEEeCC-EEEeeC------CeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542         39 RLSSAKAWLKDG-LVLRRN------SDEVLVLDRVQREDAGMYQCHVSAD   81 (371)
Q Consensus        39 ~~~~~~~W~~~~-~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~   81 (371)
                      -.+|.+.|...+ +.+...      ..+.|.+.+...+++|.|+|.....
T Consensus        10 ~iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk   59 (271)
T PF07354_consen   10 LIDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYK   59 (271)
T ss_pred             cCCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEE
Confidence            357889998843 333322      7788999999999999999998743

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=93.63  E-value=0.59  Score=30.42  Aligned_cols=51  Identities=22%  Similarity=0.308  Sum_probs=32.2

Q ss_pred             CceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEE-EcCCCCceeEEEEEE
Q psy14542        252 PTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVA-NNSEGQDKMQLFIQY  308 (371)
Q Consensus       252 ~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a-~n~~g~~~~~~~l~v  308 (371)
                      +.+.|...+.....      ....+.......+|+|.+.|.| .+..-.......|.|
T Consensus        27 ~~~~l~~~~~k~~~------~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen   27 PSLFLENPGKKSLE------TKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             EEEEEECSSCEEEE------ESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             hhheeeccCccccc------cceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            45677655443322      2345666778889999999999 555544555555544

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>KOG4597|consensus

Probab=93.45  E-value=0.15  Score=44.37  Aligned_cols=73  Identities=15%  Similarity=0.058  Sum_probs=57.6

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEe---CCEEEeeC-----------CeeEEEEccCCcCCCeEEEEEEEcCCCCeE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLK---DGLVLRRN-----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQ   86 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~---~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   86 (371)
                      -.+..|++..++| -..+.+...|.|.+   |+..+...           ....|.|-+....|+|.|+|.+.+..|...
T Consensus       206 w~vg~wetcS~tC-g~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~  284 (560)
T KOG4597|consen  206 WFVGDWETCSSTC-GVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLR  284 (560)
T ss_pred             hhcccchhhcccc-cccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceee
Confidence            5678899999999 55677888999976   33332222           667899999999999999999999888877


Q ss_pred             EEEEEEEe
Q psy14542         87 MSAQVILG   94 (371)
Q Consensus        87 ~~~~l~v~   94 (371)
                      ..+.+.+.
T Consensus       285 rdv~c~s~  292 (560)
T KOG4597|consen  285 RDVPCSSV  292 (560)
T ss_pred             ccceeeee
Confidence            77776664

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=93.35  E-value=0.48  Score=31.59  Aligned_cols=64  Identities=19%  Similarity=0.414  Sum_probs=41.1

Q ss_pred             EeCCCcEEEeccCcEEEEEEecCCC----CCCeeEEEeCCEEEeeC-------CeeEEEEccCCcCCCeEEEEEEE
Q psy14542         15 MSPSGQVVVDVGHRIELHCRVSPKR----LSSAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAGMYQCHVS   79 (371)
Q Consensus        15 ~~p~~~~~~~~G~~v~l~C~~~~~~----~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~   79 (371)
                      +.|+. ..+..|+++++.|....+-    ....+.|..++..++..       ..+++++.+.....+-.|-|...
T Consensus         8 i~p~~-pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l~   82 (89)
T PF06328_consen    8 ISPPS-PVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKLA   82 (89)
T ss_dssp             EECSS-SEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEEC
T ss_pred             EecCC-CEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEEc
Confidence            34555 5789999999999665432    34569999988766554       44667777766655556777643

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=92.91  E-value=0.48  Score=39.99  Aligned_cols=22  Identities=23%  Similarity=0.481  Sum_probs=18.6

Q ss_pred             cEEEEEEecCC-CCCceEEEeeC
Q psy14542        113 RIELHCRVSPK-RLSSAKAWLKD  134 (371)
Q Consensus       113 ~v~l~C~~~~~-~~~~~v~W~~~  134 (371)
                      .++|+|.+.|+ |....+.|.++
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            57999999987 44578999999

>PRK14081 triple tyrosine motif-containing protein; Provisional

Probab=92.32  E-value=10  Score=35.78  Aligned_cols=277  Identities=10%  Similarity=0.025  Sum_probs=139.5

Q ss_pred             EeccCcEEEEEEec-CCCCCCeeEEEe---CCEEEeeC---CeeEEEEccCCcCCCeEEE--EEEEcCCC----CeEEEE
Q psy14542         23 VDVGHRIELHCRVS-PKRLSSAKAWLK---DGLVLRRN---SDEVLVLDRVQREDAGMYQ--CHVSADDD----SAQMSA   89 (371)
Q Consensus        23 ~~~G~~v~l~C~~~-~~~~~~~~~W~~---~~~~~~~~---~~~~l~i~~~~~~d~G~Y~--C~~~~~~~----~~~~~~   89 (371)
                      +..|+.+.|.-.+. .+.....+...+   +|......   ....+.   -.+..+|.|+  |.+.....    .+.+.+
T Consensus       203 ~i~~~eI~f~~~a~~~~g~~~LYKF~~i~~~G~~~~~qdYst~n~~~---y~~~~~G~Y~i~~~VKD~~S~~eyDD~~~l  279 (667)
T PRK14081        203 LICDEELVFEVESVYEEDRTILYKFVKIDSDGKQTCIQDYSTKNIVS---YKEKKSGDYKLLCLVKDMYSNNEFDDRAVL  279 (667)
T ss_pred             eecCcEEEEEEEEEeCCCceEEEEEEEECCCCCEEEecCccccceEE---EEeCCCccEEEEEEEeccCcccccccceEE
Confidence            55688888884322 222233455544   55444333   222333   3356899885  55543322    234555


Q ss_pred             EEEEecc-eeeE---ecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeC
Q psy14542         90 QVILGGE-LVEI---ASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED  165 (371)
Q Consensus        90 ~l~v~~~-~~~~---~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~  165 (371)
                      ...|... ++.+   ..........|+.+.|...+.|... ..+++.-.|.......-..                    
T Consensus       280 ~y~Vk~~~~vkI~~~~~d~~s~ql~g~~I~ika~a~GG~~-llYrf~I~G~~~e~~~Y~~--------------------  338 (667)
T PRK14081        280 VYTVKPYKDIKIRNFTTDLSSPQLTDTDIELKAVAEGGKE-LLYRFIIKGKESEDSGYIR--------------------  338 (667)
T ss_pred             EEEEecCCCcEEEEEEEcCCCCeecCceEEEEEEecCCCc-eEEEEEECCcEEeeccccc--------------------
Confidence            5555422 2222   3333334468999999999988765 6777766665544322100                    


Q ss_pred             CceeEeccceEEEEEeecCCccceeEEEeecccccee--eeeeccceeeeecchhccccc-eee--eeeeeeeeecCCeE
Q psy14542        166 GKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS--LLSVNRGRLSLTENKRLLSAA-KMF--EKHRILNVKKDESV  240 (371)
Q Consensus       166 ~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~--~~~~~~~~l~v~~~~~~~~p~-~~~--~~~~~~~~~~g~~~  240 (371)
                             +..+.+.   +.. .|.|.-.+.-......  ........+.+....  ..|. +..  .+.... ...|+.+
T Consensus       339 -------~n~~~w~---P~~-~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~--~~p~~I~~vl~d~~~~-~lvG~~i  404 (667)
T PRK14081        339 -------NNIYTWK---PKI-AGKYSITLWVKDISSKGEYEDKSSIDYTIEEKS--KEPIKIEDVILDKGKH-ILKGEEI  404 (667)
T ss_pred             -------cceEEEe---eCC-CceEEEEEEEEcCcCcccccceEEEEEEEcccC--CCCeEEEEEEECCCCc-eEeCCeE
Confidence                   0112221   223 5666665543311110  000001133443210  1221 111  111223 7789999


Q ss_pred             EEEEEeecCCCCceE-EE-eCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCC--C----ceeEEEEEEecCc
Q psy14542        241 ILPCSAQGNPLPTIK-WY-KQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEG--Q----DKMQLFIQYAHGK  312 (371)
Q Consensus       241 ~l~C~~~~~p~~~v~-W~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g--~----~~~~~~l~v~~~p  312 (371)
                      .+.|.+.+.-...+. |. ++|..+...+  ...+..+.+.   +.-+|.|+-.+.-...  .    ....+.+.|.+..
T Consensus       405 ~i~v~a~gg~~~lY~f~ik~ng~~ve~~~--Y~~~~~~~f~---P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~  479 (667)
T PRK14081        405 KIRVIAEGGTNLRYSFIIKKDGKEEEKID--YGKNNWVNFI---PEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHEYI  479 (667)
T ss_pred             EEEEEecCCCeEEEEEEEEECCEEEEEee--cccccEEEEE---ECCCeeEEEEEEEecccCchhcccceEEEEEEeccC
Confidence            999999875444432 33 4555443321  1223345544   4568999987763332  2    3566778887644


Q ss_pred             ccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecC
Q psy14542        313 YHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN  363 (371)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~  363 (371)
                      +..       +..+..|...              ....|+.++|.|.+++.
T Consensus       480 P~~-------i~~il~~~~~--------------~~~vg~~i~~~~~~~~~  509 (667)
T PRK14081        480 PAE-------IDYILLPVKE--------------YYLVGDDIEIEVIIQNT  509 (667)
T ss_pred             cee-------eeeEEecccc--------------cEEeCCEEEEEEEEeCC
Confidence            410       2222222221              45689999999999874

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=92.08  E-value=0.42  Score=40.32  Aligned_cols=22  Identities=23%  Similarity=0.465  Sum_probs=17.8

Q ss_pred             cEEEEEEecCCCCC-CeeEEEeC
Q psy14542         28 RIELHCRVSPKRLS-SAKAWLKD   49 (371)
Q Consensus        28 ~v~l~C~~~~~~~~-~~~~W~~~   49 (371)
                      .++|+|.+...+|. ..+.|.|+
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            58999988776664 46999999

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=92.03  E-value=0.5  Score=32.23  Aligned_cols=38  Identities=18%  Similarity=0.251  Sum_probs=29.2

Q ss_pred             EecceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEE
Q psy14542        271 RIGSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQY  308 (371)
Q Consensus       271 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v  308 (371)
                      ..+-.|.|+.++..|+|.|.-++++..|.. ...+.+.|
T Consensus        68 ~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   68 SENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             TTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             ccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            345689999999999999999999999986 44455555

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PRK14081 triple tyrosine motif-containing protein; Provisional

Probab=88.20  E-value=24  Score=33.46  Aligned_cols=272  Identities=13%  Similarity=0.052  Sum_probs=148.6

Q ss_pred             EEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---CeeEEEEccCCcCCCeEEEEEEEcCCC------CeEEEEEEE
Q psy14542         22 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---SDEVLVLDRVQREDAGMYQCHVSADDD------SAQMSAQVI   92 (371)
Q Consensus        22 ~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~------~~~~~~~l~   92 (371)
                      ....|+.+.|...+..+. ...+...-.|..+...   ....+..   +++.+|.|.-.+.-.+.      .+...+.+.
T Consensus       301 ~ql~g~~I~ika~a~GG~-~llYrf~I~G~~~e~~~Y~~~n~~~w---~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~  376 (667)
T PRK14081        301 PQLTDTDIELKAVAEGGK-ELLYRFIIKGKESEDSGYIRNNIYTW---KPKIAGKYSITLWVKDISSKGEYEDKSSIDYT  376 (667)
T ss_pred             CeecCceEEEEEEecCCC-ceEEEEEECCcEEeeccccccceEEE---eeCCCceEEEEEEEEcCcCcccccceEEEEEE
Confidence            457899999999665544 4445544456555443   3333333   34579999988874322      124556666


Q ss_pred             Eecc--ee-e---EecCCceeeecCCcEEEEEEecCCCCCceEEE--eeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEe
Q psy14542         93 LGGE--LV-E---IASSNQVVVDVGHRIELHCRVSPKRLSSAKAW--LKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIE  164 (371)
Q Consensus        93 v~~~--~~-~---~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W--~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~  164 (371)
                      +...  .| .   +..........|+.+.+.+.+.+... ..+.+  .++|..+....-                     
T Consensus       377 i~~~~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~-~lY~f~ik~ng~~ve~~~Y---------------------  434 (667)
T PRK14081        377 IEEKSKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTN-LRYSFIIKKDGKEEEKIDY---------------------  434 (667)
T ss_pred             EcccCCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCe-EEEEEEEEECCEEEEEeec---------------------
Confidence            6532  22 2   22333344578999999999988754 55544  336665543210                     


Q ss_pred             CCceeEeccceEEEEEeecCCccceeEEEeeccccc-----eeeeeeccceeeeecchhccccc-ee--eeeeeeeeeec
Q psy14542        165 DGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTG-----ASLLSVNRGRLSLTENKRLLSAA-KM--FEKHRILNVKK  236 (371)
Q Consensus       165 ~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~-----~~~~~~~~~~l~v~~~~~~~~p~-~~--~~~~~~~~~~~  236 (371)
                          .  .+..+.+.   +.- +|.|+-.+.....-     .....+   .+.|.+    ..|. +.  ..+.... ...
T Consensus       435 ----~--~~~~~~f~---P~~-~G~Y~IeV~vKdk~S~~~yD~~k~v---~l~V~e----~~P~~i~~il~~~~~~-~~v  496 (667)
T PRK14081        435 ----G--KNNWVNFI---PEE-KGNYELEVRVKDKYSDKEYDAHTIV---YIKVHE----YIPAEIDYILLPVKEY-YLV  496 (667)
T ss_pred             ----c--cccEEEEE---ECC-CeeEEEEEEEecccCchhcccceEE---EEEEec----cCceeeeeEEeccccc-EEe
Confidence                0  00122222   233 78888777654111     112222   555553    2333 22  1232333 788


Q ss_pred             CCeEEEEEEeecCCCCceE--EEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCC------ceeEEEEEE
Q psy14542        237 DESVILPCSAQGNPLPTIK--WYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQ------DKMQLFIQY  308 (371)
Q Consensus       237 g~~~~l~C~~~~~p~~~v~--W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~------~~~~~~l~v  308 (371)
                      |+.+++.|.+++.....+.  -..+|..+...+ + +....+.+.   +.-+|.|+..+.-....      ....+.+.|
T Consensus       497 g~~i~~~~~~~~~k~v~y~y~~~~NG~~v~~t~-Y-s~~~~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V  571 (667)
T PRK14081        497 GDDIEIEVIIQNTKDVLIKYILKINGHKVEETD-Y-IKNKKYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYV  571 (667)
T ss_pred             CCEEEEEEEEeCCCeEEEEEEEEECCEEEEEee-c-cccceEEEe---ecCCceEEEEEEEcccccccccccceEEEEEE
Confidence            9999999998875444333  234444332211 1 123345554   45589999987643332      356677888


Q ss_pred             ecCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCC
Q psy14542        309 AHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNP  364 (371)
Q Consensus       309 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p  364 (371)
                      .++.+         +.+..-.             .....+..|+.++|.-.+.|.-
T Consensus       572 ~e~~p---------i~nt~~~-------------~~~~~~~~n~~~t~~~~~~gg~  605 (667)
T PRK14081        572 REALP---------ITNTKIK-------------TSKKKFKCNEEVTFSVKSEGGK  605 (667)
T ss_pred             cCCCC---------ceeeEEE-------------eecceEEcCCeEEEEEEccCCC
Confidence            87766         4422210             0111567889999988777643

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=86.97  E-value=13  Score=29.27  Aligned_cols=91  Identities=13%  Similarity=0.115  Sum_probs=47.1

Q ss_pred             eeEEEeCCEEEeeC---------------CeeEEEEc-cCCcCCCeEEEEEEEcCCC-CeEEEEEEEEecceeeEecCCc
Q psy14542         43 AKAWLKDGLVLRRN---------------SDEVLVLD-RVQREDAGMYQCHVSADDD-SAQMSAQVILGGELVEIASSNQ  105 (371)
Q Consensus        43 ~~~W~~~~~~~~~~---------------~~~~l~i~-~~~~~d~G~Y~C~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~  105 (371)
                      .+.|+.||..+...               ..++|.+. +...+..=..+|.+.-... .....+.-.   ..|.+...|.
T Consensus         8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~---~~P~Vy~~P~   84 (211)
T PF02124_consen    8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNAT---ATPSVYPKPR   84 (211)
T ss_pred             EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecc---cccceecCCE
Confidence            47787777766544               22344442 2222223467898763222 222222111   2344444555


Q ss_pred             eee-ecCCcEEEEEEecCCCCC-ceEEEeeCCEEe
Q psy14542        106 VVV-DVGHRIELHCRVSPKRLS-SAKAWLKDGLVL  138 (371)
Q Consensus       106 ~~~-~~g~~v~l~C~~~~~~~~-~~v~W~~~~~~~  138 (371)
                      ..+ +++.  ...|.+..-+.. ..+.|.-++...
T Consensus        85 vsv~F~~g--~AVC~A~CVP~~~v~l~W~v~d~~~  117 (211)
T PF02124_consen   85 VSVRFEDG--YAVCTARCVPRGNVTLRWSVGDDPS  117 (211)
T ss_pred             EEEEecCC--EEEEEcceeeCCCeEEEEEECCccC
Confidence            555 3222  446887666543 789999877654

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PHA03052 Hypothetical protein; Provisional

Probab=86.61  E-value=2.5  Score=26.05  Aligned_cols=34  Identities=21%  Similarity=0.618  Sum_probs=27.3

Q ss_pred             EEEeccCcEEEEEEecCCCC--CCeeEEEeCCEEEe
Q psy14542         21 VVVDVGHRIELHCRVSPKRL--SSAKAWLKDGLVLR   54 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~--~~~~~W~~~~~~~~   54 (371)
                      +.+..|.+++|.|++.-+.+  ...+.|.-|+..+.
T Consensus         7 i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e   42 (69)
T PHA03052          7 IVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE   42 (69)
T ss_pred             EEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence            78899999999998875443  55699998888773

>PHA03240 envelope glycoprotein M; Provisional

Probab=86.56  E-value=0.63  Score=35.85  Aligned_cols=54  Identities=17%  Similarity=0.220  Sum_probs=36.6

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEe-------CC----EEEeeC------------------------CeeEEEEcc
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLK-------DG----LVLRRN------------------------SDEVLVLDR   65 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~-------~~----~~~~~~------------------------~~~~l~i~~   65 (371)
                      +.+.+|++|+|.- ...-.+...+.|++       ++    .++..-                        .+++|.|-+
T Consensus        33 vt~r~G~nVTLga-~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~  111 (258)
T PHA03240         33 HTTREGDPLLLGG-GHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAH  111 (258)
T ss_pred             cccccCCceeeCC-cccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEE
Confidence            5788999999977 43335667799998       21    111110                        566788888


Q ss_pred             CCcCCCeEEE
Q psy14542         66 VQREDAGMYQ   75 (371)
Q Consensus        66 ~~~~d~G~Y~   75 (371)
                      +..+|+|+|.
T Consensus       112 vn~sd~~nYc  121 (258)
T PHA03240        112 LNLSDAGEYC  121 (258)
T ss_pred             EeecCcchhh
Confidence            8888888873

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=86.14  E-value=7.9  Score=25.83  Aligned_cols=60  Identities=15%  Similarity=0.283  Sum_probs=36.3

Q ss_pred             eecCCeEEEEEEeecC-----CCCceEEEeCCcccccCCceEEecc--eEEEeccCCCCCeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGN-----PLPTIKWYKQDSPVEESDRIQRIGS--SLSISHVEESDSGVWNCVA  293 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~-----p~~~v~W~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~Y~C~a  293 (371)
                      +..|+.++..|.....     ....+.|..++..++.+......+.  .+++.+......-.|-|..
T Consensus        15 v~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen   15 VSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             EETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred             EeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence            8899999999998632     3456999999986665544334443  4555555444444555553

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=86.14  E-value=3.1  Score=27.87  Aligned_cols=68  Identities=16%  Similarity=0.332  Sum_probs=40.7

Q ss_pred             EEEEEE-eecCCCCceEEEeCCcccccCCceE------EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEE
Q psy14542        240 VILPCS-AQGNPLPTIKWYKQDSPVEESDRIQ------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ  307 (371)
Q Consensus       240 ~~l~C~-~~~~p~~~v~W~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  307 (371)
                      +.-.|. +.|.|+..|+|.-+-..-.......      .-.+.+.+-.....|.-..+|++....-....++.|.
T Consensus        23 ~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~   97 (98)
T cd05890          23 LVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLN   97 (98)
T ss_pred             EEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEec
Confidence            456788 5689999999984311000111111      1123455556677788899999988755555555554

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>PHA03052 Hypothetical protein; Provisional

Probab=86.12  E-value=4.3  Score=25.04  Aligned_cols=31  Identities=10%  Similarity=0.214  Sum_probs=24.5

Q ss_pred             eecCCeEEEEEEeecC---CCCceEEEeCCcccc
Q psy14542        234 VKKDESVILPCSAQGN---PLPTIKWYKQDSPVE  264 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~---p~~~v~W~~~~~~~~  264 (371)
                      +..|..++|.|.+.-.   ..+.+.|..|+..+.
T Consensus         9 ~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e   42 (69)
T PHA03052          9 TSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE   42 (69)
T ss_pred             EEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence            8889999999998632   235699999998773

>PHA03189 UL14 tegument protein; Provisional

Probab=84.55  E-value=7.6  Score=32.15  Aligned_cols=20  Identities=30%  Similarity=0.526  Sum_probs=15.5

Q ss_pred             cCCCCCeEEEEEEEcCCCCc
Q psy14542        281 VEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       281 ~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      +..+-+|.|.|+..|.....
T Consensus       140 v~t~taG~Y~CvLrN~tHgl  159 (348)
T PHA03189        140 VSTSTAGMYECVLRNETHGL  159 (348)
T ss_pred             EEecccceEEEEecccccee
Confidence            55667999999999976543

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=82.39  E-value=9.4  Score=25.64  Aligned_cols=64  Identities=14%  Similarity=0.121  Sum_probs=39.6

Q ss_pred             EEEEEEecCCCCCCeeEEEe--CCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEE
Q psy14542         29 IELHCRVSPKRLSSAKAWLK--DGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI   92 (371)
Q Consensus        29 v~l~C~~~~~~~~~~~~W~~--~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~   92 (371)
                      +.-.|....+.|...|.|.-  +|..-...         -.+.+.+-.....|.-..+|++..........+.|.
T Consensus        23 ~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~   97 (98)
T cd05890          23 LVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLN   97 (98)
T ss_pred             EEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEec
Confidence            56689768899999999975  33321111         223445555666666788999987644444444443

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>PHA03189 UL14 tegument protein; Provisional

Probab=80.92  E-value=14  Score=30.79  Aligned_cols=26  Identities=31%  Similarity=0.625  Sum_probs=17.6

Q ss_pred             EEEEccCCcCCCeEEEEEEEcCCCCeE
Q psy14542         60 VLVLDRVQREDAGMYQCHVSADDDSAQ   86 (371)
Q Consensus        60 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~   86 (371)
                      +|.+ ++..+-+|.|.|+..|......
T Consensus       135 tLtF-~v~t~taG~Y~CvLrN~tHglv  160 (348)
T PHA03189        135 TLTF-RVSTSTAGMYECVLRNETHGLV  160 (348)
T ss_pred             EEEE-EEEecccceEEEEeccccceee
Confidence            3443 3556679999999988655443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	371
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		3e-20
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		9e-20
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		1e-19
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		2e-19
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		2e-11
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		4e-11
3kld_A	384	Ptprg Cntn4 Complex Length = 384		2e-11
3kld_A	384	Ptprg Cntn4 Complex Length = 384		5e-11
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		3e-10
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		1e-09
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		2e-09
3s97_C	201	Ptprz Cntn1 Complex Length = 201		2e-09
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		4e-09
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		7e-09
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-08
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		3e-08
3v6b_R	424	Vegfr-2VEGF-E Complex Structure Length = 424		5e-08
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		1e-07
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		3e-04
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		1e-07
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		2e-07
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		2e-07
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		2e-07
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		5e-05
1nct_A	106	Titin Module M5, N-Terminally Extended, Nmr Length		2e-07
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-07
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		3e-07
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-07
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		5e-07
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		8e-07
1ie5_A	107	Nmr Structure Of The Third Immunoglobulin Domain Fr		1e-06
1nbq_A	209	Crystal Structure Of Human Junctional Adhesion Mole		1e-06
1tnm_A	100	Tertiary Structure Of An Immunoglobulin-Like Domain		1e-06
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		2e-06
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		2e-05
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		2e-06
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		2e-06
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		5e-06
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		1e-05
2edj_A	100	Solution Structure Of The Fifth Ig-Like Domain From		1e-05
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		1e-05
3kvq_A	108	Crystal Structure Of Vegfr2 Extracellular Domain D7		2e-05
2eo9_A	118	Solution Structure Of The Fifth Ig-Like Domain From		4e-05
2v9t_A	117	Complex Between The Second Lrr Domain Of Slit2 And		8e-05
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		1e-04
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-04
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		2e-04
1tlk_A	154	X-Ray Structure Determination Of Telokin, The C-Ter		3e-04
1fhg_A	154	High Resolution Refinement Of Telokin Length = 154		3e-04
1e07_A	642	Model Of Human Carcinoembryonic Antigen By Homology		3e-04
1e07_A	642	Model Of Human Carcinoembryonic Antigen By Homology		8e-04
3caf_A	100	Crystal Structure Of Hfgfr2 D2 Domain Length = 100		7e-04
3k0w_A	218	Crystal Structure Of The Tandem Ig-Like C2-Type 2 D		7e-04
1wvz_A	104	Solution Structure Of The D2 Domain Of The Fibrobla		7e-04
2yr3_A	99	Solution Structure Of The Fourth Ig-Like Domain Fro		8e-04
3dar_A	105	Crystal Structure Of D2 Domain From Human Fgfr2 Len		8e-04

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 83/149 (55%), Gaps = 7/149 (4%)
Query: 165 DGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTEN-KRLLSAA 223
           DGKY +L SGEL I +V   D Y+SYQCR  ++LTG + LS  +GRL +TE    +    
Sbjct: 157 DGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGSVRPKV 216
Query: 224 KMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYK------QDSPVEESDRIQRIGSSLS 277
              +KH+ ++V+   S  L C AQ  P P+ +WYK      +   V  +DR++++  +L 
Sbjct: 217 NPQDKHQFIDVELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLI 276
Query: 278 ISHVEESDSGVWNCVANNSEGQDKMQLFI 306
           I      DSG + CV NNS G + ++  +
Sbjct: 277 IKDAVVEDSGKYLCVVNNSVGGESVETVL 305

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 94.4 bits (233), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 91/176 (51%), Gaps = 15/176 (8%)
Query: 142 SDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGA 201
           +D V V+     E+   +     DGKY +L SGEL I +V   D Y+SYQCR  ++LTG 
Sbjct: 167 ADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGE 226
Query: 202 SLLSVNRGRLSLTEN-----KRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKW 256
           + LS  +GRL +TE       +++S AK   K          ++ L C AQG P+P  +W
Sbjct: 227 TRLSATKGRLVITEPISSAVPKVVSLAKFDMK----TYSGSSTMALLCPAQGYPVPVFRW 282
Query: 257 YK------QDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI 306
           YK      +   V  +DR++++  +L I      DSG + CV NNS G + ++  +
Sbjct: 283 YKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL 338

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 6/148 (4%)
Query: 165 DGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAK 224
           DGKY +L SGEL I +V   D Y+SYQCR  ++LTG + LS  +GRL +TE     +   
Sbjct: 161 DGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRT 220
Query: 225 MFEKHRILNVKKDESVILPCSAQGNPLPTIKWYK------QDSPVEESDRIQRIGSSLSI 278
                + L +    ++ L C AQG P P+ +WYK      +   V  +DR++++  +L I
Sbjct: 221 PALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLII 280
Query: 279 SHVEESDSGVWNCVANNSEGQDKMQLFI 306
                 DSG + CV NNS G + ++  +
Sbjct: 281 KDAVVEDSGKYLCVVNNSVGGESVETVL 308

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 6/148 (4%)
Query: 165 DGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAK 224
           DGKY +L SGEL I +V   D Y+SYQCR  ++LTG + LS  +GRL +TE     +   
Sbjct: 155 DGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRT 214
Query: 225 MFEKHRILNVKKDESVILPCSAQGNPLPTIKWYK------QDSPVEESDRIQRIGSSLSI 278
                + L +    ++ L C AQG P P+ +WYK      +   V  +DR++++  +L I
Sbjct: 215 PALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLII 274
Query: 279 SHVEESDSGVWNCVANNSEGQDKMQLFI 306
                 DSG + CV NNS G + ++  +
Sbjct: 275 KDAVVEDSGKYLCVVNNSVGGESVETVL 302

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 113/301 (37%), Gaps = 64/301 (21%)
Query: 21  VVVDVGHRIELHCRVSPKRLSSAKAWL-------KDGLVLRRNSDEVLVLDRVQREDAGM 73
           V V  G  + L C   P     + AW+       +D           L + +V++ D G 
Sbjct: 111 VSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGN 170
Query: 74  YQCHVSADDDSAQM---SAQVILG-----GEL---VEIASSNQVVVDVGHRIELHCRVSP 122
           Y C V+    + ++      +IL      GE    +E+     V  + G  ++L C    
Sbjct: 171 YTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALG 230
Query: 123 KRLSSAKAWLKDGLVL-----RRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELI 177
             + +      DG  +     R  S+ +L +   Q+EDAG Y+C  E+ +   ++ G+L 
Sbjct: 231 NPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLT 290
Query: 178 IHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKD 237
            +                                         +     +    ++V  +
Sbjct: 291 FY-----------------------------------------AQPNWVQIINDIHVAME 309
Query: 238 ESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSE 297
           ESV   C A G P PT +W K   P+   DRIQ    +L+I+ V  SD+G++ CVA N  
Sbjct: 310 ESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKH 369
Query: 298 G 298
           G
Sbjct: 370 G 370

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 128/322 (39%), Gaps = 67/322 (20%)
Query: 60  VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVE---IASSNQVVVDVGHRIEL 116
           +L+ +  + +DAG YQC ++ +     +S +  L    +E     + + V V  G  + L
Sbjct: 63  LLINNPNKTQDAGTYQC-IATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVL 121
Query: 117 HCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGEL 176
            C   P     + AW+ +                        Y  + ++ ++    +G L
Sbjct: 122 LCGPPPHSGELSYAWIFN-----------------------EYPSYQDNRRFVSQETGNL 158
Query: 177 IIHQVDESDRYRSYQCRGVNKLTGASLLSV-------NRGRLSLTENKRLLSAAKMFEKH 229
            I +V++SD   +Y C   N +T   +L         N G +   E K  +   +     
Sbjct: 159 YIAKVEKSD-VGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPET---- 213
Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDS-PVEESDRIQRIGSSLSISHVEESDSGV 288
             +  +K  +V L C A GNP+PTI W + D  P+    R  +    L I + ++ D+G 
Sbjct: 214 --VPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGS 271
Query: 289 WNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNV 348
           + CVA NS G++               ++ G+L  +          +     +    ++V
Sbjct: 272 YECVAENSRGKN---------------VAKGQLTFY----------AQPNWVQIINDIHV 306
Query: 349 KKDESVILPCSAQGNPLPTIKY 370
             +ESV   C A G P PT ++
Sbjct: 307 AMEESVFWECKANGRPKPTYRW 328

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 113/301 (37%), Gaps = 64/301 (21%)
Query: 21  VVVDVGHRIELHCRVSPKRLSSAKAWL-------KDGLVLRRNSDEVLVLDRVQREDAGM 73
           V V  G  + L C   P     + AW+       +D           L + +V++ D G 
Sbjct: 112 VSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGN 171
Query: 74  YQCHVSADDDSAQM---SAQVILG-----GEL---VEIASSNQVVVDVGHRIELHCRVSP 122
           Y C V+    + ++      +IL      GE    +E+     V  + G  ++L C    
Sbjct: 172 YTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALG 231
Query: 123 KRLSSAKAWLKDGLVL-----RRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELI 177
             + +      DG  +     R  S+ +L +   Q+EDAG Y+C  E+ +   ++ G+L 
Sbjct: 232 NPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLT 291
Query: 178 IHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKD 237
            +                                         +     +    ++V  +
Sbjct: 292 FY-----------------------------------------AQPNWVQIINDIHVAME 310
Query: 238 ESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSE 297
           ESV   C A G P PT +W K   P+   DRIQ    +L+I+ V  SD+G++ CVA N  
Sbjct: 311 ESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKH 370
Query: 298 G 298
           G
Sbjct: 371 G 371

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 128/322 (39%), Gaps = 67/322 (20%)
Query: 60  VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVE---IASSNQVVVDVGHRIEL 116
           +L+ +  + +DAG YQC ++ +     +S +  L    +E     + + V V  G  + L
Sbjct: 64  LLINNPNKTQDAGTYQC-IATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVL 122
Query: 117 HCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGEL 176
            C   P     + AW+ +                        Y  + ++ ++    +G L
Sbjct: 123 LCGPPPHSGELSYAWIFN-----------------------EYPSYQDNRRFVSQETGNL 159
Query: 177 IIHQVDESDRYRSYQCRGVNKLTGASLLSV-------NRGRLSLTENKRLLSAAKMFEKH 229
            I +V++SD   +Y C   N +T   +L         N G +   E K  +   +     
Sbjct: 160 YIAKVEKSD-VGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPET---- 214
Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDS-PVEESDRIQRIGSSLSISHVEESDSGV 288
             +  +K  +V L C A GNP+PTI W + D  P+    R  +    L I + ++ D+G 
Sbjct: 215 --VPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGS 272
Query: 289 WNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNV 348
           + CVA NS G++               ++ G+L  +          +     +    ++V
Sbjct: 273 YECVAENSRGKN---------------VAKGQLTFY----------AQPNWVQIINDIHV 307
Query: 349 KKDESVILPCSAQGNPLPTIKY 370
             +ESV   C A G P PT ++
Sbjct: 308 AMEESVFWECKANGRPKPTYRW 329

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 112/248 (45%), Gaps = 45/248 (18%)
Query: 69  EDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVV----VDVGHRIELHCRVSPKR 124
           EDAG+Y+C  + D       A V+L  E+ +  +  +VV       G   E+ CRVS   
Sbjct: 70  EDAGIYRCQAT-DAKGQTQEATVVL--EIYQKLTFREVVSPQEFKQGEDAEVVCRVS-SS 125
Query: 125 LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184
            + A +WL        +++EV                 I D ++ ML++  L I  +++S
Sbjct: 126 PAPAVSWL-------YHNEEVTT---------------ISDNRFAMLANNNLQILNINKS 163
Query: 185 DRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLS---AAKMFEKHRILNVKKDESVI 241
           D    Y+C G  +          RG +   +   +++   A  M +K      ++ E + 
Sbjct: 164 DE-GIYRCEGRVEA---------RGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMT 213
Query: 242 LPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSS--LSISHVEESDSGVWNCVANNSEGQ 299
             C A G+P P I W++    +EE+++    GS+  L++ ++  SD G + C A N  G+
Sbjct: 214 FSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGE 273
Query: 300 DKMQLFIQ 307
           D+ Q F+Q
Sbjct: 274 DEKQAFLQ 281

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 16/144 (11%)
Query: 165 DGKYHMLSSGELI-IHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAA 223
           D +Y +  +G+L+ I  V++SD    Y C   N + GA     + G L +    ++    
Sbjct: 52  DTRYSIRENGQLLTILSVEDSDD-GIYCCTANNGVGGAV---ESCGALQVKMKPKITRPP 107
Query: 224 KMFEKHRILNVKKDESV--ILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS-SLSISH 280
                   +NVK  E +  +LPC+  GNP P++ W K DS + E+ RI  + S SL I +
Sbjct: 108 --------INVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHN 159
Query: 281 VEESDSGVWNCVANNSEGQDKMQL 304
           V++ D+G + CVA NS G    +L
Sbjct: 160 VQKEDAGQYRCVAKNSLGTAYSKL 183

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/362 (20%), Positives = 135/362 (37%), Gaps = 68/362 (18%)
Query: 26  GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE---------VLVLD----RVQREDAG 72
           G  + L+C     R      W KDGL+L    D+         +L+ +    R  + D G
Sbjct: 36  GGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEG 95
Query: 73  MYQCHVSADDDSAQMS--AQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKA 130
           +YQC  S  D  + +S  A+V++ G L  ++ +  +   +G  + L C V    + +   
Sbjct: 96  LYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIH- 154
Query: 131 WLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSY 190
           W K+                  ++D         D +  +L SG L I ++   D    Y
Sbjct: 155 WQKN------------------QQDLNPIP---GDSRVVVLPSGALQISRLQPGDS-GVY 192
Query: 191 QCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNP 250
           +C   N    AS  + N   + +  +  L       ++   +   + +  +L C   G P
Sbjct: 193 RCSARNP---ASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYP 249
Query: 251 LPTIKWYKQDSPVEESDRIQRI--GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308
            P+  W + +  ++   +   +  GS+L IS+V + DSG + CV                
Sbjct: 250 PPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVV--------------- 294
Query: 309 AHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTI 368
            +   ++ +S EL +          L           L   +   +   C+  G P+PT+
Sbjct: 295 TYKNENISASAELTV----------LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTV 344
Query: 369 KY 370
            +
Sbjct: 345 NW 346

>pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
Query: 172 SSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRI 231
           ++G L I  V+ SD+  +Y C   +     S+ S     + + E       A +  + + 
Sbjct: 64  TNGNLYIANVEASDK-GNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKD 122
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNC 291
           +     ++V L C A GNP+P I+W K   P+  +  I   G+ L I +++  D G++ C
Sbjct: 123 VYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYEC 182
Query: 292 VANNSEGQDKMQ--LFIQ 307
            A N  G+DK Q  +++Q
Sbjct: 183 EAENIRGKDKHQARIYVQ 200

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 38/159 (23%)
Query: 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSS--LS 277
           + A  M +K      ++ E +   C A G+P P I W++    +EE+++    GS+  L+
Sbjct: 2   MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELT 61
Query: 278 ISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAA 337
           + ++  SD G + C A N  G+D+ Q F+Q                              
Sbjct: 62  VRNIINSDGGPYVCRATNKAGEDEKQAFLQ------------------------------ 91
Query: 338 KMFEKHRILNVKKDES-----VILPCSAQGNPLPTIKYR 371
            +F +  I+ +K + +     V L C A+G P+P I ++
Sbjct: 92  -VFVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWK 129

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 11/115 (9%)
Query: 190 YQCRGVNKLTGASLLSVNR-GRLSLTENKRLLSAAKMFEKHRILNV-KKDESVILPCSAQ 247
           Y+C   N     SL  +N   +LS+ E  +L S     +    L V +K  +  + C+A 
Sbjct: 80  YECTATN-----SLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAG 134
Query: 248 GNPLPTIKWYKQDSPVEES---DRIQRIGS-SLSISHVEESDSGVWNCVANNSEG 298
           GNP P I W+K   PV+ +    RI+++ S +L I   EESD G + CVA NS G
Sbjct: 135 GNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNSAG 189

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 190 YQCRGVNKLTGASLLSVNR-GRLSLTENKRLLSAAKMFEKHRILNV-KKDESVILPCSAQ 247
           Y+C   N     SL  +N   +LS+ E ++L       +    L V +K  +  + C+A 
Sbjct: 79  YECTATN-----SLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAG 133
Query: 248 GNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVANNSEG 298
           GNP P I W+K   PV+ +    RI      +L I   EESD G + CVA NS G
Sbjct: 134 GNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAG 188

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/317 (21%), Positives = 127/317 (40%), Gaps = 68/317 (21%)
Query: 11  LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG------------LVLRRNSD 58
           L +++ PS Q  + VG      C+V+        +W                +V   +  
Sbjct: 3   LQVDIVPS-QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 59  EVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHC 118
             L +     +DAG+Y+C V+A+D +                 S   V V +  ++    
Sbjct: 62  STLTIYNANIDDAGIYKCVVTAEDGTQ----------------SEATVNVKIFQKLMFKN 105
Query: 119 RVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHI-------EDGKYHML 171
             +P+               +   D V+V D V      +   H        +D ++ +L
Sbjct: 106 APTPQEF-------------KEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL 152
Query: 172 SSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFE-KHR 230
           S+  L I  + ++D   +Y+C G        +L+  RG ++  + + +++     + +  
Sbjct: 153 SNNYLQIRGIKKTDE-GTYRCEG-------RILA--RGEINFKDIQVIVNVPPTVQARQS 202
Query: 231 ILNVKKD--ESVILPCSAQGNPLPTIKWYKQDSPV--EESDRIQRI----GSSLSISHVE 282
           I+N   +  +SV L C A G P PT+ W K   P+  EE D  + I     S L+I +V+
Sbjct: 203 IVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVD 262
Query: 283 ESDSGVWNCVANNSEGQ 299
           ++D   + C+A N  G+
Sbjct: 263 KNDEAEYVCIAENKAGE 279

>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure Length = 424

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 105/280 (37%), Gaps = 61/280 (21%)
Query: 44  KAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQ--MSAQVILGGELVEI- 100
           K ++ DG  +  +S +   +       AGM  C    +D+S Q  M   V++G  + ++ 
Sbjct: 38  KRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVV 97
Query: 101 -ASSNQVVVDVGHRIELHCRV-------------SPKRLSSAKAWLKDGLVLRRNSD--- 143
            + S+ + + VG ++ L+C                P      K  +   L  +  S+   
Sbjct: 98  LSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 157
Query: 144 --EVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGA 201
               L +D V R D G+Y C    G     +S  + +H+                     
Sbjct: 158 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE--------------------K 197
Query: 202 SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDS 261
             ++   G  SL E       A + E+ RI           P    G P P IKWYK   
Sbjct: 198 PFVAFGSGMESLVE-------ATVGERVRI-----------PAKYLGYPPPEIKWYKNGI 239
Query: 262 PVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDK 301
           P+E +  I + G  L+I  V E D+G +  +  N   ++K
Sbjct: 240 PLESNHTI-KAGHVLTIMEVSERDTGNYTVILTNPISKEK 278

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 94/255 (36%), Gaps = 42/255 (16%)
Query: 60  VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDV--GHRIELH 117
           +++++  + +DAG+YQC  S    +      ++  G L E +   +  V    G  + L 
Sbjct: 62  LVIMNPTKAQDAGVYQCLASNPVGTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVMLP 121
Query: 118 CRVSPKRLSSAKAWL---------KDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKY 168
           C         +  WL          DG      +   L + R    D G Y C       
Sbjct: 122 CNPPAHYPGLSYRWLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATS--- 178
Query: 169 HMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEK 228
           HM  S + +  +  + +                  L+    RL     K    A    E 
Sbjct: 179 HMDFSTKSVFSKFAQLN------------------LAAEDTRLFAPSIKARFPA----ET 216
Query: 229 HRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGV 288
           + ++     + V L C A GNP+P IKW K D  +  S +      +L I  V   D G 
Sbjct: 217 YALVG----QQVTLECFAFGNPVPRIKWRKVDGSL--SPQWTTAEPTLQIPSVSFEDEGT 270
Query: 289 WNCVANNSEGQDKMQ 303
           + C A NS+G+D +Q
Sbjct: 271 YECEAENSKGRDTVQ 285

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 37/243 (15%)
Query: 143 DEVLVLDRVQREDAGMY-------QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGV 195
           ++VL+  R +      Y       +  +E G  H L  G L+I    ++     YQC   
Sbjct: 22  EQVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIMNPTKAQDAGVYQCLAS 81
Query: 196 NKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDE--SVILPCSAQGN-PLP 252
           N +          G +   E        + F K     VK  E   V+LPC+   + P  
Sbjct: 82  NPV----------GTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVMLPCNPPAHYPGL 131
Query: 253 TIKW----YKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308
           + +W    +    P +    + +   +L I+    SD G ++C+A +        +F ++
Sbjct: 132 SYRWLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATSHMDFSTKSVFSKF 191
Query: 309 AHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTI 368
           A                +  ++ RL + +              + V L C A GNP+P I
Sbjct: 192 AQ-------------LNLAAEDTRLFAPSIKARFPAETYALVGQQVTLECFAFGNPVPRI 238
Query: 369 KYR 371
           K+R
Sbjct: 239 KWR 241

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSS--LSIS 279
           A  M +K      ++ E +   C A G+P P I W++    +EE+++    GS+  L++ 
Sbjct: 98  AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVR 157
Query: 280 HVEESDSGVWNCVANNSEGQDKMQLFIQ 307
           ++  SD G + C A N  G+D+ Q F+Q
Sbjct: 158 NIINSDGGPYVCRATNKAGEDEKQAFLQ 185

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 33/145 (22%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEES---DRIQRIGS-SLSISHVEESDSGVW 289
           V++  +  + C+A GNP P I W+K   PV+ S    RI+++ S +L I   EE+D G +
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKY 179
Query: 290 NCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFE----KHRI 345
            CVA NS G       ++Y+       S   L +        R+ + A  F      H I
Sbjct: 180 ECVATNSAG-------VRYS-------SPANLYV--------RVQNVAPRFSILPMSHEI 217
Query: 346 LNVKKDESVILPCSAQGNPLPTIKY 370
           +      +V + C A G+P+P +K+
Sbjct: 218 M---PGGNVNITCVAVGSPMPYVKW 239

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 133/319 (41%), Gaps = 65/319 (20%)
Query: 15  MSPSGQVVVDVGHRIELHCRV--SPK-RLSSAKAWLKDGLVLR---------RNSDEVLV 62
           + P   V   +G  I L C+V  +P+ R+    AW K+   LR         +N+   LV
Sbjct: 9   IEPLEHVEAAIGEPITLQCKVDGTPEIRI----AWYKEHTKLRSAPAYKMQFKNNVASLV 64
Query: 63  LDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDV----GHRIELHC 118
           +++V   D G Y C  + +   A  S+ V++  E     S  + + DV    G  +   C
Sbjct: 65  INKVDHSDVGEYTCK-AENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFEC 123
Query: 119 RVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE 175
           R++   P ++S    W KDG +L              ++DA +    I     H +++  
Sbjct: 124 RINGSEPLQVS----WYKDGELL--------------KDDANLQTSFI-----HNVAT-- 158
Query: 176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFE-KHRILNV 234
           L I Q D+S     Y C   N L  AS    +  +L+L+E++        F+ K   +++
Sbjct: 159 LQILQTDQS-HVGQYNCSASNPLGTAS----SSAKLTLSEHE----VPPFFDLKPVSVDL 209
Query: 235 KKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWN 290
              ES    C   G     I W K +  +      +       ++L++  V + D+G + 
Sbjct: 210 ALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYT 269
Query: 291 CVANNSEGQD--KMQLFIQ 307
           C A+N  G+D    QL +Q
Sbjct: 270 CYASNVAGKDSCSAQLGVQ 288

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 105/280 (37%), Gaps = 61/280 (21%)
Query: 44  KAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQ--MSAQVILGGELVEI- 100
           K ++ DG  +  +S +   +       AGM  C    +D+S Q  M   V++G  + ++ 
Sbjct: 168 KRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVV 227
Query: 101 -ASSNQVVVDVGHRIELHCRV-------------SPKRLSSAKAWLKDGLVLRRNSD--- 143
            + S+ + + VG ++ L+C                P      K  +   L  +  S+   
Sbjct: 228 LSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 287
Query: 144 --EVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGA 201
               L +D V R D G+Y C    G     +S  + +H+                     
Sbjct: 288 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE--------------------K 327
Query: 202 SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDS 261
             ++   G  SL E       A + E+ RI           P    G P P IKWYK   
Sbjct: 328 PFVAFGSGMESLVE-------ATVGERVRI-----------PAKYLGYPPPEIKWYKNGI 369
Query: 262 PVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDK 301
           P+E +  I + G  L+I  V E D+G +  +  N   ++K
Sbjct: 370 PLESNHTI-KAGHVLTIMEVSERDTGNYTVILTNPISKEK 408

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 238 ESVILPCSAQGNPLPTIKWYK-QDSPVEESDRIQRIGS-SLSISHVEESDSGVWNCVANN 295
           ES+ + C+A GNP P I W+K  ++ VE+S  + + G+ +L+I  V + D G++ C A +
Sbjct: 682 ESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACS 741
Query: 296 SEGQDKMQLFI 306
             G  K++ F 
Sbjct: 742 VLGCAKVEAFF 752

>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr Length = 106

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ----RIGSSLS 277
           AA++  K R + V + ES    C   G P+PT+ W ++   +  S R Q    +  S+  
Sbjct: 14  AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 73
Query: 278 ISHVEESDSGVWNCVANNSEGQDKMQL 304
           IS V+ SD G ++ V  NSEG+ + + 
Sbjct: 74  ISSVQASDEGNYSVVVENSEGKQEAEF 100

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 7/72 (9%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD---RIQRIGS----SLSISHVEESDS 286
           V++  +  + C+A GNP P I W+K   PV+ S+   RI+++ S    +L I   EESD 
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQ 179
Query: 287 GVWNCVANNSEG 298
           G + CVA NS G
Sbjct: 180 GKYECVATNSAG 191

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 128/336 (38%), Gaps = 64/336 (19%)
Query: 48  KDGLVLRRNSDEVLVLDRV----QREDAGMYQCHVSADDDSAQMSAQVIL---GGELVEI 100
           KD  V  R     LV+D        E  G YQC       +A +S ++ L      L   
Sbjct: 62  KDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTA-LSNRIRLQVSKSPLWPK 120
Query: 101 ASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQ 160
            + + VVV  G  + L C   P   S    W+   +       E +       +D  + Q
Sbjct: 121 ENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSM-------EPIT------QDKRVSQ 167
Query: 161 CHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLL 220
            H          +G+L    V   D    Y C      T  ++   N   L +   + + 
Sbjct: 168 GH----------NGDLYFSNVMLQDMQTDYSCNARFHFT-HTIQQKNPFTLKVLTTRGVA 216
Query: 221 --SAAKMFEKHRILN--VKKDESVILPCSAQGNPLPTIKWYKQ--DSPVEESDRIQRIGS 274
             + + M+ +    +  V +   ++L C A G P P I WYK+  D P +++ + +    
Sbjct: 217 ERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKA-KFENFNK 275
Query: 275 SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLL 334
           +L I++V E DSG + C+A+N  G  +  + ++     Y +           DE    +L
Sbjct: 276 ALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWL-----------DEPKNLIL 324
Query: 335 SAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKY 370
           +     E  R++           C A GNP PT+++
Sbjct: 325 APG---EDGRLV-----------CRANGNPKPTVQW 346

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEES---DRIQRIGS-SLSISHVEESDSGVW 289
           V++  +  + C+A GNP P I W+K   PV+ S    RI+++ S +L I   EE+D G +
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKY 179
Query: 290 NCVANNSEG 298
            CVA NS G
Sbjct: 180 ECVATNSAG 188

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEES---DRIQRIGS-SLSISHVEESDSGVW 289
           V++  +  + C+A GNP P I W+K   PV+ S    RI+++ S +L I   EE+D G +
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKY 179
Query: 290 NCVANNSEG 298
            CVA NS G
Sbjct: 180 ECVATNSAG 188

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVW 289
           V++  +  + C+A GNP P I W+K   PV+ S    RI       L I   EE+D G +
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKY 179
Query: 290 NCVANNSEG 298
            CVA+NS G
Sbjct: 180 ECVASNSAG 188

>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 238 ESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GSSLSISHVEESDSGVWNCV 292
           +SV L C A G P PT+ W K   P+E+ D  ++      GS L I  V++SD   + C+
Sbjct: 29  QSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSDEAEYICI 88
Query: 293 ANNSEGQDKMQLFIQ 307
           A N  G+    + ++
Sbjct: 89  AENKAGEQDATIHLK 103

>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule Type 1 Length = 209

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 53/143 (37%), Gaps = 24/143 (16%)
Query: 61  LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVV-----VDVGHRIE 115
           +    V RED G Y C VS +  ++    +V L   +V +  S   V       +G+R  
Sbjct: 70  ITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL---IVLVPPSKPTVNIPSSATIGNRAV 126
Query: 116 LHCRVSPKRLSSAKAWLKDGLVLRRNSDEV----------------LVLDRVQREDAGMY 159
           L C        S   W KDG+V+  N                    LV D +   D G Y
Sbjct: 127 LTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY 186
Query: 160 QCHIEDGKYHMLSSGELIIHQVD 182
            C   +G    ++S  + +  V+
Sbjct: 187 SCEARNGYGTPMTSNAVRMEAVE 209

>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The Muscle Protein Titin: A New Member Of The I Set Length = 100

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ----RIGSSLS 277
           ++++  K R + V + ES    C   G P+PT+ W ++   +  S R Q    +  S+  
Sbjct: 8   SSRILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 67
Query: 278 ISHVEESDSGVWNCVANNSEGQDKMQL 304
           IS V+ SD G ++ V  NSEG+ + + 
Sbjct: 68  ISSVQASDEGNYSVVVENSEGKQEAEF 94

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 118/292 (40%), Gaps = 43/292 (14%)
Query: 27  HRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD--------EVLVLDRVQREDAGMYQCHV 78
            ++ L CR      ++ + W  +G  L+   D        ++++ + V+ +DAG YQC V
Sbjct: 23  EKVTLTCRARANPPATYR-WKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQC-V 80
Query: 79  SADDDSAQMSAQVIL-GGELVEIASS--NQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG 135
           + +     +S +  L  G L E ++   + V +  G  +   C   P   + +  WL   
Sbjct: 81  ATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWL--- 137
Query: 136 LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESD--RYRSYQCR 193
             L    + +    R                ++   ++G L I + + SD   Y  +   
Sbjct: 138 --LNEFPNFIPADGR----------------RFVSQTTGNLYIAKTEASDLGNYSCFATS 179
Query: 194 GVNKLTGASLLSVNRGRLSLTENKRLLSA--AKMFEKHRILNVKKDESVILPCSAQGNPL 251
            ++ +T +     ++  L+  + ++   +  AK       L     + V L C A GNP+
Sbjct: 180 HIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALT---GQMVTLECFAFGNPV 236
Query: 252 PTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ 303
           P IKW K D    ++ +       L I +V+  D G + C A N +G+D  Q
Sbjct: 237 PQIKWRKLDG--SQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQ 286

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 244 CSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEG 298
           C A G P P ++W +   P+   +RI+  G  L  S +   DSG++ CVA N  G
Sbjct: 316 CVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHG 370

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPV----EESDRIQRIGSSL- 276
           + ++ E    L VKK+E   L C  +G P PTI+W+K   PV    ++S R+Q    +L 
Sbjct: 9   SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 277 ---SISHVEESDSGVWNCVANNSEGQ 299
              ++   +E D G + CVA N  GQ
Sbjct: 69  FYRTMQGKKEQDGGEYWCVAKNRVGQ 94

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPV----EESDRIQRIGSSL- 276
           + ++ E    L VKK+E   L C  +G P PTI+W+K   PV    ++S R+Q    +L 
Sbjct: 9   SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 277 ---SISHVEESDSGVWNCVANNSEGQ 299
              ++   +E D G + CVA N  GQ
Sbjct: 69  FYRTMQGKKEQDGGEYWCVAKNRVGQ 94

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 73/210 (34%), Gaps = 26/210 (12%)
Query: 99  EIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQ-----R 153
           E     Q+V   G  +EL C            W+KDG  L  +   ++   R+Q      
Sbjct: 11  EPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASH 70
Query: 154 EDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSL 213
           ED+G Y C         L+   L    V  +D   S            +   V+ G    
Sbjct: 71  EDSGAYSCR------QRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDT--GVDTGAPYW 122
Query: 214 TENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG 273
           T  +R+          ++L V    +V   C A GNP P+I W K         RI  I 
Sbjct: 123 TRPERM--------DKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIK 174
Query: 274 -----SSLSISHVEESDSGVWNCVANNSEG 298
                 SL +  V  SD G + CV  N  G
Sbjct: 175 LRHQQWSLVMESVVPSDRGNYTCVVENKFG 204

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 238 ESVILPC-SAQGNPLPTIKWYKQDSPVEESD-RIQRIGSSLSISHVEESDSGVWNCVANN 295
           E  ++ C   +G+P PTI W K  SP+++ D RI   G  L I++  +SD+G + CV  N
Sbjct: 127 EPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTN 186
Query: 296 SEGQ 299
             G+
Sbjct: 187 MVGE 190

>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homolog 2 Length = 100

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 237 DESVILPCSAQGNPLPTIKWYKQDSPVEESD---RIQRIGSSLSISHVEESDSGVWNCVA 293
           D + +L C A G+PLP I W K+       D    IQ  G +L I ++  SD+G + CVA
Sbjct: 23  DGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG-TLQIKNLRISDTGTYTCVA 81
Query: 294 NNSEGQ 299
            +S G+
Sbjct: 82  TSSSGE 87

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 130/358 (36%), Gaps = 62/358 (17%)
Query: 31  LHCRVSPKRLSSAKAWLKDG---------LVLRRNSDEVLVLDRVQREDAGMYQCHVSAD 81
           L C +         +W KDG           LR++   ++ L R Q  D G YQC   A+
Sbjct: 26  LECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFL-RPQASDEGHYQCF--AE 82
Query: 82  DDSAQMSAQVILGGELVEIAS---SNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL 138
             +   S++VI   +   IAS   +++     G   +L C +          W K     
Sbjct: 83  TPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGA 142
Query: 139 RRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKL 198
             N+D   V D  +R  AG       DG  +       I+ + D SD Y+ Y C   N  
Sbjct: 143 DPNAD---VTDFDRRITAG------PDGNLYF-----TIVTKEDVSDIYK-YVCTAKNAA 187
Query: 199 TGASLLSVNRGRLSLTENKRLLSAAKMFEK-HRILNVKKDESVILPCSAQGNPLPTIKWY 257
               ++ V      +T++        + +   + +  K  +  ++ C    NP+    ++
Sbjct: 188 VDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYF 247
Query: 258 KQDSPV--EESDRIQR----IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHG 311
           K    V     DRI R     G  L        D GV+ C  +N  G+ +          
Sbjct: 248 KNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK--------- 298
Query: 312 KYHMLSSGELIIHQVDEKNKRLLSAAKMFEK-HRILNVKKDESVILPCSAQGNPLPTI 368
             H L                ++SA K  +K  +++ VK+ + V +PC   G P P +
Sbjct: 299 --HSLKL-------------TVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNV 341

>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7 Length = 108

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 238 ESVILPCSAQGNPLPTIKWYK-QDSPVEESDRIQRIGS-SLSISHVEESDSGVWNCVANN 295
           ES+ + C+A GNP P I W+K  ++ VE+S  + + G+ +L+I  V + D G++ C A +
Sbjct: 26  ESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACS 85
Query: 296 SEGQDKMQLF 305
             G  K++ F
Sbjct: 86  VLGCAKVEAF 95

>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homo1 Length = 118

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD-RIQRIGSS-LSISHVEESDSGVWNC 291
           V  D + +L C A G+P+PTI W K    V   D RI+++ +  L I + +  D+G + C
Sbjct: 20  VAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTC 79
Query: 292 VANNSEGQDKMQLFIQ 307
           +A+   G+     +I+
Sbjct: 80  IASTPSGEATWSAYIE 95

>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 117

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVE---ESDRIQRI----GS 274
             ++ E    L V K E   L C A+G P PTI+WYK    VE   +  R  R+    GS
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 275 --SLSISHVEES--DSGVWNCVANNSEGQ 299
              L I H  +S  D GV+ CVA N  G+
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGE 97

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS-----SLSISHVEESDS 286
           +  K  E+  L C   G PLP IKWY+    + +S R  ++ S     +L++   E+ D 
Sbjct: 17  VTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQS-RKYKMSSDGRTHTLTVMTEEQEDE 75
Query: 287 GVWNCVANNSEGQ 299
           GV+ C+A N  G+
Sbjct: 76  GVYTCIATNEVGE 88

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 239 SVILPCSAQGNPLPTIKWYKQDSPVEESD-RIQRIGSSLSISHVEESDSGVWNCVANNSE 297
           +V++ C A GNP P I W K  + V+ S+ R       L I +  E D G + CVA NS 
Sbjct: 127 TVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSM 186
Query: 298 GQD 300
           G +
Sbjct: 187 GTE 189

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 239 SVILPCSAQGNPLPTIKWYKQDSPVEESD-RIQRIGSSLSISHVEESDSGVWNCVANNSE 297
           +V++ C A GNP P I W K  + V+ S+ R       L I +  E D G + CVA NS 
Sbjct: 129 TVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSM 188
Query: 298 GQD 300
           G +
Sbjct: 189 GTE 191

>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 244 CSAQGNPLPTIKWYKQDSPVEES-----DRIQRIGSSLSISHVEESDSGVWNCVANNSEG 298
           C  +G P P + W+K D+PV+ES     D  +    SL+IS V   D   + C A NS G
Sbjct: 63  CKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG 122
Query: 299 Q 299
           +
Sbjct: 123 E 123

>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 244 CSAQGNPLPTIKWYKQDSPVEES-----DRIQRIGSSLSISHVEESDSGVWNCVANNSEG 298
           C  +G P P + W+K D+PV+ES     D  +    SL+IS V   D   + C A NS G
Sbjct: 63  CKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG 122
Query: 299 Q 299
           +
Sbjct: 123 E 123

>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 16/151 (10%)
Query: 26  GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHV--SADDD 83
           G  + L C  +     +  +WL DG + +   +  L +  +  +++G+Y C    SA   
Sbjct: 396 GVNLSLSCHAA-SNPPAQYSWLIDGNIQQHTQE--LFISNITEKNSGLYTCQANNSASGH 452
Query: 84  SAQMSAQVILGGELVE--IASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR-- 139
           S      + +  EL +  I+S+N   V+    +   C   P+  ++   W  +G  L   
Sbjct: 453 SRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCE--PEAQNTTYLWWVNGQSLPVS 510
Query: 140 -----RNSDEVLVLDRVQREDAGMYQCHIED 165
                 N +  L L  V R DA  Y C I++
Sbjct: 511 PRLQLSNGNRTLTLFNVTRNDARAYVCGIQN 541

>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 103/282 (36%), Gaps = 62/282 (21%)
Query: 26  GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSA 85
           G  + L C  +     +  +W  +G    + S + L +  +   ++G Y C     D   
Sbjct: 218 GENLNLSCHAA-SNPPAQYSWFVNGTF--QQSTQELFIPNITVNNSGSYTCQAHNSDTGL 274
Query: 86  QMSA--QVILGGELVE--IASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR-- 139
             +    + +  E  +  I S+N   V+    + L C   P+  ++   W  +   L   
Sbjct: 275 NRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCE--PEIQNTTYLWWVNNQSLPVS 332
Query: 140 -----RNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRG 194
                 N +  L L  V R D G Y+C I++         EL    VD SD         
Sbjct: 333 PRLQLSNDNRTLTLLSVTRNDVGPYECGIQN---------EL---SVDHSD--------- 371
Query: 195 VNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTI 254
                   +L+V  G      +   +S +  + +  +       ++ L C A  NP    
Sbjct: 372 ------PVILNVLYG-----PDDPTISPSYTYYRPGV-------NLSLSCHAASNPPAQY 413
Query: 255 KWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNS 296
            W    +       IQ+    L IS++ E +SG++ C ANNS
Sbjct: 414 SWLIDGN-------IQQHTQELFISNITEKNSGLYTCQANNS 448

>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain Length = 100

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI-----QRIGSSLSISHVE 282
           + R+  V    +V   C A GNP+PT++W K     ++  RI     +    SL +  V 
Sbjct: 14  EKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVV 73
Query: 283 ESDSGVWNCVANNSEG 298
            SD G + CV  N  G
Sbjct: 74  PSDKGNYTCVVENEYG 89

>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma Translocation Protein 1 Length = 218

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/190 (20%), Positives = 72/190 (37%), Gaps = 30/190 (15%)
Query: 111 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHM 170
           G  ++L CR +       + W K    +   +   L+ + V  +DAG Y C + +     
Sbjct: 33  GQFVKLCCRATGHPFVQYQ-WFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFE 91
Query: 171 LSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHR 230
            S       Q+D  D   S+Q                R    ++E+K  +      +K  
Sbjct: 92  FSQWS----QLDVCDIPESFQ----------------RSVDGVSESKLQICVEPTSQK-- 129
Query: 231 ILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWN 290
              +    +++L C A G+P+P  +W+K + P+    +   +   + + H        W 
Sbjct: 130 ---LMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEH----QGTYWC 182
Query: 291 CVANNSEGQD 300
            V N+ + QD
Sbjct: 183 HVYNDRDSQD 192

>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast Growth Factor Length = 104

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI-----QRIGSSLSISHVE 282
           + R+  V    +V   C A GNP+PT++W K     ++  RI     +    SL +  V 
Sbjct: 18  EKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVV 77
Query: 283 ESDSGVWNCVANNSEG 298
            SD G + CV  N  G
Sbjct: 78  PSDKGNYTCVVENEYG 93

>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From Myosin Light Chain Kinase, Smooth Muscle Length = 99

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG-SSLSISHVEESDSGVWNCV 292
           V + +  +L CS +G P+P I W     P++ +      G + L I      D G + C+
Sbjct: 23  VIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCL 82
Query: 293 ANNSEGQ 299
           A N+ GQ
Sbjct: 83  AENALGQ 89

>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2 Length = 105

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI-----QRIGSSLSISHVE 282
           + R+  V    +V   C A GNP+PT++W K     ++  RI     +    SL +  V 
Sbjct: 19  EKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVV 78
Query: 283 ESDSGVWNCVANNSEG 298
            SD G + CV  N  G
Sbjct: 79  PSDKGNYTCVVENEYG 94

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	371
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	9e-50
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	9e-30
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	4e-13
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-48
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-43
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	9e-43
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	8e-36
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-35
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-34
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-26
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-17
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-48
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	8e-32
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	4e-47
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-36
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-45
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-37
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-14
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-45
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-37
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-27
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-15
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	9e-45
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-42
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-41
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-35
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-42
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	9e-32
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	6e-42
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-28
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-18
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-41
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-36
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-33
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	8e-32
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-24
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-15
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	6e-41
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-38
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-34
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-34
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-09
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	5e-39
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	6e-27
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	4e-38
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-30
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-18
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-37
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-25
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-06
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-37
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-34
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-32
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-20
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-12
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-37
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-30
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	8e-28
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-20
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-20
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-12
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	5e-36
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	5e-22
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	7e-18
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-13
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	7e-35
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	9e-21
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-19
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-09
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-33
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	9e-26
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	9e-13
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-07
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-33
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	9e-30
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-08
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	5e-33
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-19
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-16
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-12
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-32
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-27
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	5e-06
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-31
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	4e-19
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	6e-19
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	4e-11
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	4e-06
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-30
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	4e-29
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	5e-22
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-20
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	6e-29
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	6e-18
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	4e-14
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-11
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	9e-29
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	7e-21
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-13
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	7e-06
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-28
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-17
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-11
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	8e-06
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-28
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	9e-25
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	5e-04
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-28
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	3e-22
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-16
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	6e-09
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	6e-28
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-20
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-14
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	8e-09
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-07
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-27
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	5e-20
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-18
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	5e-08
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-26
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-22
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	4e-14
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-26
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	7e-22
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	3e-15
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	3e-08
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-26
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	1e-13
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	6e-11
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-06
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-25
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	8e-25
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-23
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	6e-11
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-25
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	6e-23
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-17
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	7e-05
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	1e-25
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	1e-19
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	3e-15
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-07
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-25
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	7e-22
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	5e-18
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	4e-08
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	6e-25
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-19
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	5e-06
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-05
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-24
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-19
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-17
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	3e-24
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-22
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-18
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	4e-24
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	3e-21
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-14
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	7e-06
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	6e-24
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-23
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	5e-17
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	8e-24
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	4e-20
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	9e-15
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	8e-09
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-23
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-23
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	5e-16
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	1e-23
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-22
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	1e-17
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	1e-08
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-23
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	4e-16
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-14
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-07
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	4e-23
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	8e-20
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	8e-17
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-22
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-18
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-17
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	7e-06
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-22
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-21
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-18
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-12
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-09
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	6e-05
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	6e-22
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	3e-21
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	9e-20
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	4e-09
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-21
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-16
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	9e-11
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-08
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-21
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	8e-18
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-17
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-05
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-21
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-16
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-21
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	3e-15
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-10
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	2e-21
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	4e-12
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	5e-21
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	4e-19
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-17
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	3e-08
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-20
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	3e-17
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	8e-12
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	4e-07
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	5e-20
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-16
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	7e-16
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	5e-20
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-10
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	1e-08
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	5e-20
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	5e-16
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	6e-13
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	6e-20
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	4e-07
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	3e-06
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	6e-20
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	5e-14
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	6e-20
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	3e-08
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	5e-07
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	7e-20
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	3e-13
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	3e-13
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	5e-08
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	9e-20
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	9e-20
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-19
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-19
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	7e-19
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-18
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	8e-12
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-08
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	4e-19
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	6e-18
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	4e-13
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	4e-13
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	6e-04
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	4e-19
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	9e-08
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-06
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	5e-19
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	5e-12
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	4e-09
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	6e-19
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	1e-13
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-08
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	4e-06
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	6e-19
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	2e-06
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	8e-05
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	6e-19
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	7e-07
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	6e-06
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	6e-19
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	4e-09
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-07
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	9e-19
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	4e-18
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-17
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-06
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	1e-18
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	8e-12
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	3e-09
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-18
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	4e-07
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	4e-06
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	1e-18
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-05
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-05
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	1e-18
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-06
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	4e-06
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	2e-18
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	6e-08
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	2e-06
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	3e-18
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-17
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	4e-13
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-05
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	5e-18
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-16
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	6e-07
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	5e-18
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	4e-14
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-11
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	6e-18
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	1e-06
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	6e-06
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	9e-18
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-07
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	5e-05
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	9e-18
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	3e-04
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	5e-04
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	1e-17
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	4e-14
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	2e-13
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-17
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-12
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	7e-12
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-04
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	2e-17
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	2e-06
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	3e-06
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	3e-17
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	3e-06
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-05
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	4e-17
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	1e-04
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	9e-04
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	6e-17
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	4e-08
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	2e-07
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	7e-17
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	1e-05
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	4e-05
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	8e-17
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-15
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-10
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-04
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	1e-16
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	2e-05
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	2e-05
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	1e-16
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	9e-12
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	2e-06
2ens_A	96	Advanced glycosylation END product-specific recept	1e-16
2ens_A	96	Advanced glycosylation END product-specific recept	7e-13
2ens_A	96	Advanced glycosylation END product-specific recept	2e-10
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	1e-16
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-11
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-10
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-04
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-16
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	1e-08
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	4e-07
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-16
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	6e-15
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	3e-09
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-07
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	3e-16
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	9e-14
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	7e-11
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	7e-16
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-04
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-16
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-10
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	8e-16
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	7e-07
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	3e-06
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	1e-15
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	6e-07
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-06
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	4e-15
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	9e-06
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	7e-05
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	5e-15
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	8e-11
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	1e-09
1he7_A	126	High affinity nerve growth factor receptor; transf	8e-15
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	2e-14
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	1e-06
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-14
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	9e-07
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	5e-06
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	4e-14
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	5e-05
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	9e-14
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-13
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-10
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-09
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	3e-13
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	9e-09
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	3e-07
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	5e-13
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	7e-08
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	2e-07
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	2e-12
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	9e-07
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	1e-06
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	2e-12
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	6e-08
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	1e-07
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	3e-12
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-07
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	3e-06
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	3e-12
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	1e-08
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-07
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	5e-12
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	8e-07
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	8e-07
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	7e-12
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	4e-07
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-06
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	1e-11
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	7e-07
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	8e-07
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	1e-11
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	2e-06
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	8e-06
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	1e-11
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	6e-05
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	9e-04
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	2e-11
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	8e-09
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	2e-06
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-11
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	4e-08
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	7e-08
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-11
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	4e-06
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	4e-06
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	3e-11
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	1e-06
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	2e-06
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	5e-11
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	3e-07
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	1e-06
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	6e-11
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	9e-08
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	6e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	7e-11
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	8e-11
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	9e-11
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	3e-08
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	2e-10
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	2e-06
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	2e-10
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	2e-04
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-10
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-10
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-07
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	3e-07
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	3e-10
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	2e-08
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-04
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	8e-10
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	3e-06
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	4e-05
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	9e-10
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	1e-06
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	1e-09
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	3e-07
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	5e-07
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	1e-09
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	2e-09
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	5e-09
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	5e-09
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	9e-09
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	8e-08
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	1e-08
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	3e-07
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	6e-05
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	1e-08
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	3e-08
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	5e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-04
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	6e-08
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	8e-04
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	6e-08
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	2e-06
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	6e-06
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	9e-08
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	1e-07
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	2e-04
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	6e-04
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	2e-07
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	7e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-05
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	2e-07
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	6e-07
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	1e-05
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	2e-07
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	7e-06
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	8e-05
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	6e-07
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	9e-05
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	1e-06
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	1e-05
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	8e-05
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	2e-06
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	3e-06
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	7e-04
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	6e-06
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	8e-06
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	2e-05
3nvq_A	590	Semaphorin-7A; beta-propeller, signaling, signalin	3e-05
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	3e-05
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	3e-05
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	4e-05
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	4e-05
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	6e-05
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	7e-05
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	7e-05
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	8e-05
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	1e-04
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	2e-04
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	2e-04
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	3e-04
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	3e-04
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	3e-04
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	3e-04
2bnu_A	203	TCR alpha chain, T-cell receptor alpha chain C reg	4e-04
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	5e-04
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	5e-04
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	6e-04
3gsn_A	199	RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human	6e-04
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	7e-04
4ei6_A	208	Valpha1 XV19 type II natural killer T cell recept	7e-04

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  170 bits (433), Expect = 9e-50
 Identities = 81/384 (21%), Positives = 126/384 (32%), Gaps = 74/384 (19%)

Query: 12  SIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVL----- 63
                P+ ++        E+ C+ S  P   +     W++       +   +  +     
Sbjct: 5   VFLKEPTNRIDFSNSTGAEIECKASGNPMPEII----WIRSDGTAVGDVPGLRQISSDGK 60

Query: 64  ---------DRVQREDAGMYQCHVSADDDSAQM-SAQVILGGELVEIASSNQVVVDVGHR 113
                    D  Q   A +Y C       S       V         A  N+  V  G+ 
Sbjct: 61  LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNS 120

Query: 114 IELHCRV--SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML 171
             + C +           +W  D         E                    DGKY +L
Sbjct: 121 AVIKCLIPSFVADFVEVVSWHTDEEENYFPGAE-------------------YDGKYLVL 161

Query: 172 SSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRI 231
            SGEL I +V   D Y+SYQCR  ++LTG + LS  +GRL +TE     +        + 
Sbjct: 162 PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKP 221

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDS------PVEESDRIQRIGSSLSISHVEESD 285
           L +    ++ L C AQG P P+ +WYK          V  +DR++++  +L I      D
Sbjct: 222 LELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVED 281

Query: 286 SGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRI 345
           SG + CV NNS G +                    L +           +          
Sbjct: 282 SGKYLCVVNNSVGGES---------------VETVLTVT----------APLSAKIDPPT 316

Query: 346 LNVKKDESVILPCSAQGNPLPTIK 369
             V      +  C   GNP+ T+ 
Sbjct: 317 QTVDFGRPAVFTCQYTGNPIKTVS 340

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  116 bits (293), Expect = 9e-30
 Identities = 56/313 (17%), Positives = 81/313 (25%), Gaps = 69/313 (22%)

Query: 21  VVVDVGHRIELHCRV--SPKRLSSAKAWLKDGLVLRRNSDE-----------VLVLDRVQ 67
             V  G+   + C +           +W  D         E            L +  V 
Sbjct: 113 EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVG 172

Query: 68  REDA-GMYQCHV----------SADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIEL 116
            ED    YQC            SA      ++  +              + + V H I L
Sbjct: 173 PEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISL 232

Query: 117 HCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS 173
            C     P         W K      R    VL                          S
Sbjct: 233 LCPAQGFPAPSFR----WYKFIEGTTRKQAVVL-------------------NDRVKQVS 269

Query: 174 GELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILN 233
           G LII      D  + Y C   N + G S        L++T                   
Sbjct: 270 GTLIIKDAVVEDSGK-YLCVVNNSVGGES----VETVLTVTA------PLSAKIDPPTQT 318

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVA 293
           V      +  C   GNP+ T+ W K    +  S+        L I  V++ D G++ C  
Sbjct: 319 VDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES------VLRIESVKKEDKGMYQCFV 372

Query: 294 NNSEG--QDKMQL 304
            N     +   +L
Sbjct: 373 RNDRESAEASAEL 385

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 68.8 bits (168), Expect = 4e-13
 Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 9/93 (9%)

Query: 5   IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVL 61
           + V + LS ++ P  Q V D G      C+ +    K +S    W+KDG  +  +S+ VL
Sbjct: 302 LTVTAPLSAKIDPPTQTV-DFGRPAVFTCQYTGNPIKTVS----WMKDGKAIG-HSESVL 355

Query: 62  VLDRVQREDAGMYQCHVSADDDSAQMSAQVILG 94
            ++ V++ED GMYQC V  D +SA+ SA++ LG
Sbjct: 356 RIESVKKEDKGMYQCFVRNDRESAEASAELKLG 388

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  173 bits (441), Expect = 2e-48
 Identities = 78/386 (20%), Positives = 124/386 (32%), Gaps = 77/386 (19%)

Query: 12  SIEMSPSGQVVVDVGHRIELHCRV--SPK-RLSSAKAWLKDGLVLRRNSD---------- 58
                P+ ++        E+ C+   +P   +     W++       +            
Sbjct: 40  VFLKEPTNRIDFSNSTGAEIECKASGNPMPEII----WIRSDGTAVGDVPGLRQISSDGK 95

Query: 59  ----EVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQ-VVVDVGHR 113
                    D  Q   A +Y C       S       +         +      V  G+ 
Sbjct: 96  LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNS 155

Query: 114 IELHCRVSPKRLSSAKA---WLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHM 170
             + C + P  ++       W  D         E                    DGKY +
Sbjct: 156 AVIKCLI-PSFVADFVEVVSWHTDEEENYFPGAE-------------------YDGKYLV 195

Query: 171 LSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF-EKH 229
           L SGEL I +V   D Y+SYQCR  ++LTG + LS  +GRL +TE         +   K 
Sbjct: 196 LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKF 255

Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYK------QDSPVEESDRIQRIGSSLSISHVEE 283
            +       ++ L C AQG P+P  +WYK      +   V  +DR++++  +L I     
Sbjct: 256 DMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVV 315

Query: 284 SDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH 343
            DSG + CV NNS G +                    L +           +        
Sbjct: 316 EDSGKYLCVVNNSVGGES---------------VETVLTVT----------APLSAKIDP 350

Query: 344 RILNVKKDESVILPCSAQGNPLPTIK 369
               V      +  C   GNP+ T+ 
Sbjct: 351 PTQTVDFGRPAVFTCQYTGNPIKTVS 376

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  159 bits (403), Expect = 3e-43
 Identities = 82/371 (22%), Positives = 141/371 (38%), Gaps = 68/371 (18%)

Query: 5   IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLD 64
           + V + LS ++ P  Q V D G      C+ +   + +   W+KDG  +  +S+ VL ++
Sbjct: 338 LTVTAPLSAKIDPPTQTV-DFGRPAVFTCQYTGNPIKTVS-WMKDGKAIG-HSESVLRIE 394

Query: 65  RVQREDAGMYQCHVSADDDSAQMSAQVILGGEL----VEIASSNQVVVDVGHRIELHCRV 120
            V++ED GMYQC V  D +SA+ SA++ LGG      +  A   + +   G  + L C  
Sbjct: 395 SVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETME-PGPSVFLKCVA 453

Query: 121 --SPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELI 177
             +P   +S    W  DG  +  N+D   V   V                        L 
Sbjct: 454 GGNPTPEIS----WELDGKKIA-NNDRYQVGQYVTVNGDV---------------VSYLN 493

Query: 178 IHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKD 237
           I  V  +D    Y+C   +K+  A     +  +L++              +     +   
Sbjct: 494 ITSVHANDGGL-YKCIAKSKVGVAE----HSAKLNVYG-------LPYIRQMEKKAIVAG 541

Query: 238 ESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS-SLSISHVE-ESDSGVWNCVANN 295
           E++I+ C   G P+ +I W + +  +  + + +   + +L I +VE  SD   + CVA N
Sbjct: 542 ETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKN 601

Query: 296 SEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVI 355
            EG                   S E+ +  +                      +  + + 
Sbjct: 602 QEGYSARG--------------SLEVQVMVLPRIIPFAFEE---------GPAQVGQYLT 638

Query: 356 LPCSAQGNPLP 366
           L CS  G  LP
Sbjct: 639 LHCSVPGGDLP 649

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  157 bits (399), Expect = 9e-43
 Identities = 66/377 (17%), Positives = 122/377 (32%), Gaps = 87/377 (23%)

Query: 13  IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE-----------VL 61
           + ++            + L C      +   + W K      R                L
Sbjct: 250 VSLAKFDMKTYSGSSTMALLCPAQGYPVPVFR-WYKFIEGTTRKQAVVLNDRVKQVSGTL 308

Query: 62  VLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVS 121
           ++     ED+G Y C V+       +   + +   L          VD G      C+ +
Sbjct: 309 IIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYT 368

Query: 122 PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQV 181
              + +   W+KDG  +  +S+ VL ++ V++ED GMYQC + + +    +S EL +   
Sbjct: 369 GNPIKTVS-WMKDGKAIG-HSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL--- 423

Query: 182 DESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVI 241
                                                      + +  +   ++   SV 
Sbjct: 424 -----------------------------------GGRFDPPVIRQAFQEETMEPGPSVF 448

Query: 242 LPCSAQGNPLPTIKWYKQDSPVEESDRIQ---------RIGSSLSISHVEESDSGVWNCV 292
           L C A GNP P I W      +  +DR Q          + S L+I+ V  +D G++ C+
Sbjct: 449 LKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCI 508

Query: 293 ANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDE 352
           A +  G  +                S +L ++                 +     +   E
Sbjct: 509 AKSKVGVAE---------------HSAKLNVY-----------GLPYIRQMEKKAIVAGE 542

Query: 353 SVILPCSAQGNPLPTIK 369
           ++I+ C   G P+ +I 
Sbjct: 543 TLIVTCPVAGYPIDSIV 559

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  137 bits (347), Expect = 8e-36
 Identities = 69/386 (17%), Positives = 119/386 (30%), Gaps = 97/386 (25%)

Query: 12  SIEMSPSGQVVVDVGHRIELHCRV--SPK-RLSSAKAWLKDGLVLRRNS----------- 57
            I  +   + +   G  + L C    +P   +S    W  DG  +  N            
Sbjct: 431 VIRQAFQEETME-PGPSVFLKCVAGGNPTPEIS----WELDGKKIANNDRYQVGQYVTVN 485

Query: 58  ---DEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVE----IASSNQVVVDV 110
                 L +  V   D G+Y+C   +    A+ SA++      V     I    +  +  
Sbjct: 486 GDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLN-----VYGLPYIRQMEKKAIVA 540

Query: 111 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHM 170
           G  + + C V+   + S   W +D   L  N                         K  +
Sbjct: 541 GETLIVTCPVAGYPIDSIV-WERDNRALPINR------------------------KQKV 575

Query: 171 LSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEK-H 229
             +G LII  V+ +    +Y C   N+   ++     RG L +     ++   ++     
Sbjct: 576 FPNGTLIIENVERNSDQATYTCVAKNQEGYSA-----RGSLEVQ----VMVLPRIIPFAF 626

Query: 230 RILNVKKDESVILPCSAQGNPLP-TIKWYKQDSPVEESDRIQRI-----GSSLSISHVEE 283
                +  + + L CS  G  LP  I W      + E   I        GS L+I  VE 
Sbjct: 627 EEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEA 686

Query: 284 SDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH 343
           S +G + C A N  G  +                +  L ++             +   + 
Sbjct: 687 SHAGNFTCHARNLAGHQQ---------------FTTPLNVY----------VPPRWILEP 721

Query: 344 RILNVKKDESVILPCSAQGNPLPTIK 369
                 +     + C A G P P + 
Sbjct: 722 TDKAFAQGSDAKVECKADGFPKPQVT 747

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  136 bits (345), Expect = 1e-35
 Identities = 61/333 (18%), Positives = 112/333 (33%), Gaps = 61/333 (18%)

Query: 5   IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS------D 58
           + V     I         +  G  + + C V+   + S   W +D   L  N       +
Sbjct: 522 LNVYGLPYIRQMEK--KAIVAGETLIVTCPVAGYPIDSIV-WERDNRALPINRKQKVFPN 578

Query: 59  EVLVLDRVQR-EDAGMYQCHVS-ADDDSAQMSAQVILGGELVEIASSNQ-VVVDVGHRIE 115
             L+++ V+R  D   Y C     +  SA+ S +V +      I  + +     VG  + 
Sbjct: 579 GTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLT 638

Query: 116 LHCRVS----PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML 171
           LHC V     P  +     W  DG  +               ED G+    +        
Sbjct: 639 LHCSVPGGDLPLNID----WTLDGQAIS--------------EDLGITTSRVGR------ 674

Query: 172 SSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRI 231
               L I  V+ S     + C   N   G    +     L++          +   +   
Sbjct: 675 RGSVLTIEAVEASHAGN-FTCHARNLA-GHQQFTT---PLNVYV------PPRWILEPTD 723

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYK-------QDSPVEESDRIQRIGSSLSISHVEES 284
               +     + C A G P P + W K       +   +++SD I+    +L + +++++
Sbjct: 724 KAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKT 783

Query: 285 DSGVWNCVANNSEGQDK---MQLFIQYAHGKYH 314
           + G + C A N  G      + + +Q  H  +H
Sbjct: 784 NEGYYLCEAINGIGSGLSAVIMISVQAHHHHHH 816

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  133 bits (336), Expect = 2e-34
 Identities = 67/392 (17%), Positives = 109/392 (27%), Gaps = 87/392 (22%)

Query: 4   FIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSDEV 60
            ++   +   E   + +  V  G+   + C + P  ++       W  D         E 
Sbjct: 132 HVRAVVAQYYEADVN-KEHVIRGNSAVIKCLI-PSFVADFVEVVSWHTDEEENYFPGAEY 189

Query: 61  -----------LVLDRVQREDA-GMYQCHVS---ADDDSAQMSAQVILGGE--------L 97
                      L +  V  ED    YQC        +     +   ++  E        +
Sbjct: 190 DGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKV 249

Query: 98  VEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAG 157
           V +A  +         + L C      +   + W K      R    VL           
Sbjct: 250 VSLAKFDMKTYSGSSTMALLCPAQGYPVPVFR-WYKFIEGTTRKQAVVL----------- 297

Query: 158 MYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENK 217
                          SG LII      D  + Y C   N + G S        L++T   
Sbjct: 298 --------NDRVKQVSGTLIIKDAVVEDSGK-YLCVVNNSVGGES----VETVLTVTA-- 342

Query: 218 RLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLS 277
                           V      +  C   GNP+ T+ W K    +  S+        L 
Sbjct: 343 ----PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES------VLR 392

Query: 278 ISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAA 337
           I  V++ D G++ C   N     +               +S EL +              
Sbjct: 393 IESVKKEDKGMYQCFVRNDRESAE---------------ASAELKL-------GGRFDPP 430

Query: 338 KMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
            + +  +   ++   SV L C A GNP P I 
Sbjct: 431 VIRQAFQEETMEPGPSVFLKCVAGGNPTPEIS 462

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  110 bits (275), Expect = 2e-26
 Identities = 41/332 (12%), Positives = 88/332 (26%), Gaps = 74/332 (22%)

Query: 61  LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGEL---VEIASSNQVVVDVGHRIELH 117
           + +   + +   ++         S  ++A      +         +N++        E+ 
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60

Query: 118 CRV--SPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG 174
           C+   +P   +     W++         D   V D                G   + S G
Sbjct: 61  CKASGNPMPEII----WIRS--------DGTAVGD--------------VPGLRQISSDG 94

Query: 175 ELIIHQVDESDRYR-----SYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKH 229
           +L+       D  +      Y C   N+           G +   +       A+ +E  
Sbjct: 95  KLVFPPFRAEDYRQEVHAQVYACLARNQF----------GSIISRDVHVRAVVAQYYEAD 144

Query: 230 -RILNVKKDESVILPC---SAQGNPLPTIKWYKQDSPV-----EESDRI-QRIGSSLSIS 279
               +V +  S ++ C   S   + +  + W+  +        E   +        L I 
Sbjct: 145 VNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIR 204

Query: 280 HVEESDS-GVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAK 338
            V   D    + C   +    +                         V  +         
Sbjct: 205 EVGPEDGYKSYQCRTKHRLTGET---------------RLSATKGRLVITEPISSAVPKV 249

Query: 339 MF-EKHRILNVKKDESVILPCSAQGNPLPTIK 369
           +   K  +       ++ L C AQG P+P  +
Sbjct: 250 VSLAKFDMKTYSGSSTMALLCPAQGYPVPVFR 281

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 81.9 bits (202), Expect = 5e-17
 Identities = 35/189 (18%), Positives = 59/189 (31%), Gaps = 37/189 (19%)

Query: 2   QLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS----PKRLSSAKAWLKDGLVLRRN- 56
            L +QV     I      +    VG  + LHC V     P  +     W  DG  +  + 
Sbjct: 610 SLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNID----WTLDGQAISEDL 665

Query: 57  ---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVV 107
                       VL ++ V+   AG + CH        Q +  + +      I       
Sbjct: 666 GITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKA 725

Query: 108 VDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRN------------SDEVLVLDRVQ 152
              G   ++ C+    PK +++    W K                     +  L +D +Q
Sbjct: 726 FAQGSDAKVECKADGFPKPQVT----WKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQ 781

Query: 153 REDAGMYQC 161
           + + G Y C
Sbjct: 782 KTNEGYYLC 790

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  167 bits (423), Expect = 3e-48
 Identities = 66/377 (17%), Positives = 115/377 (30%), Gaps = 63/377 (16%)

Query: 13  IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV--------LVLD 64
           ++  P+ +V+    +   L C +         +W KDG                  LV  
Sbjct: 9   LKDQPA-EVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFL 67

Query: 65  RVQREDAGMYQCHVSADDDSAQ-MSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPK 123
           R Q  D G YQC        A            +   A +++     G   +L C +   
Sbjct: 68  RPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNA 127

Query: 124 RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDE 183
                  W K       N+D                     D +      G L    V +
Sbjct: 128 YPKPLITWKKRLSGADPNADVT-----------------DFDRRITAGPDGNLYFTIVTK 170

Query: 184 SDR--YRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKH-RILNVKKDESV 240
            D      Y C   N      ++ V      +T++        + +   + +  K  +  
Sbjct: 171 EDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVT 230

Query: 241 ILPCSAQGNPLPTIKWYKQDSPVEES--DRIQRI----GSSLSISHVEESDSGVWNCVAN 294
           ++ C    NP+    ++K    V  +  DRI R     G  L        D GV+ C  +
Sbjct: 231 MIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVD 290

Query: 295 NSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH--RILNVKKDE 352
           N  G+ +                S +L +            +A  +E+   +++ VK+ +
Sbjct: 291 NGVGKPQKH--------------SLKLTVV-----------SAPKYEQKPEKVIVVKQGQ 325

Query: 353 SVILPCSAQGNPLPTIK 369
            V +PC   G P P + 
Sbjct: 326 DVTIPCKVTGLPAPNVV 342

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  122 bits (308), Expect = 8e-32
 Identities = 52/328 (15%), Positives = 97/328 (29%), Gaps = 68/328 (20%)

Query: 5   IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV---- 60
            +    ++       +     G   +L C +          W K       N+D      
Sbjct: 95  FRKTYLIASPAKTH-EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDR 153

Query: 61  ---------LVLDRVQREDA---GMYQCHVS-----ADDDSAQMSAQVILGGEL------ 97
                    L    V +ED      Y C         +    +   + +           
Sbjct: 154 RITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEP 213

Query: 98  VEIASSNQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE 154
           V    S  ++   G    ++C     P    +    + K+G  +  N ++ +        
Sbjct: 214 VPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPN----YFKNGKDVNGNPEDRI-------- 261

Query: 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214
                       +++  S   L+       D    Y C   N +      S+   +L++ 
Sbjct: 262 -----------TRHNRTSGKRLLFKTTLPEDE-GVYTCEVDNGVGKPQKHSL---KLTVV 306

Query: 215 ENKRLLSAAKMFEKH--RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI 272
                  +A  +E+   +++ VK+ + V +PC   G P P + W     P+    R    
Sbjct: 307 -------SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL-SGGRATVT 358

Query: 273 GSSLSISHVEESDSGVWNCVANNSEGQD 300
            S L I  V+  D G + C A N  G  
Sbjct: 359 DSGLVIKGVKNGDKGYYGCRATNEHGDK 386

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  163 bits (415), Expect = 4e-47
 Identities = 75/381 (19%), Positives = 137/381 (35%), Gaps = 82/381 (21%)

Query: 12  SIEMSPSGQVVVDV--GHRIELHCRV--SPK-RLSSAKAWLKDGLVLRRNSDEVLVL--- 63
                PS  +        +++L C V  +PK  +     W  +G  +    D    +   
Sbjct: 7   VFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIR----WKLNGTDVDIGMDFRYSVVDG 62

Query: 64  -----DRVQREDAGMYQCHVS-----ADDDSAQMSAQVILGGELVEIASSNQVVVDVGHR 113
                +  + +DAG YQC  +          A++    +   E  +  + + V V  G  
Sbjct: 63  SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYL---ENFKTRTRSTVSVRRGQG 119

Query: 114 IELHCRVSPKRLSSAKA---WLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHM 170
           + L C   P    S +    W+ +     ++                       + ++  
Sbjct: 120 MVLLCGPPP---HSGELSYAWIFNEYPSYQD-----------------------NRRFVS 153

Query: 171 LSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKH- 229
             +G L I +V++SD   +Y C   N +T   +L      +   +        K+  +  
Sbjct: 154 QETGNLYIAKVEKSDV-GNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFP 212

Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQD-SPVEESDRIQRIGSSLSISHVEESDSGV 288
             +  +K  +V L C A GNP+PTI W + D  P+    R  +    L I + ++ D+G 
Sbjct: 213 ETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGS 272

Query: 289 WNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNV 348
           + CVA NS G++                + G+L  +          +     +    ++V
Sbjct: 273 YECVAENSRGKNV---------------AKGQLTFY----------AQPNWVQIINDIHV 307

Query: 349 KKDESVILPCSAQGNPLPTIK 369
             +ESV   C A G P PT +
Sbjct: 308 AMEESVFWECKANGRPKPTYR 328

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  134 bits (338), Expect = 5e-36
 Identities = 69/335 (20%), Positives = 121/335 (36%), Gaps = 80/335 (23%)

Query: 5   IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSDEV- 60
           +Q     + +      V V  G  + L C   P    S +    W+ +     +++    
Sbjct: 96  LQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPP---HSGELSYAWIFNEYPSYQDNRRFV 152

Query: 61  ------LVLDRVQREDAGMYQCHVS---ADDDSAQMSAQVILGGEL--------VEIASS 103
                 L + +V++ D G Y C V+    +         +IL  +         +E+   
Sbjct: 153 SQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFP 212

Query: 104 NQVVVDVGHRIELHCRVS--PK-RLSSAKAWLK-DGLVL-----RRNSDEVLVLDRVQRE 154
             V  + G  ++L C     P   +     W + DG  +     R  S+ +L +   Q+E
Sbjct: 213 ETVPAEKGTTVKLECFALGNPVPTIL----WRRADGKPIARKARRHKSNGILEIPNFQQE 268

Query: 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214
           DAG Y+C  E+ +   ++ G+L  +                                   
Sbjct: 269 DAGSYECVAENSRGKNVAKGQLTFY----------------------------------- 293

Query: 215 ENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS 274
                 +     +    ++V  +ESV   C A G P PT +W K   P+   DRIQ    
Sbjct: 294 ------AQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQG 347

Query: 275 SLSISHVEESDSGVWNCVANNSEG--QDKMQLFIQ 307
           +L+I+ V  SD+G++ CVA N  G      +L + 
Sbjct: 348 TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  159 bits (404), Expect = 1e-45
 Identities = 68/375 (18%), Positives = 120/375 (32%), Gaps = 72/375 (19%)

Query: 13  IEMSPSGQVVV--DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE--------VLV 62
            E  P+  +        ++ L CR      ++ + W  +G  L+   D         +++
Sbjct: 7   FEEQPAHTLFPEGSAEEKVTLTCRARANPPATYR-WKMNGTELKMGPDSRYRLVAGDLVI 65

Query: 63  LDRVQREDAGMYQCHVS-----ADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELH 117
            + V+ +DAG YQC  +          A +    +   +       + V +  G  +   
Sbjct: 66  SNPVKAKDAGSYQCVATNARGTVVSREASLRFGFL---QEFSAEERDPVKITEGWGVMFT 122

Query: 118 CRVSPKRLSSAK-AWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGEL 176
           C   P    +    WL +       +D                       ++   ++G L
Sbjct: 123 CSP-PPHYPALSYRWLLNEFPNFIPAD---------------------GRRFVSQTTGNL 160

Query: 177 IIHQVDESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKRLLSAAKMFEKHRI-LNV 234
            I + + SD   +Y C   + +      +     +LSL        A  +  K       
Sbjct: 161 YIAKTEASDL-GNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYA 219

Query: 235 KKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVAN 294
              + V L C A GNP+P IKW K D     + +       L I +V+  D G + C A 
Sbjct: 220 LTGQMVTLECFAFGNPVPQIKWRKLDGSQ--TSKWLSSEPLLHIQNVDFEDEGTYECEAE 277

Query: 295 NSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESV 354
           N +G+D                  G +IIH          +     +            +
Sbjct: 278 NIKGRDT---------------YQGRIIIH----------AQPDWLDVITDTEADIGSDL 312

Query: 355 ILPCSAQGNPLPTIK 369
              C A G P P ++
Sbjct: 313 RWSCVASGKPRPAVR 327

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  136 bits (345), Expect = 4e-37
 Identities = 52/333 (15%), Positives = 92/333 (27%), Gaps = 76/333 (22%)

Query: 5   IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSDE---- 59
           ++              V +  G  +   C   P    +    WL +       +D     
Sbjct: 95  LRFGFLQEFSAEERDPVKITEGWGVMFTCSP-PPHYPALSYRWLLNEFPNFIPADGRRFV 153

Query: 60  -----VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELV------------EIAS 102
                 L + + +  D G Y C  ++  D    S         +            +   
Sbjct: 154 SQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKF 213

Query: 103 SNQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVL---RRNSDEVLVLDRVQREDA 156
                   G  + L C     P  ++     W K          +S+ +L +  V  ED 
Sbjct: 214 PADTYALTGQMVTLECFAFGNPVPQIK----WRKLDGSQTSKWLSSEPLLHIQNVDFEDE 269

Query: 157 GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTEN 216
           G Y+C  E       +      +Q                       + +          
Sbjct: 270 GTYECEAE-------NIKGRDTYQGR---------------------III---------- 291

Query: 217 KRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSL 276
               +     +            +   C A G P P ++W +   P+   +RI+  G  L
Sbjct: 292 ---HAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGEL 348

Query: 277 SISHVEESDSGVWNCVANNSEGQD--KMQLFIQ 307
             S +   DSG++ CVA N  G      +L +Q
Sbjct: 349 RFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 72.6 bits (178), Expect = 2e-14
 Identities = 28/139 (20%), Positives = 52/139 (37%), Gaps = 27/139 (19%)

Query: 237 DESVILPCSAQGNPLPTIKWYKQDSPVE--ESDRIQRIGSSLSISH-VEESDSGVWNCVA 293
           +E V L C A+ NP  T +W    + ++     R + +   L IS+ V+  D+G + CVA
Sbjct: 22  EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVA 81

Query: 294 NNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDES 353
            N+ G    +                 L    + E +          E+   + + +   
Sbjct: 82  TNARGTVVSR--------------EASLRFGFLQEFSA---------EERDPVKITEGWG 118

Query: 354 VILPCSA-QGNPLPTIKYR 371
           V+  CS     P  + ++ 
Sbjct: 119 VMFTCSPPPHYPALSYRWL 137

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  158 bits (402), Expect = 4e-45
 Identities = 78/386 (20%), Positives = 134/386 (34%), Gaps = 71/386 (18%)

Query: 2   QLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV- 60
                 + SL     PS   V   G  + L+C     R      W KDGL+L    D+  
Sbjct: 13  HHHHGGRRSLHFVSEPS-DAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRK 71

Query: 61  ------------LVLDRVQREDAGMYQCHVSADDDSAQMS--AQVILGGELVEIASSNQV 106
                       ++  R  + D G+YQC  S  D  + +S  A+V++ G L  ++ +  +
Sbjct: 72  QQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESI 131

Query: 107 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDG 166
              +G  + L C V    + +   W K+   L                          D 
Sbjct: 132 TAFMGDTVLLKCEVIGDPMPTIH-WQKNQQDLNPIPG---------------------DS 169

Query: 167 KYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF 226
           +  +L SG L I ++   D    Y+C   N    AS  + N   + +  +  L       
Sbjct: 170 RVVVLPSGALQISRLQPGDS-GVYRCSARNP---ASTRTGNEAEVRILSDPGLHRQLYFL 225

Query: 227 EKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--GSSLSISHVEES 284
           ++   +   + +  +L C   G P P+  W + +  ++   +   +  GS+L IS+V + 
Sbjct: 226 QRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDD 285

Query: 285 DSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH- 343
           DSG + CV                        +S EL +                F  H 
Sbjct: 286 DSGTYTCVVTYKNENIS---------------ASAELTVL-----------VPPWFLNHP 319

Query: 344 RILNVKKDESVILPCSAQGNPLPTIK 369
             L   +   +   C+  G P+PT+ 
Sbjct: 320 SNLYAYESMDIEFECAVSGKPVPTVN 345

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  137 bits (347), Expect = 3e-37
 Identities = 66/327 (20%), Positives = 111/327 (33%), Gaps = 64/327 (19%)

Query: 3   LFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE--- 59
           + +        +      +   +G  + L C V    + +   W K+   L     +   
Sbjct: 116 VMVAGPLRFLSQTES---ITAFMGDTVLLKCEVIGDPMPTIH-WQKNQQDLNPIPGDSRV 171

Query: 60  ------VLVLDRVQREDAGMYQCHVS---ADDDSAQMSAQVI----LGGELVEIASSNQV 106
                  L + R+Q  D+G+Y+C      +     +   +++    L  +L  +   + V
Sbjct: 172 VVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNV 231

Query: 107 VVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHI 163
           +   G    L C VS  P    +    WL+   V++                       +
Sbjct: 232 IAIEGKDAVLECCVSGYPPPSFT----WLRGEEVIQ-----------------------L 264

Query: 164 EDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAA 223
              KY +L    L+I  V + D   +Y C    K    S        L++      L   
Sbjct: 265 RSKKYSLLGGSNLLISNVTDDDS-GTYTCVVTYKNENIS----ASAELTV------LVPP 313

Query: 224 KMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-GSSLSISHVE 282
                   L   +   +   C+  G P+PT+ W K    V  SD  Q + GS+L I  V 
Sbjct: 314 WFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVV 373

Query: 283 ESDSGVWNCVANNSEGQD--KMQLFIQ 307
           +SD G + CVA N  G      QL + 
Sbjct: 374 KSDEGFYQCVAENEAGNAQSSAQLIVP 400

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  110 bits (277), Expect = 2e-27
 Identities = 54/296 (18%), Positives = 97/296 (32%), Gaps = 60/296 (20%)

Query: 84  SAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD 143
           S+           L  ++  +  V   G  + L+C     R      W KDGL+L    D
Sbjct: 9   SSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMD 68

Query: 144 EVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRS----YQCRGVNKLT 199
           +                      +   L +G L+I  +  S  ++     YQC       
Sbjct: 69  D----------------------RKQQLPNGSLLIQNILHSRHHKPDEGLYQC------- 99

Query: 200 GASLLSVNRGRLSLTENKRLLSAAK-MFEKH-RILNVKKDESVILPCSAQGNPLPTIKWY 257
                S+      ++   +++ A    F      +     ++V+L C   G+P+PTI W 
Sbjct: 100 ---EASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQ 156

Query: 258 KQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY 313
           K    +       R+      +L IS ++  DSGV+ C A N                  
Sbjct: 157 KNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTG----------- 205

Query: 314 HMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
              +  E+ I      +++L    +       +   + +  +L C   G P P+  
Sbjct: 206 ---NEAEVRILSDPGLHRQLYFLQRPSN----VIAIEGKDAVLECCVSGYPPPSFT 254

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 74.9 bits (184), Expect = 4e-15
 Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 36/149 (24%)

Query: 234 VKKDESVILPCSAQGN-PLPTIKWYKQDSPVEESDRIQRI---GSSLSISHVEES----- 284
             +  +V+L CSA+ +  +P IKW K    +      ++      SL I ++  S     
Sbjct: 33  TMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKP 92

Query: 285 DSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAK-MFEKH 343
           D G++ C A+  +    +                          +  +++ A    F   
Sbjct: 93  DEGLYQCEASLGDSGSII-------------------------SRTAKVMVAGPLRFLSQ 127

Query: 344 -RILNVKKDESVILPCSAQGNPLPTIKYR 371
              +     ++V+L C   G+P+PTI ++
Sbjct: 128 TESITAFMGDTVLLKCEVIGDPMPTIHWQ 156

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  161 bits (408), Expect = 9e-45
 Identities = 72/381 (18%), Positives = 126/381 (33%), Gaps = 86/381 (22%)

Query: 12  SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSDE--------- 59
                    V   +G  I L C+V      + +    W K+   LR              
Sbjct: 7   YFIEPLE-HVEAAIGEPITLQCKVD----GTPEIRIAWYKEHTKLRSAPAYKMQFKNNVA 61

Query: 60  VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELV--EIASSNQ-VVVDVGHRIEL 116
            LV+++V   D G Y C       +   SA +++    +    A   + V   +G  +  
Sbjct: 62  SLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAF 121

Query: 117 HCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS 173
            CR++   P ++S    W KDG +L+ +++                            + 
Sbjct: 122 ECRINGSEPLQVS----WYKDGELLKDDANLQTSFI---------------------HNV 156

Query: 174 GELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILN 233
             L I Q D+S     Y C   N L  AS       +L+L+E++          K   ++
Sbjct: 157 ATLQILQTDQSHV-GQYNCSASNPLGTASS----SAKLTLSEHE---VPPFFDLKPVSVD 208

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVW 289
           +   ES    C   G     I W K +  +      +       ++L++  V + D+G +
Sbjct: 209 LALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQY 268

Query: 290 NCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEK-HRILNV 348
            C A+N  G+D                 S +L +              +  +K      V
Sbjct: 269 TCYASNVAGKDS---------------CSAQLGVQ----------EPPRFIKKLEPSRIV 303

Query: 349 KKDESVILPCSAQGNPLPTIK 369
           K+DE     C   G+P   + 
Sbjct: 304 KQDEHTRYECKIGGSPEIKVL 324

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  155 bits (393), Expect = 1e-42
 Identities = 58/375 (15%), Positives = 114/375 (30%), Gaps = 80/375 (21%)

Query: 12  SIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNS---------DE 59
             ++ P    +  +G      C V+     +++    W KD   +R              
Sbjct: 199 FFDLKPVSVDLA-LGESGTFKCHVTGTAPIKIT----WAKDNREIRPGGNYKMTLVENTA 253

Query: 60  VLVLDRVQREDAGMYQCHVSADDDSAQMSAQV-ILGGELVEIASSNQVVVDVGHRIELHC 118
            L + +V + DAG Y C+ S        SAQ+ +              +V         C
Sbjct: 254 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYEC 313

Query: 119 RVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELII 178
           ++          W KD   ++ +        + +                   S   L +
Sbjct: 314 KIGGSPEIKVL-WYKDETEIQES-------SKFRMSFVE--------------SVAVLEM 351

Query: 179 HQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDE 238
           + +   D    Y C   N            G  S + + ++       +K   +   K  
Sbjct: 352 YNLSVEDSGD-YTCEAHNAA----------GSASSSTSLKVKEPPVFRKKPHPVETLKGA 400

Query: 239 SVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVAN 294
            V L C  QG P   + W+K    +    + + +     +S+ I +V+ +D G + C A+
Sbjct: 401 DVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKAS 460

Query: 295 NSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESV 354
           N  G D                  G + +           +  +  +K   ++    E V
Sbjct: 461 NDVGSDT---------------CVGSITLK----------APPRFVKKLSDISTVVGEEV 495

Query: 355 ILPCSAQGNPLPTIK 369
            L  + +G    ++ 
Sbjct: 496 QLQATIEGAEPISVA 510

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  151 bits (383), Expect = 3e-41
 Identities = 70/383 (18%), Positives = 126/383 (32%), Gaps = 110/383 (28%)

Query: 21  VVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDE---------VLVLDRVQR 68
           V   +G  +   CR++   P ++S    W KDG +L+ +++           L + +  +
Sbjct: 111 VHETLGFPVAFECRINGSEPLQVS----WYKDGELLKDDANLQTSFIHNVATLQILQTDQ 166

Query: 69  EDAGMYQCHVSADDDSAQMSAQVILGGELV----EIASSNQVVVDVGHRIELHCRVS--P 122
              G Y C  S    +A  SA++ L    V    ++   +  +  +G      C V+   
Sbjct: 167 SHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLA-LGESGTFKCHVTGTA 225

Query: 123 K-RLSSAKAWLKDGLVLRRNS---------DEVLVLDRVQREDAGMYQCHIEDGKYHMLS 172
             +++    W KD   +R               L + +V + DAG Y C+  +       
Sbjct: 226 PIKIT----WAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSC 281

Query: 173 SGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEK-HRI 231
           S +L +                                             +  +K    
Sbjct: 282 SAQLGVQ-----------------------------------------EPPRFIKKLEPS 300

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSG 287
             VK+DE     C   G+P   + WYK ++ ++ES + +       + L + ++   DSG
Sbjct: 301 RIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSG 360

Query: 288 VWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH-RIL 346
            + C A+N+ G                  SS  L +               +F K    +
Sbjct: 361 DYTCEAHNAAGSAS---------------SSTSLKVK-----------EPPVFRKKPHPV 394

Query: 347 NVKKDESVILPCSAQGNPLPTIK 369
              K   V L C  QG P   + 
Sbjct: 395 ETLKGADVHLECELQGTPPFQVS 417

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  135 bits (341), Expect = 2e-35
 Identities = 61/325 (18%), Positives = 106/325 (32%), Gaps = 62/325 (19%)

Query: 5   IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------- 56
           + V+             +V         C++          W KD   ++ +        
Sbjct: 285 LGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVL-WYKDETEIQESSKFRMSFV 343

Query: 57  -SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIE 115
            S  VL +  +  ED+G Y C       SA  S  + +    V     + V    G  + 
Sbjct: 344 ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVH 403

Query: 116 LHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS 172
           L C +   P  ++S    W KD   LR                           KY ++S
Sbjct: 404 LECELQGTPPFQVS----WHKDKRELR------------------------SGKKYKIMS 435

Query: 173 SGE---LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKH 229
                 + I  VD +D    YQC+  N + G+     +   ++L          +  +K 
Sbjct: 436 ENFLTSIHILNVDSADI-GEYQCKASNDV-GSDTCVGS---ITLKA------PPRFVKKL 484

Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPV-EESDRIQRI----GSSLSISHVEES 284
             ++    E V L  + +G    ++ W+K    +  ESD I        ++L  S  E +
Sbjct: 485 SDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPA 544

Query: 285 DSGVWNCVANNSEGQD--KMQLFIQ 307
           ++G + C   N  G       L + 
Sbjct: 545 NAGKYTCQIKNEAGTQECFATLSVL 569

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  152 bits (385), Expect = 1e-42
 Identities = 66/390 (16%), Positives = 112/390 (28%), Gaps = 80/390 (20%)

Query: 5   IQVKSSLSIEMSPSGQVVVDVGHRIELHCRV--SPK-RLSSAKAWLKDGLVLRRNSDE-- 59
            ++    +I    +   +VD    I + C    +P         W ++        D   
Sbjct: 11  NELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFH----WTRNSRFFNIAKDPRV 66

Query: 60  -----------VLVLDRVQREDAGMYQCHVSADDDSA-QMSAQVILGG-ELVEIASSNQV 106
                               E  G YQC       +A     ++ +    L    + + V
Sbjct: 67  SMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPV 126

Query: 107 VVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHI 163
           VV  G  + L C   P           W+   +                           
Sbjct: 127 VVQEGAPLTLQCNPPP---GLPSPVIFWMSSSMEPI-----------------------T 160

Query: 164 EDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAA 223
           +D +     +G+L    V   D    Y C      T             LT         
Sbjct: 161 QDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTP 220

Query: 224 K---MFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD-RIQRIGSSLSIS 279
                        V +   ++L C A G P P I WYK+   +     + +    +L I+
Sbjct: 221 SFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRIT 280

Query: 280 HVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKM 339
           +V E DSG + C+A+N  G  +                +  + +           +A   
Sbjct: 281 NVSEEDSGEYFCLASNKMGSIR---------------HTISVRVK----------AAPYW 315

Query: 340 FEKHRILNVKKDESVILPCSAQGNPLPTIK 369
            ++ + L +   E   L C A GNP PT++
Sbjct: 316 LDEPKNLILAPGEDGRLVCRANGNPKPTVQ 345

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  122 bits (308), Expect = 9e-32
 Identities = 56/341 (16%), Positives = 100/341 (29%), Gaps = 86/341 (25%)

Query: 5   IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSDEV- 60
           +QV  S          VVV  G  + L C   P           W+   +        V 
Sbjct: 110 LQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPP---GLPSPVIFWMSSSMEPITQDKRVS 166

Query: 61  ------LVLDRVQREDA-GMYQCHVS-----ADDDSAQMSAQVILGGELVEIA------- 101
                 L    V  +D    Y C+               + +V+    + E         
Sbjct: 167 QGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQ 226

Query: 102 -SSNQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVL------RRNSDEVLVLDRV 151
            +++  +V  G  + L C  S  P   ++    W K G  L        N ++ L +  V
Sbjct: 227 GTASSQMVLRGMDLLLECIASGVPTPDIA----WYKKGGDLPSDKAKFENFNKALRITNV 282

Query: 152 QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRL 211
             ED+G Y C   +    +  +  + +                                 
Sbjct: 283 SEEDSGEYFCLASNKMGSIRHTISVRVK-------------------------------- 310

Query: 212 SLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD---R 268
                    +A    ++ + L +   E   L C A GNP PT++W     P++ +     
Sbjct: 311 ---------AAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPN 361

Query: 269 IQRIGSSLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQ 307
            +  G ++     + S   V+ C  +N  G       + + 
Sbjct: 362 REVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  148 bits (374), Expect = 6e-42
 Identities = 49/327 (14%), Positives = 106/327 (32%), Gaps = 52/327 (15%)

Query: 5   IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR-------RNS 57
           I   +        S +V       + L C+V+  +  +   W KD   +        ++ 
Sbjct: 2   IDPFTGPHFVEYLSWEVTG--ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDG 59

Query: 58  DEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELH 117
              L++    ++DAG+Y+  +  D    +   +++       +    + +      +++ 
Sbjct: 60  ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQ 119

Query: 118 CRVSPKRLSSAKA---------WLKDGLVLRRNSD---------EVLVLDRVQREDAGMY 159
                 +L S            W  +G  +R +             L ++     D G Y
Sbjct: 120 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKY 179

Query: 160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRL 219
              + DGK     + +L     DE+                         RL        
Sbjct: 180 VMELFDGKTGHQKTVDLSGQAYDEA--------------------YAEFQRLKQAAIAEK 219

Query: 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GS 274
             A  +     ++ +++ +++ L C+  G+P P + W K +  +   D           +
Sbjct: 220 NRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTA 279

Query: 275 SLSISHVEESDSGVWNCVANNSEGQDK 301
             +I+ V  +DSG +  V  N  G + 
Sbjct: 280 YFTINGVSTADSGKYGLVVKNKYGSET 306

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  111 bits (280), Expect = 2e-28
 Identities = 35/276 (12%), Positives = 86/276 (31%), Gaps = 46/276 (16%)

Query: 105 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR-------RNSDEVLVLDRVQREDAG 157
              V     + L C+V+  +  +   W KD   +        ++    L++    ++DAG
Sbjct: 15  SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAG 74

Query: 158 MYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENK 217
           +Y+  ++D +    S  +L+     E                                  
Sbjct: 75  IYEVILKDDRGKDKSRLKLVDEAFKE-------------------------------LMM 103

Query: 218 RLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS--- 274
            +     +      +    +   +            + W    S +  SDR++   +   
Sbjct: 104 EVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQ 163

Query: 275 -SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRL 333
             L I+    +D G +     + +   +  + +              L    + EKN+  
Sbjct: 164 IWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNR-- 221

Query: 334 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
             A  +     ++ +++ +++ L C+  G+P P + 
Sbjct: 222 --ARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVS 255

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 83.8 bits (207), Expect = 2e-18
 Identities = 19/147 (12%), Positives = 45/147 (30%), Gaps = 18/147 (12%)

Query: 226 FEKHRILNVKKDESVILPCSAQG-NPLPTIKWYKQDSPVEESDRIQRI--GSSLSISHVE 282
           F ++    V  + +V+L C          I WYK +  +   ++        +L I+   
Sbjct: 10  FVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFS 69

Query: 283 ESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEK 342
           + D+G++  +  +  G+DK               S  +L+     E    +     +   
Sbjct: 70  KKDAGIYEVILKDDRGKDK---------------SRLKLVDEAFKELMMEVCKKIALSAT 114

Query: 343 HRILNVKKDESVILPCSAQGNPLPTIK 369
              +    +   +            + 
Sbjct: 115 DLKIQSTAEGIQLYSFVTYYVEDLKVN 141

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  154 bits (390), Expect = 1e-41
 Identities = 65/380 (17%), Positives = 121/380 (31%), Gaps = 58/380 (15%)

Query: 4   FIQVKSSLSIEMSPSGQ----VVVDVGHRIELHCRVSPKRLSS-------AKAWLKDGLV 52
           ++Q   S  I           +  +    + + C  S   L+         K ++ DG  
Sbjct: 117 YVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNR 176

Query: 53  LRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGEL----VEIASSNQVVV 108
           +  +S +   +       AGM  C    +D+S Q    +++        V ++ S+ + +
Sbjct: 177 ISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIEL 236

Query: 109 DVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGK 167
            VG ++ L+C    +        W       +        L               + G 
Sbjct: 237 SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDL-------------KTQSGS 283

Query: 168 YHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFE 227
                   L I  V  SD+   Y C   + L        N   + + E   +   +    
Sbjct: 284 EMKKFLSTLTIDGVTRSDQ-GLYTCAASSGLMTKK----NSTFVRVHEKPFVAFGSG--- 335

Query: 228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSG 287
              ++     E V +P    G P P IKWYK   P+E +  I + G  L+I  V E D+G
Sbjct: 336 MESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI-KAGHVLTIMEVSERDTG 394

Query: 288 VWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILN 347
            +  +  N   ++K                S  + +  V    +      +      + +
Sbjct: 395 NYTVILTNPISKEK---------------QSHVVSL-VVYVPPQ----IGEKSLISPVDS 434

Query: 348 VKKDESVILPCSAQGNPLPT 367
            +   +  L C+    P P 
Sbjct: 435 YQYGTTQTLTCTVYAIPPPH 454

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  139 bits (351), Expect = 2e-36
 Identities = 54/391 (13%), Positives = 115/391 (29%), Gaps = 93/391 (23%)

Query: 12  SIEMSPSGQVVVDVGHRIELHCRVSPK---RLSSAKAWLKDGLVLRRNSDE----VLVLD 64
            + +     + +     +++ CR          + ++  +  + +   SD      L + 
Sbjct: 33  RLSIQKD-ILTIKANTTLQITCRGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIP 91

Query: 65  RVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQ-----VVVDVGHRIELHCR 119
           +V   D G Y+C     D ++ +   V         + S+Q     +  +    + + C 
Sbjct: 92  KVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCL 151

Query: 120 VSPKRLSS-------AKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS 172
            S   L+         K ++ DG  +  +S +   +       AGM  C  +       S
Sbjct: 152 GSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQS 211

Query: 173 SGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRIL 232
              +++                                              +      +
Sbjct: 212 IMYIVVVVGYR-------------------------------------IYDVVLSPSHGI 234

Query: 233 NVKKDESVILPCSAQGNPLPTIKWYK--------------QDSPVEESDRIQRIGSSLSI 278
            +   E ++L C+A+      I +                +D   +    +++  S+L+I
Sbjct: 235 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTI 294

Query: 279 SHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAK 338
             V  SD G++ C A++     K   F+                  +V EK      +  
Sbjct: 295 DGVTRSDQGLYTCAASSGLMTKKNSTFV------------------RVHEKPFVAFGS-- 334

Query: 339 MFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
                 ++     E V +P    G P P IK
Sbjct: 335 --GMESLVEATVGERVRIPAKYLGYPPPEIK 363

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  130 bits (327), Expect = 3e-33
 Identities = 60/421 (14%), Positives = 106/421 (25%), Gaps = 93/421 (22%)

Query: 1   MQLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNS 57
             + +  K  ++        V   VG R+ +  +    P   +     W K+G+ L  N 
Sbjct: 320 TFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIK----WYKNGIPLESNH 375

Query: 58  ----DEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGE-----LVEIASSNQVVV 108
                 VL +  V   D G Y   ++      + S  V L          +   S     
Sbjct: 376 TIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSY 435

Query: 109 DVGHRIELHCRVS----PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIE 164
             G    L C V     P  +     W         N     V                 
Sbjct: 436 QYGTTQTLTCTVYAIPPPHHIH----WYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDF 491

Query: 165 DGKYHMLSSGE------------LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLS 212
            G   +  +                +     +     Y+C  VNK+ G     +      
Sbjct: 492 QGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSAL-YKCEAVNKV-GRGERVI---SFH 546

Query: 213 LTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ-- 270
           +T                 +   + ESV L C+A  +    + WYK           +  
Sbjct: 547 VTRGPE-------ITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELP 599

Query: 271 ----------------------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308
                                      + + +    D G + C+A + + + +       
Sbjct: 600 TPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKR------- 652

Query: 309 AHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTI 368
                         +  ++        A  +            ES+ + C+A GNP P I
Sbjct: 653 --------HCVVRQLTVLERV------APTITGNLENQTTSIGESIEVSCTASGNPPPQI 698

Query: 369 K 369
            
Sbjct: 699 M 699

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  126 bits (316), Expect = 8e-32
 Identities = 53/352 (15%), Positives = 94/352 (26%), Gaps = 58/352 (16%)

Query: 2   QLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS------------------------- 36
            L + V   +  +   S       G    L C V                          
Sbjct: 414 SLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQA 473

Query: 37  -------PKRLSSAKAWLKDGLVLRRNSDE----------VLVLDRVQREDAGMYQCHVS 79
                  P     +    + G  +  N ++          V  L       + +Y+C   
Sbjct: 474 VSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAV 533

Query: 80  --ADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLV 137
                    +S  V       EI     +       + L C    +       W K G  
Sbjct: 534 NKVGRGERVISFHVT---RGPEITLQPDMQPTEQESVSLWCTAD-RSTFENLTWYKLGPQ 589

Query: 138 LRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197
                   L     +  D  +++ +             + +      D+   Y C   ++
Sbjct: 590 PLPIHVGELPTPVCKNLDT-LWKLNATMFSNSTNDILIMELKNASLQDQ-GDYVCLAQDR 647

Query: 198 LTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWY 257
            T           +          A  +            ES+ + C+A GNP P I W+
Sbjct: 648 KTKKRH------CVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWF 701

Query: 258 KQDSPVEESDRIQRI--GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
           K +  + E   I       +L+I  V + D G++ C A +  G  K++ F  
Sbjct: 702 KDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 753

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  102 bits (255), Expect = 6e-24
 Identities = 39/304 (12%), Positives = 95/304 (31%), Gaps = 58/304 (19%)

Query: 70  DAGMYQCHVSADDDSAQMSAQVILGGELVEIASS-NQVVVDVGHRIELHCRVSPKRLSSA 128
              ++ C  +        S  +    +L  ++   + + +     +++ CR         
Sbjct: 8   AVALWLCVETRAASVGLPSVSL----DLPRLSIQKDILTIKANTTLQITCRGQRD----- 58

Query: 129 KAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYR 188
                  L     +++     RV+  +         DG +       L I +V  +D   
Sbjct: 59  -------LDWLWPNNQSGSEQRVEVTE-------CSDGLF----CKTLTIPKVIGNDT-G 99

Query: 189 SYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG 248
           +Y+C        + +       +    +  + S +        +   K+++V++PC    
Sbjct: 100 AYKCFYRETDLASVIYV----YVQDYRSPFIASVSD-QHGVVYITENKNKTVVIPCLGSI 154

Query: 249 NPLPTI--KWYKQDSPVEESDRIQRIGSS-LSISHVEESDSGVWNCVANNSEGQDKMQLF 305
           + L       Y +   V + +RI        +I     S +G+  C A  ++   +    
Sbjct: 155 SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQ---- 210

Query: 306 IQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL 365
                      S   +++         +LS +        + +   E ++L C+A+    
Sbjct: 211 -----------SIMYIVVVVGYRIYDVVLSPSH------GIELSVGEKLVLNCTARTELN 253

Query: 366 PTIK 369
             I 
Sbjct: 254 VGID 257

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 76.3 bits (187), Expect = 3e-15
 Identities = 25/187 (13%), Positives = 58/187 (31%), Gaps = 40/187 (21%)

Query: 190 YQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN 249
           + C          L SV+            L   ++  +  IL +K + ++ + C   G 
Sbjct: 12  WLCVETRAA-SVGLPSVS------------LDLPRLSIQKDILTIKANTTLQITCR--GQ 56

Query: 250 PLPTIKWYKQDSPVEESDRIQRIG-----SSLSISHVEESDSGVWNCVANNSEGQDKMQL 304
                 W    S  E+   +          +L+I  V  +D+G + C    ++    + +
Sbjct: 57  RDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYV 116

Query: 305 FIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNP 364
           +                    V +     +++         +   K+++V++PC    + 
Sbjct: 117 Y--------------------VQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISN 156

Query: 365 LPTIKYR 371
           L      
Sbjct: 157 LNVSLCA 163

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  151 bits (382), Expect = 6e-41
 Identities = 63/383 (16%), Positives = 104/383 (27%), Gaps = 93/383 (24%)

Query: 5   IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVL 61
           + V                  G  + L C  +   P + S    W  +G   +   +  L
Sbjct: 197 LNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYS----WFVNGTFQQSTQE--L 250

Query: 62  VLDRVQREDAGMYQCHVSADDDSAQMSA----QVILGGELVEIASSNQVVVDVGHRIELH 117
            +  +   ++G Y C     D     +      V        I S+N   V+    + L 
Sbjct: 251 FIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALT 310

Query: 118 CRVS--PKRLSSAKAWLKDGLVLR-------RNSDEVLVLDRVQREDAGMYQCHIEDGKY 168
           C              W  +   L         N +  L L  V R D G Y+C I++   
Sbjct: 311 CEPEIQNTTYL----WWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNE-- 364

Query: 169 HMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEK 228
                       VD SD                 +L+V  G                   
Sbjct: 365 ----------LSVDHSD---------------PVILNVLYG------------PDDPTIS 387

Query: 229 HRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGV 288
                 +   ++ L C A  NP     W    +  +           L IS++ E +SG+
Sbjct: 388 PSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQH-------TQELFISNITEKNSGL 440

Query: 289 WNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNV 348
           + C ANNS                     +    I    E  K  +S+           V
Sbjct: 441 YTCQANNSASGH---------------SRTTVKTITVSAELPKPSISSNN------SKPV 479

Query: 349 KKDESVILPCSAQGNPLPTIKYR 371
           +  ++V   C  +      + + 
Sbjct: 480 EDKDAVAFTCEPEAQNTTYLWWV 502

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  145 bits (366), Expect = 1e-38
 Identities = 58/377 (15%), Positives = 110/377 (29%), Gaps = 97/377 (25%)

Query: 13  IEMSPSGQVVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLR-------RNSDEVLVL 63
             ++ +    V+    + L C              W  +   L         N +  L L
Sbjct: 291 PFITSNNSNPVEDEDAVALTCEPEIQNTTYL----WWVNNQSLPVSPRLQLSNDNRTLTL 346

Query: 64  DRVQREDAGMYQCHVS---ADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRV 120
             V R D G Y+C +    + D S  +   V+ G +   I+ S       G  + L C  
Sbjct: 347 LSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYY-RPGVNLSLSCHA 405

Query: 121 SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQ 180
           +    +    WL DG + +      L +  +  +++G+Y C                   
Sbjct: 406 ASNPPAQYS-WLIDGNIQQHTQ--ELFISNITEKNSGLYTCQAN---------------- 446

Query: 181 VDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILN----VKK 236
                          N               S T  K +  +A++ +     N    V+ 
Sbjct: 447 ---------------NSA----------SGHSRTTVKTITVSAELPKPSISSNNSKPVED 481

Query: 237 DESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--GSSLSISHVEESDSGVWNCVAN 294
            ++V   C  +     T  W+     +  S R+Q      +L++ +V  +D+  + C   
Sbjct: 482 KDAVAFTCEPEAQN-TTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQ 540

Query: 295 NSEGQDK---MQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKD 351
           NS   ++   + L + Y                                      +    
Sbjct: 541 NSVSANRSDPVTLDVLYG--------------------------PDTPIISPPDSSYLSG 574

Query: 352 ESVILPCSAQGNPLPTI 368
            ++ L C +  NP P  
Sbjct: 575 ANLNLSCHSASNPSPQY 591

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  133 bits (335), Expect = 2e-34
 Identities = 53/301 (17%), Positives = 90/301 (29%), Gaps = 67/301 (22%)

Query: 13  IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAG 72
             +SPS       G  + L C  +    +    WL DG + +      L +  +  +++G
Sbjct: 384 PTISPS-YTYYRPGVNLSLSCHAASNPPAQYS-WLIDGNIQQHTQ--ELFISNITEKNSG 439

Query: 73  MYQCHV--SADDDSAQMSAQVILGGEL--VEIASSNQVVVDVGHRIELHCRV--SPKRLS 126
           +Y C    SA   S      + +  EL    I+S+N   V+    +   C          
Sbjct: 440 LYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNT--- 496

Query: 127 SAKAWLKDGLVLRRNS-------DEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIH 179
               W  +G  L  +        +  L L  V R DA  Y C I++              
Sbjct: 497 -TYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNS------------V 543

Query: 180 QVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDES 239
             + SD                  L V  G                       +     +
Sbjct: 544 SANRSDPVT---------------LDVLYG------------PDTPIISPPDSSYLSGAN 576

Query: 240 VILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQ 299
           + L C +  NP P   W     P + +         L I+ +  +++G + C  +N    
Sbjct: 577 LNLSCHSASNPSPQYSWRINGIPQQHT-------QVLFIAKITPNNNGTYACFVSNLATG 629

Query: 300 D 300
            
Sbjct: 630 R 630

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  132 bits (332), Expect = 5e-34
 Identities = 62/389 (15%), Positives = 117/389 (30%), Gaps = 94/389 (24%)

Query: 11  LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------------- 56
           L+IE +P     V  G  + L     P+ L     W K   V                  
Sbjct: 2   LTIESTP---FNVAEGKEVLLLVHNLPQHLFGYS-WYKGERVDGNRQIIGYVIGTQQATP 57

Query: 57  -----------SDEVLVLDRVQREDAGMYQCHVSADDD-SAQMSAQVILGGEL--VEIAS 102
                       +  L++  + + D G Y  HV   D  + + + Q  +  EL    I+S
Sbjct: 58  GPAYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISS 117

Query: 103 SNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
           +N   V+    +   C    +  +    W  +   L  +    L                
Sbjct: 118 NNSKPVEDKDAVAFTCEPETQDATYL--WWVNNQSLPVSPRLQLSNG------------- 162

Query: 163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSA 222
                     +  L +  V  +D   SY+C   N ++     SV    L++         
Sbjct: 163 ----------NRTLTLFNVTRNDTA-SYKCETQNPVSARRSDSV---ILNVLY-----GP 203

Query: 223 AKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVE 282
                     + +  E++ L C A  NP     W+   +  + +         L I ++ 
Sbjct: 204 DAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST-------QELFIPNIT 256

Query: 283 ESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEK 342
            ++SG + C A+NS+                    +    I    E  K  +++      
Sbjct: 257 VNNSGSYTCQAHNSDTGLN---------------RTTVTTITVYAEPPKPFITSNNSNP- 300

Query: 343 HRILNVKKDESVILPCSAQGNPLPTIKYR 371
                V+ +++V L C  +      + + 
Sbjct: 301 -----VEDEDAVALTCEPEIQNTTYLWWV 324

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 9/92 (9%)

Query: 5   IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSDEVL 61
           + V       +          G  + L C  +    S+      W  +G+  +     VL
Sbjct: 553 LDVLYGPDTPIISPPDSSYLSGANLNLSCHSA----SNPSPQYSWRINGIPQQHTQ--VL 606

Query: 62  VLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93
            + ++   + G Y C VS        S    +
Sbjct: 607 FIAKITPNNNGTYACFVSNLATGRNNSIVKSI 638

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  139 bits (353), Expect = 5e-39
 Identities = 61/313 (19%), Positives = 114/313 (36%), Gaps = 60/313 (19%)

Query: 9   SSLSIEMSPSGQVVVDVGHRIELHCRVS--PKRLSSAKAWLKDG---------LVLRRNS 57
           + L + +S S +V + VG      C     P+ +     +   G         +V +   
Sbjct: 3   ALLQVTISLS-KVELSVGESKFFTCTAIGEPESIDW---YNPQGEKIISTQRVVVQKEGV 58

Query: 58  DEVLVLDRVQREDAGMYQCHVSADDDSAQM-SAQVILGGELVEIASSNQVVVDVGHRIEL 116
              L +     EDAG+Y+C  +      Q  +  + +  +L      +      G   E+
Sbjct: 59  RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEV 118

Query: 117 HCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS 173
            CRVS  P   +S    WL     +   SD                       ++ ML++
Sbjct: 119 VCRVSSSPAPAVS----WLYHNEEVTTISD----------------------NRFAMLAN 152

Query: 174 GELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF---EKHR 230
             L I  +++SD    Y+C G  +  G                  +++        +K  
Sbjct: 153 NNLQILNINKSDEGI-YRCEGRVEARGEIDFRDII---------VIVNVPPAISMPQKSF 202

Query: 231 ILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--GSSLSISHVEESDSGV 288
               ++ E +   C A G+P P I W++    +EE+++       + L++ ++  SD G 
Sbjct: 203 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGP 262

Query: 289 WNCVANNSEGQDK 301
           + C A N  G+D+
Sbjct: 263 YVCRATNKAGEDE 275

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  107 bits (268), Expect = 6e-27
 Identities = 44/279 (15%), Positives = 81/279 (29%), Gaps = 80/279 (28%)

Query: 106 VVVDVGHRIELHCRVS--PKRLSSAKAWLKDG---------LVLRRNSDEVLVLDRVQRE 154
           V + VG      C     P+ +     +   G         +V +      L +     E
Sbjct: 14  VELSVGESKFFTCTAIGEPESIDW---YNPQGEKIISTQRVVVQKEGVRSRLTIYNANIE 70

Query: 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214
           DAG+Y+C   D      + G+       +                    L +        
Sbjct: 71  DAGIYRCQATD------AKGQ------TQEATVV---------------LEIY------- 96

Query: 215 ENKRLLSAAKMFEKH-RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEE--SDRIQR 271
                      F +       K+ E   + C    +P P + W   +  V     +R   
Sbjct: 97  -------QKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM 149

Query: 272 IGS-SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKN 330
           + + +L I ++ +SD G++ C                 A G+  +     ++I  V    
Sbjct: 150 LANNNLQILNINKSDEGIYRCEGRVE------------ARGE--IDFRDIIVIVNVPPAI 195

Query: 331 KRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
                     +K      ++ E +   C A G+P P I 
Sbjct: 196 SMP-------QKSFNATAERGEEMTFSCRASGSPEPAIS 227

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  137 bits (346), Expect = 4e-38
 Identities = 55/318 (17%), Positives = 108/318 (33%), Gaps = 63/318 (19%)

Query: 12  SIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE--------- 59
             ++ P   V + +G      C V+     +++    W KD   +R   +          
Sbjct: 7   FFDLKPV-SVDLALGESGTFKCHVTGTAPIKIT----WAKDNREIRPGGNYKMTLVENTA 61

Query: 60  VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIAS-SNQVVVDVGHRIELHC 118
            L + +V + DAG Y C+ S        SAQ+ +      I       +V         C
Sbjct: 62  TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYEC 121

Query: 119 RVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE 175
           ++   P+ ++     W KD   ++ +S                ++    +          
Sbjct: 122 KIGGSPEIKVL----WYKDETEIQESSK---------------FRMSFVES------VAV 156

Query: 176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVK 235
           L ++ +   D    Y C   N   G++  S +     L     +       +K   +   
Sbjct: 157 LEMYNLSVEDSGD-YTCEAHNAA-GSASSSTS-----LK----VKEPPVFRKKPHPVETL 205

Query: 236 KDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNC 291
           K   V L C  QG P   + W+K    +    + + +     +S+ I +V+ +D G + C
Sbjct: 206 KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQC 265

Query: 292 VANNSEGQD--KMQLFIQ 307
            A+N  G       + ++
Sbjct: 266 KASNDVGSYTCVGSITLK 283

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  116 bits (293), Expect = 2e-30
 Identities = 51/281 (18%), Positives = 89/281 (31%), Gaps = 87/281 (30%)

Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE---------VLVLDRVQR 153
           V + +G      C V+     +++    W KD   +R   +           L + +V +
Sbjct: 15  VDLALGESGTFKCHVTGTAPIKIT----WAKDNREIRPGGNYKMTLVENTATLTVLKVTK 70

Query: 154 EDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSL 213
            DAG Y C+  +       +G+             S   +          L V       
Sbjct: 71  GDAGQYTCYASN------VAGK------------DSCSAQ----------LGVQ------ 96

Query: 214 TENKRLLSAAKMFEKHRIL-NVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI 272
                     +  +K      VK+DE     C   G+P   + WYK ++ ++ES + +  
Sbjct: 97  -------EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMS 149

Query: 273 ----GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDE 328
                + L + ++   DSG + C A+N+ G                  SS  L +     
Sbjct: 150 FVESVAVLEMYNLSVEDSGDYTCEAHNAAGSAS---------------SSTSLKVK---- 190

Query: 329 KNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
                       +K   +   K   V L C  QG P   + 
Sbjct: 191 ------EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVS 225

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 83.6 bits (207), Expect = 2e-18
 Identities = 36/187 (19%), Positives = 59/187 (31%), Gaps = 42/187 (22%)

Query: 4   FIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE- 59
            + V+             +V         C++   P+ ++     W KD   ++ +S   
Sbjct: 92  QLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVL----WYKDETEIQESSKFR 147

Query: 60  --------VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIA-----SSNQV 106
                   VL +  +  ED+G Y C       SA  S  +      V+         + V
Sbjct: 148 MSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK-----VKEPPVFRKKPHPV 202

Query: 107 VVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQRE 154
               G  + L C +   P  ++S    W KD   LR               + +  V   
Sbjct: 203 ETLKGADVHLECELQGTPPFQVS----WHKDKRELRSGKKYKIMSENFLTSIHILNVDSA 258

Query: 155 DAGMYQC 161
           D G YQC
Sbjct: 259 DIGEYQC 265

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  135 bits (342), Expect = 2e-37
 Identities = 60/315 (19%), Positives = 111/315 (35%), Gaps = 62/315 (19%)

Query: 11  LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE----------- 59
           L +++ PS Q  + VG      C+V+        +W          + +           
Sbjct: 3   LQVDIVPS-QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61

Query: 60  -VLVLDRVQREDAGMYQCHVSADDDSAQM-SAQVILGGELVEIASSNQVVVDVGHRIELH 117
             L +     +DAG+Y+C V+A+D +    +  V +  +L+   +        G    + 
Sbjct: 62  STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIV 121

Query: 118 CRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG 174
           C V    P  +     W   G  +    D                       ++ +LS+ 
Sbjct: 122 CDVVSSLPPTII----WKHKGRDVILKKD----------------------VRFIVLSNN 155

Query: 175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRIL-- 232
            L I  + ++D   +Y+C G     G     +N   + +  N          +  + +  
Sbjct: 156 YLQIRGIKKTDE-GTYRCEGRILARGE----INFKDIQVIVN-----VPPTVQARQSIVN 205

Query: 233 -NVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI------GSSLSISHVEESD 285
                 +SV L C A G P PT+ W K   P+E  +            S L+I +V+++D
Sbjct: 206 ATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKND 265

Query: 286 SGVWNCVANNSEGQD 300
              + C+A N  G+ 
Sbjct: 266 EAEYVCIAENKAGEQ 280

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  103 bits (258), Expect = 2e-25
 Identities = 46/281 (16%), Positives = 92/281 (32%), Gaps = 65/281 (23%)

Query: 98  VEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRNSDEVLVLDRVQREDA 156
           V+I  S   +  VG      C+V+        +W   +G  L  N   + V+        
Sbjct: 5   VDIVPSQGEIS-VGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVV-------- 55

Query: 157 GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTEN 216
                      ++   S  L I+  +  D    Y+C    +    S        +++   
Sbjct: 56  -----------WNDDDSSTLTIYNANIDDAGI-YKCVVTAEDGTQS-----EATVNVKIF 98

Query: 217 KRLLSAAKMFEKH-RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--- 272
           ++L     MF+        K+ E  ++ C    +  PTI W  +   V     ++ I   
Sbjct: 99  QKL-----MFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS 153

Query: 273 GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKR 332
            + L I  ++++D G + C        +                         ++ K+ +
Sbjct: 154 NNYLQIRGIKKTDEGTYRCEGRILARGE-------------------------INFKDIQ 188

Query: 333 L-LSAAKMFEKHRIL---NVKKDESVILPCSAQGNPLPTIK 369
           + ++     +  + +        +SV L C A G P PT+ 
Sbjct: 189 VIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMS 229

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 17/104 (16%), Positives = 31/104 (29%), Gaps = 17/104 (16%)

Query: 2   QLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRV--SPKRLSSAKAWLKDGLVLRRNSDE 59
           Q+ + V  ++    S        +G  + L C     P+      +W KDG  +    ++
Sbjct: 188 QVIVNVPPTVQARQSIVNATAN-LGQSVTLVCDADGFPE---PTMSWTKDGEPIENEEED 243

Query: 60  -----------VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
                       L +  V + D   Y C           S  + 
Sbjct: 244 DEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 287

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  140 bits (353), Expect = 2e-37
 Identities = 48/374 (12%), Positives = 106/374 (28%), Gaps = 73/374 (19%)

Query: 6   QVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE-VLVLD 64
              S  SI    S  ++V VG  I L C      +     W  + L     + +   + +
Sbjct: 32  GEPSPPSIHPGKS-DLIVRVGDEIRLLCTDPG-FVK----WTFEILDETNENKQNEWITE 85

Query: 65  RVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKR 124
           + +  + G Y C           S  V +            +     +   + C ++   
Sbjct: 86  KAEATNTGKYTCTNK---HGLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPE 142

Query: 125 LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184
           +++            +      +                 D ++       ++I  V  +
Sbjct: 143 VTN---------YSLKGCQGKPLPK---------------DLRFIPDPKAGIMIKSVKRA 178

Query: 185 DRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPC 244
                  C    +       SV   +  L       +   +        +++ E   + C
Sbjct: 179 YHRLCLHCSVDQEGK-----SVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTC 233

Query: 245 SAQGNPLPT-IKWYKQDSPVEESDRIQ---------RIGSSLSISHVEESDSGVWNCVAN 294
           + +         W +++S  +  ++              ++L+IS    +DSGV+ C AN
Sbjct: 234 TIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYAN 293

Query: 295 NSEGQDKMQLFIQ-YAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDES 353
           N+ G   +   ++    G  ++                           +  + V   E+
Sbjct: 294 NTFGSANVTTTLEVVDKGFINIFP-----------------------MINTTVFVNDGEN 330

Query: 354 VILPCSAQGNPLPT 367
           V L    +  P P 
Sbjct: 331 VDLIVEYEAFPKPE 344

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  132 bits (332), Expect = 2e-34
 Identities = 52/394 (13%), Positives = 113/394 (28%), Gaps = 90/394 (22%)

Query: 3   LFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN------ 56
           +F++  + L +       +     +   + C ++   +++       G  L ++      
Sbjct: 109 VFVRDPAKLFLVDRS---LYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPD 165

Query: 57  SDEVLVLDRVQR-EDAGMYQCHVSADDDSAQMSAQVILGGELVE------IASSNQVVVD 109
               +++  V+R        C V  +  S   S + IL              S    ++ 
Sbjct: 166 PKAGIMIKSVKRAYHRLCLHCSVDQEGKSVL-SEKFILKVRPAFKAVPVVSVSKASYLLR 224

Query: 110 VGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYH 169
            G    + C +     S    W ++    +                          G ++
Sbjct: 225 EGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNS----------------WHHGDFN 268

Query: 170 MLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS---LLSVN-RGRLSLTENKRLLSAAKM 225
                 L I     +D    + C   N    A+    L V  +G +++            
Sbjct: 269 YERQATLTISSARVNDS-GVFMCYANNTFGSANVTTTLEVVDKGFINIFP---------- 317

Query: 226 FEKHRILNVKKDESVILPCSAQGNPLPT-IKWYKQDSPVEESDRIQ---------RIGSS 275
              +  + V   E+V L    +  P P   +W   +    +              R  S 
Sbjct: 318 -MINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSE 376

Query: 276 LSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLS 335
           L ++ ++ ++ G +  + +NS+                    +  + ++           
Sbjct: 377 LHLTRLKGTEGGTYTFLVSNSDVNAA---------------IAFNVYVN----------- 410

Query: 336 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
                 K  IL   +  + +L C A G P PTI 
Sbjct: 411 -----TKPEILTYDRLVNGMLQCVAAGFPEPTID 439

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  126 bits (318), Expect = 1e-32
 Identities = 44/337 (13%), Positives = 91/337 (27%), Gaps = 82/337 (24%)

Query: 15  MSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS--------------DEV 60
                  ++  G    + C +     S    W ++    +                    
Sbjct: 215 SVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQAT 274

Query: 61  LVLDRVQREDAGMYQCHVS--ADDDSAQMSAQVILGGELVEIASSNQVV-VDVGHRIELH 117
           L +   +  D+G++ C+ +      +   + +V+  G +      N  V V+ G  ++L 
Sbjct: 275 LTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLI 334

Query: 118 CRVS----PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS 173
                   P+       W+          ++                    + + ++   
Sbjct: 335 VEYEAFPKPEHQQ----WIYMNRTFTDKWEDYP----------------KSENESNIRYV 374

Query: 174 GELIIHQVDESDRYRSYQCRGVNKLTGASL---LSVNRGRLSLTENKRLLSAAKMFEKHR 230
            EL + ++  ++    Y     N    A++   + VN                    K  
Sbjct: 375 SELHLTRLKGTEGGT-YTFLVSNSDVNAAIAFNVYVN-------------------TKPE 414

Query: 231 ILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDR----------------IQRIGS 274
           IL   +  + +L C A G P PTI WY      +                      ++  
Sbjct: 415 ILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVV 474

Query: 275 SLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQYA 309
             SI       +G   C A N  G+         +  
Sbjct: 475 QSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGN 511

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 91.3 bits (226), Expect = 2e-20
 Identities = 37/307 (12%), Positives = 80/307 (26%), Gaps = 77/307 (25%)

Query: 69  EDAGMYQCHV----SADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKR 124
             A  + C +         S+Q S               + ++V VG  I L C      
Sbjct: 5   RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG-F 63

Query: 125 LSSAKAWLKDGLVLRRNSDE-VLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDE 183
           +     W  + L     + +   + ++ +  + G Y C  +                   
Sbjct: 64  VK----WTFEILDETNENKQNEWITEKAEATNTGKYTCTNK------------------- 100

Query: 184 SDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILP 243
                       + L+ +  + V                AK+F   R L  K+D   ++ 
Sbjct: 101 ------------HGLSNSIYVFVR-------------DPAKLFLVDRSLYGKEDNDTLVR 135

Query: 244 CSAQGNPLPTIKWYKQDS-PVEESDRI-QRIGSSLSISHVEES-DSGVWNCVANNSEGQD 300
           C      +           P+ +  R      + + I  V+ +      +C  +      
Sbjct: 136 CPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSV 195

Query: 301 KMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSA 360
                            S + I+  V    K +   +          +++ E   + C+ 
Sbjct: 196 L----------------SEKFILK-VRPAFKAVPVVSVSKAS---YLLREGEEFTVTCTI 235

Query: 361 QGNPLPT 367
           +      
Sbjct: 236 KDVSSSV 242

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 67.0 bits (163), Expect = 2e-12
 Identities = 25/182 (13%), Positives = 53/182 (29%), Gaps = 42/182 (23%)

Query: 190 YQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN 249
           + C          LL V  G    + +    S   +      L V+  + + L C+  G 
Sbjct: 10  FLC------VLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG- 62

Query: 250 PLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA 309
               +KW  +       ++     +       E +++G + C   +      + +F++  
Sbjct: 63  ---FVKWTFEILDETNENK----QNEWITEKAEATNTGKYTCTNKHGLSN-SIYVFVR-- 112

Query: 310 HGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
                                      AK+F   R L  K+D   ++ C      +    
Sbjct: 113 -------------------------DPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYS 147

Query: 370 YR 371
            +
Sbjct: 148 LK 149

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  139 bits (351), Expect = 4e-37
 Identities = 41/376 (10%), Positives = 98/376 (26%), Gaps = 75/376 (19%)

Query: 2   QLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRV--SPKRLSSAKAWLKDG---LVLRRN 56
              + ++++L   +       +   ++  L C     P+ +     W+         +  
Sbjct: 132 LFTVSIRNTLLYTLRRPYFRKM--ENQDALVCISESVPEPIVE---WVLCDSQGESCKEE 186

Query: 57  SDEVLVLDR--VQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRI 114
           S  V+  +   +        +C    +          I   +  +     Q+ + VG  +
Sbjct: 187 SPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLP-QLFLKVGEPL 245

Query: 115 ELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG 174
            + C+           W  +   L   +                ++         M+   
Sbjct: 246 WIRCKAVHVNHGFGLTWELENKALEEGNY---------------FEMSTYSTNRTMIRIL 290

Query: 175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVN-RGRLSLTENKRLLSAAKMFEKHRILN 233
              +  V  +D    Y C      + ++L+++  +G ++ T +                 
Sbjct: 291 FAFVSSVARNDT-GYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYE------------ 337

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVA 293
           + + E        +  P     W           +    G S+S     +   G +   A
Sbjct: 338 IDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHA 397

Query: 294 NNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDES 353
            N + Q                     L I                  K ++  + +  +
Sbjct: 398 ENDDAQFT---------------KMFTLNIR----------------RKPQV--LAEASA 424

Query: 354 VILPCSAQGNPLPTIK 369
               C + G PLP+  
Sbjct: 425 SQASCFSDGYPLPSWT 440

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  121 bits (305), Expect = 1e-30
 Identities = 49/390 (12%), Positives = 104/390 (26%), Gaps = 91/390 (23%)

Query: 1   MQLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR------ 54
           +   ++ +SS ++    +  V VDV   I L   V      S   W+     L       
Sbjct: 40  LGCALRPQSSGTV--YEAAAVEVDVSASITLQVLVDAPGNISCL-WVFKHSSLNCQPHFD 96

Query: 55  --RNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGH 112
                   +V+ ++    AG Y   + ++  +  +   V +   L+           + +
Sbjct: 97  LQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRK-MEN 155

Query: 113 RIELHCRV--SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHM 170
           +  L C     P+ +     W+          +E                         +
Sbjct: 156 QDALVCISESVPEPIVE---WVLCDSQGESCKEE----------------------SPAV 190

Query: 171 LSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHR 230
           +   E ++H++  +D     +C   N+                T    +           
Sbjct: 191 VKKEEKVLHELFGTD----IRCCARNE-----------LGRECTRLFTIDLNQTPQTTLP 235

Query: 231 ILNVKKDESVILPCSAQG-NPLPTIKWYKQDSPVEESDRIQRI----------GSSLSIS 279
            L +K  E + + C A   N    + W  ++  +EE +  +                 +S
Sbjct: 236 QLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVS 295

Query: 280 HVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKM 339
            V  +D+G + C ++                       S  + I    EK          
Sbjct: 296 SVARNDTGYYTCSSSKHPS------------------QSALVTIV---EK-----GFINA 329

Query: 340 FEKHRILNVKKDESVILPCSAQGNPLPTIK 369
                   + + E        +  P     
Sbjct: 330 TNSSEDYEIDQYEEFCFSVRFKAYPQIRCT 359

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  113 bits (283), Expect = 8e-28
 Identities = 41/341 (12%), Positives = 75/341 (21%), Gaps = 95/341 (27%)

Query: 5   IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE----- 59
           I +  +    +    Q+ + VG  + + C+           W  +   L   +       
Sbjct: 224 IDLNQTPQTTLP---QLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTY 280

Query: 60  ----------VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVD 109
                        +  V R D G Y C  S    S      ++  G +    SS    +D
Sbjct: 281 STNRTMIRILFAFVSSVARNDTGYYTCSSS-KHPSQSALVTIVEKGFINATNSSEDYEID 339

Query: 110 VGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS-----DEVLVLDRVQREDAGMYQCHIE 164
                    R           W                   +      +   G       
Sbjct: 340 QYEEFCFSVRFKAYPQIRCT-WTFSRKSFPCEQKGLDNGYSISKFCNHKHQPG------- 391

Query: 165 DGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASL---LSVNRGRLSLTENKRLLS 221
                                    Y     N     +    L++               
Sbjct: 392 ------------------------EYIFHAENDDAQFTKMFTLNIR-------------- 413

Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSP---------------VEES 266
                 K ++  + +  +    C + G PLP+  W K                       
Sbjct: 414 -----RKPQV--LAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANR 466

Query: 267 DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
               +  SS +++  E     +  C A NS G     + + 
Sbjct: 467 KVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLN 507

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 91.7 bits (227), Expect = 2e-20
 Identities = 41/314 (13%), Positives = 74/314 (23%), Gaps = 84/314 (26%)

Query: 66  VQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQ-VVVDVGHRIELHCRVSPKR 124
                +  Y     + +D         L  +          V VDV   I L   V    
Sbjct: 22  SSVGKSSSYPMVSESPEDLG-----CALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPG 76

Query: 125 LSSAKAWLKDGLVLR--------RNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGEL 176
             S   W+     L               +V+ ++    AG Y   I+            
Sbjct: 77  NISCL-WVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQ------------ 123

Query: 177 IIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKK 236
                              ++ T  ++        +++          ++   R    K 
Sbjct: 124 -------------------SEATNYTI------LFTVSIR-----NTLLYTLRRPYFRKM 153

Query: 237 DESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNS 296
           +    L C ++  P P ++W   DS  E                + E       C A N 
Sbjct: 154 ENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNE 213

Query: 297 EGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVIL 356
            G++  +LF    +                                     +K  E + +
Sbjct: 214 LGRECTRLFTIDLNQTPQTTLPQLF--------------------------LKVGEPLWI 247

Query: 357 PCSAQG-NPLPTIK 369
            C A   N    + 
Sbjct: 248 RCKAVHVNHGFGLT 261

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 90.9 bits (225), Expect = 3e-20
 Identities = 25/226 (11%), Positives = 56/226 (24%), Gaps = 58/226 (25%)

Query: 151 VQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRS--YQCRGVNKLTGASLLSVNR 208
              +D  + +C              LI H+ ++S   +S  Y     +       L    
Sbjct: 2   TGNQDLPVIKC-------------VLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQ- 47

Query: 209 GRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDR 268
                        ++    +   + V    S+ L          +  W  + S +     
Sbjct: 48  -------------SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPH 94

Query: 269 IQRIG---SSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQ 325
                    S+ I  + E+ +G +     +                         + I  
Sbjct: 95  FDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYT---------------ILFTVSIR- 138

Query: 326 VDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371
                        ++   R    K +    L C ++  P P +++ 
Sbjct: 139 ----------NTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWV 174

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 67.4 bits (164), Expect = 2e-12
 Identities = 17/183 (9%), Positives = 40/183 (21%), Gaps = 34/183 (18%)

Query: 4   FIQVKSSLSIEMSPSGQVV-VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS----- 57
            + +     I  + S +   +D         R           W                
Sbjct: 318 LVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCT-WTFSRKSFPCEQKGLDN 376

Query: 58  DEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELH 117
              +      +   G Y  H   DD        +      +        V+      +  
Sbjct: 377 GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN-----IRRKP---QVLAEASASQAS 428

Query: 118 CRVS------------PKRLSSAKAWLKDGLVLRRNSDEV-------LVLDRVQREDAGM 158
           C                 +  +    + +G+  R+ + +V         L+  +     +
Sbjct: 429 CFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFL 488

Query: 159 YQC 161
            +C
Sbjct: 489 VKC 491

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  131 bits (332), Expect = 5e-36
 Identities = 48/302 (15%), Positives = 95/302 (31%), Gaps = 47/302 (15%)

Query: 12  SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE----VLVLDRVQ 67
            IE S   ++VV+ G  + L C  +      +  W            E     L      
Sbjct: 6   VIEPSGP-ELVVEPGETVTLRCVSN-----GSVEWDGPISPYWTLDPESPGSTLTTRNAT 59

Query: 68  REDAGMYQCHVSADDDSAQMSAQV-ILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLS 126
            ++ G Y+C    D  +   +  + +          + +V V  G    L C ++   L 
Sbjct: 60  FKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALK 119

Query: 127 SAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDR 186
            + + +++G                           +    Y        II +    D 
Sbjct: 120 DSVSLMREGGRQ-----------------------VLRKTVYFFSPWRGFIIRKAKVLDS 156

Query: 187 YRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSA 246
             +Y C+ +               + L  N+      ++  +   L   + E+  + CSA
Sbjct: 157 -NTYVCKTMVNGRE-----STSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSA 210

Query: 247 QGNPLPTIKWYKQDSPVEE-------SDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQ 299
               +      K+     E        D   +   +LS++ V+  D+G+++CVA+N  G 
Sbjct: 211 TNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGT 270

Query: 300 DK 301
             
Sbjct: 271 RT 272

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 93.9 bits (233), Expect = 5e-22
 Identities = 29/275 (10%), Positives = 67/275 (24%), Gaps = 74/275 (26%)

Query: 102 SSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE----VLVLDRVQREDAG 157
           S  ++VV+ G  + L C  +      +  W            E     L       ++ G
Sbjct: 10  SGPELVVEPGETVTLRCVSN-----GSVEWDGPISPYWTLDPESPGSTLTTRNATFKNTG 64

Query: 158 MYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENK 217
            Y+C   +      ++  L +                                       
Sbjct: 65  TYRCTELEDPMAGSTTIHLYVKD------------------------------------- 87

Query: 218 RLLSAAKMF-EKHRILNVKKDESVILPCSAQG-NPLPTIKWYKQDSPVEESDRIQRI--G 273
                A  +    + + V + +  +LPC         ++   ++         +      
Sbjct: 88  ----PAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPW 143

Query: 274 SSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRL 333
               I   +  DS  + C    +  +                  S  + +      N+  
Sbjct: 144 RGFIIRKAKVLDSNTYVCKTMVNGREST----------------STGIWLKV----NRVH 183

Query: 334 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTI 368
               ++  +   L   + E+  + CSA    +   
Sbjct: 184 PEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFN 218

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 81.9 bits (202), Expect = 7e-18
 Identities = 27/200 (13%), Positives = 61/200 (30%), Gaps = 25/200 (12%)

Query: 4   FIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL-------RRN 56
            + VK         + +V V  G    L C ++   L  + + +++G            +
Sbjct: 82  HLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFS 141

Query: 57  SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVE------IASSNQVVVDV 110
                ++ + +  D+  Y C     +     S  + L    V           +++V   
Sbjct: 142 PWRGFIIRKAKVLDSNTYVCKTM-VNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIR 200

Query: 111 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE-----------VLVLDRVQREDAGMY 159
           G   ++ C  +   +       +    L    +             L L+ V  +DAG+Y
Sbjct: 201 GEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIY 260

Query: 160 QCHIEDGKYHMLSSGELIIH 179
            C   +      ++    + 
Sbjct: 261 SCVASNDVGTRTATMNFQVV 280

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 68.8 bits (168), Expect = 2e-13
 Identities = 21/138 (15%), Positives = 45/138 (32%), Gaps = 32/138 (23%)

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVA 293
           V+  E+V L C + G    +++W    SP    D  +  GS+L+  +    ++G + C  
Sbjct: 16  VEPGETVTLRCVSNG----SVEWDGPISPYWTLD-PESPGSTLTTRNATFKNTGTYRCTE 70

Query: 294 NNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMF-EKHRILNVKKDE 352
                                  ++  L +             A  +    + + V + +
Sbjct: 71  LEDPMAGS---------------TTIHLYVKD----------PAHSWNLLAQEVTVVEGQ 105

Query: 353 SVILPCSAQG-NPLPTIK 369
             +LPC         ++ 
Sbjct: 106 EAVLPCLITDPALKDSVS 123

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  126 bits (317), Expect = 7e-35
 Identities = 48/208 (23%), Positives = 85/208 (40%), Gaps = 29/208 (13%)

Query: 105 QVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 161
           +V V  G  + L C      P  LS    WL +   +    D+                 
Sbjct: 17  EVRVKEGKGMVLLCDPPYHFPDDLS--YRWLLNEFPVFITMDK----------------- 57

Query: 162 HIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLS 221
                ++   ++G L I  V+ SD+  +Y C   +     S+ S     + + E      
Sbjct: 58  ----RRFVSQTNGNLYIANVEASDK-GNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPY 112

Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHV 281
            A +  + + +     ++V L C A GNP+P I+W K   P+  +  I   G+ L I ++
Sbjct: 113 PADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNI 172

Query: 282 EESDSGVWNCVANNSEGQDK--MQLFIQ 307
           +  D G++ C A N  G+DK   ++++Q
Sbjct: 173 QLEDEGIYECEAENIRGKDKHQARIYVQ 200

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 88.0 bits (218), Expect = 9e-21
 Identities = 38/190 (20%), Positives = 58/190 (30%), Gaps = 36/190 (18%)

Query: 20  QVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDE---------VLVLDRVQ 67
           +V V  G  + L C      P  LS    WL +   +    D+          L +  V+
Sbjct: 17  EVRVKEGKGMVLLCDPPYHFPDDLS--YRWLLNEFPVFITMDKRRFVSQTNGNLYIANVE 74

Query: 68  REDAGMYQCHVS-----ADDDSAQMSAQVILGGELVEIA-----SSNQVVVDVGHRIELH 117
             D G Y C VS         S  +    I                  V   +G  + L 
Sbjct: 75  ASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLE 134

Query: 118 CRVS--PK-RLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHIEDGKYH 169
           C     P   +     W K    +        S  VL +  +Q ED G+Y+C  E+ +  
Sbjct: 135 CFALGNPVPDIR----WRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGK 190

Query: 170 MLSSGELIIH 179
                 + + 
Sbjct: 191 DKHQARIYVQ 200

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 84.9 bits (210), Expect = 1e-19
 Identities = 27/144 (18%), Positives = 55/144 (38%), Gaps = 21/144 (14%)

Query: 232 LNVKKDESVILPCSAQGNPLP--TIKWYKQDSPVEESDRIQRI----GSSLSISHVEESD 285
           + VK+ + ++L C    +     + +W   + PV  +   +R       +L I++VE SD
Sbjct: 18  VRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASD 77

Query: 286 SGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRI 345
            G ++C  ++                        + I      +       A +  + + 
Sbjct: 78  KGNYSCFVSSPSITKS---------------VFSKFIPLIPIPERTTKPYPADIVVQFKD 122

Query: 346 LNVKKDESVILPCSAQGNPLPTIK 369
           +     ++V L C A GNP+P I+
Sbjct: 123 VYALMGQNVTLECFALGNPVPDIR 146

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 13/89 (14%)

Query: 12  SIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRN-----SDEVLVL 63
            I +       + +G  + L C     P   +     W K    +        S  VL +
Sbjct: 115 DIVVQFKDVYAL-MGQNVTLECFALGNPVPDIR----WRKVLEPMPSTAEISTSGAVLKI 169

Query: 64  DRVQREDAGMYQCHVSADDDSAQMSAQVI 92
             +Q ED G+Y+C         +  A++ 
Sbjct: 170 FNIQLEDEGIYECEAENIRGKDKHQARIY 198

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  126 bits (317), Expect = 1e-33
 Identities = 50/324 (15%), Positives = 101/324 (31%), Gaps = 68/324 (20%)

Query: 17  PSGQVVVDVGHRIELHCRVS-PKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRV 66
               V  D    +   C    PK  S    W KD +    +             +    +
Sbjct: 9   VVVNVDDDGVISLNFECDKMTPK--SEFS-WSKDYVSTEDSPRLEVESKGNKTKMTFKDL 65

Query: 67  QREDAGMYQCHVSADDDSAQ------------MSAQVILGGELVEIASSNQVVVDVGHRI 114
             +D G+Y C V+  D  A             ++         V + S   V +    ++
Sbjct: 66  GMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQV 125

Query: 115 ELHCRVSPKRLSSAKA---WLKDGLVLRRNSD-----------EVLVLDRVQREDAGMYQ 160
               +       S  A   ++ +   +                  + ++++Q ED G Y 
Sbjct: 126 RFWMQAE---KLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYT 182

Query: 161 CHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLL 220
             ++DGK    S+  L+     +  +   +Q +   +  G                    
Sbjct: 183 FQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPH------------------ 224

Query: 221 SAAKMFEKHRILNVKKDESVILPCSAQGNPLPT-IKWYKQDSPVEESDRIQRIG--SSLS 277
                F ++    V  + +V+L C        T I WYK +  +   ++        +L 
Sbjct: 225 -----FVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLL 279

Query: 278 ISHVEESDSGVWNCVANNSEGQDK 301
           I+   + D+G++  +  +  G+DK
Sbjct: 280 ITEFSKKDAGIYEVILKDDRGKDK 303

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  104 bits (261), Expect = 9e-26
 Identities = 31/276 (11%), Positives = 74/276 (26%), Gaps = 48/276 (17%)

Query: 105 QVVVDVGHRIELHCRVS-PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHI 163
            V  D    +   C    PK  S    W KD +                           
Sbjct: 12  NVDDDGVISLNFECDKMTPK--SEFS-WSKDYVSTE------------------------ 44

Query: 164 EDGKYHMLSSG---ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLL 220
           +  +  + S G   ++    +   D    Y C   +    AS   ++   L         
Sbjct: 45  DSPRLEVESKGNKTKMTFKDLGMDDL-GIYSCDVTDTDGIASSYLIDEEELKRLLALSHE 103

Query: 221 SAAKMFEKHRILNVK---KDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS--- 274
                      L V+   K +      + + +    + +   +  + E  + +       
Sbjct: 104 HKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNT 163

Query: 275 ---SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNK 331
               + +  +++ D G +     + +  +   + +     K       +L      ++ +
Sbjct: 164 GIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFK-------KLQKEAEFQRQE 216

Query: 332 RLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT 367
            +      F ++    V  + +V+L C        T
Sbjct: 217 WIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKET 252

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 67.3 bits (164), Expect = 9e-13
 Identities = 17/141 (12%), Positives = 42/141 (29%), Gaps = 19/141 (13%)

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDR--IQRIG--SSLSISHVEESDSGVW 289
                S+   C     P     W K     E+S R  ++  G  + ++   +   D G++
Sbjct: 15  DDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIY 73

Query: 290 NCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVK 349
           +C   +++G               +++   EL          +        +    + + 
Sbjct: 74  SCDVTDTDGIASS-----------YLIDEEELKRLLALSHEHKF--PTVPVKSELAVEIL 120

Query: 350 KDESVILPCSAQ-GNPLPTIK 369
           +   V     A+  +    + 
Sbjct: 121 EKGQVRFWMQAEKLSGNAKVN 141

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 51.5 bits (123), Expect = 1e-07
 Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 7/80 (8%)

Query: 20  QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR-------RNSDEVLVLDRVQREDAG 72
              V     + L C+V+  +  +   W KD   +        ++    L++    ++DAG
Sbjct: 230 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAG 289

Query: 73  MYQCHVSADDDSAQMSAQVI 92
           +Y+  +  D    +   +++
Sbjct: 290 IYEVILKDDRGKDKSRLKLV 309

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  125 bits (315), Expect = 2e-33
 Identities = 57/319 (17%), Positives = 107/319 (33%), Gaps = 63/319 (19%)

Query: 7   VKSSLSIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDG----------LVL 53
            +        P  Q+ V  G      C+ +  PK R++    W K G          +  
Sbjct: 3   GEEPPRFIKEPKDQIGV-SGGVASFVCQATGDPKPRVT----WNKKGKKVNSQRFETIEF 57

Query: 54  RRNSDEVLVLDRVQR-EDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQ------- 105
             ++  VL +  ++   D  +Y+C          + A++ +  E    +           
Sbjct: 58  DESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQL 117

Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
            VV+      + C  S  P   ++    W KD L +  ++                    
Sbjct: 118 KVVERTRTATMLCAASGNPDPEIT----WFKDFLPVDPSAS------------------- 154

Query: 163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSA 222
             +G+   L SG L I   +E+D+ + Y+C   N          N   L +         
Sbjct: 155 --NGRIKQLRSGALQIESSEETDQGK-YECVATNSAGVRYSSPAN---LYVRVQNVAPRF 208

Query: 223 AKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVE 282
           + +   H    +    +V + C A G+P+P +KW +    +   D +        +   +
Sbjct: 209 SILPMSHE---IMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPV--GRNVLELTD 263

Query: 283 ESDSGVWNCVANNSEGQDK 301
             DS  + CVA +S G  +
Sbjct: 264 VKDSANYTCVAMSSLGVIE 282

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  115 bits (289), Expect = 9e-30
 Identities = 55/272 (20%), Positives = 93/272 (34%), Gaps = 57/272 (20%)

Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
            +   G      C+ +  PK R++    W K G  +     E +  D             
Sbjct: 16  QIGVSGGVASFVCQATGDPKPRVT----WNKKGKKVNSQRFETIEFDE------------ 59

Query: 163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSA 222
                    +   L I  +        Y+C   N +   +       +L++    +L S 
Sbjct: 60  --------SAGAVLRIQPLRTPRDENVYECVAQNSVGEIT----VHAKLTVLREDQLPSG 107

Query: 223 AKMFEKH-RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLS 277
               +   ++  V++  +  + C+A GNP P I W+K   PV+ S    RI      +L 
Sbjct: 108 FPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQ 167

Query: 278 ISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAA 337
           I   EE+D G + CVA NS G                  S   L +   +        A 
Sbjct: 168 IESSEETDQGKYECVATNSAGVRYS--------------SPANLYVRVQNV-------AP 206

Query: 338 KMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
           +         +    +V + C A G+P+P +K
Sbjct: 207 RFSILPMSHEIMPGGNVNITCVAVGSPMPYVK 238

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 12/98 (12%)

Query: 2   QLFIQVKSSL-SIEMSPSGQVVVDVGHRIELHCRV--SPK-RLSSAKAWLKDGLVLRRNS 57
            L+++V++      + P    ++  G  + + C    SP   +     W++    L    
Sbjct: 196 NLYVRVQNVAPRFSILPMSHEIM-PGGNVNITCVAVGSPMPYVK----WMQGAEDLTPED 250

Query: 58  DEV---LVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
           D      VL+    +D+  Y C   +     +  AQ+ 
Sbjct: 251 DMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQIT 288

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  123 bits (311), Expect = 5e-33
 Identities = 47/305 (15%), Positives = 100/305 (32%), Gaps = 41/305 (13%)

Query: 12  SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDA 71
            IE S   ++VV  G  + L C  +   +           +    S  +L  +    ++ 
Sbjct: 6   VIEPSVP-ELVVKPGATVTLRCVGN-GSVEWDGPPSPHWTLYSDGSSSILSTNNATFQNT 63

Query: 72  GMYQCHVSADDDSAQMSAQV-ILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKA 130
           G Y+C    D      +  + +          + +VVV       L C ++   L +  +
Sbjct: 64  GTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVS 123

Query: 131 WLK-DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRS 189
            ++  G  L R+                          Y         IH+       + 
Sbjct: 124 LVRVRGRPLMRH------------------------TNYSFSPWHGFTIHRAKFIQS-QD 158

Query: 190 YQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN 249
           YQC  +    G  ++S+    + L   K +     +      L   + E+  + CSA   
Sbjct: 159 YQCSALMG--GRKVMSI---SIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSV 213

Query: 250 PLPTIKWYKQDSPVEESDRIQRI-------GSSLSISHVEESDSGVWNCVANNSEGQDKM 302
            +    + + ++      +             +L++  V+   +G ++CVA+N +G+   
Sbjct: 214 DVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHST 273

Query: 303 QLFIQ 307
            +F +
Sbjct: 274 SMFFR 278

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 86.2 bits (213), Expect = 2e-19
 Identities = 29/271 (10%), Positives = 66/271 (24%), Gaps = 66/271 (24%)

Query: 102 SSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 161
           S  ++VV  G  + L C  +   +           +    S  +L  +    ++ G Y+C
Sbjct: 10  SVPELVVKPGATVTLRCVGN-GSVEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRC 68

Query: 162 HIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLS 221
                     ++  L +                                           
Sbjct: 69  TEPGDPLGGSAAIHLYVK-----------------------------------------D 87

Query: 222 AAKMF-EKHRILNVKKDESVILPCSAQG-NPLPTIKWYKQDS-PVEESDRIQ-RIGSSLS 277
            A+ +    + + V +D+  +LPC          +   +    P+              +
Sbjct: 88  PARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFT 147

Query: 278 ISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAA 337
           I   +   S  + C A     +                + S  + +         +    
Sbjct: 148 IHRAKFIQSQDYQCSALMGGRK----------------VMSISIRLKVQK----VIPGPP 187

Query: 338 KMFEKHRILNVKKDESVILPCSAQGNPLPTI 368
            +      L   + E+  + CSA    +   
Sbjct: 188 ALTLVPAELVRIRGEAAQIVCSASSVDVNFD 218

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 78.1 bits (192), Expect = 1e-16
 Identities = 32/184 (17%), Positives = 59/184 (32%), Gaps = 27/184 (14%)

Query: 3   LFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRN----- 56
           L+++  +     ++    VVV       L C ++   L +  + ++  G  L R+     
Sbjct: 83  LYVKDPARPWNVLAQE--VVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSF 140

Query: 57  -SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIA------SSNQVVVD 109
                  + R +   +  YQC          MS  + L  + V            ++V  
Sbjct: 141 SPWHGFTIHRAKFIQSQDYQCSALM-GGRKVMSISIRLKVQKVIPGPPALTLVPAELVRI 199

Query: 110 VGHRIELHCRVSPKRLSSAKAWLKDGLVL-----------RRNSDEVLVLDRVQREDAGM 158
            G   ++ C  S   ++       +   L           R      L LD+V  + AG 
Sbjct: 200 RGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGN 259

Query: 159 YQCH 162
           Y C 
Sbjct: 260 YSCV 263

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 66.5 bits (162), Expect = 1e-12
 Identities = 22/142 (15%), Positives = 42/142 (29%), Gaps = 32/142 (22%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNC 291
           L VK   +V L C   G    +++W    SP           S LS ++    ++G + C
Sbjct: 14  LVVKPGATVTLRCVGNG----SVEWDGPPSPHWTLYSDGS-SSILSTNNATFQNTGTYRC 68

Query: 292 VANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMF-EKHRILNVKK 350
                                    ++  L +             A+ +    + + V +
Sbjct: 69  TEPGDPLGGS---------------AAIHLYVK----------DPARPWNVLAQEVVVFE 103

Query: 351 DESVILPCSAQG-NPLPTIKYR 371
           D+  +LPC          +   
Sbjct: 104 DQDALLPCLLTDPVLEAGVSLV 125

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  123 bits (311), Expect = 1e-32
 Identities = 54/281 (19%), Positives = 79/281 (28%), Gaps = 46/281 (16%)

Query: 99  EIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQR 153
           E     Q+V   G  +EL C            W+KDG  L  +       + L +     
Sbjct: 11  EPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASH 70

Query: 154 EDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSL 213
           ED+G Y C          +   L    V  +D   S            + +       + 
Sbjct: 71  EDSGAYSCRQRL------TQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTR 124

Query: 214 TENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI- 272
            E              ++L V    +V   C A GNP P+I W K         RI  I 
Sbjct: 125 PERMDK----------KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIK 174

Query: 273 ----GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDE 328
                 SL +  V  SD G + CV  N  G  +                +  L + +   
Sbjct: 175 LRHQQWSLVMESVVPSDRGNYTCVVENKFGSIR---------------QTYTLDVLERSP 219

Query: 329 KNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
               L +                  V   C    +  P I+
Sbjct: 220 HRPILQA-----GLPANQTAVLGSDVEFHCKVYSDAQPHIQ 255

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  110 bits (276), Expect = 1e-27
 Identities = 59/348 (16%), Positives = 98/348 (28%), Gaps = 100/348 (28%)

Query: 13  IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQ 67
            E     Q+V   G  +EL C            W+KDG  L  +       + L +    
Sbjct: 10  PEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNAS 69

Query: 68  REDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQ---------------------- 105
            ED+G Y C            +  +            +                      
Sbjct: 70  HEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMD 129

Query: 106 ---VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLR----------RNSDEVLVLD 149
              + V   + +   C  +  P   +S    WLK+G   R          R+    LV++
Sbjct: 130 KKLLAVPAANTVRFRCPAAGNPTPSIS----WLKNGREFRGEHRIGGIKLRHQQWSLVME 185

Query: 150 RVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRG 209
            V   D G Y C +E+        G +           ++Y             L V   
Sbjct: 186 SVVPSDRGNYTCVVEN------KFGSI----------RQTYT------------LDV--- 214

Query: 210 RLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDS-------- 261
            L  + ++ +L A     +           V   C    +  P I+W K           
Sbjct: 215 -LERSPHRPILQAGLPANQT----AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGP 269

Query: 262 ---------PVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD 300
                        ++   +    LS+ +V   D+G + C+A NS G  
Sbjct: 270 DGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFS 317

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 46.9 bits (111), Expect = 5e-06
 Identities = 24/97 (24%), Positives = 31/97 (31%), Gaps = 29/97 (29%)

Query: 21  VVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVL----------------------RR 55
               +G  +E HC+V     S A+    WLK   V                         
Sbjct: 232 QTAVLGSDVEFHCKVY----SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTD 287

Query: 56  NSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
              EVL L  V  EDAG Y C        +  SA ++
Sbjct: 288 KELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV 324

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score =  118 bits (298), Expect = 2e-31
 Identities = 48/293 (16%), Positives = 93/293 (31%), Gaps = 46/293 (15%)

Query: 13  IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAG 72
           I + P    V      + LHC V     SS+  W  +G   + ++     +      D+G
Sbjct: 4   ITLQPPWVSVF-QEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPS-YRITSASVNDSG 61

Query: 73  MYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWL 132
            Y+C       S  +  ++  G  L++++S    V   G  + L C     +L     + 
Sbjct: 62  EYRCQRGLSGRSDPIQLEIHRGWLLLQVSSR---VFTEGEPLALRCHAWKDKLVYNVLYY 118

Query: 133 KDGLVLR-RNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQ 191
           ++G   +  + +  L + +      G                               +Y 
Sbjct: 119 RNGKAFKFFHWNSNLTILKTNISHNG-------------------------------TYH 147

Query: 192 CRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL 251
           C G+ K    S          ++   + L  A +        + +   V L C  +    
Sbjct: 148 CSGMGKHRYTS--------AGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQ 199

Query: 252 -PTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ 303
            P ++ Y       ++ R +   S   I      DSG++ C A   +G    +
Sbjct: 200 RPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKR 252

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 85.0 bits (210), Expect = 4e-19
 Identities = 37/270 (13%), Positives = 72/270 (26%), Gaps = 77/270 (28%)

Query: 100 IASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMY 159
                 V V     + LHC V     SS+  W  +G   + ++     +      D+G Y
Sbjct: 5   TLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPS-YRITSASVNDSGEY 63

Query: 160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRL 219
           +C                      SD                  L ++RG L L  + R+
Sbjct: 64  RCQRGLS---------------GRSD---------------PIQLEIHRGWLLLQVSSRV 93

Query: 220 LSAAKMFEKHRILNVKKDESVILPCSAQGN-PLPTIKWYKQDSPVEESDRIQRIGSSLSI 278
                           + E + L C A  +  +  + +Y+     +         S+L+I
Sbjct: 94  --------------FTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHW----NSNLTI 135

Query: 279 SHVEESDSGVWNCVANNSEGQ--DKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSA 336
                S +G ++C            + + ++       + +S    + +           
Sbjct: 136 LKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLE----------- 184

Query: 337 AKMFEKHRILNVKKDESVILPCSAQGNPLP 366
                            V L C  +     
Sbjct: 185 --------------GNLVTLSCETKLLLQR 200

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 84.6 bits (209), Expect = 6e-19
 Identities = 34/179 (18%), Positives = 63/179 (35%), Gaps = 12/179 (6%)

Query: 10  SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR-RNSDEVLVLDRVQR 68
            L +++S     V   G  + L C     +L     + ++G   +  + +  L + +   
Sbjct: 84  WLLLQVSSR---VFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNI 140

Query: 69  EDAGMYQCHV--SADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLS 126
              G Y C         SA +S  V        + +S    +  G+ + L C        
Sbjct: 141 SHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQR 200

Query: 127 SA----KAWLKDGLVLR-RNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-SGELIIH 179
                  ++      LR RN+     +   +RED+G+Y C       ++L  S EL + 
Sbjct: 201 PGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQ 259

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 61.9 bits (150), Expect = 4e-11
 Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 36/141 (25%)

Query: 233 NVKKDESVILPCSAQGNPLP-TIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNC 291
           +V ++E+V L C     P   + +W+   +  + S        S  I+    +DSG + C
Sbjct: 12  SVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST------PSYRITSASVNDSGEYRC 65

Query: 292 VANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKD 351
               S   D +QL I               ++ QV  +                    + 
Sbjct: 66  QRGLSGRSDPIQLEIHRGW-----------LLLQVSSR-----------------VFTEG 97

Query: 352 ESVILPCSAQGN-PLPTIKYR 371
           E + L C A  +  +  + Y 
Sbjct: 98  EPLALRCHAWKDKLVYNVLYY 118

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 46.4 bits (110), Expect = 4e-06
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 5   IQVKSSLSI-EMSPSGQVVVDVGHRIELHCRVSPKRLSSA----KAWLKDGLVLR-RNSD 58
           + VK       ++ S    +  G+ + L C               ++      LR RN+ 
Sbjct: 163 VTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTS 222

Query: 59  EVLVLDRVQREDAGMYQCHVS 79
               +   +RED+G+Y C  +
Sbjct: 223 SEYQILTARREDSGLYWCEAA 243

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  119 bits (299), Expect = 2e-30
 Identities = 49/376 (13%), Positives = 99/376 (26%), Gaps = 91/376 (24%)

Query: 16  SPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE--------VLVLDRVQ 67
             +  V VDV   I L   V      S   W+     L               +V+ ++ 
Sbjct: 53  YEAAAVEVDVSASITLQVLVDAPGNISCL-WVFKHSSLNCQPHFDLQNRGVVSMVILKMT 111

Query: 68  REDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVS--PK-R 124
              AG Y   + ++  +  +   V +   L+           + ++  L C     P+  
Sbjct: 112 ETQAGEYLLFIQSEATNYTILFTVSIRNTLL-YTLRRPYFRKMENQDALVCISESVPEPI 170

Query: 125 LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184
           +     W+          +E                         ++   E ++H++  +
Sbjct: 171 VE----WVLCDSQGESCKEE----------------------SPAVVKKEEKVLHELFGT 204

Query: 185 DRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPC 244
           D     +C   N+L          GR   T    +            L +K  E + + C
Sbjct: 205 D----IRCCARNEL----------GR-ECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRC 249

Query: 245 SA-QGNPLPTIKWYKQDSPVEESDRIQRIG----------SSLSISHVEESDSGVWNCVA 293
            A   N    + W  ++  +EE +  +                 +S V  +D+G + C +
Sbjct: 250 KAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSS 309

Query: 294 NNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDES 353
           +                       S  + I +    N                 + + E 
Sbjct: 310 SKHPS------------------QSALVTIVEKGFINAT--------NSSEDYEIDQYEE 343

Query: 354 VILPCSAQGNPLPTIK 369
                  +  P     
Sbjct: 344 FCFSVRFKAYPQIRCT 359

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  115 bits (290), Expect = 4e-29
 Identities = 37/327 (11%), Positives = 90/327 (27%), Gaps = 49/327 (14%)

Query: 2   QLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDG---LVLRR 55
              + ++++L   +       +   ++  L C     P+  +     W+         + 
Sbjct: 132 LFTVSIRNTLLYTLRRPYFRKM--ENQDALVCISESVPEPIVE----WVLCDSQGESCKE 185

Query: 56  NSDEVLVLD--RVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHR 113
            S  V+  +   +        +C    +          I   +  +  +  Q+ + VG  
Sbjct: 186 ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT-TLPQLFLKVGEP 244

Query: 114 IELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS 173
           + + C+           W  +   L   +                ++         M+  
Sbjct: 245 LWIRCKAVHVNHGFGLTWELENKALEEGNY---------------FEMSTYSTNRTMIRI 289

Query: 174 GELIIHQVDESDRYRSYQCRGVNKLTGASLLSV-NRGRLSLTENKRLLSAAKMFEKHRIL 232
               +  V  +D    Y C      + ++L+++  +G ++ T +                
Sbjct: 290 LFAFVSSVARNDT-GYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYE----------- 337

Query: 233 NVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCV 292
            + + E        +  P     W           +    G S+S     +   G +   
Sbjct: 338 -IDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFH 396

Query: 293 ANNSEGQD--KMQLFIQYA---HGKYH 314
           A N + Q      L I+     H  +H
Sbjct: 397 AENDDAQFTKMFTLNIRSGTKHHHHHH 423

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 95.9 bits (238), Expect = 5e-22
 Identities = 25/226 (11%), Positives = 58/226 (25%), Gaps = 58/226 (25%)

Query: 151 VQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRS--YQCRGVNKLTGASLLSVNR 208
              +D  + +C              LI H+ ++S   +S  Y     +       L    
Sbjct: 2   TGNQDLPVIKC-------------VLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQ- 47

Query: 209 GRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDR 268
                        ++    +   + V    S+ L          +  W  + S +     
Sbjct: 48  -------------SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPH 94

Query: 269 IQ---RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQ 325
                R   S+ I  + E+ +G +     +      +   +                   
Sbjct: 95  FDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVS------------------ 136

Query: 326 VDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371
                   +    ++   R    K +    L C ++  P P +++ 
Sbjct: 137 --------IRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWV 174

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 91.7 bits (227), Expect = 1e-20
 Identities = 42/306 (13%), Positives = 74/306 (24%), Gaps = 68/306 (22%)

Query: 66  VQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQ-VVVDVGHRIELHCRVSPKR 124
                +  Y     + +D         L  +          V VDV   I L   V    
Sbjct: 22  SSVGKSSSYPMVSESPEDLG-----CALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPG 76

Query: 125 LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184
             S   W+     L                                     ++I ++ E+
Sbjct: 77  NISCL-WVFKHSSLNCQ----------------------PHFDLQNRGVVSMVILKMTET 113

Query: 185 DRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPC 244
                Y     ++ T  ++        +++    LL     +   R    K +    L C
Sbjct: 114 QA-GEYLLFIQSEATNYTI------LFTVSIRNTLL-----YTLRRPYFRKMENQDALVC 161

Query: 245 SAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL 304
            ++  P P ++W   DS  E                + E       C A N  G++  +L
Sbjct: 162 ISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRL 221

Query: 305 FIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSA-QGN 363
           F                           +            L +K  E + + C A   N
Sbjct: 222 FT--------------------------IDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVN 255

Query: 364 PLPTIK 369
               + 
Sbjct: 256 HGFGLT 261

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score =  112 bits (282), Expect = 6e-29
 Identities = 40/307 (13%), Positives = 89/307 (28%), Gaps = 52/307 (16%)

Query: 20  QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE--VLVLDRVQREDAGMYQCH 77
           +++V+ G  + L C            W           ++    + ++ +    G Y C 
Sbjct: 21  ELIVEAGDTLSLTCIDPDF-----VRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCS 75

Query: 78  VSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLV 137
            S   +    S  V +            +         + C ++  ++S       DG  
Sbjct: 76  NS---NGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKS 132

Query: 138 LRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197
           L                          D  +       + I  V  +      +C     
Sbjct: 133 LP------------------------TDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRD 168

Query: 198 LTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP-TIKW 256
            T      ++  + +L   + + +   +        +KK ++  + C+ +         W
Sbjct: 169 GT-----WLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMW 223

Query: 257 YKQDSPVEESDRIQR-----------IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLF 305
            K +   +   +++               +L+IS     DSGV+ C ANN+ G   +   
Sbjct: 224 LKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTT 283

Query: 306 IQ-YAHG 311
           ++    G
Sbjct: 284 LKVVEKG 290

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 82.1 bits (202), Expect = 6e-18
 Identities = 27/270 (10%), Positives = 61/270 (22%), Gaps = 74/270 (27%)

Query: 102 SSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE--VLVLDRVQREDAGMY 159
           + ++++V+ G  + L C            W           ++    + ++ +    G Y
Sbjct: 18  AQSELIVEAGDTLSLTCIDPDF-----VRWTFKTYFNEMVENKKNEWIQEKAEATRTGTY 72

Query: 160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRL 219
            C                                  N LT +  + V             
Sbjct: 73  TCSNS-------------------------------NGLTSSIYVFVR------------ 89

Query: 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI---GSSL 276
              AK+F     L  K+D   ++ C      +      + D     +D            
Sbjct: 90  -DPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGIT 148

Query: 277 SISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSA 336
             +           C A                        S +  +   +       + 
Sbjct: 149 IKNVKRAYHRLCVRCAAQRDGTWLH----------------SDKFTLKVREAIK----AI 188

Query: 337 AKMFEKHRILNVKKDESVILPCSAQGNPLP 366
             +        +KK ++  + C+ +     
Sbjct: 189 PVVSVPETSHLLKKGDTFTVVCTIKDVSTS 218

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 71.3 bits (174), Expect = 4e-14
 Identities = 24/205 (11%), Positives = 62/205 (30%), Gaps = 31/205 (15%)

Query: 3   LFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV-- 60
           +F++  + L +   P   +         + C ++  ++S       DG  L  +   V  
Sbjct: 86  VFVRDPAKLFLVGLP---LFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPN 142

Query: 61  -----LVLDRVQREDAGMYQCHVSADD---DSAQMSAQVILGGELVEI--ASSNQVVVDV 110
                 + +  +       +C    D     S + + +V    + + +        ++  
Sbjct: 143 PKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKK 202

Query: 111 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE----------------VLVLDRVQRE 154
           G    + C +     S    WLK     +  +                   L +   + +
Sbjct: 203 GDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVD 262

Query: 155 DAGMYQCHIEDGKYHMLSSGELIIH 179
           D+G++ C+  +       +  L + 
Sbjct: 263 DSGVFMCYANNTFGSANVTTTLKVV 287

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 63.6 bits (154), Expect = 1e-11
 Identities = 19/140 (13%), Positives = 39/140 (27%), Gaps = 35/140 (25%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNC 291
           L V+  +++ L C         ++W  +    E  +      +       E + +G + C
Sbjct: 22  LIVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVENK---KNEWIQEKAEATRTGTYTC 74

Query: 292 VANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKD 351
             +N                     SS  + +             AK+F     L  K+D
Sbjct: 75  SNSNGLT------------------SSIYVFVR----------DPAKLFLVGLPLFGKED 106

Query: 352 ESVILPCSAQGNPLPTIKYR 371
              ++ C      +      
Sbjct: 107 SDALVRCPLTDPQVSQYSLI 126

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  110 bits (276), Expect = 9e-29
 Identities = 35/227 (15%), Positives = 75/227 (33%), Gaps = 34/227 (14%)

Query: 95  GELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG---------LVLRRNSDEV 145
           G  + +++++  +      I+L+  V+         W  +G                   
Sbjct: 1   GSSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIW 60

Query: 146 LVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLS 205
           L ++     D G Y   + DGK     + +L     DE+                     
Sbjct: 61  LQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAY-------------------- 100

Query: 206 VNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEE 265
               RL          A  +     ++ +++ +++ L C+  G+P P + W K +  + +
Sbjct: 101 AEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQ 160

Query: 266 SDRIQRI-----GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
           +D           +  +I+ V  +DSG +  V  N  G +     + 
Sbjct: 161 TDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 207

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 88.8 bits (220), Expect = 7e-21
 Identities = 21/138 (15%), Positives = 49/138 (35%), Gaps = 11/138 (7%)

Query: 238 ESVILPCS-AQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNCV 292
           E + L            + W    S +  SDR++         L I+    +D G +   
Sbjct: 18  EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVME 77

Query: 293 ANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH-RILNVKKD 351
             + +   +  + +              L    + EKN+     A++      ++ +++ 
Sbjct: 78  LFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNR-----ARVLGGLPDVVTIQEG 132

Query: 352 ESVILPCSAQGNPLPTIK 369
           +++ L C+  G+P P + 
Sbjct: 133 KALNLTCNVWGDPPPEVS 150

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 67.6 bits (165), Expect = 2e-13
 Identities = 26/198 (13%), Positives = 48/198 (24%), Gaps = 56/198 (28%)

Query: 19  GQVVVDVGHRIELHCRVSPKRLSSAKA---------WLKDG---------LVLRRNSDEV 60
           G  +      +++       +L S            W  +G                   
Sbjct: 1   GSSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIW 60

Query: 61  LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQ--------------- 105
           L ++     D G Y   +       Q +  +         A   +               
Sbjct: 61  LQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVL 120

Query: 106 ------VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE----------VL 146
                 V +  G  + L C V   P   +S    WLK+   L +                
Sbjct: 121 GGLPDVVTIQEGKALNLTCNVWGDPPPEVS----WLKNEKALAQTDHCNLKFEAGRTAYF 176

Query: 147 VLDRVQREDAGMYQCHIE 164
            ++ V   D+G Y   ++
Sbjct: 177 TINGVSTADSGKYGLVVK 194

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 45.6 bits (108), Expect = 7e-06
 Identities = 18/85 (21%), Positives = 26/85 (30%), Gaps = 17/85 (20%)

Query: 21  VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE----------VLVLDRVQ 67
           V +  G  + L C V   P   +S    WLK+   L +                 ++ V 
Sbjct: 127 VTIQEGKALNLTCNVWGDPPPEVS----WLKNEKALAQTDHCNLKFEAGRTAYFTINGVS 182

Query: 68  REDAGMYQCHVSADDDSAQMSAQVI 92
             D+G Y   V     S      V 
Sbjct: 183 TADSGKYGLVVKNKYGSETSDFTVS 207

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score =  112 bits (280), Expect = 1e-28
 Identities = 53/334 (15%), Positives = 93/334 (27%), Gaps = 77/334 (23%)

Query: 13  IEMSPSG-QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE--------VLVL 63
           + ++P G ++V++V     L C  S   +     W +      +   +        VL L
Sbjct: 1   LVVTPPGPELVLNVSSTFVLTCSGSAP-VV----WERMSQEPPQEMAKAQDGTFSSVLTL 55

Query: 64  DRVQREDAGMYQCHVS-----ADDDSAQMSAQVILGGELVEIASSNQVVVDV--GHRIEL 116
             +   D G Y C  +       D+  ++   V           + ++ + +     I +
Sbjct: 56  TNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITI 115

Query: 117 HCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGEL 176
            CRV+  +L       +    +                +   Y C    G   + S    
Sbjct: 116 PCRVTDPQLVV--TLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYY 173

Query: 177 IIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKK 236
           +      S          +N    A    V +G                           
Sbjct: 174 VYRLQVSS----------INVSVNAVQTVVRQG--------------------------- 196

Query: 237 DESVILPCSAQGNPLPTIKWYKQDSPVE---------ESDRIQRIGSSLSISHVEESDSG 287
            E++ L C   GN +   +W                   D    I S L I   E  DSG
Sbjct: 197 -ENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSG 255

Query: 288 VWNCVANNSEG--QDKMQLFIQ-----YAHGKYH 314
            + C    S    QD+  + I      + H  +H
Sbjct: 256 TYTCNVTESVNDHQDEKAINITVVESGHHHHHHH 289

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 80.1 bits (197), Expect = 3e-17
 Identities = 28/276 (10%), Positives = 69/276 (25%), Gaps = 75/276 (27%)

Query: 102 SSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE--------VLVLDRVQR 153
              ++V++V     L C  S   +     W +      +   +        VL L  +  
Sbjct: 6   PGPELVLNVSSTFVLTCSGSAP-VV----WERMSQEPPQEMAKAQDGTFSSVLTLTNLTG 60

Query: 154 EDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSL 213
            D G Y C   D +       + +   V +                              
Sbjct: 61  LDTGEYFCTHNDSRGLETDERKRLYIFVPDPTV--------------------------- 93

Query: 214 TENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG 273
                         +   + + +   + +PC     P   +  +++   V        + 
Sbjct: 94  -------GFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHEKKGDVA-----LPVP 140

Query: 274 SSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRL 333
                      +   + C     + +                + S    ++++       
Sbjct: 141 YDHQRGFSGIFEDRSYICKTTIGDRE----------------VDSDAYYVYRLQV----- 179

Query: 334 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
            S+  +        V++ E++ L C   GN +   +
Sbjct: 180 -SSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFE 214

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 62.8 bits (152), Expect = 3e-11
 Identities = 28/179 (15%), Positives = 51/179 (28%), Gaps = 23/179 (12%)

Query: 3   LFIQVKSSLSIEMSPSGQVV-VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVL 61
           +F+   +   +        + +     I + CRV+  +L       +    +        
Sbjct: 86  IFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVVT--LHEKKGDVALPVPYDH 143

Query: 62  VLDRVQREDAGMYQCHVSADD---DSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHC 118
                   +   Y C  +  D   DS       +    +    ++ Q VV  G  I L C
Sbjct: 144 QRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMC 203

Query: 119 RVS---------------PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
            V                  RL          +     S  +L +   + ED+G Y C+
Sbjct: 204 IVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRS--ILHIPSAELEDSGTYTCN 260

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 46.2 bits (109), Expect = 8e-06
 Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 18/108 (16%)

Query: 1   MQLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS---------------PKRLSSAKA 45
             ++    SS+++ ++   Q VV  G  I L C V                  RL     
Sbjct: 172 YYVYRLQVSSINVSVNAV-QTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVT 230

Query: 46  WLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93
                +     S  +L +   + ED+G Y C+V+   +  Q    + +
Sbjct: 231 DFLLDMPYHIRS--ILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  112 bits (281), Expect = 1e-28
 Identities = 49/322 (15%), Positives = 83/322 (25%), Gaps = 60/322 (18%)

Query: 14  EMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE---------VLVLD 64
           E      +V          C ++P        W KD      ++++          L   
Sbjct: 8   EREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFV 67

Query: 65  RVQREDAGMYQCHVSADDDSAQMSAQV-ILGGELVEIASSNQV---VVDVGHRIELHCRV 120
             + ED+G Y C V       ++      +  E     ++  +    + V     L C  
Sbjct: 68  PAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPY 127

Query: 121 SPKRLSSAK-----AWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE 175
                +         W KD   L                          D  +       
Sbjct: 128 MEFFKNENNELPKLQWYKDCKPLL------------------------LDNIHFSGVKDR 163

Query: 176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVK 235
           LI+  V E  R   Y C       G              E  +      +   +  + V 
Sbjct: 164 LIVMNVAEKHRGN-YTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVD 222

Query: 236 KDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR----------------IGSSLSIS 279
               + L C+  G       W    S ++E D +                  + + L+IS
Sbjct: 223 LGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNIS 282

Query: 280 HVEESD-SGVWNCVANNSEGQD 300
            +E       + C A N+ G D
Sbjct: 283 EIESRFYKHPFTCFAKNTHGID 304

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  102 bits (254), Expect = 9e-25
 Identities = 39/288 (13%), Positives = 79/288 (27%), Gaps = 68/288 (23%)

Query: 98  VEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE---------VLVL 148
            E      +V          C ++P        W KD      ++++          L  
Sbjct: 7   KEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWF 66

Query: 149 DRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNR 208
              + ED+G Y C + +  Y +         + + +  Y +                   
Sbjct: 67  VPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQA----------------- 109

Query: 209 GRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCS------AQGNPLPTIKWYKQDSP 262
                                + L V       L C        + N LP ++WYK   P
Sbjct: 110 ------------------IFKQKLPVAG--DGGLVCPYMEFFKNENNELPKLQWYKDCKP 149

Query: 263 VEESDRIQRI-GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGEL 321
           +   +         L + +V E   G + C A+ +    +           Y +    E 
Sbjct: 150 LLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQ-----------YPITRVIEF 198

Query: 322 IIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
           I  + ++  + ++    +   +  + V     + L C+  G       
Sbjct: 199 ITLEENKPTRPVI----VSPANETMEVDLGSQIQLICNVTGQLSDIAY 242

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 40.9 bits (95), Expect = 5e-04
 Identities = 16/107 (14%), Positives = 30/107 (28%), Gaps = 31/107 (28%)

Query: 13  IEMSPSGQVVVDVGHRIELHCRVS----PKRLSSAKAWLKDGLVLRRN------------ 56
           I    +  + VD+G +I+L C V+             W  +G V+  +            
Sbjct: 211 IVSPANETMEVDLGSQIQLICNVTGQLSDIAY-----WKWNGSVIDEDDPVLGEDYYSVE 265

Query: 57  ---------SDEVLVLDRVQRED-AGMYQCHVSADDDSAQMSAQVIL 93
                       VL +  ++       + C             Q+I 
Sbjct: 266 NPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  112 bits (281), Expect = 1e-28
 Identities = 54/326 (16%), Positives = 91/326 (27%), Gaps = 56/326 (17%)

Query: 12  SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKA--------WLKDGLVL----RRNSDE 59
           S     +   +  +G      C      L S +         W K G       RR  + 
Sbjct: 30  SCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNG 89

Query: 60  VLVLDRVQREDAG-MYQCHVS-ADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELH 117
            L +      D+   Y C V+  + D  Q   +  +      I  + ++     + I+L+
Sbjct: 90  DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLY 149

Query: 118 CRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELI 177
           C +   +  +   W K+   L                          DG  +  S   LI
Sbjct: 150 CGILYAKHYNNITWYKNNQELI------------------------IDGTKYSQSGQNLI 185

Query: 178 IHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKD 237
           IH  +  D    Y C             V      LT         K+    +I NV   
Sbjct: 186 IHNPELEDS-GRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKI-NVTIG 243

Query: 238 ESVILPCSAQGNPLP----TIKWYKQDSPVEESD---------RIQRIGSSLSISHVEES 284
           E   + C+A    L      I W      +   D               ++L   +V E 
Sbjct: 244 EPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEE 303

Query: 285 DSG-VWNCVANNSEGQDKM--QLFIQ 307
             G  + C  +N      +   + ++
Sbjct: 304 YIGNTYTCRGHNYYFDKTLTTTVVLE 329

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 94.9 bits (235), Expect = 3e-22
 Identities = 40/263 (15%), Positives = 73/263 (27%), Gaps = 45/263 (17%)

Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED 165
            +  +G      C      L S +   KD +V      +       + ++          
Sbjct: 39  DMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKN---------- 88

Query: 166 GKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKM 225
                   G+L I     +D +R Y C    K        V            +      
Sbjct: 89  --------GDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRS---------HIRKPPSC 131

Query: 226 FEKHRILNVKKDESVILPCS-AQGNPLPTIKWYKQDSPVEESD-RIQRIGSSLSISHVEE 283
             +   L       + L C          I WYK +  +     +  + G +L I + E 
Sbjct: 132 IPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPEL 191

Query: 284 SDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH 343
            DSG ++C  +  + +               +     L +    +   +L+   K+    
Sbjct: 192 EDSGRYDCYVHYDDVR---------IKNDIVVSRCKILTVIPSQDHRFKLILDPKI---- 238

Query: 344 RILNVKKDESVILPCSAQGNPLP 366
              NV   E   + C+A    L 
Sbjct: 239 ---NVTIGEPANITCTAVSTSLL 258

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 77.9 bits (191), Expect = 2e-16
 Identities = 34/216 (15%), Positives = 64/216 (29%), Gaps = 35/216 (16%)

Query: 1   MQLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV 60
             +   ++   S       ++     + I+L+C +   +  +   W K+   L  +  + 
Sbjct: 119 GIVRSHIRKPPSCIPETY-ELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKY 177

Query: 61  ------LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGEL---------VEIASSNQ 105
                 L++   + ED+G Y C+V  DD   +    V     L          ++    +
Sbjct: 178 SQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPK 237

Query: 106 VVVDVGHRIELHCRVS--PKRLSSAK-AWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
           + V +G    + C        +      W                   +   D G+Y   
Sbjct: 238 INVTIGEPANITCTAVSTSLLVDDVLIDWENPS-------------GWIIGLDFGVYSIL 284

Query: 163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKL 198
              G         L    V E     +Y CRG N  
Sbjct: 285 TSSGGIT---EATLYFENVTEEYIGNTYTCRGHNYY 317

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 56.0 bits (134), Expect = 6e-09
 Identities = 20/166 (12%), Positives = 35/166 (21%), Gaps = 36/166 (21%)

Query: 215 ENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL---------PTIKWYKQDSPVEE 265
           ++ + L+ + MF           E     C    + L           + W K       
Sbjct: 22  KDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRP 81

Query: 266 SDRIQRIGSSLSISHVEESDSG-VWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIH 324
            +R  +    L I++   +DS   + C      G                        I 
Sbjct: 82  LNRRVK-NGDLWIANYTSNDSHRRYLCTVTTKNGDCVQ--------------GIVRSHIR 126

Query: 325 QVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCS-AQGNPLPTIK 369
                            +   L       + L C          I 
Sbjct: 127 ----------KPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNIT 162

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  110 bits (275), Expect = 6e-28
 Identities = 51/322 (15%), Positives = 92/322 (28%), Gaps = 63/322 (19%)

Query: 20  QVVVDVGHRIELHCRVSPKRLSSAK----AWLKDG-----------------------LV 52
           QV   +G  + L C +    +         W + G                        V
Sbjct: 9   QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFV 68

Query: 53  LRRNSDEV----LVLDRVQREDAGMYQCHVSADDD-SAQMSAQVILGGELVEIASSNQVV 107
             R   E+    L +  ++ ED G Y C        S  +   + +  +    A   +V 
Sbjct: 69  AARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQ 128

Query: 108 VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGK 167
           +         C  +  R  +   W  D   +   S     L                   
Sbjct: 129 LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGT---------------- 172

Query: 168 YHMLSSGELIIHQVDESDRYRSYQCRGVNK-LTGASLLSVNRGRLSLTENKRLLSAAKMF 226
             +  +   I+    + D  ++  C+  ++      LL+V    L++             
Sbjct: 173 --VTVTSLWILVPSSQVDG-KNVTCKVEHESFEKPQLLTV---NLTV-----YYPPEVSI 221

Query: 227 EKHRILNVKKDESVILPCSAQGNPLPT-IKWYKQDSPVEESDRIQRIGSSLSISHVEESD 285
             +            L C A+ NP PT   W     P+      Q  G+ L I  V++  
Sbjct: 222 SGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQ--GAQLLIRPVDKPI 279

Query: 286 SGVWNCVANNSEGQDKMQLFIQ 307
           +    C   N+ G  + +L +Q
Sbjct: 280 NTTLICNVTNALGARQAELTVQ 301

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 90.2 bits (223), Expect = 1e-20
 Identities = 36/279 (12%), Positives = 72/279 (25%), Gaps = 55/279 (19%)

Query: 105 QVVVDVGHRIELHCRVSPKRLSSAK----AWLKDGLVLRRNSDEVLVLDRVQREDAGMYQ 160
           QV   +G  + L C +    +         W + G                       + 
Sbjct: 9   QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFV 68

Query: 161 CHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLL 220
                 +     +  L +  +   D   +Y C  V    G+         + L     +L
Sbjct: 69  AARLGAELR---NASLRMFGLRVEDE-GNYTCLFVTFPQGSR-----SVDIWLR----VL 115

Query: 221 SAAKMFEKHRILNVKKDESVILPC-SAQGNPLPTIKWYKQDSPVEESDRIQR-------I 272
           +  +   + + + +  +   +  C S  G P   I W+     +  + ++         +
Sbjct: 116 AKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTV 175

Query: 273 GSSLSISHVEESDSGVWNCVANNSEGQD----KMQLFIQYAHGKYHMLSSGELIIHQVDE 328
            S   +    + D     C   +   +      + L + Y           E+ I   D 
Sbjct: 176 TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYP---------PEVSISGYDN 226

Query: 329 KNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT 367
                                      L C A+ NP PT
Sbjct: 227 -----------------NWYLGQNEATLTCDARSNPEPT 248

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 72.8 bits (178), Expect = 1e-14
 Identities = 21/164 (12%), Positives = 38/164 (23%), Gaps = 18/164 (10%)

Query: 17  PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE------------VLVLD 64
              +V +         C  +  R  +   W  D   +   S              + +L 
Sbjct: 123 EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILV 182

Query: 65  RVQREDAGMYQCHVSADDDSAQMSAQVIL---GGELVEIASSNQVVVDVGHRIELHCRVS 121
              + D     C V  +         V L       V I+  +       +   L C   
Sbjct: 183 PSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDAR 242

Query: 122 PKRLSSAKAWLKDGLVLRRN---SDEVLVLDRVQREDAGMYQCH 162
                +   W      L          L++  V +       C+
Sbjct: 243 SNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICN 286

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 55.5 bits (133), Expect = 8e-09
 Identities = 12/91 (13%), Positives = 23/91 (25%), Gaps = 3/91 (3%)

Query: 5   IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---SDEVL 61
           + V     + +S          +   L C        +   W      L          L
Sbjct: 211 LTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQL 270

Query: 62  VLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
           ++  V +       C+V+    + Q    V 
Sbjct: 271 LIRPVDKPINTTLICNVTNALGARQAELTVQ 301

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 50.5 bits (120), Expect = 3e-07
 Identities = 21/166 (12%), Positives = 42/166 (25%), Gaps = 52/166 (31%)

Query: 232 LNVKKDESVILPCSAQGNPLPT-----IKWYKQDSP-------------VEESDRIQRIG 273
           +     +SV LPC  Q   +       + W +                   ES R++ + 
Sbjct: 10  VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVA 69

Query: 274 S---------SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIH 324
           +         SL +  +   D G + C+        +                   L + 
Sbjct: 70  ARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSV--------------DIWLRVL 115

Query: 325 QVDEKNKRLLSAAKMFEKHRILNVKKDESVILPC-SAQGNPLPTIK 369
              +    +            + +  +   +  C S  G P   I 
Sbjct: 116 AKPQNTAEVQK----------VQLTGEPVPMARCVSTGGRPPAQIT 151

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  106 bits (266), Expect = 1e-27
 Identities = 41/203 (20%), Positives = 76/203 (37%), Gaps = 42/203 (20%)

Query: 106 VVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHI 163
                G   E+ CRVS  P    S   WL     +   SD                    
Sbjct: 12  QEFKQGEDAEVVCRVSSSPAPAVS---WLYHNEEVTTISD-------------------- 48

Query: 164 EDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAA 223
              ++ ML++  L I  +++SD    Y+C G  +  G                  +++  
Sbjct: 49  --NRFAMLANNNLQILNINKSDEGI-YRCEGRVEARGEIDFRDII---------VIVNVP 96

Query: 224 KMFEKHRIL---NVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDR--IQRIGSSLSI 278
                 +       ++ E +   C A G+P P I W++    +EE+++  ++   + L++
Sbjct: 97  PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 156

Query: 279 SHVEESDSGVWNCVANNSEGQDK 301
            ++  SD G + C A N  G+D+
Sbjct: 157 RNIINSDGGPYVCRATNKAGEDE 179

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 85.6 bits (212), Expect = 5e-20
 Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 24/140 (17%)

Query: 233 NVKKDESVILPCSAQGNPLPTIKWYKQDSPVEE--SDRIQRI-GSSLSISHVEESDSGVW 289
             K+ E   + C    +P P + W   +  V     +R   +  ++L I ++ +SD G++
Sbjct: 13  EFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIY 72

Query: 290 NCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVK 349
            C        +              +     ++I  V         A  M +K      +
Sbjct: 73  RCEGRVEARGE--------------IDFRDIIVIVNVPP-------AISMPQKSFNATAE 111

Query: 350 KDESVILPCSAQGNPLPTIK 369
           + E +   C A G+P P I 
Sbjct: 112 RGEEMTFSCRASGSPEPAIS 131

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 81.4 bits (201), Expect = 2e-18
 Identities = 41/178 (23%), Positives = 63/178 (35%), Gaps = 32/178 (17%)

Query: 9   SSLSIEMSPSGQVVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSDE------- 59
           S L+     S Q     G   E+ CRVS  P    S   WL     +   SD        
Sbjct: 1   SMLTFREVVSPQEFK-QGEDAEVVCRVSSSPAPAVS---WLYHNEEVTTISDNRFAMLAN 56

Query: 60  -VLVLDRVQREDAGMYQC--HVSADDDSAQMSAQVILGG--ELVEIASSNQVVVDVGHRI 114
             L +  + + D G+Y+C   V A  +       VI+     +     S     + G  +
Sbjct: 57  NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEM 116

Query: 115 ELHCRV--SPK-RLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAGMYQCH 162
              CR   SP+  +S    W ++G ++  N       S+  L +  +   D G Y C 
Sbjct: 117 TFSCRASGSPEPAIS----WFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCR 170

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 51.7 bits (124), Expect = 5e-08
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 15/101 (14%)

Query: 2   QLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRV--SPK-RLSSAKAWLKDGLVLRRN-- 56
            + + V  ++S+            G  +   CR   SP+  +S    W ++G ++  N  
Sbjct: 90  IVIVNVPPAISMPQKSFNATAE-RGEEMTFSCRASGSPEPAIS----WFRNGKLIEENEK 144

Query: 57  -----SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
                S+  L +  +   D G Y C  +      +  A + 
Sbjct: 145 YILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 185

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  107 bits (269), Expect = 1e-26
 Identities = 52/350 (14%), Positives = 108/350 (30%), Gaps = 67/350 (19%)

Query: 7   VKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKA------WLKDGLVLRRNSDE- 59
            +S          +  +  G  + L C   P  L ++ +      W K+        +E 
Sbjct: 15  ARSCRFRGRHYKREFRL-EGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEE 73

Query: 60  --------VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIAS--SNQVVVD 109
                    L L    +ED+G Y C         +MS ++ +           S   ++ 
Sbjct: 74  TRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILT 133

Query: 110 VGHRIELHCRVSPKRLSSAKA----WLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED 165
           +     L C    +           W KD L+L +++++ L +                 
Sbjct: 134 LSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG--------------- 178

Query: 166 GKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKM 225
                  +  L++H V   D    Y+C            ++ R      + K+  +   +
Sbjct: 179 -------TTHLLVHDVALEDAGY-YRCVLTFAH-EGQQYNITRSIELRIKKKKEETIPVI 229

Query: 226 FEKHRILNVKKDESVILPCSA---QGNPLPTIKWYKQD-SPVEESDRIQRI--------- 272
               + ++      + +PC      G PL T+ W+  + + +E +    R+         
Sbjct: 230 ISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYS 289

Query: 273 -------GSSLSISHVEESDSGVW-NCVANNSEGQDKMQLFIQYAHGKYH 314
                     L    V   D  +   CV +N+     ++  ++  H  +H
Sbjct: 290 ENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKEHHHHHH 339

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 96.3 bits (239), Expect = 1e-22
 Identities = 45/290 (15%), Positives = 86/290 (29%), Gaps = 72/290 (24%)

Query: 103 SNQVVVDVGHRIELHCRVSPKRLSSAKA------WLKDGLVLRRNSDE---------VLV 147
             +  +  G  + L C   P  L ++ +      W K+        +E          L 
Sbjct: 26  KREFRL-EGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALW 84

Query: 148 LDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVN 207
           L    +ED+G Y C   +  Y    S EL + +  ++        + +   T   L    
Sbjct: 85  LLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVL---- 140

Query: 208 RGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD 267
                                             L    +      I+WYK    +++ +
Sbjct: 141 ------------------------------VCPDLSEFTRDKTDVKIQWYKDSLLLDKDN 170

Query: 268 RIQRI---GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIH 324
                    + L +  V   D+G + CV   +               +Y++  S EL I 
Sbjct: 171 EKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQ-----------QYNITRSIELRI- 218

Query: 325 QVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSA---QGNPLPTIKYR 371
               K K+  +   +    + ++      + +PC      G PL T+ + 
Sbjct: 219 ----KKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWW 264

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 71.6 bits (175), Expect = 4e-14
 Identities = 36/222 (16%), Positives = 78/222 (35%), Gaps = 34/222 (15%)

Query: 1   MQLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKA----WLKDGLVLRRN 56
           ++L +   +   +      Q++  +     L C    +           W KD L+L ++
Sbjct: 111 IELRVFENTDAFLPFISYPQILT-LSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKD 169

Query: 57  S--------DEVLVLDRVQREDAGMYQCHVSADDDSAQMSA----QVILGGELVE----- 99
           +           L++  V  EDAG Y+C ++   +  Q +     ++ +  +  E     
Sbjct: 170 NEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVI 229

Query: 100 IASSNQVVVDVGHRIELHCRVSPKRLS---SAKAWLKDGLVLRRNSDEVLVLDRVQREDA 156
           I+    +   +G R+ + C+V     +   +   W  +   +              R   
Sbjct: 230 ISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGG-------RVTE 282

Query: 157 GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKL 198
           G  Q + E+ + ++     LI   V   D +  ++C   N L
Sbjct: 283 GPRQEYSENNENYIEVP--LIFDPVTREDLHMDFKCVVHNTL 322

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  107 bits (268), Expect = 1e-26
 Identities = 40/209 (19%), Positives = 70/209 (33%), Gaps = 35/209 (16%)

Query: 106 VVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHI 163
           + V       L C+V+  PK +     W + G  +  +  +  + +              
Sbjct: 14  LNVRYQSNATLVCKVTGHPKPIVK---WYRQGKEIIADGLKYRIQEFKGG---------- 60

Query: 164 EDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAA 223
                      +LII  V + D    YQ R  N+    S        L +    ++    
Sbjct: 61  ---------YHQLIIASVTDDDATV-YQVRATNQGGSVS----GTASLEVEVPAKI-HLP 105

Query: 224 KMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GSSLSI 278
           K  E    ++  + E V +     G P P I W K    ++ +   Q I      S +  
Sbjct: 106 KTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFP 165

Query: 279 SHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
           + VE  D+G +   A N  G D+  + + 
Sbjct: 166 NGVERKDAGFYVVCAKNRFGIDQKTVELD 194

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 93.7 bits (233), Expect = 7e-22
 Identities = 31/144 (21%), Positives = 49/144 (34%), Gaps = 26/144 (18%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI------GSSLSISHVEESD 285
           LNV+   +  L C   G+P P +KWY+Q   +       RI         L I+ V + D
Sbjct: 14  LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDD 73

Query: 286 SGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRI 345
           + V+   A N  G                   +  L +     +    +   K  E    
Sbjct: 74  ATVYQVRATNQGGSVS---------------GTASLEV-----EVPAKIHLPKTLEGMGA 113

Query: 346 LNVKKDESVILPCSAQGNPLPTIK 369
           ++  + E V +     G P P I 
Sbjct: 114 VHALRGEVVSIKIPFSGKPDPVIT 137

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 74.4 bits (183), Expect = 3e-15
 Identities = 31/186 (16%), Positives = 58/186 (31%), Gaps = 43/186 (23%)

Query: 12  SIEMSPSGQVVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSDEV--------- 60
             +       V        L C+V+  PK +     W + G  +  +  +          
Sbjct: 6   HFKEELRNLNVR-YQSNATLVCKVTGHPKPIVK---WYRQGKEIIADGLKYRIQEFKGGY 61

Query: 61  --LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIA----------SSNQVVV 108
             L++  V  +DA +YQ   +    S   +A +      VE+               V  
Sbjct: 62  HQLIIASVTDDDATVYQVRATNQGGSVSGTASLE-----VEVPAKIHLPKTLEGMGAVHA 116

Query: 109 DVGHRIELHCRVSPKRLSSAKAWLKDGLVLR----------RNSDEVLVLDRVQREDAGM 158
             G  + +    S K       W K   ++           R+   ++  + V+R+DAG 
Sbjct: 117 LRGEVVSIKIPFSGKPDPVIT-WQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175

Query: 159 YQCHIE 164
           Y    +
Sbjct: 176 YVVCAK 181

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 15/103 (14%)

Query: 4   FIQVKSSLSIEMSPSGQ----VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR----- 54
            ++V+    I +  + +    V    G  + +    S K       W K   ++      
Sbjct: 93  SLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVIT-WQKGQDLIDNNGHY 151

Query: 55  -----RNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
                R+   ++  + V+R+DAG Y           Q + ++ 
Sbjct: 152 QVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score =  105 bits (262), Expect = 2e-26
 Identities = 43/304 (14%), Positives = 84/304 (27%), Gaps = 70/304 (23%)

Query: 22  VVDVGHRIELHCRVS---------------PKRLSSAKAWLKDGLVLRRNSDEVLVLDRV 66
           V++V  +  + C +                 +RL+    +  D       S +  V    
Sbjct: 14  VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSF-----SAKASVSVTA 68

Query: 67  QREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLS 126
           + E      C V   + S +    V +           +  V  G  + + C   P+   
Sbjct: 69  EDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRA-- 126

Query: 127 SAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDR 186
                  +G+  +       +L +   ED G                             
Sbjct: 127 ---KVTLNGVPAQPLGPRAQLLLKATPEDNG----------------------------- 154

Query: 187 YRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSA 246
            RS+ C    ++ G  +       L +    RL       +        ++      C A
Sbjct: 155 -RSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDER----DCPGNWTWPENSQQTPMCQA 209

Query: 247 QGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD--KMQL 304
            GNPLP +K  K  +                   V     G + C A +++G+   ++ +
Sbjct: 210 WGNPLPELKCLKDGTFPLPIGESVT---------VTRDLEGTYLCRARSTQGEVTREVTV 260

Query: 305 FIQY 308
            +  
Sbjct: 261 NVLS 264

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 69.3 bits (169), Expect = 1e-13
 Identities = 27/165 (16%), Positives = 50/165 (30%), Gaps = 18/165 (10%)

Query: 5   IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLD 64
           + + S  +  +  +   V   G  + + C   P+          +G+  +       +L 
Sbjct: 93  VTIYSFPAPNVILTKPEVS-EGTEVTVKCEAHPRA-----KVTLNGVPAQPLGPRAQLLL 146

Query: 65  RVQREDAGM-YQCHVSADDDSAQMSA------QVILGGELVEIASSNQVVVDVGHRIELH 117
           +   ED G  + C  + +     +        +V+ G  L E             +    
Sbjct: 147 KATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPM 206

Query: 118 CRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
           C+     L   K  LKDG         +     V R+  G Y C 
Sbjct: 207 CQAWGNPLPELK-CLKDG----TFPLPIGESVTVTRDLEGTYLCR 246

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 61.6 bits (149), Expect = 6e-11
 Identities = 33/280 (11%), Positives = 60/280 (21%), Gaps = 88/280 (31%)

Query: 107 VVDVGHRIELHCRVS---------------PKRLSSAKAWLKDGLVLRRNSDEVLVLDRV 151
           V++V  +  + C +                 +RL+    +  D       S +  V    
Sbjct: 14  VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSF-----SAKASVSVTA 68

Query: 152 QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRL 211
           + E      C +  G                                             
Sbjct: 69  EDEGTQRLTCAVILGN-----------------------------------------QSQ 87

Query: 212 SLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR 271
              +   + S            V +   V + C A      T+                 
Sbjct: 88  ETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGP------- 140

Query: 272 IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNK 331
             + L +    E +   ++C A         QL  +    +  +L    L          
Sbjct: 141 -RAQLLLKATPEDNGRSFSCSATLEVAG---QLIHKNQTRELRVLYGPRLDERDCPGN-- 194

Query: 332 RLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371
                             ++      C A GNPLP +K  
Sbjct: 195 --------------WTWPENSQQTPMCQAWGNPLPELKCL 220

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 16/91 (17%), Positives = 23/91 (25%), Gaps = 6/91 (6%)

Query: 2   QLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVL 61
           +L +     L     P          +    C+     L   K  LKDG         + 
Sbjct: 177 ELRVLYGPRLDERDCPGNWTWP-ENSQQTPMCQAWGNPLPELK-CLKDG----TFPLPIG 230

Query: 62  VLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
               V R+  G Y C   +          V 
Sbjct: 231 ESVTVTRDLEGTYLCRARSTQGEVTREVTVN 261

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  101 bits (254), Expect = 1e-25
 Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 41/198 (20%)

Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
             V  G  ++L CR +  P  +      W K    +   +   L+ + V  +DAG Y C 
Sbjct: 28  KAVLAGQFVKLCCRATGHPFVQYQ----WFKMNKEIPNGNTSELIFNAVHVKDAGFYVCR 83

Query: 163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSA 222
           + +      +                               L V     S   +   +S 
Sbjct: 84  VNN------NFTFEFSQWSQ---------------------LDVCDIPESFQRSVDGVSE 116

Query: 223 AK-MFEKH-RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISH 280
           +K           +    +++L C A G+P+P  +W+K + P+    +         + +
Sbjct: 117 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK-----KLYMVPY 171

Query: 281 VEESDSGVWNCVANNSEG 298
           V+    G + C   N   
Sbjct: 172 VDLEHQGTYWCHVYNDRD 189

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 99.6 bits (248), Expect = 8e-25
 Identities = 36/180 (20%), Positives = 61/180 (33%), Gaps = 31/180 (17%)

Query: 7   VKSSLSIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVL 63
           V     I ++P  + V+  G  ++L CR +  P  +      W K    +   +   L+ 
Sbjct: 15  VPRGSKITVNPESKAVL-AGQFVKLCCRATGHPFVQYQ----WFKMNKEIPNGNTSELIF 69

Query: 64  DRVQREDAGMYQC----------------HVSADDDSAQMSAQVILGGELVEIASSNQVV 107
           + V  +DAG Y C                 V    +S Q S   +   +L          
Sbjct: 70  NAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQK 129

Query: 108 VDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIE 164
           +  G  + L C               W K+ L L   + ++ ++  V  E  G Y CH+ 
Sbjct: 130 LMPGSTLVLQCVAVGSPIPHYQ----WFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVY 185

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 95.3 bits (237), Expect = 3e-23
 Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 20/141 (14%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNC 291
             V   + V L C A G+P    +W+K +  +   +      S L  + V   D+G + C
Sbjct: 28  KAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN-----TSELIFNAVHVKDAGFYVC 82

Query: 292 VANNSEGQDKM---QLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNV 348
             NN+   +     QL +      +     G               S  ++  +     +
Sbjct: 83  RVNNNFTFEFSQWSQLDVCDIPESFQRSVDGV------------SESKLQICVEPTSQKL 130

Query: 349 KKDESVILPCSAQGNPLPTIK 369
               +++L C A G+P+P  +
Sbjct: 131 MPGSTLVLQCVAVGSPIPHYQ 151

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 60.7 bits (147), Expect = 6e-11
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 9/105 (8%)

Query: 8   KSSLSIEMSPSGQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLD 64
           +S L I + P+ Q ++  G  + L C               W K+ L L   + ++ ++ 
Sbjct: 116 ESKLQICVEPTSQKLM-PGSTLVLQCVAVGSPIPHYQ----WFKNELPLTHETKKLYMVP 170

Query: 65  RVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIAS-SNQVVV 108
            V  E  G Y CHV  D DS       I+  EL  +    N+   
Sbjct: 171 YVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQT 215

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  101 bits (254), Expect = 1e-25
 Identities = 42/202 (20%), Positives = 69/202 (34%), Gaps = 37/202 (18%)

Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
             V VG     +C     P   +     W K+G  +        VL              
Sbjct: 16  QGVRVGGVASFYCAARGDPPPSIV----WRKNGKKVSGTQSRYTVL-------------- 57

Query: 163 IEDGKYHMLSSGELIIHQVDESDRYR---SYQCRGVNKLTGASLLSVNRGRLSLTENKRL 219
                      G + I +++     R    Y+C   N +  A         L++ E  + 
Sbjct: 58  --------EQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADA---TLTIYEGDKT 106

Query: 220 LSAAKMFEKH-RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS-SLS 277
            +   +  +      ++   +V++ C A GNP P I W K  + V+ S+    +    L 
Sbjct: 107 PAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQ 166

Query: 278 ISHVEESDSGVWNCVANNSEGQ 299
           I +  E D G + CVA NS G 
Sbjct: 167 IENSREEDQGKYECVAENSMGT 188

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 85.6 bits (212), Expect = 1e-19
 Identities = 30/143 (20%), Positives = 49/143 (34%), Gaps = 24/143 (16%)

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI---GSSLSISHVEE----SDS 286
           V+        C+A+G+P P+I W K    V  +     +      +SI  +E      D 
Sbjct: 18  VRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDD 77

Query: 287 GVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRIL 346
             + CVA N  G                      L    + E +K       + +     
Sbjct: 78  APYECVAENGVGDAVSA--------------DATL---TIYEGDKTPAGFPVITQGPGTR 120

Query: 347 NVKKDESVILPCSAQGNPLPTIK 369
            ++   +V++ C A GNP P I 
Sbjct: 121 VIEVGHTVLMTCKAIGNPTPNIY 143

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 72.9 bits (179), Expect = 3e-15
 Identities = 32/174 (18%), Positives = 55/174 (31%), Gaps = 40/174 (22%)

Query: 21  VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVL------------DR 65
             V VG     +C     P   +     W K+G  +        VL              
Sbjct: 16  QGVRVGGVASFYCAARGDPPPSIV----WRKNGKKVSGTQSRYTVLEQPGGISILRIEPV 71

Query: 66  VQREDAGMYQCHVS---ADDDSAQMSAQVILGGELVEIASS-----NQVVVDVGHRIELH 117
               D   Y+C       D  SA  +  +  G +               V++VGH + + 
Sbjct: 72  RAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMT 131

Query: 118 CRVS--PK-RLSSAKAWLKDGLVLRRNS------DEVLVLDRVQREDAGMYQCH 162
           C+    P   +     W+K+   +  ++      D  L ++  + ED G Y+C 
Sbjct: 132 CKAIGNPTPNIY----WIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECV 181

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 14/77 (18%)

Query: 12  SIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNS------DEVLV 62
            I   P  +V+  VGH + + C+    P   +     W+K+   +  ++      D  L 
Sbjct: 112 VITQGPGTRVIE-VGHTVLMTCKAIGNPTPNIY----WIKNQTKVDMSNPRYSLKDGFLQ 166

Query: 63  LDRVQREDAGMYQCHVS 79
           ++  + ED G Y+C   
Sbjct: 167 IENSREEDQGKYECVAE 183

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  100 bits (251), Expect = 2e-25
 Identities = 46/200 (23%), Positives = 78/200 (39%), Gaps = 42/200 (21%)

Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
           V   V       C V   P+  +S    W ++ ++++                       
Sbjct: 17  VDALVEEVATFMCAVESYPQPEIS----WTRNKILIKLF--------------------- 51

Query: 163 IEDGKYHMLSSG-ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLS 221
             D +Y +  +G  L I  V++SD    Y C   N +          G +      ++  
Sbjct: 52  --DTRYSIRENGQLLTILSVEDSDD-GIYCCTANNGV---------GGAVESCGALQVKM 99

Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ-RIGSSLSISH 280
             K+      + + +    +LPC+  GNP P++ W K DS + E+ RI      SL I +
Sbjct: 100 KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHN 159

Query: 281 VEESDSGVWNCVANNSEGQD 300
           V++ D+G + CVA NS G  
Sbjct: 160 VQKEDAGQYRCVAKNSLGTA 179

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 90.9 bits (226), Expect = 7e-22
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 27/141 (19%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD-RIQRI--GSSLSISHVEESDSGV 288
           ++   +E     C+ +  P P I W +    ++  D R      G  L+I  VE+SD G+
Sbjct: 17  VDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGI 76

Query: 289 WNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNV 348
           + C ANN  G                 + S   +          +    K+      + +
Sbjct: 77  YCCTANNGVGGA---------------VESCGALQ---------VKMKPKITRPPINVKI 112

Query: 349 KKDESVILPCSAQGNPLPTIK 369
            +    +LPC+  GNP P++ 
Sbjct: 113 IEGLKAVLPCTTMGNPKPSVS 133

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 80.2 bits (198), Expect = 5e-18
 Identities = 37/184 (20%), Positives = 66/184 (35%), Gaps = 44/184 (23%)

Query: 6   QVKSSLSIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVL--------R 54
           ++  +  I       V   V       C V   P+  +S    W ++ +++         
Sbjct: 3   KLPKAPVITTPLE-TVDALVEEVATFMCAVESYPQPEIS----WTRNKILIKLFDTRYSI 57

Query: 55  RNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL-GGELVEIASS-------NQV 106
           R + ++L +  V+  D G+Y C       +A       +     +++            V
Sbjct: 58  RENGQLLTILSVEDSDDGIYCC-------TANNGVGGAVESCGALQVKMKPKITRPPINV 110

Query: 107 VVDVGHRIELHCRV--SPK-RLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAG 157
            +  G +  L C    +PK  +S    W+K    LR N          L +  VQ+EDAG
Sbjct: 111 KIIEGLKAVLPCTTMGNPKPSVS----WIKGDSALRENSRIAVLESGSLRIHNVQKEDAG 166

Query: 158 MYQC 161
            Y+C
Sbjct: 167 QYRC 170

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 51.7 bits (124), Expect = 4e-08
 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 14/84 (16%)

Query: 5   IQVKSSLSIEMSPSGQVVVDVGHRIELHCRV--SPK-RLSSAKAWLKDGLVLRRN----- 56
           +QVK    I   P   V +  G +  L C    +PK  +S    W+K    LR N     
Sbjct: 95  LQVKMKPKITRPPI-NVKIIEGLKAVLPCTTMGNPKPSVS----WIKGDSALRENSRIAV 149

Query: 57  -SDEVLVLDRVQREDAGMYQCHVS 79
                L +  VQ+EDAG Y+C   
Sbjct: 150 LESGSLRIHNVQKEDAGQYRCVAK 173

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score =  102 bits (255), Expect = 6e-25
 Identities = 46/349 (13%), Positives = 92/349 (26%), Gaps = 81/349 (23%)

Query: 6   QVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAK---AWLKDGLVLRRN------ 56
           Q+    S  +  +  +   +G  + LHC  +    S       W K     ++N      
Sbjct: 9   QMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNP 68

Query: 57  ---------------------SDEVLVLDRVQREDAGMYQCHVSADDDSAQM-SAQVILG 94
                                +D  + L R++ ED G+Y C  +      +     + + 
Sbjct: 69  SMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVM 128

Query: 95  GELVEIASSNQVVVDV-----GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLD 149
            +        Q V+          +   C  +  +  S  +W                  
Sbjct: 129 AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQ------- 181

Query: 150 RVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASL---LSV 206
                        I +    +       +    E+ + +S  C     +        L+V
Sbjct: 182 ------------EIRNPNGTVTVISRYRLVPSREAHQ-QSLACIVNYHMDRFKESLTLNV 228

Query: 207 N---RGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT-IKWYKQDSP 262
                  +   +                    +   V L C A  NP  T   W   +  
Sbjct: 229 QYEPEVTIEGFDGNW---------------YLQRMDVKLTCKADANPPATEYHWTTLNGS 273

Query: 263 VEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEG--QDKMQLFIQYA 309
           + +    Q   +      +  S +G + C A N  G    ++++ I  A
Sbjct: 274 LPKGVEAQN-RTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEA 321

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 87.9 bits (217), Expect = 1e-19
 Identities = 46/283 (16%), Positives = 89/283 (31%), Gaps = 48/283 (16%)

Query: 98  VEIASSNQVVVDVGHRIELHCRVSPKRLSSAK---AWLKDGLVLRRNSDEVLVLDRVQRE 154
             +  ++ +   +G  + LHC  +    S       W K     ++N    +    +   
Sbjct: 16  QVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNV--AIYNPSMGVS 73

Query: 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214
               Y+  +E  +    + G + + +++  D    Y C      TG         +L+LT
Sbjct: 74  VLAPYRERVEFLRPS-FTDGTIRLSRLELEDE-GVYICEFATFPTGN-----RESQLNLT 126

Query: 215 ENKRLLSAAKMFEK-HRILNVKKDESVILPC-SAQGNPLPTIKWYKQDSPVEESDRIQR- 271
              +  +  +  +   R    + D+ ++  C SA G P   + W  +     E   I+  
Sbjct: 127 VMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNP 186

Query: 272 -----IGSSLSISHVEESDSGVWNCVANNSEG--QDKMQLFIQYAHGKYHMLSSGELIIH 324
                + S   +    E+      C+ N      ++ + L +QY           E+ I 
Sbjct: 187 NGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYE---------PEVTIE 237

Query: 325 QVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT 367
             D                      +   V L C A  NP  T
Sbjct: 238 GFDGNW-----------------YLQRMDVKLTCKADANPPAT 263

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 47.1 bits (111), Expect = 5e-06
 Identities = 21/164 (12%), Positives = 47/164 (28%), Gaps = 46/164 (28%)

Query: 232 LNVKKDESVILPCSAQGNP----LPTIKWYKQDSPVEE-----------------SDRIQ 270
           +       V+L CS         +  + W K  +  ++                  +R++
Sbjct: 24  MYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVE 83

Query: 271 RIGS-----SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQ 325
            +       ++ +S +E  D GV+ C        ++        +       +  +   Q
Sbjct: 84  FLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRE----SQLNLTVMAKPTNWIEGTQ 139

Query: 326 VDEKNKRLLSAAKMFEKHRILNVKKDESVILPC-SAQGNPLPTI 368
                             R    + D+ ++  C SA G P   +
Sbjct: 140 A---------------VLRAKKGQDDKVLVATCTSANGKPPSVV 168

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 9/79 (11%), Positives = 23/79 (29%), Gaps = 4/79 (5%)

Query: 5   IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----SDEV 60
           + V+    + +             ++L C+      ++   W      L +     +  +
Sbjct: 226 LNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTL 285

Query: 61  LVLDRVQREDAGMYQCHVS 79
                +    AG Y C  +
Sbjct: 286 FFKGPINYSLAGTYICEAT 304

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score =  104 bits (259), Expect = 1e-24
 Identities = 47/403 (11%), Positives = 108/403 (26%), Gaps = 78/403 (19%)

Query: 8   KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSS--AKAWLKDGLVLR----------- 54
           KS +     P  +V    G+ + + C   P  ++    K W + G               
Sbjct: 1   KSPIF---GPE-EVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYV 56

Query: 55  --------------RNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEI 100
                          N   V+ + ++ ++D+G Y+C +  +         + +      +
Sbjct: 57  SSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLL 116

Query: 101 ASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQ 160
             +    VD+G  + ++C    +     K+  K           V+        +     
Sbjct: 117 NDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQI---GLYPVLVIDSSGYVNPN----- 168

Query: 161 CHIEDGKYHMLSSGE------LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214
                G+  +   G       ++I+Q+  SD    Y C+  +        + +   L   
Sbjct: 169 ---YTGRIRLDIQGTGQLLFSVVINQLRLSDA-GQYLCQAGDDSNSNK-KNADLQVLKPE 223

Query: 215 ENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEE-------SD 267
                         H  L  +        C         +                  + 
Sbjct: 224 PELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNP 283

Query: 268 RIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVD 327
           + +    S+ I+ + + D+G + C A++     +      +                   
Sbjct: 284 QDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEE------------ 331

Query: 328 EKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKY 370
                    + +     ++      SV + C        +IKY
Sbjct: 332 ---------STIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKY 365

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 89.7 bits (221), Expect = 1e-19
 Identities = 40/313 (12%), Positives = 88/313 (28%), Gaps = 45/313 (14%)

Query: 20  QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL-----------RRNSDEVLVLDRVQR 68
            +  +V +  +  CR S                             ++    +V+  +++
Sbjct: 240 ALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRK 299

Query: 69  EDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQ----VVVDVGHRIELHCRVSPKR 124
           EDAG Y C   +D    + S        + E ++  +    V    G  + + C  + K 
Sbjct: 300 EDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKE 359

Query: 125 LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184
             S K W             ++  +   +     Y+  +   +     +  +I++Q+   
Sbjct: 360 SKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQ---YEGRLSLLEEPGNGTFTVILNQLTSR 416

Query: 185 DRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPC 244
           D    Y C         +           T   +++      +    +     E++ +PC
Sbjct: 417 DA-GFYWC-------LTN----GDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPC 464

Query: 245 S----AQGNPLPTIKWYKQDSPVEESDRIQRIGS-----------SLSISHVEESDSGVW 289
                         KW         S       +           SL+++ V  +D G +
Sbjct: 465 HFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWY 524

Query: 290 NCVANNSEGQDKM 302
            C         + 
Sbjct: 525 WCGVKQGHFYGET 537

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 82.0 bits (201), Expect = 3e-17
 Identities = 41/342 (11%), Positives = 91/342 (26%), Gaps = 70/342 (20%)

Query: 55  RNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRI 114
                 +V+++++  DAG Y C    D +S + +A        V       V  D+   +
Sbjct: 181 GQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNAD-----LQVLKPEPELVYEDLRGSV 235

Query: 115 ELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG 174
             HC + P+  + AK   +        + +V+V    +R  A   +  +         S 
Sbjct: 236 TFHCALGPEVANVAKFLCR---QSSGENCDVVVNTLGKRAPAFEGRILLNP--QDKDGSF 290

Query: 175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNV 234
            ++I  + + D  R Y C   +            G         +   + +     ++  
Sbjct: 291 SVVITGLRKEDAGR-YLCGAHSDGQLQ------EGSPIQAWQLFVNEESTIPRSPTVVKG 343

Query: 235 KKDESVILPCSAQGNPLPTIKWYKQDSPVEES-----------------------DRIQR 271
               SV + C        +IK++      +                         +    
Sbjct: 344 VAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGN 403

Query: 272 IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNK 331
              ++ ++ +   D+G + C+ N                                     
Sbjct: 404 GTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKII----------------------- 440

Query: 332 RLLSAAKMFEKHRILNVKKDESVILPCS----AQGNPLPTIK 369
                    +    +     E++ +PC              K
Sbjct: 441 ---EGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCK 479

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 97.5 bits (243), Expect = 3e-24
 Identities = 46/212 (21%), Positives = 79/212 (37%), Gaps = 42/212 (19%)

Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
           VVV  G        +S  P   +S    W +DG V+  ++                 Q  
Sbjct: 15  VVVLEGSTATFEAHISGFPVPEVS----WFRDGQVISTSTLP-------------GVQIS 57

Query: 163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSA 222
             DG+       +L I  V +++  R Y  +  N   G +  +     L +       +A
Sbjct: 58  FSDGRA------KLTIPAVTKANSGR-YSLKATNGS-GQATSTA---ELLVKAE----TA 102

Query: 223 AKMFEKH-RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ----RIGSSLS 277
              F +  + + V++   V L     G P P +K+Y+  + ++ S   Q        SL 
Sbjct: 103 PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLL 162

Query: 278 ISHVEESDSGVWNCVANNSEGQD--KMQLFIQ 307
           I+     DSG ++  A NS G+     +L +Q
Sbjct: 163 IAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 92.9 bits (231), Expect = 1e-22
 Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 30/145 (20%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI------GSSLSISHVEESD 285
           + V +  +        G P+P + W++    +  S             + L+I  V +++
Sbjct: 15  VVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKAN 74

Query: 286 SGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH-R 344
           SG ++  A N  GQ                 S+ EL++           +A   F +  +
Sbjct: 75  SGRYSLKATNGSGQAT---------------STAELLVKAE--------TAPPNFVQRLQ 111

Query: 345 ILNVKKDESVILPCSAQGNPLPTIK 369
            + V++   V L     G P P +K
Sbjct: 112 SMTVRQGSQVRLQVRVTGIPTPVVK 136

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 81.7 bits (202), Expect = 2e-18
 Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 43/191 (22%)

Query: 21  VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE-----------VLVLDRV 66
           VVV  G        +S  P   +S    W +DG V+  ++              L +  V
Sbjct: 15  VVVLEGSTATFEAHISGFPVPEVS----WFRDGQVISTSTLPGVQISFSDGRAKLTIPAV 70

Query: 67  QREDAGMYQCHVSADDDSAQMSAQVILGGELV--EIAS--SNQVVVDVGHRIELHCRVS- 121
            + ++G Y    +     A  +A++++  E           +  V   G ++ L  RV+ 
Sbjct: 71  TKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQ-GSQVRLQVRVTG 129

Query: 122 -PK-RLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQREDAGMYQCHI--EDGKY 168
            P   +     + +DG  ++ + D           L++     ED+G Y  +     G+ 
Sbjct: 130 IPTPVVK----FYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR- 184

Query: 169 HMLSSGELIIH 179
              S+ EL++ 
Sbjct: 185 -ATSTAELLVQ 194

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 97.6 bits (243), Expect = 4e-24
 Identities = 49/206 (23%), Positives = 77/206 (37%), Gaps = 39/206 (18%)

Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
                G      C+ +  P+ ++     W K G  +     EV+  D             
Sbjct: 16  QTGVSGGVASFICQATGDPRPKIV----WNKKGKKVSNQRFEVIEFD------------- 58

Query: 163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSA 222
             DG   +L     I       D    Y+C   N + G   +S    RL++    ++   
Sbjct: 59  --DGSGSVL----RIQPLRTPRDE-AIYECVASNNV-GEISVST---RLTVLREDQIPRG 107

Query: 223 AKMFEKH-RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-------GS 274
               +   ++  V++  +  + C+A GNP P I W+K   PV+ S+   RI         
Sbjct: 108 FPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIG 167

Query: 275 SLSISHVEESDSGVWNCVANNSEGQD 300
           +L I   EESD G + CVA NS G  
Sbjct: 168 ALQIEQSEESDQGKYECVATNSAGTR 193

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 89.9 bits (223), Expect = 3e-21
 Identities = 30/144 (20%), Positives = 49/144 (34%), Gaps = 24/144 (16%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GSSLSISHVE-ESD 285
                       C A G+P P I W K+   V              GS L I  +    D
Sbjct: 16  QTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRD 75

Query: 286 SGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRI 345
             ++ CVA+N+ G+                  S  L    V  +++       +    ++
Sbjct: 76  EAIYECVASNNVGEIS---------------VSTRL---TVLREDQIPRGFPTIDMGPQL 117

Query: 346 LNVKKDESVILPCSAQGNPLPTIK 369
             V++  +  + C+A GNP P I 
Sbjct: 118 KVVERTRTATMLCAASGNPDPEIT 141

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 70.6 bits (173), Expect = 2e-14
 Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 45/186 (24%)

Query: 12  SIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLD---- 64
               +P        G      C+ +  P+ ++     W K G  +     EV+  D    
Sbjct: 8   RFTRTPV-DQTGVSGGVASFICQATGDPRPKIV----WNKKGKKVSNQRFEVIEFDDGSG 62

Query: 65  ---RVQR----EDAGMYQCHV--SADDDSAQMSAQVILGGELVEIASS-----NQVVVDV 110
              R+Q      D  +Y+C    +  + S      V+   ++     +        VV+ 
Sbjct: 63  SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVER 122

Query: 111 GHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE------------VLVLDRVQRED 155
                + C  S  P   ++    W KD L +  +++              L +++ +  D
Sbjct: 123 TRTATMLCAASGNPDPEIT----WFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESD 178

Query: 156 AGMYQC 161
            G Y+C
Sbjct: 179 QGKYEC 184

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 45.6 bits (108), Expect = 7e-06
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 20/83 (24%)

Query: 12  SIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE--------- 59
           +I+M P    VV+      + C  S  P   ++    W KD L +  +++          
Sbjct: 110 TIDMGPQ-LKVVERTRTATMLCAASGNPDPEIT----WFKDFLPVDTSNNNGRIKQLRSE 164

Query: 60  ---VLVLDRVQREDAGMYQCHVS 79
               L +++ +  D G Y+C  +
Sbjct: 165 SIGALQIEQSEESDQGKYECVAT 187

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 96.7 bits (241), Expect = 6e-24
 Identities = 44/214 (20%), Positives = 75/214 (35%), Gaps = 43/214 (20%)

Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
           + V       L C+V+  PK  +     W + G  +  +  +     R+Q    G +Q  
Sbjct: 14  LNVRYQSNATLVCKVTGHPKPIVK----WYRQGKEIIADGLKY----RIQEFKGGYHQ-- 63

Query: 163 IEDGKYHMLSSGELIIHQVDESDRYRS--YQCRGVNKLTGASLLSVNRGRLSLTENKRLL 220
                        LII  V + D   +  YQ R  N+    S        L +    ++ 
Sbjct: 64  -------------LIIASVTDDD---ATVYQVRATNQGGSVS----GTASLEVEVPAKI- 102

Query: 221 SAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ-----RIGSS 275
              K  E    ++  + E V +     G P P I W K    ++ +   Q        S 
Sbjct: 103 HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSL 162

Query: 276 LSISHVEESDSGVWNCVANNSEGQDK--MQLFIQ 307
           +  + VE  D+G +   A N  G D+  ++L + 
Sbjct: 163 VFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 95.6 bits (238), Expect = 1e-23
 Identities = 32/146 (21%), Positives = 50/146 (34%), Gaps = 26/146 (17%)

Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI------GSSLSISHVEE 283
           R LNV+   +  L C   G+P P +KWY+Q   +       RI         L I+ V +
Sbjct: 12  RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTD 71

Query: 284 SDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH 343
            D+ V+   A N  G                   +  L +    +     +   K  E  
Sbjct: 72  DDATVYQVRATNQGGSVS---------------GTASLEVEVPAK-----IHLPKTLEGM 111

Query: 344 RILNVKKDESVILPCSAQGNPLPTIK 369
             ++  + E V +     G P P I 
Sbjct: 112 GAVHALRGEVVSIKIPFSGKPDPVIT 137

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 77.8 bits (192), Expect = 5e-17
 Identities = 31/181 (17%), Positives = 60/181 (33%), Gaps = 50/181 (27%)

Query: 21  VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE-----------VLVLDRV 66
           + V       L C+V+  PK  +     W + G  +  +  +            L++  V
Sbjct: 14  LNVRYQSNATLVCKVTGHPKPIVK----WYRQGKEIIADGLKYRIQEFKGGYHQLIIASV 69

Query: 67  QREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQ----------VVVDVGHRIEL 116
             +DA +YQ   +    S   +A +      VE+ +             V    G  + +
Sbjct: 70  TDDDATVYQVRATNQGGSVSGTASLE-----VEVPAKIHLPKTLEGMGAVHALRGEVVSI 124

Query: 117 HCRVS--PK-RLSSAKAWLKDGLVLRRNSD----------EVLVLDRVQREDAGMYQCHI 163
               S  P   ++    W K   ++  N             ++  + V+R+DAG Y    
Sbjct: 125 KIPFSGKPDPVIT----WQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180

Query: 164 E 164
           +
Sbjct: 181 K 181

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  100 bits (250), Expect = 8e-24
 Identities = 35/214 (16%), Positives = 65/214 (30%), Gaps = 39/214 (18%)

Query: 104 NQVVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 161
           N+       ++ L C     P    +   W +          +  +  R++ +       
Sbjct: 9   NETTY-ENGQVTLVCDAEGEPIPEIT---WKRAVDGFTFTEGDKSLDGRIEVK------- 57

Query: 162 HIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLS 221
                      S  L I  V  SD  R Y C   +++ G          L +        
Sbjct: 58  -------GQHGSSSLHIKDVKLSDSGR-YDCEAASRIGGHQ----KSMYLDIEY------ 99

Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD--RIQRIG----SS 275
           A K      I    +   + + C  + NP  +I W +    +   +   ++         
Sbjct: 100 APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI 159

Query: 276 LSISHVEESDSGVWNCVANNSEGQD--KMQLFIQ 307
           L I+   ++D G +NC A N  G    +  L + 
Sbjct: 160 LEIAPTSDNDFGRYNCTATNHIGTRFQEYILALA 193

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 89.5 bits (222), Expect = 4e-20
 Identities = 34/147 (23%), Positives = 51/147 (34%), Gaps = 36/147 (24%)

Query: 234 VKKDESVILPCSAQGNPLPTIKWYK-------QDSPVEESDRIQRIG----SSLSISHVE 282
             ++  V L C A+G P+P I W +        +       RI+  G    SSL I  V+
Sbjct: 12  TYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVK 71

Query: 283 ESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEK 342
            SDSG ++C A +  G  +                S  L I            A K    
Sbjct: 72  LSDSGRYDCEAASRIGGHQ---------------KSMYLDIE----------YAPKFISN 106

Query: 343 HRILNVKKDESVILPCSAQGNPLPTIK 369
             I    +   + + C  + NP  +I 
Sbjct: 107 QTIYYSWEGNPINISCDVKSNPPASIH 133

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 74.1 bits (182), Expect = 9e-15
 Identities = 29/178 (16%), Positives = 49/178 (27%), Gaps = 43/178 (24%)

Query: 21  VVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSDEV----------------LV 62
                  ++ L C     P    +   W +          +                 L 
Sbjct: 10  ETTYENGQVTLVCDAEGEPIPEIT---WKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLH 66

Query: 63  LDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIA-----SSNQVVVDVGHRIELH 117
           +  V+  D+G Y C  ++     Q S  +      +E A     +        G+ I + 
Sbjct: 67  IKDVKLSDSGRYDCEAASRIGGHQKSMYLD-----IEYAPKFISNQTIYYSWEGNPINIS 121

Query: 118 CRVSPKRLSSAKAWLKDGLVLRRNSDE-----------VLVLDRVQREDAGMYQCHIE 164
           C V     +S   W +D LVL   +             +L +      D G Y C   
Sbjct: 122 CDVKSNPPASIH-WRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 55.6 bits (134), Expect = 8e-09
 Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 13/100 (13%)

Query: 4   FIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE---- 59
           ++ ++ +     + +       G+ I + C V     +S   W +D LVL   +      
Sbjct: 94  YLDIEYAPKFISNQTIYYSW-EGNPINISCDVKSNPPASIH-WRRDKLVLPAKNTTNLKT 151

Query: 60  -------VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
                  +L +      D G Y C  +    +      + 
Sbjct: 152 YSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILA 191

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 95.9 bits (239), Expect = 1e-23
 Identities = 36/218 (16%), Positives = 69/218 (31%), Gaps = 55/218 (25%)

Query: 106 VVVDVGHRIELHCRVS----PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 161
           V   +G   +L C++     P        W + G  L                       
Sbjct: 17  VTTKLGEAAQLSCQIVGRPLPDI-----KWYRFGKELI---------------------- 49

Query: 162 HIEDGKYHMLSSGE---LIIHQVDESDRYRS--YQCRGVNKLTGASLLSVNRGRLSLTEN 216
             +  KY M S G    L +   ++ D      Y C   N++           +L L   
Sbjct: 50  --QSRKYKMSSDGRTHTLTVMTEEQED---EGVYTCIATNEVGEVET----SSKLLLQAT 100

Query: 217 KRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI---- 272
            +      + EK          ++ L     G P+P + W+     ++ S+ I       
Sbjct: 101 PQFHPGYPLKEK---YYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEH 157

Query: 273 GSSLSISHVE-ESDSGVWNCVANNSEGQD--KMQLFIQ 307
            + L + +V+ ++ +G +    +N  G     + + IQ
Sbjct: 158 YTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 95.1 bits (237), Expect = 2e-23
 Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 26/142 (18%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSG 287
           +  K  E+  L C   G PLP IKWY+    + +S + +        +L++   E+ D G
Sbjct: 17  VTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEG 76

Query: 288 VWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILN 347
           V+ C+A N  G+ +               +S +L++    + +         +       
Sbjct: 77  VYTCIATNEVGEVE---------------TSSKLLLQATPQFHPG-------YPLKEKYY 114

Query: 348 VKKDESVILPCSAQGNPLPTIK 369
                ++ L     G P+P + 
Sbjct: 115 GAVGSTLRLHVMYIGRPVPAMT 136

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 74.7 bits (184), Expect = 5e-16
 Identities = 31/173 (17%), Positives = 61/173 (35%), Gaps = 38/173 (21%)

Query: 21  VVVDVGHRIELHCRVS----PKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQ 67
           V   +G   +L C++     P        W + G  L ++             L +   +
Sbjct: 17  VTTKLGEAAQLSCQIVGRPLPDI-----KWYRFGKELIQSRKYKMSSDGRTHTLTVMTEE 71

Query: 68  REDAGMYQCHVSADDDSAQMSAQVILGGE---LVEIASSNQVVVDVGHRIELHCRVS--P 122
           +ED G+Y C  + +    + S++++L              +    VG  + LH      P
Sbjct: 72  QEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRP 131

Query: 123 K-RLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQRE-DAGMYQCHIE 164
              ++    W     +L+ + +           LV+  VQR+  AG Y+  + 
Sbjct: 132 VPAMT----WFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLS 180

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 95.6 bits (238), Expect = 2e-23
 Identities = 45/206 (21%), Positives = 78/206 (37%), Gaps = 42/206 (20%)

Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
           ++V  G    L+C+    P   +     W K G  +  + D+                  
Sbjct: 19  LIVSKGEPATLNCKAEGRPTPTIE----WYKGGERVETDKDDP----------------- 57

Query: 163 IEDGKYHMLSSGELIIHQVDESDRYRS----YQCRGVNKLTGASLLSVNRGRLSLTENKR 218
                  +L SG L   ++    + R     Y C   N L G ++        S   +  
Sbjct: 58  --RSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYL-GEAV--------SHDASLE 106

Query: 219 LLSAAKMFEKH-RILNVKKDESVILPCSA-QGNPLPTIKWYKQDSPVEESDRIQRI-GSS 275
           +      F ++   + V   E  ++ C   +G+P PTI W K  SP+++ D    I G  
Sbjct: 107 VAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGK 166

Query: 276 LSISHVEESDSGVWNCVANNSEGQDK 301
           L I++  +SD+G + CV  N  G+ +
Sbjct: 167 LMITYTRKSDAGKYVCVGTNMVGERE 192

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 75.2 bits (185), Expect = 4e-16
 Identities = 37/148 (25%), Positives = 51/148 (34%), Gaps = 37/148 (25%)

Query: 234 VKKDESVILPCSAQGNPLPTIKWYK------QDSPVEESDRIQRIGSSLSISHV-----E 282
           V K E   L C A+G P PTI+WYK       D     S R+     SL    +      
Sbjct: 21  VSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKS 80

Query: 283 ESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEK 342
             D GV+ CVA N  G+                     L +                F +
Sbjct: 81  RPDEGVYVCVARNYLGEAVSH--------------DASLEVA----------ILRDDFRQ 116

Query: 343 H-RILNVKKDESVILPCSA-QGNPLPTI 368
           +   + V   E  ++ C   +G+P PTI
Sbjct: 117 NPSDVMVAVGEPAVMECQPPRGHPEPTI 144

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 71.4 bits (175), Expect = 1e-14
 Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 41/174 (23%)

Query: 21  VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEV----------------L 61
           ++V  G    L+C+    P   +     W K G  +  + D+                 +
Sbjct: 19  LIVSKGEPATLNCKAEGRPTPTIE----WYKGGERVETDKDDPRSHRMLLPSGSLFFLRI 74

Query: 62  VLDRVQREDAGMYQCHVS---ADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHC 118
           V  R  R D G+Y C       +  S   S +V +  +      S+ +V  VG    + C
Sbjct: 75  VHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVA-VGEPAVMEC 133

Query: 119 RV---SPK-RLSSAKAWLKDGLVLRRNSDEV------LVLDRVQREDAGMYQCH 162
           +     P+  +S    W KDG  L    + +      L++   ++ DAG Y C 
Sbjct: 134 QPPRGHPEPTIS----WKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCV 183

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 15/78 (19%)

Query: 12  SIEMSPSGQVVVDVGHRIELHCRV---SPK-RLSSAKAWLKDGLVLRRNSDEV------L 61
               +PS  +V  VG    + C+     P+  +S    W KDG  L    + +      L
Sbjct: 113 DFRQNPSDVMVA-VGEPAVMECQPPRGHPEPTIS----WKKDGSPLDDKDERITIRGGKL 167

Query: 62  VLDRVQREDAGMYQCHVS 79
           ++   ++ DAG Y C  +
Sbjct: 168 MITYTRKSDAGKYVCVGT 185

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 94.5 bits (235), Expect = 4e-23
 Identities = 38/220 (17%), Positives = 77/220 (35%), Gaps = 61/220 (27%)

Query: 106 VVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVL----RRNSDEVLVLDRVQREDAGMY 159
           ++ D    + L C ++     L  +  W K+G+ L    +  S+    +++ + ED+G Y
Sbjct: 13  IIRDSLLPVTLQCNLTSSSHTLMYSY-WTKNGVELTATRKNASNMEYRINKPRAEDSGEY 71

Query: 160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRL 219
            C                                  + ++            ++     +
Sbjct: 72  HCV--------------------------------YHFVSAPK------ANATIE----V 89

Query: 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEE-----SDRIQRI-- 272
            +A  +    R  N  + +  ++ C + G P P   W K+++ V E     S R   I  
Sbjct: 90  KAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINK 149

Query: 273 --GSSLSISHVE-ESDSGVWNCVANNSEGQD--KMQLFIQ 307
              + L+I +++   D G + C A NS G       L ++
Sbjct: 150 ENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 85.3 bits (211), Expect = 8e-20
 Identities = 18/142 (12%), Positives = 40/142 (28%), Gaps = 29/142 (20%)

Query: 230 RILNVKKDESVILPCSAQGNPLP--TIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSG 287
            ++       V L C+   +        W K    +  + +         I+     DSG
Sbjct: 11  EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNAS-NMEYRINKPRAEDSG 69

Query: 288 VWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILN 347
            ++CV +                      ++  + +           +A  +    R  N
Sbjct: 70  EYHCVYHFVSAPK----------------ANATIEVK----------AAPDITGHKRSEN 103

Query: 348 VKKDESVILPCSAQGNPLPTIK 369
             + +  ++ C + G P P   
Sbjct: 104 KNEGQDAMMYCKSVGYPHPEWM 125

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 76.8 bits (189), Expect = 8e-17
 Identities = 30/175 (17%), Positives = 62/175 (35%), Gaps = 33/175 (18%)

Query: 12  SIEMSPSGQVVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVL----RRNSDEVLVLDR 65
            I  S    ++ D    + L C ++     L  +  W K+G+ L    +  S+    +++
Sbjct: 5   RIVTSEE-VIIRDSLLPVTLQCNLTSSSHTLMYSY-WTKNGVELTATRKNASNMEYRINK 62

Query: 66  VQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVS---- 121
            + ED+G Y C V     + + +A + +               + G    ++C+      
Sbjct: 63  PRAEDSGEYHC-VYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPH 121

Query: 122 PKRLSSAKAWLKDG---------------LVLRRNSDEVLVLDRVQREDAGMYQC 161
           P        W K                 ++ + N  E+ +++    ED G Y+C
Sbjct: 122 P-----EWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYEC 171

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 93.4 bits (232), Expect = 2e-22
 Identities = 30/146 (20%), Positives = 46/146 (31%), Gaps = 27/146 (18%)

Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GSSLSISHVEES 284
           R+  V    +V   C A GNP+PT++W K     ++  RI          SL +  V  S
Sbjct: 27  RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS 86

Query: 285 DSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH- 343
           D G + CV  N  G                   +  L + +      R      +     
Sbjct: 87  DKGNYTCVVENEYGSIN---------------HTYHLDVVE------RSRHRPILQAGLP 125

Query: 344 RILNVKKDESVILPCSAQGNPLPTIK 369
              +      V   C    +  P I+
Sbjct: 126 ANASTVVGGDVEFVCKVYSDAQPHIQ 151

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 81.9 bits (202), Expect = 3e-18
 Identities = 42/250 (16%), Positives = 69/250 (27%), Gaps = 71/250 (28%)

Query: 79  SADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDG 135
              ++S    A      E +E        V   + ++  C     P   +     WLK+G
Sbjct: 5   FVSENSNNKRAPYWTNTEKME---KRLHAVPAANTVKFRCPAGGNPMPTMR----WLKNG 57

Query: 136 LVLR----------RNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESD 185
              +          RN    L+++ V   D G Y C +E+    +  +  L +       
Sbjct: 58  KEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV-VERSRH 116

Query: 186 RYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCS 245
           R         N        S   G                              V   C 
Sbjct: 117 RPILQAGLPAN-------ASTVVG----------------------------GDVEFVCK 141

Query: 246 AQGNPLPTIKWYKQDS--------------PVEESDRIQRIG-SSLSISHVEESDSGVWN 290
              +  P I+W K                  V +   I       L++ +V E+D+G + 
Sbjct: 142 VYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYI 201

Query: 291 CVANNSEGQD 300
           C  +N  GQ 
Sbjct: 202 CKVSNYIGQA 211

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 79.2 bits (195), Expect = 3e-17
 Identities = 40/191 (20%), Positives = 59/191 (30%), Gaps = 52/191 (27%)

Query: 14  EMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLR----------RNSDEV 60
           +M      V    + ++  C     P   +     WLK+G   +          RN    
Sbjct: 23  KMEKRLHAV-PAANTVKFRCPAGGNPMPTMR----WLKNGKEFKQEHRIGGYKVRNQHWS 77

Query: 61  LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGE------LVEIASSNQVVVDVGHRI 114
           L+++ V   D G Y C V  +  S   +  + +         L     +N   V VG  +
Sbjct: 78  LIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTV-VGGDV 136

Query: 115 ELHCRVSPKRLSSAKA---WLKDGLVLRRNS--------------------DEVLVLDRV 151
           E  C+V     S A+    W+K                              EVL L  V
Sbjct: 137 EFVCKVY----SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNV 192

Query: 152 QREDAGMYQCH 162
              DAG Y C 
Sbjct: 193 TEADAGEYICK 203

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 45.7 bits (108), Expect = 7e-06
 Identities = 24/95 (25%), Positives = 29/95 (30%), Gaps = 27/95 (28%)

Query: 21  VVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNS-------------------- 57
               VG  +E  C+V     S A+    W+K                             
Sbjct: 128 ASTVVGGDVEFVCKVY----SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSN 183

Query: 58  DEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
            EVL L  V   DAG Y C VS     A  SA + 
Sbjct: 184 AEVLALFNVTEADAGEYICKVSNYIGQANQSAWLT 218

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 96.9 bits (240), Expect = 3e-22
 Identities = 44/309 (14%), Positives = 85/309 (27%), Gaps = 70/309 (22%)

Query: 17  PSGQVVVDVGHRIELHCRVSPKRLSSAKA--WLKDGLVLRR------NSDEVLVLDRVQR 68
                V++V  +  + C +      S            L        +S        V  
Sbjct: 194 LVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTA 253

Query: 69  EDAGMYQ--CHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPK--- 123
           ED G  +  C V   + S +    V +           +  V  G  + + C   P+   
Sbjct: 254 EDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKV 313

Query: 124 RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDE 183
            L+     +    +  R     L+L     ++                            
Sbjct: 314 TLN----GVPAQPLGPRAQ---LLLKATPEDNGR-------------------------- 340

Query: 184 SDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILN--VKKDESVI 241
                S+ C    ++ G  +       L      R+L   ++ E+    N    ++    
Sbjct: 341 -----SFSCSATLEVAGQLIHKNQTREL------RVLYGPRLDERDCPGNWTWPENSQQT 389

Query: 242 LPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD- 300
             C A GNPLP +K  K  +                   V     G + C A +++G+  
Sbjct: 390 PMCQAWGNPLPELKCLKDGTFPLPIGESVT---------VTRDLEGTYLCRARSTQGEVT 440

Query: 301 -KMQLFIQY 308
            ++ + +  
Sbjct: 441 REVTVNVLS 449

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 94.2 bits (233), Expect = 2e-21
 Identities = 52/371 (14%), Positives = 99/371 (26%), Gaps = 70/371 (18%)

Query: 13  IEMSPSGQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE 69
             +SPS +V++  G  + + C  S   P  L       K  L+L  N+ +V  L  VQ  
Sbjct: 2   TSVSPS-KVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNVQ-- 58

Query: 70  DAGMYQCHVSADDDSAQMSAQVILGG--ELVEIASSNQVVVDVGHRIELHCRVS---PKR 124
           +     C+ +  D  +     + +    E VE+ +       VG  + L C+V    P+ 
Sbjct: 59  EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVEL-APLPSWQPVGKNLTLRCQVEGGAPRA 117

Query: 125 LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184
             +    L+    L+R                               +     +    + 
Sbjct: 118 NLTVV-LLRGEKELKREPAV------------------------GEPAEVTTTVLVRRDH 152

Query: 185 DRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPC 244
               ++ CR    L    L  +     +  + +  +  A   +      ++ D    + C
Sbjct: 153 HG-ANFSCRTELDLRPQGL-ELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVC 210

Query: 245 SAQGN---PLPTIKWYKQDSPVE-ESDRIQRIGSSLSISHVEESDSGVWN--CVANNSEG 298
           S  G        +     D  +           S+ +   V   D G     C       
Sbjct: 211 SLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQ 270

Query: 299 QDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPC 358
             +    +                          + S            V +   V + C
Sbjct: 271 SQETLQTV-------------------------TIYSFPAPNVILTKPEVSEGTEVTVKC 305

Query: 359 SAQGNPLPTIK 369
            A      T+ 
Sbjct: 306 EAHPRAKVTLN 316

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 85.3 bits (210), Expect = 2e-18
 Identities = 52/380 (13%), Positives = 101/380 (26%), Gaps = 86/380 (22%)

Query: 12  SIEMSPSGQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSD-----EVLVL 63
            +E++P       VG  + L C+V    P+   +    L+    L+R        EV   
Sbjct: 88  RVELAPLPSWQ-PVGKNLTLRCQVEGGAPRANLTVV-LLRGEKELKREPAVGEPAEVTTT 145

Query: 64  DRVQRED-AGMYQCHVSADDDSA-----QMSAQVILGGELVEIASSNQVV----VDVGHR 113
             V+R+     + C    D         + ++        V  A+  Q+V    ++V  +
Sbjct: 146 VLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQ 205

Query: 114 IELHCRVSPKRLSSAKA--WLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML 171
             + C +      S            L                              +  
Sbjct: 206 GTVVCSLDGLFPVSEAQVHLALGDQRLNPTVT-----------------------YGNDS 242

Query: 172 SSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRI 231
            S +  +    E +  +   C           + +        +   + S          
Sbjct: 243 FSAKASVSVTAEDEGTQRLTCA----------VILGNQSQETLQTVTIYSFPAPNVILTK 292

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNC 291
             V +   V + C A      T+                   + L +    E +   ++C
Sbjct: 293 PEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGP--------RAQLLLKATPEDNGRSFSC 344

Query: 292 VANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILN--VK 349
            A                            +IH+   +  R+L   ++ E+    N    
Sbjct: 345 SATLEVAGQ---------------------LIHKNQTRELRVLYGPRLDERDCPGNWTWP 383

Query: 350 KDESVILPCSAQGNPLPTIK 369
           ++      C A GNPLP +K
Sbjct: 384 ENSQQTPMCQAWGNPLPELK 403

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 68.0 bits (165), Expect = 1e-12
 Identities = 25/173 (14%), Positives = 49/173 (28%), Gaps = 28/173 (16%)

Query: 2   QLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPK---RLSSAKAWLKDGLVLRRNSD 58
              + + S  +  +  + +  V  G  + + C   P+    L+     +    +  R   
Sbjct: 275 LQTVTIYSFPAPNVILT-KPEVSEGTEVTVKCEAHPRAKVTLN----GVPAQPLGPRAQ- 328

Query: 59  EVLVLDRVQREDAGMYQCHVS------ADDDSAQMSAQVILGGELVEIASSNQVVVDVGH 112
             L+L     ++   + C  +          +     +V+ G  L E             
Sbjct: 329 --LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENS 386

Query: 113 RIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
           +    C+        L      LKDG         +     V R+  G Y C 
Sbjct: 387 QQTPMCQAWGNPLPELK----CLKDG----TFPLPIGESVTVTRDLEGTYLCR 431

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 58.7 bits (141), Expect = 1e-09
 Identities = 32/282 (11%), Positives = 70/282 (24%), Gaps = 67/282 (23%)

Query: 98  VEIASSNQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE 154
             + S ++V++  G  + + C  S   P  L       K  L+L  N+ +V  L  VQ  
Sbjct: 2   TSV-SPSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNVQ-- 58

Query: 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214
           +     C+         +   L ++   E                               
Sbjct: 59  EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLP----------------------- 95

Query: 215 ENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLP--TIKWYKQDSPVE-ESDRIQ 270
                                  +++ L C  +G  P    T+   + +  ++ E    +
Sbjct: 96  -----------------SWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGE 138

Query: 271 RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKN 330
               + ++    +     ++C                   G     ++      Q     
Sbjct: 139 PAEVTTTVLVRRDHHGANFSCRTELDLR----------PQGLELFENTSAPYQLQTFVLP 188

Query: 331 KRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLPTIKYR 371
                            ++ D    + CS  G  P+   +  
Sbjct: 189 ATPPQLVSPR------VLEVDTQGTVVCSLDGLFPVSEAQVH 224

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 43.7 bits (102), Expect = 6e-05
 Identities = 14/83 (16%), Positives = 19/83 (22%), Gaps = 11/83 (13%)

Query: 13  IEMSPSGQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE 69
            E    G        +    C+        L      LKDG         +     V R+
Sbjct: 372 DERDCPGNWTWPENSQQTPMCQAWGNPLPELK----CLKDG----TFPLPIGESVTVTRD 423

Query: 70  DAGMYQCHVSADDDSAQMSAQVI 92
             G Y C   +          V 
Sbjct: 424 LEGTYLCRARSTQGEVTREVTVN 446

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 91.0 bits (226), Expect = 6e-22
 Identities = 35/146 (23%), Positives = 51/146 (34%), Gaps = 33/146 (22%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI------GSSLSISHVEESD 285
           L V + + V L CS +G   P I+W K  + V+  D++            LS+  VE SD
Sbjct: 12  LTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSD 71

Query: 286 SGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH-R 344
           +G + C   +    +  Q                 L +  V             F    +
Sbjct: 72  AGRYWCQVEDGGETEISQ--------------PVWLTVEGVPF-----------FTVEPK 106

Query: 345 ILNVKKDESVILPCSAQGNPLP-TIK 369
            L V  +    L C A G P P TI 
Sbjct: 107 DLAVPPNAPFQLSCEAVGPPEPVTIV 132

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 89.1 bits (221), Expect = 3e-21
 Identities = 36/176 (20%), Positives = 61/176 (34%), Gaps = 36/176 (20%)

Query: 9   SSLSIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE------ 59
           + L +  +P  ++ V  G  ++L+C V    +  +     W+KDG V++           
Sbjct: 1   AGLKLMGAPV-KLTVSQGQPVKLNCSVEGMEEPDIQ----WVKDGAVVQNLDQLYIPVSE 55

Query: 60  -----VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASS-----NQVVVD 109
                 L L  V+R DAG Y C V    ++   S  V L    VE           + V 
Sbjct: 56  QHWIGFLSLKSVERSDAGRYWCQVEDGGETEI-SQPVWL---TVEGVPFFTVEPKDLAVP 111

Query: 110 VGHRIELHCRVS----PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 161
                +L C       P  +     W +    +   +    VL+      + M+ C
Sbjct: 112 PNAPFQLSCEAVGPPEPVTIV----WWRGTTKIGGPAPSPSVLNVTGVTQSTMFSC 163

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 84.8 bits (210), Expect = 9e-20
 Identities = 43/210 (20%), Positives = 70/210 (33%), Gaps = 64/210 (30%)

Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE-----------VLVLDRV 151
           + V  G  ++L+C V    +  +     W+KDG V++                 L L  V
Sbjct: 12  LTVSQGQPVKLNCSVEGMEEPDIQ----WVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSV 67

Query: 152 QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRL 211
           +R DAG Y C +EDG          I   V                      L+V     
Sbjct: 68  ERSDAGRYWCQVEDG------GETEISQPVW---------------------LTVE---- 96

Query: 212 SLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP-TIKWYKQDSPVEESDRIQ 270
                           + + L V  +    L C A G P P TI W++  + +       
Sbjct: 97  ---------GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-- 145

Query: 271 RIGSSLSISHVEESDSGVWNCVANNSEGQD 300
              S   ++    + S +++C A+N +G  
Sbjct: 146 ---SPSVLNVTGVTQSTMFSCEAHNLKGLA 172

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 54.8 bits (132), Expect = 4e-09
 Identities = 11/79 (13%), Positives = 23/79 (29%), Gaps = 9/79 (11%)

Query: 5   IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS----PKRLSSAKAWLKDGLVLRRNSDEV 60
           + V+      + P   + V      +L C       P  +     W +    +   +   
Sbjct: 93  LTVEGVPFFTVEPK-DLAVPPNAPFQLSCEAVGPPEPVTIV----WWRGTTKIGGPAPSP 147

Query: 61  LVLDRVQREDAGMYQCHVS 79
            VL+      + M+ C   
Sbjct: 148 SVLNVTGVTQSTMFSCEAH 166

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 89.9 bits (223), Expect = 1e-21
 Identities = 22/150 (14%), Positives = 51/150 (34%), Gaps = 6/150 (4%)

Query: 13  IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAG 72
           +++ P    V+     + L C+ +    S +  W  +G ++  ++       +    D+G
Sbjct: 7   LKLEPPWINVL-QEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQP-SYRFKANNNDSG 64

Query: 73  MYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWL 132
            Y C       S  +   V+       +  +  +    G  I L C     +      + 
Sbjct: 65  EYTCQTGQTSLSDPVHLTVL---FEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFF 121

Query: 133 KDGLVLR-RNSDEVLVLDRVQREDAGMYQC 161
           ++G   +  + D    + +     +G Y C
Sbjct: 122 QNGKSQKFSHLDPTFSIPQANHSHSGDYHC 151

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 76.0 bits (187), Expect = 1e-16
 Identities = 29/203 (14%), Positives = 59/203 (29%), Gaps = 50/203 (24%)

Query: 98  VEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAG 157
           V       + V     + L C+ +    S +  W  +G ++  ++       +    D+G
Sbjct: 6   VLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQP-SYRFKANNNDSG 64

Query: 158 MYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENK 217
            Y C                  Q  ++                   L+V    L L    
Sbjct: 65  EYTC------------------QTGQTSLSDPVH------------LTVLFEWLVLQTPH 94

Query: 218 RLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PLPTIKWYKQDSPVEESDRIQRIGSSL 276
                            ++ E+++L C +  + PL  + +++     + S        + 
Sbjct: 95  L--------------EFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHL----DPTF 136

Query: 277 SISHVEESDSGVWNCVANNSEGQ 299
           SI     S SG ++C  N     
Sbjct: 137 SIPQANHSHSGDYHCTGNIGYTL 159

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 59.1 bits (143), Expect = 9e-11
 Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 36/140 (25%)

Query: 233 NVKKDESVILPCSAQGNPLP-TIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNC 291
           NV +++SV L C    +P   +I+W+   + +    +               +DSG + C
Sbjct: 15  NVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ------PSYRFKANNNDSGEYTC 68

Query: 292 VANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKD 351
               +   D + L + +            L++                         ++ 
Sbjct: 69  QTGQTSLSDPVHLTVLFEW----------LVLQTPHL------------------EFQEG 100

Query: 352 ESVILPCSAQGNPLPTIKYR 371
           E+++L C +  +  P +K  
Sbjct: 101 ETIMLRCHSWKDK-PLVKVT 119

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 52.9 bits (127), Expect = 1e-08
 Identities = 15/107 (14%), Positives = 31/107 (28%), Gaps = 19/107 (17%)

Query: 5   IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR-RNSDEVLVL 63
           + V     +  +P  +     G  I L C     +      + ++G   +  + D    +
Sbjct: 81  LTVLFEWLVLQTPHLEFQE--GETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSI 138

Query: 64  DRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDV 110
            +     +G Y C           +  +          SS  V + V
Sbjct: 139 PQANHSHSGDYHC-----------TGNIGYTLF-----SSKPVTITV 169

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 91.5 bits (227), Expect = 1e-21
 Identities = 31/145 (21%), Positives = 44/145 (30%), Gaps = 25/145 (17%)

Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GSSLSISHVEES 284
           ++L V    +V   C A GNP P+I W K         RI  I       SL +  V  S
Sbjct: 23  KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPS 82

Query: 285 DSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHR 344
           D G + CV  N  G  +                +  L + +       L +         
Sbjct: 83  DRGNYTCVVENKFGSIR---------------QTYTLDVLERSPHRPILQA-----GLPA 122

Query: 345 ILNVKKDESVILPCSAQGNPLPTIK 369
                    V   C    +  P I+
Sbjct: 123 NQTAVLGSDVEFHCKVYSDAQPHIQ 147

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 80.8 bits (199), Expect = 8e-18
 Identities = 38/181 (20%), Positives = 59/181 (32%), Gaps = 44/181 (24%)

Query: 21  VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLR----------RNSDEVLVLDRVQ 67
           + V   + +   C  +  P   +S    WLK+G   R          R+    LV++ V 
Sbjct: 25  LAVPAANTVRFRCPAAGNPTPSIS----WLKNGREFRGEHRIGGIKLRHQQWSLVMESVV 80

Query: 68  REDAGMYQCHVSADDDSAQMSAQVILGGE------LVEIASSNQVVVDVGHRIELHCRVS 121
             D G Y C V     S + +  + +         L     +NQ  V +G  +E HC+V 
Sbjct: 81  PSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAV-LGSDVEFHCKVY 139

Query: 122 --PK------------------RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 161
              +                    +     LK  +     +D  L L  V   D G Y C
Sbjct: 140 SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLC 199

Query: 162 H 162
            
Sbjct: 200 R 200

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 80.0 bits (197), Expect = 1e-17
 Identities = 40/235 (17%), Positives = 65/235 (27%), Gaps = 71/235 (30%)

Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLR----------RNSDEVLVLDRVQ 152
           + V   + +   C  +  P   +S    WLK+G   R          R+    LV++ V 
Sbjct: 25  LAVPAANTVRFRCPAAGNPTPSIS----WLKNGREFRGEHRIGGIKLRHQQWSLVMESVV 80

Query: 153 REDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLS 212
             D G Y C +E+    +  +  L    V E   +R     G+         +   G   
Sbjct: 81  PSDRGNYTCVVENKFGSIRQTYTL---DVLERSPHRPILQAGLPANQ-----TAVLG--- 129

Query: 213 LTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSP---------- 262
                                      V   C    +  P I+W K              
Sbjct: 130 -------------------------SDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGT 164

Query: 263 -----VEESDRIQRIG-SSLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQYA 309
                ++            L +++V E D G + C A N  G       L +   
Sbjct: 165 PYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGP 219

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 24/121 (19%)

Query: 21  VVVDVGHRIELHCRVS--PK------------------RLSSAKAWLKDGLVLRRNSDEV 60
               +G  +E HC+V    +                    +     LK  +     +D  
Sbjct: 124 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVR 183

Query: 61  LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRV 120
           L L  V   D G Y C  +     A+ +  +     +    ++ + +V+      +H   
Sbjct: 184 LRLANVSERDGGEYLCRATNFIGVAEKAFWLS----VHGPRAAEEELVEADEAGSVHHHH 239

Query: 121 S 121
            
Sbjct: 240 H 240

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 89.5 bits (222), Expect = 2e-21
 Identities = 27/167 (16%), Positives = 61/167 (36%), Gaps = 8/167 (4%)

Query: 8   KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQ 67
           K+ + +   P    V+     + L C+ +     ++  W  +  ++   +     +D   
Sbjct: 7   KAVVFL--EPQWYSVL-EKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASS-YFIDAAT 62

Query: 68  REDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSS 127
             D+G Y+C  +    S  +  +V +G  L++       V      I L C         
Sbjct: 63  VNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRW---VFKEEDPIHLRCHSWKNTALH 119

Query: 128 AKAWLKDGLVLR-RNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS 173
              +L++G   +  + +    + +   +D+G Y C    G  ++ S 
Sbjct: 120 KVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSE 166

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 75.3 bits (185), Expect = 2e-16
 Identities = 29/212 (13%), Positives = 58/212 (27%), Gaps = 53/212 (25%)

Query: 102 SSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 161
                 V     + L C+ +     ++  W  +  ++   +     +D     D+G Y+C
Sbjct: 13  EPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASS-YFIDAATVNDSGEYRC 71

Query: 162 HIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLS 221
                                 SD  +               L V+ G L L   + +  
Sbjct: 72  QTNLSTL---------------SDPVQ---------------LEVHIGWLLLQAPRWV-- 99

Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGN-PLPTIKWYKQDSPVEESDRIQRIGSSLSISH 280
                        K+++ + L C +  N  L  + + +     +         S   I  
Sbjct: 100 ------------FKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHH----NSDFHIPK 143

Query: 281 VEESDSGVWNCVANNSEGQ---DKMQLFIQYA 309
               DSG + C           + + + I  A
Sbjct: 144 ATLKDSGSYFCRGLVGSKNVSSETVNITITQA 175

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 89.6 bits (222), Expect = 2e-21
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 6/163 (3%)

Query: 12  SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDA 71
            + ++P    +   G  + L C  +     S+  W  +G +    +   L +   + ED+
Sbjct: 6   KVSLNPPWNRIF-KGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS-LNIVNAKFEDS 63

Query: 72  GMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAW 131
           G Y+C     ++S  +  +V     L++ ++    VV  G  + L C            +
Sbjct: 64  GEYKCQHQQVNESEPVYLEVFSDWLLLQASAE---VVMEGQPLFLRCHGWRNWDVYKVIY 120

Query: 132 LKDGLVLR-RNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS 173
            KDG  L+    +  + +     ED+G Y C  +  +    S 
Sbjct: 121 YKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESE 163

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 71.9 bits (176), Expect = 3e-15
 Identities = 31/214 (14%), Positives = 65/214 (30%), Gaps = 53/214 (24%)

Query: 100 IASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMY 159
             +     +  G  + L C  +     S+  W  +G +    +   L +   + ED+G Y
Sbjct: 8   SLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS-LNIVNAKFEDSGEY 66

Query: 160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRL 219
           +C  +                 +ES+                  L V    L L  +   
Sbjct: 67  KCQHQQV---------------NESEPVY---------------LEVFSDWLLLQASAE- 95

Query: 220 LSAAKMFEKHRILNVKKDESVILPCSAQGN-PLPTIKWYKQDSPVEESDRIQRIGSSLSI 278
                         V + + + L C    N  +  + +YK    ++          ++SI
Sbjct: 96  -------------VVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE----NHNISI 138

Query: 279 SHVEESDSGVWNCVANNSEGQ---DKMQLFIQYA 309
           ++    DSG + C     +     + + + +  A
Sbjct: 139 TNATVEDSGTYYCTGKVWQLDYESEPLNITVIKA 172

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 59.1 bits (143), Expect = 1e-10
 Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 36/140 (25%)

Query: 233 NVKKDESVILPCSAQGNPLP-TIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNC 291
            + K E+V L C+        + KW+   S  EE++      SSL+I + +  DSG + C
Sbjct: 15  RIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN------SSLNIVNAKFEDSGEYKC 68

Query: 292 VANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKD 351
                   + + L +              L++    E                   V + 
Sbjct: 69  QHQQVNESEPVYLEVFSD----------WLLLQASAE------------------VVMEG 100

Query: 352 ESVILPCSAQGNPLPTIKYR 371
           + + L C    N     K  
Sbjct: 101 QPLFLRCHGWRNW-DVYKVI 119

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 92.2 bits (228), Expect = 2e-21
 Identities = 51/316 (16%), Positives = 93/316 (29%), Gaps = 62/316 (19%)

Query: 12  SIEMSPSGQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQR 68
           ++ +  + +  +  G    L   V+   P   +    W KD      N+   L +     
Sbjct: 4   TVSIQSNKRCFL-AGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHE-NNTATLTVADATS 61

Query: 69  EDAGMYQCHVSADDDSAQMSAQVILGGEL---VEIASSNQVVVDVGHRIELHCRVS---- 121
           E+AG Y+  V   D    + ++V L  E    V I       V     +ELH  V     
Sbjct: 62  ENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGG 121

Query: 122 ---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELII 178
                      +W K   V+  ++ + + +     +  G+Y   +        +S    I
Sbjct: 122 KTPADNYELHYSWSKGEDVI--DTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKI 179

Query: 179 HQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDE 238
                +          V++    S        +SL                         
Sbjct: 180 MLATMN----------VDQDVVESKTVALGNEISLNYVV--------------------- 208

Query: 239 SVILPCSAQGNPLPTIK--WYKQ-DSPVEESDRIQRIGSS-----------LSISHVEES 284
           S  +   + G P  TIK  WY Q +  +  +     +G +           L        
Sbjct: 209 SEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYD 268

Query: 285 DSGVWNCVANNSEGQD 300
           D+  + CVA   +  +
Sbjct: 269 DTAKFWCVAKLYQQIE 284

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 65.2 bits (158), Expect = 4e-12
 Identities = 37/284 (13%), Positives = 74/284 (26%), Gaps = 73/284 (25%)

Query: 98  VEIASSNQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE 154
           V I S+ +  +  G    L   V+   P   +    W KD      N+   L +     E
Sbjct: 5   VSIQSNKRCFL-AGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHE-NNTATLTVADATSE 62

Query: 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214
           +AG Y+  ++D         E+ +                + +      ++  +      
Sbjct: 63  NAGSYKVTVQDTDTMTSVESEVFL----------------MEEAELIVNITEPQHFY--- 103

Query: 215 ENKRLLSAAKMFEKHRILNVKKDESVILPCSAQ---GNPLP-----TIKWYKQDSPVEES 266
                              V     V L  + +   G            W K +  ++ +
Sbjct: 104 -------------------VSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTT 144

Query: 267 DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQV 326
                    ++I       +GV+                           +S    I   
Sbjct: 145 -------QDITIQEFTADKNGVYTVKVWGESEDSA---------------ASASTKIMLA 182

Query: 327 DEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKY 370
                + +  +K       +++    S  +   + G P  TIKY
Sbjct: 183 TMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKY 226

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 88.7 bits (220), Expect = 5e-21
 Identities = 37/208 (17%), Positives = 70/208 (33%), Gaps = 36/208 (17%)

Query: 98  VEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRNSDEVLVLDRVQREDA 156
           V+I  S   +  VG      C+V+        +W   +G  L  N   + V+        
Sbjct: 5   VDIVPSQGEIS-VGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVV-------- 55

Query: 157 GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTEN 216
                      ++   S  L I+  +  D    Y+C    +    S  +VN     +   
Sbjct: 56  -----------WNDDDSSTLTIYNANIDDAGI-YKCVVTAEDGTQSEATVN-----VK-- 96

Query: 217 KRLLSAAKMFEKH-RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPV--EESDRIQRIG 273
              +    MF+        K+ E  ++ C    +  PTI W  +   V  ++  R   + 
Sbjct: 97  ---IFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS 153

Query: 274 S-SLSISHVEESDSGVWNCVANNSEGQD 300
           +  L I  ++++D G + C        +
Sbjct: 154 NNYLQIRGIKKTDEGTYRCEGRILARGE 181

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 83.3 bits (206), Expect = 4e-19
 Identities = 25/145 (17%), Positives = 47/145 (32%), Gaps = 34/145 (23%)

Query: 234 VKKDESVILPCSAQGNPL-PTIKWYKQDS-PVEESD-RIQRI-----GSSLSISHVEESD 285
           +   ES    C   G+     I W+  +   +  +  RI  +      S+L+I +    D
Sbjct: 14  ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDD 73

Query: 286 SGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH-R 344
           +G++ CV    +G                  ++  + I               MF+    
Sbjct: 74  AGIYKCVVTAEDGTQSE--------------ATVNVKIF-----------QKLMFKNAPT 108

Query: 345 ILNVKKDESVILPCSAQGNPLPTIK 369
               K+ E  ++ C    +  PTI 
Sbjct: 109 PQEFKEGEDAVIVCDVVSSLPPTII 133

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 79.1 bits (195), Expect = 1e-17
 Identities = 33/175 (18%), Positives = 67/175 (38%), Gaps = 29/175 (16%)

Query: 11  LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG------------LVLRRNSD 58
           L +++ PS Q  + VG      C+V+        +W                +V   +  
Sbjct: 3   LQVDIVPS-QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61

Query: 59  EVLVLDRVQREDAGMYQCHVS-ADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELH 117
             L +     +DAG+Y+C V+  D   ++ +  V +  +L+   +        G    + 
Sbjct: 62  STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIV 121

Query: 118 CRV--SPK-RLSSAKAWLKDG--LVLRRN------SDEVLVLDRVQREDAGMYQC 161
           C V  S    +     W   G  ++L+++      S+  L +  +++ D G Y+C
Sbjct: 122 CDVVSSLPPTII----WKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRC 172

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 52.1 bits (125), Expect = 3e-08
 Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 18/101 (17%)

Query: 5   IQVKSSLSIEMSPSGQVVVDVGHRIELHCRV--SPK-RLSSAKAWLKDG--LVLRRN--- 56
           +++   L  + +P+ Q     G    + C V  S    +     W   G  ++L+++   
Sbjct: 95  VKIFQKLMFKNAPTPQEFK-EGEDAVIVCDVVSSLPPTII----WKHKGRDVILKKDVRF 149

Query: 57  ---SDEVLVLDRVQREDAGMYQC--HVSADDDSAQMSAQVI 92
              S+  L +  +++ D G Y+C   + A  +      QVI
Sbjct: 150 IVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 88.1 bits (218), Expect = 1e-20
 Identities = 30/213 (14%), Positives = 73/213 (34%), Gaps = 37/213 (17%)

Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV-----------LVLDRVQRE 154
           V +    ++    +      ++   ++ +   +                  + ++++Q E
Sbjct: 12  VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDE 71

Query: 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214
           D G Y   ++DGK    S+  L+     +  +   +Q +   +                 
Sbjct: 72  DEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRK---------------- 115

Query: 215 ENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT-IKWYKQDSPVEESDRIQRIG 273
                      F ++    V  + +V+L C        T I WYK +  +   ++     
Sbjct: 116 -------QGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD 168

Query: 274 --SSLSISHVEESDSGVWNCVANNSEGQDKMQL 304
              +L I+   + D+G++  +  +  G+DK +L
Sbjct: 169 GICTLLITEFSKKDAGIYEVILKDDRGKDKSRL 201

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 78.4 bits (193), Expect = 3e-17
 Identities = 11/140 (7%), Positives = 43/140 (30%), Gaps = 13/140 (9%)

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS------SLSISHVEESDSG 287
           ++K +      + + +    + +   +  + E  + +           + +  +++ D G
Sbjct: 15  LEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEG 74

Query: 288 VWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILN 347
            +     + +  +   +               +L      ++ + +      F ++    
Sbjct: 75  TYTFQLQDGKATNHSTV-------VLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWE 127

Query: 348 VKKDESVILPCSAQGNPLPT 367
           V  + +V+L C        T
Sbjct: 128 VTGECNVLLKCKVANIKKET 147

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 63.0 bits (153), Expect = 8e-12
 Identities = 21/194 (10%), Positives = 62/194 (31%), Gaps = 36/194 (18%)

Query: 21  VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV-----------LVLDRVQRE 69
           V +    ++    +      ++   ++ +   +                  + ++++Q E
Sbjct: 12  VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDE 71

Query: 70  DAGMYQCHVSADDDSAQMSAQVI------------------LGGELVEIASSNQVVVDVG 111
           D G Y   +     +   +  ++                  +  +           V   
Sbjct: 72  DEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGE 131

Query: 112 HRIELHCRVSPKRLSSAKAWLKDGLVLR-------RNSDEVLVLDRVQREDAGMYQCHIE 164
             + L C+V+  +  +   W KD   +        ++    L++    ++DAG+Y+  ++
Sbjct: 132 CNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILK 191

Query: 165 DGKYHMLSSGELII 178
           D +    S  +L+ 
Sbjct: 192 DDRGKDKSRLKLVD 205

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 49.2 bits (117), Expect = 4e-07
 Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 7/80 (8%)

Query: 20  QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR-------RNSDEVLVLDRVQREDAG 72
              V     + L C+V+  +  +   W KD   +        ++    L++    ++DAG
Sbjct: 125 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAG 184

Query: 73  MYQCHVSADDDSAQMSAQVI 92
           +Y+  +  D    +   +++
Sbjct: 185 IYEVILKDDRGKDKSRLKLV 204

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 86.1 bits (213), Expect = 5e-20
 Identities = 34/200 (17%), Positives = 63/200 (31%), Gaps = 36/200 (18%)

Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED 165
           +    G    L C++  +       WL+DG +L         +               ED
Sbjct: 12  ITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVP------------LGED 59

Query: 166 GKYHMLSSGELIIHQVDESDRYRSYQCRGVNKL----TGASLLSVNRGRLSLTENKRLLS 221
            +   +   +L I  +  SD  + YQC          +    + +               
Sbjct: 60  EQDDWIVVSQLRITSLQLSDTGQ-YQCLVFLGHQTFVSQPGYVGLE-------------- 104

Query: 222 AAKMFEKH-RILNVKKDESVILPCSAQGNPLPT-IKWYKQDSPVEESDRIQRIGSSLSIS 279
               F +      V  +    L C AQG P P  + W +   P+  +        SL + 
Sbjct: 105 GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGP-QRSLHVP 163

Query: 280 HVEESDSGVWNCVANNSEGQ 299
            +    +  ++C A+N++G 
Sbjct: 164 GLN--KTSSFSCEAHNAKGV 181

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 76.1 bits (187), Expect = 1e-16
 Identities = 30/169 (17%), Positives = 44/169 (26%), Gaps = 29/169 (17%)

Query: 21  VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE------------------VLV 62
           +    G    L C++  +       WL+DG +L                         L 
Sbjct: 12  ITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLR 71

Query: 63  LDRVQREDAGMYQCHVSADDDSAQ-MSAQVILGGELVEIASSNQVVVDVGHRIELHCRVS 121
           +  +Q  D G YQC V     +       V L G    +       V       L C+  
Sbjct: 72  ITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQ 131

Query: 122 ----PKRLSSAKAWLKDGLVLRRNSDEV--LVLDRVQREDAGMYQCHIE 164
               P  L     WL+D + L           L          + C   
Sbjct: 132 GPPEPVDLL----WLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAH 176

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 74.6 bits (183), Expect = 7e-16
 Identities = 28/150 (18%), Positives = 44/150 (29%), Gaps = 42/150 (28%)

Query: 234 VKKDESVILPCSAQ--GNPLPTIKWYKQDSPVEESDRIQRI-------------GSSLSI 278
             +  +  L C  Q  G P P + W +    +E +D  Q                S L I
Sbjct: 14  GARGLTGTLRCQLQVQGEP-PEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRI 72

Query: 279 SHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAK 338
           + ++ SD+G + C+          Q               G + +               
Sbjct: 73  TSLQLSDTGQYQCLVFLGHQTFVSQ--------------PGYVGLE-----------GLP 107

Query: 339 MFEKH-RILNVKKDESVILPCSAQGNPLPT 367
            F +      V  +    L C AQG P P 
Sbjct: 108 YFLEEPEDRTVAANTPFNLSCQAQGPPEPV 137

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 83.7 bits (207), Expect = 5e-20
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--GSSLSISHVEESDSGVWNC 291
           V  D + +L C A G+P+PTI W K    V   D   +      L I + +  D+G + C
Sbjct: 20  VAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTC 79

Query: 292 VANNSEGQD 300
           +A+   G+ 
Sbjct: 80  IASTPSGEA 88

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 20/90 (22%), Positives = 29/90 (32%), Gaps = 15/90 (16%)

Query: 12 SIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLD---- 64
           I   P     V V     L C  +  P   +     W KDG+++      +  L+    
Sbjct: 10 VIRQGPV-NQTVAVDGTFVLSCVATGSPVPTIL----WRKDGVLVSTQDSRIKQLENGVL 64

Query: 65 ---RVQREDAGMYQCHVSADDDSAQMSAQV 91
               +  D G Y C  S     A  SA +
Sbjct: 65 QIRYAKLGDTGRYTCIASTPSGEATWSAYI 94

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 14/67 (20%)

Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLD-------RVQRED 155
             V V     L C  +  P   +     W KDG+++      +  L+         +  D
Sbjct: 18  QTVAVDGTFVLSCVATGSPVPTIL----WRKDGVLVSTQDSRIKQLENGVLQIRYAKLGD 73

Query: 156 AGMYQCH 162
            G Y C 
Sbjct: 74  TGRYTCI 80

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 85.5 bits (211), Expect = 5e-20
 Identities = 37/220 (16%), Positives = 74/220 (33%), Gaps = 63/220 (28%)

Query: 107 VVDVGHRIELHCRV--SPKRLSSAKAWLKDGLVLR--RNSDEVLVLDRVQREDAGMYQCH 162
           V D+G +I L C +  S   ++  + WLK G+VL+      +         +  G Y C 
Sbjct: 9   VEDLGSKILLTCSLNDSATEVTGHR-WLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSC- 66

Query: 163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSA 222
                                           + +  G + + ++               
Sbjct: 67  ------------------------------VFLPEPMGTANIQLH-------------GP 83

Query: 223 AKMFEKHRILNVKKDESVILPCSAQGNPLPT-IKWYKQDSPVEE------SDRIQRIG-- 273
            ++       ++ + E+ +L C ++  P  T   WYK     ++        R       
Sbjct: 84  PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 143

Query: 274 --SSLSISHVE-ESDSGVWNCVANNSEGQDK--MQLFIQY 308
             S L I ++  E+D G + C   +S+G D+  + L ++ 
Sbjct: 144 GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 74.7 bits (183), Expect = 5e-16
 Identities = 34/168 (20%), Positives = 59/168 (35%), Gaps = 27/168 (16%)

Query: 18  SGQV---VVDVGHRIELHCRV--SPKRLSSAKAWLKDGLVLR--RNSDEVLVLDRVQRED 70
           +G V   V D+G +I L C +  S   ++  + WLK G+VL+      +         + 
Sbjct: 2   AGTVFTTVEDLGSKILLTCSLNDSATEVTGHR-WLKGGVVLKEDALPGQKTEFKVDSDDQ 60

Query: 71  AGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVS----PKRLS 126
            G Y C           +A + L G     A  +   ++ G    L C+          +
Sbjct: 61  WGEYSCVFL---PEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWA 117

Query: 127 SAKAWLKDGLVLRRNSDE-----------VLVLDRVQRE-DAGMYQCH 162
             K    +   L   S+             L ++ +  E D G Y+C+
Sbjct: 118 WYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCN 165

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 65.8 bits (160), Expect = 6e-13
 Identities = 16/136 (11%), Positives = 37/136 (27%), Gaps = 33/136 (24%)

Query: 234 VKKDESVILPCSAQGNPLPTI--KWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNC 291
                 ++L CS   +       +W K    ++E       G         +   G ++C
Sbjct: 10  EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP---GQKTEFKVDSDDQWGEYSC 66

Query: 292 VANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKD 351
           V                         +  + +H             ++       ++ + 
Sbjct: 67  VFLPEPMG------------------TANIQLH----------GPPRVKAVKSSEHINEG 98

Query: 352 ESVILPCSAQGNPLPT 367
           E+ +L C ++  P  T
Sbjct: 99  ETAMLVCKSESVPPVT 114

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 82.9 bits (205), Expect = 6e-20
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GSSLSISHVEES 284
           R+  V    +V   C A GNP+PT++W K     ++  RI          SL +  V  S
Sbjct: 16  RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS 75

Query: 285 DSGVWNCVANNSEGQ 299
           D G + CV  N  G 
Sbjct: 76  DKGNYTCVVENEYGS 90

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 46.7 bits (111), Expect = 4e-07
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 12/90 (13%)

Query: 13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE----------VLV 62
           +M      V    + ++  C      + + + WLK+G   ++               L+
Sbjct: 11 EKMEKRLHAVP-AANTVKFRCPAGGNPMPTMR-WLKNGKEFKQEHRIGGYKVRNQHWSLI 68

Query: 63 LDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
          ++ V   D G Y C V  +  S   +  + 
Sbjct: 69 MESVVPSDKGNYTCVVENEYGSINHTYHLD 98

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 11/66 (16%)

Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE----------VLVLDRVQRED 155
             V   + ++  C      + + + WLK+G   ++               L+++ V   D
Sbjct: 18  HAVPAANTVKFRCPAGGNPMPTMR-WLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSD 76

Query: 156 AGMYQC 161
            G Y C
Sbjct: 77  KGNYTC 82

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 86.1 bits (213), Expect = 6e-20
 Identities = 27/167 (16%), Positives = 61/167 (36%), Gaps = 8/167 (4%)

Query: 8   KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQ 67
           K+ + +   P    V++    + L C+ +      +  W  +  ++   +     +D   
Sbjct: 7   KAVVFL--EPQWYRVLE-KDSVTLKCQGAYSPEDQSTQWFHNESLISSQASS-YFIDAAT 62

Query: 68  REDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSS 127
            +D+G Y+C       S  +  +V +G  L++       V      I L C         
Sbjct: 63  VDDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPRW---VFKEEDPIHLRCHSWKNTALH 119

Query: 128 AKAWLKDGLVLR-RNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS 173
              +L++G   +  + +    + +   +D+G Y C    G  ++ S 
Sbjct: 120 KVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSE 166

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 69.1 bits (169), Expect = 5e-14
 Identities = 29/215 (13%), Positives = 58/215 (26%), Gaps = 53/215 (24%)

Query: 100 IASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMY 159
                   V     + L C+ +      +  W  +  ++   +     +D    +D+G Y
Sbjct: 11  FLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASS-YFIDAATVDDSGEY 69

Query: 160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRL 219
           +C  +                   SD  +               L V+ G L L   +  
Sbjct: 70  RCQTQLSTL---------------SDPVQ---------------LEVHIGWLLLQAPRW- 98

Query: 220 LSAAKMFEKHRILNVKKDESVILPCSAQGN-PLPTIKWYKQDSPVEESDRIQRIGSSLSI 278
                          K+++ + L C +  N  L  + + +     +         S   I
Sbjct: 99  -------------VFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHH----NSDFYI 141

Query: 279 SHVEESDSGVWNCVANNSEGQ---DKMQLFIQYAH 310
                 DSG + C           + +Q+ I    
Sbjct: 142 PKATLKDSGSYFCRGLVGSKNVSSETVQITITQGL 176

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 83.2 bits (206), Expect = 6e-20
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--GSSLSISHVEESDSGVWNC 291
               ES+ + C+A GNP P I W+K +  + E   I       +L+I  V + D G++ C
Sbjct: 22  TSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTC 81

Query: 292 VANNSEGQD--KMQLFIQYA 309
            A +  G    +    I+ A
Sbjct: 82  QACSVLGCAKVEAFFIIEGA 101

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 15/101 (14%)

Query: 2  QLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLR---- 54
          QL +  + + +I  +   Q    +G  IE+ C  S  P  ++     W KD   L     
Sbjct: 2  QLTVLERVAPTITGNLENQTTS-IGESIEVSCTASGNPPPQIM----WFKDNETLVEDSG 56

Query: 55 ---RNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
             ++ +  L + RV++ED G+Y C   +    A++ A  I
Sbjct: 57 IVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 97

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 14/66 (21%)

Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLR-------RNSDEVLVLDRVQRED 155
               +G  IE+ C  S  P  ++     W KD   L        ++ +  L + RV++ED
Sbjct: 20  QTTSIGESIEVSCTASGNPPPQIM----WFKDNETLVEDSGIVLKDGNRNLTIRRVRKED 75

Query: 156 AGMYQC 161
            G+Y C
Sbjct: 76  EGLYTC 81

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 85.0 bits (210), Expect = 7e-20
 Identities = 36/203 (17%), Positives = 66/203 (32%), Gaps = 34/203 (16%)

Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED 165
           V+   G  +EL C  S K+      W         N  ++L                  D
Sbjct: 5   VLGKKGDTVELTCTASQKKSIQF-HWKNS------NQIKILGNQGSFLTKGPSKLNDRAD 57

Query: 166 GKYHMLSSG--ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAA 223
            +  +   G   LII  +   D   +Y C   ++        V      LT N       
Sbjct: 58  SRRSLWDQGNFPLIIKNLKIEDS-DTYICEVEDQKE-----EVQLLVFGLTANSDT---- 107

Query: 224 KMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEE 283
                    ++ + +S+ L   +     P+++         +       G +LS+S +E 
Sbjct: 108 ---------HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG------GKTLSVSQLEL 152

Query: 284 SDSGVWNCVANNSEGQDKMQLFI 306
            DSG W C    ++ + + ++ I
Sbjct: 153 QDSGTWTCTVLQNQKKVEFKIDI 175

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 66.9 bits (163), Expect = 3e-13
 Identities = 17/155 (10%), Positives = 41/155 (26%), Gaps = 54/155 (34%)

Query: 238 ESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI---------------------GSSL 276
           ++V L C+A         W   +      ++   +                        L
Sbjct: 11  DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 70

Query: 277 SISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSA 336
            I +++  DS  + C   + + + ++ +F           S   L+              
Sbjct: 71  IIKNLKIEDSDTYICEVEDQKEEVQLLVF------GLTANSDTHLLQ------------- 111

Query: 337 AKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371
                          +S+ L   +     P+++ R
Sbjct: 112 --------------GQSLTLTLESPPGSSPSVQCR 132

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 66.5 bits (162), Expect = 3e-13
 Identities = 25/184 (13%), Positives = 61/184 (33%), Gaps = 35/184 (19%)

Query: 21  VVVDVGHRIELHCRVSP--------KRLSSAKAWLKDGLVLRRNSDEV------------ 60
           V+   G  +EL C  S         K  +  K     G  L +   ++            
Sbjct: 5   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64

Query: 61  -----LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIE 115
                L++  ++ ED+  Y C    +D   ++   V        + +++   +  G  + 
Sbjct: 65  QGNFPLIIKNLKIEDSDTYIC--EVEDQKEEVQLLVF------GLTANSDTHLLQGQSLT 116

Query: 116 LHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE 175
           L     P    S +              + L + +++ +D+G + C +   +  +    +
Sbjct: 117 LTLESPPGSSPSVQ-CRSPRGKNI-QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKID 174

Query: 176 LIIH 179
           +++ 
Sbjct: 175 IVVL 178

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 51.5 bits (123), Expect = 5e-08
 Identities = 9/82 (10%), Positives = 26/82 (31%), Gaps = 4/82 (4%)

Query: 11  LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRED 70
             +  +      +  G  + L     P    S +              + L + +++ +D
Sbjct: 99  FGLTANSD--THLLQGQSLTLTLESPPGSSPSVQ-CRSPRGKNI-QGGKTLSVSQLELQD 154

Query: 71  AGMYQCHVSADDDSAQMSAQVI 92
           +G + C V  +    +    ++
Sbjct: 155 SGTWTCTVLQNQKKVEFKIDIV 176

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 85.8 bits (212), Expect = 9e-20
 Identities = 43/214 (20%), Positives = 71/214 (33%), Gaps = 49/214 (22%)

Query: 10  SLSIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRN---------- 56
           S+++  S   +V +   + ++L C  S     R+     W  D     R           
Sbjct: 4   SVTVHSSEP-EVRIPENNPVKLSCAYSGFSSPRVE----WKFDQGDTTRLVCYNNKITAS 58

Query: 57  -------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIA-----SSN 104
                      +    V RED G Y C VS +  ++    +V L   +V +       + 
Sbjct: 59  YEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL---IVLVPPSKPTVNI 115

Query: 105 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS----------------DEVLVL 148
                +G+R  L C        S   W KDG+V+  N                    LV 
Sbjct: 116 PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVF 175

Query: 149 DRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVD 182
           D +   D G Y C   +G    ++S  + +  V+
Sbjct: 176 DPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE 209

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 85.8 bits (212), Expect = 9e-20
 Identities = 21/151 (13%), Positives = 46/151 (30%), Gaps = 36/151 (23%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEE------------SDRIQRIGSSLSIS 279
           + + ++  V L C+  G   P ++W                      DR+  + + ++  
Sbjct: 14  VRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFK 73

Query: 280 HVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKM 339
            V   D+G + C+ +   G    ++ ++             LI+                
Sbjct: 74  SVTREDTGTYTCMVSEEGGNSYGEVKVK-------------LIVL----------VPPSK 110

Query: 340 FEKHRILNVKKDESVILPCSAQ-GNPLPTIK 369
              +   +       +L CS Q G+P     
Sbjct: 111 PTVNIPSSATIGNRAVLTCSEQDGSPPSEYT 141

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 84.6 bits (209), Expect = 2e-19
 Identities = 33/230 (14%), Positives = 63/230 (27%), Gaps = 43/230 (18%)

Query: 95  GELVEIASSNQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRV 151
           G +   +S  +V +   + ++L C  S     R+     W  D                 
Sbjct: 3   GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVE----WKFDQ-------------GDT 45

Query: 152 QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRL 211
            R      +               +    V   D   +Y C    +   +        ++
Sbjct: 46  TRLVCYNNKITASYEDRVTFLPTGITFKSVTREDT-GTYTCMVSEEGGNS----YGEVKV 100

Query: 212 SLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQ-GNPLPTIKWYKQDSPVEESDRIQ 270
            L      L        +   +       +L CS Q G+P     W+K    +  + +  
Sbjct: 101 KLIV----LVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKST 156

Query: 271 RI-----------GSSLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQ 307
           R               L    +  SD+G ++C A N  G       + ++
Sbjct: 157 RAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 206

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 86.8 bits (214), Expect = 3e-19
 Identities = 36/203 (17%), Positives = 65/203 (32%), Gaps = 34/203 (16%)

Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED 165
           V+   G  +EL C  S K+      W         N  ++L                  D
Sbjct: 4   VLGKKGDTVELTCTASQKKSIQF-HWKNS------NQIKILGNQGSFLTKGPSKLNDRAD 56

Query: 166 GKYHMLSSG--ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAA 223
            +  +   G   LII  +   D   +Y C   ++     LL       S T         
Sbjct: 57  SRRSLWDQGNFPLIIKNLKIEDS-DTYICEVEDQKEEVQLLVFGLTANSDTH-------- 107

Query: 224 KMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEE 283
                     + + +S+ L   +     P+++         +       G +LS+S +E 
Sbjct: 108 ----------LLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG------GKTLSVSQLEL 151

Query: 284 SDSGVWNCVANNSEGQDKMQLFI 306
            DSG W C    ++ + + ++ I
Sbjct: 152 QDSGTWTCTVLQNQKKVEFKIDI 174

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 86.0 bits (212), Expect = 7e-19
 Identities = 46/384 (11%), Positives = 112/384 (29%), Gaps = 78/384 (20%)

Query: 21  VVVDVGHRIELHCRVSP--------KRLSSAKAWLKDGLVLRRNSDEV------------ 60
           V+   G  +EL C  S         K  +  K     G  L +   ++            
Sbjct: 4   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63

Query: 61  -----LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIE 115
                L++  ++ ED+  Y C V    +  Q+            + +++   +  G  + 
Sbjct: 64  QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLV--------FGLTANSDTHLLQGQSLT 115

Query: 116 LHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE 175
           L     P    S +              + L + +++ +D+G + C +   +  +    +
Sbjct: 116 LTLESPPGSSPSVQ-CRSPR-GKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKID 173

Query: 176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVK 235
           +++    ++                +S++    G              +          K
Sbjct: 174 IVVLAFQKA----------------SSIVYKKEG-----------EQVEFSFPLAFTVEK 206

Query: 236 KDESVILPCSAQGNPLP----TIKWYKQDSPVEESDRIQRIGSS--------LSISHVEE 283
              S  L   A+         T     ++  V+   +  ++           L  +  + 
Sbjct: 207 LTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQY 266

Query: 284 SDSGVWNCVANNSEGQD--KMQLFIQYAHGKYHMLS--SGELIIHQVDEKNKRLLSAAKM 339
           + SG          G+   ++ L +  A      L+         ++    K     AK+
Sbjct: 267 AGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKV 326

Query: 340 FEKHRILNVKKDESVILPCSAQGN 363
            ++ + + V   E+ +  C    +
Sbjct: 327 SKREKAVWVLNPEAGMWQCLLSDS 350

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 84.1 bits (207), Expect = 3e-18
 Identities = 33/291 (11%), Positives = 75/291 (25%), Gaps = 39/291 (13%)

Query: 11  LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRED 70
             +  +    ++   G  + L     P    S +              + L + +++ +D
Sbjct: 98  FGLTANSDTHLLQ--GQSLTLTLESPPGSSPSVQ-CRSPR-GKNIQGGKTLSVSQLELQD 153

Query: 71  AGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVV-VDVGHRIELHCRVSPKRLSSAK 129
           +G + C V  +    +    +++       +   +     V     L   V     S   
Sbjct: 154 SGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGEL 213

Query: 130 AWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVD--ESDRY 187
            W  +      +S   +  D   +E +          +        L + Q     +   
Sbjct: 214 WWQAER---ASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSG 270

Query: 188 RSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQ 247
                    K  G     VN   +  T                           L C   
Sbjct: 271 N-LTLALEAKT-GKLHQEVNLVVMRAT----------------------QLQKNLTCEVW 306

Query: 248 GNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEG 298
           G   P +         +  ++  ++        V   ++G+W C+ ++S  
Sbjct: 307 GPTSPKLMLSL-----KLENKEAKVSKREKAVWVLNPEAGMWQCLLSDSGQ 352

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 64.8 bits (157), Expect = 8e-12
 Identities = 15/155 (9%), Positives = 43/155 (27%), Gaps = 54/155 (34%)

Query: 238 ESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI---------------------GSSL 276
           ++V L C+A         W   +      ++   +                        L
Sbjct: 10  DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 69

Query: 277 SISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSA 336
            I +++  DS  + C   + + +                    +L++  +   +      
Sbjct: 70  IIKNLKIEDSDTYICEVEDQKEEV-------------------QLLVFGLTANSD----- 105

Query: 337 AKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371
                     ++ + +S+ L   +     P+++ R
Sbjct: 106 ---------THLLQGQSLTLTLESPPGSSPSVQCR 131

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 54.4 bits (130), Expect = 2e-08
 Identities = 28/187 (14%), Positives = 51/187 (27%), Gaps = 33/187 (17%)

Query: 5   IQVKSSLSIEMS-PSGQVVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSDEV 60
           +  K    +E S P    V  +    EL  +      S +          + ++R + + 
Sbjct: 186 VYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDP 245

Query: 61  -------------LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVV 107
                        L     Q   +G     + A          +              V+
Sbjct: 246 KLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNL-------------VVM 292

Query: 108 VDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDG 166
                +  L C V          +   +    + +  E  V   V   +AGM+QC + D 
Sbjct: 293 RATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAV--WVLNPEAGMWQCLLSDS 350

Query: 167 KYHMLSS 173
              +L S
Sbjct: 351 GQVLLES 357

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 86.5 bits (213), Expect = 4e-19
 Identities = 35/341 (10%), Positives = 77/341 (22%), Gaps = 93/341 (27%)

Query: 20  QVVVDVGHRIELHCRVSPKRLSSAK----------AWLKDGLVLRR-------------- 55
           Q+ V       + C +    L               W                       
Sbjct: 16  QIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRIS 75

Query: 56  NSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI----LGGELVEIASSNQVVVDVG 111
              +VL        D G Y C +      ++++  +            +      +    
Sbjct: 76  KEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEY 135

Query: 112 HRIELHCRVSPKRLSSAKA----WLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCH 162
               + C        S+      W      ++           L        + G Y C 
Sbjct: 136 GIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCV 195

Query: 163 I---EDGK-YHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKR 218
           +   E+G+ +H+  +  + +    ++                                  
Sbjct: 196 VTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIH--------------------------- 228

Query: 219 LLSAAKMFEKHRILNVKKDESVILPCSA----QGNPLPTIKWYKQDSPVEESDRIQRI-- 272
                     H +   +  E +++PC+       +    + W       ++      I  
Sbjct: 229 ------SPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINE 282

Query: 273 ------------GSSLSISHVEESDSGV-WNCVANNSEGQD 300
                          LSI  V   D    + C A +++G+ 
Sbjct: 283 SISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEV 323

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 83.0 bits (204), Expect = 6e-18
 Identities = 28/207 (13%), Positives = 65/207 (31%), Gaps = 25/207 (12%)

Query: 170 MLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKH 229
                 L       +D   +Y C   N  T  S ++     L + +     ++      H
Sbjct: 75  SKEKDVLWFRPTLLNDT-GNYTCMLRNT-TYCSKVAFP---LEVVQKDSCFNSPMKLPVH 129

Query: 230 RILNVKKDESVILP---CSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDS 286
           ++      + +  P        +  PTI WY     ++  + +   G +LS      S++
Sbjct: 130 KLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNN 189

Query: 287 GVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRIL 346
           G + CV    E               +H+  +  + +    +     +  +     H + 
Sbjct: 190 GNYTCVVTYPENGR-----------TFHLTRTLTVKVVGSPKNAVPPVIHSP--NDHVVY 236

Query: 347 NVKKDESVILPCSA----QGNPLPTIK 369
             +  E +++PC+       +    + 
Sbjct: 237 EKEPGEELLIPCTVYFSFLMDSRNEVW 263

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 68.7 bits (167), Expect = 4e-13
 Identities = 29/218 (13%), Positives = 56/218 (25%), Gaps = 35/218 (16%)

Query: 5   IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKA----WLKDGLVLRRN---- 56
           +Q  S  +  M      +        + C        S+      W      ++      
Sbjct: 114 VQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVI 173

Query: 57  -SDEVLVLDRVQREDAGMYQCHVSADDDSAQ----MSAQVILGGE--------LVEIASS 103
                L        + G Y C V+  ++        +  V + G         +      
Sbjct: 174 PEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDH 233

Query: 104 NQVVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSDEVLVLDRVQREDAGMYQ 160
                + G  + + C V    L  ++    W  DG      + +V + + +         
Sbjct: 234 VVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTE--- 290

Query: 161 CHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKL 198
                       +  L I +V   D  RSY C   +  
Sbjct: 291 --------DETRTQILSIKKVTSEDLKRSYVCHARSAK 320

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 68.7 bits (167), Expect = 4e-13
 Identities = 24/159 (15%), Positives = 45/159 (28%), Gaps = 42/159 (26%)

Query: 234 VKKDESVILPC-----------SAQGNPLPTIKWYKQDSPVE---------ESDRIQRIG 273
           V +DE   + C           S   +   T+ WY      +           +RI +  
Sbjct: 19  VFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEK 78

Query: 274 SSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRL 333
             L       +D+G + C+  N+    K+                  L + Q D      
Sbjct: 79  DVLWFRPTLLNDTGNYTCMLRNTTYCSKVAF---------------PLEVVQKDS----C 119

Query: 334 LSAAKMFEKHRILNVKKDESVILP---CSAQGNPLPTIK 369
            ++      H++      + +  P        +  PTI 
Sbjct: 120 FNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTIT 158

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 40.6 bits (94), Expect = 6e-04
 Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 25/103 (24%)

Query: 16  SPSGQVVVDV--GHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSDE----------- 59
           SP+  VV +   G  + + C V    L  ++    W  DG      + +           
Sbjct: 229 SPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSR 288

Query: 60  --------VLVLDRVQRED-AGMYQCHVSADDDSAQMSAQVIL 93
                   +L + +V  ED    Y CH  +       +A+V  
Sbjct: 289 TEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 80.8 bits (200), Expect = 4e-19
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 221 SAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSL 276
           S  ++ +      V+  ESV L     G    T  W K    ++ES+ ++      GS L
Sbjct: 6   SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKL 65

Query: 277 SISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
           +I    +   G +  +  N  G  + Q+ + 
Sbjct: 66  TILAARQEHCGCYTLLVENKLGSRQAQVNLT 96

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 49.2 bits (118), Expect = 9e-08
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 16/84 (19%)

Query: 21 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLR-------RNSDEV--LVLDRVQR 68
            V  G  +EL  +V+       +    W+K    ++        NS+    L +   ++
Sbjct: 17 QKVRAGESVELFGKVTGTQPITCT----WMKFRKQIQESEHMKVENSENGSKLTILAARQ 72

Query: 69 EDAGMYQCHVSADDDSAQMSAQVI 92
          E  G Y   V     S Q    + 
Sbjct: 73 EHCGCYTLLVENKLGSRQAQVNLT 96

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 16/71 (22%)

Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLR-------RNSDEV--LVLDRVQR 153
             V  G  +EL  +V+       +    W+K    ++        NS+    L +   ++
Sbjct: 17  QKVRAGESVELFGKVTGTQPITCT----WMKFRKQIQESEHMKVENSENGSKLTILAARQ 72

Query: 154 EDAGMYQCHIE 164
           E  G Y   +E
Sbjct: 73  EHCGCYTLLVE 83

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 80.1 bits (198), Expect = 5e-19
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNC 291
             V   + + L C  + +   +I W +    + ES+R +  G  + +     +DSG++ C
Sbjct: 13  FLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYAC 71

Query: 292 VANNSEGQD 300
           V ++  G D
Sbjct: 72  VTSSPSGSD 80

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 60.9 bits (148), Expect = 5e-12
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 12/91 (13%)

Query: 9  SSLSIEMSPSGQVVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLR-----RNSDEVL 61
          SS S  +      +V  G  ++L CR+    + ++    WL+DG+ L      R + E +
Sbjct: 2  SSGSSGVEVE-SFLVHPGDLLQLRCRLRDDVQSIN----WLRDGVQLAESNRTRITGEEV 56

Query: 62 VLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
           +      D+G+Y C  S+   S      V 
Sbjct: 57 EVQDSVPADSGLYACVTSSPSGSDTTYFSVN 87

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 52.8 bits (127), Expect = 4e-09
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 11/63 (17%)

Query: 106 VVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLR-----RNSDEVLVLDRVQREDAGM 158
            +V  G  ++L CR+    + ++    WL+DG+ L      R + E + +      D+G+
Sbjct: 13  FLVHPGDLLQLRCRLRDDVQSIN----WLRDGVQLAESNRTRITGEEVEVQDSVPADSGL 68

Query: 159 YQC 161
           Y C
Sbjct: 69  YAC 71

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 83.6 bits (206), Expect = 6e-19
 Identities = 35/206 (16%), Positives = 69/206 (33%), Gaps = 21/206 (10%)

Query: 108 VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGK 167
           V   + + L     P  L +  AW K             V +         Y      G+
Sbjct: 11  VAEDNNVLLLVHNLPLALGAF-AWYKGNTTAIDKEIARFVPNSNMNFTGQAYS-----GR 64

Query: 168 YHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFE 227
             + S+G L+   +   D    Y     ++    +  +V                 + F 
Sbjct: 65  EIIYSNGSLLFQMITMKDM-GVYTLDMTDENYRRTQATV--------RFHVHQPVTQPFL 115

Query: 228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--GSSLSISHVEESD 285
           +     VK+ +SV L C +  +    I+W      ++ ++R+      S L I  ++  D
Sbjct: 116 QVTNTTVKELDSVTLTCLS-NDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKRED 174

Query: 286 SGVWNCVANNSEGQ---DKMQLFIQY 308
           +G + C  +N       + ++L I +
Sbjct: 175 AGEYQCEISNPVSVRRSNSIKLDIIF 200

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 68.2 bits (166), Expect = 1e-13
 Identities = 35/189 (18%), Positives = 60/189 (31%), Gaps = 42/189 (22%)

Query: 11  LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------------- 56
           ++IE  P     V   + + L     P  L +  AW K                      
Sbjct: 2   VTIEAVPP---QVAEDNNVLLLVHNLPLALGAF-AWYKGNTTAIDKEIARFVPNSNMNFT 57

Query: 57  -----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIA---S 102
                      S+  L+   +  +D G+Y   ++ D++  +  A V              
Sbjct: 58  GQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMT-DENYRRTQATVRFHVHQPVTQPFLQ 116

Query: 103 SNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS-------DEVLVLDRVQRED 155
                V     + L C  +    +    WL +   L+          + +L +D ++RED
Sbjct: 117 VTNTTVKELDSVTLTCLSNDIGAN--IQWLFNSQSLQLTERMTLSQNNSILRIDPIKRED 174

Query: 156 AGMYQCHIE 164
           AG YQC I 
Sbjct: 175 AGEYQCEIS 183

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 53.1 bits (127), Expect = 2e-08
 Identities = 24/158 (15%), Positives = 42/158 (26%), Gaps = 44/158 (27%)

Query: 233 NVKKDESVILPCSAQGNPLPTIKWYKQDSPVEE-------------------SDR-IQRI 272
            V +D +V+L        L    WYK ++   +                   S R I   
Sbjct: 10  QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS 69

Query: 273 GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKR 332
             SL    +   D GV+     +           +             +    +   N  
Sbjct: 70  NGSLLFQMITMKDMGVYTLDMTDENY--------RRTQATVRFHVHQPVTQPFLQVTNT- 120

Query: 333 LLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKY 370
                          VK+ +SV L C +  +    I++
Sbjct: 121 --------------TVKELDSVTLTCLS-NDIGANIQW 143

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 46.2 bits (109), Expect = 4e-06
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 10/96 (10%)

Query: 5   IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS------- 57
             V   ++          V     + L C  +    +    WL +   L+          
Sbjct: 104 FHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIGAN--IQWLFNSQSLQLTERMTLSQN 161

Query: 58  DEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93
           + +L +D ++REDAG YQC +S +  S + S  + L
Sbjct: 162 NSILRIDPIKREDAGEYQCEIS-NPVSVRRSNSIKL 196

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 79.7 bits (197), Expect = 6e-19
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 4/90 (4%)

Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLS 277
             K+    R + +K   +  L     G P PT  W   DS    +  +        +S+ 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 278 ISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
               + +DSG +     N  G+D+    + 
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVI 91

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 16/90 (17%)

Query: 15 MSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE---------VLV 62
          ++ S ++ +  G    L       P    +    W           +           + 
Sbjct: 6  LTASRKIKIKAGFTHNLEVDFIGAPDPTAT----WTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 63 LDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
              +R D+G Y+  V  +    +   +VI
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAIFEVI 91

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 40.0 bits (94), Expect = 8e-05
 Identities = 8/71 (11%), Positives = 18/71 (25%), Gaps = 16/71 (22%)

Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE---------VLVLDRVQR 153
           + +  G    L       P    +    W           +           +     +R
Sbjct: 12  IKIKAGFTHNLEVDFIGAPDPTAT----WTVGDSGAALAPELLVDAKSSTTSIFFPSAKR 67

Query: 154 EDAGMYQCHIE 164
            D+G Y+  ++
Sbjct: 68  ADSGNYKLKVK 78

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 80.1 bits (198), Expect = 6e-19
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 6/80 (7%)

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVW 289
           V + ES    C   G P+PT+ W ++   +  S R Q       S+  IS V+ SD G +
Sbjct: 26  VYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNY 85

Query: 290 NCVANNSEGQD--KMQLFIQ 307
           + V  NSEG+   +  L IQ
Sbjct: 86  SVVVENSEGKQEAEFTLTIQ 105

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 46.6 bits (111), Expect = 7e-07
 Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 16/84 (19%)

Query: 21  VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE---------VLVLDRVQR 68
           + V  G      C     P   ++    WL+ G VL  ++              +  VQ 
Sbjct: 24  MTVYEGESARFSCDTDGEPVPTVT----WLRKGQVLSTSARHQVTTTKYKSTFEISSVQA 79

Query: 69  EDAGMYQCHVSADDDSAQMSAQVI 92
            D G Y   V   +   +    + 
Sbjct: 80  SDEGNYSVVVENSEGKQEAEFTLT 103

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 16/87 (18%)

Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE---------VLVLDRVQR 153
           + V  G      C     P   ++    WL+ G VL  ++              +  VQ 
Sbjct: 24  MTVYEGESARFSCDTDGEPVPTVT----WLRKGQVLSTSARHQVTTTKYKSTFEISSVQA 79

Query: 154 EDAGMYQCHIEDGKYHMLSSGELIIHQ 180
            D G Y   +E+ +    +   L I +
Sbjct: 80  SDEGNYSVVVENSEGKQEAEFTLTIQK 106

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 80.1 bits (198), Expect = 6e-19
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--GSSLSISHVEESDSGVW 289
             +  D + +L C A G+PLP I W K+       D    I    +L I ++  SD+G +
Sbjct: 18  QTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTY 77

Query: 290 NCVANNSEGQD 300
            CVA +S G+ 
Sbjct: 78  TCVATSSSGET 88

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 52.4 bits (126), Expect = 4e-09
 Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 15/91 (16%)

Query: 12 SIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLD---- 64
           I   P+    + V     L C+ +  P   +S    WLK+G           + +    
Sbjct: 10 IILQGPA-NQTLAVDGTALLKCKATGDPLPVIS----WLKEGFTFPGRDPRATIQEQGTL 64

Query: 65 ---RVQREDAGMYQCHVSADDDSAQMSAQVI 92
              ++  D G Y C  ++       SA + 
Sbjct: 65 QIKNLRISDTGTYTCVATSSSGETSWSAVLD 95

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 14/66 (21%)

Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLD-------RVQRED 155
             + V     L C+ +  P   +S    WLK+G           + +        ++  D
Sbjct: 18  QTLAVDGTALLKCKATGDPLPVIS----WLKEGFTFPGRDPRATIQEQGTLQIKNLRISD 73

Query: 156 AGMYQC 161
            G Y C
Sbjct: 74  TGTYTC 79

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 83.1 bits (205), Expect = 9e-19
 Identities = 26/159 (16%), Positives = 50/159 (31%), Gaps = 36/159 (22%)

Query: 224 KMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQD------------SPVEESDRIQR 271
            ++     + V ++ES+ L C+  G   P ++W                     +DR+  
Sbjct: 3   SVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF 62

Query: 272 IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNK 331
             S ++ S V   D+G + C+ +   GQ+  ++ I              L +        
Sbjct: 63  SSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIH-------------LTVL------- 102

Query: 332 RLLSAAKMFEKHRILNVKKDESVILPCSAQ-GNPLPTIK 369
                          +V      +L CS   G+P     
Sbjct: 103 ---VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYS 138

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 81.2 bits (200), Expect = 4e-18
 Identities = 39/219 (17%), Positives = 53/219 (24%), Gaps = 43/219 (19%)

Query: 98  VEIASSNQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE 154
           V  A S+  V      I+L C  S     R+     W                       
Sbjct: 4   VYTAQSDVQVP-ENESIKLTCTYSGFSSPRVE----WKFVQ-------------GSTTAL 45

Query: 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214
                Q           SS  +    V   D    Y C    +             + LT
Sbjct: 46  VCYNSQITAPYADRVTFSSSGITFSSVTRKDN-GEYTCMVSEEGGQN----YGEVSIHLT 100

Query: 215 ENKRLLSAAKMFEKHRILNVKKDESVILPCSAQ-GNPLPTIKWYKQDSPVEESDR----- 268
               +L            +V      +L CS   G+P     W+K    +  +D      
Sbjct: 101 ----VLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRA 156

Query: 269 -------IQRIGSSLSISHVEESDSGVWNCVANNSEGQD 300
                  I      L    V   DSG + C A N  G  
Sbjct: 157 FMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTA 195

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 78.9 bits (194), Expect = 2e-17
 Identities = 39/192 (20%), Positives = 56/192 (29%), Gaps = 50/192 (26%)

Query: 12  SIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRN------------ 56
           S+  + S  V V     I+L C  S     R+     W                      
Sbjct: 3   SVYTAQS-DVQVPENESIKLTCTYSGFSSPRVE----WKFVQGSTTALVCYNSQITAPYA 57

Query: 57  -----SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIA-----SSNQV 106
                S   +    V R+D G Y C VS +         + L    V +       S   
Sbjct: 58  DRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL---TVLVPPSKPTISVPS 114

Query: 107 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE-----------------VLVLD 149
            V +G+R  L C        S  +W KDG+ +     +                  L+ D
Sbjct: 115 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFD 174

Query: 150 RVQREDAGMYQC 161
            V   D+G Y C
Sbjct: 175 PVTAFDSGEYYC 186

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 18/108 (16%)

Query: 1   MQLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE- 59
           + + + V    S          V +G+R  L C        S  +W KDG+ +     + 
Sbjct: 95  VSIHLTVLVPPSKPTISV-PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKK 153

Query: 60  ----------------VLVLDRVQREDAGMYQCHVSADDDSAQMSAQV 91
                            L+ D V   D+G Y C       +A  S   
Sbjct: 154 TRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAA 201

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 79.5 bits (196), Expect = 1e-18
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNC 291
           L V   + + L C  + +   +I W +    + ES+R +  G  + +     +DSG++ C
Sbjct: 19  LLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYAC 77

Query: 292 VANNSEGQD 300
           V ++  G D
Sbjct: 78  VTSSPSGSD 86

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 60.2 bits (146), Expect = 8e-12
 Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 12/93 (12%)

Query: 6  QVKSSLSIEMSPSGQVVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRN-----SD 58
          +      + +     ++V  G  ++L CR+    + ++    WL+DG+ L  +     + 
Sbjct: 5  EQAQPWGVPVEVE-SLLVHPGDLLQLRCRLRDDVQSIN----WLRDGVQLVESNRTRITG 59

Query: 59 EVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV 91
          E + +      D+G+Y C  S+   S      V
Sbjct: 60 EEVEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 52.9 bits (127), Expect = 3e-09
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 11/63 (17%)

Query: 106 VVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGM 158
           ++V  G  ++L CR+    + ++    WL+DG+ L  +     + E + +      D+G+
Sbjct: 19  LLVHPGDLLQLRCRLRDDVQSIN----WLRDGVQLVESNRTRITGEEVEVRDSIPADSGL 74

Query: 159 YQC 161
           Y C
Sbjct: 75  YAC 77

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 79.3 bits (196), Expect = 1e-18
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GSSLSISHVEESDS 286
           +++ +     +     G P P + WY     V+  D  + I       SL    V  SD+
Sbjct: 15  MSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDA 74

Query: 287 GVWNCVANNSEGQ 299
           G + CVA N  G+
Sbjct: 75  GAYACVAKNRAGE 87

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 17/85 (20%)

Query: 21 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE----------VLVLDRVQ 67
          + +D G    +  +VS  P   +S    W  +G  ++ +              L+ + V+
Sbjct: 15 MSIDEGRFCRMDFKVSGLPAPDVS----WYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVR 70

Query: 68 REDAGMYQCHVSADDDSAQMSAQVI 92
            DAG Y C        A  + Q+ 
Sbjct: 71 ASDAGAYACVAKNRAGEATFTVQLD 95

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 17/69 (24%)

Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE----------VLVLDRVQ 152
           + +D G    +  +VS  P   +S    W  +G  ++ +              L+ + V+
Sbjct: 15  MSIDEGRFCRMDFKVSGLPAPDVS----WYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVR 70

Query: 153 REDAGMYQC 161
             DAG Y C
Sbjct: 71  ASDAGAYAC 79

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 79.7 bits (197), Expect = 1e-18
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GSSLSISHVEESDS 286
           L V++ +   + C   G P P + W     PV      + +       SL I  V   D+
Sbjct: 19  LTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDA 78

Query: 287 GVWNCVANNSEGQ 299
           G++ C+A N  GQ
Sbjct: 79  GIYTCIATNRAGQ 91

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 17/85 (20%)

Query: 21 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE----------VLVLDRVQ 67
          + V  G    + C+VS  P   LS    W  DG  +R +S             L+++ V 
Sbjct: 19 LTVQEGKLCRMDCKVSGLPTPDLS----WQLDGKPVRPDSAHKMLVRENGVHSLIIEPVT 74

Query: 68 REDAGMYQCHVSADDDSAQMSAQVI 92
            DAG+Y C  +        S +++
Sbjct: 75 SRDAGIYTCIATNRAGQNSFSLELV 99

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 17/69 (24%)

Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE----------VLVLDRVQ 152
           + V  G    + C+VS  P   LS    W  DG  +R +S             L+++ V 
Sbjct: 19  LTVQEGKLCRMDCKVSGLPTPDLS----WQLDGKPVRPDSAHKMLVRENGVHSLIIEPVT 74

Query: 153 REDAGMYQC 161
             DAG+Y C
Sbjct: 75  SRDAGIYTC 83

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 78.9 bits (195), Expect = 2e-18
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG-SSLSISHVEESDSGVWNCV 292
           V + +  +L CS +G P+P I W     P++ +      G + L I      D G + C+
Sbjct: 23  VIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCL 82

Query: 293 ANNSEGQD--KMQLFIQ 307
           A N+ GQ      + + 
Sbjct: 83  AENALGQVSCSAWVTVH 99

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 49.2 bits (118), Expect = 6e-08
 Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 18/97 (18%)

Query: 10 SLSIEMSPS-----GQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEV- 60
          S  +E++PS         V  G    L C V   P  R++    WL +G  ++       
Sbjct: 5  SSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRIT----WLLNGQPIQYARSTCE 60

Query: 61 -----LVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
               L +     ED G Y C           SA V 
Sbjct: 61 AGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 13/83 (15%)

Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEV------LVLDRVQREDA 156
             V  G    L C V   P  R++    WL +G  ++            L +     ED 
Sbjct: 21  CAVIEGQDFVLQCSVRGTPVPRIT----WLLNGQPIQYARSTCEAGVAELHIQDALPEDH 76

Query: 157 GMYQCHIEDGKYHMLSSGELIIH 179
           G Y C  E+    +  S  + +H
Sbjct: 77  GTYTCLAENALGQVSCSAWVTVH 99

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 81.4 bits (201), Expect = 3e-18
 Identities = 43/212 (20%), Positives = 74/212 (34%), Gaps = 51/212 (24%)

Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
           +VV       L+C+V   P+  +     W KDG  +  N                     
Sbjct: 19  LVVKKNEPATLNCKVEGKPEPTIE----WFKDGEPVSTNEK------------------- 55

Query: 163 IEDGKYHMLSSGELIIHQVDESDRYR---SYQCRGVNKLTGASLLSVNRGRLSLTENKRL 219
                      G L  ++  +  + +    Y C   N++ G ++        S   + ++
Sbjct: 56  --KSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRV-GQAV--------SRHASLQI 104

Query: 220 LSAAKMFEKH-RILNVKKDESVILPCS-AQGNPLPTIKWYKQDSPVEESDRIQRIGS--- 274
                 F    +   V K E+ +L C   +G P PT+ W K   P+++   +    S   
Sbjct: 105 AVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRV 164

Query: 275 ------SLSISHVEESDSGVWNCVANNSEGQD 300
                 +L IS+VE  D G + C+A N  G  
Sbjct: 165 RIVDGGNLLISNVEPIDEGNYKCIAQNLVGTR 196

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 79.9 bits (197), Expect = 1e-17
 Identities = 36/148 (24%), Positives = 55/148 (37%), Gaps = 34/148 (22%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR--------IGSSLSISHVEE 283
           L VKK+E   L C  +G P PTI+W+K   PV  +++           +    ++   +E
Sbjct: 19  LVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKE 78

Query: 284 SDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH 343
            D G + CVA N  GQ          H                     ++      F   
Sbjct: 79  QDGGEYWCVAKNRVGQ------AVSRHASL------------------QIAVLRDDFRVE 114

Query: 344 -RILNVKKDESVILPCS-AQGNPLPTIK 369
            +   V K E+ +L C   +G P PT+ 
Sbjct: 115 PKDTRVAKGETALLECGPPKGIPEPTLI 142

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 67.2 bits (164), Expect = 4e-13
 Identities = 37/201 (18%), Positives = 62/201 (30%), Gaps = 49/201 (24%)

Query: 21  VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEV-------------LVLD 64
           +VV       L+C+V   P+  +     W KDG  +  N  +                + 
Sbjct: 19  LVVKKNEPATLNCKVEGKPEPTIE----WFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQ 74

Query: 65  RVQREDAGMYQCHVS---ADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRV- 120
             + +D G Y C          S   S Q+ +  +   +   +  V   G    L C   
Sbjct: 75  GKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVA-KGETALLECGPP 133

Query: 121 --SPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELI 177
              P+  L     W+KDG+ L                            +  ++  G L+
Sbjct: 134 KGIPEPTLI----WIKDGVPLDDLKAMSFG----------------ASSRVRIVDGGNLL 173

Query: 178 IHQVDESDRYRSYQCRGVNKL 198
           I  V+  D    Y+C   N +
Sbjct: 174 ISNVEPIDEGN-YKCIAQNLV 193

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 23/86 (26%)

Query: 12  SIEMSPSGQVVVDVGHRIELHCRV---SPK-RLSSAKAWLKDGLVLRRN----------- 56
              + P    V   G    L C      P+  L     W+KDG+ L              
Sbjct: 110 DFRVEPKDTRVA-KGETALLECGPPKGIPEPTLI----WIKDGVPLDDLKAMSFGASSRV 164

Query: 57  ---SDEVLVLDRVQREDAGMYQCHVS 79
                  L++  V+  D G Y+C   
Sbjct: 165 RIVDGGNLLISNVEPIDEGNYKCIAQ 190

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 80.9 bits (199), Expect = 5e-18
 Identities = 30/211 (14%), Positives = 61/211 (28%), Gaps = 20/211 (9%)

Query: 100 IASSNQVVVDVGHRIELHCRVSPKRLSSAK---AWLKDGLVLRRNSDEVLVLD--RVQRE 154
                ++    G    L C+ +            WL      +     +++    ++   
Sbjct: 4   TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDN 63

Query: 155 DAGMYQCHIEDGKYHMLSS-GELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSL 213
                +  +      + S    + +  +  SD   +YQC+ V K  G     V   +  L
Sbjct: 64  YYPDLKGRVHFTSNDVKSGDASINVTNLQLSDI-GTYQCK-VKKAPG-----VANKKFLL 116

Query: 214 TENKRLLSAAKMFEKHRILNVKKDESVILPCSA-QGNPLPTIKWYKQDSPVEESDRIQRI 272
           T    +L            + +      L C   +G+     +W K              
Sbjct: 117 T----VLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAE 172

Query: 273 --GSSLSISHVEESDSGVWNCVANNSEGQDK 301
                +S+ +     SG ++C   N  G D+
Sbjct: 173 MTSPVISVKNASSEYSGTYSCTVQNRVGSDQ 203

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 77.0 bits (189), Expect = 1e-16
 Identities = 29/197 (14%), Positives = 55/197 (27%), Gaps = 44/197 (22%)

Query: 11  LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAK---AWLKDGL--------VLRRNSDE 59
           LSI  +P  ++    G    L C+ +            WL            ++  + D+
Sbjct: 1   LSIT-TPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDK 59

Query: 60  V-------------------------LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILG 94
           +                         + +  +Q  D G YQC V      A     + + 
Sbjct: 60  IYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVL 119

Query: 95  GELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS-------DEVLV 147
            +            ++G+  +L C      L     W K        +         V+ 
Sbjct: 120 VKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVIS 179

Query: 148 LDRVQREDAGMYQCHIE 164
           +     E +G Y C ++
Sbjct: 180 VKNASSEYSGTYSCTVQ 196

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 48.9 bits (116), Expect = 6e-07
 Identities = 16/94 (17%), Positives = 27/94 (28%), Gaps = 8/94 (8%)

Query: 5   IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS------- 57
           + V    S           ++G+  +L C      L     W K        +       
Sbjct: 116 LTVLVKPSGTRCFV-DGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMT 174

Query: 58  DEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV 91
             V+ +     E +G Y C V     S Q   ++
Sbjct: 175 SPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRL 208

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 80.6 bits (198), Expect = 5e-18
 Identities = 33/209 (15%), Positives = 59/209 (28%), Gaps = 33/209 (15%)

Query: 11  LSIEMSPSGQVVVDVGHRIELHCRVS--PKRLSSAKAWLKD------GLVLRRNSDEVLV 62
             IE +P  + +  +G  + L C  +       S   W         G V    +   L 
Sbjct: 1   FKIETTPESRYLAQIGDSVSLTCSTTGCESPFFS---WRTQIDSPLNGKVTNEGTTSTLT 57

Query: 63  LDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVS- 121
           ++ V   +   Y C  + +    +   QV +     +        ++ G  I + C V+ 
Sbjct: 58  MNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVAD 117

Query: 122 --PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIH 179
             P         LK   +++                         D K     S E+   
Sbjct: 118 VYPFDRLEID-LLKGDHLMKSQEFL-----------------EDADRKSLETKSLEVTFT 159

Query: 180 QVDESDRYRSYQCRGVNKLTGASLLSVNR 208
            V E D  +   CR    +     +   R
Sbjct: 160 PVIE-DIGKVLVCRAKLHIDEMDSVPTVR 187

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 69.4 bits (169), Expect = 4e-14
 Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 31/142 (21%)

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQ-DSPVEESDRIQRIGSSLSISHVEESDSGVWNCV 292
            +  +SV L CS  G   P   W  Q DSP+      +   S+L+++ V   +   + C 
Sbjct: 13  AQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCT 72

Query: 293 ANNSEGQD--KMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKK 350
           A     +    +Q+ I        +  SG L                             
Sbjct: 73  ATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEA--------------------------- 105

Query: 351 DESVILPCSAQG-NPLPTIKYR 371
            + + + CS     P   ++  
Sbjct: 106 GKPITVKCSVADVYPFDRLEID 127

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 62.1 bits (150), Expect = 1e-11
 Identities = 27/240 (11%), Positives = 59/240 (24%), Gaps = 72/240 (30%)

Query: 98  VEIASSNQVVVDVGHRIELHCRVS--PKRLSSAKAWLKD------GLVLRRNSDEVLVLD 149
           +E    ++ +  +G  + L C  +       S   W         G V    +   L ++
Sbjct: 3   IETTPESRYLAQIGDSVSLTCSTTGCESPFFS---WRTQIDSPLNGKVTNEGTTSTLTMN 59

Query: 150 RVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRG 209
            V   +   Y C        +    ++ I+   +                          
Sbjct: 60  PVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDP------------------------ 95

Query: 210 RLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN---PLPTIKWYKQDSPVEES 266
                            E H    ++  + + + CS           I   K D  ++  
Sbjct: 96  -----------------EIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQ 138

Query: 267 DRIQRI--------GSSLSISHVEESDSGVWNCVANNSEG---------QDKMQLFIQYA 309
           + ++             ++ + V E    V  C A              Q   +L +  +
Sbjct: 139 EFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYIS 198

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 77.3 bits (191), Expect = 6e-18
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 7/81 (8%)

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS-----SLSISHVEESDSGV 288
           V++ + VI+    QG P P + W +   PV    R     +      L I   E  D+G 
Sbjct: 17  VREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGF 76

Query: 289 WNCVANNSEGQD--KMQLFIQ 307
           + C A N  G    + +L ++
Sbjct: 77  YTCKAVNEYGARQCEARLEVR 97

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 19/90 (21%)

Query: 21 VVVDVGHRIELHCRVS----PKRLSSAKAWLKDGLVLRRNSDEV----------LVLDRV 66
            V  G  + +  RV     P       +WL++   +R +              L +   
Sbjct: 15 QSVREGQDVIMSIRVQGEPKPVV-----SWLRNRQPVRPDQRRFAEEAEGGLCRLRILAA 69

Query: 67 QREDAGMYQCHVSADDDSAQMSAQVILGGE 96
          +R DAG Y C    +  + Q  A++ + GE
Sbjct: 70 ERGDAGFYTCKAVNEYGARQCEARLEVRGE 99

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 43.4 bits (103), Expect = 6e-06
 Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 19/70 (27%)

Query: 106 VVVDVGHRIELHCRVS----PKRLSSAKAWLKDGLVLRRNSDEV----------LVLDRV 151
             V  G  + +  RV     P       +WL++   +R +              L +   
Sbjct: 15  QSVREGQDVIMSIRVQGEPKPVV-----SWLRNRQPVRPDQRRFAEEAEGGLCRLRILAA 69

Query: 152 QREDAGMYQC 161
           +R DAG Y C
Sbjct: 70  ERGDAGFYTC 79

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 80.3 bits (198), Expect = 9e-18
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 8/89 (8%)

Query: 226 FEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-------GSSLSI 278
            +    +   +   V + C     P  TI W++    +  S+    I        S L +
Sbjct: 22  LQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNY-SNIKIYNTPSASYLEV 80

Query: 279 SHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
           +   E+D G +NC A N  GQ+ ++  + 
Sbjct: 81  TPDSENDFGNYNCTAVNRIGQESLEFILV 109

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 12/83 (14%)

Query: 21  VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE-----------VLVLDRVQRE 69
           V    G+++ + C V     ++   W +DG +L  ++              L +      
Sbjct: 28  VYTWEGNQVNITCEVFAYPSATIS-WFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSEN 86

Query: 70  DAGMYQCHVSADDDSAQMSAQVI 92
           D G Y C          +   ++
Sbjct: 87  DFGNYNCTAVNRIGQESLEFILV 109

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 12/77 (15%)

Query: 99  EIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE-----------VLV 147
           ++     V    G+++ + C V     ++   W +DG +L  ++              L 
Sbjct: 21  KLQGPVAVYTWEGNQVNITCEVFAYPSATIS-WFRDGQLLPSSNYSNIKIYNTPSASYLE 79

Query: 148 LDRVQREDAGMYQCHIE 164
           +      D G Y C   
Sbjct: 80  VTPDSENDFGNYNCTAV 96

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 77.5 bits (191), Expect = 9e-18
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 11/89 (12%)

Query: 230 RILNVKKDESVI---LPCSAQGNPLPTIKWYKQDSPVEESDRIQ--------RIGSSLSI 278
           R++++++ E  +   +    +GNP PT+ W     P+ ES  I              L  
Sbjct: 10  RVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLF 69

Query: 279 SHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
           +     ++G +  +A N  G     +   
Sbjct: 70  NKPTHYNNGNYTLIAKNPLGTANQTINGH 98

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 11/86 (12%), Positives = 23/86 (26%), Gaps = 22/86 (25%)

Query: 25  VGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSD-------------EVLVLDRVQR 68
           +     +   V   P   L     WL +G  LR +                 L+ ++   
Sbjct: 19  LRLEHCIEFVVRGNPPPTLH----WLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTH 74

Query: 69  EDAGMYQCHVS--ADDDSAQMSAQVI 92
            + G Y           +  ++   +
Sbjct: 75  YNNGNYTLIAKNPLGTANQTINGHFL 100

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 22/79 (27%)

Query: 99  EIASSNQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSD------------ 143
            + S  +  + + H IE    V   P   L     WL +G  LR +              
Sbjct: 10  RVVSLEEPELRLEHCIE--FVVRGNPPPTLH----WLHNGQPLRESKIIHVEYYQEGEIS 63

Query: 144 -EVLVLDRVQREDAGMYQC 161
              L+ ++    + G Y  
Sbjct: 64  EGCLLFNKPTHYNNGNYTL 82

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 79.7 bits (196), Expect = 1e-17
 Identities = 36/222 (16%), Positives = 61/222 (27%), Gaps = 63/222 (28%)

Query: 100 IASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV-------------- 145
            A      VDVG  + L C    +  +  +  ++  L    N   +              
Sbjct: 6   TAPKEVYTVDVGSSVSLECDFDRRECTELE-GIRASLQKVENDTSLQSERATLLEEQLPL 64

Query: 146 ----LVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGA 201
                 +  VQ  D+G Y+C +  G         + +                       
Sbjct: 65  GKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKA--------------------- 103

Query: 202 SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDS 261
                                + M    RIL V     V L C A+G PL  + W     
Sbjct: 104 ---------------------SYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSV 142

Query: 262 PVEESDRIQRIG--SSLSISHVEESDSGVWNCVANNSEGQDK 301
           P   S      G     S+  ++   S  ++C+  N+  ++ 
Sbjct: 143 PANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKEL 184

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 69.7 bits (170), Expect = 4e-14
 Identities = 27/176 (15%), Positives = 53/176 (30%), Gaps = 34/176 (19%)

Query: 17  PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV---------------- 60
           P     VDVG  + L C    +  +  +  ++  L    N   +                
Sbjct: 8   PKEVYTVDVGSSVSLECDFDRRECTELE-GIRASLQKVENDTSLQSERATLLEEQLPLGK 66

Query: 61  --LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHC 118
               +  VQ  D+G Y+C V            V +    + I +    V      ++L C
Sbjct: 67  ALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVP-GTGEVQLTC 125

Query: 119 RVS--PK-RLSSAKAWLKDGLVL----RRNSDEVLVLD---RVQREDAGMYQCHIE 164
           +    P   +S    W    +       R  + +  +    R++ + +  + C   
Sbjct: 126 QARGYPLAEVS----WQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFW 177

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 67.8 bits (165), Expect = 2e-13
 Identities = 26/147 (17%), Positives = 43/147 (29%), Gaps = 39/147 (26%)

Query: 238 ESVILPCSAQGNPLPTIKWYKQDSPVEE-------------SDRIQRIGSSLSISHVEES 284
            SV L C         ++  +      E              +++    +   I  V+  
Sbjct: 18  SSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVR 77

Query: 285 DSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHR 344
           DSG + C+       D   L ++                            A+ M    R
Sbjct: 78  DSGQYRCLVICGAAWDYKYLTVKV--------------------------KASYMRIDTR 111

Query: 345 ILNVKKDESVILPCSAQGNPLPTIKYR 371
           IL V     V L C A+G PL  + ++
Sbjct: 112 ILEVPGTGEVQLTCQARGYPLAEVSWQ 138

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 80.3 bits (197), Expect = 2e-17
 Identities = 36/235 (15%), Positives = 67/235 (28%), Gaps = 43/235 (18%)

Query: 103 SNQVVVDVGHRIELHCRVSPKRLSSAK--AWLKDGLVLRR-----------NSDEVLVLD 149
             +V V  G  +EL C       +     +WLK     R                  V  
Sbjct: 9   HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVES 68

Query: 150 RVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRG 209
              +E  G +           L++  L +  V   D  R Y C+ V + +  +   ++  
Sbjct: 69  DSYKESFGDFLGRASVAN---LAAPTLRLTHVHPQDGGR-YWCQ-VAQWSIRTEFGLDAK 123

Query: 210 RLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD-- 267
            + L       S         ++ V +   + + C         + WY   +  E  +  
Sbjct: 124 SVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETG 183

Query: 268 ----------------------RIQRIGS-SLSISHVEESDSGVWNCVANNSEGQ 299
                                 R    G+ +L I   + +D+G   C     +G+
Sbjct: 184 TYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGE 238

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 66.5 bits (161), Expect = 1e-12
 Identities = 35/237 (14%), Positives = 64/237 (27%), Gaps = 52/237 (21%)

Query: 9   SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAK--AWLKDGLVLR------------ 54
           S +++  +   +V V  G  +EL C       +     +WLK     R            
Sbjct: 1   SIMTVR-TTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQ 59

Query: 55  --------------------------RNSDEVLVLDRVQREDAGMYQCHVSADDDS---- 84
                                       +   L L  V  +D G Y C V+         
Sbjct: 60  GEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFG 119

Query: 85  -AQMSAQVILGGEL----VEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR 139
               S  + + G      V ++++  V VD G+ I + C  +    ++   W        
Sbjct: 120 LDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVT-WYTGPTFFE 178

Query: 140 RNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVN 196
                       + +    +      G+     +  L+I     +D  R   C    
Sbjct: 179 NYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGR-VWCELAT 234

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 63.8 bits (154), Expect = 7e-12
 Identities = 25/174 (14%), Positives = 43/174 (24%), Gaps = 52/174 (29%)

Query: 232 LNVKKDESVILPCS---AQGNPLPTIKWYKQDSPVEESDRIQRI---------------- 272
           + V    +V LPCS   A     P I W K  SP   +   +                  
Sbjct: 12  VEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSY 71

Query: 273 -----------------GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHM 315
                              +L ++HV   D G + C       + +              
Sbjct: 72  KESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFG----------LD 121

Query: 316 LSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
             S  L +      N   +S         ++ V +   + + C         + 
Sbjct: 122 AKSVVLKVTGHTPSNNVHVS------TAEVVQVDEGNDITMTCPCTDCANANVT 169

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 42.2 bits (98), Expect = 1e-04
 Identities = 15/120 (12%), Positives = 28/120 (23%), Gaps = 31/120 (25%)

Query: 3   LFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV-- 60
                  S ++ +S +  V VD G+ I + C  +    ++   W                
Sbjct: 128 KVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVT-WYTGPTFFENYETGTYQ 186

Query: 61  ----------------------------LVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
                                       LV+   +  DAG   C ++             
Sbjct: 187 PLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSST 246

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 75.8 bits (187), Expect = 2e-17
 Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 6/82 (7%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSG 287
             V  D        A G P PT  W K    + +  + +      G  L I   + SDSG
Sbjct: 16  TTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSG 75

Query: 288 VWNCVANNSEGQD--KMQLFIQ 307
           ++ C   NS G      +L I+
Sbjct: 76  LYTCTVKNSAGSVSSSCKLTIK 97

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 16/84 (19%)

Query: 21 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE---------VLVLDRVQR 68
            V      +   + +  P+        W KDG  + +              L + +   
Sbjct: 16 TTVSSDSVAKFAVKATGEPRPTAI----WTKDGKAITQGGKYKLSEDKGGFFLEIHKTDT 71

Query: 69 EDAGMYQCHVSADDDSAQMSAQVI 92
           D+G+Y C V     S   S ++ 
Sbjct: 72 SDSGLYTCTVKNSAGSVSSSCKLT 95

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 16/68 (23%)

Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE---------VLVLDRVQR 153
             V      +   + +  P+        W KDG  + +              L + +   
Sbjct: 16  TTVSSDSVAKFAVKATGEPRPTAI----WTKDGKAITQGGKYKLSEDKGGFFLEIHKTDT 71

Query: 154 EDAGMYQC 161
            D+G+Y C
Sbjct: 72  SDSGLYTC 79

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 75.2 bits (185), Expect = 4e-17
 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 9/87 (10%)

Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR---------IGSSLSISH 280
            + +   D    +P + +GNP P ++W+   + + ES  I               L + +
Sbjct: 9   FLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDN 68

Query: 281 VEESDSGVWNCVANNSEGQDKMQLFIQ 307
               ++G +  +A N  G+D+ Q+   
Sbjct: 69  PTHMNNGDYTLIAKNEYGKDEKQISAH 95

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 17/89 (19%), Positives = 24/89 (26%), Gaps = 23/89 (25%)

Query: 23 VDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE--------------VLVLDR 65
              H   +   V   PK  L     W  +G +L  +                  L LD 
Sbjct: 13 PTSDHHWCIPFTVKGNPKPALQ----WFYNGAILNESKYICTKIHVTNHTEYHGCLQLDN 68

Query: 66 VQREDAGMYQCHVS--ADDDSAQMSAQVI 92
              + G Y          D  Q+SA  +
Sbjct: 69 PTHMNNGDYTLIAKNEYGKDEKQISAHFM 97

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 37.4 bits (87), Expect = 9e-04
 Identities = 13/74 (17%), Positives = 19/74 (25%), Gaps = 21/74 (28%)

Query: 108 VDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE--------------VLVLDR 150
               H   +   V   PK  L     W  +G +L  +                  L LD 
Sbjct: 13  PTSDHHWCIPFTVKGNPKPALQ----WFYNGAILNESKYICTKIHVTNHTEYHGCLQLDN 68

Query: 151 VQREDAGMYQCHIE 164
               + G Y    +
Sbjct: 69  PTHMNNGDYTLIAK 82

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 75.1 bits (185), Expect = 6e-17
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD---RIQRIGSSLSISHVEESDSGV 288
              K  E + L    QG P P + W K  +P++ S    R     +   +     SDSG 
Sbjct: 34  YIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGE 93

Query: 289 WNCVANNSEGQDKMQLFIQ 307
           +         +D   + I+
Sbjct: 94  YELSVQIENMKDTATIRIR 112

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 50.5 bits (121), Expect = 4e-08
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 17/101 (16%)

Query: 5   IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLR------R 55
           I     + +        +  VG ++ L       P+ ++     W K G  L       R
Sbjct: 18  IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVV----WTKGGAPLDTSRVHVR 73

Query: 56  NSDE--VLVLDRVQREDAGMYQCHVS--ADDDSAQMSAQVI 92
            SD   V  + +  R D+G Y+  V      D+A +  +V+
Sbjct: 74  TSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVV 114

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 15/72 (20%)

Query: 104 NQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLR------RNSDE--VLVLDRVQ 152
              +  VG ++ L       P+ ++     W K G  L       R SD   V  + +  
Sbjct: 32  QTYIRKVGEQLNLVVPFQGKPRPQVV----WTKGGAPLDTSRVHVRTSDFDTVFFVRQAA 87

Query: 153 REDAGMYQCHIE 164
           R D+G Y+  ++
Sbjct: 88  RSDSGEYELSVQ 99

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 74.6 bits (184), Expect = 7e-17
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 7/95 (7%)

Query: 220 LSAAKMFEKH-RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS---- 274
           L  A       R   V   ++     + Q  P   +KWY     ++ES +I    +    
Sbjct: 5   LDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVL 64

Query: 275 SLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQ 307
           +L I      DSG +  V  N +G+      L + 
Sbjct: 65  TLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 16/84 (19%)

Query: 21 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQR 68
            V  G        V   P   +     W  +G+ L+ +S            L +     
Sbjct: 18 HRVPCGQNTRFILNVQSKPTAEVK----WYHNGVELQESSKIHYTNTSGVLTLEILDCHT 73

Query: 69 EDAGMYQCHVSADDDSAQMSAQVI 92
          +D+G Y+   +     A   A + 
Sbjct: 74 DDSGTYRAVCTNYKGEASDYATLD 97

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 16/68 (23%)

Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQR 153
             V  G        V   P   +     W  +G+ L+ +S            L +     
Sbjct: 18  HRVPCGQNTRFILNVQSKPTAEVK----WYHNGVELQESSKIHYTNTSGVLTLEILDCHT 73

Query: 154 EDAGMYQC 161
           +D+G Y+ 
Sbjct: 74  DDSGTYRA 81

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 77.0 bits (189), Expect = 8e-17
 Identities = 20/196 (10%), Positives = 45/196 (22%), Gaps = 57/196 (29%)

Query: 113 RIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS 172
           R+                  +        +   LV+        G Y C ++ G+  +  
Sbjct: 42  RMHHDVIFIEWPFRGFFDIHRSA------NTFFLVVTAANISHDGNYLCRMKLGETEVTK 95

Query: 173 SGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKH-RI 231
              L +                                                  H   
Sbjct: 96  QEHLSVV------------------------------------------KPLTLSVHSER 113

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQD----SPVEESDRIQRIGS-SLSIS---HVEE 283
                   + + C+    P P ++W   +    +P   +  + +    SLS++    + +
Sbjct: 114 SQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPK 173

Query: 284 SDSGVWNCVANNSEGQ 299
                  CV  N + +
Sbjct: 174 PWHLPVTCVGKNDKEE 189

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 73.1 bits (179), Expect = 2e-15
 Identities = 20/155 (12%), Positives = 42/155 (27%), Gaps = 19/155 (12%)

Query: 19  GQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHV 78
           G+  V +G R+                  +        +   LV+        G Y C +
Sbjct: 34  GEEQVLIG-RMHHDVIFIEWPFRGFFDIHRSA------NTFFLVVTAANISHDGNYLCRM 86

Query: 79  SADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVS-----------PKRLSS 127
              +        + +   L     S +        + + C V+           P+ +  
Sbjct: 87  KLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEP 146

Query: 128 AKAWLKDGLVLRRN-SDEVLVLDRVQREDAGMYQC 161
           A      G++  ++ S  V V   + +       C
Sbjct: 147 APTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTC 181

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 58.9 bits (142), Expect = 2e-10
 Identities = 19/156 (12%), Positives = 33/156 (21%), Gaps = 51/156 (32%)

Query: 238 ESVILPCSAQ---GNPLPTIKWYK-------------------QDSPVEESDRIQRIGS- 274
           E V L    +     P   + W+K                    + P      I R  + 
Sbjct: 7   ERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANT 66

Query: 275 -SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRL 333
             L ++    S  G + C     E                 +     L +          
Sbjct: 67  FFLVVTAANISHDGNYLCRMKLGET---------------EVTKQEHLSVV--------- 102

Query: 334 LSAAKMFEKH-RILNVKKDESVILPCSAQGNPLPTI 368
                    H           + + C+    P P +
Sbjct: 103 --KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHV 136

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 13/97 (13%)

Query: 2   QLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS-----------PKRLSSAKAWLKDG 50
           Q  + V   L++ +             + + C V+           P+ +  A      G
Sbjct: 96  QEHLSVVKPLTLSVHSERSQFP-DFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGG 154

Query: 51  LVLRRN-SDEVLVLDRVQREDAGMYQCHVSADDDSAQ 86
           ++  ++ S  V V   + +       C    D + A 
Sbjct: 155 VMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAH 191

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 73.8 bits (182), Expect = 1e-16
 Identities = 20/82 (24%), Positives = 26/82 (31%), Gaps = 6/82 (7%)

Query: 225 MFEKH-RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GSSLSI 278
              +  +   V +           G P P  +WYK    +E SDRI           L I
Sbjct: 7   KIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVI 66

Query: 279 SHVEESDSGVWNCVANNSEGQD 300
             V   DS      A N  G+ 
Sbjct: 67  RDVTGEDSASIMVKAINIAGET 88

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 17/69 (24%)

Query: 21 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE----------VLVLDRVQ 67
            V  G       RV   P         W K+G+ + R+              LV+  V 
Sbjct: 15 QTVGQGSDAHFRVRVVGKPDPECE----WYKNGVKIERSDRIYWYWPEDNVCELVIRDVT 70

Query: 68 REDAGMYQC 76
           ED+     
Sbjct: 71 GEDSASIMV 79

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 17/69 (24%)

Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE----------VLVLDRVQ 152
             V  G       RV   P         W K+G+ + R+              LV+  V 
Sbjct: 15  QTVGQGSDAHFRVRVVGKPDPECE----WYKNGVKIERSDRIYWYWPEDNVCELVIRDVT 70

Query: 153 REDAGMYQC 161
            ED+     
Sbjct: 71  GEDSASIMV 79

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 77.0 bits (189), Expect = 1e-16
 Identities = 31/225 (13%), Positives = 71/225 (31%), Gaps = 36/225 (16%)

Query: 100 IASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMY 159
               +  VV+ G  + + C+         +  L   +V     D+ ++      ED  + 
Sbjct: 5   TVPKDLYVVEYGSNMTIECKFPV----EKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQ 60

Query: 160 QCHIEDG-----KYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214
                           L +  L I  V   D    Y+C         S    +  R+++ 
Sbjct: 61  HSSYRQRARLLKDQLSLGNAALQITDVKLQDA-GVYRCM-------ISYGGADYKRITVK 112

Query: 215 ENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQD----------SPVE 264
               + +      +  ++         L C A+G P   + W   D          +  +
Sbjct: 113 ----VNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSK 168

Query: 265 ESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDK--MQLFIQ 307
             +++  + S+L I+    + + ++ C     + ++    +L I 
Sbjct: 169 REEKLFNVTSTLRIN---TTTNEIFYCTFRRLDPEENHTAELVIP 210

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 63.1 bits (153), Expect = 9e-12
 Identities = 34/208 (16%), Positives = 61/208 (29%), Gaps = 49/208 (23%)

Query: 17  PSGQVVVDVGHRIELHCRVSPKRLSSAK----AWLKDG--LVLRRNSDEV---------- 60
           P    VV+ G  + + C+   ++          W  +   ++   + +E           
Sbjct: 7   PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQ 66

Query: 61  ---------------LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQ 105
                          L +  V+ +DAG+Y+C +S      +    V +     +I     
Sbjct: 67  RARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYK-RITVKVNAPYNKINQRIL 125

Query: 106 VVVDVGHRIELHCRVS--PKRLSSAKAWLK-DGLVLRRNSDEVLVLD-----------RV 151
           VV  V    EL C+    PK       W   D  VL   +                  R+
Sbjct: 126 VVDPVTSEHELTCQAEGYPKAEVI---WTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRI 182

Query: 152 QREDAGMYQCHIEDGKYHMLSSGELIIH 179
                 ++ C           + EL+I 
Sbjct: 183 NTTTNEIFYCTFRRLDPEENHTAELVIP 210

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 47.3 bits (112), Expect = 2e-06
 Identities = 17/166 (10%), Positives = 46/166 (27%), Gaps = 55/166 (33%)

Query: 234 VKKDESVILPCSAQGNPLP-----TIKWYKQDSPVE----------------------ES 266
           V+   ++ + C              + W  +D  +                         
Sbjct: 13  VEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLK 72

Query: 267 DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQ-DKMQLFIQYAHGKYHMLSSGELIIHQ 325
           D++    ++L I+ V+  D+GV+ C+ +       ++ +                     
Sbjct: 73  DQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITV--------------------- 111

Query: 326 VDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371
                 ++ +      +  ++         L C A+G P   + + 
Sbjct: 112 ------KVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWT 151

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 73.6 bits (181), Expect = 1e-16
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVA 293
           V    +V L C     P P I W K   P+            L +  +   D G ++CVA
Sbjct: 22  VAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP-----SPVLILPEIGPQDQGTYSCVA 76

Query: 294 NNSEGQDK 301
            +S    +
Sbjct: 77  THSSHGPQ 84

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 63.2 bits (154), Expect = 7e-13
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 8/85 (9%)

Query: 12 SIEMSPSGQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQR 68
           + + P G  V   G  + L C V      ++     W+KDG+ L      VL+L  +  
Sbjct: 12 QLVVEPEGGAVA-PGGTVTLTCEVPAQPSPQIH----WMKDGVPLPLPPSPVLILPEIGP 66

Query: 69 EDAGMYQCHVSADDDSAQMSAQVIL 93
          +D G Y C  +      Q S  V +
Sbjct: 67 QDQGTYSCVATHSSHGPQESRAVSI 91

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 106 VVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 161
             V  G  + L C V      ++     W+KDG+ L      VL+L  +  +D G Y C
Sbjct: 20  GAVAPGGTVTLTCEVPAQPSPQIH----WMKDGVPLPLPPSPVLILPEIGPQDQGTYSC 74

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 76.5 bits (187), Expect = 1e-16
 Identities = 41/218 (18%), Positives = 72/218 (33%), Gaps = 31/218 (14%)

Query: 90  QVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE--VLV 147
           Q I G  LV++    +        + L C    K ++    W KDG ++   +++     
Sbjct: 2   QSIKGNHLVKVYDYQE-----DGSVLLTCDAEAKNIT----WFKDGKMIGFLTEDKKKWN 52

Query: 148 LDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVN 207
           L    ++  GMYQC     K   L      +   D++ +  + +               N
Sbjct: 53  LGSNAKDPRGMYQCKGSQNKSKPLQV-YYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGN 111

Query: 208 RGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD 267
                +T+    +S +               +VIL C     P   I W   D  +   +
Sbjct: 112 EEMGGITQTPYKVSIS-------------GTTVILTCPQ--YPGSEILWQHNDKNIGGDE 156

Query: 268 RIQRI---GSSLSISHV-EESDSGVWNCVANNSEGQDK 301
             + I      LS+    E   SG + C    S+ +D 
Sbjct: 157 DDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDA 194

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 62.2 bits (150), Expect = 2e-11
 Identities = 31/193 (16%), Positives = 54/193 (27%), Gaps = 50/193 (25%)

Query: 18  SGQVVVDV-----GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE--VLVLDRVQRED 70
            G  +V V        + L C    K ++    W KDG ++   +++     L    ++ 
Sbjct: 5   KGNHLVKVYDYQEDGSVLLTCDAEAKNIT----WFKDGKMIGFLTEDKKKWNLGSNAKDP 60

Query: 71  AGMYQC---------------------------HVSADDDSAQMSAQVILGGELVEIASS 103
            GMYQC                                              E+  I  +
Sbjct: 61  RGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQT 120

Query: 104 NQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQRE 154
              V   G  + L C   P    S   W  +   +  + D          + + +  + E
Sbjct: 121 PYKVSISGTTVILTCPQYPG---SEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELE 177

Query: 155 DAGMYQCHIEDGK 167
            +G Y C+    K
Sbjct: 178 QSGYYVCYPRGSK 190

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 59.1 bits (142), Expect = 2e-10
 Identities = 21/154 (13%), Positives = 47/154 (30%), Gaps = 19/154 (12%)

Query: 224 KMFEKHRILNVKKDE---SVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISH 280
           +  + + ++ V   +   SV+L C         I W+K    +      ++     ++  
Sbjct: 2   QSIKGNHLVKVYDYQEDGSVLLTC---DAEAKNITWFKDGKMIGFLTEDKKK---WNLGS 55

Query: 281 VEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMF 340
             +   G++ C  + ++ +    L + Y  G                + + +   +    
Sbjct: 56  NAKDPRGMYQCKGSQNKSKP---LQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNE 112

Query: 341 EKHRILNVKKD-----ESVILPCSAQGNPLPTIK 369
           E   I            +VIL C     P   I 
Sbjct: 113 EMGGITQTPYKVSISGTTVILTCPQ--YPGSEIL 144

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 12/83 (14%)

Query: 6   QVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD------- 58
              +     ++ +   V   G  + L C   P    S   W  +   +  + D       
Sbjct: 108 SDGNEEMGGITQTPYKVSISGTTVILTCPQYPG---SEILWQHNDKNIGGDEDDKNIGSD 164

Query: 59  --EVLVLDRVQREDAGMYQCHVS 79
              + + +  + E +G Y C+  
Sbjct: 165 EDHLSLKEFSELEQSGYYVCYPR 187

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 73.3 bits (180), Expect = 2e-16
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 230 RILNVKKDESVILPCSAQ-GNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGV 288
           R  +V+    V   C+A+  +P  T+ W +  +    S  +   G  L+I +V+ SD+G 
Sbjct: 18  RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGI-LTIRNVQPSDAGT 76

Query: 289 WNCVANNSEGQDKMQLFIQ 307
           + C  +N    D+    + 
Sbjct: 77  YVCTGSNMFAMDQGTATLH 95

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 12/88 (13%)

Query: 13 IEMSPSGQVVVDVGHRIELHCRV---SPK-RLSSAKAWLKDGLVL----RRNSDEVLVLD 64
          + +       V  G  +   C     SP   L     W +           + + +L + 
Sbjct: 12 VTVEEQRSQSVRPGADVTFICTAKSKSPAYTLV----WTRLHNGKLPSRAMDFNGILTIR 67

Query: 65 RVQREDAGMYQCHVSADDDSAQMSAQVI 92
           VQ  DAG Y C  S      Q +A + 
Sbjct: 68 NVQPSDAGTYVCTGSNMFAMDQGTATLH 95

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 47.1 bits (112), Expect = 4e-07
 Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 12/73 (16%)

Query: 97  LVEIASSNQVVVDVGHRIELHCRV---SPK-RLSSAKAWLKDGLVL----RRNSDEVLVL 148
           +V +       V  G  +   C     SP   L     W +           + + +L +
Sbjct: 11  MVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLV----WTRLHNGKLPSRAMDFNGILTI 66

Query: 149 DRVQREDAGMYQC 161
             VQ  DAG Y C
Sbjct: 67  RNVQPSDAGTYVC 79

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 76.4 bits (187), Expect = 2e-16
 Identities = 31/224 (13%), Positives = 64/224 (28%), Gaps = 58/224 (25%)

Query: 105 QVVVDVGHRIELHCRVSP-------KRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAG 157
            +  +    + + C  S              K ++ DG  +  +S +   +       AG
Sbjct: 18  YITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAG 77

Query: 158 MYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENK 217
           M  C  +       S   +++                   L+ +  + ++ G        
Sbjct: 78  MVFCEAKINDESYQSIMYIVVVVGYRIYDV---------VLSPSHGIELSVG-------- 120

Query: 218 RLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP--TIKWYKQDSPVEESDRIQR---- 271
                               E ++L C+A+          W    S  +    + R    
Sbjct: 121 --------------------EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKT 160

Query: 272 --------IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
                     S+L+I  V  SD G++ C A++     K   F++
Sbjct: 161 QSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 204

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 72.1 bits (176), Expect = 6e-15
 Identities = 31/189 (16%), Positives = 61/189 (32%), Gaps = 29/189 (15%)

Query: 20  QVVVDVGHRIELHCRVSP-------KRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAG 72
            +  +    + + C  S              K ++ DG  +  +S +   +       AG
Sbjct: 18  YITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAG 77

Query: 73  MYQCHVSADDDSAQMSAQVILGGEL----VEIASSNQVVVDVGHRIELHCRVSPKRLSSA 128
           M  C    +D+S Q    +++        V ++ S+ + + VG ++ L+C    +     
Sbjct: 78  MVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGI 137

Query: 129 K-AWLKDGLVLRRNSDE-----------------VLVLDRVQREDAGMYQCHIEDGKYHM 170
              W       +                       L +D V R D G+Y C    G    
Sbjct: 138 DFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK 197

Query: 171 LSSGELIIH 179
            +S  + +H
Sbjct: 198 KNSTFVRVH 206

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 55.6 bits (133), Expect = 3e-09
 Identities = 19/144 (13%), Positives = 44/144 (30%), Gaps = 26/144 (18%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSG 287
           +   K+++V++PC         +    +           RI        +I     S +G
Sbjct: 19  ITENKNKTVVIPCLGS-ISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAG 77

Query: 288 VWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILN 347
           +  C A  ++   +                S   I+  V  +   +     +      + 
Sbjct: 78  MVFCEAKINDESYQ----------------SIMYIVVVVGYRIYDV-----VLSPSHGIE 116

Query: 348 VKKDESVILPCSAQGNPLPTIKYR 371
           +   E ++L C+A+      I + 
Sbjct: 117 LSVGEKLVLNCTARTELNVGIDFN 140

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 50.6 bits (120), Expect = 2e-07
 Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 18/108 (16%)

Query: 3   LFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSDE-- 59
           + +       + +SPS  + + VG ++ L+C    +        W       +       
Sbjct: 97  VVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNR 156

Query: 60  ---------------VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
                           L +D V R D G+Y C  S+   + + S  V 
Sbjct: 157 DLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 204

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 72.4 bits (178), Expect = 3e-16
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 233 NVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCV 292
            +    +++L C A G+P+P  +W+K + P+    +         + +V+    G + C 
Sbjct: 14  KLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK-----KLYMVPYVDLEHQGTYWCH 68

Query: 293 ANNSEGQ 299
             N    
Sbjct: 69  VYNDRDS 75

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 65.4 bits (160), Expect = 9e-14
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 8/87 (9%)

Query: 9  SSLSIEMSPSGQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDR 65
          S L I + P+ Q ++  G  + L C               W K+ L L   + ++ ++  
Sbjct: 2  SKLQICVEPTSQKLM-PGSTLVLQCVAVGSPIPHYQ----WFKNELPLTHETKKLYMVPY 56

Query: 66 VQREDAGMYQCHVSADDDSAQMSAQVI 92
          V  E  G Y CHV  D DS       I
Sbjct: 57 VDLEHQGTYWCHVYNDRDSQDSKKVEI 83

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 57.3 bits (139), Expect = 7e-11
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 7/62 (11%)

Query: 106 VVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
             +  G  + L C               W K+ L L   + ++ ++  V  E  G Y CH
Sbjct: 13  QKLMPGSTLVLQCVAVGSPIPHYQ----WFKNELPLTHETKKLYMVPYVDLEHQGTYWCH 68

Query: 163 IE 164
           + 
Sbjct: 69  VY 70

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 73.3 bits (180), Expect = 7e-16
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 20/114 (17%)

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GSSLSISHVEESDSGV 288
           V +  +    C  +G P P + W+K D+PV+ES   Q         SL+IS V   D   
Sbjct: 53  VVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAK 112

Query: 289 WNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEK 342
           + C A NS G+                  + EL++  + ++ +      +  E+
Sbjct: 113 YTCKAVNSLGEAT---------------CTAELLVETMGKEGEGEGEGEEDEEE 151

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 19/86 (22%)

Query: 21  VVVDVGHRIELHCRVS----PKRLSSAKAWLKDGLVLRRNSDE----------VLVLDRV 66
           + V  G      C+V     P+       W KD   ++ +              L +  V
Sbjct: 51  MEVVEGSAARFDCKVEGYPDPE-----VMWFKDDNPVKESRHFQIDYDEEGNCSLTISEV 105

Query: 67  QREDAGMYQCHVSADDDSAQMSAQVI 92
             +D   Y C        A  +A+++
Sbjct: 106 CGDDDAKYTCKAVNSLGEATCTAELL 131

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 27/115 (23%)

Query: 68  REDAGMYQCHVSADDDSAQMSAQVILGGELVEIAS-------SNQVVVDVGHRIELHCRV 120
           R+ +G         +      A +    E              +  VV+ G      C+V
Sbjct: 7   RKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVE-GSAARFDCKV 65

Query: 121 S----PKRLSSAKAWLKDGLVLRRNSDE----------VLVLDRVQREDAGMYQC 161
                P+       W KD   ++ +              L +  V  +D   Y C
Sbjct: 66  EGYPDPE-----VMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 77.1 bits (189), Expect = 7e-16
 Identities = 35/210 (16%), Positives = 68/210 (32%), Gaps = 49/210 (23%)

Query: 102 SSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 161
                 VDVG  + L C+V  + L  A  W+   L       +   L             
Sbjct: 164 QVPNASVDVGDDVLLRCQVEGRGLEQAG-WILTELEQSATVMKSGGLP------------ 210

Query: 162 HIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLS 221
                     S G  + +   + +R ++  C   N + G + +SV    ++++       
Sbjct: 211 ----------SLGLTLANVTSDLNR-KNVTCWAENDV-GRAEVSVQ---VNVSF------ 249

Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI-----------Q 270
                   ++    +     +P S  G P P+++W    S + E+  I            
Sbjct: 250 ----PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANET 305

Query: 271 RIGSSLSISHVEESDSGVWNCVANNSEGQD 300
                L ++     ++G +  +A N  GQ 
Sbjct: 306 VRHGCLRLNQPTHVNNGNYTLLAANPFGQA 335

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 65.1 bits (158), Expect = 6e-12
 Identities = 18/149 (12%), Positives = 40/149 (26%), Gaps = 32/149 (21%)

Query: 224 KMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQD---SPVEESDRIQRIGSSLSISH 280
            +  +    +V   + V+L C  +G  L    W   +   S                 + 
Sbjct: 160 TLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANV 219

Query: 281 VEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMF 340
             + +     C A N  G+ ++ + +                   V              
Sbjct: 220 TSDLNRKNVTCWAENDVGRAEVSVQV------------------NVSFPA---------- 251

Query: 341 EKHRILNVKKDESVILPCSAQGNPLPTIK 369
              ++    +     +P S  G P P+++
Sbjct: 252 -SVQLHTAVEMHHWCIPFSVDGQPAPSLR 279

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 59.0 bits (142), Expect = 7e-10
 Identities = 28/174 (16%), Positives = 44/174 (25%), Gaps = 34/174 (19%)

Query: 15  MSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV--------LVLDRV 66
                   VDVG  + L C+V  + L  A  W+   L       +          + +  
Sbjct: 162 KVQVPNASVDVGDDVLLRCQVEGRGLEQAG-WILTELEQSATVMKSGGLPSLGLTLANVT 220

Query: 67  QREDAGMYQCHVS--ADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKR 124
              +     C            +   V         AS         H   +   V  + 
Sbjct: 221 SDLNRKNVTCWAENDVGRAEVSVQVNVS------FPASVQLHTAVEMHHWCIPFSVDGQP 274

Query: 125 LSSAKAWLKDGLVLRRNS----------------DEVLVLDRVQREDAGMYQCH 162
             S + WL +G VL   S                   L L++    + G Y   
Sbjct: 275 APSLR-WLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLL 327

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 71.6 bits (176), Expect = 8e-16
 Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 7/86 (8%)

Query: 221 SAAKMFEKH-RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS----- 274
           S A  FE   +   + +   V   C   GNP P I W+K    +        I       
Sbjct: 6   SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 65

Query: 275 -SLSISHVEESDSGVWNCVANNSEGQ 299
            SL  +     D G +  +A N +G+
Sbjct: 66  CSLHTTASTLDDDGNYTIMAANPQGR 91

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 46.6 bits (111), Expect = 7e-07
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 18/86 (20%)

Query: 21 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEV-----------LVLDRV 66
            +  G  +   CRV+  PK ++     W KDG  +   SD             L     
Sbjct: 18 YKIFEGMPVTFTCRVAGNPKPKIY----WFKDGKQISPKSDHYTIQRDLDGTCSLHTTAS 73

Query: 67 QREDAGMYQCHVSADDDSAQMSAQVI 92
            +D G Y    +        + +++
Sbjct: 74 TLDDDGNYTIMAANPQGRISCTGRLM 99

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 18/93 (19%)

Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEV-----------LVLDRV 151
             +  G  +   CRV+  PK ++     W KDG  +   SD             L     
Sbjct: 18  YKIFEGMPVTFTCRVAGNPKPKIY----WFKDGKQISPKSDHYTIQRDLDGTCSLHTTAS 73

Query: 152 QREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184
             +D G Y     + +  +  +G L++  V+  
Sbjct: 74  TLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 71.3 bits (175), Expect = 1e-15
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI------GSSLSISHVEESD 285
             V + +SV L C     P P + W + +  V+ +     +        +L I  V + D
Sbjct: 25  KKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKD 84

Query: 286 SGVWNCVANNSEGQD 300
           +G +   A N  G  
Sbjct: 85  AGWYTVSAVNEAGVT 99

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 47.0 bits (112), Expect = 6e-07
 Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 18/86 (20%)

Query: 21  VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEV-----------LVLDRV 66
             V  G  ++L C++S  P  +L     W ++  +++ N+D +           L++  V
Sbjct: 25  KKVLEGDSVKLECQISAIPPPKLF----WKRNNEMVQFNTDRISLYQDNTGRVTLLIKDV 80

Query: 67  QREDAGMYQCHVSADDDSAQMSAQVI 92
            ++DAG Y      +      + ++ 
Sbjct: 81  NKKDAGWYTVSAVNEAGVTTCNTRLD 106

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 19/73 (26%)

Query: 103 SNQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEV-----------LVL 148
            ++ V++ G  ++L C++S  P  +L     W ++  +++ N+D +           L++
Sbjct: 23  QSKKVLE-GDSVKLECQISAIPPPKLF----WKRNNEMVQFNTDRISLYQDNTGRVTLLI 77

Query: 149 DRVQREDAGMYQC 161
             V ++DAG Y  
Sbjct: 78  KDVNKKDAGWYTV 90

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 70.8 bits (173), Expect = 4e-15
 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 17/97 (17%)

Query: 221 SAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG------- 273
             A   +           SV L C A G+P+P I+W+ +     +       G       
Sbjct: 20  HMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVH 79

Query: 274 ----------SSLSISHVEESDSGVWNCVANNSEGQD 300
                     S++SI  + E D+G + C A+N   ++
Sbjct: 80  IHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRN 116

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 43.9 bits (103), Expect = 9e-06
 Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 21/93 (22%)

Query: 21  VVVDVGHRIELHCRVS--PK----------RLSSAKAWLKDGLVLRRNSDE--------- 59
               VG  +ELHC     P             +   + L DG  L R             
Sbjct: 31  QQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAAS 90

Query: 60  VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
            + +D +  ED G Y+C  S D D   ++    
Sbjct: 91  TISIDTLVEEDTGTYECRASNDPDRNHLTRAPR 123

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 41.2 bits (96), Expect = 7e-05
 Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 21/78 (26%)

Query: 106 VVVDVGHRIELHCRVS--PK----------RLSSAKAWLKDGLVLRRNSDE--------- 144
               VG  +ELHC     P             +   + L DG  L R             
Sbjct: 31  QQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAAS 90

Query: 145 VLVLDRVQREDAGMYQCH 162
            + +D +  ED G Y+C 
Sbjct: 91  TISIDTLVEEDTGTYECR 108

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 71.5 bits (175), Expect = 5e-15
 Identities = 30/203 (14%), Positives = 58/203 (28%), Gaps = 34/203 (16%)

Query: 99  EIASSNQVVVDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSDEVLVLDRVQREDAG 157
           EI ++ +    +G  I L               W K       +  ++    +       
Sbjct: 2   EITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTS-----DKKKIAQFRK------- 49

Query: 158 MYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENK 217
             +   E   Y +  +G L I  +   D+   Y+    +        +V      L   +
Sbjct: 50  EKETFKEKDTYKLFKNGTLKIKHLKTDDQ-DIYKVSIYDTKGK----NVLEKIFDLKIQE 104

Query: 218 RLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLS 277
           R+        K +I       +  L C       P +  Y+    ++ S R       + 
Sbjct: 105 RV-------SKPKI--SWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQR-------VI 148

Query: 278 ISHVEESDSGVWNCVANNSEGQD 300
                 S S  + C A N   ++
Sbjct: 149 THKWTTSLSAKFKCTAGNKVSKE 171

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 59.5 bits (144), Expect = 8e-11
 Identities = 18/170 (10%), Positives = 44/170 (25%), Gaps = 25/170 (14%)

Query: 14  EMSPSGQVVVDVGHRIELHCRVSP------------KRLSSAKAWLKDGLVLRRNSDEV- 60
           E++ + +    +G  I L                         A  +      +  D   
Sbjct: 2   EITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYK 61

Query: 61  ------LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRI 114
                 L +  ++ +D  +Y+  +        +     L    ++   S   +       
Sbjct: 62  LFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDL---KIQERVSKPKISWTCINT 118

Query: 115 ELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIE 164
            L C V            +DG  L     + ++  +     +  ++C   
Sbjct: 119 TLTCEVMNGTDPELN-LYQDGKHL--KLSQRVITHKWTTSLSAKFKCTAG 165

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 56.0 bits (135), Expect = 1e-09
 Identities = 19/147 (12%), Positives = 42/147 (28%), Gaps = 43/147 (29%)

Query: 238 ESVIL--PCSAQGNPLPTIKWYKQD------------SPVEESDRIQRIGS-SLSISHVE 282
           + + L  P     + +  IKW K                 +E D  +   + +L I H++
Sbjct: 15  QDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLK 74

Query: 283 ESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEK 342
             D  ++     +++G++ ++                              L   +   K
Sbjct: 75  TDDQDIYKVSIYDTKGKNVLEKIFD--------------------------LKIQERVSK 108

Query: 343 HRILNVKKDESVILPCSAQGNPLPTIK 369
            +I       +  L C       P + 
Sbjct: 109 PKI--SWTCINTTLTCEVMNGTDPELN 133

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 69.6 bits (170), Expect = 8e-15
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 11/82 (13%)

Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR-----------IGSSLSI 278
           ++    +     +P S  G P P+++W    S + E+  I                 L +
Sbjct: 8   QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL 67

Query: 279 SHVEESDSGVWNCVANNSEGQD 300
           +     ++G +  +A N  GQ 
Sbjct: 68  NQPTHVNNGNYTLLAANPFGQA 89

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 68.4 bits (167), Expect = 2e-14
 Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 14/97 (14%)

Query: 225 MFEKHRILNVKKDESVILPCSAQGNPLP-TIKWYKQDSP----------VEESDRIQRIG 273
           +    +  +    E   + C  +  P P  I W  +++           VE     + + 
Sbjct: 16  IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVI 75

Query: 274 SSLSISHVEESD-SGVWNCVANNSEGQD--KMQLFIQ 307
           S+L+IS++  +D   ++NC A NS G D   ++L  Q
Sbjct: 76  STLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ 112

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 23/103 (22%)

Query: 100 IASSNQVVVDVGHRIELHCRVS----PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRED 155
           I+S+       G + ++ C +     P R++    W     VL   +       R     
Sbjct: 17  ISSTQTQHALHGEKGQIKCFIRSTPPPDRIA----WSWKENVLESGTS-----GRYT--- 64

Query: 156 AGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKL 198
                  +E           L I  +  +D    Y C   N  
Sbjct: 65  -------VETISTEEGVISTLTISNIVRADFQTIYNCTAWNSF 100

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 234 VKKDESVILPCSAQGNPLPT-IKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGV 288
            ++   V   C  +     T + WY     +E S++ +       + L +  + + D G 
Sbjct: 13  GEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGT 72

Query: 289 WNCVANNSEGQD--KMQLFIQ 307
           + C   N  G+D    +LF++
Sbjct: 73  YRCKVVNDYGEDSSYAELFVK 93

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 45.8 bits (109), Expect = 9e-07
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 9/81 (11%)

Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQREDA 71
           V + G  ++  C++     S+   W      L  +            +L +  + + D 
Sbjct: 11 AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDD 70

Query: 72 GMYQCHVSADDDSAQMSAQVI 92
          G Y+C V  D       A++ 
Sbjct: 71 GTYRCKVVNDYGEDSSYAELF 91

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 43.8 bits (104), Expect = 5e-06
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 9/87 (10%)

Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQREDA 156
            V + G  ++  C++     S+   W      L  +            +L +  + + D 
Sbjct: 11  AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDD 70

Query: 157 GMYQCHIEDGKYHMLSSGELIIHQVDE 183
           G Y+C + +      S  EL +  V E
Sbjct: 71  GTYRCKVVNDYGEDSSYAELFVKGVRE 97

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 71.0 bits (173), Expect = 4e-14
 Identities = 51/299 (17%), Positives = 85/299 (28%), Gaps = 45/299 (15%)

Query: 13  IEMSPSGQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE 69
             +SPS +V++  G  + + C  S   PK L       K  L+L  N+ +V  L  VQ  
Sbjct: 2   TSVSPS-KVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQ-- 58

Query: 70  DAGMYQCHVSADDDSAQMSAQVILGG--ELVEIASSNQVVVDVGHRIELHCRVS----PK 123
           +     C+ +  D  +     + +    E VE+A        VG  + L C+V       
Sbjct: 59  EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQ-PVGKNLTLRCQVEGGAPRA 117

Query: 124 RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDE 183
            L+     L+    L+R                                +       V  
Sbjct: 118 NLTVV--LLRGEKELKREP-------------------------AVGEPAEVTTTVLVRR 150

Query: 184 SDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILP 243
                ++ CR    L    L               +L A         + ++ D    + 
Sbjct: 151 DHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRV-LEVDTQGTVV 209

Query: 244 CSAQGN-PLPTIKWYKQDSPVEESDRIQRIGSSLS---ISHVEESDSGVWNCVANNSEG 298
           CS  G  P+   + +        +  +     S S      V   D G          G
Sbjct: 210 CSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILG 268

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 43.7 bits (102), Expect = 5e-05
 Identities = 37/274 (13%), Positives = 80/274 (29%), Gaps = 66/274 (24%)

Query: 98  VEIASSNQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE 154
             + S ++V++  G  + + C  S   PK L       K  L+L  N+ +V  L  VQ  
Sbjct: 2   TSV-SPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQ-- 58

Query: 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214
           +     C+         +   L ++   E                          R+ L 
Sbjct: 59  EDSQPMCYSNCPDGQSTAKTFLTVYWTPE--------------------------RVELA 92

Query: 215 ENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLP--TIKWYKQDSPVE-ESDRIQ 270
                                  +++ L C  +G  P    T+   + +  ++ E    +
Sbjct: 93  PLPSWQPV--------------GKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGE 138

Query: 271 RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKN 330
               + ++    +     ++C          ++LF        +  +  +L    +    
Sbjct: 139 PAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELF-------ENTSAPYQLQTFVLPATP 191

Query: 331 KRLLSAAKMFEKHRILNVKKDESVILPCSAQGNP 364
            +L+S            ++ D    + CS  G  
Sbjct: 192 PQLVSPR---------VLEVDTQGTVVCSLDGLF 216

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 66.4 bits (162), Expect = 9e-14
 Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 11/79 (13%)

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR------IGSSLSISHVE----- 282
           V K E   L C A+G P PTI+WYK    VE      R         SL    +      
Sbjct: 21  VSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKS 80

Query: 283 ESDSGVWNCVANNSEGQDK 301
             D GV+ CVA N  G+  
Sbjct: 81  RPDEGVYVCVARNYLGEAV 99

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 69.1 bits (168), Expect = 1e-13
 Identities = 39/241 (16%), Positives = 70/241 (29%), Gaps = 48/241 (19%)

Query: 100 IASSNQVVVDVGHRIELHCRVSPKRLSS--AKAWLKDGLVLRRNSDEVLVLDRVQREDAG 157
             SS Q+ V VG  + + C V            WL         S+ VL          G
Sbjct: 9   TVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDK-DDASEYVLFYYSNLSVPTG 67

Query: 158 MYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENK 217
            +Q           + G L++  V ++D    Y C                  + + +  
Sbjct: 68  RFQNRSHLVGDTFHNDGSLLLQDVQKADE-GIYTCEIRL----------KNESMVMKKPV 116

Query: 218 RLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP---TIKWYKQDSP------------ 262
            L    +     R L V+  ++  + CS Q         + W                  
Sbjct: 117 ELWVLPEE---PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDS 173

Query: 263 ----------------VEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI 306
                           V+ +  I R   S+ +  V+ESD G++ C     + + +  + +
Sbjct: 174 NMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVL 233

Query: 307 Q 307
            
Sbjct: 234 H 234

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 60.7 bits (146), Expect = 1e-10
 Identities = 37/223 (16%), Positives = 70/223 (31%), Gaps = 40/223 (17%)

Query: 10  SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSS--AKAWLKDG--------LVLRRNSDE 59
            L      S Q+ V VG  + + C V            WL           ++   ++  
Sbjct: 4   GLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLS 63

Query: 60  V---------------------LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELV 98
           V                     L+L  VQ+ D G+Y C +   ++S  M   V L    V
Sbjct: 64  VPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVEL---WV 120

Query: 99  EIASSNQVVVDVGHRIELHCRV--SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRED- 155
                  + V VG   ++ C +  + ++  +   W+            +     ++    
Sbjct: 121 LPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKF 180

Query: 156 --AGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVN 196
              G ++  ++       + G + +  V ESD+   Y C    
Sbjct: 181 QSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQ-GIYTCSIYV 222

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 57.6 bits (138), Expect = 1e-09
 Identities = 22/178 (12%), Positives = 47/178 (26%), Gaps = 55/178 (30%)

Query: 218 RLLSAAKMFEKHRILNVKKDESVILPC---SAQGNPLPTIKWYKQDSPV----------- 263
           R      +      L V   ESV++ C     +   +  + W                  
Sbjct: 1   RSQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYS 60

Query: 264 -------EESDRIQRIGS------SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAH 310
                     +R   +G       SL +  V+++D G++ C                   
Sbjct: 61  NLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESM---------- 110

Query: 311 GKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTI 368
                +    + +  + E+ +              L V+  ++  + CS Q      +
Sbjct: 111 -----VMKKPVELWVLPEEPRD-------------LRVRVGDTTQMRCSIQSTEEKRV 150

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 66.5 bits (162), Expect = 3e-13
 Identities = 26/200 (13%), Positives = 58/200 (29%), Gaps = 36/200 (18%)

Query: 102 SSNQVVVDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSDEVLVLDRVQREDAGMYQ 160
            S  V   +GH I L+           +  W +   ++     +               +
Sbjct: 2   DSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRK--------------MK 47

Query: 161 CHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLL 220
             ++ G + +L++G+L I  +   D   +Y     +            G   L +   L 
Sbjct: 48  PFLKSGAFEILANGDLKIKNLTRDDS-GTYNVTVYST----------NGTRILNKALDLR 96

Query: 221 SAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISH 280
               + +           +  L C         +K Y+    +    +        ++S+
Sbjct: 97  ILEMVSKPMIYWEC---SNATLTCEVLEGTDVELKLYQGKEHLRSLRQ-------KTMSY 146

Query: 281 VEESDSGVWNCVANNSEGQD 300
              +    + C A N   Q+
Sbjct: 147 QWTNLRAPFKCKAVNRVSQE 166

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 53.4 bits (128), Expect = 9e-09
 Identities = 25/167 (14%), Positives = 50/167 (29%), Gaps = 29/167 (17%)

Query: 18  SGQVVVDVGHRIELHCRVSPKRLSSAK-AWLKDG---LVLRRNSDEV------------- 60
           SG V   +GH I L+           +  W +        +R                  
Sbjct: 3   SGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD 62

Query: 61  LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRV 120
           L +  + R+D+G Y   V + + +  ++  + L   ++E+ S   +  +      L C V
Sbjct: 63  LKIKNLTRDDSGTYNVTVYSTNGTRILNKALDL--RILEMVSKPMIYWE-CSNATLTCEV 119

Query: 121 ---SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIE 164
              +   L       +    L   S     +          ++C   
Sbjct: 120 LEGTDVELK----LYQGKEHL--RSLRQKTMSYQWTNLRAPFKCKAV 160

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 49.2 bits (117), Expect = 3e-07
 Identities = 19/156 (12%), Positives = 41/156 (26%), Gaps = 41/156 (26%)

Query: 227 EKHRILNVKKDESVILPCSAQ--GNPLPTIKWYKQDSPVEE----------SDRIQRIGS 274
                +       + L        + +  ++W +  + V E          S   + + +
Sbjct: 1   RDSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN 60

Query: 275 -SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRL 333
             L I ++   DSG +N    ++ G   +   +                           
Sbjct: 61  GDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALD-------------------------- 94

Query: 334 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
           L   +M  K  I    +  +  L C         +K
Sbjct: 95  LRILEMVSKPMI--YWECSNATLTCEVLEGTDVELK 128

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 63.5 bits (155), Expect = 5e-13
 Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSG 287
             V   E V L C       P + W K    + +S +   +     + L I      D+G
Sbjct: 18  QWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAG 76

Query: 288 VWNCVANNSEG 298
            + C    S+ 
Sbjct: 77  EYTCEVEASKS 87

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 49.2 bits (118), Expect = 7e-08
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 15/82 (18%)

Query: 21 VVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQRE 69
            V  G  +EL C +S     +     WLKD   +R++            +LV+     +
Sbjct: 18 QWVAPGEDVELRCELSRAGTPVH----WLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLK 73

Query: 70 DAGMYQCHVSADDDSAQMSAQV 91
          DAG Y C V A   +A +  + 
Sbjct: 74 DAGEYTCEVEASKSTASLHVEE 95

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 19/84 (22%)

Query: 106 VVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQRE 154
             V  G  +EL C +S     +     WLKD   +R++            +LV+     +
Sbjct: 18  QWVAPGEDVELRCELSRAGTPVH----WLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLK 73

Query: 155 DAGMYQCHIEDGKYHMLSSGELII 178
           DAG Y C +E  K    S+  L +
Sbjct: 74  DAGEYTCEVEASK----STASLHV 93

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 62.4 bits (152), Expect = 2e-12
 Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 5/71 (7%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSG 287
           +  +   S  L C         + WYK    +  S +++         L +    ++++G
Sbjct: 21  VQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAG 79

Query: 288 VWNCVANNSEG 298
            ++C A   + 
Sbjct: 80  EYSCEAGGQQL 90

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 45.9 bits (109), Expect = 9e-07
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 21/88 (23%)

Query: 21 VVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSD---------EVLVLDRVQR 68
          V  + G    L C V+      A+    W KDG  L  +S            LV+ +  +
Sbjct: 21 VQAEAGASATLSCEVA-----QAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQ 75

Query: 69 EDAGMYQCHVSADDDSAQMSAQVILGGE 96
           +AG Y C         Q+S ++ + G+
Sbjct: 76 AEAGEYSCEA----GGQQLSFRLQVAGQ 99

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 21/85 (24%)

Query: 106 VVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSD---------EVLVLDRVQR 153
           V  + G    L C V+      A+    W KDG  L  +S            LV+ +  +
Sbjct: 21  VQAEAGASATLSCEVA-----QAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQ 75

Query: 154 EDAGMYQCHIEDGKYHMLSSGELII 178
            +AG Y C     +     S  L +
Sbjct: 76  AEAGEYSCEAGGQQ----LSFRLQV 96

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 62.4 bits (152), Expect = 2e-12
 Identities = 15/81 (18%), Positives = 23/81 (28%), Gaps = 7/81 (8%)

Query: 232 LNVKKDESVILPCS-AQGNPLPTIKWYKQDSPVEESDRIQRIG----SSLSISHVEESDS 286
           + V + ES    C  +  +      W      V  S R Q         L +     SD+
Sbjct: 18  MEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDA 77

Query: 287 GVWNCVANNSEGQDKMQLFIQ 307
           G             K  L ++
Sbjct: 78  GEVVFSVRGLTS--KASLIVR 96

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 49.3 bits (118), Expect = 6e-08
 Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 13/83 (15%)

Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQREDA 156
           + V  G      C +S +  S    W   G  +  +S           +LV+      DA
Sbjct: 18  MEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDA 77

Query: 157 GMYQCHIEDGKYHMLSSGELIIH 179
           G     +        S   LI+ 
Sbjct: 78  GEVVFSVRGLT----SKASLIVR 96

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 9/75 (12%)

Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQREDA 71
          + V  G      C +S +  S    W   G  +  +S           +LV+      DA
Sbjct: 18 MEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDA 77

Query: 72 GMYQCHVSADDDSAQ 86
          G     V      A 
Sbjct: 78 GEVVFSVRGLTSKAS 92

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 61.6 bits (150), Expect = 3e-12
 Identities = 20/72 (27%), Positives = 23/72 (31%), Gaps = 5/72 (6%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG----SSLSISHVEESDSG 287
           L VK  E  +  C        T KWYK    V  S RI          L I  V   D G
Sbjct: 18  LTVKAAEQAVFKCEVSDEK-VTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEG 76

Query: 288 VWNCVANNSEGQ 299
            +  V +     
Sbjct: 77  DYTFVPDGYALS 88

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 15/81 (18%)

Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV----------LVLDRVQRED 70
          + V    +    C VS ++++    W K+G+ +R  S  +          LV+D V+ ED
Sbjct: 18 LTVKAAEQAVFKCEVSDEKVTGK--WYKNGVEVR-PSKRITISHVGRFHKLVIDDVRPED 74

Query: 71 AGMYQCHVSADDDSAQMSAQV 91
           G Y      D  +  +SA++
Sbjct: 75 EGDYTF--VPDGYALSLSAKL 93

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 13/72 (18%)

Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV----------LVLDRVQRED 155
           + V    +    C VS ++++    W K+G+ +R  S  +          LV+D V+ ED
Sbjct: 18  LTVKAAEQAVFKCEVSDEKVTGK--WYKNGVEVR-PSKRITISHVGRFHKLVIDDVRPED 74

Query: 156 AGMYQCHIEDGK 167
            G Y    +   
Sbjct: 75  EGDYTFVPDGYA 86

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 61.2 bits (149), Expect = 3e-12
 Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSG 287
             V   + + L C    N     KW K   PV+ESDR++ +       L I++    D G
Sbjct: 17  QTVNLGKEICLKCEISENI--PGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEG 74

Query: 288 VWNCVANNSEGQDKMQLFIQ 307
            +    +        ++ + 
Sbjct: 75  DYVFAPDAYNVTLPAKVHVI 94

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 14/82 (17%)

Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQREDA 71
            V++G  I L C +S       K W K+GL ++ +             LV+     ED 
Sbjct: 17 QTVNLGKEICLKCEISEN--IPGK-WTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDE 73

Query: 72 GMYQCHVSADDDSAQMSAQVIL 93
          G Y     A + +    A+V +
Sbjct: 74 GDYVFAPDAYNVTL--PAKVHV 93

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 12/71 (16%)

Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQREDA 156
             V++G  I L C +S       K W K+GL ++ +             LV+     ED 
Sbjct: 17  QTVNLGKEICLKCEISEN--IPGK-WTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDE 73

Query: 157 GMYQCHIEDGK 167
           G Y    +   
Sbjct: 74  GDYVFAPDAYN 84

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 61.3 bits (149), Expect = 5e-12
 Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ---RIGS--SLSISHVEESDS 286
           ++V++  S    C         + W+   +P+  ++  +   + G    L++  +   DS
Sbjct: 23  VDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDS 82

Query: 287 GVWNCVANNSE 297
           G     A +  
Sbjct: 83  GTIYFEAGDQR 93

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 46.6 bits (111), Expect = 8e-07
 Identities = 19/84 (22%), Positives = 27/84 (32%), Gaps = 15/84 (17%)

Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD----------EVLVLDRVQRED 155
           V V  G      CR+SP        W  D   L  N             VL L ++  +D
Sbjct: 23  VDVQEGSSATFRCRISPANYEPVH-WFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKD 81

Query: 156 AGMYQCHIEDGKYHMLSSGELIIH 179
           +G       D +    +S  L + 
Sbjct: 82  SGTIYFEAGDQR----ASAALRVT 101

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 46.2 bits (110), Expect = 8e-07
 Identities = 18/76 (23%), Positives = 23/76 (30%), Gaps = 11/76 (14%)

Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD----------EVLVLDRVQRED 70
          V V  G      CR+SP        W  D   L  N             VL L ++  +D
Sbjct: 23 VDVQEGSSATFRCRISPANYEPVH-WFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKD 81

Query: 71 AGMYQCHVSADDDSAQ 86
          +G           SA 
Sbjct: 82 SGTIYFEAGDQRASAA 97

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 60.9 bits (148), Expect = 7e-12
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 7/80 (8%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG----SSLSISHVEESDSG 287
           +   + E V+L C     P   ++W K    V ES  +          L +  V+  DSG
Sbjct: 23  VAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSG 81

Query: 288 VWNCVANNSEGQDKMQLFIQ 307
            + C  ++        + + 
Sbjct: 82  EYLCEIDDESA--SFTVTVT 99

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 47.1 bits (112), Expect = 4e-07
 Identities = 25/97 (25%), Positives = 32/97 (32%), Gaps = 21/97 (21%)

Query: 21  VVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSD---------EVLVLDRVQR 68
           V      R+ L C +         A   W KDG  +  +             LVL  VQ 
Sbjct: 23  VAAVRLERVVLTCELC-----RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQL 77

Query: 69  EDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQ 105
           ED+G Y C +    D    S  V +    V I  S  
Sbjct: 78  EDSGEYLCEI----DDESASFTVTVTEPPVRIIYSGP 110

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 21/86 (24%)

Query: 106 VVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSD---------EVLVLDRVQR 153
           V      R+ L C +         A   W KDG  +  +             LVL  VQ 
Sbjct: 23  VAAVRLERVVLTCELC-----RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQL 77

Query: 154 EDAGMYQCHIEDGKYHMLSSGELIIH 179
           ED+G Y C I+D      +S  + + 
Sbjct: 78  EDSGEYLCEIDDES----ASFTVTVT 99

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 59.7 bits (145), Expect = 1e-11
 Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 7/83 (8%)

Query: 221 SAAKMFEKH--RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GS 274
           S+   F K       V K   V        +P   +KWYK    +  S +          
Sbjct: 5   SSGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQR 63

Query: 275 SLSISHVEESDSGVWNCVANNSE 297
            L I++ + +D   +   A + +
Sbjct: 64  ILFINNCQMTDDSEYYVTAGDEK 86

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 17/79 (21%)

Query: 20 QVVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSD---------EVLVLDRVQ 67
             VD G R+     ++       K    W K+G  +R ++           +L ++  Q
Sbjct: 17 AYQVDKGGRVRFVVELA-----DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQ 71

Query: 68 REDAGMYQCHVSADDDSAQ 86
            D   Y      +  S +
Sbjct: 72 MTDDSEYYVTAGDEKCSTE 90

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 45.8 bits (109), Expect = 8e-07
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 21/87 (24%)

Query: 104 NQVVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSD---------EVLVLDRV 151
               VD G R+     ++       K    W K+G  +R ++           +L ++  
Sbjct: 16  PAYQVDKGGRVRFVVELA-----DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNC 70

Query: 152 QREDAGMYQCHIEDGKYHMLSSGELII 178
           Q  D   Y     D K     S EL +
Sbjct: 71  QMTDDSEYYVTAGDEK----CSTELFV 93

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 59.7 bits (145), Expect = 1e-11
 Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 225 MFEKH-RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ----RIGSSLSIS 279
            F K  R + V      +     +      ++W +  S +  S++          +L++ 
Sbjct: 10  AFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHTLTVR 68

Query: 280 HVEESDSGVWNCVANNSEG 298
            V  +D G +  +A +S+ 
Sbjct: 69  EVGPADQGSYAVIAGSSKV 87

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 15/82 (18%)

Query: 21 VVVDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSD---------EVLVLDRVQRED 70
          V V  G                 K  W + G  +  ++            L +  V   D
Sbjct: 18 VEVAAGSPAVFEAETERA---GVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPAD 74

Query: 71 AGMYQCHVSADDDSAQMSAQVI 92
           G Y     A     +   +VI
Sbjct: 75 QGSYAV--IAGSSKVKFDLKVI 94

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 43.1 bits (102), Expect = 8e-06
 Identities = 13/83 (15%), Positives = 20/83 (24%), Gaps = 17/83 (20%)

Query: 106 VVVDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSD---------EVLVLDRVQRED 155
           V V  G                 K  W + G  +  ++            L +  V   D
Sbjct: 18  VEVAAGSPAVFEAETERA---GVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPAD 74

Query: 156 AGMYQCHIEDGKYHMLSSGELII 178
            G Y       K       +L +
Sbjct: 75  QGSYAVIAGSSK----VKFDLKV 93

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 60.1 bits (145), Expect = 1e-11
 Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 14/87 (16%)

Query: 233 NVKKDESVILPCSAQGNPLP--TIKWYKQDSPVEESD------------RIQRIGSSLSI 278
           +      V   CSA  +     T  W   +  +++++             +    + L +
Sbjct: 21  SAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRL 80

Query: 279 SHVEESDSGVWNCVANNSEGQDKMQLF 305
            +VE +  G + CV +N  G       
Sbjct: 81  RNVEFTSEGXYQCVISNHFGSSYSVXA 107

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 41.2 bits (96), Expect = 6e-05
 Identities = 20/101 (19%), Positives = 30/101 (29%), Gaps = 22/101 (21%)

Query: 12  SIEMSPSGQVVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSDE---------- 59
            I + P  Q  +  G  +   C  +       +   W  D   L+    E          
Sbjct: 12  QITVQPETQSAIX-GSDVSFTCSAASSSDSPMTFA-WXXDNEALQDAEMENYAHLRAQGG 69

Query: 60  -------VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93
                  +L L  V+    G YQC +S    S+  S    L
Sbjct: 70  ELMEYTTILRLRNVEFTSEGXYQCVISNHFGSS-YSVXAXL 109

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 37.7 bits (87), Expect = 9e-04
 Identities = 14/80 (17%), Positives = 21/80 (26%), Gaps = 20/80 (25%)

Query: 106 VVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSDE-----------------VL 146
                G  +   C  +       +   W  D   L+    E                 +L
Sbjct: 20  QSAIXGSDVSFTCSAASSSDSPMTFA-WXXDNEALQDAEMENYAHLRAQGGELMEYTTIL 78

Query: 147 VLDRVQREDAGMYQCHIEDG 166
            L  V+    G YQC I + 
Sbjct: 79  RLRNVEFTSEGXYQCVISNH 98

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 60.1 bits (145), Expect = 2e-11
 Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 14/90 (15%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWY--------------KQDSPVEESDRIQRIGSSLS 277
           + +   E ++L C+A+      I +                +D   +    +++  S+L+
Sbjct: 18  IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLT 77

Query: 278 ISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
           I  V  SD G++ C A++     K   F++
Sbjct: 78  IDGVTRSDQGLYTCAASSGLMTKKNSTFVR 107

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 52.4 bits (125), Expect = 8e-09
 Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 18/100 (18%)

Query: 11  LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNS------------ 57
             + +SPS  + + VG ++ L+C    +        W       +               
Sbjct: 8   YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 67

Query: 58  -----DEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
                   L +D V R D G+Y C  S+   + + S  V 
Sbjct: 68  EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 107

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 45.9 bits (108), Expect = 2e-06
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 18/100 (18%)

Query: 98  VEIASSNQVVVDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNS-------------- 142
           V ++ S+ + + VG ++ L+C    +        W       +                 
Sbjct: 10  VVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM 69

Query: 143 ---DEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIH 179
                 L +D V R D G+Y C    G     +S  + +H
Sbjct: 70  KKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 109

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 6/71 (8%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS----SLSISHVEESDSG 287
               +  +  L C    + +  ++W K    + +  R           L I  +  +D+G
Sbjct: 18  KEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAG 75

Query: 288 VWNCVANNSEG 298
            ++C+      
Sbjct: 76  EYSCMCGQERT 86

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 50.1 bits (120), Expect = 4e-08
 Identities = 17/76 (22%), Positives = 21/76 (27%), Gaps = 14/76 (18%)

Query: 21 VVVDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSD---------EVLVLDRVQRED 70
               G    L C +S      A   W K    LR               L +  +   D
Sbjct: 18 KEASEGATATLQCELSKV----APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVAD 73

Query: 71 AGMYQCHVSADDDSAQ 86
          AG Y C    +  SA 
Sbjct: 74 AGEYSCMCGQERTSAT 89

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 49.3 bits (118), Expect = 7e-08
 Identities = 17/84 (20%), Positives = 23/84 (27%), Gaps = 18/84 (21%)

Query: 106 VVVDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSD---------EVLVLDRVQRED 155
                G    L C +S      A   W K    LR               L +  +   D
Sbjct: 18  KEASEGATATLQCELSKV----APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVAD 73

Query: 156 AGMYQCHIEDGKYHMLSSGELIIH 179
           AG Y C     +    +S  L + 
Sbjct: 74  AGEYSCMCGQER----TSATLTVR 93

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 8/92 (8%)

Query: 221 SAAKMFEKH-RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSS 275
           S A  F +    L V++  + +  C    +P  T+ W K    +  S + Q         
Sbjct: 6   SGANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLR 64

Query: 276 LSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
           L+IS +E++DS  + C    ++   + QL +Q
Sbjct: 65  LTISALEKADSDTYTCDIGQAQS--RAQLLVQ 94

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 21/86 (24%)

Query: 106 VVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSD---------EVLVLDRVQR 153
           + V+        C+          A   W K  L LR +             L +  +++
Sbjct: 18  LQVEEKGTAVFTCKTE-----HPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEK 72

Query: 154 EDAGMYQCHIEDGKYHMLSSGELIIH 179
            D+  Y C I   +    S  +L++ 
Sbjct: 73  ADSDTYTCDIGQAQ----SRAQLLVQ 94

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 21/94 (22%)

Query: 21  VVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSD---------EVLVLDRVQR 68
           + V+        C+          A   W K  L LR +             L +  +++
Sbjct: 18  LQVEEKGTAVFTCKTE-----HPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEK 72

Query: 69  EDAGMYQCHVSADDDSAQMSAQVILGGELVEIAS 102
            D+  Y C +      AQ  AQ+++ G     +S
Sbjct: 73  ADSDTYTCDIG----QAQSRAQLLVQGRRSGPSS 102

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 58.9 bits (143), Expect = 3e-11
 Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSG 287
           L V +  +  L C       P +KW   ++ +   D+           L + ++   DSG
Sbjct: 18  LEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSG 76

Query: 288 VWNCVANNSE 297
            ++C   +  
Sbjct: 77  RYSCSFGDQT 86

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 19/85 (22%)

Query: 106 VVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQRE 154
           + V  G    L C +S     +     W     VLR               LV+  ++ +
Sbjct: 18  LEVLEGGAATLRCVLSSVAAPVK----WCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQ 73

Query: 155 DAGMYQCHIEDGKYHMLSSGELIIH 179
           D+G Y C   D      +S  L + 
Sbjct: 74  DSGRYSCSFGDQT----TSATLTVT 94

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 19/83 (22%)

Query: 21 VVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQRE 69
          + V  G    L C +S     +     W     VLR               LV+  ++ +
Sbjct: 18 LEVLEGGAATLRCVLSSVAAPVK----WCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQ 73

Query: 70 DAGMYQCHVSADDDSAQMSAQVI 92
          D+G Y C  S  D +   SA + 
Sbjct: 74 DSGRYSC--SFGDQTT--SATLT 92

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 58.2 bits (141), Expect = 5e-11
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 6/70 (8%)

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS-----SLSISHVEESDSGV 288
           V K   + L      +    +KW K    ++ S       S     +L+IS    +D   
Sbjct: 28  VSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAA 86

Query: 289 WNCVANNSEG 298
           + CV    + 
Sbjct: 87  YQCVVGGEKC 96

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 18/95 (18%)

Query: 5  IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSDEV- 60
          +  K S + +        V  GH+I L   ++        A   WLK+G  ++ +  +  
Sbjct: 10 MDEKKSTAFQKKLEPAYQVSKGHKIRLTVELA-----DHDAEVKWLKNGQEIQMSGSKYI 64

Query: 61 ---------LVLDRVQREDAGMYQCHVSADDDSAQ 86
                   L + +    D   YQC V  +  S +
Sbjct: 65 FESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTE 99

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 22/88 (25%)

Query: 104 NQVVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSDEV----------LVLDR 150
               V  GH+I L   ++        A   WLK+G  ++ +  +           L + +
Sbjct: 24  PAYQVSKGHKIRLTVELA-----DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQ 78

Query: 151 VQREDAGMYQCHIEDGKYHMLSSGELII 178
               D   YQC +   K     S EL +
Sbjct: 79  CSLADDAAYQCVVGGEK----CSTELFV 102

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 57.8 bits (140), Expect = 6e-11
 Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 5/69 (7%)

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG----SSLSISHVEESDSGVW 289
               E V+L C           WYK    VEES+ +          L +   +  DSG +
Sbjct: 22  FTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEF 80

Query: 290 NCVANNSEG 298
            C       
Sbjct: 81  ECRTEGVSA 89

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 48.9 bits (117), Expect = 9e-08
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 17/83 (20%)

Query: 21 VVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSD---------EVLVLDRVQR 68
          +      R+ L C +S            W KDG  +  +             L+L   + 
Sbjct: 20 LTFTTSERVVLTCELS-----RVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKV 74

Query: 69 EDAGMYQCHVSADDDSAQMSAQV 91
          +D+G ++C          ++ Q 
Sbjct: 75 QDSGEFECRTEGVSAFFGVTVQD 97

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 46.6 bits (111), Expect = 6e-07
 Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 21/86 (24%)

Query: 106 VVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSD---------EVLVLDRVQR 153
           +      R+ L C +S            W KDG  +  +             L+L   + 
Sbjct: 20  LTFTTSERVVLTCELS-----RVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKV 74

Query: 154 EDAGMYQCHIEDGKYHMLSSGELIIH 179
           +D+G ++C  E       +   + + 
Sbjct: 75  QDSGEFECRTEGVS----AFFGVTVQ 96

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.4 bits (152), Expect = 7e-11
 Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 6/113 (5%)

Query: 192 CRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL 251
           C     + G          L          A     K + + V +  +V   C A G+P 
Sbjct: 357 CATPEFVQGKEFKDFPDVLL--PNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPP 414

Query: 252 PTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVANNSEGQD 300
           P I W      +  +    R+      +L + + +  D+G + C+A N+ G D
Sbjct: 415 PAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGND 467

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 10/76 (13%)

Query: 13  IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD-GLVLRRNSDE--------VLVL 63
           I    + QV VD GH ++  CR       +   WL     ++   S+          L +
Sbjct: 387 IRDRKAQQVFVDEGHTVQFVCRADGDPPPAIL-WLSPRKHLVSAKSNGRLTVFPDGTLEV 445

Query: 64  DRVQREDAGMYQCHVS 79
              Q +D G Y C  +
Sbjct: 446 RYAQVQDNGTYLCIAA 461

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 58.5 bits (141), Expect = 7e-11
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 17/97 (17%)

Query: 221 SAAKMF-EKHRILNVKKDESVILPCSAQGNPL---PTIKWYKQDSPVEESDRIQRI---- 272
           S+  +F EK +   VK  E +      +   L   PTIKW+K       S   + +    
Sbjct: 5   SSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKE 64

Query: 273 ---------GSSLSISHVEESDSGVWNCVANNSEGQD 300
                       + I   +++ +G + C     +  D
Sbjct: 65  TFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFD 101

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 59.9 bits (144), Expect = 8e-11
 Identities = 34/191 (17%), Positives = 60/191 (31%), Gaps = 28/191 (14%)

Query: 111 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQR-EDAGMYQCHIEDGKYH 169
           G  +EL C +          W K+G  L +  D+ LVL      ED+G Y C+       
Sbjct: 14  GTSVELTCPLDSD---ENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPAS--- 67

Query: 170 MLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKH 229
                         +     Y    V     A   +  +      + K+  S     +  
Sbjct: 68  --------------NKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNL 113

Query: 230 RILNVKK-DESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGV 288
             ++  + D SV+L C         IKW K  S +   +  +    + ++ +  +   G 
Sbjct: 114 VQVDGSRGDGSVLLTCGLTDKT---IKWLKDGSIISPLNATKN---TWNLGNNAKDPRGT 167

Query: 289 WNCVANNSEGQ 299
           + C        
Sbjct: 168 YQCQGAKETSN 178

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 59.5 bits (143), Expect = 9e-11
 Identities = 35/170 (20%), Positives = 57/170 (33%), Gaps = 35/170 (20%)

Query: 26  GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQR-EDAGMYQC-------- 76
           G  +EL C +          W K+G  L +  D+ LVL      ED+G Y C        
Sbjct: 14  GTSVELTCPLDSD---ENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKN 70

Query: 77  -------HVSADDDSAQMSAQVILGGELVEIASSNQV----------VVDVGHRIELHCR 119
                   V + DD+ + +A+     +       +Q                  + L C 
Sbjct: 71  TYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCG 130

Query: 120 VSPKRLSSAKAWLKDGLVLRRNSD--EVLVLDRVQREDAGMYQCHIEDGK 167
           ++ K +     WLKDG ++   +       L    ++  G YQC      
Sbjct: 131 LTDKTIK----WLKDGSIISPLNATKNTWNLGNNAKDPRGTYQCQGAKET 176

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 52.2 bits (124), Expect = 3e-08
 Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 6/128 (4%)

Query: 238 ESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSE 297
            SV L C    +    +KW K    + +      +    S    E  DSG + C    S 
Sbjct: 15  TSVELTCPLDSDE--NLKWEKNGQELPQKHDKHLVLQDFS----EVEDSGYYVCYTPASN 68

Query: 298 GQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILP 357
               + L  +          + +    + D+  K      K     ++   + D SV+L 
Sbjct: 69  KNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLT 128

Query: 358 CSAQGNPL 365
           C      +
Sbjct: 129 CGLTDKTI 136

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 59.3 bits (143), Expect = 2e-10
 Identities = 42/228 (18%), Positives = 72/228 (31%), Gaps = 41/228 (17%)

Query: 100 IASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR--RNSDEVLVLDRVQREDAG 157
           +  S  ++  VG   +L C + P   +       + + L+   +S   +V      ++  
Sbjct: 8   LGPSGPILAMVGEDADLPCHLFPTMSA-------ETMELKWVSSSLRQVVNVYADGKEVE 60

Query: 158 MYQCHIEDGKYHMLSSGE------LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRL 211
             Q     G+  +L  G       L IH V  SD    Y C                G  
Sbjct: 61  DRQSAPYRGRTSILRDGITAGKAALRIHNVTASDS-GKYLCY------------FQDGDF 107

Query: 212 SLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PLPTIKWYK---------QDS 261
                  L  AA   + H  +   KD  + L C + G  P P I+W           +  
Sbjct: 108 YEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAP 167

Query: 262 PVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA 309
            V +   +  + +S+    +  S     +C   +S    +    I  A
Sbjct: 168 VVADGVGLYAVAASVI---MRGSSGEGVSCTIRSSLLGLEKTASISIA 212

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 47.0 bits (111), Expect = 2e-06
 Identities = 29/191 (15%), Positives = 50/191 (26%), Gaps = 44/191 (23%)

Query: 16  SPSGQVVVDVGHRIELHCRVSP-------------KRLSSAKAWLKDGLVLRRNSDEV-- 60
            PSG ++  VG   +L C + P               L        DG  +         
Sbjct: 9   GPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYR 68

Query: 61  ----------------LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSN 104
                           L +  V   D+G Y C+    D   +   ++ +     ++    
Sbjct: 69  GRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDV 128

Query: 105 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLD-----------RVQR 153
           +   D G  I L CR +         W  +        +  +V D            ++ 
Sbjct: 129 KGYKDGG--IHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRG 186

Query: 154 EDAGMYQCHIE 164
                  C I 
Sbjct: 187 SSGEGVSCTIR 197

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 56.5 bits (136), Expect = 2e-10
 Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 16/90 (17%)

Query: 227 EKHRILNVKKDESVILPCSAQGNPL---PTIKWYKQDSPVEESDRIQRI----------- 272
            + +   V    S+       G  L   P +KW+K       S   Q +           
Sbjct: 9   MRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASK 68

Query: 273 --GSSLSISHVEESDSGVWNCVANNSEGQD 300
                L I+  + + +G + C  +  +  D
Sbjct: 69  VYLFELHITDAQPAFTGSYRCEVSTKDKFD 98

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 19/91 (20%), Positives = 25/91 (27%), Gaps = 20/91 (21%)

Query: 21  VVVDVGHRIELHCRV--SPKRLSSAKAWLKDG-----------LVLRRNSDEV------- 60
             V VG  I    RV  +         W K             L L  + D         
Sbjct: 14  GEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFE 73

Query: 61  LVLDRVQREDAGMYQCHVSADDDSAQMSAQV 91
           L +   Q    G Y+C VS  D     +  +
Sbjct: 74  LHITDAQPAFTGSYRCEVSTKDKFDCSNFNL 104

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 7/116 (6%)

Query: 192 CRGVNKLTGASLLSVNRGR---LSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG 248
              + +++  S L  +R +   +      R  +  +   K     V + +S    C    
Sbjct: 449 LPPLGRISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIA 508

Query: 249 NPLPTIKWYKQDSPVEESDRIQ----RIGSSLSISHVEESDSGVWNCVANNSEGQD 300
           +  P + W+K D  +++S +           L+I+ V+  D G +   A NS G  
Sbjct: 509 SSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTK 564

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS----SLSISHVEESDSG 287
               +  + +L C         ++W+K    + + DR           L I  +   D+G
Sbjct: 29  EEATEGATAVLRCELSKMA--PVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAG 86

Query: 288 VWNCVANNSE 297
            + C+     
Sbjct: 87  EYLCMCGKER 96

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 18/76 (23%), Positives = 22/76 (28%), Gaps = 14/76 (18%)

Query: 21  VVVDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSD---------EVLVLDRVQRED 70
                G    L C +S      A   W K    LR               L +  +  ED
Sbjct: 29  EEATEGATAVLRCELSKM----APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAED 84

Query: 71  AGMYQCHVSADDDSAQ 86
           AG Y C    +  SA 
Sbjct: 85  AGEYLCMCGKERTSAM 100

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 18/84 (21%), Positives = 24/84 (28%), Gaps = 18/84 (21%)

Query: 106 VVVDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSD---------EVLVLDRVQRED 155
                G    L C +S      A   W K    LR               L +  +  ED
Sbjct: 29  EEATEGATAVLRCELSKM----APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAED 84

Query: 156 AGMYQCHIEDGKYHMLSSGELIIH 179
           AG Y C     +    +S  L + 
Sbjct: 85  AGEYLCMCGKER----TSAMLTVR 104

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 9/74 (12%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD------RIQRIG--SSLSISHVEE 283
             V   + V +           + W K    +   D      R ++ G    L  S V +
Sbjct: 18  QQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQ 76

Query: 284 SDSGVWNCVANNSE 297
            D G +  + N  +
Sbjct: 77  EDRGRYQVITNGGQ 90

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 19/86 (22%)

Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE-------------VLVLDRVQ 152
             V VG R+E+   VS +       W+K+G+ L R                 +L+   V 
Sbjct: 18  QQVFVGDRVEMAVEVSEEGAQVM--WMKNGVELTREDSFKARYRFKKDGKRHILIFSDVV 75

Query: 153 REDAGMYQCHIEDGKYHMLSSGELII 178
           +ED G YQ     G+       ELI+
Sbjct: 76  QEDRGRYQVITNGGQ----CEAELIV 97

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 49.3 bits (118), Expect = 5e-08
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 15/79 (18%)

Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE-------------VLVLDRVQ 67
            V VG R+E+   VS +       W+K+G+ L R                 +L+   V 
Sbjct: 18 QQVFVGDRVEMAVEVSEEGAQVM--WMKNGVELTREDSFKARYRFKKDGKRHILIFSDVV 75

Query: 68 REDAGMYQCHVSADDDSAQ 86
          +ED G YQ   +     A+
Sbjct: 76 QEDRGRYQVITNGGQCEAE 94

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 3e-10
 Identities = 57/406 (14%), Positives = 121/406 (29%), Gaps = 112/406 (27%)

Query: 5   IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLD 64
           +++   L  ++ P+     D    I         R+ S +A L+  L  +   + +LVL 
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNI-------KLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 65  RVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVD-VGHRIELHCRVSPK 123
            VQ           +A + S +     IL      + +  + V D +      H  +   
Sbjct: 252 NVQNAK------AWNAFNLSCK-----IL------LTTRFKQVTDFLSAATTTHISLDH- 293

Query: 124 RLSSAKAWLKDGLVLRRNSDEVL--VLD-RVQ--REDAGMYQCHIEDGKYHMLSSGELII 178
                       L        +L   LD R Q    +           +  ++   E I 
Sbjct: 294 --------HSMTLT-PDEVKSLLLKYLDCRPQDLPREV----LTTNPRRLSII--AESIR 338

Query: 179 HQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDE 238
             +   D ++   C   +KLT     S+N   L   E +++     +F      +     
Sbjct: 339 DGLATWDNWKHVNC---DKLTTIIESSLN--VLEPAEYRKMFDRLSVFPP----SAHIPT 389

Query: 239 SVILPCSAQGNPLPTIKWYKQDSPVEESDRI------------QRIGSSLSI-------- 278
            ++           ++ W+  D    +   +            Q   S++SI        
Sbjct: 390 ILL-----------SLIWF--DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436

Query: 279 SHVEESDS---------GVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEK 329
             +E   +          +     ++      +  +  Y+H  +H+ +       ++   
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-YSHIGHHLKNIEH--PERMTLF 493

Query: 330 NKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTI----KYR 371
               L     F + +I +           +A G+ L T+     Y+
Sbjct: 494 RMVFLDFR--FLEQKIRHDS------TAWNASGSILNTLQQLKFYK 531

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.7 bits (142), Expect = 7e-10
 Identities = 9/80 (11%), Positives = 25/80 (31%), Gaps = 3/80 (3%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG---SSLSISHVEESDSGV 288
                 +++ + C  +   +  +     +  V        +      L    V+  D GV
Sbjct: 256 WEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGV 315

Query: 289 WNCVANNSEGQDKMQLFIQY 308
           + C A      + + + ++ 
Sbjct: 316 YTCYAMGETFNETLSVELKV 335

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 7/84 (8%)

Query: 3   LFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV-- 60
             I      +            +G  + + C    + ++       +  VL + S+    
Sbjct: 238 HNIFSLDFFNCSEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVS 297

Query: 61  -----LVLDRVQREDAGMYQCHVS 79
                L   +VQ ED G+Y C+  
Sbjct: 298 VRNGDLFFKKVQVEDGGVYTCYAM 321

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 59.4 bits (143), Expect = 8e-10
 Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 14/134 (10%)

Query: 174 GELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILN 233
            EL I     +  Y+       +   G   +        +       +    F + + + 
Sbjct: 123 AELAISTFWPNF-YQVIFEVITSGHQGYLAID------EVKVLGHPCTRTPHFLRIQNVE 175

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDR-------IQRIGSSLSISHVEESDS 286
           V   +     CSA G  +   + + Q   V ++          +R  +S ++ +  + D+
Sbjct: 176 VNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDA 235

Query: 287 GVWNCVANNSEGQD 300
           G + C+     G  
Sbjct: 236 GKYRCMIRTEGGVG 249

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 20/149 (13%), Positives = 38/149 (25%), Gaps = 16/149 (10%)

Query: 31  LHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADD--DSAQMS 88
           ++ +V+   L +   W   G   R  +   L +         +    +++      A   
Sbjct: 96  VYVKVNNGPLGNPI-WNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDE 154

Query: 89  AQVILGG--ELVEIASSNQVVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSDE 144
            +V+               V V+ G      C                 D         +
Sbjct: 155 VKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIK 214

Query: 145 V---------LVLDRVQREDAGMYQCHIE 164
           V           +    + DAG Y+C I 
Sbjct: 215 VTSSRRFIASFNVVNTTKRDAGKYRCMIR 243

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 16/128 (12%), Positives = 29/128 (22%), Gaps = 26/128 (20%)

Query: 244 CSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ 303
                 PL    W     P    +R     + L+IS    +   V   V  +        
Sbjct: 98  VKVNNGPLGNPIWNISGDPTRTWNR-----AELAISTFWPNFYQVIFEVITSGHQGYLAI 152

Query: 304 LFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN 363
             ++                                F + + + V   +     CSA G 
Sbjct: 153 DEVKVLGHPCTRTP---------------------HFLRIQNVEVNAGQFATFQCSAIGR 191

Query: 364 PLPTIKYR 371
            +   +  
Sbjct: 192 TVAGDRLW 199

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 53.8 bits (130), Expect = 1e-09
 Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG----SSLSISHVEESDSGVW 289
           V   E+          P    +W  +  P+  S   + I       L + + +   +G  
Sbjct: 17  VFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEV 75

Query: 290 NCVANNSE 297
           +  A N++
Sbjct: 76  SFQAANTK 83

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 15/85 (17%)

Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQREDA 156
           V V VG        +S   +     W   G  L  + D          +L+L   Q    
Sbjct: 15  VEVFVGETAHFEIELSEPDVHGQ--WKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMT 72

Query: 157 GMYQCHIEDGKYHMLSSGELIIHQV 181
           G       + K    S+  L + ++
Sbjct: 73  GEVSFQAANTK----SAANLKVKEL 93

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 11/75 (14%)

Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQREDA 71
          V V VG        +S   +     W   G  L  + D          +L+L   Q    
Sbjct: 15 VEVFVGETAHFEIELSEPDVHGQ--WKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMT 72

Query: 72 GMYQCHVSADDDSAQ 86
          G      +    +A 
Sbjct: 73 GEVSFQAANTKSAAN 87

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 55.8 bits (134), Expect = 2e-09
 Identities = 33/198 (16%), Positives = 58/198 (29%), Gaps = 29/198 (14%)

Query: 13  IEMSPSGQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE 69
            ++ P     V+ G  + L+C  +   P+R     +  ++G           ++D   RE
Sbjct: 5   ADLQPR-VAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDI--RE 61

Query: 70  DAGMYQCHVSADDDSAQMSAQVILGG--ELVEIASSNQVVVDVGHRIELHCRVS----PK 123
                 C       + Q    +      + VE+         VG    L CRV       
Sbjct: 62  PETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQP-VGENFTLSCRVPGAGPRA 120

Query: 124 RLSSAKAWLKDGLVLRR----------NSDEVLVLDRVQREDAGM-YQCHIEDGKYHMLS 172
            L+     L+    L R              +      +RED G  + C  E     +  
Sbjct: 121 SLTL--TLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAE---LDLRP 175

Query: 173 SGELIIHQVDESDRYRSY 190
            G  +          R++
Sbjct: 176 HGLGLFENSSAPRELRTF 193

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 54.6 bits (131), Expect = 5e-09
 Identities = 27/168 (16%), Positives = 54/168 (32%), Gaps = 27/168 (16%)

Query: 20  QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL----------------------RRNS 57
            V   +G  + L          +   WL +   L                      R N 
Sbjct: 7   MVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNF 66

Query: 58  DE--VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGEL--VEIASSNQVVVDVGHR 113
            +   L L  ++ ED G Y+  +S    +   S  + +  +L  +++ + +Q+  ++   
Sbjct: 67  TQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCE 126

Query: 114 IELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 161
           + L C V     + +  W   G  L    + + V    +      Y C
Sbjct: 127 LHLTCSVEDADDNVSFRWEALGNTLSSQPN-LTVSWDPRISSEQDYTC 173

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 54.6 bits (131), Expect = 5e-09
 Identities = 28/193 (14%), Positives = 60/193 (31%), Gaps = 24/193 (12%)

Query: 105 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIE 164
            V   +G  + L          +   WL +       +    ++    +          +
Sbjct: 7   MVNGILGESVTLPLEFPAGEKVNFITWLFN------ETSLAFIVPHETKSPEIHVTNPKQ 60

Query: 165 DGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAK 224
             + +   S  L +  +   D   SY+ + ++  T A L S     L    N ++ +   
Sbjct: 61  GKRLNFTQSYSLQLSNLKMEDT-GSYRAQ-ISTKTSAKLSSYTLRILRQLRNIQVTN--- 115

Query: 225 MFEKHRILNVKKDESVILPCSAQ-GNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVE- 282
               H  L       + L CS +  +   + +W    + +           +L++S    
Sbjct: 116 ----HSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQ-------PNLTVSWDPR 164

Query: 283 ESDSGVWNCVANN 295
            S    + C+A N
Sbjct: 165 ISSEQDYTCIAEN 177

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 54.4 bits (130), Expect = 9e-09
 Identities = 39/232 (16%), Positives = 67/232 (28%), Gaps = 39/232 (16%)

Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED 165
           V V  G  + L C  +         W        R+     +     +        H   
Sbjct: 10  VEVMRGKSVILDCTPTGTHDHYMLEWFLTD----RSGARPRLASAEMQGSELQVTMHDTR 65

Query: 166 GK---YHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSA 222
           G+   Y + S G L++ +    D  R Y C       G            L    +  + 
Sbjct: 66  GRSPPYQLDSQGRLVLAEAQVGD-ERDYVCVVRAGAAG-----TAEATARLNVFAKPEAT 119

Query: 223 AKMFEKHRILNVKKDESVILPC-SAQGNPLPTIKWYKQDSPVEESDRIQRIG-------- 273
                K  +  ++     I  C S  GNP P I WY+    +E    +   G        
Sbjct: 120 EVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVR 179

Query: 274 ---------SSLSISHVEESDSGVWNCVANNSEGQDK--------MQLFIQY 308
                    S+L +   ++     ++C A+ S  + +          L + Y
Sbjct: 180 EASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLHY 231

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 51.7 bits (123), Expect = 8e-08
 Identities = 32/207 (15%), Positives = 56/207 (27%), Gaps = 43/207 (20%)

Query: 21  VVVDVGHRIELHCRVSPKRLSSAKAWLKDG-----------------------------L 51
           V V  G  + L C  +         W                                  
Sbjct: 10  VEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSP 69

Query: 52  VLRRNSDEVLVLDRVQREDAGMYQCHVSADDD-SAQMSAQVILGGE----LVEIASSNQV 106
             + +S   LVL   Q  D   Y C V A    +A+ +A++ +  +     V        
Sbjct: 70  PYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLS 129

Query: 107 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDG 166
           V++   +    C       +    W ++G  L    +         R            G
Sbjct: 130 VMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVRE------ASG 183

Query: 167 KYHMLSSGELIIHQVDESDRYRSYQCR 193
              + S+  L   ++ + DR  S+ C 
Sbjct: 184 LLSLTSTLYL---RLRKDDRDASFHCA 207

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 54.1 bits (129), Expect = 1e-08
 Identities = 24/137 (17%), Positives = 42/137 (30%), Gaps = 14/137 (10%)

Query: 16  SPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE----VLVLDRVQREDA 71
            P   V V +G   +L CR++     ++  W      L     +    VL +       A
Sbjct: 12  PPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAA 71

Query: 72  GMYQCHVSADDDSAQMSAQ--VILGGELVEIASSNQVVVDVGHRIELHCRVS----PKRL 125
           G   C  S    + Q + Q  V      + ++ +      V    E+ C           
Sbjct: 72  GTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAAL----VPGDPEVACTAHKVTPVDPN 127

Query: 126 SSAKAWLKDGLVLRRNS 142
           + + + L  G  L    
Sbjct: 128 ALSFSLLVGGQELEGAQ 144

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 49.9 bits (118), Expect = 3e-07
 Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 2/79 (2%)

Query: 230 RILNVKKDESVILPCSAQG-NPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGV 288
            ++ V    S  L C     +   +++W   D+ +  + +     S L++ +   S +G 
Sbjct: 15  PVVAVALGASRQLTCRLACADRGASVQWRGLDTSLG-AVQSDTGRSVLTVRNASLSAAGT 73

Query: 289 WNCVANNSEGQDKMQLFIQ 307
             CV +      +  + + 
Sbjct: 74  RVCVGSCGGRTFQHTVQLL 92

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 43.0 bits (100), Expect = 6e-05
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 4/84 (4%)

Query: 102 SSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE----VLVLDRVQREDAG 157
               V V +G   +L CR++     ++  W      L     +    VL +       AG
Sbjct: 13  PEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAG 72

Query: 158 MYQCHIEDGKYHMLSSGELIIHQV 181
              C    G      + +L+++  
Sbjct: 73  TRVCVGSCGGRTFQHTVQLLVYAF 96

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 7/73 (9%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPV--EESDRIQRIG----SSLSISHVEESD 285
                 E V L C         +KW+K    +      R +         L I    ++D
Sbjct: 17  TTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKAD 75

Query: 286 SGVWNCVANNSEG 298
           +  ++ +    + 
Sbjct: 76  AAEYSVMTTGGQS 88

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 15/83 (18%)

Query: 21 VVVDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSDE-----------VLVLDRVQR 68
               G R+EL C VS      A   W K+G  +                 +L+++   +
Sbjct: 17 TTAYCGERVELECEVSED---DANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATK 73

Query: 69 EDAGMYQCHVSADDDSAQMSAQV 91
           DA  Y    +    SA++S  +
Sbjct: 74 ADAAEYSVMTTGGQSSAKLSVDL 96

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 19/86 (22%)

Query: 106 VVVDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSDE-----------VLVLDRVQR 153
                G R+EL C VS      A   W K+G  +                 +L+++   +
Sbjct: 17  TTAYCGERVELECEVSED---DANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATK 73

Query: 154 EDAGMYQCHIEDGKYHMLSSGELIIH 179
            DA  Y      G+    SS +L + 
Sbjct: 74  ADAAEYSVMTTGGQ----SSAKLSVD 95

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 53.6 bits (129), Expect = 4e-08
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQD----SPVEESDRIQRIGS-SLSISHVEESDS 286
           LNV +  +  L C A    L ++ W   +    +      RI  +   +L+ ++V   D+
Sbjct: 351 LNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDT 409

Query: 287 GVWNCVANNSEGQDKMQLFIQY 308
           G++ C+ +NS G       +  
Sbjct: 410 GMYTCMVSNSVGNTTASATLNV 431

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 16/89 (17%)

Query: 17  PSGQVVVDVGHRIELHCRVS-PKRLSSAKAWLK-DGLVLRRNS---------DEVLVLDR 65
           P   + V  G   EL CR S      ++ +W+  +G V+   +         D  L    
Sbjct: 347 PPADLNVTEGMAAELKCRASTSL---TSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTN 403

Query: 66  VQREDAGMYQCHVS--ADDDSAQMSAQVI 92
           V  +D GMY C VS    + +A  +  V 
Sbjct: 404 VTVQDTGMYTCMVSNSVGNTTASATLNVT 432

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 51.4 bits (123), Expect = 6e-08
 Identities = 30/175 (17%), Positives = 54/175 (30%), Gaps = 18/175 (10%)

Query: 8   KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQ 67
           K SL    S     +V +   + L C+  P          K      ++    L +  ++
Sbjct: 8   KPSLQALPSS----LVPLEKPVTLRCQGPPG--VDLYRLEKLSSSRYQDQAV-LFIPAMK 60

Query: 68  REDAGMYQCHVSADDDSAQMSA----QVILGGELVEIASSNQVVVDVGHRIELHCRVSPK 123
           R  AG Y+C        +  S               +++     V  G  + L C    +
Sbjct: 61  RSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQC--QTR 118

Query: 124 RLSSAKAWLKDG-LVLRRNSDEV----LVLDRVQREDAGMYQCHIEDGKYHMLSS 173
                 A  K+G     +N +        +  V    +G Y+C+    +   L S
Sbjct: 119 YGFDQFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFSSRDPYLWS 173

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 39.0 bits (91), Expect = 8e-04
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 41/190 (21%)

Query: 107 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDG 166
           +V +   + L C+  P          K      ++    L +  ++R  AG Y+C  ++G
Sbjct: 18  LVPLEKPVTLRCQGPPG--VDLYRLEKLSSSRYQDQAV-LFIPAMKRSLAGRYRCSYQNG 74

Query: 167 KYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF 226
               L S +L +                   +     LS   G                 
Sbjct: 75  SLWSLPSDQLELV---------------ATGVFAKPSLSAQPGP---------------- 103

Query: 227 EKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDS 286
                  V     V L C  +         YK+  P    +  +   +S  I  V  + S
Sbjct: 104 ------AVSSGGDVTLQCQTR-YGFDQFALYKEGDPAPYKNPERWYRASFPIITVTAAHS 156

Query: 287 GVWNCVANNS 296
           G + C + +S
Sbjct: 157 GTYRCYSFSS 166

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 52.6 bits (125), Expect = 6e-08
 Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 3/81 (3%)

Query: 230 RILNVKKDESVILPCSAQ-GNPLPTIKWYKQDSPV-EESDRIQRIGSSLSISHVEESDSG 287
            +L     +SV L C         T+ W  +         R   +G  L +  V+  DSG
Sbjct: 14  GVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSG 73

Query: 288 VWNCVANNSEGQDKMQLFIQY 308
            ++C          + L +  
Sbjct: 74  NYSCYRAGRP-AGTVHLLVDV 93

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 47.9 bits (113), Expect = 2e-06
 Identities = 18/117 (15%), Positives = 35/117 (29%), Gaps = 12/117 (10%)

Query: 17  PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV------LVLDRVQRED 70
             G +    G  + L C       ++   W+        +          L+L  VQ  D
Sbjct: 12  ARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHD 71

Query: 71  AGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSS 127
           +G Y C+ +    +  +   V +  E  ++               + C   P+   S
Sbjct: 72  SGNYSCYRA-GRPAGTVHLLVDVPPEEPQL-----SCFRKSPLSNVVCEWGPRSTPS 122

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 46.4 bits (109), Expect = 6e-06
 Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 10/95 (10%)

Query: 98  VEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV------LVLDRV 151
            E+A      +  G  + L C       ++   W+        +          L+L  V
Sbjct: 9   QEVARGVLTSL-PGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSV 67

Query: 152 QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDR 186
           Q  D+G Y C+          +  L++    E  +
Sbjct: 68  QLHDSGNYSCYRAG---RPAGTVHLLVDVPPEEPQ 99

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 52.2 bits (125), Expect = 9e-08
 Identities = 52/308 (16%), Positives = 83/308 (26%), Gaps = 62/308 (20%)

Query: 8   KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR-----RNSDEVLV 62
           K  LS   S     VV  G  + L C    +   +     K+  +       R   E   
Sbjct: 24  KPFLSAWPSA----VVPRGGHVTLRCHYRHR--FNNFMLYKEDRIHIPIFHGRIFQESFN 77

Query: 63  LDRVQREDAGMYQCHVSADDDSA---QMSAQVILGGELVEIASSNQV-------VVDVGH 112
           +  V    AG Y C  S           S  V++   +V               +V  G 
Sbjct: 78  MSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVI---MVTGNHRKPSLLAHPGPLVKSGE 134

Query: 113 RIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS 172
           R+ L C               +   L +          V +   G             +S
Sbjct: 135 RVILQCWSDIM---------FEHFFLHKEGISKDPSRLVGQIHDG-------------VS 172

Query: 173 SGELIIHQVDESDRYRSYQCRGVNKLT--GASLLSVNRGRLSLTENKRL--LSAAKMFEK 228
                I  +  +    +Y+C G    T    S  S +   + +T       LSA      
Sbjct: 173 KANFSIGPMMLALA-GTYRCYGSVTHTPYQLSAPS-DPLDIVVTGPYEKPSLSA------ 224

Query: 229 HRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS---SLSISHVEESD 285
                V+  ESV L CS++ +        ++    E      R  +            + 
Sbjct: 225 QPGPKVQAGESVTLSCSSRSSYD-MYHLSREGGAHERRLPAVRKVNRTFQADFPLGPATH 283

Query: 286 SGVWNCVA 293
            G + C  
Sbjct: 284 GGTYRCFG 291

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 32/183 (17%), Positives = 65/183 (35%), Gaps = 22/183 (12%)

Query: 8   KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDE 59
              +S + SP    V+ +   +++ C+   +   +    +K+               +D 
Sbjct: 9   MPFISAKSSP----VIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDP 64

Query: 60  VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELV----EIASSNQVVVDVGHRIE 115
             V+D +    AG YQC         + S  + L    +     +++   +V+  G  I 
Sbjct: 65  EFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENIS 124

Query: 116 LHCRVSPKRLSSAKAWLKDG---LVLRRNSDE--VLVLDRVQREDAGMYQCHIEDGKYHM 170
           L C  S        +  K+G   L   ++ +      L  V    +G+Y+C+    +   
Sbjct: 125 LTCS-SAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPY 183

Query: 171 LSS 173
           L S
Sbjct: 184 LWS 186

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 45/198 (22%)

Query: 107 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGM 158
           V+ +   +++ C+   +   +    +K+               +D   V+D +    AG 
Sbjct: 19  VIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGR 78

Query: 159 YQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKR 218
           YQC    G Y    S  L +                V  L G   LS +RG +       
Sbjct: 79  YQCQYRIGHYRFRYSDTLELV---------------VTGLYGKPFLSADRGLV------- 116

Query: 219 LLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSI 278
                          +   E++ L CS+   P       K+        +     ++ S+
Sbjct: 117 ---------------LMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSL 161

Query: 279 SHVEESDSGVWNCVANNS 296
             V+ + SG++ C    +
Sbjct: 162 GPVDLNVSGIYRCYGWYN 179

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 25/139 (17%)

Query: 234 VKKDESVILPC-SAQGNPLPTIKWYKQDSPVEESDRIQRIGSS---LSISHVEESDSGVW 289
           +  D SV + C + +   L  +   K  +  E   R++    +     I H++ + +G +
Sbjct: 20  IPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRY 79

Query: 290 NCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVK 349
            C               ++ +       S  L +       K  LSA       R L + 
Sbjct: 80  QCQYRIGHY--------RFRY-------SDTLELVVTGLYGKPFLSA------DRGLVLM 118

Query: 350 KDESVILPCSAQGNPLPTI 368
             E++ L CS+   P    
Sbjct: 119 PGENISLTCSSAHIPFDRF 137

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 48.8 bits (116), Expect = 2e-07
 Identities = 14/84 (16%), Positives = 36/84 (42%), Gaps = 13/84 (15%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKW--------YKQDSPVEESDRIQRIGS-----SLSI 278
           + V++ +++ L C        +++W        +  + PV ++ + Q +       S+++
Sbjct: 11  ITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITV 70

Query: 279 SHVEESDSGVWNCVANNSEGQDKM 302
            +V   D GV+ C+  +     K 
Sbjct: 71  PNVTLQDEGVYKCLHYSDSVSTKE 94

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 38.4 bits (89), Expect = 7e-04
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 19/79 (24%)

Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRNSDEV-----------------LV 62
          + V+ G  + L C  S ++ SS   WL   G  +  N   V                 + 
Sbjct: 11 ITVEEGQTLTLKCVTSLRKNSSL-QWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSIT 69

Query: 63 LDRVQREDAGMYQCHVSAD 81
          +  V  +D G+Y+C   +D
Sbjct: 70 VPNVTLQDEGVYKCLHYSD 88

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQD----SPVEESDRIQRIGS-SLSISHVEES 284
           R LN+ +     L C     P+ ++KW   +    S      RI  +   +L+ SHV  S
Sbjct: 360 RDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLS 417

Query: 285 DSGVWNCVANNSEGQD 300
           D+GV+ C+  N  G  
Sbjct: 418 DTGVYTCMVTNVAGNS 433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 13/70 (18%)

Query: 20  QVVVDVGHRIELHCRVSPKRLSSAKAWLKD-GLVLRRNSDEV---------LVLDRVQRE 69
            + +  G   EL CR  P    S+  WL   G VL   S            L    V   
Sbjct: 361 DLNISEGRMAELKCRTPPM---SSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLS 417

Query: 70  DAGMYQCHVS 79
           D G+Y C V+
Sbjct: 418 DTGVYTCMVT 427

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 8e-05
 Identities = 19/72 (26%), Positives = 25/72 (34%), Gaps = 13/72 (18%)

Query: 100 IASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKD-GLVLRRNSDEV---------LVLD 149
           + +   + +  G   EL CR  P    S+  WL   G VL   S            L   
Sbjct: 356 MDAPRDLNISEGRMAELKCRTPPM---SSVKWLLPNGTVLSHASRHPRISVLNDGTLNFS 412

Query: 150 RVQREDAGMYQC 161
            V   D G+Y C
Sbjct: 413 HVLLSDTGVYTC 424

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 28/198 (14%), Positives = 59/198 (29%), Gaps = 38/198 (19%)

Query: 103 SNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
           S Q+   V   +  H   +              ++ ++  D+V  L+  +      ++  
Sbjct: 2   SQQIYGVVYGNVTFHVPSNVP---------LKEVLWKKQKDKVAELENSEFRAFSSFK-- 50

Query: 163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSA 222
             +  Y    SG L I+ +  SD    Y+    N          +  +  L   + +   
Sbjct: 51  --NRVYLDTVSGSLTIYNLTSSDE-DEYEMESPN--------ITDTMKFFLYVLEMV--- 96

Query: 223 AKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVE 282
                K  I    +  +  L C         +K Y+    +             ++S+  
Sbjct: 97  ----SKPMI--YWECSNATLTCEVLEGTDVELKLYQGKEHLRS-------LRQKTMSYQW 143

Query: 283 ESDSGVWNCVANNSEGQD 300
            +    + C A N   Q+
Sbjct: 144 TNLRAPFKCKAVNRVSQE 161

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 48.0 bits (114), Expect = 6e-07
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 15/85 (17%)

Query: 238 ESVILPCSAQGNPLPTIKWYKQDSPVEE------------SDRIQRIGS--SLSISHVEE 283
            +V     +   PL  + W KQ   V E             +R+       SL+I ++  
Sbjct: 11  GNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTS 69

Query: 284 SDSGVWNCVANNSEGQDKMQLFIQY 308
           SD   +   + N     K  L++  
Sbjct: 70  SDEDEYEMESPNITDTMKFFLYVLE 94

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 22/169 (13%), Positives = 41/169 (24%), Gaps = 37/169 (21%)

Query: 18  SGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG-LVLRRNSDEV---------------- 60
           S Q+   V   +  H   +         W K    V    + E                 
Sbjct: 2   SQQIYGVVYGNVTFHVPSNVP--LKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVS 59

Query: 61  --LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHC 118
             L +  +   D   Y+       D+ +    V+      E+ S   +  +  +   L C
Sbjct: 60  GSLTIYNLTSSDEDEYEMESPNITDTMKFFLYVL------EMVSKPMIYWECSN-ATLTC 112

Query: 119 RV---SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIE 164
            V   +   L       +    L   S     +          ++C   
Sbjct: 113 EVLEGTDVELK----LYQGKEHL--RSLRQKTMSYQWTNLRAPFKCKAV 155

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 49.6 bits (118), Expect = 2e-07
 Identities = 24/205 (11%), Positives = 56/205 (27%), Gaps = 27/205 (13%)

Query: 105 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR-RNSDEVLVLDRVQREDAGMYQCHI 163
            V  +V     L C  +          L    +   +    VL +          Y+   
Sbjct: 3   HVTKEVKEVATLSCGHNVSVEE-----LAQTRIYWQKEKKMVLTMMSGDMNIWPEYK--- 54

Query: 164 EDGKYHMLSSGE--LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLS 221
              +     +    ++I  +  SD   +Y+C  V K    +    +   ++L+       
Sbjct: 55  --NRTIFDITNNLSIVILALRPSDE-GTYECV-VLKYEKDAFKREHLAEVTLSVKA---- 106

Query: 222 AAKMFEKHRILNVKKDESVILPCSAQG-NPLPTIKWYKQD---SPVEESDRIQRIGSSLS 277
                       +       + CS  G  P P + W +     + +  +          +
Sbjct: 107 -DFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYA 165

Query: 278 IS---HVEESDSGVWNCVANNSEGQ 299
           +S       + +  + C+      +
Sbjct: 166 VSSKLDFNMTTNHSFMCLIKYGHLR 190

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 45.4 bits (107), Expect = 7e-06
 Identities = 33/218 (15%), Positives = 60/218 (27%), Gaps = 61/218 (27%)

Query: 20  QVVVDVGHRIELHCRVSPKRLSSAKA---WLKDG---LVLRRNSDEV------------- 60
            V  +V     L C  +      A+    W K+    L +      +             
Sbjct: 3   HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDIT 62

Query: 61  ----LVLDRVQREDAGMYQCHVSADDDS-------AQMSAQVILGGELVEIASSNQVVVD 109
               +V+  ++  D G Y+C V   +         A+++  V        I   +   + 
Sbjct: 63  NNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSI---SDFEIP 119

Query: 110 VGHRIELHCRVS---PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED 165
             +   + C  S   P+  LS    WL++G  L   +  V                  E 
Sbjct: 120 TSNIRRIICSTSGGFPEPHLS----WLENGEELNAINTTVSQDP--------------ET 161

Query: 166 GKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASL 203
             Y + S   L  +         S+ C         + 
Sbjct: 162 ELYAVSSK--LDFN----MTTNHSFMCLIKYGHLRVNQ 193

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 42.3 bits (99), Expect = 8e-05
 Identities = 26/163 (15%), Positives = 43/163 (26%), Gaps = 43/163 (26%)

Query: 231 ILNVKKD--ESVILPC----SAQGNPLPTIKWYKQDSPV------------EESDRIQRI 272
           +++V K+  E   L C    S +      I W K+   V            E  +R    
Sbjct: 1   VIHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD 60

Query: 273 GS---SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEK 329
            +   S+ I  +  SD G + CV    E     +  +               I       
Sbjct: 61  ITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSI------- 113

Query: 330 NKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLPTIKYR 371
                             +       + CS  G  P P + + 
Sbjct: 114 --------------SDFEIPTSNIRRIICSTSGGFPEPHLSWL 142

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 48.3 bits (115), Expect = 6e-07
 Identities = 26/199 (13%), Positives = 63/199 (31%), Gaps = 40/199 (20%)

Query: 102 SSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG---LVLRRNSDEVLVLDRVQREDAGM 158
           S   V    G  + L     P        WL      ++    + +  V +        +
Sbjct: 5   SVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFE-------SV 57

Query: 159 YQCHIEDGKYHML-SSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENK 217
           ++      +  +  ++G L I+ V + DR   Y  R +++       + ++ ++++   +
Sbjct: 58  FK-----DRVDLDKTNGALRIYNVSKEDR-GDYYMRMLHE-------TEDQWKITMEVYE 104

Query: 218 RLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLS 277
            +        K  I    +  +  L C         +K Y+    +             +
Sbjct: 105 MV-------SKPMI--YWECSNATLTCEVLEGTDVELKLYQGKEHLRS-------LRQKT 148

Query: 278 ISHVEESDSGVWNCVANNS 296
           +S+   +    + C A N 
Sbjct: 149 MSYQWTNLRAPFKCKAVNR 167

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 41.8 bits (98), Expect = 9e-05
 Identities = 24/169 (14%), Positives = 40/169 (23%), Gaps = 37/169 (21%)

Query: 21  VVVDVGHRIELHCRVSPKRLSSAKAWLK--DGLVLRRNSDEV------------------ 60
           V    G  + L     P        WL   +  +L    +                    
Sbjct: 9   VNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTN 68

Query: 61  --LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHC 118
             L +  V +ED G Y   +   +   Q    +      V    S  ++        L C
Sbjct: 69  GALRIYNVSKEDRGDYYMRML-HETEDQWKITME-----VYEMVSKPMIYWECSNATLTC 122

Query: 119 RV---SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIE 164
            V   +   L       +    LR  S     +          ++C   
Sbjct: 123 EVLEGTDVELK----LYQGKEHLR--SLRQKTMSYQWTNLRAPFKCKAV 165

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 13/74 (17%)

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDS--------PVEESDRIQRIGS-----SLSISH 280
           V +  + IL C    N   +++W                  +RI+ + +     S+S+S 
Sbjct: 18  VVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSD 77

Query: 281 VEESDSGVWNCVAN 294
           V  SD G + C   
Sbjct: 78  VSLSDEGQYTCSLF 91

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 22/91 (24%)

Query: 21  VVVDVGHRIELHCRVSPKRLSSAKAWLKDGL-----------------VLRRNSDEV-LV 62
           V V  G    L CRV     +++  W                      ++R +  E+ + 
Sbjct: 16  VTVVEGGTAILTCRVDQND-NTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSIS 74

Query: 63  LDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93
           +  V   D G Y C +         +++  L
Sbjct: 75  VSDVSLSDEGQYTCSLFTMP---VKTSKAYL 102

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 40.6 bits (95), Expect = 8e-05
 Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 20/88 (22%)

Query: 94  GGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGL----------------- 136
           G +     + N V V  G    L CRV     +++  W                      
Sbjct: 5   GSQGQFPLTQN-VTVVEGGTAILTCRVDQND-NTSLQWSNPAQQTLYFDDKKALRDNRIE 62

Query: 137 VLRRNSDEV-LVLDRVQREDAGMYQCHI 163
           ++R +  E+ + +  V   D G Y C +
Sbjct: 63  LVRASWHELSISVSDVSLSDEGQYTCSL 90

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 47.5 bits (112), Expect = 2e-06
 Identities = 40/227 (17%), Positives = 65/227 (28%), Gaps = 49/227 (21%)

Query: 105 QVVVDVGHRIELHCRVSPKRLSSAKA------WLKDG------LVLRRNSDEVLVLDRVQ 152
            V V  G  + + C  S    S   +      W +DG       V+  N+ +  V    Q
Sbjct: 9   SVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQ 68

Query: 153 REDAGMYQCHIEDGKYHMLSSGE-----LIIHQVDESDRYRSYQCRGVNKLTGASLLSVN 207
                        G++ +L   +     L I      D   SY  R              
Sbjct: 69  -------------GRFRLLGDVQKKNCSLSIGDARMEDT-GSYFFRVERG---------R 105

Query: 208 RGRLSLTENKRLLSAAKMFEKHRIL---NVKKDESVILPCS----AQGNPLPTIKWYKQD 260
             + S  +NK  L    + EK  I     ++      L CS     +  P  T  W    
Sbjct: 106 DVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNA 165

Query: 261 SPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
               + +  +   S L+++   E       C       Q   +  +Q
Sbjct: 166 LSPLDPETTR--SSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQ 210

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 27/170 (15%), Positives = 51/170 (30%), Gaps = 23/170 (13%)

Query: 8   KSSLSIEMSPSGQVVVDVGHRIELHCRVSPK-------RLSSAKAWLKDGLVLRRNSDEV 60
           K  +  E       +V    ++ + C+ +            S  A  +     R N  + 
Sbjct: 7   KPFIWAEPHF----MVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPKPPERINKVK- 61

Query: 61  LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELV----EIASSNQVVVDVGHRIEL 116
             +  +    AG Y C     +  ++ S  + L    +     ++      V  G ++  
Sbjct: 62  FYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTF 121

Query: 117 HCRVSPKRLSSAKAWLKDGLVL-----RRNSDEVLVLDRVQREDAGMYQC 161
           +CR      +S    LK+G                 L  V     G Y+C
Sbjct: 122 YCR--LDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRC 169

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 26/197 (13%), Positives = 50/197 (25%), Gaps = 46/197 (23%)

Query: 107 VVDVGHRIELHCRVSPK-------RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMY 159
           +V    ++ + C+ +            S  A  +     R N  +   +  +    AG Y
Sbjct: 17  MVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPKPPERINKVK-FYIPDMNSRMAGQY 75

Query: 160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRL 219
            C    G+     S  L +                V ++     LSV+ G          
Sbjct: 76  SCIYRVGELWSEPSNLLDLV---------------VTEMYDTPTLSVHPGP--------- 111

Query: 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSIS 279
                         V   E V   C             K+           ++ +   + 
Sbjct: 112 -------------EVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQRGYGKVQAEFPLG 157

Query: 280 HVEESDSGVWNCVANNS 296
            V  +  G + C  + +
Sbjct: 158 PVTTAHRGTYRCFGSYN 174

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 45.6 bits (108), Expect = 6e-06
 Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 8   KSSLSIEMSPSGQVVVDVGHRIELHCRVSPK-------RLSSAKAWLKDGLVLRRNSDEV 60
           K  +  E       +V    ++ + C+ +            S  A  +     R N  + 
Sbjct: 4   KPFIWAEPHF----MVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPKPPERINKVK- 58

Query: 61  LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQV--------VVDVGH 112
             +  +    AG Y C     +  ++ S  +    +LV     +           V  G 
Sbjct: 59  FYIPDMNSRMAGQYSCIYRVGELWSEPSNLL----DLVVTEMYDTPTLSVHPGPEVISGE 114

Query: 113 RIELHCRVSPKRLSSAKAWLKDG--LVLRRNSDE---VLVLDRVQREDAGMYQC 161
           ++  +CR+     +S    LK+G    ++R   +      L  V     G Y+C
Sbjct: 115 KVTFYCRLDTA--TSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRC 166

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 45.2 bits (107), Expect = 8e-06
 Identities = 27/175 (15%), Positives = 59/175 (33%), Gaps = 28/175 (16%)

Query: 8   KSSLSIEMSPSGQVVVDVGHRIELHCRVSPK-------RLSSAKAWLKDGLVLRRNSDEV 60
           K +L  E       V+  G+ + + C+ + +       +  S   W +   +  +N    
Sbjct: 5   KPTLWAEPGS----VISWGNSVTIWCQGTLEAREYRLDKEESPAPWDRQNPLEPKNKAR- 59

Query: 61  LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGE----LVEIASSNQVVVDVGHRIEL 116
             +  +  + AG Y+C+  +    +Q S  + L          +++    +V  G  + L
Sbjct: 60  FSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTL 119

Query: 117 HCRVSPKRLSSAKAWLKDG---LVLRRNSDEV-------LVLDRVQREDAGMYQC 161
            C+   +         K+     +L   S+           +  V     G Y+C
Sbjct: 120 LCQ--SRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRC 172

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 25/174 (14%), Positives = 56/174 (32%), Gaps = 25/174 (14%)

Query: 8   KSSLSIEMSPSGQVVVDVGHRIELHCRVSPK-------RLSSAKAWLKDGLVLRRNSDEV 60
           K++L  E       V+  G+ + + C+ + +       +  S + W     +  +N    
Sbjct: 5   KATLWAEPGS----VISRGNSVTIRCQGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKAR- 59

Query: 61  LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGEL----VEIASSNQVVVDVGHRIEL 116
             +  +    AG Y+C+  +    ++ S  + L          +++    VV  G  + L
Sbjct: 60  FSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTL 119

Query: 117 HCRVSP--------KRLSSAKAWLKDGLVLRRNSDEV-LVLDRVQREDAGMYQC 161
            C            +      +W  D  +      +    +  V      M +C
Sbjct: 120 QCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRC 173

>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590

 Score = 45.0 bits (105), Expect = 3e-05
 Identities = 9/71 (12%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 224 KMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS-SLSISHVE 282
                 + +++  +    L C  + +   T  W  +++  +  +   +  +  L I ++ 
Sbjct: 502 PDKAPLQKVSLAPNSRYYLSCPME-SRHATYSWRHKENVEQSCEPGHQSPNCILFIENLT 560

Query: 283 ESDSGVWNCVA 293
               G + C A
Sbjct: 561 AQQYGHYFCEA 571

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 42.1 bits (98), Expect = 3e-05
 Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 16/90 (17%)

Query: 227 EKHRILNVKKDESVILPCSAQGNPL---PTIKWYK---QDSPVEESDRIQ---------- 270
           +K   ++V+  +  ++     G  L   PTIKW+K    +   +   R            
Sbjct: 17  KKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASN 76

Query: 271 RIGSSLSISHVEESDSGVWNCVANNSEGQD 300
                L I  V   D G +       +  D
Sbjct: 77  VYTVELHIGKVVLGDRGYYRLEVKAKDTCD 106

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 42.5 bits (99), Expect = 3e-05
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 13/84 (15%)

Query: 233 NVKKDESVILPCSAQGNPLPTIKWYKQDS--------PVEESDRIQRIGS-----SLSIS 279
            V    +V+L C  + +   +++W                  +RIQ + S     S+SIS
Sbjct: 49  TVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISIS 108

Query: 280 HVEESDSGVWNCVANNSEGQDKMQ 303
           +V  +D G + C       +    
Sbjct: 109 NVALADEGEYTCSIFTMPVRTAKS 132

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 41.8 bits (98), Expect = 4e-05
 Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 17/84 (20%)

Query: 232 LNVKKDESVILPCSAQGNPLP--TIKWYKQDSPV-------------EESDRIQRIGS-S 275
           ++ +K  S+IL C           + W +QD  +                DR+       
Sbjct: 13  ISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLG 72

Query: 276 LSISHVEESDSGVWNC-VANNSEG 298
           L++  +  +D+G + C      +G
Sbjct: 73  LTLQSLTVNDTGEYFCIYHTYPDG 96

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C* Length = 210

 Score = 43.1 bits (101), Expect = 4e-05
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 20/94 (21%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQD--------------SPVEESDRIQ------R 271
           L + + ++  L C+   +P   ++WYKQD                 + + R         
Sbjct: 13  LIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADT 72

Query: 272 IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLF 305
             SSL I+  + SDS  + CV ++         F
Sbjct: 73  KQSSLHITASQLSDSASYICVVSDRGSTLGRLYF 106

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 40.9 bits (95), Expect = 6e-05
 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 239 SVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI---GSSLSISHVEE-SDSGVWNCVAN 294
           +VIL C     P   I W   D  +   +  + I      LS+    E   SG + C   
Sbjct: 23  TVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPR 80

Query: 295 NSEGQDK 301
            S+ +D 
Sbjct: 81  GSKPEDA 87

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B* Length = 120

 Score = 41.1 bits (96), Expect = 7e-05
 Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 22/81 (27%)

Query: 238 ESVILPC----SAQGNPLPTIKWYKQD------------------SPVEESDRIQRIGSS 275
            S  LPC    S     + ++ W++ +                  +P+  S  +    + 
Sbjct: 23  SSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAE 82

Query: 276 LSISHVEESDSGVWNCVANNS 296
           L I  V   D+ ++ C     
Sbjct: 83  LHIRDVRGHDASIYVCRVEVL 103

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 43.6 bits (101), Expect = 7e-05
 Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 226 FEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVE--ESDRIQRIGSSLSISHVEE 283
              +R    K   +  L CS + N L  + W  Q+  ++            +L I ++ E
Sbjct: 537 KGSYRQHFFKHGGTAELKCSQKSN-LARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSE 595

Query: 284 SDSGVWNCVA-NNSEGQDKMQLFIQY 308
            DSGV+ C++    + +   Q+  ++
Sbjct: 596 GDSGVYQCLSEERVKNKTVFQVVAKH 621

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 42.7 bits (100), Expect = 8e-05
 Identities = 28/179 (15%), Positives = 51/179 (28%), Gaps = 33/179 (18%)

Query: 8   KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLV----------LRRNS 57
           K SL     P    +V     + L C    +         ++G                S
Sbjct: 7   KPSLLAHPGP----LVKSEETVILQCWSDVR--FQHFLLHREGKFKDTLHLIGEHHDGVS 60

Query: 58  DEVLVLDRVQREDAGMYQCHVSADDDSAQMSA-------QVILGGELVEIASSNQVVVDV 110
                +  + ++ AG Y+C+ S      Q+SA        +    E   +++     V  
Sbjct: 61  KANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLA 120

Query: 111 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDR--------VQREDAGMYQC 161
           G  + L C  S +         ++G    R       ++               G Y+C
Sbjct: 121 GESVTLSC--SSRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRC 177

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 11/90 (12%), Positives = 21/90 (23%), Gaps = 13/90 (14%)

Query: 16 SPSGQVVVDVGHRIELHCRVSPKRLSSAKA------WLKDGLVLRR------NSDEVLVL 63
          SP   VV  +       C +  K +           W  +   + +      N     V 
Sbjct: 9  SPESPVVQ-LHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVT 67

Query: 64 DRVQREDAGMYQCHVSADDDSAQMSAQVIL 93
                      C++       Q    + +
Sbjct: 68 FTDIASLNIQLTCNILTFGQLEQNVYGITI 97

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} Length = 259

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 31/181 (17%), Positives = 59/181 (32%), Gaps = 42/181 (23%)

Query: 146 LVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLS 205
           ++L  +   D+G+Y C   D  Y+    G      V +         +   K  GA  ++
Sbjct: 81  MILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVT 140

Query: 206 VNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PLPTIKWYKQ----- 259
             +  +S+                        ++V L C  + +     I WYK+     
Sbjct: 141 QAQSSVSMPV---------------------RKAVTLNCLYETSWWSYYIFWYKRLPSKE 179

Query: 260 ---------DSPVEESDR--IQRIGS----SLSISHVEESDSGVWNCVANNSEGQDKMQL 304
                    D    +S R  +    +    +L+IS ++  DS  + C    S  +    +
Sbjct: 180 MIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGESLTRADKLI 239

Query: 305 F 305
           F
Sbjct: 240 F 240

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 29/179 (16%), Positives = 49/179 (27%), Gaps = 34/179 (18%)

Query: 8   KSSLSIEMSPSGQVVVDVGHRIELHCRVSPK-------RLSSAKAWLKDGLVLRRNSDEV 60
           K +L  E  P    V+  G  + L C+   +       R      W+           + 
Sbjct: 5   KPTLWAE--PGS--VITQGSPVTLRCQGGQETQEYRLYREKKTAPWITRIPQELVKKGQ- 59

Query: 61  LVLDRVQREDAGMYQC-------HVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHR 113
             +  +  E  G Y+C         S   D  ++          +    S   VV+ G  
Sbjct: 60  FPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSP--VVNSGGN 117

Query: 114 IELHCRVSPKRLSSAKAWLKDG---LVLRRNSDE--------VLVLDRVQREDAGMYQC 161
           + L C    +         K+G        NS          +  +  V       Y+C
Sbjct: 118 VTLQCDS--QVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRC 174

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} Length = 401

 Score = 41.5 bits (96), Expect = 3e-04
 Identities = 26/154 (16%), Positives = 41/154 (26%), Gaps = 15/154 (9%)

Query: 45  AWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGG--ELVEIAS 102
           AW  D        +    L RVQ    G Y   +       Q++ ++ +    ++  + +
Sbjct: 240 AWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPA 299

Query: 103 SNQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMY 159
           +           EL C VS   P      + W   G    R+                  
Sbjct: 300 TLARAAPGEAPPELLCLVSHFYPSGGLEVE-WELRGGPGGRSQKAEGQRWLSALRHHS-- 356

Query: 160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCR 193
                DG   +     L    V        Y CR
Sbjct: 357 -----DGSVSLSGH--LQPPPVTTEQHGARYACR 383

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 29/177 (16%), Positives = 49/177 (27%), Gaps = 29/177 (16%)

Query: 8   KSSLSIEMSPSGQVVVDVGHRIELHCRVSP--------KRLSSAKAWLKDGLVLRRNSDE 59
           K SL     P    +V     + L C            +           G      S  
Sbjct: 8   KPSLLAHPGP----LVKSEETVILQCWSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKA 63

Query: 60  VLVLDRVQREDAGMYQCHVSADDDSAQMSA-------QVILGGELVEIASSNQVVVDVGH 112
              + R+ ++ AG Y+C+ S      Q+SA        +I   E   +++     V  G 
Sbjct: 64  NFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGE 123

Query: 113 RIELHCRVSPKRLSSAKAWLKDG--------LVLRRNSDEVLVLDRVQREDAGMYQC 161
            + L C    +         ++G           + N               G Y+C
Sbjct: 124 NVTLSCS--SRSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRC 178

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 22/99 (22%), Positives = 27/99 (27%), Gaps = 16/99 (16%)

Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIE- 164
           V V  G        +S         W  +G  L+ N  E  V     R         IE 
Sbjct: 18  VQVYDGEDAVFSLDLSTI---IQGTWFLNGEELKSNEPEGQVEPGALR-------YRIEQ 67

Query: 165 DGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASL 203
            G  H      LI+H V   D               A+L
Sbjct: 68  KGLQH-----RLILHAVKHQDSGALVGFSCPGVQDSAAL 101

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B Length = 113

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 20/92 (21%)

Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQD------------SPVEESDRI-QRIG--- 273
             L++ +     L C+     + +++W++Q+            S  +E+ R+        
Sbjct: 9   SALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSER 67

Query: 274 ---SSLSISHVEESDSGVWNCVANNSEGQDKM 302
              S+L I   +  DSG + C A  S G  ++
Sbjct: 68  ARYSTLHIRDAQLEDSGTYFCAAEASSGSWQL 99

>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A Length = 203

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 20/88 (22%)

Query: 238 ESVILPCSAQGNPLPTIKWYKQD---SPV--------EESDRIQRIG---------SSLS 277
           E+++L CS   + +  ++W++QD              +      R+          S+L 
Sbjct: 16  ENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLY 75

Query: 278 ISHVEESDSGVWNCVANNSEGQDKMQLF 305
           I+  +  DS  + C    + G   +  F
Sbjct: 76  IAASQPGDSATYLCAVRPTSGGSYIPTF 103

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139

 Score = 38.8 bits (90), Expect = 5e-04
 Identities = 19/101 (18%), Positives = 26/101 (25%), Gaps = 31/101 (30%)

Query: 100 IASSNQVVVDVGHRIELHCRVSP-------------KRLSSAKAWLKDGLVLRRNSDEV- 145
           I   + +   VG   EL CR+SP                S      ++G           
Sbjct: 10  IGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEY 69

Query: 146 -----------------LVLDRVQREDAGMYQCHIEDGKYH 169
                            L +  V+  D G Y C   D  Y 
Sbjct: 70  RGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQ 110

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 61/224 (27%)

Query: 11  LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAK----AW-------------------- 46
           L +EM   G  +  +   + + C +   +  +       W                    
Sbjct: 3   LKVEMMAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDH 62

Query: 47  ---LKDGLVLRRNS----DEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVE 99
               + G ++        D  L L  +Q E+AG Y+C V      AQ       G   +E
Sbjct: 63  QEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQ-------GTVQLE 115

Query: 100 IASSNQV------VVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVL-VLD 149
           + +S         V    +  +  C  S   P+ ++    W K         +    V+ 
Sbjct: 116 VVASPASRLLLDQVGMKENEDKYMCESSGFYPEAINI--TWEKQTQKFPHPIEISEDVIT 173

Query: 150 RVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCR 193
               ++         DG +++ S  +L      + D    YQC 
Sbjct: 174 GPTIKN--------MDGTFNVTSCLKLN---SSQEDPGTVYQCV 206

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A* Length = 109

 Score = 38.0 bits (88), Expect = 6e-04
 Identities = 19/80 (23%), Positives = 26/80 (32%), Gaps = 26/80 (32%)

Query: 238 ESVILPCS---AQGNPLPTIKWYKQDSPV-----------------EESDRIQRIGS--- 274
           ++  LPCS        L  + W K   P                  ++S R Q  G    
Sbjct: 10  KNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNK 69

Query: 275 ---SLSISHVEESDSGVWNC 291
              SL I +V   D G + C
Sbjct: 70  GDVSLIIKNVTLDDHGTYCC 89

>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens} Length = 199

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 14/79 (17%), Positives = 23/79 (29%), Gaps = 20/79 (25%)

Query: 238 ESVILPCSAQGNPLPTIKWYKQD--------------SPVEESDRIQ------RIGSSLS 277
           +S    CS   +    + WY+ +                 ++  RI          S L 
Sbjct: 16  DSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNTKEGYSYLY 75

Query: 278 ISHVEESDSGVWNCVANNS 296
           I   +  DS  + C  N  
Sbjct: 76  IKGSQPEDSATYLCARNTG 94

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118

 Score = 38.3 bits (89), Expect = 7e-04
 Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 28/89 (31%)

Query: 238 ESVILPCSAQGNPLPT-----IKWYKQDSP-------------VEESDRIQRIGS----- 274
           +SV LPC  Q   +       + W +                   ES R++ + +     
Sbjct: 16  DSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAE 75

Query: 275 ----SLSISHVEESDSGVWNC-VANNSEG 298
               SL +  +   D G + C      +G
Sbjct: 76  LRNASLRMFGLRVEDEGNYTCLFVTFPQG 104

>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ... Length = 208

 Score = 39.6 bits (92), Expect = 7e-04
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 19/93 (20%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQD---SPV----------EESDRIQ------RI 272
           L+V +     L C++         WY+Q     P           ++  R         +
Sbjct: 12  LSVPEGGMASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLNKASL 71

Query: 273 GSSLSISHVEESDSGVWNCVANNSEGQDKMQLF 305
             SL I   + SDS ++ C A+      +   F
Sbjct: 72  HVSLHIRDSQPSDSALYFCAASEQNNYAQGLTF 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	371
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	100.0
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	100.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	100.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	100.0
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	100.0
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	100.0
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	100.0
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	100.0
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	100.0
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	100.0
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	100.0
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	100.0
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	100.0
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	100.0
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	100.0
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	100.0
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	100.0
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	100.0
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.98
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.98
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.97
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.97
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.97
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.97
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.97
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.97
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.96
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.96
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.96
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.96
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.96
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.95
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.95
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.94
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.94
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.94
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.94
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.94
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.94
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.93
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.93
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.93
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.93
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.93
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.93
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.93
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.93
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.93
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.93
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.93
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.93
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.93
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.93
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.93
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.92
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.92
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.92
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.92
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.92
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.92
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.92
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.92
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.92
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.92
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.92
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.92
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.92
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.92
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.92
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.92
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.92
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.92
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.91
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.91
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.91
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.91
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.91
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.91
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.91
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.91
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.91
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.91
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.91
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.91
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.91
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.91
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.91
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.9
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.9
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.9
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.9
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.9
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.9
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.9
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.9
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.9
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.9
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.9
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.9
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.9
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.9
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.89
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.89
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.89
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.89
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.89
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.89
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.89
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.89
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.89
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.89
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.89
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.89
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.89
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.88
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.88
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.88
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.88
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.88
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.88
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.88
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.88
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.88
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.88
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.88
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.88
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.88
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.88
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.87
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.87
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.87
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.87
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.87
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.87
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.87
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.87
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.87
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.87
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.87
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.86
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.86
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.86
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.86
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.86
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.86
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.86
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.86
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.86
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.86
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.86
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.85
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.85
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.85
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.85
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.85
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.85
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.85
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.84
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.84
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.84
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.84
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.84
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.84
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.84
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.83
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.83
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.83
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.83
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.83
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.83
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.83
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.83
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.83
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.82
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.82
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.82
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.82
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.82
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.82
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.82
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.81
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.81
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.81
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.81
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.81
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.81
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.81
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.81
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.81
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.81
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.81
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.8
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.8
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.8
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.8
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.8
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.8
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.8
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.8
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.8
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.8
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.8
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.8
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.8
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.8
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.79
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.79
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.79
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.79
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.79
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.79
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.79
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.78
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.78
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.78
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.78
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.78
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.78
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.78
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.78
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.78
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.77
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.77
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.77
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.77
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.77
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.77
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.77
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.77
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.77
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.77
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.77
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.76
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.76
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.76
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.76
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.76
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.76
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.76
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.76
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.76
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.76
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.76
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.76
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.76
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.76
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.76
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.75
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.75
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.75
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.75
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.75
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.75
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.75
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.75
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.75
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.75
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.75
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.75
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.75
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.75
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.74
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.74
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.74
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.74
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.74
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.74
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.74
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.74
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.74
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.74
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.74
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.74
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.74
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.73
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.73
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.73
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.72
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.72
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.72
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.72
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.72
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.72
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.72
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.71
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.71
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.71
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.71
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.71
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.71
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.71
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.71
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.71
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.71
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.71
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.71
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.71
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.71
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.71
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.7
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.7
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.7
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.7
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.7
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.7
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.7
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.7
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.69
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.69
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.69
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.69
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.69
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.68
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.68
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.68
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.68
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.67
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.67
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.67
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.67
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.67
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.66
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.66
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.66
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.66
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.66
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.66
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.65
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.65
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.65
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.65
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.65
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.65
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.65
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.65
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.64
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.64
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.64
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.64
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.63
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.62
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.62
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.62
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.62
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.62
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.62
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.62
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.61
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.61
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.61
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.61
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.6
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.6
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.6
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.59
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.59
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.59
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.59
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.59
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.59
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.59
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.59
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.59
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.59
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.58
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.58
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.58
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.58
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.58
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.58
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.58
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.58
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.58
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.57
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.57
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.57
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.57
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.57
1he7_A	126	High affinity nerve growth factor receptor; transf	99.57
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.56
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.56
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.55
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.55
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.54
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.54
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.54
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.54
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.53
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.52
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.52
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.52
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.52
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.52
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.52
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.51
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.51
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.51
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.5
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.5
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.5
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.5
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.5
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.5
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.5
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.49
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.49
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.49
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.49
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.49
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.49
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.49
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.49
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.49
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.48
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.48
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.48
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.48
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.48
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.47
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.47
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.47
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.47
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.47
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.47
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.46
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.45
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.45
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.45
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.45
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.45
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.45
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.44
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.44
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	99.44
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.44
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.43
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.43
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.43
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.43
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.43
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.43
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.42
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.42
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.42
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.41
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.41
2ens_A	96	Advanced glycosylation END product-specific recept	99.41
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.41
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.41
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.4
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.4
2ens_A	96	Advanced glycosylation END product-specific recept	99.4
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.39
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.39
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.39
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.39
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.39
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.38
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.38
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.38
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.38
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.37
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.37

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=3.9e-43  Score=322.56  Aligned_cols=326  Identities=22%  Similarity=0.389  Sum_probs=257.3

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEE
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHV   78 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~   78 (371)
                      ..+|.+...+.. +.+.+|+.++|.|.+ .+.|.+.+.|+|++..+...         ...+|.|.+++.+|+|.|+|.+
T Consensus         3 ~~pP~f~~~~~~-~~v~~G~~v~L~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   80 (570)
T 3b43_A            3 MEPPYFIEPLEH-VEAAIGEPITLQCKV-DGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKA   80 (570)
T ss_dssp             CCCCEEEECCCC-EEECTTSCEEEEEEE-ESSSSCEEEEECSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCcceEECCc-eEEcCCCEEEEEEEE-ccCCCCEEEEEECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEE
Confidence            345666544444 899999999999954 57788999999998776433         4578999999999999999999


Q ss_pred             EcCCCCeEEEEEEEEec--ceeeEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCC---------eeEE
Q psy14542         79 SADDDSAQMSAQVILGG--ELVEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS---------DEVL  146 (371)
Q Consensus        79 ~~~~~~~~~~~~l~v~~--~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~---------~~~~  146 (371)
                      .|..|.......|.|..  .+|.+...... ....|+.+.|.|.+.+.++ +.++|+++|..+....         ...|
T Consensus        81 ~N~~g~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~-~~v~W~k~g~~l~~~~~~~~~~~~~~~~L  159 (570)
T 3b43_A           81 ENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEP-LQVSWYKDGELLKDDANLQTSFIHNVATL  159 (570)
T ss_dssp             EETTEEEEEEEEEEECCCCCCCEESSCCCCEEEETTSCEEEEEEEESSSS-CEEEEEETTEECCCCSSEEEEEETTEEEE
T ss_pred             EeCCceEEEEEEEEECCCCCCCcccccCCCeEecCCCeEEEEEEEccCCC-CEEEEEECCEECcCCCCEEEEEECCEEEE
Confidence            99888777777777753  34555544433 3378999999999999887 8999999998876432         2468


Q ss_pred             EEcccCcCCCeeEEEEEeCC------------------------------------------------------------
Q psy14542        147 VLDRVQREDAGMYQCHIEDG------------------------------------------------------------  166 (371)
Q Consensus       147 ~~~~~~~~~~g~y~~~~~~~------------------------------------------------------------  166 (371)
                      .+.++..+|.|.|+|.+.+.                                                            
T Consensus       160 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~  239 (570)
T 3b43_A          160 QILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIR  239 (570)
T ss_dssp             EESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECC
T ss_pred             EECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCCCCCCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECCEECc
Confidence            88889999999999766521                                                            


Q ss_pred             ---ceeE--e-ccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeE
Q psy14542        167 ---KYHM--L-SSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESV  240 (371)
Q Consensus       167 ---~~~~--~-~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~  240 (371)
                         ++.+  . ....|.|.++..+| +|.|+|.+.|. .|....+.   .|.|.     .+|.+.........+..|+.+
T Consensus       240 ~~~~~~~~~~~~~~~L~i~~v~~~D-~G~Y~C~a~N~-~g~~~~~~---~l~V~-----~~p~~~~~~~~~~~v~~g~~~  309 (570)
T 3b43_A          240 PGGNYKMTLVENTATLTVLKVTKGD-AGQYTCYASNV-AGKDSCSA---QLGVQ-----EPPRFIKKLEPSRIVKQDEHT  309 (570)
T ss_dssp             TTSSEEEEEETTEEEEEESSBCGGG-CEEEEEEEEET-TEEEEEEE---EECCB-----CCCEEEECCCSBCCEESSCEE
T ss_pred             CCCcEEEEEECCEEEEEEcccCccc-CEEEEEEEECC-CCcEEEEE---EEEee-----cCCcccccCCCccEEcCCCcE
Confidence               0000  0 12358888899999 99999999998 77776666   78887     666665544333237899999


Q ss_pred             EEEEEeecCCCCceEEEeCCcccccCCceEE----ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCccccc
Q psy14542        241 ILPCSAQGNPLPTIKWYKQDSPVEESDRIQR----IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHML  316 (371)
Q Consensus       241 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~  316 (371)
                      .|.|.+.|.|.+.+.|++++..+..+.++..    ..+.|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.   
T Consensus       310 ~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~---  386 (570)
T 3b43_A          310 RYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPV---  386 (570)
T ss_dssp             EEEEEEESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCE---
T ss_pred             EEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCe---
Confidence            9999999999999999999999887766542    235799999999999999999999999999999999998887   


Q ss_pred             ccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        317 SSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                            +.  ..|.              ...+.+|+.+.|.|.+.|.|+|.|+|+
T Consensus       387 ------~~--~~~~--------------~~~~~~G~~v~l~C~~~g~P~p~v~W~  419 (570)
T 3b43_A          387 ------FR--KKPH--------------PVETLKGADVHLECELQGTPPFQVSWH  419 (570)
T ss_dssp             ------EC--SCCC--------------CEEECTTCCEEEEEEEESSSSCCCEEE
T ss_pred             ------ee--cCCC--------------ceeecCCCEEEEEEEEecCCCCEEEEE
Confidence                  44  2221              226779999999999999999999995

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=1.4e-42  Score=318.81  Aligned_cols=302  Identities=20%  Similarity=0.307  Sum_probs=248.0

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVS   79 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~   79 (371)
                      .+|.+...|.. ..+.+|++++|.|.+ .+.|.+.+.|+|++..+...         ....|.|.+++.+|+|.|+|.+.
T Consensus       196 ~pp~~~~~p~~-~~v~~G~~~~l~C~~-~g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~  273 (570)
T 3b43_A          196 VPPFFDLKPVS-VDLALGESGTFKCHV-TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYAS  273 (570)
T ss_dssp             CCCEEEECCCC-BCCBSBSCEEEEEEE-ESSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEE
T ss_pred             CCCccccCCce-eEecCCCeEEEEEEE-EECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEE
Confidence            45677777777 788999999999965 56678899999999887543         35789999999999999999999


Q ss_pred             cCCCCeEEEEEEEEecceeeEecCC--ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCe
Q psy14542         80 ADDDSAQMSAQVILGGELVEIASSN--QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAG  157 (371)
Q Consensus        80 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g  157 (371)
                      |..|.....+.|.|. .+|.+....  ...+.+|+.+.|.|.+.+.|. +.+.|++++..+.....+.+...        
T Consensus       274 N~~g~~~~~~~l~V~-~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~-p~v~W~k~~~~l~~~~~~~~~~~--------  343 (570)
T 3b43_A          274 NVAGKDSCSAQLGVQ-EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPE-IKVLWYKDETEIQESSKFRMSFV--------  343 (570)
T ss_dssp             ETTEEEEEEEEECCB-CCCEEEECCCSBCCEESSCEEEEEEEEESSSS-CEEEEEETTEECCCSSSEEEEEE--------
T ss_pred             CCCCcEEEEEEEEee-cCCcccccCCCccEEcCCCcEEEEEEEeeCCC-CEEEEeECCEECCCCCcEEEEEE--------
Confidence            998888888999988 555544332  233589999999999999887 89999999998876543221110        


Q ss_pred             eEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecC
Q psy14542        158 MYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKD  237 (371)
Q Consensus       158 ~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g  237 (371)
                                   .....|.|.++..+| +|.|+|.+.|. .|....+.   .|.|.     .+|.+...+.... +..|
T Consensus       344 -------------~~~~~L~i~~v~~~D-~G~Y~C~a~N~-~g~~~~~~---~l~V~-----~~P~~~~~~~~~~-~~~G  399 (570)
T 3b43_A          344 -------------ESVAVLEMYNLSVED-SGDYTCEAHNA-AGSASSST---SLKVK-----EPPVFRKKPHPVE-TLKG  399 (570)
T ss_dssp             -------------TTEEEEEEESCCGGG-CEEEEEEEEBT-TBCCEEEE---EECEE-----CCCEECSCCCCEE-ECTT
T ss_pred             -------------CCEEEEEECCCCccc-CEEEEEEEEeC-CCEEEEEE---EEEec-----CCCeeecCCCcee-ecCC
Confidence                         012579999999999 99999999999 77777666   88888     6777777766666 8899


Q ss_pred             CeEEEEEEeecCCCCceEEEeCCcccccCCceEEe--c--ceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542        238 ESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--G--SSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       238 ~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      +.+.|.|.+.|.|.|.+.|++++..+..+.++...  +  .+|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.
T Consensus       400 ~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~  479 (570)
T 3b43_A          400 ADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPR  479 (570)
T ss_dssp             CCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCE
T ss_pred             CEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCc
Confidence            99999999999999999999999998877766532  2  4799999999999999999999999999999999999888


Q ss_pred             cccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        314 HMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                               +.  ..+..              ..+.+|+.+.|.|.+.|.|+|.|+|+
T Consensus       480 ---------~~--~~~~~--------------~~~~~g~~~~l~c~~~g~p~~~v~W~  512 (570)
T 3b43_A          480 ---------FV--KKLSD--------------ISTVVGEEVQLQATIEGAEPISVAWF  512 (570)
T ss_dssp             ---------EE--ECCCC--------------BCCBTTCCEEEEEEEESCSSCCCEEE
T ss_pred             ---------cc--ccCCC--------------ceecCCCeEEEEEEEecCCCCEEEEE
Confidence                     55  22111              26779999999999999999999996

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=9e-39  Score=268.31  Aligned_cols=267  Identities=21%  Similarity=0.325  Sum_probs=218.7

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEE
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHV   78 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~   78 (371)
                      ..+|.+...|.. ..+.+|+.++|.|.+ .+.|.+.+.|++++..+...         ...+|.|.+++.+|+|.|+|.+
T Consensus         3 ~~pP~~~~~p~~-~~~~~G~~v~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   80 (284)
T 2rik_A            3 MAPPFFDLKPVS-VDLALGESGTFKCHV-TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYA   80 (284)
T ss_dssp             CCCCEEEECCCC-EEEETTCCEEEEEEE-ESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             cCCCEEEccccc-eEecCCCcEEEEEEE-EcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEE
Confidence            357888888988 899999999999965 46677899999999887644         4578999999999999999999


Q ss_pred             EcCCCCeEEEEEEEEecceeeEecC-C-ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCC
Q psy14542         79 SADDDSAQMSAQVILGGELVEIASS-N-QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDA  156 (371)
Q Consensus        79 ~~~~~~~~~~~~l~v~~~~~~~~~~-~-~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~  156 (371)
                      .+..+.....+.|.|. .+|.+... . ...+.+|+.+.|.|.+.+.+. +.+.|++++..+...........       
T Consensus        81 ~n~~g~~~~~~~l~V~-~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~-~~v~W~~~~~~~~~~~~~~~~~~-------  151 (284)
T 2rik_A           81 SNVAGKDSCSAQLGVQ-EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPE-IKVLWYKDETEIQESSKFRMSFV-------  151 (284)
T ss_dssp             EETTEEEEEEEEEEEE-CCCEEEECCCSEEEEETTCCEEEEEEEESSSC-CEEEEEETTEECCCSSSEEEEEE-------
T ss_pred             EECCceEEEEEEEEcc-CCCcccccCCCceEecCCceEEEEEEEeeeCC-CEEEEEECCEECcCCCcEEEEEc-------
Confidence            9988888888999998 44444433 3 233589999999999998877 89999999998766543221111       


Q ss_pred             eeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeec
Q psy14542        157 GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKK  236 (371)
Q Consensus       157 g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~  236 (371)
                                    .....|.|.+++.+| .|.|+|.+.+. .|......   .+.|.     .+|.+...+.... +..
T Consensus       152 --------------~~~~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V~-----~~p~~~~~~~~~~-~~~  206 (284)
T 2rik_A          152 --------------ESVAVLEMYNLSVED-SGDYTCEAHNA-AGSASSST---SLKVK-----EPPVFRKKPHPVE-TLK  206 (284)
T ss_dssp             --------------TTEEEEEECSCCGGG-CEEEEEEEECS-SCEEEEEE---EEEEE-----CCCBCCSCCCCEE-ECT
T ss_pred             --------------CCEEEEEECCCCccc-CEEEEEEEEcC-CCceeEEE---EEEEe-----cCCcceeCCCcce-ecC
Confidence                          112579999999999 99999999998 77766666   78887     6777776666666 889


Q ss_pred             CCeEEEEEEeecCCCCceEEEeCCcccccCCceEEec----ceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEec
Q psy14542        237 DESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG----SSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAH  310 (371)
Q Consensus       237 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  310 (371)
                      |+.+.|.|.+.|.|.+.+.|++++..+..+.++....    ..|.|.++..+|+|.|+|.|.|..|....++.|.|.+
T Consensus       207 g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  284 (284)
T 2rik_A          207 GADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA  284 (284)
T ss_dssp             TCCEEEEEECBSSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEECC
T ss_pred             CCeEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEcC
Confidence            9999999999999999999999999988777665322    4799999999999999999999999999999988853

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=1e-39  Score=287.93  Aligned_cols=309  Identities=22%  Similarity=0.425  Sum_probs=234.0

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccC-----CcCCCeEE
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRV-----QREDAGMY   74 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~-----~~~d~G~Y   74 (371)
                      .....+...|+. ..+.+|++++|.|.+..+.|.+.+.|+|+|..+...        .+++|.|.++     +.+|+|.|
T Consensus        19 ~~~~~~~~~P~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~D~G~Y   97 (403)
T 3laf_A           19 RRSLHFVSEPSD-AVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLY   97 (403)
T ss_dssp             CCSSEEEECCCC-EEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEECTTSCEEECSCCCBTTBCSSCEEE
T ss_pred             ceeEEEEeCCCc-eEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEecCCcEEEeeeeccCCCCCcceEE
Confidence            456677788888 999999999999977666788899999999987643        4567888877     67799999


Q ss_pred             EEEEEcCCCCe--EEEEEEEEecceeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEccc
Q psy14542         75 QCHVSADDDSA--QMSAQVILGGELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRV  151 (371)
Q Consensus        75 ~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~  151 (371)
                      +|.+.+..+..  ...+.|.|. .++.+...+. ..+.+|+.+.|.|.+.+.+. +.+.|++++..+.....        
T Consensus        98 ~C~~~~~~~~~~~s~~~~l~v~-~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~-~~v~W~~~~~~~~~~~~--------  167 (403)
T 3laf_A           98 QCEASLGDSGSIISRTAKVMVA-GPLRFLSQTESITAFMGDTVLLKCEVIGDPM-PTIHWQKNQQDLNPIPG--------  167 (403)
T ss_dssp             EEEEECGGGCEEECCCEEEEEC-CCCEECSCCCCEEEETTSCEEECCCEECSSC-CEEEEEESSSBCCCCTT--------
T ss_pred             EEEEEeCCCccEEEEEEEEEec-CCCccccCCCcEEEEcCCeEEEEEEEcccCC-CeEEEEECCEeccccCC--------
Confidence            99998644333  345777777 4555554443 44589999999999988877 79999999887643211        


Q ss_pred             CcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccce-eeeeeccceeeeecchhcc-ccceeeeee
Q psy14542        152 QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKRLL-SAAKMFEKH  229 (371)
Q Consensus       152 ~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~~~-~p~~~~~~~  229 (371)
                                   ..+.....++.|.|.++..+| +|.|+|.+.+. .+. .....   .+.|...+... ++.+...+.
T Consensus       168 -------------~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~~~n~-~~~~~~~~~---~l~v~~~p~~~~~~~~~~~~~  229 (403)
T 3laf_A          168 -------------DSRVVVLPSGALQISRLQPGD-SGVYRCSARNP-ASTRTGNEA---EVRILSDPGLHRQLYFLQRPS  229 (403)
T ss_dssp             -------------CCSEEECTTSCEEECSCCGGG-CEEEEEEEECS-SCCCBCCCE---EEEEECCCCCCEEEEEEECCC
T ss_pred             -------------ceEEEEcCCceEEEccccccc-CEEEEEEEEcC-CCceeccce---eEEEecCCCcccCceEecCCC
Confidence                         113333344689999999999 99999999987 443 22333   56665322111 122333344


Q ss_pred             eeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCc-eE-EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEE
Q psy14542        230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDR-IQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ  307 (371)
Q Consensus       230 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~-~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  307 (371)
                      ... +..|+.+.|.|.+.+.|.+.+.|++++..+..... +. ..++.|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus       230 ~~~-~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  308 (403)
T 3laf_A          230 NVI-AIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELT  308 (403)
T ss_dssp             CEE-EETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             ceE-ecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEE
Confidence            444 88999999999999999999999999988765433 22 3456899999999999999999999999999999999


Q ss_pred             EecCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        308 YAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       308 v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                      |..+|.         +.  ..|.              ...+.+|+.++|.|.+.|.|+|.++|+
T Consensus       309 V~~~p~---------~~--~~~~--------------~~~~~~g~~v~l~C~~~g~p~p~v~W~  347 (403)
T 3laf_A          309 VLVPPW---------FL--NHPS--------------NLYAYESMDIEFECAVSGKPVPTVNWM  347 (403)
T ss_dssp             EEEEEE---------EE--ECCC--------------CEECCTTCCEEECCEEEEESCCEEEEE
T ss_pred             EECCCc---------Ee--ecCc--------------ceEEecCCeEEEEEEEeeccCCEEEEE
Confidence            988887         44  2221              126779999999999999999999995

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=4.7e-39  Score=308.07  Aligned_cols=329  Identities=26%  Similarity=0.430  Sum_probs=254.9

Q ss_pred             eeEEecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542          3 LFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADD   82 (371)
Q Consensus         3 ~~~~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   82 (371)
                      +.|.|..++.+.+.|.. ..+.+|++++|.|.+ .+.|.+.+.|+++|..+.. ....|.|.+++.+|+|.|+|.+.+..
T Consensus       336 ~~l~V~~~~~~~~~~~~-~~v~~G~~v~l~C~~-~g~p~~~v~W~k~g~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~n~~  412 (816)
T 3dmk_A          336 TVLTVTAPLSAKIDPPT-QTVDFGRPAVFTCQY-TGNPIKTVSWMKDGKAIGH-SESVLRIESVKKEDKGMYQCFVRNDR  412 (816)
T ss_dssp             EEEEECEEEEEEEESSE-EECCTTSCEEEEEEE-EEECCCEEEEEETTEECSC-CSSEEEESSCCGGGCEEEEEEEECSS
T ss_pred             EEEEEcCCCceeeCCCc-eEecCCCCEEEEEEE-eccCCCEEEEEECCEECCC-CCCEEEEcCCCHHHCEEEEEEEECCC
Confidence            44666667777888887 889999999999954 5678889999999998875 56789999999999999999999988


Q ss_pred             CCeEEEEEEEEe--cceeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCe--------------eE
Q psy14542         83 DSAQMSAQVILG--GELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD--------------EV  145 (371)
Q Consensus        83 ~~~~~~~~l~v~--~~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~--------------~~  145 (371)
                      +.....+.|.|.  ..+|.+...+. ..+.+|+.+.|.|.+.+.+. +.+.|++++..+.....              ..
T Consensus       413 g~~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~  491 (816)
T 3dmk_A          413 ESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPT-PEISWELDGKKIANNDRYQVGQYVTVNGDVVSY  491 (816)
T ss_dssp             CEEEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSSC-CEEEEEETTEECCSCTTEEEEEEECTTSCEEEE
T ss_pred             CcEEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEecCCC-CEEEEEECCEECCCCCCcccccEEecCCCcEEE
Confidence            877777777764  24555554433 34589999999999999887 89999999988765432              24


Q ss_pred             EEEcccCcCCCeeEEEEEeCCce---------------------------------------------------------
Q psy14542        146 LVLDRVQREDAGMYQCHIEDGKY---------------------------------------------------------  168 (371)
Q Consensus       146 ~~~~~~~~~~~g~y~~~~~~~~~---------------------------------------------------------  168 (371)
                      +.+.++..+|.|.|+|.+.+...                                                         
T Consensus       492 L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~  571 (816)
T 3dmk_A          492 LNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINR  571 (816)
T ss_dssp             EEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSCEECCCCCEEEETTCCEEEECCEECSSEEEEEEEETTEESCCST
T ss_pred             EEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCCeeEccCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCC
Confidence            88899999999999987763211                                                         


Q ss_pred             --eEeccceEEEEEee-cCCccceeEEEeeccccce-eeeeeccceeeeecchhccccceeee-eeeeeeeecCCeEEEE
Q psy14542        169 --HMLSSGELIIHQVD-ESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKRLLSAAKMFE-KHRILNVKKDESVILP  243 (371)
Q Consensus       169 --~~~~~~~l~i~~~~-~~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~~~~p~~~~~-~~~~~~~~~g~~~~l~  243 (371)
                        ....++.|.|.++. ..| .|.|+|.+.|. .|. .....   .+.|.     .+|.+... ..... +..|+.+.|.
T Consensus       572 ~~~~~~~~~l~i~~v~~~~d-~G~Y~C~a~n~-~g~~~~~~~---~v~v~-----~~p~~~~~~~~~~~-~~~G~~v~L~  640 (816)
T 3dmk_A          572 KQKVFPNGTLIIENVERNSD-QATYTCVAKNQ-EGYSARGSL---EVQVM-----VLPRIIPFAFEEGP-AQVGQYLTLH  640 (816)
T ss_dssp             TEEECTTSEEEESSCCHHHH-CEEEEEEEEES-SSCEEEEEE---EEEEE-----CCCCCBCCCCCSSC-EESSCEEEEE
T ss_pred             ceEEecCCeEEEEecCcccc-CEEEEEEEEEC-CCceeeeeE---EEEEe-----cCCccccccccccc-cCCCCeEEEE
Confidence              11123457777776 578 99999999998 553 33333   56665     44444332 23333 8899999999


Q ss_pred             EEeecCCC-CceEEEeCCcccccCCceEE-----ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcccccc
Q psy14542        244 CSAQGNPL-PTIKWYKQDSPVEESDRIQR-----IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLS  317 (371)
Q Consensus       244 C~~~~~p~-~~v~W~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~  317 (371)
                      |.+.+.+. +.+.|+++|..+.....+..     ..+.|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.    
T Consensus       641 C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~----  716 (816)
T 3dmk_A          641 CSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPR----  716 (816)
T ss_dssp             EBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEE----
T ss_pred             EEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCc----
Confidence            99986655 48999999998866544432     235799999999999999999999999999999999998888    


Q ss_pred             cceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        318 SGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                           +.  ..|..              ..+.+|+.++|.|.+.|+|+|.|+|+
T Consensus       717 -----~~--~~~~~--------------~~v~~G~~v~l~C~~~g~P~p~i~W~  749 (816)
T 3dmk_A          717 -----WI--LEPTD--------------KAFAQGSDAKVECKADGFPKPQVTWK  749 (816)
T ss_dssp             -----EE--ECCCC--------------EEEETTCCEEEECEEEEESCCEEECC
T ss_pred             -----ee--eeccc--------------ceecCCCcEEEEEEEecCCCCeEEEE
Confidence                 54  22221              26789999999999999999999996

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=100.00  E-value=4e-40  Score=289.02  Aligned_cols=314  Identities=25%  Similarity=0.393  Sum_probs=231.6

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe-CCEEEeeC-------CeeEEEEccCCcCC------CeEEE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRN-------SDEVLVLDRVQRED------AGMYQ   75 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~-~~~~~~~~-------~~~~l~i~~~~~~d------~G~Y~   75 (371)
                      +|.+...|...+.+.+|+.++|.|.+ .+.|.+.+.|+| +|..+...       .+++|.|.+++.+|      +|.|+
T Consensus         3 ~P~f~~~p~~~~~~~~G~~v~l~C~~-~g~p~p~v~W~k~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~   81 (388)
T 2v5m_A            3 GPVFLKEPTNRIDFSNSTGAEIECKA-SGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYA   81 (388)
T ss_dssp             EEEEEECCCSEEEEETTTCEEEECEE-EEESCCEEEEEETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEEE
T ss_pred             CCchhhCCCceEEEEcCccEEEEEEC-CCCCCCEEEEEcCCCCccccCCCceEEcCCceEEecccChhhccccccCceEE
Confidence            67888888876778899999999965 567889999999 77765432       56689999999997      99999


Q ss_pred             EEEEcCCCCe-EEEEEEEEecceeeEec-CCceeeecCCcEEEEEEecCCCC--CceEEEeeCCEEeeeCCeeEEEEccc
Q psy14542         76 CHVSADDDSA-QMSAQVILGGELVEIAS-SNQVVVDVGHRIELHCRVSPKRL--SSAKAWLKDGLVLRRNSDEVLVLDRV  151 (371)
Q Consensus        76 C~~~~~~~~~-~~~~~l~v~~~~~~~~~-~~~~~~~~g~~v~l~C~~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~  151 (371)
                      |.+.|..|.. +..+.|.+. .++.+.. .....+.+|+.++|.|.+.+.+.  .+.+.|++++..+......       
T Consensus        82 C~a~n~~g~~~s~~~~v~v~-~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~-------  153 (388)
T 2v5m_A           82 CLARNQFGSIISRDVHVRAV-VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAE-------  153 (388)
T ss_dssp             EEEEETTEEEECCCEEEEEE-CCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSC-------
T ss_pred             EEEEccCCeEEecceEEEEc-cccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccC-------
Confidence            9999987753 345666666 3333333 33344589999999999987653  2789999998765432100       


Q ss_pred             CcCCCeeEEEEEeCCceeEeccceEEEEEeecCCcc-ceeEEEeeccccceeeeeeccceeeeecchhccccceee-eee
Q psy14542        152 QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRY-RSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF-EKH  229 (371)
Q Consensus       152 ~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~-g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~-~~~  229 (371)
                         .         ++++.+..++.|.|.+++.+| . |.|+|.+.+...+....+.....+.|..+.....|.+.. ...
T Consensus       154 ---~---------~~~~~~~~~~~L~i~~v~~~d-~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~  220 (388)
T 2v5m_A          154 ---Y---------DGKYLVLPSGELHIREVGPED-GYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQK  220 (388)
T ss_dssp             ---B---------TTTEEECTTSCEEESSCCGGG-GGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCC
T ss_pred             ---C---------CCcEEEccCCcEEEecCCccc-cCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCC
Confidence               0         234555556789999999999 8 999999998733433333222245555321111222211 112


Q ss_pred             eeeeeecCCeEEEEEEeecCCCCceEEEeCCccc------ccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542        230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPV------EESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ  303 (371)
Q Consensus       230 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  303 (371)
                      ... +..|+.+.|.|.+.|.|.+.+.|++++..+      ....++...++.|.|.++..+|+|.|+|.|.|..|.....
T Consensus       221 ~~~-v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~  299 (388)
T 2v5m_A          221 PLE-LMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVE  299 (388)
T ss_dssp             CEE-EETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             ceE-EeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCceeEE
Confidence            233 788999999999999999999999986533      2334555667899999999999999999999999999999


Q ss_pred             EEEEEecCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        304 LFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       304 ~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                      +.|.|..+|.         +.  ..|.              ...+.+|+.++|.|.+.|+|+|.|+|+
T Consensus       300 ~~l~V~~~p~---------~~--~~~~--------------~~~v~~g~~~~l~C~~~g~p~p~i~W~  342 (388)
T 2v5m_A          300 TVLTVTAPLS---------AK--IDPP--------------TQTVDFGRPAVFTCQYTGNPIKTVSWM  342 (388)
T ss_dssp             EEEEEEEEEE---------EE--EESS--------------EEEECTTSCEEEEEEEEEECCCEEEEE
T ss_pred             EEEEEeCCCc---------cc--cCCC--------------cEEecCCCCEEEEEEeccccCCeEEEE
Confidence            9999988777         44  2221              226889999999999999999999995

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=3.2e-39  Score=284.52  Aligned_cols=293  Identities=13%  Similarity=0.171  Sum_probs=203.1

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHVSADD   82 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~   82 (371)
                      ..+..+|.. +.+.+|+++.|.|.+ .+.|.+.+.|++++..+...        ...+|.|.+++.+|+|.|+|.|.|..
T Consensus        49 ~~~~~~~~~-v~V~~G~~v~L~C~v-~g~P~p~i~W~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~  126 (423)
T 3qs7_E           49 SGTVYEAAA-VEVDVSASITLQVLV-DAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEA  126 (423)
T ss_dssp             -------CE-EEECSSCCEEEEEEC-SCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--
T ss_pred             Ccceecccc-EEEecCCcEEEEEEE-EcCCCCeEEEEECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCC
Confidence            345556665 899999999999954 56888999999999876542        23579999999999999999999998


Q ss_pred             CCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEE
Q psy14542         83 DSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH  162 (371)
Q Consensus        83 ~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~  162 (371)
                      +.....+.|.|. .+|.+..........|+.+.|.|.+.|.|. +.++|++++..+......                  
T Consensus       127 g~~~~~~~l~V~-~~p~~~~~~p~~~~~~~~~~L~C~a~G~P~-P~i~W~k~~~~~~~~~~~------------------  186 (423)
T 3qs7_E          127 TNYTILFTVSIR-NTLLYTLRRPYFRKMENQDALVCISESVPE-PIVEWVLCDSQGESCKEE------------------  186 (423)
T ss_dssp             CEEEEEEEEEEC------CEEEEEEEECSSSSCEEEEEEESSC-CEEEEEEC----------------------------
T ss_pred             CcEEEEEEEEEe-cCccccccCCcEeccCCceEEEEEEeeecC-CeEEEEECCCCCcccccc------------------
Confidence            888888888888 444443222223356888899999999888 999999988754321100                  


Q ss_pred             EeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeee-eeccceeeeecchhccccceeeeeeeeeeeecCCeEE
Q psy14542        163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLL-SVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVI  241 (371)
Q Consensus       163 ~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~-~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~  241 (371)
                         ....+.....+    +...| +|.|+|.|.|. .|.... .+   .|.|.     .+|.+.  +.... +.+|+.+.
T Consensus       187 ---~~~~~~~~~~~----l~~~d-~G~Y~C~A~N~-~G~~~~~~~---~l~V~-----~~p~~~--~~~~~-v~~G~~v~  246 (423)
T 3qs7_E          187 ---SPAVVKKEEKV----LHELF-GTDIRCCARNE-LGRECTRLF---TIDLN-----QTPQTT--LPQLF-LKVGEPLW  246 (423)
T ss_dssp             ------CEEECCSE----ECCCC-SSCEEEEEECS-SCEEEEECE---EEESS-----SCCCSS--TTEEE-EETTSCEE
T ss_pred             ---ccccccccceE----Eeccc-CeEEEEEEEcC-CCCcceeeE---EEEEe-----cCCccC--CCceE-EeCCCeEE
Confidence               00000000111    15678 99999999998 665433 23   56665     333331  22344 88999999


Q ss_pred             EEEEeec-CCCCceEEEeCCcccccCCce----------EEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEec
Q psy14542        242 LPCSAQG-NPLPTIKWYKQDSPVEESDRI----------QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAH  310 (371)
Q Consensus       242 l~C~~~~-~p~~~v~W~~~~~~~~~~~~~----------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  310 (371)
                      |.|.+.| .|.+.+.|++++..+.....+          ....+.|.|.++..+|+|.|+|.|.|.   ...++.|.|.+
T Consensus       247 L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~  323 (423)
T 3qs7_E          247 IRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVE  323 (423)
T ss_dssp             EEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEES
T ss_pred             EEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEe
Confidence            9999998 677999999999987654322          223357999999999999999999998   77888899988


Q ss_pred             CcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        311 GKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       311 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                      +|.         +.  ..|...            ...+.+|+.+.|.|.+.|+|+|.|+|+
T Consensus       324 ~p~---------i~--~~~~~~------------~~~v~~G~~v~l~C~~~g~P~p~i~W~  361 (423)
T 3qs7_E          324 KGF---------IN--ATNSSE------------DYEIDQYEEFCFSVRFKAYPQIRCTWT  361 (423)
T ss_dssp             SCE---------EE--EC---C------------EECCCTTCCCCEEEEEEEESCCEEEEE
T ss_pred             CCc---------ce--EcCCCc------------cEEecCCCeEEEEEEEEEcCCCeEEEE
Confidence            887         54  222111            126789999999999999999999996

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=2e-39  Score=286.08  Aligned_cols=314  Identities=21%  Similarity=0.355  Sum_probs=230.7

Q ss_pred             EecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEc----cCCcCCCe
Q psy14542          6 QVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLD----RVQREDAG   72 (371)
Q Consensus         6 ~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~----~~~~~d~G   72 (371)
                      .+..+|.+...+.....+.+|+.++|.|.+ .+.|.+.+.|+|+|..+...         ..++|.|.    +++.+|+|
T Consensus        12 ~~~~~P~i~~~~~~~~~v~~G~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G   90 (404)
T 3p3y_A           12 ELTQPPTITKQSAKDHIVDPRDNILIECEA-KGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEG   90 (404)
T ss_dssp             -CCCCCCEEEECCTTCEECSSSCCCCCEEE-CCSSCCEEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCE
T ss_pred             hccCCCcccccCCccEEEcCCCCEEEEEEe-cCCCCCeEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCE
Confidence            345678888776555899999999999964 66788999999999977532         34566664    88899999


Q ss_pred             EEEEEEEcCCCCe-EEEEEEEEecceeeEecC-CceeeecCCcEEEEEEe-cCCCCCceEEEeeCCEEeeeCCeeEEEEc
Q psy14542         73 MYQCHVSADDDSA-QMSAQVILGGELVEIASS-NQVVVDVGHRIELHCRV-SPKRLSSAKAWLKDGLVLRRNSDEVLVLD  149 (371)
Q Consensus        73 ~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~-~~~~~~~g~~v~l~C~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~  149 (371)
                      .|+|.+.+..+.. +..+.|.|...+...... ....+.+|+.++|.|.+ .+.+. +.+.|++++.......       
T Consensus        91 ~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~-~~v~W~~~~~~~~~~~-------  162 (404)
T 3p3y_A           91 EYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPS-PVIFWMSSSMEPITQD-------  162 (404)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSC-CEEEEECTTSCBCCCC-------
T ss_pred             EEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCC-CeEEEeCCCccccCCC-------
Confidence            9999999987766 467888888433322222 22445899999999999 55565 8999999875433221       


Q ss_pred             ccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchh--ccccceeee
Q psy14542        150 RVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKR--LLSAAKMFE  227 (371)
Q Consensus       150 ~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~--~~~p~~~~~  227 (371)
                                      .+.....++.|.|.++...|+.|.|+|.+.+. .+..........+.+.....  ..+|.+...
T Consensus       163 ----------------~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~-~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~  225 (404)
T 3p3y_A          163 ----------------KRVSQGHNGDLYFSNVMLQDMQTDYSCNARFH-FTHTIQQKNPFTLKVLTTRGVAERTPSFMYP  225 (404)
T ss_dssp             ----------------SSEEECTTSCEEESSCCSGGGSSCBEEEEECT-TTCCEEECCCBCEEEECCSCCCCCCCCBSSS
T ss_pred             ----------------CcEEEcCCCcEEEEeeeeccCCcceEEEEEec-cccceeccCceeEEEeccCCccccCCccccc
Confidence                            13333345789999999999339999999987 44332222122444432110  122333221


Q ss_pred             ---eeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCce-EEecceEEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542        228 ---KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI-QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ  303 (371)
Q Consensus       228 ---~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  303 (371)
                         ..... +..|+.+.|.|.+.+.|.+.+.|++++..+...... ...++.|.|.++..+|+|.|+|.|.|..|.....
T Consensus       226 ~~~~~~~~-~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  304 (404)
T 3p3y_A          226 QGTASSQM-VLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHT  304 (404)
T ss_dssp             CSSEEEEE-EETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             cCCCCCce-EecCCCEEEEEEECCCCCCcEEEEECCEECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEE
Confidence               12333 889999999999999999999999999988765432 2345789999999999999999999999999999


Q ss_pred             EEEEEecCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        304 LFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       304 ~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                      +.|.|..+|.         +.  ..|.              ...+.+|+.++|.|.+.|+|+|.++|+
T Consensus       305 ~~l~V~~~p~---------~~--~~~~--------------~~~v~~g~~~~l~C~~~g~p~p~v~W~  347 (404)
T 3p3y_A          305 ISVRVKAAPY---------WL--DEPK--------------NLILAPGEDGRLVCRANGNPKPTVQWM  347 (404)
T ss_dssp             EEEEEEEEEE---------EE--ECCC--------------CEEECTTCCEEEECEEEEESCCEEEEE
T ss_pred             EEEEEeCCCe---------ee--ccCC--------------cceeecCCcEEEEEEccccCCCceEEE
Confidence            9999998887         54  2222              126789999999999999999999995

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=1.1e-39  Score=285.37  Aligned_cols=309  Identities=24%  Similarity=0.399  Sum_probs=218.1

Q ss_pred             ccceEEEeCCCcEEE---eccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccC-CcCCCeEEEEE
Q psy14542          9 SSLSIEMSPSGQVVV---DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRV-QREDAGMYQCH   77 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~---~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~-~~~d~G~Y~C~   77 (371)
                      .+|.+...|.. ..+   .+|+.+.|.|. ..+.|.+.|.|+|+|..+...       .+++|.|.++ +.+|+|.|+|.
T Consensus         4 ~~P~f~~~P~~-~~~~~~~eg~~v~L~C~-~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~g~l~i~~~~~~~D~G~Y~C~   81 (384)
T 3kld_A            4 SGPVFVQEPSH-VMFPLDSEEKKVKLSCE-VKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCI   81 (384)
T ss_dssp             EEEEEEECCCC-EEEETTCSCSEEEECCE-EEEESCCEEEEEETTEECCC----CEEEETTEEEEESCCHHHHCEEEEEE
T ss_pred             CCCEEEeCCcc-eEeecCCCCCeEEEEeE-ecCCCCCEEEEEECCEECcCCCCccEEEECCEEEEcCCCCcccCEEEEEE
Confidence            35677777877 555   58899999995 467888999999999987543       2346777665 78899999999


Q ss_pred             EEcCCCCe-EEEEEEEEecceeeEec--CCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcC
Q psy14542         78 VSADDDSA-QMSAQVILGGELVEIAS--SNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE  154 (371)
Q Consensus        78 ~~~~~~~~-~~~~~l~v~~~~~~~~~--~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  154 (371)
                      |.|..|.. .....|.+. ..+.+..  .....+.+|+.+.|.|......+.+.+.|++++..+.....           
T Consensus        82 A~N~~G~~~s~~~~l~v~-~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~-----------  149 (384)
T 3kld_A           82 ATNSFGTIVSREAKLQFA-YLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNR-----------  149 (384)
T ss_dssp             EEETTEEEECCCEEEEEE-EECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSS-----------
T ss_pred             EEcCcccEEecceEEEEe-cccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeecc-----------
Confidence            99987754 223445544 2222222  22344588999999997654333379999999987653321           


Q ss_pred             CCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecc--hhccccceeee-eeee
Q psy14542        155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTEN--KRLLSAAKMFE-KHRI  231 (371)
Q Consensus       155 ~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~--~~~~~p~~~~~-~~~~  231 (371)
                                  ++....++.|.|.++..+| +|.|+|.+.|. .+..........+.+...  .....|.+... +...
T Consensus       150 ------------~~~~~~~~~L~I~~v~~~D-~G~Y~C~a~n~-~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~  215 (384)
T 3kld_A          150 ------------RFVSQETGNLYIAKVEKSD-VGNYTCVVTNT-VTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETV  215 (384)
T ss_dssp             ------------EEECTTTCCEEESSCCGGG-CEEEEEEEEET-TTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEE
T ss_pred             ------------EEEEcCCCcEEEeecCHHH-CceEEEEEecc-cccceeeCCceEEEEccCCcccccCCceeecCCCce
Confidence                        1112233679999999999 99999999997 443222111112222210  00123333332 3334


Q ss_pred             eeeecCCeEEEEEEeecCCCCceEEEeCCc-ccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEec
Q psy14542        232 LNVKKDESVILPCSAQGNPLPTIKWYKQDS-PVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAH  310 (371)
Q Consensus       232 ~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  310 (371)
                      . +..|+.+.|.|.+.|.|.|.+.|++++. .+....+....++.|.|.++..+|+|.|+|.|.|..|.......|.|..
T Consensus       216 ~-~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~  294 (384)
T 3kld_A          216 P-AEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA  294 (384)
T ss_dssp             E-EETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             E-ecCCCcEEEEEEEeecCCCcEEEEeCCCccccccceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEec
Confidence            4 8899999999999999999999999544 5544333334467899999999999999999999999999999999988


Q ss_pred             CcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        311 GKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       311 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                      +|.         +.  ..+.              ...+.+|+.+.|.|.+.|.|+|.|+|+
T Consensus       295 ~P~---------~~--~~~~--------------~~~v~~g~~v~l~C~~~g~P~p~i~W~  330 (384)
T 3kld_A          295 QPN---------WV--QIIN--------------DIHVAMEESVFWECKANGRPKPTYRWL  330 (384)
T ss_dssp             EEE---------EE--ECCC--------------CEEECTTCCEEEECEEEEESCCEEEEE
T ss_pred             CCc---------cc--cCCC--------------ceEecCCCCEEEEeECCccCCCeEEEE
Confidence            887         54  1111              126789999999999999999999996

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=1.3e-38  Score=287.78  Aligned_cols=308  Identities=13%  Similarity=0.112  Sum_probs=212.2

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHVSADDDS   84 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   84 (371)
                      +.+++. ++.+.+|++++|.|. ..+.+..++.|++++..+...        ...+|.|.+++.+|+|.|+|.+.+..+.
T Consensus        51 ~~~~~~-~~~v~~g~~~~L~c~-~~~~~~~~~~W~~~~~~l~~~~~~~~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~  128 (527)
T 3qs9_E           51 TVYEAA-AVEVDVSASITLQVL-VDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATN  128 (527)
T ss_dssp             -----C-EEEECSSCCEEEEEE-CSCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CE
T ss_pred             ceeeee-eEEEeccccEEEEEE-EecCCceeEEEEecCCccCcccccCCCcceEEEEEECcCChhhCeeEEEEEEecccc
Confidence            444555 489999999999994 556777899999998876543        3346999999999999999999988776


Q ss_pred             eEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCC-----eeEEEEcccCcCCCeeE
Q psy14542         85 AQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS-----DEVLVLDRVQREDAGMY  159 (371)
Q Consensus        85 ~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~-----~~~~~~~~~~~~~~g~y  159 (371)
                      ....+.|.|.. .+............|+.+.|.|.+.|.|. +.++|++++..+....     ........++..|.|.|
T Consensus       129 ~~~~~~v~v~~-~~~~~~~~p~~~~~~~~~~L~C~a~G~P~-P~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~G~Y  206 (527)
T 3qs9_E          129 YTILFTVSIRN-TLLYTLRRPYFRKMENQDALVCISESVPE-PIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDI  206 (527)
T ss_dssp             EEEEEEEEEC------CEEEEEEEECSSSSCEEEEEEESSC-CEEEEEEC-------------CEEECCSEECCCCSSCE
T ss_pred             EEEEEEEEECC-ceeeccCCCcEEecCCceEEEEEEceecC-CeEEEEECCCCCccccccCCcEEEEeeeeccccCCEEE
Confidence            66666666651 11111111112256788899999999988 9999999876553211     11112223446778888


Q ss_pred             EEEEeCCce---------------------------------------------e------------------------E
Q psy14542        160 QCHIEDGKY---------------------------------------------H------------------------M  170 (371)
Q Consensus       160 ~~~~~~~~~---------------------------------------------~------------------------~  170 (371)
                      +|.+.|...                                             .                        .
T Consensus       207 ~C~A~N~~G~~~~~~~~l~V~~~p~~~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~  286 (527)
T 3qs9_E          207 RCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTM  286 (527)
T ss_dssp             EEEEECSSCEEEEECEEEESSSCCCCSCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEE
T ss_pred             EEEEEeCCCcccceEEEEEEeccCccCCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcce
Confidence            865552100                                             0                        0


Q ss_pred             eccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeee--eeeeeeecCCeEEEEEEeec
Q psy14542        171 LSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEK--HRILNVKKDESVILPCSAQG  248 (371)
Q Consensus       171 ~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~--~~~~~~~~g~~~~l~C~~~~  248 (371)
                      .....|.|.+++.+| +|.|+|.+.|.    .....   .|.|.     .+|.+...+  .... +..|+.+.|.|.+.|
T Consensus       287 ~~~~~L~I~~v~~~D-sG~Y~C~a~N~----~~~~~---~L~V~-----~~p~i~~~~~~~~~~-v~~G~~v~L~C~~~g  352 (527)
T 3qs9_E          287 IRILFAFVSSVARND-TGYYTCSSSKH----PSQSA---LVTIV-----EKGFINATNSSEDYE-IDQYEEFCFSVRFKA  352 (527)
T ss_dssp             EEEEEEEESSCCGGG-CEEEEEEETTE----EEEEE---EEEEC-------CEEECCCSCCEEC-CCTTCCCCEEEEEEE
T ss_pred             eeEEEEEEccCCccc-CeEEEEEEEeC----CCceE---EEEEE-----ccCccccccCcccEE-EcCCCeEEEEEEEEe
Confidence            011238889999999 99999999986    33344   67776     444443322  2334 888999999999999


Q ss_pred             CCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcccccccceEEEEeeee
Q psy14542        249 NPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDE  328 (371)
Q Consensus       249 ~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~  328 (371)
                      .|.|.+.|+++|..+....+....+..|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.         +.  ..
T Consensus       353 ~P~p~i~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~---------i~--~~  421 (527)
T 3qs9_E          353 YPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQ---------VL--AE  421 (527)
T ss_dssp             ESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCE---------EE--EC
T ss_pred             cCCCEEEEEECCEECcCCcccccCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCe---------EE--Ee
Confidence            99999999999998876655444567899999999999999999999999999999999999998         55  11


Q ss_pred             ccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        329 KNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                                          ..|  ..|.|.+.|+|+|.|+|+
T Consensus       422 --------------------~~~--~~l~C~a~g~P~p~i~W~  442 (527)
T 3qs9_E          422 --------------------ASA--SQASCFSDGYPLPSWTWK  442 (527)
T ss_dssp             --------------------CCC--E---EEEECSSCCEEEEE
T ss_pred             --------------------CCC--CEEEEEEEEEcCCeEEEE
Confidence                                112  257999999999999995

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=1.6e-37  Score=289.82  Aligned_cols=322  Identities=19%  Similarity=0.339  Sum_probs=242.3

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCeE--EEE
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQ--MSA   89 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~   89 (371)
                      .+.+.|.. ..+.+|+.++|.|.+ .+.|.+.+.|+++|..+.  ....|.|.+++.+|+|.|+|.+.|..+...  ..+
T Consensus       205 ~~~~~~~~-~~~~~G~~~~l~C~~-~g~p~~~i~W~~~g~~i~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~  280 (642)
T 1e07_A          205 APTISPLN-TSYRSGENLNLSCHA-ASNPPAQYSWFVNGTFQQ--STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVT  280 (642)
T ss_pred             CcEEecCC-cccccCCEEEEEEEc-CCCCCcEEEEEECCeEcc--cCCceEEecccccCCeEEEEEEEeCCCceEEeeeE
Confidence            34556665 678999999999965 778889999999999886  567899999999999999999999877653  345


Q ss_pred             EEEEecc--eeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCC-------eeEEEEcccCcCCCeeEE
Q psy14542         90 QVILGGE--LVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS-------DEVLVLDRVQREDAGMYQ  160 (371)
Q Consensus        90 ~l~v~~~--~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~-------~~~~~~~~~~~~~~g~y~  160 (371)
                      .|.|...  ++.+.......+..|+.+.|.|.+.+.+  +.+.|++++..+....       ...|.+.++..+|.|.|+
T Consensus       281 ~v~v~~~~~~p~i~~~~~~~~~~g~~v~l~C~~~~~p--~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  358 (642)
T 1e07_A          281 TITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQN--TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYE  358 (642)
T ss_pred             EEEEEccCCCCEEEcCCceeEecCCcEEEEEECCCCC--ccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEE
Confidence            6666532  2444443333446688899999998865  5999999998764432       346888999999999999


Q ss_pred             EEEeCCcee-------E-----------------------------------------------eccceEEEEEeecCCc
Q psy14542        161 CHIEDGKYH-------M-----------------------------------------------LSSGELIIHQVDESDR  186 (371)
Q Consensus       161 ~~~~~~~~~-------~-----------------------------------------------~~~~~l~i~~~~~~d~  186 (371)
                      |.+.+....       +                                               .....|.|.++..+| 
T Consensus       359 C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~~~~L~i~~~~~~d-  437 (642)
T 1e07_A          359 CGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFISNITEKN-  437 (642)
T ss_pred             EEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCCCceEEEccCChhh-
Confidence            887753210       0                                               011357788889999 


Q ss_pred             cceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccC
Q psy14542        187 YRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEES  266 (371)
Q Consensus       187 ~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~  266 (371)
                      .|.|+|.+.|. .|....+.   .+.|.......+|.+.. ..... +..|+.+.|.|.+. .|.+.+.|+++|..+...
T Consensus       438 ~G~Y~C~a~n~-~g~~~~s~---~~~v~v~~~~~~p~i~~-~~~~~-v~~g~~v~l~C~~~-~~~~~i~W~~~g~~l~~~  510 (642)
T 1e07_A          438 SGLYTCQANNS-ASGHSRTT---VKTITVSAELPKPSISS-NNSKP-VEDKDAVAFTCEPE-AQNTTYLWWVNGQSLPVS  510 (642)
T ss_pred             CeEEEEEEEcC-CCCCcccc---eEEEEEeccCCCceEec-CCcee-ecCCCeEEEEEECC-CCCcEEEEEECCEeCCCC
Confidence            99999999998 55444433   33333322223444443 22333 78999999999998 478899999999998887


Q ss_pred             CceEE--ecceEEEeccCCCCCeEEEEEEEcCCCCce-eEEEEEEecCcccccccceEEEEeeeeccccccccccccccc
Q psy14542        267 DRIQR--IGSSLSISHVEESDSGVWNCVANNSEGQDK-MQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH  343 (371)
Q Consensus       267 ~~~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (371)
                      .++..  .++.|.|.++..+|+|.|+|.|.|..|... ..+.|.|..+|.         .. ...|.             
T Consensus       511 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~---------~~-~~~~~-------------  567 (642)
T 1e07_A          511 PRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPD---------TP-IISPP-------------  567 (642)
T ss_pred             CcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCC---------cc-eecCC-------------
Confidence            77664  356899999999999999999999999854 468888887665         11 01111             


Q ss_pred             eeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        344 RILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       344 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                       ...+.+|+.+.|.|.+.|.|+|.++|+
T Consensus       568 -~~~v~~g~~~~l~C~~~g~p~p~v~W~  594 (642)
T 1e07_A          568 -DSSYLSGANLNLSCHSASNPSPQYSWR  594 (642)
T ss_pred             -ceeEEcCCcEEEEEEeccCCCCeEEEE
Confidence             127889999999999999999999996

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=2.2e-38  Score=288.70  Aligned_cols=307  Identities=14%  Similarity=0.252  Sum_probs=231.3

Q ss_pred             eeEEecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe-CCEEEeeC------CeeEEEEccCCcCCCe-EE
Q psy14542          3 LFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRN------SDEVLVLDRVQREDAG-MY   74 (371)
Q Consensus         3 ~~~~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~-~~~~~~~~------~~~~l~i~~~~~~d~G-~Y   74 (371)
                      +.|.|..++.+...+.. ..+.+|+.++|.|.+ .+.+.+.+.|++ +|..+...      ....|.|.+++.+|+| .|
T Consensus       107 ~~l~V~~p~~~~~~~~~-~~v~~G~~v~l~C~~-~~~~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~~Y  184 (524)
T 2ec8_A          107 IYVFVRDPAKLFLVDRS-LYGKEDNDTLVRCPL-TDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCL  184 (524)
T ss_dssp             EEEECCCSSCSBCCCCC-CCEETTSCEEECCCB-SCCCCSCEEEECSSSCCCCSSCEEEEETTTEEEEESCCGGGTTCEE
T ss_pred             EEEEECCCCcccccccc-eEEEcCCeEEEECcC-CCCccceEEEEccCCcCcCCCCceeECCCccEEEeccchhhCCceE
Confidence            45666655555566666 789999999999954 455568999988 77666432      4568999999999999 99


Q ss_pred             EEEEEcCCCCe-EEEEEEEEe---cceeeEecCCcee-eecCCcEEEEEEecCCCCCceEEEeeCCEEe--eeCCeeEEE
Q psy14542         75 QCHVSADDDSA-QMSAQVILG---GELVEIASSNQVV-VDVGHRIELHCRVSPKRLSSAKAWLKDGLVL--RRNSDEVLV  147 (371)
Q Consensus        75 ~C~~~~~~~~~-~~~~~l~v~---~~~~~~~~~~~~~-~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~--~~~~~~~~~  147 (371)
                      +|.+.+..+.. ...+.|.|.   ..+|.+...+... +.+|+.+.|.|.+.+.+.+..+.|++++..+  .....  ..
T Consensus       185 ~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~--~~  262 (524)
T 2ec8_A          185 HCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYN--SW  262 (524)
T ss_dssp             EEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEE--EE
T ss_pred             EEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccc--cc
Confidence            99999876654 336777775   2566666555444 4899999999999988773459999998763  22111  00


Q ss_pred             EcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeee
Q psy14542        148 LDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFE  227 (371)
Q Consensus       148 ~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~  227 (371)
                      +                .+.+.....+.|.|.++..+| +|.|+|.+.|. .|......   .|.|.     .+|.+...
T Consensus       263 ~----------------~~~~~~~~~~~L~I~~~~~~D-~G~Y~C~a~n~-~g~~~~~~---~l~V~-----~~p~~~~~  316 (524)
T 2ec8_A          263 H----------------HGDFNYERQATLTISSARVND-SGVFMCYANNT-FGSANVTT---TLEVV-----DKGFINIF  316 (524)
T ss_dssp             E----------------CSSSCEEEEEEEEESSCCTTT-CEEEEEEEECS-SCEEEEEE---EEEEE-----SSCEEEEE
T ss_pred             c----------------ccCCccceEEEEEECCCCHHH-CEEEEEEEEec-CCceEEEE---EEEEe-----ccCceEee
Confidence            0                011112233689999999999 99999999998 77766666   88888     66666655


Q ss_pred             ee---eeeeeecCCeEEEEEEeecCCCCc-eEEEeCCcccccCC-ceEE--------ecceEEEeccCCCCCeEEEEEEE
Q psy14542        228 KH---RILNVKKDESVILPCSAQGNPLPT-IKWYKQDSPVEESD-RIQR--------IGSSLSISHVEESDSGVWNCVAN  294 (371)
Q Consensus       228 ~~---~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~~~~~~-~~~~--------~~~~l~i~~~~~~d~G~Y~C~a~  294 (371)
                      +.   ... +..|+.+.|.|.+.|.|.+. +.|++++..+.... ++..        ..+.|.|.++..+|+|.|+|.|.
T Consensus       317 ~~~~~~~~-v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  395 (524)
T 2ec8_A          317 PMINTTVF-VNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVS  395 (524)
T ss_dssp             ESSCSEEE-ECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cCCCceEE-EcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEE
Confidence            43   344 89999999999999999999 99999999887664 3321        23579999999999999999999


Q ss_pred             cCCCCceeEEEEEEecCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        295 NSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       295 n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                      |..|....++.|.|..+|.         +....                   ...+|   +|.|.+.|+|+|.|+|+
T Consensus       396 N~~g~~~~~~~l~V~~~P~---------i~~~~-------------------~~~~g---~l~C~~~g~P~p~i~W~  441 (524)
T 2ec8_A          396 NSDVNAAIAFNVYVNTKPE---------ILTYD-------------------RLVNG---MLQCVAAGFPEPTIDWY  441 (524)
T ss_dssp             CSSCEEEEEEEEEECEEEE---------EEEEE-------------------CCSSS---CEEEEEEEESCCEEECC
T ss_pred             ecCceEEEEEEEEEecCCe---------Eeecc-------------------cCcCc---EEEEEEEeecCCEEEEE
Confidence            9999999999999998888         55111                   12255   89999999999999996

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=7.1e-39  Score=281.74  Aligned_cols=317  Identities=19%  Similarity=0.290  Sum_probs=223.0

Q ss_pred             EecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEE
Q psy14542          6 QVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCH   77 (371)
Q Consensus         6 ~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~   77 (371)
                      .|..+|.+...|.. +.+.+|+.++|.|.+..+.|.+.+.|+|+|..+...        .+++|.|.+++.+|+|.|+|.
T Consensus         2 ~v~~~P~~~~~p~~-~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (395)
T 1bih_A            2 PVDKYPVLKDQPAE-VLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCF   80 (395)
T ss_dssp             ---CCCEECCCCSE-EEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEE
T ss_pred             CcCCCCEeecCCCc-eEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEE
Confidence            46678889998887 899999999999966554788999999998876543        457899999999999999999


Q ss_pred             EEcCCCCeE-EEEEEEEec-ceeeEecCCceeeecCCcEEEEEEe-cCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcC
Q psy14542         78 VSADDDSAQ-MSAQVILGG-ELVEIASSNQVVVDVGHRIELHCRV-SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE  154 (371)
Q Consensus        78 ~~~~~~~~~-~~~~l~v~~-~~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  154 (371)
                      +.+..|... ..+.|.|.. ..+.+. .....+.+|+.+.|.|.+ .+.+. +.+.|++++........           
T Consensus        81 a~n~~g~~~s~~~~l~v~~~~~p~~~-~~~~~~~~G~~v~l~C~~~~~~p~-~~v~W~~~~~~~~~~~~-----------  147 (395)
T 1bih_A           81 AETPAGVASSRVISFRKTYLIASPAK-THEKTPIEGRPFQLDCVLPNAYPK-PLITWKKRLSGADPNAD-----------  147 (395)
T ss_dssp             EEETTEEEECCCEEEEEEEEECCCCE-EEEECCBTTEEEEECCCCCEEESC-CEEEEEEEETTSCGGGC-----------
T ss_pred             EEeCCCeEEeEEEEEEEEEeecCCcC-CcceeeeeCCcEEEEecCCCCCCC-CeEEEEecCCCcCcccc-----------
Confidence            998766543 224444431 122221 122333799999999997 56666 89999997611100000           


Q ss_pred             CCeeEEEEEeCCceeEeccceEEEEEeecCCccc---eeEEEeeccccceeeeeeccceeeeecch-----hccccceee
Q psy14542        155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYR---SYQCRGVNKLTGASLLSVNRGRLSLTENK-----RLLSAAKMF  226 (371)
Q Consensus       155 ~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g---~y~C~~~~~~~~~~~~~~~~~~l~v~~~~-----~~~~p~~~~  226 (371)
                      . .     ..+.++....++.|.|.+++..| .|   .|+|.+.+. .+..........+.+....     ...+|.+  
T Consensus       148 ~-~-----~~~~~~~~~~~~~L~i~~v~~~d-~G~~~~Y~C~a~n~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--  217 (395)
T 1bih_A          148 V-T-----DFDRRITAGPDGNLYFTIVTKED-VSDIYKYVCTAKNA-AVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--  217 (395)
T ss_dssp             C-C-----CCCTTEEECTTSCEEEEEECGGG-CCSSEEEEEEEECT-TCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--
T ss_pred             c-c-----cccccEEEcCCCcEEEEEEeecc-CCCceEEEEEEEec-ccceEEEeeeEEecccccccccccCCcCcee--
Confidence            0 0     00123444455789999999999 99   999999998 5543222200011111100     0012333  


Q ss_pred             eeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCC--ceEE----ecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        227 EKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD--RIQR----IGSSLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       227 ~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      .+.... +..|+.+.|.|.+.|.|.+.+.|++++..+....  ++..    .+..|.|.++..+|+|.|+|.|.|..|..
T Consensus       218 ~~~~~~-~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  296 (395)
T 1bih_A          218 VSKDMM-AKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKP  296 (395)
T ss_dssp             ECCSEE-EETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSC
T ss_pred             cCCceE-EECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCc
Confidence            233344 8999999999999999999999999998876542  2221    12379999999999999999999999997


Q ss_pred             ee-EEEEEEecCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        301 KM-QLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       301 ~~-~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                      .. .+.|.|..+|.         +.  ..|.. .            ..+.+|+.++|.|.+.|.|+|.++|+
T Consensus       297 ~~~~~~l~V~~~P~---------~~--~~~~~-~------------~~~~~g~~~~l~C~~~g~p~p~v~W~  344 (395)
T 1bih_A          297 QKHSLKLTVVSAPK---------YE--QKPEK-V------------IVVKQGQDVTIPCKVTGLPAPNVVWS  344 (395)
T ss_dssp             EEEEEEEEEEEEEE---------EE--ECCCS-E------------EEECTTSCEEEECEEEEESCCCCEEE
T ss_pred             eEEEEEEEEEcCCc---------cc--cCCCc-c------------eEecCCCeEEEEEEECcccCCeeEEE
Confidence            65 89999998888         55  22221 0            26789999999999999999999995

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=3.7e-38  Score=287.15  Aligned_cols=305  Identities=17%  Similarity=0.235  Sum_probs=227.9

Q ss_pred             eEEecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEE-eeCCeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542          4 FIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL-RRNSDEVLVLDRVQREDAGMYQCHVSADD   82 (371)
Q Consensus         4 ~~~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~   82 (371)
                      .+.|..+|.+...+.. ..+.+|++++|.|.+. +    .+.|+|++..+ ......+|.|.+++.+|+|.|+|.+.+  
T Consensus        30 ~l~v~~pP~i~~~~~~-~~v~~G~~v~l~C~~~-~----~v~W~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n--  101 (524)
T 2ec8_A           30 SPGEPSPPSIHPGKSD-LIVRVGDEIRLLCTDP-G----FVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKH--  101 (524)
T ss_dssp             ---CCCCCEEESCCSE-EECCTTSCEEEEEECT-T----EEEEEEESSSCCEEECSSEEEESSCCSTTCEEEEEEETT--
T ss_pred             EcCCCCCCccCCCCce-EEEeCCCeEEEEEeCC-c----eEEEcCCCccccccCccceEEEcccchhhCEEEEEeecC--
Confidence            4455667777776666 8899999999999654 2    89999988754 222668899999999999999999988  


Q ss_pred             CCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEee-CCEEeeeCCeeEEEEcccCcCCCeeEEE
Q psy14542         83 DSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRNSDEVLVLDRVQREDAGMYQC  161 (371)
Q Consensus        83 ~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~g~y~~  161 (371)
                      | ....+.|.|...+..+.......+.+|+.++|.|.+.+.+. +.+.|++ ++..+....                   
T Consensus       102 g-~~~~~~l~V~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~-~~v~W~~~~g~~l~~~~-------------------  160 (524)
T 2ec8_A          102 G-LSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEV-TNYSLKGCQGKPLPKDL-------------------  160 (524)
T ss_dssp             S-CEEEEEEECCCSSCSBCCCCCCCEETTSCEEECCCBSCCCC-SCEEEECSSSCCCCSSC-------------------
T ss_pred             C-cceEEEEEECCCCcccccccceEEEcCCeEEEECcCCCCcc-ceEEEEccCCcCcCCCC-------------------
Confidence            3 37778888874333333333444589999999999988664 8999988 676654432                   


Q ss_pred             EEeCCceeEeccceEEEEEeecCCccc-eeEEEeeccccceee-eeeccceeeeecchhccccceeeeeeeeeeeecCCe
Q psy14542        162 HIEDGKYHMLSSGELIIHQVDESDRYR-SYQCRGVNKLTGASL-LSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDES  239 (371)
Q Consensus       162 ~~~~~~~~~~~~~~l~i~~~~~~d~~g-~y~C~~~~~~~~~~~-~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~  239 (371)
                           ++....+..|.|.+++.+| .| .|+|.+.+. .+... ...   .|.|.... ..+|.+...+.... +..|+.
T Consensus       161 -----~~~~~~~~~L~i~~~~~~d-~G~~Y~C~a~n~-~~~~~s~~~---~l~V~~~~-~~~p~i~~~~~~~~-v~~G~~  228 (524)
T 2ec8_A          161 -----RFIPDPKAGIMIKSVKRAY-HRLCLHCSVDQE-GKSVLSEKF---ILKVRPAF-KAVPVVSVSKASYL-LREGEE  228 (524)
T ss_dssp             -----EEEEETTTEEEEESCCGGG-TTCEEEEEEC-----CCCCCCE---ECCEECCC-CSCCEEECSCSEEE-EETTSC
T ss_pred             -----ceeECCCccEEEeccchhh-CCceEEEEEEEC-CceEEEEEE---EEEEEeCC-CCCCcEEecCCcce-EEcCCc
Confidence                 3333344689999999999 99 999999987 44332 233   55554211 15677766666666 999999


Q ss_pred             EEEEEEeecCCCCc-eEEEeCCccc--ccCCce-------EEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542        240 VILPCSAQGNPLPT-IKWYKQDSPV--EESDRI-------QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA  309 (371)
Q Consensus       240 ~~l~C~~~~~p~~~-v~W~~~~~~~--~~~~~~-------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  309 (371)
                      +.|.|.+.+.|.+. +.|++++..+  ....+.       ....+.|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus       229 v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~  308 (524)
T 2ec8_A          229 FTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVV  308 (524)
T ss_dssp             EEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEe
Confidence            99999999998887 9999999873  332221       2335689999999999999999999999999889999999


Q ss_pred             cCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCc-cccC
Q psy14542        310 HGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT-IKYR  371 (371)
Q Consensus       310 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-i~W~  371 (371)
                      .+|.         +.  ..|..           +....+.+|+.+.|.|.+.|+|+|. ++|+
T Consensus       309 ~~p~---------~~--~~~~~-----------~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~  349 (524)
T 2ec8_A          309 DKGF---------IN--IFPMI-----------NTTVFVNDGENVDLIVEYEAFPKPEHQQWI  349 (524)
T ss_dssp             SSCE---------EE--EEESS-----------CSEEEECTTCCEEEEEEEEEESCCCEEEEE
T ss_pred             ccCc---------eE--eecCC-----------CceEEEcCCCcEEEEEEEeecCCCcEEEEE
Confidence            9888         55  22111           1123788999999999999999999 9996

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.5e-37  Score=263.48  Aligned_cols=272  Identities=21%  Similarity=0.318  Sum_probs=201.8

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCc-CCCeEEEE
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQR-EDAGMYQC   76 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~-~d~G~Y~C   76 (371)
                      ..+|.+...|.. ..+.+|+.++|.|.+ .+.|.+.+.|+++|..+...          ....|.|.+++. +|+|.|+|
T Consensus         4 ~~~P~~~~~p~~-~~v~~G~~v~l~C~~-~g~p~~~i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C   81 (304)
T 2yd9_A            4 EEPPRFIKEPKD-QIGVSGGVASFVCQA-TGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYEC   81 (304)
T ss_dssp             CCCCEEEECCCC-EEEETTSCEEEEEEE-ECSSCCEEEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEE
T ss_pred             ccCCeeeecCCc-eEecCCCeEEEEEEE-EEeCCCeEEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEE
Confidence            457888888888 899999999999965 56788899999998877543          237899999998 99999999


Q ss_pred             EEEcCCCCeEEEEEEEEecce------eeEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEc
Q psy14542         77 HVSADDDSAQMSAQVILGGEL------VEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLD  149 (371)
Q Consensus        77 ~~~~~~~~~~~~~~l~v~~~~------~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~  149 (371)
                      .+.+..+.....+.|.|...+      |.+...+.. .+..|+.+.|.|.+.+.+. +.+.|++++..+.....      
T Consensus        82 ~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~-~~v~W~k~~~~~~~~~~------  154 (304)
T 2yd9_A           82 VAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPD-PEITWFKDFLPVDPSAS------  154 (304)
T ss_dssp             EEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSC-CEEEEEETTEECCGGGG------
T ss_pred             EEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCC-CeEEEEECCEECcCCCC------
Confidence            999988887778888887331      455544443 4488999999999998877 89999999988765321      


Q ss_pred             ccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeee-eccceeeeecchhccccceeeee
Q psy14542        150 RVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLS-VNRGRLSLTENKRLLSAAKMFEK  228 (371)
Q Consensus       150 ~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~-~~~~~l~v~~~~~~~~p~~~~~~  228 (371)
                                     ..+.....++.|.|.++..+| .|.|+|.+.|. .|..... .   .+.|...  ..+|.+...+
T Consensus       155 ---------------~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~~~~~~---~l~v~~~--~~~P~~~~~~  212 (304)
T 2yd9_A          155 ---------------NGRIKQLRSGALQIESSEETD-QGKYECVATNS-AGVRYSSPA---NLYVRVQ--NVAPRFSILP  212 (304)
T ss_dssp             ---------------TTSEEECTTSCEEECSCCGGG-CEEEEEEEEET-TEEEECCCE---EEEEECC--CEEEEEEECC
T ss_pred             ---------------cceEEeCCCeEEEEccCCccc-CEEEEEEEEeC-CCCEEeccE---EEEEEee--ccCCcEEecC
Confidence                           112223344689999999999 99999999998 6544332 2   4444321  1456666666


Q ss_pred             eeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        229 HRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       229 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      .... +..|+.+.|.|.+.|.|.+.+.|++++..+....++......|.|.++  +|+|.|+|.|.|..|....++.|.|
T Consensus       213 ~~~~-v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V  289 (304)
T 2yd9_A          213 MSHE-IMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITV  289 (304)
T ss_dssp             CCBC-CCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSCCBSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC-
T ss_pred             CceE-EcCCCeEEEEEEEeeeCCCEEEEEECCEECCCcccccCCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEE
Confidence            6655 899999999999999999999999999988776554333334666555  6999999999999999999999999


Q ss_pred             ecCcc
Q psy14542        309 AHGKY  313 (371)
Q Consensus       309 ~~~p~  313 (371)
                      ..++.
T Consensus       290 ~~~~~  294 (304)
T 2yd9_A          290 KSLPK  294 (304)
T ss_dssp             -----
T ss_pred             ecCcc
Confidence            98877

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=2.3e-38  Score=277.20  Aligned_cols=307  Identities=23%  Similarity=0.374  Sum_probs=223.3

Q ss_pred             ccceEEEeCCCcEEE---eccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCc-CCCeEEEEE
Q psy14542          9 SSLSIEMSPSGQVVV---DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQR-EDAGMYQCH   77 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~---~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~-~d~G~Y~C~   77 (371)
                      .+|.|...|.. ..+   .+|+.++|.|.+ .+.|.+.+.|+|+|..+...       .+++|.|.++.. +|+|.|+|.
T Consensus         3 ~~P~~~~~p~~-~~~~~~~~g~~v~l~C~~-~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~   80 (382)
T 1cs6_A            3 YGPVFEEQPAH-TLFPEGSAEEKVTLTCRA-RANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCV   80 (382)
T ss_dssp             EEEEEEECCCC-EEEETTCSCCEEEECCEE-EEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEE
T ss_pred             CCCEEEECCCc-EEEecCCCCCcEEEEEEe-cCCCCCEEEEEECCEECCcCCCccEEeeCCeEEEecccccccCEEEEEE
Confidence            46888899988 555   789999999965 46678899999999987643       345799999997 999999999


Q ss_pred             EEcCCCCeE-EEEEEEEecceeeEec--CCceeeecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCc
Q psy14542         78 VSADDDSAQ-MSAQVILGGELVEIAS--SNQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQR  153 (371)
Q Consensus        78 ~~~~~~~~~-~~~~l~v~~~~~~~~~--~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~  153 (371)
                      +.+..|... ..+.|.|. ..+.+..  .....+.+|+.+.|.|.+... +. +.+.|++++..+.....          
T Consensus        81 a~n~~g~~~s~~~~l~v~-~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~-~~i~W~~~~~~~~~~~~----------  148 (382)
T 1cs6_A           81 ATNARGTVVSREASLRFG-FLQEFSAEERDPVKITEGWGVMFTCSPPPHYPA-LSYRWLLNEFPNFIPAD----------  148 (382)
T ss_dssp             EEETTEEEECCCEEEEEE-EECCCCSSCCCCEEEETTSCEEECCCCCSEESC-CEEEEEESSTTCBCCCC----------
T ss_pred             EEcCCcEEEecceEEEee-ccccccccCCCceEEecCCcEEEEeCCCCCCCC-cEEEEEECCCccccccC----------
Confidence            998776542 23555555 2222222  233445899999999997543 44 89999998865432110          


Q ss_pred             CCCeeEEEEEeCCcee-EeccceEEEEEeecCCccceeEEEeeccccceeeeee--ccceeeeecc-hhccccceeee-e
Q psy14542        154 EDAGMYQCHIEDGKYH-MLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSV--NRGRLSLTEN-KRLLSAAKMFE-K  228 (371)
Q Consensus       154 ~~~g~y~~~~~~~~~~-~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~--~~~~l~v~~~-~~~~~p~~~~~-~  228 (371)
                                  ++.. ...++.|.|.+++.+| .|.|+|.+.+. .+......  ....+.+... ....+|.+... +
T Consensus       149 ------------~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~~~n~-~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~  214 (382)
T 1cs6_A          149 ------------GRRFVSQTTGNLYIAKTEASD-LGNYSCFATSH-IDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFP  214 (382)
T ss_dssp             ------------SSEEECTTTCCEEESSCCGGG-CEEEEEEEEEE-ETTEEEEEECCCEEEEEESCCCCCEEEEEEECCC
T ss_pred             ------------ceEEEecCceEEEEEeeCccc-CeeEEEEEEEc-cccccceeEccceeeccchhhcccCCCceeccCC
Confidence                        1111 1123679999999999 99999999987 43221111  1113333311 01134555443 3


Q ss_pred             eeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        229 HRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       229 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      .... +..|+.+.|.|.+.+.|.+.+.|++++..+..  +....+..|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus       215 ~~~~-~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~--~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  291 (382)
T 1cs6_A          215 ADTY-ALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS--KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII  291 (382)
T ss_dssp             SEEE-EETTCCEEEECEEEEESCCEEEEEECCSCCSC--CCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CceE-EeCCCeEEEEEEEccCCCCEEEEEECCccccc--EEecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            3444 89999999999999999999999999887653  23345678999999999999999999999999999999999


Q ss_pred             ecCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        309 AHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       309 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                      ..+|.         +.  ..+.              ...+.+|+.++|.|.+.|.|+|.++|+
T Consensus       292 ~~~p~---------~~--~~~~--------------~~~~~~g~~~~l~C~~~g~p~p~v~W~  329 (382)
T 1cs6_A          292 HAQPD---------WL--DVIT--------------DTEADIGSDLRWSCVASGKPRPAVRWL  329 (382)
T ss_dssp             EEEEE---------EE--ECCC--------------CEEEETTCCEEEECEEEEESCCEEEEE
T ss_pred             ecCCC---------cc--cCCC--------------ccEEcCCCeEEEEEEeeeecCCEEEEE
Confidence            98887         44  1111              126789999999999999999999995

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=100.00  E-value=4.7e-37  Score=258.76  Aligned_cols=266  Identities=22%  Similarity=0.417  Sum_probs=206.5

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe-CCEEEeeC-----------CeeEEEEccCCcCCCeEEEEE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRN-----------SDEVLVLDRVQREDAGMYQCH   77 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~-~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~   77 (371)
                      ++.+.+.|.. ..+.+|++++|.|.+....+.+.+.|++ +|..+...           ...+|.|.+++.+|+|.|+|.
T Consensus         2 ~~~v~~~p~~-~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (291)
T 1qz1_A            2 VLQVDIVPSQ-GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCV   80 (291)
T ss_dssp             CCCEEEESSS-EEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CcceEecCCC-ceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEE
Confidence            5778899998 8999999999999765544478999999 77655422           456899999999999999999


Q ss_pred             EEcCCCC-eEEEEEEEEecceeeEecCC-ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCC
Q psy14542         78 VSADDDS-AQMSAQVILGGELVEIASSN-QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRED  155 (371)
Q Consensus        78 ~~~~~~~-~~~~~~l~v~~~~~~~~~~~-~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~  155 (371)
                      +.+..+. ....+.|.|. .++.+...+ ...+.+|+.+.|.|.+.+.+. +.+.|++++..+....             
T Consensus        81 ~~n~~g~~~~~~~~l~v~-~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~-~~v~W~~~~~~~~~~~-------------  145 (291)
T 1qz1_A           81 VTAEDGTQSEATVNVKIF-QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLP-PTIIWKHKGRDVILKK-------------  145 (291)
T ss_dssp             EECTTSCEEEEEEEEEEE-CCSEEEECCSSEEEETTSCEEECCEEECSSC-CEEEEEETTSCSSTTC-------------
T ss_pred             EEcCCCCeeEEEEEEEee-ccccccCCCCcccccCCCeEEEEEEeccCCC-CEEEEEECCEEcccCC-------------
Confidence            9988754 4577888888 455555444 344589999999999998877 8999999987665432             


Q ss_pred             CeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecccccee-eeeeccceeeeecchhccccceeeee--eeee
Q psy14542        156 AGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS-LLSVNRGRLSLTENKRLLSAAKMFEK--HRIL  232 (371)
Q Consensus       156 ~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~~~~~~~~p~~~~~~--~~~~  232 (371)
                               +.++....+..|.|.++..+| .|.|+|.+.+...+.. ....   .+.|.     .+|.+....  ....
T Consensus       146 ---------~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~~~~~~~~~~~---~l~v~-----~~p~~~~~~~~~~~~  207 (291)
T 1qz1_A          146 ---------DVRFIVLSNNYLQIRGIKKTD-EGTYRCEGRILARGEINFKDI---QVIVN-----VPPTVQARQSIVNAT  207 (291)
T ss_dssp             ---------CTTEEECTTSCEEETTCCGGG-CEEEEEEEEEGGGTEEEEEEE---EEEEE-----EEEEEEESCSEEEEE
T ss_pred             ---------CceEEEccCCcEEEccCcccc-CeEEEEEEEecCCCceeeEEE---EEEEe-----cCCcccccccccccc
Confidence                     123333445689999999999 9999999998733332 2233   55565     555555432  2334


Q ss_pred             eeecCCeEEEEEEeecCCCCceEEEeCCcccccCC----ceEE--ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542        233 NVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD----RIQR--IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI  306 (371)
Q Consensus       233 ~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~----~~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  306 (371)
                       +..|+.+.|.|.+.|.|.|.+.|++++..+....    ++..  .++.|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus       208 -~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  286 (291)
T 1qz1_A          208 -ANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL  286 (291)
T ss_dssp             -TTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             -cccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEE
Confidence             8899999999999999999999999999887664    3332  24579999999999999999999999999999999


Q ss_pred             EEec
Q psy14542        307 QYAH  310 (371)
Q Consensus       307 ~v~~  310 (371)
                      .|.+
T Consensus       287 ~V~~  290 (291)
T 1qz1_A          287 KVFA  290 (291)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            8865

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=1.9e-36  Score=282.59  Aligned_cols=293  Identities=17%  Similarity=0.262  Sum_probs=219.1

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAGMYQCHVSADD   82 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~~~   82 (371)
                      +|.+...+ . ..+.+|+.+.|.|.+. + |.+.+.|+++|..+...       ....|.|.+++.+|+|.|+|.+.+..
T Consensus       112 ~p~i~~~~-~-~~v~~g~~v~l~C~~~-~-p~~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  187 (642)
T 1e07_A          112 KPSISSNN-S-KPVEDKDAVAFTCEPE-T-QDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPV  187 (642)
T ss_pred             CCcEEccC-c-eeEecCCcEEEEEECC-C-CCeeEEEEECCeECCCCCceEEcCCCCEEEEeCCCcccCeeEEEEEecCC
Confidence            45555433 2 5688999999999654 4 78899999999887643       45689999999999999999999877


Q ss_pred             CCe-EEEEEEEEecceeeEecCC-ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEE
Q psy14542         83 DSA-QMSAQVILGGELVEIASSN-QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQ  160 (371)
Q Consensus        83 ~~~-~~~~~l~v~~~~~~~~~~~-~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~  160 (371)
                      +.. +..+.|.|...+..+...+ ...+.+|+.+.|.|.+.+.|. +.+.|+++|..+...                   
T Consensus       188 ~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~G~~~~l~C~~~g~p~-~~i~W~~~g~~i~~~-------------------  247 (642)
T 1e07_A          188 SARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPP-AQYSWFVNGTFQQST-------------------  247 (642)
T ss_pred             CCcccceEEEEEEeCCCCcEEecCCcccccCCEEEEEEEcCCCCC-cEEEEEECCeEcccC-------------------
Confidence            654 4567777773333322222 334589999999999988777 899999998876322                   


Q ss_pred             EEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeE
Q psy14542        161 CHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESV  240 (371)
Q Consensus       161 ~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~  240 (371)
                                   ..|.|.++..+| .|.|+|.+.|. .+....+. ...+.|...  ..+|.+... . ...+..|+.+
T Consensus       248 -------------~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~~~s~-~~~v~v~~~--~~~p~i~~~-~-~~~~~~g~~v  307 (642)
T 1e07_A          248 -------------QELFIPNITVNN-SGSYTCQAHNS-DTGLNRTT-VTTITVYAE--PPKPFITSN-N-SNPVEDEDAV  307 (642)
T ss_pred             -------------CceEEecccccC-CeEEEEEEEeC-CCceEEee-eEEEEEEcc--CCCCEEEcC-C-ceeEecCCcE
Confidence                         568999999999 99999999998 55443332 114444421  123333322 2 2226668889


Q ss_pred             EEEEEeecCCCCceEEEeCCcccccCCceEE--ecceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEEecCcccccc
Q psy14542        241 ILPCSAQGNPLPTIKWYKQDSPVEESDRIQR--IGSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQYAHGKYHMLS  317 (371)
Q Consensus       241 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~p~~~~~  317 (371)
                      .|.|.+.+.| +.+.|+++|..+..+.++..  .++.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..+|.    
T Consensus       308 ~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~----  382 (642)
T 1e07_A          308 ALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPD----  382 (642)
T ss_pred             EEEEECCCCC-ccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCC----
Confidence            9999999876 69999999998877766653  45789999999999999999999999874 4568888887776    


Q ss_pred             cceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        318 SGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                           ...+ .|.              ...+.+|+.++|.|.+.|.|+|.++|+
T Consensus       383 -----~~~~-~~~--------------~~~~~~g~~~~l~C~~~g~p~~~i~W~  416 (642)
T 1e07_A          383 -----DPTI-SPS--------------YTYYRPGVNLSLSCHAASNPPAQYSWL  416 (642)
T ss_pred             -----CCee-cCC--------------ceEecCCCcEEEEEEcCccCCCeEEEE
Confidence                 2111 111              126779999999999999999999996

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=100.00  E-value=1e-36  Score=256.68  Aligned_cols=268  Identities=22%  Similarity=0.422  Sum_probs=202.6

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe-CCEEEeeC---------CeeEEEEccCCcCCCeEEEEEE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRN---------SDEVLVLDRVQREDAGMYQCHV   78 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~-~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~   78 (371)
                      .+|.+.+.|.. ..+.+|+.++|.|.+. +.|. .+.|++ ++..+...         ...+|.|.+++.+|+|.|+|.+
T Consensus         3 ~~p~v~~~~~~-~~v~~G~~v~l~C~~~-~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~   79 (291)
T 2wim_A            3 ALLQVTISLSK-VELSVGESKFFTCTAI-GEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQA   79 (291)
T ss_dssp             CCCEEEESCSE-EEEETTCCEEEEEEEE-SCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCceEEEeccc-eEecCCCcEEEEEEEe-CCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEE
Confidence            46788888888 8999999999999654 4453 899999 66554332         3468999999999999999999


Q ss_pred             EcCCCCe-EEEEEEEEecceeeEecCC-ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCC
Q psy14542         79 SADDDSA-QMSAQVILGGELVEIASSN-QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDA  156 (371)
Q Consensus        79 ~~~~~~~-~~~~~l~v~~~~~~~~~~~-~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~  156 (371)
                      .+..+.. ...+.|.|. .++.+...+ ...+.+|+.+.|.|.+.+.+. +.+.|++++..+....              
T Consensus        80 ~n~~g~~~~~~~~l~v~-~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~-~~v~W~~~~~~~~~~~--------------  143 (291)
T 2wim_A           80 TDAKGQTQEATVVLEIY-QKLTFREVVSPQEFKQGEDAEVVCRVSSSPA-PAVSWLYHNEEVTTIS--------------  143 (291)
T ss_dssp             ECSSSCEEEEEEEEEEE-CCCBCCSCCCSEEEETTSCEEECCCCBCSSC-CEEEEECC----CBCC--------------
T ss_pred             ecccCceEEEEEEEEec-CCcceEeCCCChhhcCCCCEEEEEEEccCCC-CEEEEEECCccccccC--------------
Confidence            9987766 467788887 444444333 344589999999999998877 8999999988765432              


Q ss_pred             eeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecccccee-eeeeccceeeeecchhccccceeeeee--eeee
Q psy14542        157 GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS-LLSVNRGRLSLTENKRLLSAAKMFEKH--RILN  233 (371)
Q Consensus       157 g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~~~~~~~~p~~~~~~~--~~~~  233 (371)
                              ..++....+..|.|.++...| .|.|+|.+.+...+.. ....   .+.+.     .+|.+.....  ... 
T Consensus       144 --------~~~~~~~~~~~L~i~~v~~~d-~G~Y~C~~~n~~~~~~~~~~~---~~~v~-----~~p~~~~~~~~~~~~-  205 (291)
T 2wim_A          144 --------DNRFAMLANNNLQILNINKSD-EGIYRCEGRVEARGEIDFRDI---IVIVN-----VPPAISMPQKSFNAT-  205 (291)
T ss_dssp             --------CSSEEECTTSCEEETTCCGGG-CEEEEEEEEETTTTEEEEEEE---EEEEE-----BCCCCBCSCSEEECC-
T ss_pred             --------CceEEEccCCCEEEEecchhh-CEEEEEEEEECCCCeeEEeeE---EEEec-----cCCccccCcccccce-
Confidence                    124444445789999999999 9999999998732322 2222   45555     4555544332  233 


Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE--ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecC
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR--IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHG  311 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  311 (371)
                      +..|+.+.|.|.+.|.|.+.+.|+++|..+..+.++..  .++.|.|.++..+|+|.|+|.|.|..|....++.|.|..+
T Consensus       206 ~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~  285 (291)
T 2wim_A          206 AERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ  285 (291)
T ss_dssp             SSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTTEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC---
T ss_pred             ecCCCeEEEEEEeecCCCCeEEEEECCEECcCCccEEEcCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEe
Confidence            78899999999999999999999999999887776654  3468999999999999999999999999999999999987


Q ss_pred             cc
Q psy14542        312 KY  313 (371)
Q Consensus       312 p~  313 (371)
                      +.
T Consensus       286 ~~  287 (291)
T 2wim_A          286 HH  287 (291)
T ss_dssp             --
T ss_pred             cc
Confidence            76

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=1.7e-36  Score=267.28  Aligned_cols=273  Identities=23%  Similarity=0.371  Sum_probs=218.4

Q ss_pred             eeEEecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeE
Q psy14542          3 LFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGM   73 (371)
Q Consensus         3 ~~~~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~   73 (371)
                      +.+.+..++.+...+.. ..+.+|+++.|.|.+ .+.|.+.+.|++++..+...         ...+|.|.+++.+|+|.
T Consensus       114 ~~l~v~~p~~~~~~~~~-~~~~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  191 (403)
T 3laf_A          114 AKVMVAGPLRFLSQTES-ITAFMGDTVLLKCEV-IGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGV  191 (403)
T ss_dssp             EEEEECCCCEECSCCCC-EEEETTSCEEECCCE-ECSSCCEEEEEESSSBCCCCTTCCSEEECTTSCEEECSCCGGGCEE
T ss_pred             EEEEecCCCccccCCCc-EEEEcCCeEEEEEEE-cccCCCeEEEEECCEeccccCCceEEEEcCCceEEEcccccccCEE
Confidence            45666667777666666 899999999999954 56678899999998776422         45689999999999999


Q ss_pred             EEEEEEcCCCCe-EEEEEEEEecce-----eeEecCC-ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEE
Q psy14542         74 YQCHVSADDDSA-QMSAQVILGGEL-----VEIASSN-QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVL  146 (371)
Q Consensus        74 Y~C~~~~~~~~~-~~~~~l~v~~~~-----~~~~~~~-~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~  146 (371)
                      |+|.+.+..+.. ...+.|.|...+     +.+...+ ...+.+|+.++|.|.+.+.+. +.+.|++++..+....    
T Consensus       192 Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~~~~~~~~~~----  266 (403)
T 3laf_A          192 YRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPP-PSFTWLRGEEVIQLRS----  266 (403)
T ss_dssp             EEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESC-CEEEEEETTEECCCSS----
T ss_pred             EEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCC-CeEEEEECCeeccCCC----
Confidence            999999877653 344566665222     1222233 344589999999999998877 7999999998776542    


Q ss_pred             EEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceee
Q psy14542        147 VLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF  226 (371)
Q Consensus       147 ~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~  226 (371)
                                         .++....+..|.|.++..+| .|.|+|.+.|. .+......   .+.|.     .+|.+..
T Consensus       267 -------------------~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V~-----~~p~~~~  317 (403)
T 3laf_A          267 -------------------KKYSLLGGSNLLISNVTDDD-SGTYTCVVTYK-NENISASA---ELTVL-----VPPWFLN  317 (403)
T ss_dssp             -------------------SSEEEETTTEEEECSCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEE-----EEEEEEE
T ss_pred             -------------------ceEEECCccEEEEeCCCHHH-CEEEEEEEEcC-CCceEEEE---EEEEE-----CCCcEee
Confidence                               13333344789999999999 99999999998 77776666   88887     6777777


Q ss_pred             eeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEE
Q psy14542        227 EKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLF  305 (371)
Q Consensus       227 ~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  305 (371)
                      .+.... +..|+.+.|.|.+.|.|.+.+.|+++|..+....++. ..++.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus       318 ~~~~~~-~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~  396 (403)
T 3laf_A          318 HPSNLY-AYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQ  396 (403)
T ss_dssp             CCCCEE-CCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             cCcceE-EecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEecCccEEEeccccccCEEEEEEEEcCCceEEEEEE
Confidence            776666 8899999999999999999999999999887776665 34578999999999999999999999999999999


Q ss_pred             EEEecCc
Q psy14542        306 IQYAHGK  312 (371)
Q Consensus       306 l~v~~~p  312 (371)
                      |.|..||
T Consensus       397 l~V~~P~  403 (403)
T 3laf_A          397 LIVPKPA  403 (403)
T ss_dssp             EECCCC-
T ss_pred             EEEeCCC
Confidence            9998765

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=1.8e-36  Score=271.01  Aligned_cols=312  Identities=16%  Similarity=0.217  Sum_probs=219.7

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCee-----EEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCeEE
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAK-----AWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQM   87 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~-----~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   87 (371)
                      |.+.|+. ..+.+|++++|.|.+ .+ |.+.+     .|+|++..+.......|.|.+++. |+| |+|.+.+..+....
T Consensus         2 i~~~P~~-~~v~~G~~v~L~C~~-~g-p~p~~~~~~~~w~k~~~~~~~~~~~~l~i~~v~~-d~g-Y~C~a~~~~~~~~~   76 (450)
T 1z7z_I            2 TSVSPSK-VILPRGGSVLVTCST-SC-DQPMLLGIETPLPKKELLLPGNNRKVYELSNVQE-DSQ-PMCYSNCPDGQSTA   76 (450)
T ss_dssp             CEEESSE-EEEETTEEEEEEEEC-CS-SCCCEEEECSSSCEEECCSSTTTEEEEEEEEECS-CBC-CEEEEEETTEEEEE
T ss_pred             cccCCCc-eEEecCCcEEEEEEc-cC-CCcccccccceeeecceEecCCCceEEEEEeccc-CCe-eEEEEeCCCCccee
Confidence            5677877 899999999999965 44 67777     899987654433567899999987 999 99999876666677


Q ss_pred             EEEEEEecceeeEecCCc-eeeecCCcEEEEEEecCCCCCc--eEEEeeCCEEeeeCC------eeEEEEcccCcCCCee
Q psy14542         88 SAQVILGGELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSS--AKAWLKDGLVLRRNS------DEVLVLDRVQREDAGM  158 (371)
Q Consensus        88 ~~~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~--~v~W~~~~~~~~~~~------~~~~~~~~~~~~~~g~  158 (371)
                      .+.|.|...+..+...+. ..+.+|+.+.|.|.+.+.+++.  .++|++++..+....      ...|.+.....+|.|.
T Consensus        77 ~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~  156 (450)
T 1z7z_I           77 KTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAN  156 (450)
T ss_dssp             ECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCE
T ss_pred             EEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccccccceEEEEEeeccccCce
Confidence            788888844443433433 4558999999999999987723  899999999886432      3478899999999999


Q ss_pred             EEEEEeCCce--------------e------------E------e---------------c--c----------------
Q psy14542        159 YQCHIEDGKY--------------H------------M------L---------------S--S----------------  173 (371)
Q Consensus       159 y~~~~~~~~~--------------~------------~------~---------------~--~----------------  173 (371)
                      |+|.+.+...              .            +      .               .  .                
T Consensus       157 Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~~~  236 (450)
T 1z7z_I          157 FSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTV  236 (450)
T ss_dssp             EEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCCEE
T ss_pred             EEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCceE
Confidence            9998874310              0            0      0               0  0                


Q ss_pred             ----ceEEEE---EeecCCccc--eeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEE
Q psy14542        174 ----GELIIH---QVDESDRYR--SYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPC  244 (371)
Q Consensus       174 ----~~l~i~---~~~~~d~~g--~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C  244 (371)
                          ..+.+.   ++..+| .|  .|+|.+.|. .+......   .+.|...   .+|.+...  ... +.+|+.+.|.|
T Consensus       237 ~~~~~~~~~~~~~~v~~~d-~G~~~Y~C~a~n~-~g~~~~~~---~l~V~~~---~~p~i~~~--~~~-v~~G~~v~l~C  305 (450)
T 1z7z_I          237 TYGNDSFSAKASVSVTAED-EGTQRLTCAVILG-NQSQETLQ---TVTIYSF---PAPNVILT--KPE-VSEGTEVTVKC  305 (450)
T ss_dssp             EEETTEEEEEEEEECCGGG-CEEEEEEEEEEET-TEEEEEEE---EEEEECC---CCCEEEES--CSE-EETTCEEEEEE
T ss_pred             EecCCceeEEEEEEeEhhh-CCcEEEEEEEccC-CccEEEEE---EEEEecC---CCCeEecC--Cee-EeCCCcEEEEE
Confidence                001111   457889 99  999999998 67666666   7777732   23444432  334 89999999999


Q ss_pred             EeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCC-C---ceeEEEEEEecCcccccccce
Q psy14542        245 SAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEG-Q---DKMQLFIQYAHGKYHMLSSGE  320 (371)
Q Consensus       245 ~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-~---~~~~~~l~v~~~p~~~~~~~~  320 (371)
                      .+.  |.+.+.|  +|..+....    ....|.|..+..+|+|.|+|.|.|..+ .   ...++.|.|..+|.       
T Consensus       306 ~~~--p~p~i~W--~g~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~-------  370 (450)
T 1z7z_I          306 EAH--PRAKVTL--NGVPAQPLG----PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPR-------  370 (450)
T ss_dssp             EC--------------------C----CCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEE-------
T ss_pred             ecC--CCCEeEE--CCEEcCCCC----ceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCc-------
Confidence            997  8899999  777662221    235799999999999999999997665 3   34778888888877       


Q ss_pred             EEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        321 LIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                        +...  +            .|....+.+|+.+.|.|.+.|+|+|.|+|+
T Consensus       371 --~~~~--~------------~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~  405 (450)
T 1z7z_I          371 --LDER--D------------CPGNWTWPENSQQTPMCQAWGNPLPELKCL  405 (450)
T ss_dssp             --CCST--T------------SCSEEEEETTCEECCCCCCEEESCCEEEEE
T ss_pred             --eeec--c------------CCCceeEcCCCeEEEEEecccCCCCcEEEE
Confidence              3311  1            122337889999999999999999999996

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=4.4e-35  Score=270.54  Aligned_cols=315  Identities=17%  Similarity=0.297  Sum_probs=232.4

Q ss_pred             CCCcEEEeccCcEEEEEEecCCCC---CCeeEEEeCCEE-----Eee--------------------CCeeEEEEccCCc
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKRL---SSAKAWLKDGLV-----LRR--------------------NSDEVLVLDRVQR   68 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~~---~~~~~W~~~~~~-----~~~--------------------~~~~~l~i~~~~~   68 (371)
                      |.. +.+.+|++++|.|.+.. .+   ...+.|+|++..     +..                    ....+|.|.+++.
T Consensus         7 P~~-v~v~~G~~v~L~C~~~~-~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~   84 (585)
T 2ocw_A            7 PEE-VNSVEGNSVSITCYYPP-TSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ   84 (585)
T ss_pred             cce-eEEecCCcEEEEEeCCC-CcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCc
Confidence            455 88999999999996543 33   237999998642     100                    0235799999999


Q ss_pred             CCCeEEEEEEEcCCCCeEEEEEEEEecceeeEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEee--------
Q psy14542         69 EDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR--------  139 (371)
Q Consensus        69 ~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~--------  139 (371)
                      +|+|.|+|.+.+..+.....+.|.|. .+|.+...+.. .+.+|+.++|.|.+.+.++++.+.|++++....        
T Consensus        85 ~D~G~Y~C~~~n~~~~~~~~~~l~V~-~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~  163 (585)
T 2ocw_A           85 DDSGRYKCGLGINSRGLSFDVSLEVS-QGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSG  163 (585)
T ss_pred             ccCEEEEEEcccCCCCceEEEEEEEe-cCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCc
Confidence            99999999999888877888999998 55665554443 348999999999998766547899999874311        


Q ss_pred             -------------eCC----eeEEEEcccCcCCCeeEEEEEeCC------------------------------------
Q psy14542        140 -------------RNS----DEVLVLDRVQREDAGMYQCHIEDG------------------------------------  166 (371)
Q Consensus       140 -------------~~~----~~~~~~~~~~~~~~g~y~~~~~~~------------------------------------  166 (371)
                                   ...    ...|.+.+++.+|.|.|+|.+.+.                                    
T Consensus       164 ~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~~~~~~~G~~v~l~C~~~~  243 (585)
T 2ocw_A          164 YVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGP  243 (585)
T ss_pred             ccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCCCceeEEcCCCcEEEEEEcCC
Confidence                         000    126889999999999999655411                                    


Q ss_pred             ------ceeEe-c------------------------------cc--eEEEEEeecCCccceeEEEeeccccceee----
Q psy14542        167 ------KYHML-S------------------------------SG--ELIIHQVDESDRYRSYQCRGVNKLTGASL----  203 (371)
Q Consensus       167 ------~~~~~-~------------------------------~~--~l~i~~~~~~d~~g~y~C~~~~~~~~~~~----  203 (371)
                            .+... .                              ++  .|.|.+++.+| .|.|+|.+.|. .+...    
T Consensus       244 ~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d-~G~Y~C~a~n~-g~~~~~~~~  321 (585)
T 2ocw_A          244 EVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKED-AGRYLCGAHSD-GQLQEGSPI  321 (585)
T ss_pred             CCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhh-CEEEEEEEEcC-CCccccCce
Confidence                  01100 1                              12  68899999999 99999999986 33221    


Q ss_pred             eeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCce----EEEe--CCc--cccc---------C
Q psy14542        204 LSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTI----KWYK--QDS--PVEE---------S  266 (371)
Q Consensus       204 ~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v----~W~~--~~~--~~~~---------~  266 (371)
                      ...   .|.|.     .+|.+...+.... +..|+.+.|.|.+.+.|.+.+    .|++  +|.  .+..         .
T Consensus       322 ~~~---~l~V~-----~~p~~~~~~~~~~-~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~  392 (585)
T 2ocw_A          322 QAW---QLFVN-----EESTIPRSPTVVK-GVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYE  392 (585)
T ss_pred             eeE---EEEEe-----cccccccCCcceE-EEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccC
Confidence            344   67777     5666666666666 889999999999999999877    7999  876  4432         2


Q ss_pred             CceEE----ecce--EEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcccccccceEEEEeeeecccccccccccc
Q psy14542        267 DRIQR----IGSS--LSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMF  340 (371)
Q Consensus       267 ~~~~~----~~~~--l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (371)
                      .++..    .++.  |.|.++..+|+|.|+|.| |..|.....+.|.|..+|+         ..  ..|           
T Consensus       393 ~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p---------~~--~~~-----------  449 (585)
T 2ocw_A          393 GRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEP---------NL--KVP-----------  449 (585)
T ss_pred             CCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCcc---------cc--ccC-----------
Confidence            33332    2233  999999999999999999 9999999999999987655         22  111           


Q ss_pred             ccceeeeeecCCeEEEeeeee----cCCCCccccC
Q psy14542        341 EKHRILNVKKDESVILPCSAQ----GNPLPTIKYR  371 (371)
Q Consensus       341 ~~~~~~~~~~g~~~~l~C~~~----g~p~p~i~W~  371 (371)
                         ....+.+|+.+.|.|.+.    |.|.|.|+|+
T Consensus       450 ---~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~  481 (585)
T 2ocw_A          450 ---GNVTAVLGETLKVPCHFPCKFSSYEKYWCKWN  481 (585)
T ss_pred             ---CceeEecCCcEEEEEEecCCCCCCccEEEEEe
Confidence               122788999999999997    6788899996

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=4.7e-36  Score=287.32  Aligned_cols=283  Identities=22%  Similarity=0.352  Sum_probs=226.8

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCE------EEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGL------VLRRN-----SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSA   89 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~------~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   89 (371)
                      ..+.+|+.+.|.| ...+.|.+.+.|+|++.      .+...     ...+|.|.+++.+|+|.|+|.+.|..+.....+
T Consensus       258 ~~v~~g~~v~L~C-~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~  336 (816)
T 3dmk_A          258 KTYSGSSTMALLC-PAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVET  336 (816)
T ss_dssp             EEECTTSCEEECC-CCBCSSCCEEEEEEECTTSSCEEECCCSSSEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             eEEeCCCeEEEEE-EeeecCCCeEEEEeCCCCCccCcceecCCceEeccceEEECCCCHhHCEEEEEEEEcCCCceEEEE
Confidence            5788999999999 55678899999998432      11111     345899999999999999999999988888888


Q ss_pred             EEEEecceeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCce
Q psy14542         90 QVILGGELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKY  168 (371)
Q Consensus        90 ~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~  168 (371)
                      .|.|. .++.+...+. ..+.+|+.+.|.|.+.+.+. +.+.|++++..+....                          
T Consensus       337 ~l~V~-~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~-~~v~W~k~g~~~~~~~--------------------------  388 (816)
T 3dmk_A          337 VLTVT-APLSAKIDPPTQTVDFGRPAVFTCQYTGNPI-KTVSWMKDGKAIGHSE--------------------------  388 (816)
T ss_dssp             EEEEC-EEEEEEEESSEEECCTTSCEEEEEEEEEECC-CEEEEEETTEECSCCS--------------------------
T ss_pred             EEEEc-CCCceeeCCCceEecCCCCEEEEEEEeccCC-CEEEEEECCEECCCCC--------------------------
Confidence            88888 4554444443 44489999999999998877 8999999998775431                          


Q ss_pred             eEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec
Q psy14542        169 HMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG  248 (371)
Q Consensus       169 ~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~  248 (371)
                           ..|.|.+++.+| .|.|+|.+.|. .+....+.   .+.|...  ..+|.+...+.... +..|+.+.|.|.+.|
T Consensus       389 -----~~L~i~~v~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~v~~~--~~~p~i~~~~~~~~-v~~G~~v~L~C~~~g  455 (816)
T 3dmk_A          389 -----SVLRIESVKKED-KGMYQCFVRND-RESAEASA---ELKLGGR--FDPPVIRQAFQEET-MEPGPSVFLKCVAGG  455 (816)
T ss_dssp             -----SEEEESSCCGGG-CEEEEEEEECS-SCEEEECC---EEECCCS--SCCCEEEEECCCEE-ECSSSCEEEEEEEEC
T ss_pred             -----CEEEEcCCCHHH-CEEEEEEEECC-CCcEEEEE---EEEEccc--cCCCceEecCcceE-EcCCCCEEEEEEEec
Confidence                 578999999999 99999999998 66655555   6666421  14666666555555 899999999999999


Q ss_pred             CCCCceEEEeCCcccccCCceEEe---------cceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcccccccc
Q psy14542        249 NPLPTIKWYKQDSPVEESDRIQRI---------GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSG  319 (371)
Q Consensus       249 ~p~~~v~W~~~~~~~~~~~~~~~~---------~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~  319 (371)
                      .|.+.+.|+++|..+....++...         ...|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.      
T Consensus       456 ~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~------  529 (816)
T 3dmk_A          456 NPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPY------  529 (816)
T ss_dssp             SSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSCE------
T ss_pred             CCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCCe------
Confidence            999999999999988777665421         13699999999999999999999999999999999988887      


Q ss_pred             eEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        320 ELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                         +.  ..+.               ..+.+|+.+.|.|.+.|.|.|.++|+
T Consensus       530 ---~~--~~~~---------------~~v~~G~~v~l~C~~~g~p~~~i~W~  561 (816)
T 3dmk_A          530 ---IR--QMEK---------------KAIVAGETLIVTCPVAGYPIDSIVWE  561 (816)
T ss_dssp             ---EC--CCCC---------------EEEETTCCEEEECCEECSSEEEEEEE
T ss_pred             ---eE--ccCC---------------eEEecCCeEEEEEEecCCCCCEEEEE
Confidence               43  1111               16779999999999999999999995

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=100.00  E-value=1.7e-36  Score=258.51  Aligned_cols=273  Identities=15%  Similarity=0.218  Sum_probs=197.7

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAGMYQCHVSAD   81 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~~   81 (371)
                      .+|.+. .|.. ..+.+|++++|.|.+....|.+.+.|++++..+...       ....|.|.+++.+|+|.|+|.+.+.
T Consensus         6 ~~P~~~-~~~~-~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~   83 (317)
T 2y25_A            6 TGPHFV-EYLS-WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDD   83 (317)
T ss_dssp             SCCEEE-EEEE-EEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESS
T ss_pred             CCCcEe-eeee-EEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECC
Confidence            345565 4555 889999999999976555578899999999988754       4469999999999999999999998


Q ss_pred             CCCeEEEEEEEEecceeeEecC-CceeeecCCcEEEEEEe---------cCCCCCceEEEeeCCEEeeeCCeeEEEEccc
Q psy14542         82 DDSAQMSAQVILGGELVEIASS-NQVVVDVGHRIELHCRV---------SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRV  151 (371)
Q Consensus        82 ~~~~~~~~~l~v~~~~~~~~~~-~~~~~~~g~~v~l~C~~---------~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~  151 (371)
                      .+.....+.|.|.. ++.+... ....+..|+.+.|.|.+         .+..+.+.+.|++++..+...........  
T Consensus        84 ~g~~~~~~~l~v~~-~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~--  160 (317)
T 2y25_A           84 RGKDKSRLKLVDEA-FKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVT--  160 (317)
T ss_dssp             SCEEEEEECCSTHH-HHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEEC--
T ss_pred             CCcEEEEEEEEEec-CccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEecc--
Confidence            88776666666652 2221111 11112345555555554         44333389999999987765432211110  


Q ss_pred             CcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecc---------------
Q psy14542        152 QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTEN---------------  216 (371)
Q Consensus       152 ~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~---------------  216 (371)
                                   .      ....|.|.+++.+| .|.|+|.+.|. .+....+.   .+.+...               
T Consensus       161 -------------~------~~~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~v~~~~~~~~~~~~~~~~~~  216 (317)
T 2y25_A          161 -------------G------EQIWLQINEPTPND-KGKYVMELFDG-KTGHQKTV---DLSGQAYDEAYAEFQRLKQAAI  216 (317)
T ss_dssp             -------------S------SEEEEEEESCCGGG-CEEEEEEEECS-SCEEEEEE---EECHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------C------CEEEEEECcCCccc-CeeEEEEEEeC-CceEEEEE---EEeeeeccccchhhcccCCccc
Confidence                         0      11469999999999 99999999998 66665555   5544310               


Q ss_pred             hhccccceeee-eeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecc-----eEEEeccCCCCCeEEE
Q psy14542        217 KRLLSAAKMFE-KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS-----SLSISHVEESDSGVWN  290 (371)
Q Consensus       217 ~~~~~p~~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-----~l~i~~~~~~d~G~Y~  290 (371)
                      .....|.+... +.... +..|+.+.|.|.+.|.|.+.+.|++++..+..+.++.....     .|.|.++..+|+|.|+
T Consensus       217 ~~~~~p~~~~~~~~~~~-v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  295 (317)
T 2y25_A          217 AEKNRARVLGGLPDVVT-IQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYG  295 (317)
T ss_dssp             HTTTSCEEEEBCCSEEE-EETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEE
T ss_pred             CcCCCCcccccCCccEE-EEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEE
Confidence            00112333332 33344 89999999999999999999999999999888777664332     8999999999999999


Q ss_pred             EEEEcCCCCceeEEEEEEecC
Q psy14542        291 CVANNSEGQDKMQLFIQYAHG  311 (371)
Q Consensus       291 C~a~n~~g~~~~~~~l~v~~~  311 (371)
                      |.|.|..|....++.|.|..|
T Consensus       296 C~a~N~~g~~~~~~~l~V~~P  316 (317)
T 2y25_A          296 LVVKNKYGSETSDFTVSVFIP  316 (317)
T ss_dssp             EEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEeCCCeEEEEEEEEEEcC
Confidence            999999999999999988754

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=100.00  E-value=5.9e-36  Score=259.95  Aligned_cols=258  Identities=13%  Similarity=0.201  Sum_probs=199.6

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee--------------------------CCeeEEEEccCCcCCCeEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR--------------------------NSDEVLVLDRVQREDAGMY   74 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~--------------------------~~~~~l~i~~~~~~d~G~Y   74 (371)
                      +.+.+|++++|.|. ..+.|.+.+.|+|++..+..                          ....+|.|.+++.+|+|.|
T Consensus         4 v~~~~G~~v~L~C~-~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   82 (363)
T 1wio_A            4 VLGKKGDTVELTCT-ASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (363)
T ss_dssp             EEEETTSCEEECCC-CTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEE
T ss_pred             EEEeCCCeEEEEEE-ecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEE
Confidence            67899999999995 44778889999999753210                          0255799999999999999


Q ss_pred             EEEEEcCCCCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcC
Q psy14542         75 QCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE  154 (371)
Q Consensus        75 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  154 (371)
                      +|.+.+.    ...+.|.|..    +...+...+.+|+.++|.|.+.+.+. +.+.|++++..+..              
T Consensus        83 ~C~~~n~----~~~~~l~V~~----~~~~~~~~v~~G~~v~l~C~~~~~p~-~~v~W~~~~~~~~~--------------  139 (363)
T 1wio_A           83 ICEVEDQ----KEEVQLLVFG----LTANSDTHLLQGQSLTLTLESPPGSS-PSVQCRSPRGKNIQ--------------  139 (363)
T ss_dssp             EEEETTE----EEEEEEEEEE----EEESSCSSEESBSCEEEEEECCTTCC-CCEEEECSSSCEEE--------------
T ss_pred             EEEEEEC----CCcEEEEEEe----CCCCCceEEecCCCEEEEEEcCCCCC-CeEEEEcCCCcccc--------------
Confidence            9999775    3466777762    23344445689999999999988766 89999998754321              


Q ss_pred             CCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeee
Q psy14542        155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNV  234 (371)
Q Consensus       155 ~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~  234 (371)
                                       ....|.|.++..+| +|.|+|.+.+. .+......   .+.|.     .+|...   .... +
T Consensus       140 -----------------~~~~L~i~~v~~~d-~G~Y~C~a~~~-~~~~~~~~---~l~v~-----~~p~~~---~~~~-~  188 (363)
T 1wio_A          140 -----------------GGKTLSVSQLELQD-SGTWTCTVLQN-QKKVEFKI---DIVVL-----AFQKAS---SIVY-K  188 (363)
T ss_dssp             -----------------ESSEEEECSBCGGG-CEECEEEEEET-TEEEEECC---EECEE-----CCSCSE---EEEE-E
T ss_pred             -----------------cceEEEEeeCChhc-CCEEEEEEecC-CCeEEEEE---EEEEe-----cCCCCC---CceE-E
Confidence                             12689999999999 99999999987 55555444   56555     333322   3333 8


Q ss_pred             ecCCeEEEEEEeec-----CCCCceEEEeCCccccc--------CCceEE------------e--cceEEEeccCCCCCe
Q psy14542        235 KKDESVILPCSAQG-----NPLPTIKWYKQDSPVEE--------SDRIQR------------I--GSSLSISHVEESDSG  287 (371)
Q Consensus       235 ~~g~~~~l~C~~~~-----~p~~~v~W~~~~~~~~~--------~~~~~~------------~--~~~l~i~~~~~~d~G  287 (371)
                      .+|+.+.|.|.+.+     .|.+.+.|+++|..+..        +.++..            .  ...|.|.++..+|+|
T Consensus       189 ~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G  268 (363)
T 1wio_A          189 KEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAG  268 (363)
T ss_dssp             ETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCE
T ss_pred             ecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCc
Confidence            88999999998877     77889999999988765        344432            2  338999999999999


Q ss_pred             EEEEEEEcC--CCCceeEEEEEEecCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCC
Q psy14542        288 VWNCVANNS--EGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL  365 (371)
Q Consensus       288 ~Y~C~a~n~--~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~  365 (371)
                      .|+|.|.|.  .|.....+.|.|.   .         +                          .|+.+.|.|.+.|.|+
T Consensus       269 ~Y~C~a~n~~~~g~~~~~~~l~V~---~---------v--------------------------~g~~~~l~C~~~g~p~  310 (363)
T 1wio_A          269 SGNLTLALEAKTGKLHQEVNLVVM---R---------A--------------------------TQLQKNLTCEVWGPTS  310 (363)
T ss_dssp             EEEEEECBTTTTCCEEEEEEEEEE---E---------E--------------------------CCCSSSEEEEEESSCC
T ss_pred             EEEEEEEEhhhcCeEEEEEeEEEE---E---------e--------------------------cCCCeeEEEEEccccC
Confidence            999999999  9988888887765   2         0                          2788999999999999


Q ss_pred             Cc--cccC
Q psy14542        366 PT--IKYR  371 (371)
Q Consensus       366 p~--i~W~  371 (371)
                      |.  ++|+
T Consensus       311 p~~~i~W~  318 (363)
T 1wio_A          311 PKLMLSLK  318 (363)
T ss_dssp             TTCCEEEE
T ss_pred             CCccEEEE
Confidence            98  9995

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=2.2e-35  Score=258.10  Aligned_cols=254  Identities=25%  Similarity=0.397  Sum_probs=199.8

Q ss_pred             CcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEE---
Q psy14542         19 GQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMS---   88 (371)
Q Consensus        19 ~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~---   88 (371)
                      ....+.+|+.+.|.|....+.+.+.+.|++++..+...       ..+.|.|.+++.+|+|.|+|.+.|..+.....   
T Consensus       110 ~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~  189 (384)
T 3kld_A          110 STVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPP  189 (384)
T ss_dssp             CCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCC
T ss_pred             CceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcCCCcEEEeecCHHHCceEEEEEecccccceeeCCc
Confidence            34789999999999965555677899999998765432       45679999999999999999999987654311   


Q ss_pred             EEEEEe------cceeeEec--CCceeeecCCcEEEEEEecCCCCCceEEEeeCCE-EeeeCCeeEEEEcccCcCCCeeE
Q psy14542         89 AQVILG------GELVEIAS--SNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGL-VLRRNSDEVLVLDRVQREDAGMY  159 (371)
Q Consensus        89 ~~l~v~------~~~~~~~~--~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~g~y  159 (371)
                      ..+.+.      ...|.+..  .....+.+|+.+.|.|.+.+.|. +.+.|++++. .+....                 
T Consensus       190 ~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~-p~i~W~k~~~~~~~~~~-----------------  251 (384)
T 3kld_A          190 TPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPV-PTILWRRADGKPIARKA-----------------  251 (384)
T ss_dssp             EEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESC-CEEEEEETTCCCCCTTC-----------------
T ss_pred             eEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCC-CcEEEEeCCCccccccc-----------------
Confidence            122221      01222222  22334488999999999999888 8999999543 332211                 


Q ss_pred             EEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCe
Q psy14542        160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDES  239 (371)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~  239 (371)
                              .....++.|.|.+++.+| +|.|+|.|.|. .|......   .+.|.     .+|.+...+.... +..|+.
T Consensus       252 --------~~~~~~~~L~I~~v~~~D-~G~Y~C~a~N~-~G~~~~~~---~l~v~-----~~P~~~~~~~~~~-v~~g~~  312 (384)
T 3kld_A          252 --------RRHKSNGILEIPNFQQED-AGSYECVAENS-RGKNVAKG---QLTFY-----AQPNWVQIINDIH-VAMEES  312 (384)
T ss_dssp             --------EECTTSCEEEECSCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEE-----EEEEEEECCCCEE-ECTTCC
T ss_pred             --------eecCCCcEEEECCCChhh-CEEEEEEEEcC-CCeEEEEE---EEEEe-----cCCccccCCCceE-ecCCCC
Confidence                    001123679999999999 99999999999 77776666   78887     6677766666666 899999


Q ss_pred             EEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542        240 VILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA  309 (371)
Q Consensus       240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  309 (371)
                      +.|.|.+.|.|.|.+.|+++|..+....++...+++|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       313 v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~  382 (384)
T 3kld_A          313 VFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI  382 (384)
T ss_dssp             EEEECEEEEESCCEEEEEETTEECCCBTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEeECCccCCCeEEEEECCEECCCCccEEEeCCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence            9999999999999999999999998888888888899999999999999999999999999999999885

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=100.00  E-value=2.9e-35  Score=262.21  Aligned_cols=309  Identities=20%  Similarity=0.287  Sum_probs=203.7

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCCC----CeeEEEeCC--EEE---e------------------eCCeeEEEE
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLS----SAKAWLKDG--LVL---R------------------RNSDEVLVL   63 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~----~~~~W~~~~--~~~---~------------------~~~~~~l~i   63 (371)
                      +.|...|.. +.+.+|++++|.|.+ .+.+.    +.+.|+|++  ..+   .                  .....+|.|
T Consensus         2 ~~v~~~p~~-~~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I   79 (438)
T 1qgc_4            2 IVLTQSPAS-LAVSLGQRATISCRA-SESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTI   79 (438)
T ss_dssp             CCEEEECSE-EEECTTSCEEEEEEE-SSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEE
T ss_pred             CceEecCCe-EEeeCCCCEEEEEec-CCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEe
Confidence            345566776 889999999999964 44444    479999952  211   0                  013568999


Q ss_pred             ccCCcCCCeEEEEEEEcCCCCe-EEEEEEEEec--ceeeEecCC-ceeeecCCcEEEEEEecCC-CCCceEEEeeCCEEe
Q psy14542         64 DRVQREDAGMYQCHVSADDDSA-QMSAQVILGG--ELVEIASSN-QVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVL  138 (371)
Q Consensus        64 ~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~--~~~~~~~~~-~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~  138 (371)
                      .+++.+|+|.|+|.+.+..+.. ...+.|.|..  .+|.+...+ .....+|+.+.|.|.+.+. |.+..++|++++..+
T Consensus        80 ~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~  159 (438)
T 1qgc_4           80 DPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER  159 (438)
T ss_dssp             SSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred             CCCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEc
Confidence            9999999999999999876533 3334555542  244444322 2222468899999999874 442389999999987


Q ss_pred             eeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchh
Q psy14542        139 RRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKR  218 (371)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~  218 (371)
                      .......   ........|.|         ..  .+.|.|.++..+| +|.|+|.+.|. .+....     .+.+...  
T Consensus       160 ~~~~~~~---~~~~~~~~~~~---------~~--~~~L~i~~~~~~d-~G~Y~C~a~n~-~~~~~~-----~~~~~~~--  216 (438)
T 1qgc_4          160 QNGVLNS---WTDQDSKDSTY---------SM--SSTLTLTKDEYER-HNSYTCEATHK-TSTSPI-----VKSFNRN--  216 (438)
T ss_dssp             CTTEEEE---EECCCTTTCCE---------EE--EEEEEEEHHHHHT-CCEEEEEEEET-TCSSCE-----EEEEETT--
T ss_pred             CCCceec---cccccCCCCcE---------EE--EEEEEEeCcccCC-CCeEEEEEEec-ccCCce-----ecccccc--
Confidence            6541110   11111222322         11  2689999999999 99999999998 554322     2222211  


Q ss_pred             ccccceeeeeeeeeeeecCCeEEEEEEeecCC--CCceEEEeC--Ccccc-----------------cCCceEEe-----
Q psy14542        219 LLSAAKMFEKHRILNVKKDESVILPCSAQGNP--LPTIKWYKQ--DSPVE-----------------ESDRIQRI-----  272 (371)
Q Consensus       219 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~--~~~~~-----------------~~~~~~~~-----  272 (371)
                       ..+.....+.... +..|+.+.|.|.+.|.|  .+.+.|+++  +..+.                 ...++...     
T Consensus       217 -~~~~~~~~~~~~~-v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  294 (438)
T 1qgc_4          217 -ECEVMLVESGGGL-VKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAK  294 (438)
T ss_dssp             -C-CCEEEEECCEE-ECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTT
T ss_pred             -cceeEEecCCceE-EecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCC
Confidence             1222222334444 89999999999999988  678999997  44332                 12344422     


Q ss_pred             -cceEEEeccCCCCCeEEEEEEEcCCC-----CceeEEEEEEec----CcccccccceEEEEeeeecccccccccccccc
Q psy14542        273 -GSSLSISHVEESDSGVWNCVANNSEG-----QDKMQLFIQYAH----GKYHMLSSGELIIHQVDEKNKRLLSAAKMFEK  342 (371)
Q Consensus       273 -~~~l~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (371)
                       ...|.|.++..+|+|.|+|.|.|..+     .......|.|..    +|.         +. ...|..           
T Consensus       295 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~---------v~-~~~~~~-----------  353 (438)
T 1qgc_4          295 NTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPS---------VY-PLAPGS-----------  353 (438)
T ss_dssp             TEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCE---------EE-EECCCG-----------
T ss_pred             CeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCe---------EE-EcCccc-----------
Confidence             23799999999999999999999544     222345666664    233         22 122222           


Q ss_pred             ceeeeeecCCeEEEeeeeecC-CCC-ccccC
Q psy14542        343 HRILNVKKDESVILPCSAQGN-PLP-TIKYR  371 (371)
Q Consensus       343 ~~~~~~~~g~~~~l~C~~~g~-p~p-~i~W~  371 (371)
                          .+.+|+.++|.|.+.|+ |.| .|+|+
T Consensus       354 ----~~~~g~~v~L~C~~~g~~P~~~~v~W~  380 (438)
T 1qgc_4          354 ----AAAAASMVTLGCLVKGYFPEPVTVTWN  380 (438)
T ss_dssp             ----GGCCSSEEEEEEEEESCBSSCCEEEEG
T ss_pred             ----ccccCCcEEEEEEeccccCCCcEEEEe
Confidence                45589999999999998 878 99996

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=100.00  E-value=4.1e-35  Score=267.01  Aligned_cols=309  Identities=14%  Similarity=0.197  Sum_probs=210.9

Q ss_pred             EeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC--EE---Eee------------------CCeeEEEEccCCcCCC
Q psy14542         15 MSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG--LV---LRR------------------NSDEVLVLDRVQREDA   71 (371)
Q Consensus        15 ~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~--~~---~~~------------------~~~~~l~i~~~~~~d~   71 (371)
                      ..|.. +.+.+|++++|.|.+ .+.+.+.+.|+|++  ..   +..                  ....+|.|.+++.+|+
T Consensus         5 ~~p~~-~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   82 (523)
T 2rcj_C            5 TQPPS-ASGTPGQRVTISCTG-TSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDE   82 (523)
T ss_pred             ccCCc-eEEecCCcEEEEEEE-eccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhC
Confidence            34555 889999999999965 45678899999964  11   100                  1345899999999999


Q ss_pred             eEEEEEEEcCCCCe---EEEEEEEEec---ceeeEecCCce-eeecCCcEEEEEEecCCCCC-ceEEEeeCCEEeeeCCe
Q psy14542         72 GMYQCHVSADDDSA---QMSAQVILGG---ELVEIASSNQV-VVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRNSD  143 (371)
Q Consensus        72 G~Y~C~~~~~~~~~---~~~~~l~v~~---~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~  143 (371)
                      |.|+|.+.+..+..   ...+.|.|..   .+|.+...+.. ...+|+.+.|.|.+.+.+++ ..++|+++|..+.....
T Consensus        83 G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~  162 (523)
T 2rcj_C           83 SDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVE  162 (523)
T ss_pred             EEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceE
Confidence            99999999876532   2446677731   34444443333 33679999999999987663 49999999987764321


Q ss_pred             eEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccc
Q psy14542        144 EVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAA  223 (371)
Q Consensus       144 ~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~  223 (371)
                      ..    .......|         .+..  .+.|.|.++..+| +|.|+|.+.|. .+......   .+.+.. ....+|.
T Consensus       163 ~~----~~~~~~~~---------~~~~--~s~L~i~~~~~~d-~G~Y~C~a~n~-~~~~~~~~---~~~~~~-~~~~~P~  221 (523)
T 2rcj_C          163 TT----KPSKQSNN---------KYAA--SSYLSLTPEQWKS-HRSYSCQVTHE-GSTVEKTV---APTECS-ASTKGPS  221 (523)
T ss_pred             ec----cccccCCC---------CEEE--EEEEEEechhcCC-CceEEEEEEec-Ccccccce---eeeecC-CCCcCCE
Confidence            11    00111222         2222  2579999999999 99999999998 55443333   221110 1114455


Q ss_pred             eeeeeeeeeeeecCCeEEEEEEeecC-CCC-ceEEEeCCcccccCC--ceE------EecceEEEeccCCCCCeEEEEEE
Q psy14542        224 KMFEKHRILNVKKDESVILPCSAQGN-PLP-TIKWYKQDSPVEESD--RIQ------RIGSSLSISHVEESDSGVWNCVA  293 (371)
Q Consensus       224 ~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~--~~~------~~~~~l~i~~~~~~d~G~Y~C~a  293 (371)
                      +........ +..|+.+.|.|.+.|. |.+ .|.|++++..+....  +..      ...+.|.|.++..+| |.|+|.|
T Consensus       222 v~~~~~~~~-~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a  299 (523)
T 2rcj_C          222 VFPLAPSSK-STSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNV  299 (523)
T ss_pred             EEecCCCcc-cccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEE
Confidence            443333334 7889999999999886 777 899999998654211  111      123479999999999 9999999


Q ss_pred             EcCCCCceeEEEEEEecCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCC----Cccc
Q psy14542        294 NNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL----PTIK  369 (371)
Q Consensus       294 ~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~----p~i~  369 (371)
                      .|..|.......|.|...|.         +. +..|....             .+.+|+.+.|.|.+.|.|+    +.|+
T Consensus       300 ~n~~g~~~~~~~l~v~~~P~---------~~-~~~p~~~~-------------~v~~g~~~~l~C~~~g~~p~~~~~~v~  356 (523)
T 2rcj_C          300 NHKPSNTKVDKRVEPLSLPS---------VF-LFPPKPKD-------------TLMISRTPEVTCVVVDVSHEDPQVKFN  356 (523)
T ss_pred             EeCCCCcceEEecCCCcCce---------EE-ecCCCchh-------------hcccCCceEEEEEEecccCCCCceEEE
Confidence            99999987777777766665         33 22222110             2678999999999999764    4899


Q ss_pred             cC
Q psy14542        370 YR  371 (371)
Q Consensus       370 W~  371 (371)
                      |+
T Consensus       357 W~  358 (523)
T 2rcj_C          357 WY  358 (523)
T ss_pred             EE
Confidence            96

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=100.00  E-value=5.8e-35  Score=266.02  Aligned_cols=310  Identities=15%  Similarity=0.223  Sum_probs=209.1

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCC-CeeEEEeCCEEEeeC---------C------eeEEEEccCCcCCC
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRN---------S------DEVLVLDRVQREDA   71 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~~~---------~------~~~l~i~~~~~~d~   71 (371)
                      ..+|.+.+.|.. ..+.+|+.++|.|.+....|. ..+.|+|+|..+...         .      ...|.|.+++.+|+
T Consensus       112 ~~~P~~~~~~~~-~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~  190 (523)
T 2rcj_C          112 KANPTVTLFPPS-SEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSH  190 (523)
T ss_pred             CcCCeEEecCCc-ccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCC
Confidence            346777777777 667789999999976544443 489999998776432         1      13699999999999


Q ss_pred             eEEEEEEEcCCCCeEEEEEEEEe---cceeeEe-cCCceeeecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEE
Q psy14542         72 GMYQCHVSADDDSAQMSAQVILG---GELVEIA-SSNQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVL  146 (371)
Q Consensus        72 G~Y~C~~~~~~~~~~~~~~l~v~---~~~~~~~-~~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~  146 (371)
                      |.|+|.+.+..+.....+.+.+.   ..+|.+. ..+...+.+|+.+.|.|.+.+. |.+..++|++++..+....... 
T Consensus       191 G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~-  269 (523)
T 2rcj_C          191 RSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPA-  269 (523)
T ss_pred             ceEEEEEEecCcccccceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCc-
Confidence            99999999987766555554321   1333433 2333344789999999999887 5534899999987643211000 


Q ss_pred             EEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceee
Q psy14542        147 VLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF  226 (371)
Q Consensus       147 ~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~  226 (371)
                          . ....|         .+..  .+.|.|.++..+|  |.|+|.|.|. .|......   .+.+.     ..|.+..
T Consensus       270 ----~-~~~~g---------~~~~--~s~L~i~~~~~~d--G~Y~C~a~n~-~g~~~~~~---~l~v~-----~~P~~~~  322 (523)
T 2rcj_C          270 ----V-LQSSG---------LYSL--SSVVTVPSSSLGT--QTYICNVNHK-PSNTKVDK---RVEPL-----SLPSVFL  322 (523)
T ss_pred             ----E-ecCCC---------cEEE--EEEEEechhhcCC--ceEEEEEEeC-CCCcceEE---ecCCC-----cCceEEe
Confidence                0 01112         2222  2679999998766  9999999998 66554444   55554     3344332


Q ss_pred             eeeeee-eeecCCeEEEEEEeecCCC----CceEEEeCCcccccCCceE---------EecceEEEeccCCCCCeEEEEE
Q psy14542        227 EKHRIL-NVKKDESVILPCSAQGNPL----PTIKWYKQDSPVEESDRIQ---------RIGSSLSISHVEESDSGVWNCV  292 (371)
Q Consensus       227 ~~~~~~-~~~~g~~~~l~C~~~~~p~----~~v~W~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~G~Y~C~  292 (371)
                      .+.... .+..|+.+.|.|.+.|.|+    +.|.|+++|..+.......         ...+.|.|..+..+|+|.|+|.
T Consensus       323 ~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~  402 (523)
T 2rcj_C          323 FPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCK  402 (523)
T ss_pred             cCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEE
Confidence            222111 2678999999999998653    4899999998876543211         1224588999999999999999


Q ss_pred             EEcCCCCceeEEEEE----EecCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCC--
Q psy14542        293 ANNSEGQDKMQLFIQ----YAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP--  366 (371)
Q Consensus       293 a~n~~g~~~~~~~l~----v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p--  366 (371)
                      |.|..+.......+.    +..+|.         +. +..+...              .+..| .++|.|.+.|.|+|  
T Consensus       403 a~n~~~~~~~~~~~~~~~~~~~~P~---------v~-~~~~~~~--------------~~~~~-~~~l~C~~~g~~p~~~  457 (523)
T 2rcj_C          403 VSNKALPAPIEKTISKAKGQPREPQ---------VY-TLPPSRE--------------EMTKN-QVSLTCLVKGFYPSDI  457 (523)
T ss_pred             EeCCCCCCceeEEEEcccCCCCCCE---------EE-EeCCChH--------------HccCC-ceEEEEEEEeeECCCC
Confidence            999888766555555    345555         44 1221111              23344 49999999998776  


Q ss_pred             ccccC
Q psy14542        367 TIKYR  371 (371)
Q Consensus       367 ~i~W~  371 (371)
                      .|+|+
T Consensus       458 ~v~W~  462 (523)
T 2rcj_C          458 AVEWE  462 (523)
T ss_pred             EEEEE
Confidence            89995

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=100.00  E-value=1.5e-34  Score=243.26  Aligned_cols=270  Identities=17%  Similarity=0.262  Sum_probs=196.5

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEE----eeCCeeEEEEccCCcCCCeEEEEEEEcCCC
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL----RRNSDEVLVLDRVQREDAGMYQCHVSADDD   83 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~   83 (371)
                      .++|.+...+.. +.+.+|++++|.|.+. +    .+.|++++...    ......+|.|.+++.+|+|.|+|.+.+..+
T Consensus         2 ~p~p~i~~~~~~-~~v~~G~~v~L~C~~~-~----~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~   75 (289)
T 3ejj_X            2 DPAPVIEPSGPE-LVVEPGETVTLRCVSN-G----SVEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPM   75 (289)
T ss_dssp             --CCEEESCSSE-EEECTTCCEEEEEECS-S----CCEEECSCSSSSEECCCSSCCEEEESSCCGGGCEEEEEECCC---
T ss_pred             CCCcEecCCCce-EEECCCCCEEEEEEeC-C----cEEEccCCCceEEEeccCCccEEEEeeeccccCEEEEEEEeccCC
Confidence            456777777776 8899999999999543 3    49999876321    111668999999999999999999998878


Q ss_pred             CeEEEEEEEEecceeeEecC-CceeeecCCcEEEEEEecCCCCCceEEEee-CCEEeeeCCeeEEEEcccCcCCCeeEEE
Q psy14542         84 SAQMSAQVILGGELVEIASS-NQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRNSDEVLVLDRVQREDAGMYQC  161 (371)
Q Consensus        84 ~~~~~~~l~v~~~~~~~~~~-~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~g~y~~  161 (371)
                      .....+.|.|...+..+... ....+.+|+.+.|.|.+.+.+.+..+.|++ ++..+...                    
T Consensus        76 ~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~--------------------  135 (289)
T 3ejj_X           76 AGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRK--------------------  135 (289)
T ss_dssp             --CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTT--------------------
T ss_pred             cceeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCC--------------------
Confidence            77888899998433323333 334458999999999999876634599986 55544332                    


Q ss_pred             EEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEE
Q psy14542        162 HIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVI  241 (371)
Q Consensus       162 ~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~  241 (371)
                          .++....+..|.|.++..+| .|.|+|.+.+...+......   .+.|.... ..+|.+...+.... +..|+.+.
T Consensus       136 ----~~~~~~~~~~L~i~~v~~~d-~G~Y~C~a~~~~~~~~~~~~---~l~V~~~~-~~~p~i~~~~~~~~-~~~g~~~~  205 (289)
T 3ejj_X          136 ----TVYFFSPWRGFIIRKAKVLD-SNTYVCKTMVNGRESTSTGI---WLKVNRVH-PEPPQIKLEPSKLV-RIRGEAAQ  205 (289)
T ss_dssp             ----CCEEEETTTEEEESSCCGGG-CEEEEEEEEETTEEEECCCE---EEEEESSC-CCCCEEEEESSSEE-CCSSSCEE
T ss_pred             ----ccEEECCCCCEEEeeccccc-CEEEEEEEEeCCCccccccE---EEEEEECC-CCCCeEEecCCceE-EEeCCcEE
Confidence                23334445689999999999 99999999843244444444   66665321 13566666666655 78999999


Q ss_pred             EEEEeec-CCCCceEEEeCCcccccCCc------eEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542        242 LPCSAQG-NPLPTIKWYKQDSPVEESDR------IQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       242 l~C~~~~-~p~~~v~W~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      |.|.+.+ .|.+.+.|++++..+.....      .....+.|.|.++..+|+|.|+|.|.|..|....++.|.+..++.
T Consensus       206 l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~~  284 (289)
T 3ejj_X          206 IVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHH  284 (289)
T ss_dssp             EEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC----
T ss_pred             EEEEeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEeccc
Confidence            9999998 78899999999987765422      123356899999999999999999999999999999999887765

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=100.00  E-value=1.2e-34  Score=243.94  Aligned_cols=264  Identities=17%  Similarity=0.227  Sum_probs=194.1

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEE--eeCCeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL--RRNSDEVLVLDRVQREDAGMYQCHVSADDDSA   85 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   85 (371)
                      ..+|.|...+.. ..+.+|++++|.|.+. +    .+.|++++..+  .......|.|.+++.+|+|.|+|.+.+  +. 
T Consensus        10 ~~~P~i~~~~~~-~~v~~G~~v~l~C~~~-~----~i~W~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n--g~-   80 (290)
T 2o26_X           10 PSPPSIHPAQSE-LIVEAGDTLSLTCIDP-D----FVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSN--GL-   80 (290)
T ss_dssp             --CCEESSCSSE-EEEETTSCEEEEEECT-T----EEEEEEECSSSCEEEECSSEEEETTCCGGGCEEEEEEESS--SC-
T ss_pred             CCCCEEeCCCCe-EEEcCCCcEEEEECCC-C----cEEEecCCcceeeecCCCceEEEeccCHHhCeEEEEEeeC--Cc-
Confidence            346777766666 8899999999999644 3    89999988655  111448999999999999999999998  33 


Q ss_pred             EEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEe-eCCEEeeeCCeeEEEEcccCcCCCeeEEEEEe
Q psy14542         86 QMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWL-KDGLVLRRNSDEVLVLDRVQREDAGMYQCHIE  164 (371)
Q Consensus        86 ~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~-~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~  164 (371)
                      ...+.|.|...+..+...+...+.+|+.+.|.|.+.+ +..+.+.|+ +++..+....                      
T Consensus        81 ~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~----------------------  137 (290)
T 2o26_X           81 TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDL----------------------  137 (290)
T ss_dssp             EEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTC----------------------
T ss_pred             cEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCC----------------------
Confidence            7778888874333333344445589999999999986 323799995 5776654321                      


Q ss_pred             CCceeEeccceEEEEEeecCCccc-eeEEEeeccccceeee-eeccceeeeecchhccccceeeeeeeeeeeecCCeEEE
Q psy14542        165 DGKYHMLSSGELIIHQVDESDRYR-SYQCRGVNKLTGASLL-SVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVIL  242 (371)
Q Consensus       165 ~~~~~~~~~~~l~i~~~~~~d~~g-~y~C~~~~~~~~~~~~-~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l  242 (371)
                        ++....+..|.|.++..+| .| .|+|.+.|. .+.... ..   .+.|.... ..+|.+...+.... +..|+.+.|
T Consensus       138 --~~~~~~~~~L~i~~v~~~d-~G~~Y~C~a~n~-~~~~~s~~~---~l~V~~~~-~~~P~i~~~~~~~~-v~~G~~v~l  208 (290)
T 2o26_X          138 --TFVPNPKAGITIKNVKRAY-HRLCVRCAAQRD-GTWLHSDKF---TLKVREAI-KAIPVVSVPETSHL-LKKGDTFTV  208 (290)
T ss_dssp             --EEEEETTTEEEEESCCGGG-TTCEEEEEEEET-TEEEECCCE---EEEEECCC-CSCCEEECSCSBCC-CCTTCCEEE
T ss_pred             --ceeeCCCCCEEEecccHHH-CCCEEEEEEEEC-CceEEeEEE---EEEEEeCC-CCCCccccCCCcce-EecCCcEEE
Confidence              3333344689999999999 99 999999997 444222 23   55554211 14666666655555 999999999


Q ss_pred             EEEeecCCCCc-eEEEeCCccc----ccCCc-------eEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEec
Q psy14542        243 PCSAQGNPLPT-IKWYKQDSPV----EESDR-------IQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAH  310 (371)
Q Consensus       243 ~C~~~~~p~~~-v~W~~~~~~~----~~~~~-------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  310 (371)
                      .|.+.|.|.+. +.|++++..+    .....       .....+.|.|.++..+|+|.|+|.|.|..|.....+.|.|.+
T Consensus       209 ~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  288 (290)
T 2o26_X          209 VCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVE  288 (290)
T ss_dssp             EEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred             EEEEecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEe
Confidence            99999999997 9999999873    32222       113356899999999999999999999999999999998887


Q ss_pred             Cc
Q psy14542        311 GK  312 (371)
Q Consensus       311 ~p  312 (371)
                      +|
T Consensus       289 ~P  290 (290)
T 2o26_X          289 KG  290 (290)
T ss_dssp             --
T ss_pred             CC
Confidence            65

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=100.00  E-value=2e-34  Score=245.15  Aligned_cols=268  Identities=16%  Similarity=0.210  Sum_probs=190.4

Q ss_pred             eCCCcEEEeccCcEEEEEEecCCCCC----CeeEEEeCCEEE-------------eeC--------------CeeEEEEc
Q psy14542         16 SPSGQVVVDVGHRIELHCRVSPKRLS----SAKAWLKDGLVL-------------RRN--------------SDEVLVLD   64 (371)
Q Consensus        16 ~p~~~~~~~~G~~v~l~C~~~~~~~~----~~~~W~~~~~~~-------------~~~--------------~~~~l~i~   64 (371)
                      .|.. +.+..|++++|.|.+....+.    ..+.|+|++...             ...              .+.+|.|.
T Consensus         6 ~P~~-v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~   84 (313)
T 4fqp_A            6 APTQ-VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMF   84 (313)
T ss_dssp             CCSE-ECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEEC
T ss_pred             CCCE-EEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEEC
Confidence            3444 788899999999976543222    248999976421             100              34679999


Q ss_pred             cCCcCCCeEEEEEEEc-CCCCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecC-CCCCceEEEeeCCEEeeeCC
Q psy14542         65 RVQREDAGMYQCHVSA-DDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSP-KRLSSAKAWLKDGLVLRRNS  142 (371)
Q Consensus        65 ~~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~  142 (371)
                      +++.+|+|.|+|.+.+ ..+.....+.|.+...+..........+..|+.+.+.|.+.+ .|. +.+.|++++..+....
T Consensus        85 ~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~-~~i~W~~~~~~~~~~~  163 (313)
T 4fqp_A           85 GLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPP-AQITWHSDLGGMPNTS  163 (313)
T ss_dssp             SCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSC-CEEEEEETTCCEEEEE
T ss_pred             cCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCC-cEEEeecCCccccccc
Confidence            9999999999999864 344556677777773333333333333467888999998864 455 8999999988765432


Q ss_pred             eeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhcccc
Q psy14542        143 DEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSA  222 (371)
Q Consensus       143 ~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p  222 (371)
                      ..       .....         +.+..  .+.|.|.....+| +|.|+|.+.|. .+...... ...|.|.     .+|
T Consensus       164 ~~-------~~~~~---------~~~~~--~s~l~i~~~~~~d-~g~Y~C~a~n~-~~~~~~~~-~~~l~V~-----~~P  217 (313)
T 4fqp_A          164 QV-------PGFLS---------GTVTV--TSLWILVPSSQVD-GKNVTCKVEHE-SFEKPQLL-TVNLTVY-----YPP  217 (313)
T ss_dssp             EE-------ECSST---------TCEEE--EEEEEECCCGGGT-TCEEEEEEECT-TSSSCEEE-EEECCBC-----EEE
T ss_pred             ee-------eeecc---------ccccc--ceeeeeccccccc-CeeEEEEEEcc-CcCcccee-eeecccc-----cCC
Confidence            11       01111         12222  1568888888999 99999999987 44332222 1155565     667


Q ss_pred             ceeeeeeeeeeeecCCeEEEEEEeecCCCC-ceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCce
Q psy14542        223 AKMFEKHRILNVKKDESVILPCSAQGNPLP-TIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDK  301 (371)
Q Consensus       223 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  301 (371)
                      .+.........+..|+.++|.|.+.|+|.| .|.|++++..+...  ....+++|.|.++..+|+|.|+|.|.|..|...
T Consensus       218 ~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~--~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  295 (313)
T 4fqp_A          218 EVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPF--AVAQGAQLLIRPVDKPINTTLICNVTNALGARQ  295 (313)
T ss_dssp             EEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTT--EEEETTEEEECCCSSCCEEEEEEEEECSSCEEE
T ss_pred             ccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCc--eEEeCCEEEECcCChhhCEEEEEEEEeCCCcEE
Confidence            766554444436778999999999999998 59999999988654  334567899999999999999999999999999


Q ss_pred             eEEEEEEecCcc
Q psy14542        302 MQLFIQYAHGKY  313 (371)
Q Consensus       302 ~~~~l~v~~~p~  313 (371)
                      .++.|.|.++|+
T Consensus       296 ~~~~l~V~~~PP  307 (313)
T 4fqp_A          296 AELTVQVKEGPP  307 (313)
T ss_dssp             EEEEEEEECCC-
T ss_pred             EEEEEEEEeCCC
Confidence            999999998877

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=1.9e-34  Score=252.38  Aligned_cols=253  Identities=20%  Similarity=0.321  Sum_probs=201.3

Q ss_pred             CCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee---------CCeeEEEEccCCcCCCeEEEEEEEcCCCCeEE-
Q psy14542         18 SGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR---------NSDEVLVLDRVQREDAGMYQCHVSADDDSAQM-   87 (371)
Q Consensus        18 ~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~---------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-   87 (371)
                      .....+.+|+.++|.|....+.|.+.+.|++++..+..         ...+.|.|.+++.+|+|.|+|.+.+..+.... 
T Consensus       108 ~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~  187 (382)
T 1cs6_A          108 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS  187 (382)
T ss_dssp             CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred             CCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCceEEEEEeeCcccCeeEEEEEEEccccccce
Confidence            33478999999999996566678889999998754321         14468999999999999999999987654322 


Q ss_pred             ----EEEEEEec-----ceeeEecC-C-ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCC
Q psy14542         88 ----SAQVILGG-----ELVEIASS-N-QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDA  156 (371)
Q Consensus        88 ----~~~l~v~~-----~~~~~~~~-~-~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~  156 (371)
                          .+.|.+..     .+|.+... + ...+.+|+.++|.|.+.+.+. +.+.|++++..+....              
T Consensus       188 ~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~-~~i~W~~~~~~~~~~~--------------  252 (382)
T 1cs6_A          188 VFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPV-PQIKWRKLDGSQTSKW--------------  252 (382)
T ss_dssp             EECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESC-CEEEEEECCSCCSCCC--------------
T ss_pred             eEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCC-CEEEEEECCcccccEE--------------
Confidence                23444431     23444332 2 334489999999999988877 8999999876543210              


Q ss_pred             eeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeec
Q psy14542        157 GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKK  236 (371)
Q Consensus       157 g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~  236 (371)
                                   ......|.|.++..+| .|.|+|.+.|. .|......   .+.|.     .+|.+...+.... +..
T Consensus       253 -------------~~~~~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V~-----~~p~~~~~~~~~~-~~~  308 (382)
T 1cs6_A          253 -------------LSSEPLLHIQNVDFED-EGTYECEAENI-KGRDTYQG---RIIIH-----AQPDWLDVITDTE-ADI  308 (382)
T ss_dssp             -------------SBSSSEEEECSCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEE-----EEEEEEECCCCEE-EET
T ss_pred             -------------ecCCcEEEEccCChhh-CEEEEEEEEcC-CCeEEEEE---EEEEe-----cCCCcccCCCccE-EcC
Confidence                         0112679999999999 99999999998 77766666   78887     6677776666666 899


Q ss_pred             CCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542        237 DESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA  309 (371)
Q Consensus       237 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  309 (371)
                      |+.+.|.|.+.|.|.+.+.|+++|..+....++...++.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       309 g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          309 GSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             TCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEECCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence            9999999999999999999999999998888888888899999999999999999999999999999999885

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=3.1e-34  Score=252.91  Aligned_cols=272  Identities=21%  Similarity=0.295  Sum_probs=207.2

Q ss_pred             eeEEecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCcCC-CeEE
Q psy14542          3 LFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQRED-AGMY   74 (371)
Q Consensus         3 ~~~~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d-~G~Y   74 (371)
                      +.|.|...+.+...+..+..+.+|++++|.|.+..+.|.+.+.|++++......       .+++|.|.+++.+| +|.|
T Consensus       108 ~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~~G~Y  187 (404)
T 3p3y_A          108 IRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDY  187 (404)
T ss_dssp             EEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECTTSCEEESSCCSGGGSSCB
T ss_pred             EEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcCCCcEEEEeeeeccCCcce
Confidence            345555544443333333789999999999966577888999999986432211       45689999999999 5999


Q ss_pred             EEEEEcCCCCeEE---EEEEEEecc------eeeEecCC----ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeC
Q psy14542         75 QCHVSADDDSAQM---SAQVILGGE------LVEIASSN----QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN  141 (371)
Q Consensus        75 ~C~~~~~~~~~~~---~~~l~v~~~------~~~~~~~~----~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~  141 (371)
                      +|.+.+..+....   .+.|.|...      +|.+....    ...+.+|+.+.|.|.+.+.+. +.+.|++++..+...
T Consensus       188 ~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~-~~v~W~~~~~~~~~~  266 (404)
T 3p3y_A          188 SCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPT-PDIAWYKKGGDLPSD  266 (404)
T ss_dssp             EEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSC-CEEEEEETTBCCCTT
T ss_pred             EEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCC-CcEEEEECCEECCCC
Confidence            9999987765422   244555421      22222211    223488999999999998877 799999999877544


Q ss_pred             CeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccc
Q psy14542        142 SDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLS  221 (371)
Q Consensus       142 ~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~  221 (371)
                      ..                        .....+..|.|.++..+| .|.|+|.+.|. .|......   .|.|.     .+
T Consensus       267 ~~------------------------~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V~-----~~  312 (404)
T 3p3y_A          267 KA------------------------KFENFNKALRITNVSEED-SGEYFCLASNK-MGSIRHTI---SVRVK-----AA  312 (404)
T ss_dssp             TE------------------------EEEGGGTEEEESSCCGGG-CEEEEEEEECS-SCEEEEEE---EEEEE-----EE
T ss_pred             cc------------------------cccccCceEEEccCCHhH-CEEEEEEEEeC-CCcEEEEE---EEEEe-----CC
Confidence            21                        111123689999999999 99999999998 77766666   78887     67


Q ss_pred             cceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCC---ceEEecceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542        222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD---RIQRIGSSLSISHVEESDSGVWNCVANNSEG  298 (371)
Q Consensus       222 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  298 (371)
                      |.+...+.... +..|+.+.|.|.+.|+|.+.+.|+++|..+....   +....++.|.|.++..+|+|.|+|.|.|..|
T Consensus       313 p~~~~~~~~~~-v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G  391 (404)
T 3p3y_A          313 PYWLDEPKNLI-LAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHG  391 (404)
T ss_dssp             EEEEECCCCEE-ECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEETTE
T ss_pred             CeeeccCCcce-eecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEEeCCC
Confidence            77777766666 8999999999999999999999999999886553   3445677999999999999999999999999


Q ss_pred             CceeEEEEEEec
Q psy14542        299 QDKMQLFIQYAH  310 (371)
Q Consensus       299 ~~~~~~~l~v~~  310 (371)
                      ....++.|.|.+
T Consensus       392 ~~~~~~~l~V~d  403 (404)
T 3p3y_A          392 YLLANAFVSVLD  403 (404)
T ss_dssp             EEEEEEEEEEC-
T ss_pred             cEEEEEEEEEEe
Confidence            999999988864

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=100.00  E-value=2.2e-35  Score=253.56  Aligned_cols=272  Identities=20%  Similarity=0.272  Sum_probs=135.0

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHVSADDDSA   85 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   85 (371)
                      |.+.. |.. ..+.+|++++|.|.+....|.+.+.|+|+|..+...     ...+|.|.+++.+|+|.|+|.+.+. +..
T Consensus        10 p~~~~-~~~-~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~   86 (334)
T 1ry7_B           10 PEPGQ-QEQ-LVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLT-QRV   86 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCC-cCc-EEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEeccceEEEeecccccCEEEEEEEEeC-CeE
Confidence            33433 555 789999999999976655567899999999877654     4678999999999999999999988 666


Q ss_pred             EEEEEEEEecce---------------------eeEecCC-----ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEee
Q psy14542         86 QMSAQVILGGEL---------------------VEIASSN-----QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR  139 (371)
Q Consensus        86 ~~~~~l~v~~~~---------------------~~~~~~~-----~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~  139 (371)
                      ...+.|.|...+                     |.+....     ...+.+|+.+.|.|.+.+.+. +.+.|++++..+.
T Consensus        87 ~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~-~~v~W~~~~~~~~  165 (334)
T 1ry7_B           87 LCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPT-PSISWLKNGREFR  165 (334)
T ss_dssp             --------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSC-CEEECCBTTBCCC
T ss_pred             EEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCC-CeEEEEECCEECc
Confidence            677777776321                     2222111     133478999999999998877 8999999998765


Q ss_pred             eCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhc
Q psy14542        140 RNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRL  219 (371)
Q Consensus       140 ~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~  219 (371)
                      ......                    ..........|.|.+++.+| .|.|+|.+.|. .+......   .+.|..... 
T Consensus       166 ~~~~~~--------------------~~~~~~~~~~L~i~~v~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V~~~~~-  219 (334)
T 1ry7_B          166 GEHRIG--------------------GIKLRHQQWSLVMESVVPSD-RGNYTCVVENK-FGSIRQTY---TLDVLERSP-  219 (334)
T ss_dssp             TTSSTT--------------------CCCCCTTTTEEEECSCCGGG-CCCEEEEEEET-TEEEEEEE---EEEEECCCC-
T ss_pred             cccccc--------------------ceecccceEEEEECCCCccc-CEEEEEEEEeC-CCCEEEEE---EEEEecCCC-
Confidence            442110                    00001123579999999999 99999999998 66666655   777764321 


Q ss_pred             cccceee-eeeeeeeeecCCeEEEEEEeecCCCCceEEEe----CCcccccCCce--E--E---------ecceEEEecc
Q psy14542        220 LSAAKMF-EKHRILNVKKDESVILPCSAQGNPLPTIKWYK----QDSPVEESDRI--Q--R---------IGSSLSISHV  281 (371)
Q Consensus       220 ~~p~~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~----~~~~~~~~~~~--~--~---------~~~~l~i~~~  281 (371)
                      .+|.+.. .+.... +..|+.+.|.|.+.|.|.+.+.|++    +|..+....+.  .  .         ..+.|.|.++
T Consensus       220 ~~p~~~~~~~~~~~-~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v  298 (334)
T 1ry7_B          220 HRPILQAGLPANQT-AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNV  298 (334)
T ss_dssp             SSCBCCTTCSCCEE-EESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSC
T ss_pred             CCCceEecCCCceE-EeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccC
Confidence            1233332 233444 8899999999999999999999999    66666543321  1  0         1137999999


Q ss_pred             CCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542        282 EESDSGVWNCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       282 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      ..+|+|.|+|.|.|..|....++.|.|...|.
T Consensus       299 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~  330 (334)
T 1ry7_B          299 TFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEE  330 (334)
T ss_dssp             CTTSCSEEEEEEEESSCCEEEEEEEEEECSCC
T ss_pred             CHHHCEEEEEEEeCCCCeEEEEEEEEEEECCC
Confidence            99999999999999999999999999987665

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=100.00  E-value=7.6e-36  Score=284.46  Aligned_cols=323  Identities=21%  Similarity=0.326  Sum_probs=69.0

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCC-CCCCeeEEEeCCEEEeeC-----------------CeeEEEEccCCcC
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRN-----------------SDEVLVLDRVQRE   69 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~~~~~~~~-----------------~~~~l~i~~~~~~   69 (371)
                      ...+.+.+.|.....+.+|++++|.|.+... .+...+.|++++..+...                 ....|.|.+++.+
T Consensus       221 ~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  300 (772)
T 3v2a_R          221 YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS  300 (772)
T ss_dssp             CCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCST
T ss_pred             CccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcC
Confidence            3466778888776799999999999976533 456789999988764321                 3457999999999


Q ss_pred             CCeEEEEEEEcCCCCeEEEEEEEEecceeeEecC----CceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCC---
Q psy14542         70 DAGMYQCHVSADDDSAQMSAQVILGGELVEIASS----NQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS---  142 (371)
Q Consensus        70 d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~----~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~---  142 (371)
                      |+|.|+|.+.+..+.....+.|.|. .+|.+...    ....+.+|+.++|.|.+.+.+. +.+.|++++..+....   
T Consensus       301 d~G~Y~C~~~~~~~~~~~~~~l~V~-~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~-~~v~W~~~g~~l~~~~~~~  378 (772)
T 3v2a_R          301 DQGLYTCAASSGLMTKKNSTFVRVH-EKPFVAFGSGMESLVEATVGERVRIPAKYLGYPP-PEIKWYKNGIPLESNHTIK  378 (772)
T ss_dssp             TCSEEEEEEECSSCEEEEEEEEEEE-CCCC--------------------------------------------------
T ss_pred             CCeEEEEEEEcCCcceeEEEEEEEe-CCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCC-CeEEEEECCEeCCCCceEc
Confidence            9999999999988877888889988 44444322    2334488999999999998777 8999999998776532   


Q ss_pred             -eeEEEEcccCcCCCeeEEEEEeCCceeE---------------------------------------------------
Q psy14542        143 -DEVLVLDRVQREDAGMYQCHIEDGKYHM---------------------------------------------------  170 (371)
Q Consensus       143 -~~~~~~~~~~~~~~g~y~~~~~~~~~~~---------------------------------------------------  170 (371)
                       ...+.+.++..+|.|.|+|.+.+.....                                                   
T Consensus       379 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W  458 (772)
T 3v2a_R          379 AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHW  458 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccccCCCCcEEEEeEeccCCCCcEEEE
Confidence             2577888899999999997665321100                                                   


Q ss_pred             ec-----------------------------------------------------cceEEEEEeecCCccceeEEEeecc
Q psy14542        171 LS-----------------------------------------------------SGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       171 ~~-----------------------------------------------------~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      ..                                                     ...|.|.++  +| .|.|+|.+.|.
T Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d-~G~Y~C~a~N~  535 (772)
T 3v2a_R          459 YWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NV-SALYKCEAVNK  535 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--cc-CeEEEEEEEcc
Confidence            00                                                     012223332  57 89999999998


Q ss_pred             ccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceE-------
Q psy14542        198 LTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ-------  270 (371)
Q Consensus       198 ~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-------  270 (371)
                       .|......   .+.|.     .+|.+...+. .. +.+|+.+.|.|.+.+.|.+.+.|++++..+.......       
T Consensus       536 -~g~~~~~~---~l~V~-----~~p~i~~~p~-~~-~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~  604 (772)
T 3v2a_R          536 -VGRGERVI---SFHVT-----RGPEITLQPD-MQ-PTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCK  604 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -ccccceeE---EEEEE-----CCceeeccCC-cc-cccCCceEEEEeccCCCCCCcEEEEcCCcccccccCcccccccc
Confidence             77666555   77777     4565554443 23 7889999999999999999999999887654321110       


Q ss_pred             -----------------EecceEEEeccCCCCCeEEEEEEEcCCCCce--eEEEEEE--ecCcccccccceEEEEeeeec
Q psy14542        271 -----------------RIGSSLSISHVEESDSGVWNCVANNSEGQDK--MQLFIQY--AHGKYHMLSSGELIIHQVDEK  329 (371)
Q Consensus       271 -----------------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~v--~~~p~~~~~~~~~~~~~~~~~  329 (371)
                                       .....|.|.++..+|+|.|+|.|.|..|...  ....|.|  ..+|.         +.  .  
T Consensus       605 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~---------~~--~--  671 (772)
T 3v2a_R          605 NLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPT---------IT--G--  671 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCCE---------ee--c--
Confidence                             0112499999999999999999999665432  2334444  45565         33  1  


Q ss_pred             cccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        330 NKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                                  .+....+.+|+.++|.|.+.|.|+|.|+|+
T Consensus       672 ------------~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~  701 (772)
T 3v2a_R          672 ------------NLENQTTSIGESIEVSCTASGNPPPQIMWF  701 (772)
T ss_dssp             ------------------------------------------
T ss_pred             ------------CCCceEEeCCCCEEEEEEeCccCCCeEEEE
Confidence                        112236889999999999999999999996

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=100.00  E-value=3.4e-33  Score=231.47  Aligned_cols=242  Identities=19%  Similarity=0.301  Sum_probs=185.8

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCC-eeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCeEEE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSS-AKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMS   88 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~   88 (371)
                      +|.+.+.|.. ..+.+|+.+.|.|.+ .+.|.+ .+.|+++|..+.. ....|.|.+++.+|+|.|+|.+.+..+..  .
T Consensus         1 kP~i~~~p~~-~~v~~G~~v~l~C~~-~~~~~~~~~~W~~~g~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~s~--~   75 (262)
T 3rjd_A            1 KAVITLQPPW-VSVFQEETVTLHCEV-LHLPGSSSTQWFLNGTATQT-STPSYRITSASVNDSGEYRCQRGLSGRSD--P   75 (262)
T ss_dssp             CCEEEESSCC-SEEETTCCEEEEEEC-SSCCCTTCEEEEETTEECSC-CSSEEEESSCCGGGCEEEEEEESSSCCCC--C
T ss_pred             CCeEecCCCc-EEeeCCCeEEEEEEC-CCCCCCceEEEEECCEEeec-cCCeEEEecCCcccCeEEEEEEecCCccc--c
Confidence            4678888888 889999999999965 455555 8999999998865 57789999999999999999998765543  5


Q ss_pred             EEEEEecceeeEecCCceeeecCCcEEEEEEe-cCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCc
Q psy14542         89 AQVILGGELVEIASSNQVVVDVGHRIELHCRV-SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGK  167 (371)
Q Consensus        89 ~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~  167 (371)
                      +.|.|. .++.........+.+|+.+.|.|.+ .+.+. +.+.|++++..+....                         
T Consensus        76 ~~l~v~-~~~~~~~~~~~~~~~g~~v~l~C~~~~~~p~-~~v~W~~~g~~~~~~~-------------------------  128 (262)
T 3rjd_A           76 IQLEIH-RGWLLLQVSSRVFTEGEPLALRCHAWKDKLV-YNVLYYRNGKAFKFFH-------------------------  128 (262)
T ss_dssp             EEEEEE-CSSEEEEESCSEEETTSCEEEEEEEGGGCCC-EEEEEEETTEEEEEEE-------------------------
T ss_pred             EEEEEe-ccceEecCCCeEEecCCeEEEEEEccCCCCC-ceEEEEECCccccccC-------------------------
Confidence            666666 3333333444455899999999999 55555 8999999998775321                         


Q ss_pred             eeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEee
Q psy14542        168 YHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQ  247 (371)
Q Consensus       168 ~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~  247 (371)
                          .+..|.|.+++.+| .|.|+|.+.+. .+......   .+.|...  ..+|.+...+ ... +..|+.+.|.|.+.
T Consensus       129 ----~~~~l~i~~~~~~d-~G~Y~C~~~n~-~~~~~~~~---~l~V~~~--~~~p~~~~~~-~~~-~~~g~~~~l~C~~~  195 (262)
T 3rjd_A          129 ----WNSNLTILKTNISH-NGTYHCSGMGK-HRYTSAGI---SVTVKEL--FPAPVLNASV-TSP-LLEGNLVTLSCETK  195 (262)
T ss_dssp             ----ECCCEEESSCCGGG-CEEEEEEEESS-SEEEEECE---EEEEECS--SCCCEEEESS-CSS-EETTCCEEEEEECC
T ss_pred             ----CCCeEEEEECChhh-CEEEEEEEeCC-CCccccce---EEEeccC--CCCCeEeecC-cee-ecCCCeEEEEeEcc
Confidence                12578999999999 99999999998 55555555   6666632  1234444443 334 88999999999999


Q ss_pred             cCCC-Cc----eEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        248 GNPL-PT----IKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       248 ~~p~-~~----v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      +.|. +.    +.|++++..+...    ...+.|.|.++..+|+|.|+|.|.|..|..
T Consensus       196 ~~p~~p~~~~~~~w~~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~  249 (262)
T 3rjd_A          196 LLLQRPGLQLYFSFYMGSKTLRGR----NTSSEYQILTARREDSGLYWCEAATEDGNV  249 (262)
T ss_dssp             CCCC-----EEEEEEETTEEEEEE----ESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred             cCCCCCCccEEEEEEeCCcEeccc----CCCceEEEEEechhhCeEEEEEEEcccCce
Confidence            9876 43    7899998876532    245689999999999999999999999974

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=100.00  E-value=4.7e-35  Score=249.41  Aligned_cols=263  Identities=18%  Similarity=0.260  Sum_probs=195.4

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV   91 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   91 (371)
                      +.+.+|+.+.|.|.+....+.+.+.|+|++..+...         ...+|.|.+++.+|+|.|+|.+.+..+.....+.+
T Consensus        15 ~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~v   94 (315)
T 1itb_B           15 LVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISA   94 (315)
T ss_dssp             CEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSCCCCEECCC
T ss_pred             EEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCceEEEEEEEE
Confidence            789999999999965544447899999998543211         45589999999999999999999988877777777


Q ss_pred             EEecceeeEecCC----ceeeecCCcEEEEEEe------cCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEE
Q psy14542         92 ILGGELVEIASSN----QVVVDVGHRIELHCRV------SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC  161 (371)
Q Consensus        92 ~v~~~~~~~~~~~----~~~~~~g~~v~l~C~~------~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~  161 (371)
                      .+...+|.+...+    ...+..|+.+.|.|.+      .+.|. +.+.|++++..+.....                  
T Consensus        95 ~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~-~~i~W~k~~~~l~~~~~------------------  155 (315)
T 1itb_B           95 KFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNEL-PKLQWYKDCKPLLLDNI------------------  155 (315)
T ss_dssp             EEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCC-CCCEEEETTEECCCCSS------------------
T ss_pred             EEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCC-CEEEEEECCEECCCccc------------------
Confidence            7654444443222    2334789999999998      66676 89999999988764321                  


Q ss_pred             EEeCCceeEeccceEEEEEeecCCccceeEEEee-ccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeE
Q psy14542        162 HIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGV-NKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESV  240 (371)
Q Consensus       162 ~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~-~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~  240 (371)
                           ++ ...+..|.|.+++.+| .|.|+|.+. +. .|..........+.+.......+|.+...+.....+..|+.+
T Consensus       156 -----~~-~~~~~~L~i~~v~~~d-~G~Y~C~a~~n~-~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v  227 (315)
T 1itb_B          156 -----HF-SGVKDRLIVMNVAEKH-RGNYTCHASYTY-LGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQI  227 (315)
T ss_dssp             -----SE-EEETTEEEESSCCGGG-CEEEEEEEEEEE-TTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCE
T ss_pred             -----eE-eecCceEEEEeceehh-CcEEEEEEEcCC-CCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcE
Confidence                 11 1223689999999999 999999999 55 565422111113433322223566666555433238999999


Q ss_pred             EEEEEeecCCCCceEEEeCCcccccCCceE----------------EecceEEEeccCCCC-CeEEEEEEEcCCCCceeE
Q psy14542        241 ILPCSAQGNPLPTIKWYKQDSPVEESDRIQ----------------RIGSSLSISHVEESD-SGVWNCVANNSEGQDKMQ  303 (371)
Q Consensus       241 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~----------------~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~~~  303 (371)
                      .|.|.+.|.|.|.+.|+++|..+.......                ...+.|.|.++..+| +|.|+|.|.|..|....+
T Consensus       228 ~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~  307 (315)
T 1itb_B          228 QLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAY  307 (315)
T ss_dssp             EEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEE
T ss_pred             EEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEE
Confidence            999999999999999999999887654321                122489999999999 999999999999999999


Q ss_pred             EEEEEec
Q psy14542        304 LFIQYAH  310 (371)
Q Consensus       304 ~~l~v~~  310 (371)
                      +.|.|..
T Consensus       308 ~~l~v~~  314 (315)
T 1itb_B          308 IQLIYPV  314 (315)
T ss_dssp             EEEECCC
T ss_pred             EEEEecC
Confidence            9988754

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=100.00  E-value=2.5e-33  Score=238.37  Aligned_cols=259  Identities=16%  Similarity=0.231  Sum_probs=188.7

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV   91 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   91 (371)
                      +.+.+|+.+.|.|....+.|.+.+.|+|++..+...         ...+|.|.+++.+|+|.|+|.+.+..|... ...|
T Consensus        11 ~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~l   89 (312)
T 2y23_A           11 VNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYLI   89 (312)
T ss_dssp             EEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EEEE
T ss_pred             EEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EEEE
Confidence            678899999999977767888999999999887633         346899999999999999999998877544 5555


Q ss_pred             EEecc-----------eeeEecCC--ceeeecCCcEEEEEEec-CCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCe
Q psy14542         92 ILGGE-----------LVEIASSN--QVVVDVGHRIELHCRVS-PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAG  157 (371)
Q Consensus        92 ~v~~~-----------~~~~~~~~--~~~~~~g~~v~l~C~~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g  157 (371)
                      .|...           +|.+...+  ...+.+|+.+.|.|.+. +.+. +.+.|++++..+.....+.+.....      
T Consensus        90 ~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~-~~v~W~~~~~~i~~~~~~~~~~~~~------  162 (312)
T 2y23_A           90 DEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGN-AKVNYIFNEKEIFEGPKYKMHIDRN------  162 (312)
T ss_dssp             CHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSS-CEEEEEETTEEECSSSSCEEEEETT------
T ss_pred             EEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCC-CEEEEEECCEECeeCCcEEEEEccC------
Confidence            55410           33332222  33448999999999998 6666 9999999999887654322211100      


Q ss_pred             eEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecc----------------hhccc
Q psy14542        158 MYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTEN----------------KRLLS  221 (371)
Q Consensus       158 ~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~----------------~~~~~  221 (371)
                              .     ....|.|.+++.+| .|.|+|.+.+. ......     .+.+...                ....+
T Consensus       163 --------~-----~~~~L~i~~~~~~d-~G~Y~C~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (312)
T 2y23_A          163 --------T-----GIIEMFMEKLQDED-EGTYTFQLQDG-KATNHS-----TVVLVGDVFKKLQKEAEFQRQEWIRKQG  222 (312)
T ss_dssp             --------T-----TEEEEEESCCCGGG-CEEEEEEEESS-SCEEEE-----EEEECTHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             --------C-----CEEEEEEccCCccc-CEeEEEEEEeC-CceEEE-----EEEEcchhhhhhcccccccccchhhccC
Confidence                    0     01359999999999 99999999765 332222     2222100                00123


Q ss_pred             cceeeeeeeeeeeecCCeEEEEEEeecCCCC-ceEEEeCCcccccCCceEEec--ceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542        222 AAKMFEKHRILNVKKDESVILPCSAQGNPLP-TIKWYKQDSPVEESDRIQRIG--SSLSISHVEESDSGVWNCVANNSEG  298 (371)
Q Consensus       222 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~a~n~~g  298 (371)
                      |.+..... .. +..|+.+.|.|.+.+.|.+ .+.|++++..+..+.++...+  ..|.|.++..+|+|.|+|.|.|..|
T Consensus       223 p~~~~~~~-~~-v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G  300 (312)
T 2y23_A          223 PHFVEYLS-WE-VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRG  300 (312)
T ss_dssp             SEEEEEEE-EE-EETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC----CEEEEEECSCSGGGCEEEEEEEESTTC
T ss_pred             Cceeecce-EE-EeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCC
Confidence            44443332 44 8999999999999999988 999999999887665555333  5899999999999999999999999


Q ss_pred             CceeEEEEEEe
Q psy14542        299 QDKMQLFIQYA  309 (371)
Q Consensus       299 ~~~~~~~l~v~  309 (371)
                      ....++.|.+.
T Consensus       301 ~~~~~~~l~i~  311 (312)
T 2y23_A          301 KDKSRLKLVDE  311 (312)
T ss_dssp             CEEEEEEECSC
T ss_pred             ceeeeeEEEec
Confidence            99999888764

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=100.00  E-value=8e-35  Score=247.14  Aligned_cols=263  Identities=16%  Similarity=0.166  Sum_probs=186.5

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee---------------C------------CeeEEEEccCCcCCCeE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR---------------N------------SDEVLVLDRVQREDAGM   73 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~---------------~------------~~~~l~i~~~~~~d~G~   73 (371)
                      +.+.+|++++|.|.+..+.+...+.|+|++.....               .            .+.+|.|.+++.+|+|.
T Consensus         9 vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~   88 (308)
T 4fom_A            9 VTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSGK   88 (308)
T ss_dssp             CEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCEE
T ss_pred             eEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCEE
Confidence            68899999999997665666667999985321100               0            34679999999999999


Q ss_pred             EEEEEEcCC-CCeEEEEEEEEecceee-EecCCceee-ecCCcEEEEEEec-CCCCCceEEEeeCCEEeeeCCeeEEEEc
Q psy14542         74 YQCHVSADD-DSAQMSAQVILGGELVE-IASSNQVVV-DVGHRIELHCRVS-PKRLSSAKAWLKDGLVLRRNSDEVLVLD  149 (371)
Q Consensus        74 Y~C~~~~~~-~~~~~~~~l~v~~~~~~-~~~~~~~~~-~~g~~v~l~C~~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~  149 (371)
                      |+|.+.+.. +.....+.+.+...+.. ....+...+ ..|+.+.|.|.+. +.|. +.++|++++..+.......    
T Consensus        89 Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~-~~i~W~~~~~~~~~~~~~~----  163 (308)
T 4fom_A           89 YICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPV-AHIDWEGDLGEMESTTTSF----  163 (308)
T ss_dssp             EEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSC-CEEEECCCSSBCCEEEEEC----
T ss_pred             EEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCC-ceEEEEECCccccccccee----
Confidence            999998753 44456666666532222 222333333 6789999999874 5565 8999999987765432100    


Q ss_pred             ccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeee
Q psy14542        150 RVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKH  229 (371)
Q Consensus       150 ~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~  229 (371)
                           .         ++..  ...+.|.|..+...| .|.|+|.+.|. .+....+. ...|.|.     .+|.+...+.
T Consensus       164 -----~---------~~~~--~~~s~l~i~~~~~~d-~g~Y~C~a~n~-~~~~~~~~-~~~l~V~-----~~P~~~~~~~  219 (308)
T 4fom_A          164 -----P---------NETA--TIISQYKLFPTRFAR-GRRITCVVKHP-ALEKDIRY-SFILDIQ-----YAPEVSVTGY  219 (308)
T ss_dssp             -----T---------TSCE--EEEEEEEECCCGGGT-TCEEEEEEECT-TCSSCEEE-EEECCCC-----EEEEECCBCC
T ss_pred             -----e---------eecc--cccccceEEeeeecC-CccEEEEEEcc-CCCCceEE-eEEEEEe-----cCCeeEEccc
Confidence                 0         1111  112578999999999 99999999987 44333222 1155565     5666655544


Q ss_pred             eeeeeecCCeEEEEEEeecCCCC-ceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        230 RILNVKKDESVILPCSAQGNPLP-TIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       230 ~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      ....+..|+.+.|.|.+.|.|.| .+.|++++..+..... ...+..|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus       220 ~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~-~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V  298 (308)
T 4fom_A          220 DGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLL-ASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYI  298 (308)
T ss_dssp             CSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSCB-CSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCE
T ss_pred             ceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcEE-EcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEE
Confidence            44337788999999999999988 6999999988765432 223345667899999999999999999999999999999


Q ss_pred             ecCcc
Q psy14542        309 AHGKY  313 (371)
Q Consensus       309 ~~~p~  313 (371)
                      .++|.
T Consensus       299 ~~~P~  303 (308)
T 4fom_A          299 SDPPH  303 (308)
T ss_dssp             ECCC-
T ss_pred             EcCCC
Confidence            99987

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=100.00  E-value=2.7e-33  Score=239.79  Aligned_cols=259  Identities=15%  Similarity=0.182  Sum_probs=186.9

Q ss_pred             EEEeccCcEEEEEEecCC--------CCCCeeEEEeCCEEEeeC----CeeEEEEccCCcCCCe-EEEEEEEcCCCCeEE
Q psy14542         21 VVVDVGHRIELHCRVSPK--------RLSSAKAWLKDGLVLRRN----SDEVLVLDRVQREDAG-MYQCHVSADDDSAQM   87 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~--------~~~~~~~W~~~~~~~~~~----~~~~l~i~~~~~~d~G-~Y~C~~~~~~~~~~~   87 (371)
                      +.+.+|+++.|.|.+...        .|.+.+.|+|++..+...    ...+|.|.+++.+|+| .|+|.+.+..|....
T Consensus        39 v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~  118 (329)
T 3oq3_B           39 DMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQ  118 (329)
T ss_dssp             EEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTTEETTEEEESSCCGGGGGCCEEEEEECTTSCEEE
T ss_pred             EEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCceeecceEEEcCCChHhCCCcEEEEEEeCCCceee
Confidence            679999999999965542        366789999998755432    4678999999999999 999999998876544


Q ss_pred             EEEEEEecceeeEecCCce-eeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeC
Q psy14542         88 SAQVILGGELVEIASSNQV-VVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED  165 (371)
Q Consensus        88 ~~~l~v~~~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~  165 (371)
                      ...+.+...++.+...... .+.+|+.+.|.|.+.+.| . +.+.|++++..+....                       
T Consensus       119 ~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~-~~i~W~k~~~~l~~~~-----------------------  174 (329)
T 3oq3_B          119 GIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHY-NNITWYKNNQELIIDG-----------------------  174 (329)
T ss_dssp             EEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCC-CEEEEEETTEECCCSS-----------------------
T ss_pred             EEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCC-ceEEEEECCccCCCCC-----------------------
Confidence            4433444334433222221 226799999999999988 5 8999999999875332                       


Q ss_pred             CceeEeccceEEEEEeecCCccceeEEEeecc--ccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEE
Q psy14542        166 GKYHMLSSGELIIHQVDESDRYRSYQCRGVNK--LTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILP  243 (371)
Q Consensus       166 ~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~--~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~  243 (371)
                      .++... +..|.|.+++.+| .|.|+|.+.|.  ..+..........|.|...+....|.+  .+.... +..|+.+.|.
T Consensus       175 ~~~~~~-~~~L~I~~v~~~D-~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~--~~~~~~-v~~G~~~~l~  249 (329)
T 3oq3_B          175 TKYSQS-GQNLIIHNPELED-SGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI--LDPKIN-VTIGEPANIT  249 (329)
T ss_dssp             SSEEEE-TTEEEECSCCGGG-CEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE--CCSEEE-ECTTSCEEEE
T ss_pred             ceEecC-CCEEEEeecChhh-CEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee--cCCeeE-EecCCCEEEE
Confidence            122222 3789999999999 99999999974  233222211112566663221111222  344445 8999999999


Q ss_pred             EEeecCC---CC-ceEEEeCCccc-ccCCceEE--------ecceEEEeccCCCCCe-EEEEEEEcCCCCceeEEEEEE
Q psy14542        244 CSAQGNP---LP-TIKWYKQDSPV-EESDRIQR--------IGSSLSISHVEESDSG-VWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       244 C~~~~~p---~~-~v~W~~~~~~~-~~~~~~~~--------~~~~l~i~~~~~~d~G-~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      |.+.+.|   .+ .+.|++++..+ ..+.+...        ..+.|.|.++..+|+| .|+|.|.|..|....++.|.|
T Consensus       250 C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          250 CTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             EEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence            9999988   67 88999999874 33333221        3568999999999999 999999999999988888876

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=100.00  E-value=2.6e-33  Score=245.68  Aligned_cols=268  Identities=19%  Similarity=0.281  Sum_probs=197.8

Q ss_pred             eeEEecccceEEEeCCCcEEEeccCcEEEEEEecCCCC--CCeeEEEeCCEEEeeC-----------CeeEEEEccCCcC
Q psy14542          3 LFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRL--SSAKAWLKDGLVLRRN-----------SDEVLVLDRVQRE   69 (371)
Q Consensus         3 ~~~~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~--~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~   69 (371)
                      +.|.+..++.+...+.. ..+.+|+.++|.|.+....+  .+.+.|++++..+...           .+++|.|.+++.+
T Consensus        96 ~~v~v~~~p~~~~~~~~-~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  174 (388)
T 2v5m_A           96 VHVRAVVAQYYEADVNK-EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPE  174 (388)
T ss_dssp             EEEEEECCCCCCCBCCC-EEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTSCEEESSCCGG
T ss_pred             eEEEEccccccccCccc-eeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEccCCcEEEecCCcc
Confidence            34455455555555666 78999999999996544332  3789999988765321           3568999999999


Q ss_pred             CC-eEEEEEEEcCCCCeEE-E---EEEEEecc----eeeEe--cCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEe
Q psy14542         70 DA-GMYQCHVSADDDSAQM-S---AQVILGGE----LVEIA--SSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL  138 (371)
Q Consensus        70 d~-G~Y~C~~~~~~~~~~~-~---~~l~v~~~----~~~~~--~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~  138 (371)
                      |+ |.|+|.+.+..+.... .   ..|.|...    .|.+.  ......+.+|+.++|.|.+.+.|. +.+.|++++..+
T Consensus       175 d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~-p~v~W~~~~~~~  253 (388)
T 2v5m_A          175 DGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPA-PSFRWYKFIEGT  253 (388)
T ss_dssp             GGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEESC-CEEEEEEECTTS
T ss_pred             ccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCCC-CEEEEEecCCCC
Confidence            99 9999999987543321 1   24555421    12211  112334578999999999988877 899999975322


Q ss_pred             eeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchh
Q psy14542        139 RRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKR  218 (371)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~  218 (371)
                      .....  +     .  .         +.+.. ..+..|.|.++..+| .|.|+|.+.|. .|......   .|.|.    
T Consensus       254 ~~~~~--~-----~--~---------~~~~~-~~~~~L~i~~v~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V~----  305 (388)
T 2v5m_A          254 TRKQA--V-----V--L---------NDRVK-QVSGTLIIKDAVVED-SGKYLCVVNNS-VGGESVET---VLTVT----  305 (388)
T ss_dssp             SCEEE--C-----C--C---------SSSEE-EETTEEEESSCCGGG-CEEEEEEEECS-SCEEEEEE---EEEEE----
T ss_pred             ccccc--c-----c--c---------cCcee-cccCEEEECcCCHHH-CeEEEEEEecC-CCceeEEE---EEEEe----
Confidence            11000  0     0  0         01111 223689999999999 99999999998 77766666   78887    


Q ss_pred             ccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542        219 LLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEG  298 (371)
Q Consensus       219 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  298 (371)
                       .+|.+...+.... +..|+.+.|.|.+.|.|.+.+.|+++|..+..+      ++.|.|.++..+|+|.|+|.|.|..|
T Consensus       306 -~~p~~~~~~~~~~-v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~------~~~L~i~~v~~~d~G~Y~C~a~N~~G  377 (388)
T 2v5m_A          306 -APLSAKIDPPTQT-VDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS------ESVLRIESVKKEDKGMYQCFVRNDRE  377 (388)
T ss_dssp             -EEEEEEEESSEEE-ECTTSCEEEEEEEEEECCCEEEEEETTEECSCC------SSEEEESSCCGGGCEEEEEEEECSSC
T ss_pred             -CCCccccCCCcEE-ecCCCCEEEEEEeccccCCeEEEEECCEECccC------CCEEEEecCChhhCEEEEEEEEcCCC
Confidence             6666666666666 899999999999999999999999999887654      46899999999999999999999999


Q ss_pred             CceeEEEEEE
Q psy14542        299 QDKMQLFIQY  308 (371)
Q Consensus       299 ~~~~~~~l~v  308 (371)
                      ....++.|.|
T Consensus       378 ~~~~~~~l~V  387 (388)
T 2v5m_A          378 SAEASAELKL  387 (388)
T ss_dssp             EEEEEEEEEE
T ss_pred             cEEEEEEEEe
Confidence            9999988876

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=3.8e-33  Score=245.21  Aligned_cols=255  Identities=20%  Similarity=0.338  Sum_probs=196.3

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCC---EE----------EeeCCeeEEEEccCCcCCCe---EEEEEEEcCCCC
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDG---LV----------LRRNSDEVLVLDRVQREDAG---MYQCHVSADDDS   84 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~---~~----------~~~~~~~~l~i~~~~~~d~G---~Y~C~~~~~~~~   84 (371)
                      ..+.+|+.+.|.|.+..+.|.+.+.|++++   ..          .....+++|.|.+++.+|+|   .|+|.+.+..+.
T Consensus       110 ~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~  189 (395)
T 1bih_A          110 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVD  189 (395)
T ss_dssp             ECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCS
T ss_pred             eeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccc
Confidence            568899999999965567888999999975   11          11114567999999999999   999999998877


Q ss_pred             eEEEEEEEEec------------ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccC
Q psy14542         85 AQMSAQVILGG------------ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQ  152 (371)
Q Consensus        85 ~~~~~~l~v~~------------~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~  152 (371)
                      ...........            ..|.+ ......+.+|+.+.|.|.+.+.+. +.+.|++++..+.......+...   
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~G~~v~l~C~~~g~p~-~~i~W~~~g~~~~~~~~~~~~~~---  264 (395)
T 1bih_A          190 EEVVLVEYEIKGVTKDNSGYKGEPVPQY-VSKDMMAKAGDVTMIYCMYGSNPM-GYPNYFKNGKDVNGNPEDRITRH---  264 (395)
T ss_dssp             SCEEEEEEEECCCBCCSSCCCCCCEEEE-ECCSEEEETTSCEEEEEEEECSSC-CCCEEEETTEECCCCTTSSEESC---
T ss_pred             eEEEeeeEEecccccccccccCCcCcee-cCCceEEECCCcEEEEEEeccCCC-CeEEEEECCEEcCCCCceeEEEE---
Confidence            54433322210            12333 233445589999999999998887 88999999988765421111000   


Q ss_pred             cCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeee-eeccceeeeecchhccccceeeeeee-
Q psy14542        153 REDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLL-SVNRGRLSLTENKRLLSAAKMFEKHR-  230 (371)
Q Consensus       153 ~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~-~~~~~~l~v~~~~~~~~p~~~~~~~~-  230 (371)
                                      .......|.|.++..+| .|.|+|.+.|. .|.... ..   .|.|.     .+|.+...+.. 
T Consensus       265 ----------------~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~~~~~~---~l~V~-----~~P~~~~~~~~~  318 (395)
T 1bih_A          265 ----------------NRTSGKRLLFKTTLPED-EGVYTCEVDNG-VGKPQKHSL---KLTVV-----SAPKYEQKPEKV  318 (395)
T ss_dssp             ----------------SSSTTSEEEESSCCGGG-CEEEEEEECCS-SSSCEEEEE---EEEEE-----EEEEEEECCCSE
T ss_pred             ----------------ecCCCceEEEccCChhh-CEEEEEEEEeC-CCCceEEEE---EEEEE-----cCCccccCCCcc
Confidence                            00011379999999999 99999999998 665433 55   78888     67777776665 


Q ss_pred             eeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        231 ILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       231 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      .. +..|+.+.|.|.+.|.|.+.+.|+++|..+..+ ++...++.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus       319 ~~-~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          319 IV-VKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             EE-ECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEETTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eE-ecCCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEEECCEEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence            44 899999999999999999999999999988765 67777789999999999999999999999999999988877

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=2.8e-32  Score=243.75  Aligned_cols=288  Identities=16%  Similarity=0.206  Sum_probs=204.6

Q ss_pred             eEEecccceEE-EeCCCcEEEeccCcEEEEEEecCCCCCC---eeEEEeCCEEEeeC------CeeEEEEccCCcCCCeE
Q psy14542          4 FIQVKSSLSIE-MSPSGQVVVDVGHRIELHCRVSPKRLSS---AKAWLKDGLVLRRN------SDEVLVLDRVQREDAGM   73 (371)
Q Consensus         4 ~~~v~~~~~~~-~~p~~~~~~~~G~~v~l~C~~~~~~~~~---~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~   73 (371)
                      .|.|..+|.+. ..|.. ..+.+|+.+.|.|.+.. .+.+   .+.|+|++..+...      ....|.|.+++.+|+|.
T Consensus        79 ~l~V~~~P~~~~~~~~~-~~v~~G~~v~L~C~~~g-~~~~~~~~v~W~k~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~  156 (450)
T 1z7z_I           79 FLTVYWTPERVELAPLP-SWQPVGKNLTLRCQVEG-GAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAN  156 (450)
T ss_dssp             EEEEEBCCSEEEECCCC-SEECTTSEEEEEEEEEC-CBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCE
T ss_pred             EEEEEeCCCcceecCCC-ceEeeCCeEEEEEEecC-CCCCcCcEEEEeeCCEEeecccccccccceEEEEEeeccccCce
Confidence            34444444444 55565 78999999999996654 4444   89999999988654      35689999999999999


Q ss_pred             EEEEEEcCCCCeE--------EEEEEEEecc---eeeEecCCceeeecCCcEEEEEEecCC-CC-CceEEEeeCCEEeee
Q psy14542         74 YQCHVSADDDSAQ--------MSAQVILGGE---LVEIASSNQVVVDVGHRIELHCRVSPK-RL-SSAKAWLKDGLVLRR  140 (371)
Q Consensus        74 Y~C~~~~~~~~~~--------~~~~l~v~~~---~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~-~~~v~W~~~~~~~~~  140 (371)
                      |+|.+.|..+...        ....|.|...   +|.+...  ..+.+|+.+.|.|.+.+. |. .+.+.|++++..+..
T Consensus       157 Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~--~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~  234 (450)
T 1z7z_I          157 FSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSP--RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP  234 (450)
T ss_dssp             EEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECC--SEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC
T ss_pred             EEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCc--eeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc
Confidence            9999998765322        2234444421   1222211  345899999999999988 41 389999999877654


Q ss_pred             C-----CeeEEE-EcccCcCCCe--eEEEEEeCCceeEe-----------------------------------------
Q psy14542        141 N-----SDEVLV-LDRVQREDAG--MYQCHIEDGKYHML-----------------------------------------  171 (371)
Q Consensus       141 ~-----~~~~~~-~~~~~~~~~g--~y~~~~~~~~~~~~-----------------------------------------  171 (371)
                      .     ...... .-++..+|.|  .|+|.+.+......                                         
T Consensus       235 ~~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~~~~v~~G~~v~l~C~~~p~p~i~  314 (450)
T 1z7z_I          235 TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVT  314 (450)
T ss_dssp             EEEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEESCSEEETTCEEEEEEEC-------
T ss_pred             eEEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecCCeeEeCCCcEEEEEecCCCCEeE
Confidence            1     111111 1256889999  99998876522110                                         


Q ss_pred             ----------ccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeee--eeeeeeecCCe
Q psy14542        172 ----------SSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEK--HRILNVKKDES  239 (371)
Q Consensus       172 ----------~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~--~~~~~~~~g~~  239 (371)
                                ....|.|.++..+| .|.|+|.+.|...|..........|.|.     .+|.+....  .... +.+|+.
T Consensus       315 W~g~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~~~g~~~~~~~~~~l~V~-----~~P~~~~~~~p~~~~-~~~g~~  387 (450)
T 1z7z_I          315 LNGVPAQPLGPRAQLLLKATPEDN-GRSFSCSATLEVAGQLIHKNQTRELRVL-----YGPRLDERDCPGNWT-WPENSQ  387 (450)
T ss_dssp             ---------CCCCCEEEECCGGGT-TCEEEEEEEEEETTEEEEEEEEEECEEE-----EEEECCSTTSCSEEE-EETTCE
T ss_pred             ECCEEcCCCCceEEEEEecCcccC-CceEEEEEEcCCCCcccccceeEEEEEe-----cCCceeeccCCCcee-EcCCCe
Confidence                      11248889999999 9999999997634443311112267776     566665543  3445 899999


Q ss_pred             EEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecC
Q psy14542        240 VILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHG  311 (371)
Q Consensus       240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  311 (371)
                      +.|.|.+.|.|.|.+.|++++..+...+      ..+   .+..+|+|.|+|.|.|..|.....+.|.|.++
T Consensus       388 ~~l~C~~~g~P~p~i~W~~~g~~~~~~g------~~~---~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  450 (450)
T 1z7z_I          388 QTPMCQAWGNPLPELKCLKDGTFPLPIG------ESV---TVTRDLEGTYLCRARSTQGEVTREVTVNVLSP  450 (450)
T ss_dssp             ECCCCCCEEESCCEEEEEETTTEECCTT------SCE---ECCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEEecccCCCCcEEEEECCcccCCCC------CeE---eEehhhCeEEEEEEEeCCCceeEEEEEEEEcC
Confidence            9999999999999999999998443332      223   57889999999999999999999999998754

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=100.00  E-value=1.5e-32  Score=235.53  Aligned_cols=271  Identities=16%  Similarity=0.213  Sum_probs=190.4

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCC---CCCeeEEEeCC--EE-------------Ee------------eCCee
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKR---LSSAKAWLKDG--LV-------------LR------------RNSDE   59 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~---~~~~~~W~~~~--~~-------------~~------------~~~~~   59 (371)
                      ++.+.+..+..+.+.+|++++|.|.+....   +...+.|++++  ..             +.            .....
T Consensus        13 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   92 (331)
T 3u83_A           13 DPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDG   92 (331)
T ss_dssp             --------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBC
T ss_pred             CCcceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCc
Confidence            444455555558999999999999654331   44579999943  11             10            00356


Q ss_pred             EEEEccCCcCCCeEEEEEE-EcCCCCeEEEEEEEEecceeeEe---cCCceeeecC---CcEEEEEE-ecCCCCCceEEE
Q psy14542         60 VLVLDRVQREDAGMYQCHV-SADDDSAQMSAQVILGGELVEIA---SSNQVVVDVG---HRIELHCR-VSPKRLSSAKAW  131 (371)
Q Consensus        60 ~l~i~~~~~~d~G~Y~C~~-~~~~~~~~~~~~l~v~~~~~~~~---~~~~~~~~~g---~~v~l~C~-~~~~~~~~~v~W  131 (371)
                      +|.|.+++.+|+|.|+|.+ .+..+.....+.|.|.. +|.+.   ......+.+|   +.++|.|. +.+.|. +.+.|
T Consensus        93 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~-~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~-~~i~W  170 (331)
T 3u83_A           93 TIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMA-KPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPP-SVVSW  170 (331)
T ss_dssp             CEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEB-CCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSC-CEEEE
T ss_pred             eEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEec-CCcceeecCCCceeecCCCccceEEEEEEecCCcCC-ceEEE
Confidence            7999999999999999985 45556667788888884 44332   2333445777   77999998 667676 89999


Q ss_pred             eeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeecccee
Q psy14542        132 LKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRL  211 (371)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l  211 (371)
                      ++++........    .    ...         ++.+.+  ...|.|..+..+| .|.|+|.+.|. .+......   .|
T Consensus       171 ~~~~~~~~~~~~----~----~~~---------~~~~~~--~~~L~i~~~~~~d-~G~Y~C~a~n~-~~~~~~~~---~l  226 (331)
T 3u83_A          171 ETRLKGEAEYQE----I----RNP---------NGTVTV--ISRYRLVPSREAH-QQSLACIVNYH-MDRFKESL---TL  226 (331)
T ss_dssp             EESSCCEEEEEE----E----ECT---------TSCEEE--EEEEEECCCGGGT-TCEEEEEEEET-TEEEEEEE---EC
T ss_pred             EcCCCCccccce----e----ECC---------CCcEEE--EEEEEEEeccccC-CCEEEEEEecC-CCcceeeE---EE
Confidence            996322211100    0    001         112221  2568888889999 99999999998 66666666   77


Q ss_pred             eeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCc-eEEEeCCcccccCCceEEecceEEEe-ccCCCCCeEE
Q psy14542        212 SLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT-IKWYKQDSPVEESDRIQRIGSSLSIS-HVEESDSGVW  289 (371)
Q Consensus       212 ~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~G~Y  289 (371)
                      .|.     .+|.+...+.....+..|+.+.|.|.+.+.|.+. +.|++++..+...  ....+++|.|. ++..+|+|.|
T Consensus       227 ~V~-----~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~--~~~~~~~L~i~~~v~~~d~G~Y  299 (331)
T 3u83_A          227 NVQ-----YEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG--VEAQNRTLFFKGPINYSLAGTY  299 (331)
T ss_dssp             CEE-----EEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTT--EEEETTEEEECSCCCGGGCEEE
T ss_pred             EEe-----cCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCccccc--ceecCcEEEEeCCCccccCeEE
Confidence            777     5666664443333388899999999999999998 9999999987654  34467889999 8999999999


Q ss_pred             EEEEEcCCCCceeEEEEEEecCcc
Q psy14542        290 NCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       290 ~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      +|.|.|..|....++.|.|...+.
T Consensus       300 ~C~a~N~~G~~~~~~~l~V~~~~~  323 (331)
T 3u83_A          300 ICEATNPIGTRSGQVEVNITEAAA  323 (331)
T ss_dssp             EEEEEETTEEEEEEEEECCBC---
T ss_pred             EEEEEeccccceEEEEEEEeccch
Confidence            999999999999999999987766

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=100.00  E-value=2.8e-33  Score=235.80  Aligned_cols=268  Identities=18%  Similarity=0.261  Sum_probs=191.4

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEE---Eee-CCeeEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLV---LRR-NSDEVLVLDRVQREDAGMYQCHVSADDDS   84 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~---~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   84 (371)
                      .+|.|...+.. ..+.+|++++|.|.+. +    .+.|++++..   +.. ....+|.|.+++.+|+|.|+|.+.+..+.
T Consensus         3 ~~P~i~~~~~~-~~v~~G~~v~L~C~~~-~----~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~   76 (292)
T 4dkd_C            3 SIPVIEPSVPE-LVVKPGATVTLRCVGN-G----SVEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLG   76 (292)
T ss_dssp             -CCEEESCCSS-CEECTTCCEEEEEECS-S----CCCBCCCCCSSCEECCBTTEEEEEESSCCGGGCSCEEECCCC----
T ss_pred             CCceecCCCCe-EEEcCCCcEEEEEcCC-C----ceEEccCCCCceEEeccCceEEEEEcccccccCEEEEEEEccCCCC
Confidence            46788888877 8999999999999544 3    2999976432   111 14579999999999999999999988777


Q ss_pred             eEEEEEEEEecceeeEe-cCCceeeecCCcEEEEEEecCCCCCceEEEeeCC-EEeeeCCeeEEEEcccCcCCCeeEEEE
Q psy14542         85 AQMSAQVILGGELVEIA-SSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG-LVLRRNSDEVLVLDRVQREDAGMYQCH  162 (371)
Q Consensus        85 ~~~~~~l~v~~~~~~~~-~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~g~y~~~  162 (371)
                      ....+.|.|...+..+. ......+.+|+.++|.|.+.+....+.+.|++++ ..+....                    
T Consensus        77 ~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~--------------------  136 (292)
T 4dkd_C           77 GSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHT--------------------  136 (292)
T ss_dssp             CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESSGGGGSSEEEEEGGGCCCCSSC--------------------
T ss_pred             cceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCCCCcceeEEEEecCCCccccCC--------------------
Confidence            78888999984433333 3334445899999999999873322689999974 4333221                    


Q ss_pred             EeCCceeEeccceEEEEEeecCCccceeEEEeecccccee-eeeeccceeeeecchhccccceeeeeeeeeeeecCCeEE
Q psy14542        163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS-LLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVI  241 (371)
Q Consensus       163 ~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~  241 (371)
                          ++....+..|.|.++...| .|.|+|.+.+. .+.. ....   .|.|..... .+|.+...+.... +..|+.+.
T Consensus       137 ----~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~-~~~~~s~~~---~l~V~~~~~-~~p~i~~~~~~~~-~~~g~~v~  205 (292)
T 4dkd_C          137 ----NYSFSPWHGFTIHRAKFIQ-SQDYQCSALMG-GRKVMSISI---RLKVQKVIP-GPPALTLVPAELV-RIRGEAAQ  205 (292)
T ss_dssp             ----CEECCSSSCCEETTCCGGG-CSEEEEEECST-TSCEECCCE---EEEEECCCC-SSCEEEEESSCBC-CCSSSCEE
T ss_pred             ----cccccCCceEEECCCCHHH-CeEEEEEEEeC-CCceeEEEE---EEEEeCCCC-CCCeEEccCCcee-EecCCCEE
Confidence                2222233569999999999 99999999987 4433 2244   666662111 2677777666665 78999999


Q ss_pred             EEEEeecCCC-CceEEEeCCcccccCCceE------EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542        242 LPCSAQGNPL-PTIKWYKQDSPVEESDRIQ------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       242 l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      |.|.+.+.|. +.+.|++++..+.......      ...+.|.|.++..+|+|.|+|.|.|..|....++.|.|.....
T Consensus       206 l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~  284 (292)
T 4dkd_C          206 IVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAG  284 (292)
T ss_dssp             EEEEEEESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC-----
T ss_pred             EEEEecCCCCceEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeCCC
Confidence            9999998665 5688889888665443222      2335899999999999999999999999999999999887655

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-32  Score=242.87  Aligned_cols=261  Identities=11%  Similarity=0.096  Sum_probs=174.4

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----CeeEEEEcc-CCcCCCeEEEEEEEcCCCCeEE-EEEEEEe
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----SDEVLVLDR-VQREDAGMYQCHVSADDDSAQM-SAQVILG   94 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----~~~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v~   94 (371)
                      ..+..|+.+.|.|. ..+.|.+.+.|++++..+...    ....+.... ++..|+|.|+|.|.|..|.... .+.|.|.
T Consensus       149 ~~~~~~~~~~L~C~-a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~  227 (423)
T 3qs7_E          149 YFRKMENQDALVCI-SESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLN  227 (423)
T ss_dssp             EEEECSSSSCEEEE-EEESSCCEEEEEEC-------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESS
T ss_pred             cEeccCCceEEEEE-EeeecCCeEEEEECCCCCccccccccccccccceEEecccCeEEEEEEEcCCCCcceeeEEEEEe
Confidence            34667889999994 567899999999988754321    111111111 2578999999999998886643 3667766


Q ss_pred             cceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccc
Q psy14542         95 GELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG  174 (371)
Q Consensus        95 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~  174 (371)
                       ..+.+ ......+.+|+.+.|.|.+.+.++.+.++|++++..+.....+.....               .+........
T Consensus       228 -~~p~~-~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~---------------~~~~~~~~~~  290 (423)
T 3qs7_E          228 -QTPQT-TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTY---------------STNRTMIRIL  290 (423)
T ss_dssp             -SCCCS-STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEE---------------ETTTEEEEEE
T ss_pred             -cCCcc-CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccc---------------cCCceeEEEE
Confidence             33333 223344589999999999998443389999999987654321110000               0011122335


Q ss_pred             eEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeee--eeeeeeecCCeEEEEEEeecCCCC
Q psy14542        175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEK--HRILNVKKDESVILPCSAQGNPLP  252 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~--~~~~~~~~g~~~~l~C~~~~~p~~  252 (371)
                      .|.|.+++.+| +|.|+|.|.|.    .....   .|.|.     .+|.+...+  .... +.+|+.+.|.|.+.|+|.|
T Consensus       291 ~L~I~~v~~~D-~G~Y~C~A~N~----~~~~~---~L~V~-----~~p~i~~~~~~~~~~-v~~G~~v~l~C~~~g~P~p  356 (423)
T 3qs7_E          291 FAFVSSVARND-TGYYTCSSSKH----PSQSA---LVTIV-----EKGFINATNSSEDYE-IDQYEEFCFSVRFKAYPQI  356 (423)
T ss_dssp             EEEESSCCTTT-CEEEEEEETTE----EEEEE---EEEEE-----SSCEEEEC---CEEC-CCTTCCCCEEEEEEEESCC
T ss_pred             EEEEeecCHHH-CEEEEEEEecC----CCceE---EEEEE-----eCCcceEcCCCccEE-ecCCCeEEEEEEEEEcCCC
Confidence            79999999999 99999999886    34444   77777     455554433  2344 8889999999999999999


Q ss_pred             ceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542        253 TIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       253 ~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      .++|+++|..+....+.......+.+.....+|+|.|+|.|.|..|....++.|.|..+|.
T Consensus       357 ~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~  417 (423)
T 3qs7_E          357 RCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTK  417 (423)
T ss_dssp             EEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC------
T ss_pred             eEEEEECCEECCCccccccCCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCCc
Confidence            9999999998866532111122333356778999999999999999999999999988776

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=100.00  E-value=4.3e-34  Score=246.00  Aligned_cols=271  Identities=19%  Similarity=0.272  Sum_probs=201.2

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecC------CCCCCeeEEEeCCEEE--eeC-------CeeEEEEccCCcCCCe
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSP------KRLSSAKAWLKDGLVL--RRN-------SDEVLVLDRVQREDAG   72 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~------~~~~~~~~W~~~~~~~--~~~-------~~~~l~i~~~~~~d~G   72 (371)
                      ...|.+...|.. ..+.+|+++.|.|.+..      +.|.+.+.|++++..+  ...       .+.+|.|.+++.+|+|
T Consensus        16 ~~~p~~~~~~~~-~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G   94 (339)
T 3o4o_C           16 RSCRFRGRHYKR-EFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSG   94 (339)
T ss_dssp             --CEEEEECSCC-EEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCE
T ss_pred             hhhHhhCcCceE-EEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccCE
Confidence            456788888888 99999999999995431      7788899999988763  221       3568999999999999


Q ss_pred             EEEEEEEcCCCCeEEEEEEEEecceeeE--ecCCceeeecCCcEEEEEE-----ecCCCCCceEEEeeCCEEeeeCCeeE
Q psy14542         73 MYQCHVSADDDSAQMSAQVILGGELVEI--ASSNQVVVDVGHRIELHCR-----VSPKRLSSAKAWLKDGLVLRRNSDEV  145 (371)
Q Consensus        73 ~Y~C~~~~~~~~~~~~~~l~v~~~~~~~--~~~~~~~~~~g~~v~l~C~-----~~~~~~~~~v~W~~~~~~~~~~~~~~  145 (371)
                      .|+|.+.+..+.....+.|.|...+...  .......+.+|+.+.|.|.     +.+.+. +.+.|++++..+.....  
T Consensus        95 ~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~-~~v~W~k~g~~~~~~~~--  171 (339)
T 3o4o_C           95 TYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTD-VKIQWYKDSLLLDKDNE--  171 (339)
T ss_dssp             EEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSC-CCBCCEESSCBCCTTCS--
T ss_pred             EEEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCC-ceEEEecCCeeCCCCCc--
Confidence            9999999988877888888887432211  1122234589999999999     666666 89999999987764421  


Q ss_pred             EEEcccCcCCCeeEEEEEeCCceeEecc-ceEEEEEeecCCccceeEEEeeccccc----eeeeeeccceeeeecchhcc
Q psy14542        146 LVLDRVQREDAGMYQCHIEDGKYHMLSS-GELIIHQVDESDRYRSYQCRGVNKLTG----ASLLSVNRGRLSLTENKRLL  220 (371)
Q Consensus       146 ~~~~~~~~~~~g~y~~~~~~~~~~~~~~-~~l~i~~~~~~d~~g~y~C~~~~~~~~----~~~~~~~~~~l~v~~~~~~~  220 (371)
                                           ++..... ..|.|.+++.+| .|.|+|.+.|. .+    ......   .|.|.......
T Consensus       172 ---------------------~~~~~~~~~~L~i~~v~~~d-~G~Y~C~a~n~-~g~~~~~~~~~~---~l~V~~~~~~~  225 (339)
T 3o4o_C          172 ---------------------KFLSVRGTTHLLVHDVALED-AGYYRCVLTFA-HEGQQYNITRSI---ELRIKKKKEET  225 (339)
T ss_dssp             ---------------------SEEECTTSSEEEESSCCGGG-CEEEEEEEECC-BTTBCCEEEEEE---EEEEECCCCCC
T ss_pred             ---------------------eeEEcCCcceEEEcccCHhh-CeEEEEEEEEC-CCCeEEEEEEEE---EEEEEcCCCCC
Confidence                                 2222221 479999999999 99999999987 44    233344   67776543334


Q ss_pred             ccceeeeeeeeeeeecCCeEEEEEEe---ecCC-CCceEEEeCCcccccC---------CceE-Eecc------eEEEec
Q psy14542        221 SAAKMFEKHRILNVKKDESVILPCSA---QGNP-LPTIKWYKQDSPVEES---------DRIQ-RIGS------SLSISH  280 (371)
Q Consensus       221 ~p~~~~~~~~~~~~~~g~~~~l~C~~---~~~p-~~~v~W~~~~~~~~~~---------~~~~-~~~~------~l~i~~  280 (371)
                      +|.+...+.... +..|+.+.|.|.+   .|.| .+.+.|++++..+...         .++. ..++      .|.|.+
T Consensus       226 ~P~i~~~~~~~~-v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~  304 (339)
T 3o4o_C          226 IPVIISPLKTIS-ASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDP  304 (339)
T ss_dssp             CCEECCCSCCCC-CCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECS
T ss_pred             CCEEecCCceeE-eccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEE
Confidence            566665555555 8899999999999   8888 7899999999876432         1211 1122      799999


Q ss_pred             cCCCCC-eEEEEEEEcCCCCceeEEEEEEe
Q psy14542        281 VEESDS-GVWNCVANNSEGQDKMQLFIQYA  309 (371)
Q Consensus       281 ~~~~d~-G~Y~C~a~n~~g~~~~~~~l~v~  309 (371)
                      +..+|+ |.|+|.|.|..|..+..+.+.+.
T Consensus       305 v~~~d~~G~Y~C~a~N~~G~~~~~~~~~~~  334 (339)
T 3o4o_C          305 VTREDLHMDFKCVVHNTLSFQTLRTTVKEH  334 (339)
T ss_dssp             SCCCSCCCCCEEEEEETTEEECCBCCCCC-
T ss_pred             echhhcCccEEEEEEeccCceEEEEEhhHh
Confidence            999997 99999999999998877666543

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=100.00  E-value=1.3e-32  Score=237.78  Aligned_cols=266  Identities=11%  Similarity=0.164  Sum_probs=162.6

Q ss_pred             EeCCCcEEEeccCcEEEEEEecCCCC-----------CCeeEEEeCCE------EEe---eC-----CeeEEEEccCCcC
Q psy14542         15 MSPSGQVVVDVGHRIELHCRVSPKRL-----------SSAKAWLKDGL------VLR---RN-----SDEVLVLDRVQRE   69 (371)
Q Consensus        15 ~~p~~~~~~~~G~~v~l~C~~~~~~~-----------~~~~~W~~~~~------~~~---~~-----~~~~l~i~~~~~~   69 (371)
                      +.+...+.+.+|+++.|.|.+ .+.|           .+.+.|+|++.      .+.   ..     ....|.|.+++.+
T Consensus        11 ~~~~~~v~v~~G~~v~L~C~~-~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   89 (349)
T 4dep_C           11 LDTMRQIQVFEDEPARIKCPL-FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLN   89 (349)
T ss_dssp             ECCCCCCEEETTSCEEEECTC-CCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGG
T ss_pred             cceeeeEEEecCCeEEEEccc-cccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChh
Confidence            444444789999999999954 4333           48999999873      111   00     3568999999999


Q ss_pred             CCeEEEEEEEcCCCCeEEEEEEEEecceeeEec----CCceeeecCCcEEEEEEe-----cCCCCCceEEEeeCCEEeee
Q psy14542         70 DAGMYQCHVSADDDSAQMSAQVILGGELVEIAS----SNQVVVDVGHRIELHCRV-----SPKRLSSAKAWLKDGLVLRR  140 (371)
Q Consensus        70 d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~----~~~~~~~~g~~v~l~C~~-----~~~~~~~~v~W~~~~~~~~~  140 (371)
                      |+|.|+|.+.+..+.....+.|.|...+.....    .....+.+|+.+.|.|.+     .+.+. +.+.|++++..+..
T Consensus        90 D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~-~~v~W~k~~~~l~~  168 (349)
T 4dep_C           90 DTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVK-PTITWYMGCYKIQN  168 (349)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSC-CEEEEEETTEECCS
T ss_pred             hCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCC-ceEEEeeCCEECCC
Confidence            999999999998887788888888742221111    112234789999999985     55566 89999999987754


Q ss_pred             CCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecccccee---eeeeccceeeeecch
Q psy14542        141 NSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS---LLSVNRGRLSLTENK  217 (371)
Q Consensus       141 ~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~---~~~~~~~~l~v~~~~  217 (371)
                      ...                        + ......|.|.+++.+| +|.|+|.+.|...+..   ....   .+.|....
T Consensus       169 ~~~------------------------~-~~~~~~L~i~~v~~~d-~G~Y~C~a~n~~~g~~~~~~~~~---~l~v~~~~  219 (349)
T 4dep_C          169 FNN------------------------V-IPEGMNLSFLIALISN-NGNYTCVVTYPENGRTFHLTRTL---TVKVVGSP  219 (349)
T ss_dssp             CSS------------------------E-EEETTEEEEESCCGGG-CEEEEEEEEEEETTEEEEEEEEE---EEEEECCG
T ss_pred             ccc------------------------e-eecCCEEEEeeeeecC-CcEEEEEEEEeeCCEEEEEEEEE---EEEEEccC
Confidence            211                        1 1112579999999999 9999999999833543   3333   55555321


Q ss_pred             hc-cccceeeeeeee--eeeecCCeEEEEEEee----cCCCCceEEEeCCccccc-CCceE-------------EecceE
Q psy14542        218 RL-LSAAKMFEKHRI--LNVKKDESVILPCSAQ----GNPLPTIKWYKQDSPVEE-SDRIQ-------------RIGSSL  276 (371)
Q Consensus       218 ~~-~~p~~~~~~~~~--~~~~~g~~~~l~C~~~----~~p~~~v~W~~~~~~~~~-~~~~~-------------~~~~~l  276 (371)
                      .. .+|.+.......  . +..|+.+.|.|.+.    +.|.+.+.|++++..+.. ..++.             ...++|
T Consensus       220 ~~~~~p~i~~~~~~~~~~-v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L  298 (349)
T 4dep_C          220 KNAVPPVIHSPNDHVVYE-KEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQIL  298 (349)
T ss_dssp             GGCCSCEEC-----------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC
T ss_pred             CCCCCCeEecCCCceeEE-EecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEE
Confidence            11 145554444322  4 88999999999998    568899999999988765 22221             123459


Q ss_pred             EEeccCCCCC-eEEEEEEEcCCCCceeEEEEEEecCc
Q psy14542        277 SISHVEESDS-GVWNCVANNSEGQDKMQLFIQYAHGK  312 (371)
Q Consensus       277 ~i~~~~~~d~-G~Y~C~a~n~~g~~~~~~~l~v~~~p  312 (371)
                      .|.++..+|+ |.|+|.|.|..|.....+.|.|..++
T Consensus       299 ~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~~~  335 (349)
T 4dep_C          299 SIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPA  335 (349)
T ss_dssp             -------------CEEEEECSSCEEEEECC-------
T ss_pred             EEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeeecCC
Confidence            9999999999 99999999999999999999887633

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=6.3e-31  Score=242.77  Aligned_cols=294  Identities=18%  Similarity=0.273  Sum_probs=212.9

Q ss_pred             eeeEEecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEe---------------eC----------
Q psy14542          2 QLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR---------------RN----------   56 (371)
Q Consensus         2 ~~~~~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~---------------~~----------   56 (371)
                      .+.|.|..+|.+...+.. ..+.+|+.++|.|.+....+.+.+.|+|++....               ..          
T Consensus       104 ~~~l~V~~~p~~~~~~~~-~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  182 (585)
T 2ocw_A          104 DVSLEVSQGPGLLNDTKV-YTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQ  182 (585)
T ss_pred             EEEEEEecCccccCCCcc-EEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCC
Confidence            356677777777777777 8899999999999776566677899999864311               00          


Q ss_pred             CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCC-ceEEEe-eC
Q psy14542         57 SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLS-SAKAWL-KD  134 (371)
Q Consensus        57 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~~v~W~-~~  134 (371)
                      ...+|.|.+++.+|+|.|+|.+.+..+.....+.|.|...+|.     ...+.+|+.+.|.|.+.+.+++ +.+.|+ ++
T Consensus       183 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~-----~~~~~~G~~v~l~C~~~~~~~~~~~~~w~~~~  257 (585)
T 2ocw_A          183 LLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPE-----LVYEDLRGSVTFHCALGPEVANVAKFLCRQSS  257 (585)
T ss_pred             cEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCCCc-----eeEEcCCCcEEEEEEcCCCCCCceEEEEEeCC
Confidence            1237999999999999999999998888888888888743322     2234789999999998544433 688886 77


Q ss_pred             CE---Eeee--------------------CCeeEEEEcccCcCCCeeEEEEEeCCc------------------------
Q psy14542        135 GL---VLRR--------------------NSDEVLVLDRVQREDAGMYQCHIEDGK------------------------  167 (371)
Q Consensus       135 ~~---~~~~--------------------~~~~~~~~~~~~~~~~g~y~~~~~~~~------------------------  167 (371)
                      +.   .+..                    ...+.|.+.++..+|.|.|+|.+.+..                        
T Consensus       258 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~~~~~~~~~l~V~~~p~~~~~  337 (585)
T 2ocw_A          258 GENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRS  337 (585)
T ss_pred             CCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCCccccCceeeEEEEEecccccccC
Confidence            62   1110                    112368899999999999997654210                        


Q ss_pred             -------------------------e----eEec--c-----------------------------c--eEEEEEeecCC
Q psy14542        168 -------------------------Y----HMLS--S-----------------------------G--ELIIHQVDESD  185 (371)
Q Consensus       168 -------------------------~----~~~~--~-----------------------------~--~l~i~~~~~~d  185 (371)
                                               .    ....  +                             +  .|.|.+++.+|
T Consensus       338 ~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D  417 (585)
T 2ocw_A          338 PTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRD  417 (585)
T ss_pred             CcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhh
Confidence                                     0    0000  1                             1  17788899999


Q ss_pred             ccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEee----cCCCCceEEEeCCc
Q psy14542        186 RYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQ----GNPLPTIKWYKQDS  261 (371)
Q Consensus       186 ~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~----~~p~~~v~W~~~~~  261 (371)
                       .|.|+|.+ |. .+......   .|.|...    +|.+.. +.... +..|+.+.|.|.+.    +.|.+.+.|+++|.
T Consensus       418 -~G~Y~C~a-n~-~g~~~~~~---~l~V~~~----~p~~~~-~~~~~-v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~  485 (585)
T 2ocw_A          418 -AGFYWCLT-NG-DTLWRTTV---EIKIIEG----EPNLKV-PGNVT-AVLGETLKVPCHFPCKFSSYEKYWCKWNNTGC  485 (585)
T ss_pred             -CEEEEEcc-cC-CCccceeE---EEEEecC----cccccc-CCcee-EecCCcEEEEEEecCCCCCCccEEEEEeecCc
Confidence             99999999 66 56655555   7777632    333332 44455 89999999999986    67778999999998


Q ss_pred             ccccCCc------eEE-----ecceEEEeccCCCCCeEEEEEEEcCCCCce-eEEEEEEecCcc
Q psy14542        262 PVEESDR------IQR-----IGSSLSISHVEESDSGVWNCVANNSEGQDK-MQLFIQYAHGKY  313 (371)
Q Consensus       262 ~~~~~~~------~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~~p~  313 (371)
                      .+.....      +..     ..+.|.|.++..+|+|.|+|.|.|..|... ..+.|.|..+|.
T Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p~  549 (585)
T 2ocw_A          486 QALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKA  549 (585)
T ss_pred             eeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeeee
Confidence            7644321      111     124899999999999999999999999765 448899998874

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=100.00  E-value=5.7e-32  Score=231.50  Aligned_cols=268  Identities=14%  Similarity=0.194  Sum_probs=176.0

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEE----Eee-------------------CCeeEEEEccC
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLV----LRR-------------------NSDEVLVLDRV   66 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~----~~~-------------------~~~~~l~i~~~   66 (371)
                      ++.|...|.. +.+.+|+++.|.|.+....|.+.+.|+|++..    +..                   ....+|.|.++
T Consensus         3 ~~~v~~~p~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v   81 (327)
T 2wng_A            3 ELQVIQPDKS-VSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNI   81 (327)
T ss_dssp             CCCEECCCSE-EEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSC
T ss_pred             eeEEEcCCCc-eEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccC
Confidence            4566666666 89999999999997655447789999998632    111                   13457999999


Q ss_pred             CcCCCeEEEEEEEcCCCCeE-----EEEEEEEec--ceeeEecCCceeeecCCcEEEEEEecCCCCC-ceEEEeeCCEEe
Q psy14542         67 QREDAGMYQCHVSADDDSAQ-----MSAQVILGG--ELVEIASSNQVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVL  138 (371)
Q Consensus        67 ~~~d~G~Y~C~~~~~~~~~~-----~~~~l~v~~--~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~~v~W~~~~~~~  138 (371)
                      +.+|+|.|+|.+.+..+...     ..+.|.|..  .++.+. .+...+.+|+.+.|.|.+.+.+++ ..+.|++++..+
T Consensus        82 ~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~-~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l  160 (327)
T 2wng_A           82 TPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVS-GPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNEL  160 (327)
T ss_dssp             CGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEE-CCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             ccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceee-ccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEc
Confidence            99999999999998765421     235666653  223333 334455889999999999987763 399999999887


Q ss_pred             eeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecccccee---eeeeccceeeeec
Q psy14542        139 RRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS---LLSVNRGRLSLTE  215 (371)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~---~~~~~~~~l~v~~  215 (371)
                      ........     ...+.|         .+.+.  +.|.|.....+| .|.|+|.+.|. .+..   ....   .+.+..
T Consensus       161 ~~~~~~~~-----~~~~~~---------~~~~~--s~L~i~~~~~d~-~g~Y~C~a~n~-~~~~~~~~~~~---~~~~~v  219 (327)
T 2wng_A          161 SDFQTNVD-----PVGESV---------SYSIH--STAKVVLTREDV-HSQVICEVAHV-TLQGDPLRGTA---NLSETI  219 (327)
T ss_dssp             CCEEEEEE-----CSSCCS---------CEEEE--EEEEEECCTTGG-GCEEEEEEECT-TSCSCCEEEEE---EGGGTB
T ss_pred             cccccccc-----cccCCC---------ceEEE--EEEEEechhcCc-CceEEEEEecc-ccCCCcccceE---Eecccc
Confidence            65421100     001122         22221  467787777777 89999999997 4431   2222   332221


Q ss_pred             chhccccceeeeeeeeeeeecCCeEEEEEEeecCC-CC-ceEEEeCCcccccCC--ceE-E------ecceEEEeccCCC
Q psy14542        216 NKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNP-LP-TIKWYKQDSPVEESD--RIQ-R------IGSSLSISHVEES  284 (371)
Q Consensus       216 ~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~-~v~W~~~~~~~~~~~--~~~-~------~~~~l~i~~~~~~  284 (371)
                      .   .+|.+...+..   +..|+.+.|.|.+.|.+ ++ .+.|+++|..+....  ++. .      ....|.|..+..+
T Consensus       220 ~---~~P~i~~~~~~---~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~  293 (327)
T 2wng_A          220 R---VPPTLEVTQQP---VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHR  293 (327)
T ss_dssp             C---BCCEEEEEEEC---CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC------
T ss_pred             C---CCCEEEEecCC---cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEcccccc
Confidence            1   56666655443   77899999999999854 44 799999998775431  111 1      1135888889999


Q ss_pred             CCeEEEEEEEcCCCCc-eeEEEE
Q psy14542        285 DSGVWNCVANNSEGQD-KMQLFI  306 (371)
Q Consensus       285 d~G~Y~C~a~n~~g~~-~~~~~l  306 (371)
                      |+|.|+|.|.|..|.. +.++.+
T Consensus       294 d~G~Y~C~a~N~~~~~~s~~~~~  316 (327)
T 2wng_A          294 DDVKLTCQVEHDGQPAVSKSHDL  316 (327)
T ss_dssp             -CCEEEEEEEETTCCCEEEEEEC
T ss_pred             CCCEEEEEEEeCCCCCchhheEE
Confidence            9999999999999875 444433

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=5.6e-32  Score=244.53  Aligned_cols=258  Identities=16%  Similarity=0.181  Sum_probs=177.6

Q ss_pred             eEEecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------------CeeEEEEccCCc
Q psy14542          4 FIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------------SDEVLVLDRVQR   68 (371)
Q Consensus         4 ~~~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------------~~~~l~i~~~~~   68 (371)
                      .|.|...|.+  .|.. ..+.+|+.+.|.|.+..+.|.+.+.|++++..+...               ...+|.|.+++.
T Consensus       223 ~l~V~~~p~~--~p~~-~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~  299 (527)
T 3qs9_E          223 TIDLNQTPQT--TLPQ-LFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVAR  299 (527)
T ss_dssp             EEESSSCCCC--SCCE-EEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCG
T ss_pred             EEEEeccCcc--CCCc-eEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCc
Confidence            3444444443  3344 889999999999976557889999999988754321               234699999999


Q ss_pred             CCCeEEEEEEEcCCCCeEEEEEEEEecceeeEecCC---ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeE
Q psy14542         69 EDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSN---QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV  145 (371)
Q Consensus        69 ~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~---~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~  145 (371)
                      +|+|.|+|.+.|.   ....+.|.|. .++.+...+   ...+.+|+.+.|.|.+.+.|. +.++|+|++..+...... 
T Consensus       300 ~DsG~Y~C~a~N~---~~~~~~L~V~-~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~-p~i~W~k~g~~l~~~~~~-  373 (527)
T 3qs9_E          300 NDTGYYTCSSSKH---PSQSALVTIV-EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQ-IRCTWTFSRKSFPCEQKG-  373 (527)
T ss_dssp             GGCEEEEEEETTE---EEEEEEEEEC---CEEECCCSCCEECCCTTCCCCEEEEEEEESC-CEEEEEETTEEEECBCCB-
T ss_pred             ccCeEEEEEEEeC---CCceEEEEEE-ccCccccccCcccEEEcCCCeEEEEEEEEecCC-CEEEEEECCEECcCCccc-
Confidence            9999999999886   6777888888 455444333   233478999999999999888 899999999988654310 


Q ss_pred             EEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhcccccee
Q psy14542        146 LVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKM  225 (371)
Q Consensus       146 ~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~  225 (371)
                                              ......|.|.+++.+| +|.|+|.|.|. .|.....+   .|.|.     .+|.+.
T Consensus       374 ------------------------~~~~~~L~I~~v~~~D-~G~YtC~A~N~-~g~~~~~~---~L~V~-----~~P~i~  419 (527)
T 3qs9_E          374 ------------------------LDNGYSISKFCNHKHQ-PGEYIFHAEND-DAQFTKMF---TLNIR-----RKPQVL  419 (527)
T ss_dssp             ------------------------CSSSSEEEEECCCTTC-CSCEEEEEEET-TEEEEEEE---EEC-------CCCEEE
T ss_pred             ------------------------ccCCcEEEEecCCccc-CEEEEEEEEeC-CCcEEEEE---EEEEe-----cCCeEE
Confidence                                    0122578999999999 99999999999 77776666   88887     677765


Q ss_pred             eeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCc-------------eE--EecceEEEeccCCCCCeEEE
Q psy14542        226 FEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDR-------------IQ--RIGSSLSISHVEESDSGVWN  290 (371)
Q Consensus       226 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~-------------~~--~~~~~l~i~~~~~~d~G~Y~  290 (371)
                      ....       |  ..|.|.+.|.|.|.+.|++++........             ..  .....+.+.-...+|+|.|+
T Consensus       420 ~~~~-------~--~~l~C~a~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~  490 (527)
T 3qs9_E          420 AEAS-------A--SQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVK  490 (527)
T ss_dssp             ECCC-------C--E---EEEECSSCCEEEEECCC-----CCCCCCCCEEEC---------CEEEEECCCCCSSCSCEEE
T ss_pred             EeCC-------C--CEEEEEEEEEcCCeEEEEECCCCcCCCccccccccceeccccccCCceEEEEEEEEEEcCCCEEEE
Confidence            4321       2  35799999999999999987654321100             00  00112233333456999999


Q ss_pred             EEEEcCCCCceeEEEEEEecCcc
Q psy14542        291 CVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       291 C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      |.|.|..|.....+.|.|..+..
T Consensus       491 C~A~N~~G~~~~~~~L~V~~p~~  513 (527)
T 3qs9_E          491 CCAYNSLGTSCETILLNSPGPFP  513 (527)
T ss_dssp             EEEECSSCEEEEEEEC-------
T ss_pred             EEEEeCCCCceeEEEEecCCCce
Confidence            99999999999999998876655

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=100.00  E-value=3.7e-32  Score=231.45  Aligned_cols=272  Identities=15%  Similarity=0.186  Sum_probs=178.8

Q ss_pred             EEecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----CeeEEEEccCCcCCCeEEEEEEE
Q psy14542          5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHVS   79 (371)
Q Consensus         5 ~~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~   79 (371)
                      ..+.++|.|...|..  .+.+|++++|.|.+...  .+.+.|+|+|..+...     ....|.|.+++.+|+|.|+|.+.
T Consensus        19 ~~~~~~P~i~~~p~~--~v~~G~~v~L~C~~~~~--~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   94 (316)
T 3vh8_G           19 MGGQDKPFLSAWPSA--VVPRGGHVTLRCHYRHR--FNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGS   94 (316)
T ss_dssp             -----CCEEEEESCS--EEETTSCEEEEEEBTTB--CCSEEEEESSCSSSCHHHHCCBSSCEEECSCCGGGCEEEEEEEB
T ss_pred             cCCCCCCEeeccCCC--ccCCCCCEEEEEEccCC--CceEEEEeCCCccceeecCCcceEEEEECCCCcccCeEEEEEEE
Confidence            345678999999985  68899999999965443  5789999998765432     56789999999999999999998


Q ss_pred             cCC-----CCeEEEEEEEEec--ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccC
Q psy14542         80 ADD-----DSAQMSAQVILGG--ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQ  152 (371)
Q Consensus        80 ~~~-----~~~~~~~~l~v~~--~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~  152 (371)
                      +..     ......+.|.|..  .+|.+...+...+.+|+.++|.|.+.+. . ..+.|++++..+........      
T Consensus        95 ~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~-~-~~~~w~k~g~~~~~~~~~~~------  166 (316)
T 3vh8_G           95 HPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIM-F-EHFFLHKEGISKDPSRLVGQ------  166 (316)
T ss_dssp             CSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEEESSC-C-SEEEEEETTCCSCCEEEECE------
T ss_pred             cCCCCcceecCCCcEEEEEecCCCCCeEEecCCCccCCCCeEEEEEcCCCC-C-cEEEEEECCCccccceeeee------
Confidence            532     2234556677653  3455555555557899999999999543 3 68999999876543210000      


Q ss_pred             cCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeee---eeccceeeeecchhccccceeeeee
Q psy14542        153 REDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLL---SVNRGRLSLTENKRLLSAAKMFEKH  229 (371)
Q Consensus       153 ~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~---~~~~~~l~v~~~~~~~~p~~~~~~~  229 (371)
                                    .........|.|.+++.+| +|.|+|.+.|. .+....   +. ...+.|..  ...+|.+...+.
T Consensus       167 --------------~~~~~~~~~L~i~~v~~~D-~G~Y~C~a~n~-~g~~~~s~~s~-~~~l~V~~--~~~~p~i~~~~~  227 (316)
T 3vh8_G          167 --------------IHDGVSKANFSIGPMMLAL-AGTYRCYGSVT-HTPYQLSAPSD-PLDIVVTG--PYEKPSLSAQPG  227 (316)
T ss_dssp             --------------EETTEEEEEEEECSCCGGG-CEEEEEEEECT-TCTTBCCCCCC-CEEEEEEC--SSCCCEEEEESC
T ss_pred             --------------ecCCCceEEEEECCCChhh-CceEEEEEecC-CCCccccCCCC-CEEEEecC--CCCCCeEEeCCC
Confidence                          0000122579999999999 99999999987 443111   11 11444442  224555555443


Q ss_pred             eeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceE-----EecceEEEeccCCCCCeEEEEEEEcCCCC-----
Q psy14542        230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ-----RIGSSLSISHVEESDSGVWNCVANNSEGQ-----  299 (371)
Q Consensus       230 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-----  299 (371)
                      . . +.+|+.++|.|.+. .|.+.+.|+++|..+.......     ...+.|.|.++.  |+|.|+|.|.|..+.     
T Consensus       228 ~-~-v~~G~~v~L~C~~~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~  302 (316)
T 3vh8_G          228 P-K-VQAGESVTLSCSSR-SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSD  302 (316)
T ss_dssp             S-C-CCTTSCCEEEEEES-SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECC
T ss_pred             C-e-ecCCCcEEEEEECC-CCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccC
Confidence            3 3 88999999999987 5778999999998765432211     122579999998  999999999997763     


Q ss_pred             ceeEEEEEEecCc
Q psy14542        300 DKMQLFIQYAHGK  312 (371)
Q Consensus       300 ~~~~~~l~v~~~p  312 (371)
                      .+..+.|.|..+|
T Consensus       303 ~S~~~~l~V~g~p  315 (316)
T 3vh8_G          303 PSDPLLVSVTGNP  315 (316)
T ss_dssp             CCCCEEC------
T ss_pred             CCCcEEEEEeCCC
Confidence            4666777777665

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=100.00  E-value=2.5e-31  Score=220.50  Aligned_cols=239  Identities=15%  Similarity=0.216  Sum_probs=176.1

Q ss_pred             EEeccCcEEEEEEecCCCCCC--eeEEEeCCEEEeeC---CeeEEEEccC---CcCCCe--EEEEEEEcCCCCeEEEEEE
Q psy14542         22 VVDVGHRIELHCRVSPKRLSS--AKAWLKDGLVLRRN---SDEVLVLDRV---QREDAG--MYQCHVSADDDSAQMSAQV   91 (371)
Q Consensus        22 ~~~~G~~v~l~C~~~~~~~~~--~~~W~~~~~~~~~~---~~~~l~i~~~---~~~d~G--~Y~C~~~~~~~~~~~~~~l   91 (371)
                      .+.+|++++|.|.+....|.+  .+.|+|++..+...   ....+.+..+   +.+|+|  .|+|.+.+..+.....+.|
T Consensus        14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~~~l   93 (265)
T 2oz4_A           14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTV   93 (265)
T ss_dssp             EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCCEEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEEEEE
T ss_pred             eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCceEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCcEEEEEE
Confidence            689999999999766546765  89999999876543   3345666655   778888  4999999988887788888


Q ss_pred             EEecc-eeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeE
Q psy14542         92 ILGGE-LVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHM  170 (371)
Q Consensus        92 ~v~~~-~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~  170 (371)
                      .|... ++.+.. ....+.+|+.+.|.|.+.  +. +.++|  +|..+....                            
T Consensus        94 ~V~~~p~p~~~~-~~~~v~~G~~v~l~C~~~--p~-~~i~W--~g~~~~~~~----------------------------  139 (265)
T 2oz4_A           94 TIYSFPAPNVIL-TKPEVSEGTEVTVKCEAH--PR-AKVTL--NGVPAQPLG----------------------------  139 (265)
T ss_dssp             EEECCCCCEEEE-SCSEEETTCEEEEEEECC--TT-SEEEE--SSCSSSCCS----------------------------
T ss_pred             EEeCCCCceeec-CCceecCCCcEEEEEEcc--CC-CEEEE--CCEEccCCC----------------------------
Confidence            88733 334443 344457899999999998  55 89999  666552210                            


Q ss_pred             eccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeee--eeeeeeeecCCeEEEEEEeec
Q psy14542        171 LSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFE--KHRILNVKKDESVILPCSAQG  248 (371)
Q Consensus       171 ~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~--~~~~~~~~~g~~~~l~C~~~~  248 (371)
                       ..+.|.|..+..+| .|.|+|.+.+...|..........|.|.     .+|.+...  +.... +.+|+.+.|.|.+.|
T Consensus       140 -~~~~l~i~~~~~~~-~g~Y~C~a~n~~~g~~~~~s~~~~l~V~-----~~p~~~~~~~p~~~~-v~~g~~~~l~C~~~g  211 (265)
T 2oz4_A          140 -PRAQLLLKATPEDN-GRSFSCSATLEVAGQLIHKNQTRELRVL-----YGPRLDERDCPGNWT-WPENSQQTPMCQAWG  211 (265)
T ss_dssp             -SEECCEEECCGGGT-TEEEEEEEEEECSSSEEEEEEEEEEEEE-----EEEECCGGGSCSEEE-EETTCEECCCCCCEE
T ss_pred             -CcEEEEEccccccC-CceEEEEEEcCCCCCcccccccEEEEEE-----eCCccccccCCCccE-EcCCCeEEEEeECcc
Confidence             01467788888888 9999999986534554421112267776     55555433  23444 889999999999999


Q ss_pred             CCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecC
Q psy14542        249 NPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHG  311 (371)
Q Consensus       249 ~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  311 (371)
                      .|.|.+.|++++..+...       +.+.  .+..+|+|.|+|.|.|..|.....+.|.|.++
T Consensus       212 ~P~p~i~W~~~~~~~~~~-------g~~~--~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~p  265 (265)
T 2oz4_A          212 NPLPELKCLKDGTFPLPI-------GESV--TVTRDLEGTYLCRARSTQGEVTREVTVNVLSP  265 (265)
T ss_dssp             ESCCEEEEEETTTEECCT-------TSCE--ECCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCCCeEEEEECCcccCCC-------CcEE--EeehhhCeEEEEEEECCCCcEEEEEEEEEecC
Confidence            999999999999832222       2232  37789999999999999999999999998754

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.4e-31  Score=225.13  Aligned_cols=247  Identities=17%  Similarity=0.194  Sum_probs=170.6

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC------C--eeEEEEccCCcCCCeEEEEEEEcCCCC---eEEEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN------S--DEVLVLDRVQREDAGMYQCHVSADDDS---AQMSA   89 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~   89 (371)
                      +.+.+|++++|.|.+. +.    +.|++++..+...      .  ..+|.|.+++.+|+|.|+|.+.|..|.   ....+
T Consensus        10 ~~v~~G~~v~L~C~~~-~~----v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~   84 (289)
T 3mjg_X           10 LVLNVSSTFVLTCSGS-AP----VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRL   84 (289)
T ss_dssp             EECCTTCCEEEEEEES-SC----CEEEBTTBCCSEEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CCCEEE
T ss_pred             EEEeCCCcEEEEEecc-ce----EEEECCCCCcccceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCcEEeE
Confidence            7899999999999654 32    9999998765221      2  478999999999999999999987765   34566


Q ss_pred             EEEEecce-eeEecCCc---eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeC
Q psy14542         90 QVILGGEL-VEIASSNQ---VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED  165 (371)
Q Consensus        90 ~l~v~~~~-~~~~~~~~---~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~  165 (371)
                      .|.|.... +.+...+.   ..+.+|+.+.|.|.+. .+. +.++|++.+.........                    +
T Consensus        85 ~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~-~~v~w~~~~~~~~~~~~~--------------------~  142 (289)
T 3mjg_X           85 YIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQ-LVVTLHEKKGDVALPVPY--------------------D  142 (289)
T ss_dssp             EEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTT-SCEEEEESSCCSCCCCCE--------------------E
T ss_pred             EEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCC-ceEEEEeCCCCCccceee--------------------c
Confidence            66665221 22222222   3458999999999998 444 688888865211111000                    0


Q ss_pred             CceeEeccceEEEEEeecCCccceeEEEeeccccceee-eeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEE
Q psy14542        166 GKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASL-LSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPC  244 (371)
Q Consensus       166 ~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~-~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C  244 (371)
                      ..      ..+.    ...| .|.|+|.+.+. .+... ...   .+.|...   .+|.+...+.... +..|+.+.|.|
T Consensus       143 ~~------~~~~----~~~d-~G~Y~C~a~n~-~~~~~s~~~---~l~v~~~---~~p~i~~~~~~~~-v~~G~~v~L~C  203 (289)
T 3mjg_X          143 HQ------RGFS----GIFE-DRSYICKTTIG-DREVDSDAY---YVYRLQV---SSINVSVNAVQTV-VRQGENITLMC  203 (289)
T ss_dssp             TT------TEEE----ECCC-SSEEEEEEEET-TEEEECCCE---EEEECCC---CCCCCEEEESCSE-EETTSCEEEEE
T ss_pred             CC------cCee----eecc-CcEEEEEEEeC-CceeeeeeE---EEEecCC---CCCCcEEeCCcce-eEcCCCEEEEE
Confidence            00      1111    3568 99999999876 33322 222   4555422   3566666666555 89999999999


Q ss_pred             EeecCCCCceEEEeCCcccccCCce---------EEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542        245 SAQGNPLPTIKWYKQDSPVEESDRI---------QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       245 ~~~~~p~~~v~W~~~~~~~~~~~~~---------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      .+.+.|.+.+.|++++.........         ....+.|.|.++..+|+|.|+|.|.|..|....++.|.|...+.
T Consensus       204 ~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~  281 (289)
T 3mjg_X          204 IVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVES  281 (289)
T ss_dssp             EEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC-
T ss_pred             EECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEec
Confidence            9999999999999877654332111         12336899999999999999999999999999999999988776

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.98  E-value=3.7e-32  Score=259.07  Aligned_cols=300  Identities=19%  Similarity=0.255  Sum_probs=113.4

Q ss_pred             EEEecc--CcEEEEEEecCCCCCCeeEEEeC--CEEEeeC-------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEE-E
Q psy14542         21 VVVDVG--HRIELHCRVSPKRLSSAKAWLKD--GLVLRRN-------SDEVLVLDRVQREDAGMYQCHVSADDDSAQM-S   88 (371)
Q Consensus        21 ~~~~~G--~~v~l~C~~~~~~~~~~~~W~~~--~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~   88 (371)
                      +.+.+|  ++++|.|.+. + |...+.|+++  +..+...       ....|.|.+++.+|+|.|+|.+.+....... .
T Consensus       136 ~~v~~G~~~~v~L~C~~~-~-p~~~v~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~  213 (772)
T 3v2a_R          136 VYITENKNKTVVIPCLGS-I-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIM  213 (772)
T ss_dssp             EEEESSCCCEEEECCCCS-C-SSCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEEETTEEEECCE
T ss_pred             EEEecCCCCeEEEEccCC-C-CCcEEEEEecCCCccccCCCceeecCCCCCeEecCCChhhCeEEEEEEEECCceEEEEE
Confidence            678889  8999999654 3 6688999997  6655432       4567999999999999999999975432221 2


Q ss_pred             EEEEEec-ceeeEecCC--ceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEe
Q psy14542         89 AQVILGG-ELVEIASSN--QVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIE  164 (371)
Q Consensus        89 ~~l~v~~-~~~~~~~~~--~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~  164 (371)
                      +.+.+.. ..+.+...+  ...+.+|+.++|.|.+.+.+ +...+.|++++..+...........  . .          
T Consensus       214 ~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~--~-~----------  280 (772)
T 3v2a_R          214 YIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK--T-Q----------  280 (772)
T ss_dssp             EEEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC----------------
T ss_pred             EEEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeecccc--c-c----------
Confidence            3333331 233333333  23568999999999998642 2278999999887554321100000  0 0          


Q ss_pred             CCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeee---eeeeeeecCCeEE
Q psy14542        165 DGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEK---HRILNVKKDESVI  241 (371)
Q Consensus       165 ~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~---~~~~~~~~g~~~~  241 (371)
                      .+.........|.|.+++.+| +|.|+|.+.+. .+......   .|.|.     .+|.+....   .... +..|+.+.
T Consensus       281 ~~~~~~~~~~~L~i~~v~~~d-~G~Y~C~~~~~-~~~~~~~~---~l~V~-----~~p~~~~~~~~~~~~~-v~~G~~v~  349 (772)
T 3v2a_R          281 SGSEMKKFLSTLTIDGVTRSD-QGLYTCAASSG-LMTKKNST---FVRVH-----EKPFVAFGSGMESLVE-ATVGERVR  349 (772)
T ss_dssp             --CCCEEEEEEEEESSCCSTT-CSEEEEEEECS-SCEEEEEE---EEEEE-----CCCC---------------------
T ss_pred             ccccceEEEEEEEECcCCcCC-CeEEEEEEEcC-CcceeEEE---EEEEe-----CCCeeEeccCCCCcEE-EcCCCcEE
Confidence            000111123689999999999 99999999988 66655555   77777     455444322   2333 88999999


Q ss_pred             EEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCc--eeEEEEEEecCcccccccc
Q psy14542        242 LPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQYAHGKYHMLSSG  319 (371)
Q Consensus       242 l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~p~~~~~~~  319 (371)
                      |.|.+.++|.+.+.|+++|..+....++. ..+.|.|.++..+|+|.|+|.|.|..|..  +..+.|.|..+|.      
T Consensus       350 l~C~~~~~p~~~v~W~~~g~~l~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~------  422 (772)
T 3v2a_R          350 IPAKYLGYPPPEIKWYKNGIPLESNHTIK-AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQ------  422 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEeeeCCCeEEEEECCEeCCCCceEc-cceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCc------
Confidence            99999999999999999998887644333 34789999999999999999999998865  5567777887777      


Q ss_pred             eEEEEee--eeccccccccccccccceeeeeecCCeEEEeeeeecCCCCc-cccC
Q psy14542        320 ELIIHQV--DEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT-IKYR  371 (371)
Q Consensus       320 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-i~W~  371 (371)
                         +...  ..|..               .+.+|+.++|.|.+.|.|+|. |+|+
T Consensus       423 ---~~~~~~~~~~~---------------~~~~g~~~~l~C~~~g~p~p~~v~W~  459 (772)
T 3v2a_R          423 ---IGEKSLISPVD---------------SYQYGTTQTLTCTVYAIPPPHHIHWY  459 (772)
T ss_dssp             -------------------------------------------------------
T ss_pred             ---ccccccCCCcc---------------ccCCCCcEEEEeEeccCCCCcEEEEE
Confidence               3311  11111               367899999999999999996 9996

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.98  E-value=1.7e-30  Score=231.69  Aligned_cols=302  Identities=16%  Similarity=0.239  Sum_probs=191.1

Q ss_pred             EEEeccCcEEEEEEecCCC-CCCeeEEEeC--CEEEe----e--------------C----------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPKR-LSSAKAWLKD--GLVLR----R--------------N----------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~--~~~~~----~--------------~----------~~~~l~i~~~~~~   69 (371)
                      +.+.+|++++|.|.+.... +...+.|+|+  +..+.    .              .          ...+|.|.+++.+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   89 (444)
T 1igt_B           10 GLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRLKSE   89 (444)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCCCHH
Confidence            6899999999999765432 2567999984  22110    0              0          2468999999999


Q ss_pred             CCeEEEEEEEcCCCCe---EEEEEEEEec---ceeeEe-cCCceeeecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeC
Q psy14542         70 DAGMYQCHVSADDDSA---QMSAQVILGG---ELVEIA-SSNQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRN  141 (371)
Q Consensus        70 d~G~Y~C~~~~~~~~~---~~~~~l~v~~---~~~~~~-~~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~  141 (371)
                      |+|.|+|.+.+..+..   ...+.|.|..   .+|.+. ..+...+.+|+.++|.|.+.+. |.+..+.|++++..+...
T Consensus        90 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~  169 (444)
T 1igt_B           90 DTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVH  169 (444)
T ss_dssp             GCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEE
T ss_pred             HCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeE
Confidence            9999999999865441   2235677762   123332 2333334789999999999885 543499999988753110


Q ss_pred             CeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeec------
Q psy14542        142 SDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTE------  215 (371)
Q Consensus       142 ~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~------  215 (371)
                      ..     ....  ..|.|         ..  .+.|.|.++..+|  |.|+|.+.|. .+......   .+.+..      
T Consensus       170 ~~-----~~~~--~~~~~---------~~--~s~L~i~~~~~~d--g~Y~C~a~n~-~~~~~~~~---~i~~~~~~~~~~  225 (444)
T 1igt_B          170 TF-----PAVL--QSDLY---------TL--SSSVTVTSSTWPS--QSITCNVAHP-ASSTKVDK---KIEPRGPTIKPC  225 (444)
T ss_dssp             EC-----CCEE--ETTEE---------EE--EEEEEECSTTTTT--SCCEEEEEET-TTTEEEEE---ECCCCCCSCCCC
T ss_pred             ec-----Cccc--cCCcE---------EE--EEEEEEchhhcCC--CeEEEEEEeC-CCCcceEE---EeccCCCCcccC
Confidence            00     0000  01222         22  2568888877765  9999999998 55433332   332210      


Q ss_pred             -------chhccccceeeeeeeeee-eecCCeEEEEEEeecCC----CCceEEEeCCcccccCCce---E------Eecc
Q psy14542        216 -------NKRLLSAAKMFEKHRILN-VKKDESVILPCSAQGNP----LPTIKWYKQDSPVEESDRI---Q------RIGS  274 (371)
Q Consensus       216 -------~~~~~~p~~~~~~~~~~~-~~~g~~~~l~C~~~~~p----~~~v~W~~~~~~~~~~~~~---~------~~~~  274 (371)
                             .....+|.+...+..... +..|+.+.|.|.+.|.+    .+.+.|++++..+......   .      ...+
T Consensus       226 ~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~  305 (444)
T 1igt_B          226 PPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVS  305 (444)
T ss_dssp             CCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEE
T ss_pred             CccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEE
Confidence                   000124444333322221 47899999999999874    3689999999876543211   1      1235


Q ss_pred             eEEEeccCCCCCeEEEEEEEcCCCCceeEEEE----EEecCcccccccceEEEEeeeeccccccccccccccceeeeeec
Q psy14542        275 SLSISHVEESDSGVWNCVANNSEGQDKMQLFI----QYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKK  350 (371)
Q Consensus       275 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l----~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (371)
                      .|.|.++..+|+|.|+|.|.|..|.......+    .+..+|.         +. +..+...              .+..
T Consensus       306 ~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~---------v~-~~~~~~~--------------~~~~  361 (444)
T 1igt_B          306 ALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQ---------VY-VLPPPEE--------------EMTK  361 (444)
T ss_dssp             EEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCCCCCBCCE---------EE-EECCCGG--------------GTTS
T ss_pred             EEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccCCCCCCCE---------EE-EeCCChH--------------HccC
Confidence            79999999999999999999999876433333    3344555         44 2222111              2334


Q ss_pred             CCeEEEeeeeecC-CCC-ccccC
Q psy14542        351 DESVILPCSAQGN-PLP-TIKYR  371 (371)
Q Consensus       351 g~~~~l~C~~~g~-p~p-~i~W~  371 (371)
                      | .++|.|.+.|. |+| .|+|+
T Consensus       362 ~-~~~L~C~~~g~~P~~~~v~W~  383 (444)
T 1igt_B          362 K-QVTLTCMVTDFMPEDIYVEWT  383 (444)
T ss_dssp             S-EEEEEEEEEEEBSSCCEEEEE
T ss_pred             C-eEEEEEEEEeeeCCCCEEEEE
Confidence            5 59999999995 555 89995

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.97  E-value=6e-30  Score=229.97  Aligned_cols=309  Identities=14%  Similarity=0.169  Sum_probs=193.4

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeCC--E---EEe---------------eC----------CeeEE
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--L---VLR---------------RN----------SDEVL   61 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~--~---~~~---------------~~----------~~~~l   61 (371)
                      ....|.. +.+.+|++++|.|...... +...+.|||..  .   .+.               ..          ...+|
T Consensus         4 ~~~~p~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   82 (475)
T 1iga_A            4 LLEQSGA-EVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYM   82 (475)
T ss_pred             eeccCCc-EEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEE
Confidence            3344555 8899999999999765331 25679999842  1   110               00          23589


Q ss_pred             EEccCCcCCCeEEEEEEEcCCCC------eEEEEEEEEec---ceeeEecCCceeeecCCcEEEEEEecCCCC--CceEE
Q psy14542         62 VLDRVQREDAGMYQCHVSADDDS------AQMSAQVILGG---ELVEIASSNQVVVDVGHRIELHCRVSPKRL--SSAKA  130 (371)
Q Consensus        62 ~i~~~~~~d~G~Y~C~~~~~~~~------~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~~v~  130 (371)
                      .|.+++.+|+|.|.|.+.+..+.      ....+.|.|..   .+|.+...+.....+|+.++|.|.+.+.++  +..+.
T Consensus        83 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~g~~v~L~C~~~g~~P~~p~~v~  162 (475)
T 1iga_A           83 GLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVT  162 (475)
T ss_pred             EECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCccccCCCCeEEEEEEEeeecCCCceEEE
Confidence            99999999999999999987542      12345666652   234443332222368999999999998744  24999


Q ss_pred             EeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccce
Q psy14542        131 WLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGR  210 (371)
Q Consensus       131 W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~  210 (371)
                      |++++......     ..........|         .+...  +.|.|..+...| .|.|+|.+.|. .+. ....   .
T Consensus       163 W~~~~~~~~~~-----~~~~~~~~~~g---------~~~~~--s~L~i~~~~~~d-~g~Y~C~a~n~-~~~-~~~~---~  220 (475)
T 1iga_A          163 WSESGQGVTAR-----NFPPSQDASGD---------LYTTS--SQLTLPATQCLA-GKSVTCHVKHY-TNP-SQDV---T  220 (475)
T ss_pred             EcCCCcccceE-----eCCceecCCCC---------cEEEE--EEEEechhHcCC-CceEEEEEEEC-CCC-ceee---e
Confidence            99987432110     00000001222         22222  468888888899 99999999998 442 1122   2


Q ss_pred             eeeecch---------------hccccceeee-eeeeeeeecCCeEEEEEEeecCCC---CceEEEeCCcccccCCc---
Q psy14542        211 LSLTENK---------------RLLSAAKMFE-KHRILNVKKDESVILPCSAQGNPL---PTIKWYKQDSPVEESDR---  268 (371)
Q Consensus       211 l~v~~~~---------------~~~~p~~~~~-~~~~~~~~~g~~~~l~C~~~~~p~---~~v~W~~~~~~~~~~~~---  268 (371)
                      +.+.++.               ...+|.+... +.... +..|+.+.|.|.+.|.++   +.+.|  ++..+.....   
T Consensus       221 v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~-~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~  297 (475)
T 1iga_A          221 VPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALED-LLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPP  297 (475)
T ss_pred             EecccccCcccccccccccCCCCCCCcEEEEcCCChHH-hccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCc
Confidence            3321100               0013333222 22222 588999999999998754   68999  4443322110   


Q ss_pred             ------eEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE---ecCcccccccceEEEEeeeeccccccccccc
Q psy14542        269 ------IQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY---AHGKYHMLSSGELIIHQVDEKNKRLLSAAKM  339 (371)
Q Consensus       269 ------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (371)
                            .....+.|.|.++..+|+|.|+|.|.|..|.......|.+   ..+|.         +. +..+..        
T Consensus       298 ~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~---------v~-~~~~~~--------  359 (475)
T 1iga_A          298 ERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPE---------VH-LLPPPS--------  359 (475)
T ss_pred             eECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCCCCe---------EE-EECCCh--------
Confidence                  0113457999999999999999999999998655555533   34555         43 222211        


Q ss_pred             cccceeeeeecCCeEEEeeeeecCCC--CccccC
Q psy14542        340 FEKHRILNVKKDESVILPCSAQGNPL--PTIKYR  371 (371)
Q Consensus       340 ~~~~~~~~~~~g~~~~l~C~~~g~p~--p~i~W~  371 (371)
                            ..+.+|+.+.|.|.+.|++|  +.|+|+
T Consensus       360 ------~~v~~g~~~~L~C~~~g~~P~~~~v~W~  387 (475)
T 1iga_A          360 ------EELALNELVTLTCLARGFSPKDVLVRWL  387 (475)
T ss_pred             ------HHhccCCceEEEEEEeeeECCCCEEEEE
Confidence                  03568999999999999744  489996

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.97  E-value=9.8e-30  Score=213.23  Aligned_cols=219  Identities=20%  Similarity=0.332  Sum_probs=172.0

Q ss_pred             ceeeEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccc
Q psy14542         96 ELVEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG  174 (371)
Q Consensus        96 ~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~  174 (371)
                      .+|.+...+.. .+.+|+.++|.|.+.+.+. +.+.|++++..+.....+.+...               .      ...
T Consensus         4 ~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~-~~v~W~~~~~~~~~~~~~~~~~~---------------~------~~~   61 (284)
T 2rik_A            4 APPFFDLKPVSVDLALGESGTFKCHVTGTAP-IKITWAKDNREIRPGGNYKMTLV---------------E------NTA   61 (284)
T ss_dssp             CCCEEEECCCCEEEETTCCEEEEEEEESSSC-CEEEEEETTEECCSSSSEEEEEE---------------T------TEE
T ss_pred             CCCEEEccccceEecCCCcEEEEEEEEcCCC-CEEEEEECCEECcCCCcEEEEEc---------------C------CEE
Confidence            35556555544 4489999999999998876 89999999998765433221110               0      126


Q ss_pred             eEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCce
Q psy14542        175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTI  254 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v  254 (371)
                      .|.|.+++.+| .|.|+|.+.+. .+......   .|.|.     .+|.+.........+..|+.+.|.|.+.+.|.+.+
T Consensus        62 ~L~i~~v~~~d-~G~Y~C~~~n~-~g~~~~~~---~l~V~-----~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v  131 (284)
T 2rik_A           62 TLTVLKVTKGD-AGQYTCYASNV-AGKDSCSA---QLGVQ-----EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKV  131 (284)
T ss_dssp             EEEESSCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEE-----CCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEE
T ss_pred             EEEEecCCccc-CEEEEEEEEEC-CceEEEEE---EEEcc-----CCCcccccCCCceEecCCceEEEEEEEeeeCCCEE
Confidence            79999999999 99999999998 67666666   78887     56665544433333889999999999999999999


Q ss_pred             EEEeCCcccccCCceEE----ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcccccccceEEEEeeeecc
Q psy14542        255 KWYKQDSPVEESDRIQR----IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKN  330 (371)
Q Consensus       255 ~W~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~  330 (371)
                      .|++++..+....++..    ....|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.         +.  ..| 
T Consensus       132 ~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~---------~~--~~~-  199 (284)
T 2rik_A          132 LWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPV---------FR--KKP-  199 (284)
T ss_dssp             EEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCB---------CC--SCC-
T ss_pred             EEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCc---------ce--eCC-
Confidence            99999998877765542    235799999999999999999999999999999999998887         33  111 


Q ss_pred             ccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        331 KRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                                   ....+.+|+.+.|.|.+.|+|+|.++|+
T Consensus       200 -------------~~~~~~~g~~v~l~C~~~g~p~~~v~W~  227 (284)
T 2rik_A          200 -------------HPVETLKGADVHLECELQGTPPFQVSWH  227 (284)
T ss_dssp             -------------CCEEECTTCCEEEEEECBSSSCCEEEEE
T ss_pred             -------------CcceecCCCeEEEEEEEEecCCCEEEEE
Confidence                         1226779999999999999999999995

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.97  E-value=4.8e-30  Score=229.59  Aligned_cols=306  Identities=14%  Similarity=0.233  Sum_probs=185.9

Q ss_pred             CCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeC--CE---EEe---------------eC----------CeeEEEEcc
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKD--GL---VLR---------------RN----------SDEVLVLDR   65 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~--~~---~~~---------------~~----------~~~~l~i~~   65 (371)
                      |.. +.+.+|++++|.|.+.... ....+.|+|+  +.   .+.               ..          ...+|.|.+
T Consensus         7 ~~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (457)
T 1hzh_H            7 SGA-EVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS   85 (457)
T ss_dssp             CCC-EEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CCc-eEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECC
Confidence            444 7899999999999765331 2567999983  21   110               00          235899999


Q ss_pred             CCcCCCeEEEEEEEcCCC------------CeEEEEEEEEec---ceeeEe-cCCceeeecCCcEEEEEEecCCCC-Cce
Q psy14542         66 VQREDAGMYQCHVSADDD------------SAQMSAQVILGG---ELVEIA-SSNQVVVDVGHRIELHCRVSPKRL-SSA  128 (371)
Q Consensus        66 ~~~~d~G~Y~C~~~~~~~------------~~~~~~~l~v~~---~~~~~~-~~~~~~~~~g~~v~l~C~~~~~~~-~~~  128 (371)
                      ++.+|+|.|+|.+.+..+            .......|.|..   .+|.+. ..+...+.+|+.++|.|.+.+..+ ++.
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~  165 (457)
T 1hzh_H           86 LRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT  165 (457)
T ss_dssp             CCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCE
T ss_pred             CCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCCCeE
Confidence            999999999999998754            122345666653   133333 233333478999999999988733 379


Q ss_pred             EEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeecc
Q psy14542        129 KAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNR  208 (371)
Q Consensus       129 v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~  208 (371)
                      +.|++++..+.... .....     ...|         .+..  .+.|.|.++..+|  |.|+|.+.|. .+......  
T Consensus       166 v~W~k~~~~~~~~~-~~~~~-----~~~~---------~~~~--~s~L~i~~~~~~d--G~Y~C~a~n~-~~~~~~~~--  223 (457)
T 1hzh_H          166 VSWNSGALTSGVHT-FPAVL-----QSSG---------LYSL--SSVVTVPSSSLGT--QTYICNVNHK-PSNTKVDK--  223 (457)
T ss_dssp             EEETTTTBCTTEEE-EEEEE-----CTTS---------CEEE--EEEEEECSGGGGT--SCCEEEEEEG-GGTEEEEE--
T ss_pred             EEEEeCCEeccceE-cCceE-----CCCC---------CEEE--EEEEEecccccCC--ceEEEEEEeC-CCCcceeE--
Confidence            99999986432110 00000     1112         2222  1578888887755  9999999997 54433322  


Q ss_pred             ceeeeecch------------hccccceeeeeeeee-eeecCCeEEEEEEeecCCCC----ceEEEeCCcccccCCc---
Q psy14542        209 GRLSLTENK------------RLLSAAKMFEKHRIL-NVKKDESVILPCSAQGNPLP----TIKWYKQDSPVEESDR---  268 (371)
Q Consensus       209 ~~l~v~~~~------------~~~~p~~~~~~~~~~-~~~~g~~~~l~C~~~~~p~~----~v~W~~~~~~~~~~~~---  268 (371)
                       .+.+....            ...+|.+...+.... .+..|+.+.|.|.+.|.|++    .+.|++++..+.....   
T Consensus       224 -~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~  302 (457)
T 1hzh_H          224 -KAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR  302 (457)
T ss_dssp             -ECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEE
T ss_pred             -EecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccc
Confidence             33322100            001344322221111 15679999999999987553    8999999987654321   


Q ss_pred             eEEecceEEEec---cCCCC---CeEEEEEEEcCCCCceeEEEEE----EecCcccccccceEEEEeeeecccccccccc
Q psy14542        269 IQRIGSSLSISH---VEESD---SGVWNCVANNSEGQDKMQLFIQ----YAHGKYHMLSSGELIIHQVDEKNKRLLSAAK  338 (371)
Q Consensus       269 ~~~~~~~l~i~~---~~~~d---~G~Y~C~a~n~~g~~~~~~~l~----v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (371)
                      ....++.+.+..   +...|   +|.|+|.|.|..+.......+.    +..+|.         +. +..+...      
T Consensus       303 ~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~---------v~-~~~~~~~------  366 (457)
T 1hzh_H          303 EEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQ---------VY-TLPPSRD------  366 (457)
T ss_dssp             EECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCE---------EE-EECCCGG------
T ss_pred             eecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCe---------EE-EECCCcc------
Confidence            112234444442   23444   9999999998776654444443    344555         44 2222211      


Q ss_pred             ccccceeeeeecCCeEEEeeeeecCCCC--ccccC
Q psy14542        339 MFEKHRILNVKKDESVILPCSAQGNPLP--TIKYR  371 (371)
Q Consensus       339 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p--~i~W~  371 (371)
                              .+..|+ ++|.|.+.|+|+|  .|+|+
T Consensus       367 --------~~~~~~-~~l~C~~~g~~p~~~~v~W~  392 (457)
T 1hzh_H          367 --------ELTKNQ-VSLTCLVKGFYPSDIAVEWE  392 (457)
T ss_dssp             --------GGGSSE-EEEEEEEEEEBSSCCEEEEE
T ss_pred             --------ccCCCc-EEEEEEEEeEECCCCEEEEE
Confidence                    233555 9999999997654  89995

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.97  E-value=1.2e-29  Score=220.23  Aligned_cols=250  Identities=14%  Similarity=0.177  Sum_probs=173.2

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEE
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI   92 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~   92 (371)
                      +.+.|..  .+.+|++++|.|.+ .+.|.+.+.|++++..+.. ....|.|.+++.+|+|.|+|.+.+..+.....+.|.
T Consensus       100 ~~~~~~~--~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~  175 (363)
T 1wio_A          100 LTANSDT--HLLQGQSLTLTLES-PPGSSPSVQCRSPRGKNIQ-GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIV  175 (363)
T ss_dssp             EEESSCS--SEESBSCEEEEEEC-CTTCCCCEEEECSSSCEEE-ESSEEEECSBCGGGCEECEEEEEETTEEEEECCEEC
T ss_pred             CCCCCce--EEecCCCEEEEEEc-CCCCCCeEEEEcCCCcccc-cceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEE
Confidence            4445543  67899999999955 4478889999998766544 667899999999999999999998766556666666


Q ss_pred             EecceeeEecCCceeeecCCcEEEEEEecC-----CCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEE--eC
Q psy14542         93 LGGELVEIASSNQVVVDVGHRIELHCRVSP-----KRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHI--ED  165 (371)
Q Consensus        93 v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-----~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~--~~  165 (371)
                      |. .++...  ....+.+|+.+.|.|.+.+     .|. +.+.|++++..+.... ..+...      .+.+....  .+
T Consensus       176 v~-~~p~~~--~~~~~~~G~~v~l~C~~~~~~~~~~P~-p~i~W~~~g~~~~~~~-~~~~~~------~~~~~~~~~~~~  244 (363)
T 1wio_A          176 VL-AFQKAS--SIVYKKEGEQVEFSFPLAFTVEKLTGS-GELWWQAERASSSKSW-ITFDLK------NKEVSVKRVTQD  244 (363)
T ss_dssp             EE-CCSCSE--EEEEEETBCCEEEECCCCCCCCSSCEE-EEEEEEESSCCCCCCE-EEEEEC------SSCEEEEEEECS
T ss_pred             Ee-cCCCCC--CceEEecCCEEEEEEEEecccccCCCc-eeEEEecCCCCccceE-EEEEec------CCeeeccccccc
Confidence            66 222211  2233478999999998877     445 8999999988765420 000000      00010000  00


Q ss_pred             CceeEec--cceEEEEEeecCCccceeEEEeecccc-ceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEE
Q psy14542        166 GKYHMLS--SGELIIHQVDESDRYRSYQCRGVNKLT-GASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVIL  242 (371)
Q Consensus       166 ~~~~~~~--~~~l~i~~~~~~d~~g~y~C~~~~~~~-~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l  242 (371)
                      .......  ...|.|.++..+| +|.|+|.+.|... |.....+   .|.|.                   ...|+.+.|
T Consensus       245 ~~~~~~~~~~~~L~i~~v~~~d-~G~Y~C~a~n~~~~g~~~~~~---~l~V~-------------------~v~g~~~~l  301 (363)
T 1wio_A          245 PKLQMGKKLPLHLTLPQALPQY-AGSGNLTLALEAKTGKLHQEV---NLVVM-------------------RATQLQKNL  301 (363)
T ss_dssp             SCCBCCSSSSCEEEESSBCGGG-CEEEEEEECBTTTTCCEEEEE---EEEEE-------------------EECCCSSSE
T ss_pred             hhhhcccCCceEEEEccCCcCc-CcEEEEEEEEhhhcCeEEEEE---eEEEE-------------------EecCCCeeE
Confidence            0000011  2489999999999 9999999998721 3333333   45444                   112788999


Q ss_pred             EEEeecCCCCc--eEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        243 PCSAQGNPLPT--IKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       243 ~C~~~~~p~~~--v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      .|.+.+.|.|.  +.|++++..+..+       +.|.|.++..+|+|.|+|.|.|. |....+..|.|
T Consensus       302 ~C~~~g~p~p~~~i~W~~~~~~~~~~-------~~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~~V  361 (363)
T 1wio_A          302 TCEVWGPTSPKLMLSLKLENKEAKVS-------KREKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKV  361 (363)
T ss_dssp             EEEEESSCCTTCCEEEECSSSSCSEE-------ESSSEEEESSCCSEEEEEEECSS-SSCCEEEEEEE
T ss_pred             EEEEccccCCCccEEEEeCCCceeee-------eeeeeeeeccccceeEEEEEecC-CeEEEecceEe
Confidence            99999999888  9999999887643       45778999999999999999964 55555555555

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.97  E-value=6.7e-30  Score=227.61  Aligned_cols=280  Identities=15%  Similarity=0.205  Sum_probs=183.1

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCC-eeEEEeCCEEEeeC----------------CeeEEEEccCCcCCCe
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSS-AKAWLKDGLVLRRN----------------SDEVLVLDRVQREDAG   72 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~-~~~W~~~~~~~~~~----------------~~~~l~i~~~~~~d~G   72 (371)
                      +|.+.+.+.. ....+|+.+.|.|.+....|.+ .+.|+|+|..+...                ....|.|.+++.+|+|
T Consensus       116 ~P~v~~~~~~-~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  194 (438)
T 1qgc_4          116 APTVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHN  194 (438)
T ss_dssp             CCEEEEECCC-HHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCC
T ss_pred             CCEEEecCCC-hhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCC
Confidence            5667665554 3445788999999766556766 89999999887542                1347999999999999


Q ss_pred             EEEEEEEcCCCCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCC-CceEEEeeC--CEEeeeCCeeEEEEc
Q psy14542         73 MYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRL-SSAKAWLKD--GLVLRRNSDEVLVLD  149 (371)
Q Consensus        73 ~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~--~~~~~~~~~~~~~~~  149 (371)
                      .|+|.+.|..+.......+.+....+.+.......+.+|+.++|.|.+.+.+. .+.+.|+++  +..+...    ..+.
T Consensus       195 ~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~----~~~~  270 (438)
T 1qgc_4          195 SYTCEATHKTSTSPIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWV----ATIS  270 (438)
T ss_dssp             EEEEEEEETTCSSCEEEEEETTC-CCEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEE----EEEC
T ss_pred             eEEEEEEecccCCceecccccccceeEEecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEE----EEEe
Confidence            99999999877654444443321223333334445689999999999998872 279999996  4433210    0000


Q ss_pred             c------cCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccc-----eeeeeeccceeeeecchh
Q psy14542        150 R------VQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTG-----ASLLSVNRGRLSLTENKR  218 (371)
Q Consensus       150 ~------~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~-----~~~~~~~~~~l~v~~~~~  218 (371)
                      .      ......+.|........    ....|.|.+++.+| +|.|+|.+.|. .+     ......   .+.|.....
T Consensus       271 ~~~~~~~~~~~~~~r~~~~~~~~~----~~~~L~I~~v~~~D-~G~Y~C~a~n~-~~~~~~~~~~~~~---~l~V~~~~~  341 (438)
T 1qgc_4          271 SGGTYTYYPDSVKGRFTISRDNAK----NTLYLQMSSLRSAD-TAMYYCVRRED-GGDEGFAYWGQGT---VVTVSAAKT  341 (438)
T ss_dssp             TTSCCEECCGGGTTTEEEEEETTT----TEEEEEECSCCGGG-CCEEEEEECCS-SSCCCCCSBCCCE---EEEECSSCC
T ss_pred             ecCCceecCcccCCcEEEEeecCC----CeEEEEECCCChhh-CEEEEEEEEcc-CCCccceeeCCCE---EEEEecCCC
Confidence            0      00001122211111100    12479999999999 99999999984 22     111222   555553211


Q ss_pred             ccccceeeeeeeeeeeecCCeEEEEEEeecC-CCC-ceEEEeCCcccccC--CceE-----EecceEEEeccCCCCCeEE
Q psy14542        219 LLSAAKMFEKHRILNVKKDESVILPCSAQGN-PLP-TIKWYKQDSPVEES--DRIQ-----RIGSSLSISHVEESDSGVW  289 (371)
Q Consensus       219 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~--~~~~-----~~~~~l~i~~~~~~d~G~Y  289 (371)
                       .+|.+........ +..|+.++|.|.+.|. |.+ .+.|+++|..+...  ....     ...+.|.|.++..+| |.|
T Consensus       342 -~~P~v~~~~~~~~-~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y  418 (438)
T 1qgc_4          342 -TPPSVYPLAPGSA-AAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETV  418 (438)
T ss_dssp             -BCCEEEEECCCGG-GCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCCEEETTEEEEEEEEEEEEEHHHH-SCC
T ss_pred             -CCCeEEEcCcccc-cccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCccccCCcEEEEEEEEEehhhcCC-ceE
Confidence             3444444333334 6789999999999997 877 89999999876532  1111     112368999998889 999


Q ss_pred             EEEEEcCCCCceeEEEE
Q psy14542        290 NCVANNSEGQDKMQLFI  306 (371)
Q Consensus       290 ~C~a~n~~g~~~~~~~l  306 (371)
                      +|.|.|..|.......|
T Consensus       419 ~C~a~n~~g~~~~~~~i  435 (438)
T 1qgc_4          419 TCNVAHPASSTKVDKKI  435 (438)
T ss_dssp             EEEEEEGGGTEEEEEEC
T ss_pred             EEEEEeCCCCcceeeec
Confidence            99999999987666554

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.97  E-value=1.1e-31  Score=238.67  Aligned_cols=302  Identities=12%  Similarity=0.193  Sum_probs=189.2

Q ss_pred             EEEeccCcEEEEEEecCCC-CCCeeEEEeC--CEE---Eee---------------C----------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPKR-LSSAKAWLKD--GLV---LRR---------------N----------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~--~~~---~~~---------------~----------~~~~l~i~~~~~~   69 (371)
                      +.+.+|++++|.|.+.... +.+.+.|+|+  +..   +..               .          ...+|.|.+++.+
T Consensus         9 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   88 (434)
T 1igy_B            9 ELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSLTSD   88 (434)
T ss_dssp             CEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSBCGG
T ss_pred             eEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCCChH
Confidence            7899999999999765431 3567999985  221   100               0          2347999999999


Q ss_pred             CCeEEEEEEEcCCCCeEEEEEEEEec---ceeeEe-cCCceeeecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCee
Q psy14542         70 DAGMYQCHVSADDDSAQMSAQVILGG---ELVEIA-SSNQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDE  144 (371)
Q Consensus        70 d~G~Y~C~~~~~~~~~~~~~~l~v~~---~~~~~~-~~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~  144 (371)
                      |+|.|+|.+.+..+.......|.|..   .+|.+. ..+...+.+|+.++|.|.+.+. |.+..+.|++++..+...   
T Consensus        89 D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~---  165 (434)
T 1igy_B           89 DSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH---  165 (434)
T ss_dssp             GCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEE---
T ss_pred             HCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeE---
Confidence            99999999988544334445677752   223333 2333334789999999999886 442499999988642110   


Q ss_pred             EEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecc-------h
Q psy14542        145 VLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTEN-------K  217 (371)
Q Consensus       145 ~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~-------~  217 (371)
                        ......  ..|.|.         .  .+.|.|.++..+|  |.|+|.+.|. .+......   .+.+...       .
T Consensus       166 --~~~~~~--~~~~~~---------~--~s~L~i~~~~~~d--g~Y~C~a~n~-~~~~~~~~---~~~~~~~~~~v~~~~  224 (434)
T 1igy_B          166 --TFPAVL--QSDLYT---------L--SSSVTVPSSPRPS--ETVTCNVAHP-ASSTKVDK---KIVPRDCGCKPCICT  224 (434)
T ss_dssp             --ECCCEE--CSSCEE---------E--EEEEEEETTTTTS--SCCEEEEECT-TTTCCEEE---ECCCCCCCCCCCCCC
T ss_pred             --ecCcee--cCCcEE---------E--EEEEEEcchhcCC--CcEEEEEEeC-CCCcccee---eccCCCCCCccccCC
Confidence              000000  113222         2  1568888877765  9999999998 55432222   3322100       0


Q ss_pred             hccccceeeeeeeee-eeecCCeEEEEEEeecCC----CCceEEEeCCcccccCCce---------EEecceEEEeccCC
Q psy14542        218 RLLSAAKMFEKHRIL-NVKKDESVILPCSAQGNP----LPTIKWYKQDSPVEESDRI---------QRIGSSLSISHVEE  283 (371)
Q Consensus       218 ~~~~p~~~~~~~~~~-~~~~g~~~~l~C~~~~~p----~~~v~W~~~~~~~~~~~~~---------~~~~~~l~i~~~~~  283 (371)
                      ....|.+...+.... .+..|+.+.|.|.+.|.+    .+.|.|++++..+......         ....+.|.|..+..
T Consensus       225 ~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  304 (434)
T 1igy_B          225 VPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDW  304 (434)
T ss_dssp             CSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHH
T ss_pred             CCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHc
Confidence            000133322222111 167899999999999874    3589999999876432111         01235799999999


Q ss_pred             CCCeEEEEEEEcCCCCcee--EEEE--EEecCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeee
Q psy14542        284 SDSGVWNCVANNSEGQDKM--QLFI--QYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCS  359 (371)
Q Consensus       284 ~d~G~Y~C~a~n~~g~~~~--~~~l--~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~  359 (371)
                      +|+|.|+|.|.|..|....  .+.+  .+..+|.         +. +..+..               ....|+.++|.|.
T Consensus       305 ~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~---------v~-~~~~~~---------------~~~~~~~~~L~C~  359 (434)
T 1igy_B          305 LNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQ---------VY-TIPPPK---------------EQMAKDKVSLTCM  359 (434)
T ss_dssp             HHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCCC---------CE-EECCCS---------------SSSSSSEEEEEEE
T ss_pred             cCCCcEEEEEECCCCCCceeEEEeccCCCCcCCE---------EE-EECCCH---------------HHhcCCcEEEEEE
Confidence            9999999999999886532  3322  2334555         33 121111               1235778999999


Q ss_pred             eecCCCC--ccccC
Q psy14542        360 AQGNPLP--TIKYR  371 (371)
Q Consensus       360 ~~g~p~p--~i~W~  371 (371)
                      +.|++|+  .|+|+
T Consensus       360 ~~g~~P~~~~v~W~  373 (434)
T 1igy_B          360 ITDFFPEDITVEWQ  373 (434)
T ss_dssp             EEEEBCSCEEEEEE
T ss_pred             EEeeECCCeEEEEE
Confidence            9996443  89995

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.96  E-value=6.5e-28  Score=204.26  Aligned_cols=247  Identities=16%  Similarity=0.211  Sum_probs=179.0

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEEE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQCH   77 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~   77 (371)
                      .+|.+...|.. ..+.+|+.++|.|.+ .+.|.+.+.|++++..+...           ...+|.|.+++.+|+|.|+|.
T Consensus         3 ~~P~~~~~p~~-~~v~~G~~v~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~   80 (305)
T 2nzi_A            3 MAPHFKEELRN-LNVRYQSNATLVCKV-TGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR   80 (305)
T ss_dssp             CCCEEEECCCC-EEECTTCCEEEEEEE-ECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEE
T ss_pred             CCCeeeecccc-eEEeCCCcEEEEEEE-eCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEE
Confidence            46888888887 999999999999965 56778899999999877543           234899999999999999999


Q ss_pred             EEcCCCCeEEEEEEEEecceeeEecC------CceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEccc
Q psy14542         78 VSADDDSAQMSAQVILGGELVEIASS------NQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRV  151 (371)
Q Consensus        78 ~~~~~~~~~~~~~l~v~~~~~~~~~~------~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~  151 (371)
                      +.+..+.....+.|.|. .++.+...      ....+..|+.+.|.|.+.+.+. +.+.|++++..+.....+.+...  
T Consensus        81 a~n~~g~~~~~~~l~V~-~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~i~W~~~~~~~~~~~~~~~~~~--  156 (305)
T 2nzi_A           81 ATNQGGSVSGTASLEVE-VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPD-PVITWQKGQDLIDNNGHYQVIVT--  156 (305)
T ss_dssp             EEETTEEEEEEEEEEEC-EEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESC-CEEEEEESSSBCCSSSSCEEEEC--
T ss_pred             EEcCCCCccceEEEEEe-cCCccCCCccccccccEEecCCCEEEEEEEECCCCC-CEEEEEECCEECCCCCcEEEEEc--
Confidence            99988887888888887 45544332      2334478999999999998887 89999999887654432221110  


Q ss_pred             CcCCCeeEEEEEeCCceeEeccceEEEEE-eecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeee
Q psy14542        152 QREDAGMYQCHIEDGKYHMLSSGELIIHQ-VDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHR  230 (371)
Q Consensus       152 ~~~~~g~y~~~~~~~~~~~~~~~~l~i~~-~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~  230 (371)
                                   .      ....|.|.+ +...| .|.|+|.+.|. .|......   .+.|...+  .+|...   . 
T Consensus       157 -------------~------~~~~l~i~~~~~~~d-~G~Y~C~a~N~-~G~~~~~~---~l~v~~~P--~~p~~~---~-  206 (305)
T 2nzi_A          157 -------------R------SFTSLVFPNGVERKD-AGFYVVCAKNR-FGIDQKTV---ELDVADVP--DPPRGV---K-  206 (305)
T ss_dssp             -------------S------SEEEEEETTCCCSTT-CEEEEEEEEET-TEEEEEEE---EEEEEBCC--CCCEEE---E-
T ss_pred             -------------C------CceEEEEecCCccCc-cEEEEEEEEeC-CCceeeEE---EEEEecCC--CCCCCc---e-
Confidence                         0      125788988 99999 99999999999 77776666   77776321  122111   0 


Q ss_pred             eeeeecCCeEEE--------------EEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcC
Q psy14542        231 ILNVKKDESVIL--------------PCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNS  296 (371)
Q Consensus       231 ~~~~~~g~~~~l--------------~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  296 (371)
                      .. ...+..+.|              .|.+...+.+...|.+.+..         ....+.|.++...+.|.|+|.|.|.
T Consensus       207 ~~-~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~~~~~w~~~~~~---------~~~~~~i~~l~~~~~y~~~~~A~N~  276 (305)
T 2nzi_A          207 VS-DVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQA---------RETRYTVINLFGKTSYQFRVIAENK  276 (305)
T ss_dssp             EE-SCCSSCEEEEEECCSCCSBSCEEEEEEEEEETTSCCEEEEEEE---------SSSEEEECSCCSSCEEEEEEEEEET
T ss_pred             ee-eccCCEEEEEEcCCccCCCCceeEEEEEEecCCCCccEECccc---------cCceEEecCCCCCCeEEEEEEEEeC
Confidence            00 122334444              44444444445556543322         2467999999999999999999999


Q ss_pred             CCCce
Q psy14542        297 EGQDK  301 (371)
Q Consensus       297 ~g~~~  301 (371)
                      .|...
T Consensus       277 ~G~~~  281 (305)
T 2nzi_A          277 FGLSK  281 (305)
T ss_dssp             TEECC
T ss_pred             CcccC
Confidence            98754

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.96  E-value=3.7e-28  Score=205.65  Aligned_cols=224  Identities=23%  Similarity=0.364  Sum_probs=157.4

Q ss_pred             ceeeEecCCcee-eecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccc
Q psy14542         96 ELVEIASSNQVV-VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG  174 (371)
Q Consensus        96 ~~~~~~~~~~~~-~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~  174 (371)
                      .+|.+...+... +.+|+.++|.|.+.+.+. +.+.|++++..+...........               ++     ...
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~-~~i~W~k~g~~i~~~~~~~~~~~---------------~~-----~~~   63 (304)
T 2yd9_A            5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPK-PRVTWNKKGKKVNSQRFETIEFD---------------ES-----AGA   63 (304)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSC-CEEEEC-------CTTEEEEEET---------------TT-----TEE
T ss_pred             cCCeeeecCCceEecCCCeEEEEEEEEEeCC-CeEEEEECCEECCCCceEEEEec---------------CC-----Cce
Confidence            455666555444 489999999999998877 89999999987754321111100               00     015


Q ss_pred             eEEEEEeec-CCccceeEEEeeccccceeeeeeccceeeeecchhc--cccceeeeeeeeeeeecCCeEEEEEEeecCCC
Q psy14542        175 ELIIHQVDE-SDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRL--LSAAKMFEKHRILNVKKDESVILPCSAQGNPL  251 (371)
Q Consensus       175 ~l~i~~~~~-~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~--~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~  251 (371)
                      .|.|.++.. +| +|.|+|.+.+. .|......   .|.|......  ..|.+...+.... +..|+.+.|.|.+.|.|.
T Consensus        64 ~L~i~~~~~~~D-~G~Y~C~a~n~-~g~~~~~~---~l~V~~~~~~p~~~p~i~~~~~~~~-v~~g~~v~l~C~~~g~p~  137 (304)
T 2yd9_A           64 VLRIQPLRTPRD-ENVYECVAQNS-VGEITVHA---KLTVLREDQLPSGFPNIDMGPQLKV-VERTRTATMLCAASGNPD  137 (304)
T ss_dssp             EEEECSCCTTTT-CSEEEEEEECS-SCEECCEE---EEEEECGGGCCTTCCEEEECCCCEE-EETTSCEEECCEEECSSC
T ss_pred             EEEEecccccCC-CeEEEEEEECC-CCeEEEEE---EEEEeccccCCCCCCeeecCCccEE-EeCCCeEEEEEECccCCC
Confidence            799999998 99 99999999998 67655555   7777643211  1255555555555 889999999999999999


Q ss_pred             CceEEEeCCcccccCC---ceE-EecceEEEeccCCCCCeEEEEEEEcCCCCceeE-EEEEEe---cCcccccccceEEE
Q psy14542        252 PTIKWYKQDSPVEESD---RIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ-LFIQYA---HGKYHMLSSGELII  323 (371)
Q Consensus       252 ~~v~W~~~~~~~~~~~---~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~---~~p~~~~~~~~~~~  323 (371)
                      +.+.|++++..+....   ++. ..++.|.|.++..+|+|.|+|.|.|..|..... ..|.|.   .+|.         +
T Consensus       138 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~---------~  208 (304)
T 2yd9_A          138 PEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPR---------F  208 (304)
T ss_dssp             CEEEEEETTEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEE---------E
T ss_pred             CeEEEEECCEECcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCc---------E
Confidence            9999999998876542   232 345689999999999999999999999876432 444443   2343         3


Q ss_pred             EeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        324 HQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                      .  ..|.              ...+.+|+.++|.|.+.|.|+|.|+|+
T Consensus       209 ~--~~~~--------------~~~v~~G~~v~l~C~~~g~p~p~v~W~  240 (304)
T 2yd9_A          209 S--ILPM--------------SHEIMPGGNVNITCVAVGSPMPYVKWM  240 (304)
T ss_dssp             E--ECCC--------------CBCCCTTCCEEEEEEEEEESCCEEEEE
T ss_pred             E--ecCC--------------ceEEcCCCeEEEEEEEeeeCCCEEEEE
Confidence            3  1222              126789999999999999999999996

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.96  E-value=1.1e-27  Score=201.48  Aligned_cols=214  Identities=19%  Similarity=0.249  Sum_probs=157.9

Q ss_pred             eeeecCCcEEEEEEecCCCCCceEEEee-CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542        106 VVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES  184 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~  184 (371)
                      ..+.+|+.++|.|.+.+.++.+.+.|++ ++..+............                   ......|.|.+++.+
T Consensus        12 ~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~-------------------~~~~~~L~i~~~~~~   72 (291)
T 1qz1_A           12 GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWN-------------------DDDSSTLTIYNANID   72 (291)
T ss_dssp             EEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEE-------------------ETTEEEEEECSCCGG
T ss_pred             ceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEc-------------------CCCeEEEEEecCCCC
Confidence            3458999999999999876448999999 67665533211100000                   001268999999999


Q ss_pred             CccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccc
Q psy14542        185 DRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVE  264 (371)
Q Consensus       185 d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~  264 (371)
                      | +|.|+|.+.+...+......   .+.|.     .+|.+...+.... +..|+.+.|.|.+.+.|.+.+.|++++..+.
T Consensus        73 D-~G~Y~C~~~n~~g~~~~~~~---~l~v~-----~~~~~~~~~~~~~-~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~  142 (291)
T 1qz1_A           73 D-AGIYKCVVTAEDGTQSEATV---NVKIF-----QKLMFKNAPTPQE-FKEGEDAVIVCDVVSSLPPTIIWKHKGRDVI  142 (291)
T ss_dssp             G-CEEEEEEEECTTSCEEEEEE---EEEEE-----CCSEEEECCSSEE-EETTSCEEECCEEECSSCCEEEEEETTSCSS
T ss_pred             C-CEEEEEEEEcCCCCeeEEEE---EEEee-----ccccccCCCCccc-ccCCCeEEEEEEeccCCCCEEEEEECCEEcc
Confidence            9 99999999998323333444   66666     5666666666666 8999999999999999999999999998775


Q ss_pred             cC--CceE-EecceEEEeccCCCCCeEEEEEEEcCCCCc--eeEEEEEEecCcccccccceEEEEeeeeccccccccccc
Q psy14542        265 ES--DRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKM  339 (371)
Q Consensus       265 ~~--~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (371)
                      ..  .++. ..++.|.|.++..+|+|.|+|.|.|..+..  ...+.|.|..+|.         +.  ..+.         
T Consensus       143 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~---------~~--~~~~---------  202 (291)
T 1qz1_A          143 LKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPT---------VQ--ARQS---------  202 (291)
T ss_dssp             TTCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEE---------EE--ESCS---------
T ss_pred             cCCCceEEEccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCc---------cc--cccc---------
Confidence            43  2332 345689999999999999999999976543  4566777777777         44  1111         


Q ss_pred             cccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        340 FEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       340 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                         +....+.+|+.+.|.|.+.|.|+|.++|+
T Consensus       203 ---~~~~~~~~g~~v~l~C~~~g~p~p~i~W~  231 (291)
T 1qz1_A          203 ---IVNATANLGQSVTLVCDADGFPEPTMSWT  231 (291)
T ss_dssp             ---EEEEETTSCCCEEEEEEEEEESCCEEEEE
T ss_pred             ---ccccccccCceEEEEEEEEEeCCCcEEEE
Confidence               11226779999999999999999999995

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.96  E-value=7.1e-29  Score=211.77  Aligned_cols=264  Identities=16%  Similarity=0.197  Sum_probs=166.0

Q ss_pred             cceEEEeCCCcEEEecc--CcEEEEEEecCCCC-CCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCe
Q psy14542         10 SLSIEMSPSGQVVVDVG--HRIELHCRVSPKRL-SSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAG   72 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G--~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G   72 (371)
                      +|.+.+.+.. .....|  +.++|.|.+....| .+.|.|+|+|..+...              ....|.|.++..+|+|
T Consensus         7 ~P~v~~~~~~-~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g   85 (323)
T 2wqr_A            7 PPTVKILQSS-CDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDR   85 (323)
T ss_dssp             CCCCEEEEEC-CCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTC
T ss_pred             CCEEEEeCCC-hHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCC
Confidence            4556665544 223344  69999997655444 5789999999876532              1235778888888999


Q ss_pred             EEEEEEEcCCCCeEEEEEEEE--ecceeeE-ecCCce-eeecCCcEEEEEEecCCCCCc---eEEEeeCC-EEeeeCCee
Q psy14542         73 MYQCHVSADDDSAQMSAQVIL--GGELVEI-ASSNQV-VVDVGHRIELHCRVSPKRLSS---AKAWLKDG-LVLRRNSDE  144 (371)
Q Consensus        73 ~Y~C~~~~~~~~~~~~~~l~v--~~~~~~~-~~~~~~-~~~~g~~v~l~C~~~~~~~~~---~v~W~~~~-~~~~~~~~~  144 (371)
                      .|+|.+.+..+.....+.+.+  ....+.+ ...+.. .+.+|+.++|.|.+.+.++.+   .+.|++++ ..+..... 
T Consensus        86 ~Y~C~a~n~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~-  164 (323)
T 2wqr_A           86 TYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTR-  164 (323)
T ss_dssp             CEEEEEEETTEEEEEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCC-
T ss_pred             cEEEEEEeCCCCcceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccC-
Confidence            999999987654433332211  1112222 333322 247899999999998764324   89999965 33322110 


Q ss_pred             EEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecc-hhccccc
Q psy14542        145 VLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTEN-KRLLSAA  223 (371)
Q Consensus       145 ~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~-~~~~~p~  223 (371)
                      ...     ....|         ++.  ..+.|.|.++..+| .|.|+|.+.|. .+....     .+.|... ....+|.
T Consensus       165 ~~~-----~~~~g---------~~~--~~~~L~I~~~~~~D-~G~Y~C~a~n~-~~~~~~-----~~~v~~~~~~~~~P~  221 (323)
T 2wqr_A          165 KEE-----KQRNG---------TLT--VTSTLPVGTRDWIE-GETYQCRVTHP-HLPRAL-----MRSTTKTSGPRAAPE  221 (323)
T ss_dssp             EEE-----ECTTS---------CEE--EEEEEECCHHHHHT-TCCEEEEEECT-TSSSCE-----EEEECCCCSCCBCCE
T ss_pred             CCc-----cCCCC---------CEE--EEEEEEECHHHccC-CCCEEEEEECC-CCCCCe-----eeEEEccCCCCCCCE
Confidence            000     01111         222  23679999999999 99999999987 322111     2222210 0114555


Q ss_pred             eeeeeeeeeeeecCCeEEEEEEeec-CCCC-ceEEEeCCcccccCCce-----------EEecceEEEeccCCCCCeEEE
Q psy14542        224 KMFEKHRILNVKKDESVILPCSAQG-NPLP-TIKWYKQDSPVEESDRI-----------QRIGSSLSISHVEESDSGVWN  290 (371)
Q Consensus       224 ~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~-----------~~~~~~l~i~~~~~~d~G~Y~  290 (371)
                      +...+.... ...|+.++|.|.+.| .|.+ .+.|+++|..+......           ....+.|.|..+..+|+|.|+
T Consensus       222 v~~~~~~~~-~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~  300 (323)
T 2wqr_A          222 VYAFATPEW-PGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFI  300 (323)
T ss_dssp             EEEEECCCC-TTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEE
T ss_pred             EEEeCCChH-HhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEE
Confidence            554433322 234999999999988 4443 79999999987653211           112246999999999999999


Q ss_pred             EEEEcCCCC
Q psy14542        291 CVANNSEGQ  299 (371)
Q Consensus       291 C~a~n~~g~  299 (371)
                      |.|.|..+.
T Consensus       301 C~a~n~~~~  309 (323)
T 2wqr_A          301 CRAVHEAAS  309 (323)
T ss_dssp             EEEECTTST
T ss_pred             EEEEeCCCC
Confidence            999998876

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.96  E-value=3.7e-26  Score=200.21  Aligned_cols=256  Identities=17%  Similarity=0.256  Sum_probs=182.1

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--CEEEeeC--------------CeeEEEEccCCcCCCeEE
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--GLVLRRN--------------SDEVLVLDRVQREDAGMY   74 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~~~~~~~--------------~~~~l~i~~~~~~d~G~Y   74 (371)
                      |.|.. +.. ..+.+|+.++|.|.+ .+.|.+.+.|+|+  |..+...              ....|.|.+++.+|+|.|
T Consensus         2 P~i~~-~~~-~~~~~G~~v~l~C~~-~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   78 (389)
T 2jll_A            2 PHIIQ-LKN-ETTYENGQVTLVCDA-EGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRY   78 (389)
T ss_dssp             CEEEE-CCC-EEEETTSEEEEEEEE-ECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEE
T ss_pred             CeEEe-cCc-eEEeCCCeEEEEEEe-ecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEE
Confidence            55555 555 788899999999954 5778899999999  8777531              356899999999999999


Q ss_pred             EEEEEcCCCCeEEEEEEEEecceeeEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCc
Q psy14542         75 QCHVSADDDSAQMSAQVILGGELVEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQR  153 (371)
Q Consensus        75 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~  153 (371)
                      +|.+.|..|.....+.|.|. .+|.+...+.. .+.+|+.+.|.|.+.+.+. +.+.|++++..+.......+.+..   
T Consensus        79 ~C~a~n~~g~~~~~~~l~V~-~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~-~~i~W~~~g~~l~~~~~~~~~~~~---  153 (389)
T 2jll_A           79 DCEAASRIGGHQKSMYLDIE-YAPKFISNQTIYYSWEGNPINISCDVKSNPP-ASIHWRRDKLVLPAKNTTNLKTYS---  153 (389)
T ss_dssp             EEEEECSSCEEEEEEEEEEE-EEEEECCSCCEEEECTTCCEEEEECEEEESC-CEEEEEETTEESSCTTCTTEEEEE---
T ss_pred             EEEEEeCCCCcceEEEEEEE-eCCEEecCcceEEeccCCEEEEEEEEEecCC-CeEEEEECCccCCcccCceEEEec---
Confidence            99999999988889999998 67777666655 3488999999999998887 999999999887654311110000   


Q ss_pred             CCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeee
Q psy14542        154 EDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILN  233 (371)
Q Consensus       154 ~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~  233 (371)
                                 ++     ....|.|.++...| .|.|+|.+.|. .|......   .+.+.     ..|....... .. 
T Consensus       154 -----------~~-----~~~~L~i~~~~~~d-~G~Y~C~a~N~-~G~~~~~~---~l~v~-----~~P~~P~~~~-~~-  205 (389)
T 2jll_A          154 -----------TG-----RKMILEIAPTSDND-FGRYNCTATNH-IGTRFQEY---ILALA-----DVPSSPYGVK-II-  205 (389)
T ss_dssp             -----------CS-----SCEEEEECCCSTTS-SEEEEEEEEET-TEEEEEEE---EEEEC-----CCCCCCEEEE-EE-
T ss_pred             -----------cC-----CEEEEEECCCChhh-CEEEEEEEEcC-CCcEEEEE---EEEec-----CCCCCCcceE-Ee-
Confidence                       00     12579999999999 99999999998 77665555   56554     2222111111 11 


Q ss_pred             eecCCeEEEEEEeec----CCCC--ceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCcee
Q psy14542        234 VKKDESVILPCSAQG----NPLP--TIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKM  302 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~----~p~~--~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  302 (371)
                      ...+..+.|.|....    .|..  .+.|.+++...............+.|.++...+.+.|+|.|.|..|....
T Consensus       206 ~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~  280 (389)
T 2jll_A          206 ELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDY  280 (389)
T ss_dssp             EECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSCCEEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCC
T ss_pred             eccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCcccEEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCC
Confidence            233567888887422    2322  46788776522111000012357999999999999999999999987543

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.95  E-value=5.2e-27  Score=201.95  Aligned_cols=259  Identities=16%  Similarity=0.244  Sum_probs=162.4

Q ss_pred             CCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeC--CEEEe------------------eC----------CeeEEEEcc
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKD--GLVLR------------------RN----------SDEVLVLDR   65 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~--~~~~~------------------~~----------~~~~l~i~~   65 (371)
                      |.. +.+.+|++++|.|.+.... +.+.+.|+|+  +..+.                  ..          ...+|.|.+
T Consensus         7 p~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (344)
T 1za6_B            7 SGA-EVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSS   85 (344)
T ss_dssp             CCC-EEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             CCC-eEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECC
Confidence            444 7899999999999765432 4678999986  32110                  00          236899999


Q ss_pred             CCcCCCeEEEEEEEcCCCCeEEEEEEEEec---ceeeEec-CCceeeecCCcEEEEEEecCCCC-CceEEEeeCCEEeee
Q psy14542         66 VQREDAGMYQCHVSADDDSAQMSAQVILGG---ELVEIAS-SNQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRR  140 (371)
Q Consensus        66 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~---~~~~~~~-~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~  140 (371)
                      ++.+|+|.|+|.+.+..+.......|.|..   .+|.+.. .+...+.+|+.++|.|.+.+.++ ++.+.|++++..+..
T Consensus        86 v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~  165 (344)
T 1za6_B           86 LRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGV  165 (344)
T ss_dssp             CCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTE
T ss_pred             CCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCce
Confidence            999999999999988543333446677763   2333332 22333478999999999988633 369999999875321


Q ss_pred             CCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeec-----
Q psy14542        141 NSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTE-----  215 (371)
Q Consensus       141 ~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~-----  215 (371)
                      ...     ... ....|         ++..  .+.|.|.++.. | .|.|+|.+.|. .+......   .+.+..     
T Consensus       166 ~~~-----~~~-~~~~~---------~~~~--~s~L~i~~~~~-~-dG~Y~C~a~n~-~~~~~~~~---~~~~~v~~~~~  222 (344)
T 1za6_B          166 HTF-----PAV-LQSSG---------LYSL--SSVVTVPSSSL-G-TQTYICNVNHK-PSNTKVDK---KVEPKSCDKTH  222 (344)
T ss_dssp             EEC-----CCE-ECTTS---------CEEE--EEEEEEETTHH-H-HBCEEEEEEEG-GGTEEEEE---EECCCCC----
T ss_pred             eEC-----CCe-ECCCC---------CEEE--EEEEEEcHHHc-C-CCcEEEEEEeC-CCCccceE---eeccccccccc
Confidence            100     000 01112         2222  25788888776 4 49999999998 55332222   221100     


Q ss_pred             --------------chhccccceeeeeeeeeeeecCCeEEEEEEeecC-C-CCceEEEeCCcccccCCceE---Eec---
Q psy14542        216 --------------NKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-P-LPTIKWYKQDSPVEESDRIQ---RIG---  273 (371)
Q Consensus       216 --------------~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~~---~~~---  273 (371)
                                    .....+|.+........ ...|+.+.|.|.+.|. | .+.+.|+++|..+.......   ..+   
T Consensus       223 ~~~~~~~~~~l~~~~~~~~~P~v~~~~~~~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~  301 (344)
T 1za6_B          223 TCPPCGGGSSGGGSGGQPREPQVYTLPPSRD-ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSF  301 (344)
T ss_dssp             ----------------CCBCCEEEEECCCGG-GGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCE
T ss_pred             ccCCCCCCccccccCCCCcCCEEEEeCCChH-hccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcE
Confidence                          01114555554433222 3346679999999985 4 36899999998876432111   111   


Q ss_pred             ---ceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        274 ---SSLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       274 ---~~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                         +.|.|.....+|+|.|+|+|.|.....
T Consensus       302 ~~~s~l~i~~~~~~~~g~YtC~a~~~~l~~  331 (344)
T 1za6_B          302 FLYSKLTVDKSRWQQGNVFSCSVMHEALHN  331 (344)
T ss_dssp             EEEEEEEECHHHHHTTCEEEEEEECTTSTT
T ss_pred             EEEEEEEEChHHccCCCeEEEEEEcCCCCC
Confidence               346666666778999999999977654

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.95  E-value=2.3e-26  Score=193.32  Aligned_cols=218  Identities=18%  Similarity=0.325  Sum_probs=155.1

Q ss_pred             eeeEecCCce-eeecCCcEEEEEEecCCCCCceEEEee-CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccc
Q psy14542         97 LVEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG  174 (371)
Q Consensus        97 ~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~  174 (371)
                      +|.+...+.. .+.+|+.++|.|.+.+.+.  .+.|++ ++..+.......+..                ++     ...
T Consensus         4 ~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~--~v~W~~~~g~~~~~~~~~~~~~----------------~~-----~~~   60 (291)
T 2wim_A            4 LLQVTISLSKVELSVGESKFFTCTAIGEPE--SIDWYNPQGEKIISTQRVVVQK----------------EG-----VRS   60 (291)
T ss_dssp             CCEEEESCSEEEEETTCCEEEEEEEESCCS--EEECBCTTCCBCCCBTTEEEEE----------------ET-----TEE
T ss_pred             CceEEEeccceEecCCCcEEEEEEEeCCCC--ceEEECCCCcCccCCCcEEEec----------------CC-----CEE
Confidence            3444444444 4589999999999998764  899999 565554332211110                00     114


Q ss_pred             eEEEEEeecCCccceeEEEeecccccee-eeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCc
Q psy14542        175 ELIIHQVDESDRYRSYQCRGVNKLTGAS-LLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT  253 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~  253 (371)
                      .|.|.++..+| .|.|+|.+.+. .+.. ....   .+.|.     .+|.+...+.... +..|+.+.|.|.+.+.|.+.
T Consensus        61 ~L~i~~~~~~D-~G~Y~C~~~n~-~g~~~~~~~---~l~v~-----~~~~~~~~~~~~~-v~~G~~v~l~C~~~~~p~~~  129 (291)
T 2wim_A           61 RLTIYNANIED-AGIYRCQATDA-KGQTQEATV---VLEIY-----QKLTFREVVSPQE-FKQGEDAEVVCRVSSSPAPA  129 (291)
T ss_dssp             EEEECSCCGGG-CEEEEEEEECS-SSCEEEEEE---EEEEE-----CCCBCCSCCCSEE-EETTSCEEECCCCBCSSCCE
T ss_pred             EEEEccCCccc-CEEEEEEEecc-cCceEEEEE---EEEec-----CCcceEeCCCChh-hcCCCCEEEEEEEccCCCCE
Confidence            79999999999 99999999988 5543 3333   56666     5555555555555 89999999999999999999


Q ss_pred             eEEEeCCccccc--CCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCc--eeEEEEEEecCcccccccceEEEEeeee
Q psy14542        254 IKWYKQDSPVEE--SDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQYAHGKYHMLSSGELIIHQVDE  328 (371)
Q Consensus       254 v~W~~~~~~~~~--~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~~  328 (371)
                      +.|++++..+..  ..++. ..++.|.|.++..+|+|.|+|.+.|..+..  ...+.+.|..+|.         +.  ..
T Consensus       130 v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~---------~~--~~  198 (291)
T 2wim_A          130 VSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPA---------IS--MP  198 (291)
T ss_dssp             EEEECC----CBCCCSSEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCC---------CB--CS
T ss_pred             EEEEECCccccccCCceEEEccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCc---------cc--cC
Confidence            999999987764  33333 345689999999999999999999988653  4556777777777         33  11


Q ss_pred             ccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        329 KNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                      +..            ....+.+|+.+.|.|.+.|+|+|.++|+
T Consensus       199 ~~~------------~~~~~~~g~~~~l~C~~~g~p~p~v~W~  229 (291)
T 2wim_A          199 QKS------------FNATAERGEEMTFSCRASGSPEPAISWF  229 (291)
T ss_dssp             CSE------------EECCSSSCCEEEEECBCCCBSCCEEEEE
T ss_pred             ccc------------ccceecCCCeEEEEEEeecCCCCeEEEE
Confidence            111            1125678999999999999999999996

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.94  E-value=8.6e-27  Score=207.77  Aligned_cols=265  Identities=11%  Similarity=0.125  Sum_probs=169.4

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCC-eeEEEeCCEEEe--------e-C---CeeEEEEccCCcCCCeEEEE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSS-AKAWLKDGLVLR--------R-N---SDEVLVLDRVQREDAGMYQC   76 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~-~~~W~~~~~~~~--------~-~---~~~~l~i~~~~~~d~G~Y~C   76 (371)
                      +|.+...+.. ..+.+|+.++|.|.+....|.+ .+.|++++..+.        . .   ....|.|.+++.+| |.|+|
T Consensus       123 ~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C  200 (444)
T 1igt_B          123 APSVYPLAPV-CGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITC  200 (444)
T ss_dssp             CCEEEEECCC-SSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEE
T ss_pred             CCceeEeccc-ccCCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEE
Confidence            4555544433 2357999999999766555665 899999876421        0 0   23568999999999 99999


Q ss_pred             EEEcCCCCeEEEEEEEEe-----------------cceeeE-ecCCcee--eecCCcEEEEEEecCCC---CCceEEEee
Q psy14542         77 HVSADDDSAQMSAQVILG-----------------GELVEI-ASSNQVV--VDVGHRIELHCRVSPKR---LSSAKAWLK  133 (371)
Q Consensus        77 ~~~~~~~~~~~~~~l~v~-----------------~~~~~~-~~~~~~~--~~~g~~v~l~C~~~~~~---~~~~v~W~~  133 (371)
                      .+.|..+.......+.+.                 ..+|.+ ...+...  +.+|+.++|.|.+.+.+   +.+.++|++
T Consensus       201 ~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k  280 (444)
T 1igt_B          201 NVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFV  280 (444)
T ss_dssp             EEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEE
T ss_pred             EEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEE
Confidence            999988876544444321                 013333 3333333  37899999999998874   336999999


Q ss_pred             CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeee
Q psy14542        134 DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSL  213 (371)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v  213 (371)
                      ++..+.........              ...++.+.  ..+.|.|.++..+| .|.|+|.|.|. .+......   .+.+
T Consensus       281 ~~~~~~~~~~~~~~--------------~~~~~~~~--~~~~L~I~~v~~~d-~G~Y~C~a~n~-~~~~~~~~---~v~~  339 (444)
T 1igt_B          281 NNVEVHTAQTQTHR--------------EDYNSTLR--VVSALPIQHQDWMS-GKEFKCKVNNK-DLPAPIER---TISK  339 (444)
T ss_dssp             TTEECSSTTCBCCE--------------EECSSSEE--EEEEEECCHHHHHT-TCEEEEEEECT-TCSSCEEE---EEEC
T ss_pred             CCccccCcccccce--------------eCCCCcEE--EEEEEEEcHHHhcc-CCcEEEEEEcC-CCCCceEE---EEec
Confidence            99876543211000              00011211  23679999999999 99999999998 55432222   2221


Q ss_pred             ecchhccccceeeeeeeeeeeecCCeEEEEEEeec-CCCC-ceEEEeCCcccccCCceE---Eec------ceEEEeccC
Q psy14542        214 TENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLP-TIKWYKQDSPVEESDRIQ---RIG------SSLSISHVE  282 (371)
Q Consensus       214 ~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~~---~~~------~~l~i~~~~  282 (371)
                      . .....+|.+...+.... ...++.++|.|.+.| .|.+ .+.|+++|..+.......   ..+      +.|.|....
T Consensus       340 ~-~~~~~~P~v~~~~~~~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~  417 (444)
T 1igt_B          340 P-KGSVRAPQVYVLPPPEE-EMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKN  417 (444)
T ss_dssp             C-CCCCBCCEEEEECCCGG-GTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHH
T ss_pred             c-CCCCCCCEEEEeCCChH-HccCCeEEEEEEEEeeeCCCCEEEEEECCEEccccccccceeCCCCCEEEEEEEEEChHH
Confidence            0 00115666655443322 223445999999998 5655 899999998774321111   112      346677777


Q ss_pred             CCCCeEEEEEEEcCCCC
Q psy14542        283 ESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       283 ~~d~G~Y~C~a~n~~g~  299 (371)
                      .+|+|.|+|+|.|....
T Consensus       418 ~~d~g~YtC~a~n~~l~  434 (444)
T 1igt_B          418 WVERNSYSCSVVHEGLH  434 (444)
T ss_dssp             HHTCCCEEEEEECTTSG
T ss_pred             hcCCCeEEEEEECCCcC
Confidence            77899999999997643

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.94  E-value=7.1e-25  Score=198.25  Aligned_cols=304  Identities=13%  Similarity=0.151  Sum_probs=180.8

Q ss_pred             CCCcEEEeccCcEEEEEEecCCCC-C--CeeEEEeC--CE---EEe--------------eC----------CeeEEEEc
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKRL-S--SAKAWLKD--GL---VLR--------------RN----------SDEVLVLD   64 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~~-~--~~~~W~~~--~~---~~~--------------~~----------~~~~l~i~   64 (371)
                      |.. +.+.+|++++|.|.+..... .  ..+.|||.  +.   .+.              ..          ...+|.|.
T Consensus         7 p~~-v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   85 (512)
T 1zvo_C            7 SGP-GLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLR   85 (512)
T ss_pred             CCC-EEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEEC
Confidence            444 88999999999997653322 2  67999984  21   110              01          24789999


Q ss_pred             cCCcCCCeEEEEEEEcCCC-----------C--eEEEEEEEEec---ceeeEec-CCcee-eecCCcEEEEEEecCC-CC
Q psy14542         65 RVQREDAGMYQCHVSADDD-----------S--AQMSAQVILGG---ELVEIAS-SNQVV-VDVGHRIELHCRVSPK-RL  125 (371)
Q Consensus        65 ~~~~~d~G~Y~C~~~~~~~-----------~--~~~~~~l~v~~---~~~~~~~-~~~~~-~~~g~~v~l~C~~~~~-~~  125 (371)
                      +++.+|+|.|.|.+.+..+           .  ......|.|..   .+|.+.. .+... ...|+.++|.|.+.+. |.
T Consensus        86 ~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P~  165 (512)
T 1zvo_C           86 SMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPT  165 (512)
T ss_pred             cCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeeecC
Confidence            9999999999999987542           1  11335666652   2333331 22111 2346899999999887 44


Q ss_pred             CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeee
Q psy14542        126 SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLS  205 (371)
Q Consensus       126 ~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~  205 (371)
                      ++.++|++++......      .........|         .+...  +.|.|..... + .|.|+|.+.|. .+.....
T Consensus       166 p~~v~W~~~~~~~~~~------~~~~~~~~~g---------~~~~~--s~L~i~~~~~-~-~g~ytC~v~n~-~~~~~~~  225 (512)
T 1zvo_C          166 SVTVTWYMGTQSQPQR------TFPEIQRRDS---------YYMTS--SQLSTPLQQW-R-QGEYKCVVQHT-ASKSKKE  225 (512)
T ss_pred             ceEEEEEcCcccCceE------ecCceecCCC---------CEEEE--EEEEEcHHHc-C-CceEEEEEEeC-CCCceEE
Confidence            3489999965421100      0000001122         22222  4677776554 4 79999999998 4433222


Q ss_pred             e--------ccceeeeecch-----------------------------------------------hccccceeeee-e
Q psy14542        206 V--------NRGRLSLTENK-----------------------------------------------RLLSAAKMFEK-H  229 (371)
Q Consensus       206 ~--------~~~~l~v~~~~-----------------------------------------------~~~~p~~~~~~-~  229 (371)
                      .        ....+.+..++                                               ...+|.+...+ .
T Consensus       226 ~~~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~  305 (512)
T 1zvo_C          226 IFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPA  305 (512)
T ss_pred             EecCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCC
Confidence            1        00122332110                                               01223333322 2


Q ss_pred             eeeeeecCCeEEEEEEeecCCC--CceEEEeCCcccccC---CceE-------EecceEEEeccCCCCCeEEEEEEEcCC
Q psy14542        230 RILNVKKDESVILPCSAQGNPL--PTIKWYKQDSPVEES---DRIQ-------RIGSSLSISHVEESDSGVWNCVANNSE  297 (371)
Q Consensus       230 ~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~~~~~~~~---~~~~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~  297 (371)
                      ... +..|+.++|.|.+.|.++  ..++|+++|..+...   ....       ...+.|.|..+..+|.|.|+|.|.|..
T Consensus       306 ~~~-~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~  384 (512)
T 1zvo_C          306 VQD-LWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPS  384 (512)
T ss_pred             hHH-hccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCC
Confidence            222 567999999999998643  389999999876521   1111       112458999999999999999999988


Q ss_pred             CCceeEEEEEE------ecCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEE-EeeeeecCCCC--cc
Q psy14542        298 GQDKMQLFIQY------AHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVI-LPCSAQGNPLP--TI  368 (371)
Q Consensus       298 g~~~~~~~l~v------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-l~C~~~g~p~p--~i  368 (371)
                      +... ...+..      ..+|.         +. +..|.                .  +|+.+. |.|.+.|++|+  .|
T Consensus       385 ~~~~-~~~~~~~~~~~~~~~p~---------v~-~~~~~----------------~--~~~~~~~L~C~~~g~~P~~i~v  435 (512)
T 1zvo_C          385 LPPQ-RLMALREPAAQAPVKLS---------LN-LLASS----------------D--PPEAASWLLCEVSGFSPPNILL  435 (512)
T ss_pred             CCCC-ceeEEeecCCCCCCCCE---------EE-EEccC----------------c--CCCCceEEEEEEeeeCCCCcEE
Confidence            7653 222222      12333         22 11110                1  689999 99999997665  57


Q ss_pred             ccC
Q psy14542        369 KYR  371 (371)
Q Consensus       369 ~W~  371 (371)
                      +|+
T Consensus       436 ~W~  438 (512)
T 1zvo_C          436 MWL  438 (512)
T ss_pred             EEE
Confidence            895

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.94  E-value=5.5e-27  Score=199.65  Aligned_cols=236  Identities=14%  Similarity=0.175  Sum_probs=158.4

Q ss_pred             eeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceE
Q psy14542         97 LVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGEL  176 (371)
Q Consensus        97 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l  176 (371)
                      +|.+.......+.+|+.++|.|.+.+.++.+.+.|++++..+.....+.+                       ......|
T Consensus         7 ~P~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~-----------------------~~~~~~L   63 (317)
T 2y25_A            7 GPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF-----------------------KDGICTL   63 (317)
T ss_dssp             CCEEEEEEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC----------------------------CCEEE
T ss_pred             CCcEeeeeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEE-----------------------ECCeEEE
Confidence            34454444445589999999999988743389999999988775432111                       0112589


Q ss_pred             EEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec--------
Q psy14542        177 IIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG--------  248 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~--------  248 (371)
                      .|.+++.+| +|.|+|.+.+. .+......   .+.|.     .+|.+...+.... +..|+.+.|.|.+.+        
T Consensus        64 ~i~~~~~~d-~G~Y~C~~~n~-~g~~~~~~---~l~v~-----~~~~~~~~~~~~~-~~~g~~~~l~c~~~~~~l~c~~~  132 (317)
T 2y25_A           64 LITEFSKKD-AGIYEVILKDD-RGKDKSRL---KLVDE-----AFKELMMEVCKKI-ALSATDLKIQSTAEGIQLYSFVT  132 (317)
T ss_dssp             EETTCCSTT-CSCEEEEEESS-SCEEEEEE---CCSTH-----HHHHHHHHHHHHH-HTCBCCCEEEECSSEEEEEEEBS
T ss_pred             EEccCCccc-CeEEEEEEECC-CCcEEEEE---EEEEe-----cCccccccCCcee-cccCCCeEEEeeccccEEEEEec
Confidence            999999999 99999999988 66655544   55555     3333322222233 566777777777665        


Q ss_pred             --CCCCceEEEeCCcccccCCceEEec----ceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcccccccceEE
Q psy14542        249 --NPLPTIKWYKQDSPVEESDRIQRIG----SSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELI  322 (371)
Q Consensus       249 --~p~~~v~W~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~  322 (371)
                        .|.+.+.|++++..+..+.++....    ..|.|.++..+|+|.|+|.|.|..|....++.|.|.........     
T Consensus       133 ~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~-----  207 (317)
T 2y25_A          133 YYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAE-----  207 (317)
T ss_dssp             SCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHH-----
T ss_pred             cCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchh-----
Confidence              6889999999999988777665322    34999999999999999999999998888888776531110000     


Q ss_pred             EEeeeeccccccccccc-cccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        323 IHQVDEKNKRLLSAAKM-FEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       323 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                      +..+..+.......|.+ ...|....+.+|+.+.|.|.+.|+|+|.++|+
T Consensus       208 ~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~  257 (317)
T 2y25_A          208 FQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWL  257 (317)
T ss_dssp             HHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEE
T ss_pred             hcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEE
Confidence            00000000000001111 12234458899999999999999999999995

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.94  E-value=4.3e-26  Score=203.94  Aligned_cols=266  Identities=14%  Similarity=0.188  Sum_probs=163.7

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCC-CeeEEEeCCEEEe--------eC-----CeeEEEEccCCcCCCeEEE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLR--------RN-----SDEVLVLDRVQREDAGMYQ   75 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~--------~~-----~~~~l~i~~~~~~d~G~Y~   75 (371)
                      +|.+...+.. ..+.+|+.++|.|.+....|. +.+.|++++..+.        ..     ....|.|.+++.+| |.|+
T Consensus       132 ~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~  209 (457)
T 1hzh_H          132 GPSVFPLAPS-SKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYI  209 (457)
T ss_dssp             CCEEEEECCC-SCCCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCE
T ss_pred             CCeEEecCcc-ccccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEE
Confidence            4566655544 347899999999977655564 7899999884211        11     12379999999999 9999


Q ss_pred             EEEEcCCCCeEEEEEEEEec----------------ceeeE-ecCCcee--eecCCcEEEEEEecCCCCC---ceEEEee
Q psy14542         76 CHVSADDDSAQMSAQVILGG----------------ELVEI-ASSNQVV--VDVGHRIELHCRVSPKRLS---SAKAWLK  133 (371)
Q Consensus        76 C~~~~~~~~~~~~~~l~v~~----------------~~~~~-~~~~~~~--~~~g~~v~l~C~~~~~~~~---~~v~W~~  133 (371)
                      |.+.+..+.......+.+..                .+|.+ ...+...  +.+|+.++|.|.+.+.++.   ..++|++
T Consensus       210 C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k  289 (457)
T 1hzh_H          210 CNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYV  289 (457)
T ss_dssp             EEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEE
T ss_pred             EEEEeCCCCcceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEe
Confidence            99999777655444444321                12333 2222222  3579999999999987652   3999999


Q ss_pred             CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeee
Q psy14542        134 DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSL  213 (371)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v  213 (371)
                      ++..+..........     ...|         .+.+.  +.|.|.....+| .|.|+|.|.|. .+......   .+.+
T Consensus       290 ~~~~~~~~~~~~~~~-----~~~g---------~~~~~--~~l~i~~~d~~d-~G~Y~C~a~n~-~~~~~~~~---~v~~  348 (457)
T 1hzh_H          290 DGVEVHNAKTKPREE-----QYNS---------TYRVV--SVLTVLHQDWLN-GKEYKCKVSNK-ALPAPIEK---TISK  348 (457)
T ss_dssp             TTEEECCCEEEEEEE-----CTTS---------CEEEE--EEECCCHHHHHH-TCCEEEEEECT-TSSSCEEE---EECC
T ss_pred             CCcccccccccccee-----cCCC---------cEEEE--EEEEECHHHccC-CCcEEEEEeCC-CCCCcceE---EEEc
Confidence            998775432111000     0111         11111  233344445566 89999999976 33322222   2322


Q ss_pred             ecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCC--ceEEEeCCcccccCCceE---Eec------ceEEEeccC
Q psy14542        214 TENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP--TIKWYKQDSPVEESDRIQ---RIG------SSLSISHVE  282 (371)
Q Consensus       214 ~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~---~~~------~~l~i~~~~  282 (371)
                      .. ....+|.+...+.....+..|+ +.|.|.+.|.+++  .+.|+++|..+.......   ..+      +.|.|....
T Consensus       349 ~~-~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~  426 (457)
T 1hzh_H          349 AK-GQPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSR  426 (457)
T ss_dssp             CC-CCCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEEEHHH
T ss_pred             cc-CCCCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEEChHH
Confidence            00 0115566655443322144455 9999999986443  899999998875432111   112      246666666


Q ss_pred             CCCCeEEEEEEEcCCCCc
Q psy14542        283 ESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       283 ~~d~G~Y~C~a~n~~g~~  300 (371)
                      .+|+|.|+|.|.|.....
T Consensus       427 ~~~~g~YtC~a~n~~l~~  444 (457)
T 1hzh_H          427 WQQGNVFSCSVMHEALHN  444 (457)
T ss_dssp             HHTTCCEEEEEECTTSGG
T ss_pred             ccCCCeEEEEEEECCCCC
Confidence            688999999999987553

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.94  E-value=4.1e-27  Score=201.99  Aligned_cols=220  Identities=21%  Similarity=0.303  Sum_probs=97.4

Q ss_pred             EecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEE
Q psy14542        100 IASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIH  179 (371)
Q Consensus       100 ~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~  179 (371)
                      +.......+.+|+.++|.|.+.+.++.+.+.|++++..+.....                        +.+ .+..|.|.
T Consensus        12 ~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~------------------------~~~-~~~~L~i~   66 (334)
T 1ry7_B           12 PGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSER------------------------VLV-GPQRLQVL   66 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCccc------------------------EEe-ccceEEEe
Confidence            33344445589999999999988743379999999887654321                        111 23689999


Q ss_pred             EeecCCccceeEEEeeccccceeeeeeccceeeeecchhc-----------------cccceeee----eeeeeeeecCC
Q psy14542        180 QVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRL-----------------LSAAKMFE----KHRILNVKKDE  238 (371)
Q Consensus       180 ~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~-----------------~~p~~~~~----~~~~~~~~~g~  238 (371)
                      +++.+| +|.|+|.+.+.  +......   .|.|......                 .+|.+...    ..... +..|+
T Consensus        67 ~v~~~D-~G~Y~C~a~n~--~~~~~~~---~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~-v~~g~  139 (334)
T 1ry7_B           67 NASHED-SGAYSCRQRLT--QRVLCHF---SVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLA-VPAAN  139 (334)
T ss_dssp             ----------------------------------------------------------CCCCSCCTTCCCCEEE-EETTC
T ss_pred             eccccc-CEEEEEEEEeC--CeEEEEE---EEEEeccCccccccccccccccccccCCCCEEeccccccceeEE-ecCCC
Confidence            999999 99999999987  4443344   5555532110                 12333211    11233 88999


Q ss_pred             eEEEEEEeecCCCCceEEEeCCcccccCCceE-----EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542        239 SVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ-----RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       239 ~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      .+.|.|.+.|.|.+.+.|++++..+....++.     .....|.|.++..+|+|.|+|.|.|..|.....+.|.|...+.
T Consensus       140 ~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~  219 (334)
T 1ry7_B          140 TVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP  219 (334)
T ss_dssp             CEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCC
T ss_pred             cEEEEEEccCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCC
Confidence            99999999999999999999998877654321     2345899999999999999999999999988888998886543


Q ss_pred             cccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        314 HMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                      .             .|..       ....|....+.+|+.+.|.|.+.|.|+|.++|+
T Consensus       220 ~-------------~p~~-------~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~  257 (334)
T 1ry7_B          220 H-------------RPIL-------QAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL  257 (334)
T ss_dssp             S-------------SCBC-------CTTCSCCEEEESSCCEEECCCCBCSSCEEEEEE
T ss_pred             C-------------CCce-------EecCCCceEEeCCCCEEEEEEEecCCCCeEEEE
Confidence            0             0000       011223347889999999999999999999995

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.94  E-value=1.9e-25  Score=191.07  Aligned_cols=206  Identities=18%  Similarity=0.294  Sum_probs=151.2

Q ss_pred             eecCCcEEEEEEecCCC--------CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEE
Q psy14542        108 VDVGHRIELHCRVSPKR--------LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIH  179 (371)
Q Consensus       108 ~~~g~~v~l~C~~~~~~--------~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~  179 (371)
                      +.+|+.+.|.|.+.+.+        +.+.+.|++++..+....                        +.  ..+..|.|.
T Consensus        41 v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~------------------------~~--~~~~~L~i~   94 (329)
T 3oq3_B           41 AALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLN------------------------RR--VKNGDLWIA   94 (329)
T ss_dssp             ECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECS------------------------TT--EETTEEEES
T ss_pred             EECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccC------------------------ce--eecceEEEc
Confidence            47999999999997742        237999999987655421                        11  224789999


Q ss_pred             EeecCCccc-eeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCC-CCceEEE
Q psy14542        180 QVDESDRYR-SYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNP-LPTIKWY  257 (371)
Q Consensus       180 ~~~~~d~~g-~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~  257 (371)
                      +++.+| +| .|+|.+.+. .|......   ...+..    .+|.+........ +..|+.+.|.|.+.|.| .+.+.|+
T Consensus        95 ~v~~~D-~Gs~Y~C~a~n~-~g~~~~~~---~~~v~~----~~p~~~~~~~~~~-~~~G~~v~L~C~~~g~p~~~~i~W~  164 (329)
T 3oq3_B           95 NYTSND-SHRRYLCTVTTK-NGDCVQGI---VRSHIR----KPPSCIPETYELG-THDKYGIDLYCGILYAKHYNNITWY  164 (329)
T ss_dssp             SCCGGG-GGCCEEEEEECT-TSCEEEEE---EEEEEC----CCCSCEEEEEETT-SSTTTCEEEECCCCSCCCCCEEEEE
T ss_pred             CCChHh-CCCcEEEEEEeC-CCceeeEE---EEEEEc----CCCcEeccccceE-EeCCCcEEEEeccCCCCCCceEEEE
Confidence            999999 99 999999998 55433332   222321    3444444444344 77899999999999999 8999999


Q ss_pred             eCCcccc-cCCceEEecceEEEeccCCCCCeEEEEEEEcC--CCCceeE----EEEEEecCcccccccceEEEEeeeecc
Q psy14542        258 KQDSPVE-ESDRIQRIGSSLSISHVEESDSGVWNCVANNS--EGQDKMQ----LFIQYAHGKYHMLSSGELIIHQVDEKN  330 (371)
Q Consensus       258 ~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~--~g~~~~~----~~l~v~~~p~~~~~~~~~~~~~~~~~~  330 (371)
                      +++..+. ...++...++.|.|.++..+|+|.|+|.|.|.  .|.....    +.|.|..+|...       .. +.   
T Consensus       165 k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~-------~~-~~---  233 (329)
T 3oq3_B          165 KNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHR-------FK-LI---  233 (329)
T ss_dssp             ETTEECCCSSSSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCC-------EE-EE---
T ss_pred             ECCccCCCCCceEecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCC-------Cc-ee---
Confidence            9999885 34556566789999999999999999999997  6654433    778887776410       00 01   


Q ss_pred             ccccccccccccceeeeeecCCeEEEeeeeecCC---CC-ccccC
Q psy14542        331 KRLLSAAKMFEKHRILNVKKDESVILPCSAQGNP---LP-TIKYR  371 (371)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p---~p-~i~W~  371 (371)
                                 .|....+.+|+.+.|.|.+.|.|   +| .+.|+
T Consensus       234 -----------~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~  267 (329)
T 3oq3_B          234 -----------LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWE  267 (329)
T ss_dssp             -----------CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEE
T ss_pred             -----------cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEE
Confidence                       12224788999999999999998   67 78995

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.93  E-value=6.6e-27  Score=207.85  Aligned_cols=265  Identities=13%  Similarity=0.170  Sum_probs=170.5

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCC-eeEEEeCCEEEe--------e-C---CeeEEEEccCCcCCCeEEEE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSS-AKAWLKDGLVLR--------R-N---SDEVLVLDRVQREDAGMYQC   76 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~-~~~W~~~~~~~~--------~-~---~~~~l~i~~~~~~d~G~Y~C   76 (371)
                      +|.+...+.. ..+.+|+.++|.|.+....|.+ .+.|++++..+.        . .   ....|.|.+++.+| |.|+|
T Consensus       119 ~P~i~~~~~~-~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C  196 (434)
T 1igy_B          119 PPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTC  196 (434)
T ss_dssp             CCCEEEECCC-CCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEE
T ss_pred             CCeEEEcCCc-cccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEE
Confidence            4555554443 3468999999999766555665 899999886421        0 0   23468999999989 99999


Q ss_pred             EEEcCCCCeEEEEEEEEec-----------c-eeeEecCCcee--eecCCcEEEEEEecCCCC---CceEEEeeCCEEee
Q psy14542         77 HVSADDDSAQMSAQVILGG-----------E-LVEIASSNQVV--VDVGHRIELHCRVSPKRL---SSAKAWLKDGLVLR  139 (371)
Q Consensus        77 ~~~~~~~~~~~~~~l~v~~-----------~-~~~~~~~~~~~--~~~g~~v~l~C~~~~~~~---~~~v~W~~~~~~~~  139 (371)
                      .+.+..+.......+.+..           . +..+...+...  +.+|+.++|.|.+.+.++   .+.++|++++..+.
T Consensus       197 ~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~  276 (434)
T 1igy_B          197 NVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVH  276 (434)
T ss_dssp             EEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBC
T ss_pred             EEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccC
Confidence            9999888754444443220           0 12222233222  578999999999998742   36899999987664


Q ss_pred             eCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhc
Q psy14542        140 RNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRL  219 (371)
Q Consensus       140 ~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~  219 (371)
                      ......     .....         ++.+.  ..+.|.|.++..+| .|.|+|.+.|. .+......   .+.+.. ...
T Consensus       277 ~~~~~~-----~~~~~---------~~~~~--~~~~L~i~~~~~~d-~G~Y~C~a~n~-~~~~~~~~---~v~~~~-~~~  334 (434)
T 1igy_B          277 TAQTQP-----REEQF---------NSTFR--VVSALPIMHQDWLN-GKEFKCRVNSA-AFPAPIEK---TISKTK-GKP  334 (434)
T ss_dssp             CCSCCC-----CCCCC---------SSSCC--CCCCEECCHHHHHH-TCCCBCCBCCS-SCSSCCCC---CCCCCC-SCC
T ss_pred             CcccCc-----ceeCC---------CCcEE--EEEEEEECHHHccC-CCcEEEEEECC-CCCCceeE---EEeccC-CCC
Confidence            321100     00001         11221  12579999999999 99999999988 55432222   222200 011


Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecC-CC-CceEEEeCCcccccCCceE---------EecceEEEeccCCCCCeE
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGN-PL-PTIKWYKQDSPVEESDRIQ---------RIGSSLSISHVEESDSGV  288 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~G~  288 (371)
                      .+|.+...+.... ...|+.+.|.|.+.|. |+ +.++|+++|..+.......         ...+.|.|.....+|+|.
T Consensus       335 ~~P~v~~~~~~~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~  413 (434)
T 1igy_B          335 RAPQVYTIPPPKE-QMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNT  413 (434)
T ss_dssp             BCCCCEEECCCSS-SSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTCC
T ss_pred             cCCEEEEECCCHH-HhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEEEEEECchhccCCCE
Confidence            5666665554433 4457789999999985 43 3899999999875332111         112357777777788999


Q ss_pred             EEEEEEcCCCC
Q psy14542        289 WNCVANNSEGQ  299 (371)
Q Consensus       289 Y~C~a~n~~g~  299 (371)
                      |+|.|.|....
T Consensus       414 YtC~a~n~~l~  424 (434)
T 1igy_B          414 FTCSVLHEGLH  424 (434)
T ss_dssp             EEEEEEETTSG
T ss_pred             EEEEEEcCCCC
Confidence            99999998754

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.93  E-value=9.2e-25  Score=174.67  Aligned_cols=191  Identities=23%  Similarity=0.344  Sum_probs=142.3

Q ss_pred             ceeeEecCCcee-eecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCC-eeEEEEcccCcCCCeeEEEEEeCCceeEecc
Q psy14542         96 ELVEIASSNQVV-VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS-DEVLVLDRVQREDAGMYQCHIEDGKYHMLSS  173 (371)
Q Consensus        96 ~~~~~~~~~~~~-~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~  173 (371)
                      .+|.+...+... +.+|+.++|.|.+.+.+. +.+.|++++..+.... .+.+..               ..+     ..
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~-~~v~W~~~~~~~~~~~~~~~~~~---------------~~~-----~~   63 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPP-PSIVWRKNGKKVSGTQSRYTVLE---------------QPG-----GI   63 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSC-CEEEEEETTEECCTTSTTEEEEE---------------ETT-----TE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEccCCC-CeEEEEECCEECCCCcceeEEEE---------------cCC-----Ce
Confidence            355555555443 489999999999998877 7999999998876321 111100               000     01


Q ss_pred             ceEEEEEeec-CCccceeEEEeeccccce-eeeeeccceeeeecchh--ccccceeeeeeeeeeeecCCeEEEEEEeecC
Q psy14542        174 GELIIHQVDE-SDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKR--LLSAAKMFEKHRILNVKKDESVILPCSAQGN  249 (371)
Q Consensus       174 ~~l~i~~~~~-~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~--~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~  249 (371)
                      ..|.|.++.. .| +|.|+|.+.+. .+. .....   .|.|.....  ...|.+...+.... +..|+.+.|.|.+.+.
T Consensus        64 ~~L~i~~v~~~~d-~G~Y~C~~~n~-~g~~~~~~~---~l~V~~~~~~~~~~p~~~~~~~~~~-~~~g~~v~l~C~~~g~  137 (212)
T 2yd1_A           64 SILRIEPVRAGRD-DAPYECVAENG-VGDAVSADA---TLTIYEGDKTPAGFPVITQGPGTRV-IEVGHTVLMTCKAIGN  137 (212)
T ss_dssp             EEEEESSCCTTTT-CSEEEEEEECS-SSCEEEEEE---EEEEECTTCSCTTCCEEEECCCCEE-EETTCCEEECCEEECS
T ss_pred             EEEEEEecCCCCc-CceEEEEEEeC-CCCeEEeeE---EEEEecccCCCCCCCeeEeCCCceE-eecCCeEEEEEEeccC
Confidence            5799999999 99 99999999998 555 55555   677763321  11256666555555 8899999999999999


Q ss_pred             CCCceEEEeCCccccc-CCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeE-EEEEEecCcc
Q psy14542        250 PLPTIKWYKQDSPVEE-SDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ-LFIQYAHGKY  313 (371)
Q Consensus       250 p~~~v~W~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~p~  313 (371)
                      |.+.+.|++++..+.. ..++...++.|.|.++..+|+|.|+|.|.|..|..... +.|.|.....
T Consensus       138 p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~~  203 (212)
T 2yd1_A          138 PTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRV  203 (212)
T ss_dssp             SCCEEEEEETTEECCTTSTTEEEETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred             CCCeEEEEECCeEcccCCCeEEccCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEeccc
Confidence            9999999999998875 35566677899999999999999999999999998654 8888887655

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.93  E-value=8.1e-25  Score=172.92  Aligned_cols=188  Identities=20%  Similarity=0.287  Sum_probs=140.3

Q ss_pred             eeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccce
Q psy14542         97 LVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE  175 (371)
Q Consensus        97 ~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~  175 (371)
                      +|.+...+. ..+.+|+.+.|.|.+.+.+. +.+.|++++..+.......              ......+     ....
T Consensus         4 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~--------------~~~~~~~-----~~~~   63 (197)
T 2j8h_A            4 APHFKEELRNLNVRYQSNATLVCKVTGHPK-PIVKWYRQGKEIIADGLKY--------------RIQEFKG-----GYHQ   63 (197)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSSC-CEEEEEETTEECCCCSSSE--------------EEEEETT-----TEEE
T ss_pred             CCEEEEcCCccEEcCCCEEEEEEEEeecCC-CEEEEEECCEECccCCCcE--------------EEEEcCC-----CEEE
Confidence            455554444 34489999999999998777 8999999998876532110              0000000     0137


Q ss_pred             EEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceE
Q psy14542        176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK  255 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~  255 (371)
                      |.|.+++.+| .|.|+|.+.+. .+......   .|.|...+....|.....+.... +..|+.+.|.|.+.+.|.+.+.
T Consensus        64 L~i~~~~~~d-~G~Y~C~~~n~-~g~~~~~~---~l~V~~~p~~~~~~~~~~~~~~~-~~~g~~~~l~C~~~g~p~p~i~  137 (197)
T 2j8h_A           64 LIIASVTDDD-ATVYQVRATNQ-GGSVSGTA---SLEVEVPAKIHLPKTLEGMGAVH-ALRGEVVSIKIPFSGKPDPVIT  137 (197)
T ss_dssp             EEECSCCGGG-CSEEEEEEEET-TEEEEEEE---EEEEEEEEEECCSSCBTTBEEEE-EETTCCCEEEEEEEEESCCEEE
T ss_pred             EEECcCCHHh-CEEEEEEEEEC-CCceeEEE---EEEEcCCCcCCCCccccccCeEE-EeCCCEEEEEEEEEecCCCcEE
Confidence            9999999999 99999999988 66666666   77777433222232222233444 8899999999999999999999


Q ss_pred             EEeCCcccccCCceEE----ecceEEEec-cCCCCCeEEEEEEEcCCCCceeEEEEEEec
Q psy14542        256 WYKQDSPVEESDRIQR----IGSSLSISH-VEESDSGVWNCVANNSEGQDKMQLFIQYAH  310 (371)
Q Consensus       256 W~~~~~~~~~~~~~~~----~~~~l~i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  310 (371)
                      |++++..+....++..    ..+.|.|.+ +..+|+|.|+|.|.|..|....++.|.|.+
T Consensus       138 W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~d  197 (197)
T 2j8h_A          138 WQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD  197 (197)
T ss_dssp             EEESSCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEECCEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEeC
Confidence            9999998887766653    235799999 999999999999999999999999888863

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.93  E-value=3.8e-25  Score=190.85  Aligned_cols=225  Identities=15%  Similarity=0.177  Sum_probs=146.8

Q ss_pred             ceeeecCCcEEEEEEecCCCC----------CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccc
Q psy14542        105 QVVVDVGHRIELHCRVSPKRL----------SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG  174 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~----------~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~  174 (371)
                      ...+.+|+.+.|.|.+.+.+.          .+.+.|++++......    ..+...   .         .+......+.
T Consensus        16 ~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~----~~~~~~---~---------~~~~~~~~~~   79 (349)
T 4dep_C           16 QIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLE----EPINFR---L---------PENRISKEKD   79 (349)
T ss_dssp             CCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCE----EECCCC---C---------GGGCEEEETT
T ss_pred             eEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCccc----cccccc---c---------cCceEeecCC
Confidence            444589999999999987542          3799999987311100    000000   0         0011112346


Q ss_pred             eEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEe-----ecC
Q psy14542        175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSA-----QGN  249 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-----~~~  249 (371)
                      .|.|.+++.+| +|.|+|.+.+. .+....+.   .|.|........+.+ ..+.... +..|+.+.|.|.+     .+.
T Consensus        80 ~L~i~~~~~~D-~G~Y~C~a~n~-~~~~~~~~---~l~V~~~~~~~~~~~-~~~~~~~-~~~g~~~~l~C~~~~~~~~g~  152 (349)
T 4dep_C           80 VLWFRPTLLND-TGNYTCMLRNT-TYCSKVAF---PLEVVQKDSCFNSPM-KLPVHKL-YIEYGIQRITCPNVDGYFPSS  152 (349)
T ss_dssp             EEEESSCCGGG-CEEEEEEEECS-SCEEEEEE---EEEEECCCTTSCCSC-CCCEEEE-ETTCSEEEEECCSCTTSSCTT
T ss_pred             EEEEccCChhh-CEEEEEEEecC-CceEEEEE---EEEEecCCcccCccc-ccCccee-eecCccEEEEcCCCcccccCC
Confidence            89999999999 99999999998 66666666   788874322111111 1122334 8899999999985     678


Q ss_pred             CCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCC-CCc---eeEEEEEEecCcccccccceEEEEe
Q psy14542        250 PLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSE-GQD---KMQLFIQYAHGKYHMLSSGELIIHQ  325 (371)
Q Consensus       250 p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~---~~~~~l~v~~~p~~~~~~~~~~~~~  325 (371)
                      |.+.+.|++++..+....++...+..|.|.++..+|+|.|+|.|.|.. |..   +..+.|.|..++...          
T Consensus       153 p~~~v~W~k~~~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~----------  222 (349)
T 4dep_C          153 VKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNA----------  222 (349)
T ss_dssp             SCCEEEEEETTEECCSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGC----------
T ss_pred             CCceEEEeeCCEECCCccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCC----------
Confidence            999999999999887766676777889999999999999999999987 544   567777776643200          


Q ss_pred             eeecccccccccccccccee--eeeecCCeEEEeeeee----cCCCCccccC
Q psy14542        326 VDEKNKRLLSAAKMFEKHRI--LNVKKDESVILPCSAQ----GNPLPTIKYR  371 (371)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~l~C~~~----g~p~p~i~W~  371 (371)
                               .+|.+..++..  ..+.+|+.++|.|.+.    |.|.|.+.|+
T Consensus       223 ---------~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~  265 (349)
T 4dep_C          223 ---------VPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWT  265 (349)
T ss_dssp             ---------CSCEEC----------------CCCEEEEECCCTTCCCEEEEE
T ss_pred             ---------CCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEE
Confidence                     01111111111  1677999999999999    5688999995

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.93  E-value=5.4e-26  Score=195.41  Aligned_cols=225  Identities=15%  Similarity=0.269  Sum_probs=159.8

Q ss_pred             ceeeEecCCce-eeecCCcEEEEEEec-------CCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCc
Q psy14542         96 ELVEIASSNQV-VVDVGHRIELHCRVS-------PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGK  167 (371)
Q Consensus        96 ~~~~~~~~~~~-~~~~g~~v~l~C~~~-------~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~  167 (371)
                      ..|.+...+.. .+.+|+.+.|.|.+.       +.+. +.+.|++++..+......                    ..+
T Consensus        17 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~-~~v~W~k~~~~~~~~~~~--------------------~~~   75 (339)
T 3o4o_C           17 SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPR-INLTWHKNDSARTVPGEE--------------------ETR   75 (339)
T ss_dssp             -CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSC-CBCCCEESSCCSCCSCCS--------------------SSC
T ss_pred             hhHhhCcCceEEEEECCccEEEEeccccccccccCCCC-ceEEEEECCCCcccCccc--------------------ccc
Confidence            34555555544 448999999999997       6666 899999998763221100                    011


Q ss_pred             eeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEE--
Q psy14542        168 YHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCS--  245 (371)
Q Consensus       168 ~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~--  245 (371)
                      .. ..+..|.|.+++.+| .|.|+|.+.+. .+......   .|.|........+.+   ..... +..|+.+.|.|.  
T Consensus        76 ~~-~~~~~L~i~~v~~~D-~G~Y~C~~~n~-~g~~~~~~---~l~V~~~~~~~~~~~---~~~~~-~~~g~~v~l~C~~~  145 (339)
T 3o4o_C           76 MW-AQDGALWLLPALQED-SGTYVCTTRNA-SYCDKMSI---ELRVFENTDAFLPFI---SYPQI-LTLSTSGVLVCPDL  145 (339)
T ss_dssp             EE-EETTEEEESSBCTTC-CEEEECCEEET-TEEEEEEE---EEEEECSCGGGHHHH---CEEEE-EETTSCEEEECCSC
T ss_pred             EE-eeCCeEEECCCCccc-CEEEEEEEECC-cceEEEEE---EEEEEcCCCcccccc---ccceE-EECCCCEEEEecCC
Confidence            11 234689999999999 99999999988 66666666   777774322111111   11223 889999999999  


Q ss_pred             ---eecCCCCceEEEeCCcccccC-CceEEec--ceEEEeccCCCCCeEEEEEEEcCCCC----ceeEEEEEEecCcccc
Q psy14542        246 ---AQGNPLPTIKWYKQDSPVEES-DRIQRIG--SSLSISHVEESDSGVWNCVANNSEGQ----DKMQLFIQYAHGKYHM  315 (371)
Q Consensus       246 ---~~~~p~~~v~W~~~~~~~~~~-~~~~~~~--~~l~i~~~~~~d~G~Y~C~a~n~~g~----~~~~~~l~v~~~p~~~  315 (371)
                         +.+.|.+.+.|++++..+... .++....  +.|.|.++..+|+|.|+|.|.|..|.    ....+.|.|...+.. 
T Consensus       146 ~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~-  224 (339)
T 3o4o_C          146 SEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEE-  224 (339)
T ss_dssp             TTTCCSSSCCCBCCEESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCC-
T ss_pred             cccccCCCCceEEEecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCC-
Confidence               788899999999999988765 4444333  47999999999999999999998874    466777877754420 


Q ss_pred             cccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeee---ecCC-CCccccC
Q psy14542        316 LSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSA---QGNP-LPTIKYR  371 (371)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~---~g~p-~p~i~W~  371 (371)
                                         .+|.+...+....+.+|+.+.|.|.+   .|.| +|.+.|+
T Consensus       225 -------------------~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~  265 (339)
T 3o4o_C          225 -------------------TIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWT  265 (339)
T ss_dssp             -------------------CCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEE
T ss_pred             -------------------CCCEEecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEE
Confidence                               11222222333478899999999999   8999 7889985

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.93  E-value=5.1e-25  Score=173.33  Aligned_cols=182  Identities=24%  Similarity=0.392  Sum_probs=141.8

Q ss_pred             ceeeEecCCcee-eecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-c
Q psy14542         96 ELVEIASSNQVV-VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-S  173 (371)
Q Consensus        96 ~~~~~~~~~~~~-~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-~  173 (371)
                      .+|.+...+... +.+|+.+.|.|.+.+.+. +.+.|++++..+....                       .++.+.. .
T Consensus         6 ~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~-~~i~W~~~~~~~~~~~-----------------------~~~~~~~~~   61 (192)
T 2iep_A            6 KAPVITTPLETVDALVEEVATFMCAVESYPQ-PEISWTRNKILIKLFD-----------------------TRYSIRENG   61 (192)
T ss_dssp             EEEEESSCCCEEEEETTSCEEEECCEEEESC-CEEEEEETTEECCTTC-----------------------TTEEEEGGG
T ss_pred             CCceeecCccceeeeCCCcEEEEeeCCCCCC-CeEEEEECCEEccccC-----------------------ccEEEcCCc
Confidence            455666555543 489999999999988777 7999999998775432                       1222222 2


Q ss_pred             ceEEEEEeecCCccceeEEEeeccccce-eeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCC
Q psy14542        174 GELIIHQVDESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP  252 (371)
Q Consensus       174 ~~l~i~~~~~~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~  252 (371)
                      ..|.|.+++.+| .|.|+|.+.+. .+. .....   .+.|.     .+|.+...+.... +..|+.+.|.|.+.+.|.+
T Consensus        62 ~~L~i~~~~~~d-~G~Y~C~~~~~-~~~~~~~~~---~l~v~-----~~p~~~~~~~~~~-~~~g~~~~l~C~~~g~p~~  130 (192)
T 2iep_A           62 QLLTILSVEDSD-DGIYCCTANNG-VGGAVESCG---ALQVK-----MKPKITRPPINVK-IIEGLKAVLPCTTMGNPKP  130 (192)
T ss_dssp             TEEEESSCCGGG-CEEEEEEEECS-SSCCEEEEE---EEEEE-----EEEEEEECCCCEE-EETTSCEEECCEEEEESCC
T ss_pred             cEEEEcCCCccc-CeEEEEEEEcC-CCceeEeEE---EEEEE-----eCCccccCCcceE-EeCCCcEEEEEEEeccCCc
Confidence            469999999999 99999999987 444 34444   67777     5666666655555 8999999999999999999


Q ss_pred             ceEEEeCCcccccCCceEE-ecceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEEecCc
Q psy14542        253 TIKWYKQDSPVEESDRIQR-IGSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQYAHGK  312 (371)
Q Consensus       253 ~v~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~p  312 (371)
                      .+.|++++..+....++.. .++.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..+|
T Consensus       131 ~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          131 SVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             EEEEEETTEECCCCSSEEECTTSCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             eEEEEeCCEEccCCCcEEEecCCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence            9999999998887766653 45689999999999999999999999987 567888888765

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.93  E-value=1e-24  Score=171.84  Aligned_cols=184  Identities=21%  Similarity=0.331  Sum_probs=140.0

Q ss_pred             ceeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCC--eeEEEEcccCcCCCeeEEEEEeCCceeEec
Q psy14542         96 ELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS--DEVLVLDRVQREDAGMYQCHIEDGKYHMLS  172 (371)
Q Consensus        96 ~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~  172 (371)
                      .+|.+...+. ..+.+|+.++|.|.+.+.+. +.+.|++++..+....  ...+..               .+      .
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~---------------~~------~   61 (194)
T 2a38_A            4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPV-PEVSWFRDGQVISTSTLPGVQISF---------------SD------G   61 (194)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESC-CEEEEEESSSBCCTTTSTTCEEEE---------------ET------T
T ss_pred             CCCeEEccCCceEEECCCEEEEEEEEEecCC-CEEEEEECCEEcccccCCceEEEe---------------CC------C
Confidence            3455555444 34489999999999988776 7999999988765542  111100               01      1


Q ss_pred             cceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCC
Q psy14542        173 SGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP  252 (371)
Q Consensus       173 ~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~  252 (371)
                      ...|.|.+++..| .|.|+|.+.+. .+......   .+.|...  ..+|.+...+.... +..|+.+.|.|.+.+.|.+
T Consensus        62 ~~~L~i~~~~~~d-~G~Y~C~~~n~-~~~~~~~~---~l~v~~~--~~~p~~~~~~~~~~-~~~g~~~~l~C~~~g~p~~  133 (194)
T 2a38_A           62 RAKLTIPAVTKAN-SGRYSLKATNG-SGQATSTA---ELLVKAE--TAPPNFVQRLQSMT-VRQGSQVRLQVRVTGIPTP  133 (194)
T ss_dssp             EEEEEESSCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEECC--CEEEEEEECCCCEE-ECTTEEEEEEEEEEEESCC
T ss_pred             EEEEEECCCCccc-CEEEEEEEEcC-CceEeEEE---EEEEccC--CCCCEEEeCCccEE-EcCCCEEEEEEEEEEecCC
Confidence            2579999999999 99999999988 66655555   6666532  13555555555555 8999999999999999999


Q ss_pred             ceEEEeCCcccccCCceEEe--cc--eEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542        253 TIKWYKQDSPVEESDRIQRI--GS--SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA  309 (371)
Q Consensus       253 ~v~W~~~~~~~~~~~~~~~~--~~--~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  309 (371)
                      .+.|++++..+....++...  +.  +|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus       134 ~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  194 (194)
T 2a38_A          134 VVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ  194 (194)
T ss_dssp             EEEEEETTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eEEEEECCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence            99999999988877666532  22  79999999999999999999999999888888774

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.93  E-value=9.7e-26  Score=191.77  Aligned_cols=216  Identities=15%  Similarity=0.253  Sum_probs=151.7

Q ss_pred             ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542        105 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES  184 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~  184 (371)
                      ...+.+|+.+.|.|.+.+.++.+.+.|++++..+.....           .         ..++.. .+..|.|.+++.+
T Consensus        14 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~-----------~---------~~~~~~-~~~~L~i~~v~~~   72 (315)
T 1itb_B           14 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTE-----------Q---------ASRIHQ-HKEKLWFVPAKVE   72 (315)
T ss_dssp             CCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCC-----------T---------TSSSEE-CSSBEECTTCCGG
T ss_pred             EEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccc-----------c---------CCcEec-cCCeEEECCCChh
Confidence            344589999999999998874489999999864322110           0         112222 2358999999999


Q ss_pred             CccceeEEEeeccccceeeeeeccceeeeecchhccccceeeee---eeeeeeecCCeEEEEEEe------ecCCCCceE
Q psy14542        185 DRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEK---HRILNVKKDESVILPCSA------QGNPLPTIK  255 (371)
Q Consensus       185 d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~---~~~~~~~~g~~~~l~C~~------~~~p~~~v~  255 (371)
                      | +|.|+|.+.+. .+......   .+.+..    .+|.+...+   .... +..|+.+.|.|.+      .|.|.+.+.
T Consensus        73 D-~G~Y~C~a~n~-~g~~~~~~---~v~v~~----~~p~~~~~~~~~~~~~-~~~g~~v~l~C~~~~~~~~~g~p~~~i~  142 (315)
T 1itb_B           73 D-SGHYYCVVRNS-SYCLRIKI---SAKFVE----NEPNLCYNAQAIFKQK-LPVAGDGGLVCPYMEFFKNENNELPKLQ  142 (315)
T ss_dssp             G-CSCCEECCCSS-SCCCCEEC---CCEEEC----CCTTSSSCGGGEEEEE-EETTSCEEEECSSCTTTCTTTTCCCCCE
T ss_pred             h-CEEEEEEEeCC-ceEEEEEE---EEEEeC----CCCCcccccccccceE-EecCCCeEEEEecccccccCCCCCCEEE
Confidence            9 99999999988 66554444   444432    233332111   2233 8899999999998      789999999


Q ss_pred             EEeCCcccccC-CceEEecceEEEeccCCCCCeEEEEEEE-cCCCCc---eeEEEEEEecCcccccccceEEEEeeeecc
Q psy14542        256 WYKQDSPVEES-DRIQRIGSSLSISHVEESDSGVWNCVAN-NSEGQD---KMQLFIQYAHGKYHMLSSGELIIHQVDEKN  330 (371)
Q Consensus       256 W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~-n~~g~~---~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~  330 (371)
                      |++++..+... .++...++.|.|.++..+|+|.|+|.|. |..|..   ...+.+.+..+..                 
T Consensus       143 W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~-----------------  205 (315)
T 1itb_B          143 WYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENK-----------------  205 (315)
T ss_dssp             EEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCC-----------------
T ss_pred             EEECCEECCCccceEeecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCC-----------------
Confidence            99999988543 4455677899999999999999999999 788876   4445454442111                 


Q ss_pred             ccccccccccccce-eeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        331 KRLLSAAKMFEKHR-ILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       331 ~~~~~~~~~~~~~~-~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                         ..+|.+...+. ...+.+|+.+.|.|.+.|.|+|.+.|+
T Consensus       206 ---~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~  244 (315)
T 1itb_B          206 ---PTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWK  244 (315)
T ss_dssp             ---CCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEE
T ss_pred             ---CCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEE
Confidence               01111222222 237889999999999999999999995

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.93  E-value=6e-24  Score=179.84  Aligned_cols=237  Identities=18%  Similarity=0.227  Sum_probs=161.0

Q ss_pred             eeeEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccce
Q psy14542         97 LVEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE  175 (371)
Q Consensus        97 ~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~  175 (371)
                      +|.+...+.. .+.+|+.++|.|.+.+.+. +.+.|++++..+.......              ......+     ....
T Consensus         4 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~-~~v~W~~~~~~~~~~~~~~--------------~~~~~~~-----~~~~   63 (305)
T 2nzi_A            4 APHFKEELRNLNVRYQSNATLVCKVTGHPK-PIVKWYRQGKEIIADGLKY--------------RIQEFKG-----GYHQ   63 (305)
T ss_dssp             CCEEEECCCCEEECTTCCEEEEEEEECSSC-CEEEEEETTEECCCCSSSE--------------EEEEETT-----TEEE
T ss_pred             CCeeeecccceEEeCCCcEEEEEEEeCCCC-CeEEEEECCEEcccCCCeE--------------EEEECCC-----CEEE
Confidence            4555554443 4489999999999988877 8999999998876432110              0000000     1147


Q ss_pred             EEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceE
Q psy14542        176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK  255 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~  255 (371)
                      |.|.+++.+| +|.|+|.+.|. .|......   .|.|...+....|.....+.... +..|+.+.|.|.+.|.|.+.+.
T Consensus        64 L~i~~v~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V~~~p~~~~~~~~~~~~~~~-~~~g~~~~l~C~~~g~p~p~i~  137 (305)
T 2nzi_A           64 LIIASVTDDD-ATVYQVRATNQ-GGSVSGTA---SLEVEVPAKIHLPKTLEGMGAVH-ALRGEVVSIKIPFSGKPDPVIT  137 (305)
T ss_dssp             EEESSCCGGG-CSEEEEEEEET-TEEEEEEE---EEEECEEEEECCCHHHHSSCCEE-EETTCCEEEEEEEEEESCCEEE
T ss_pred             EEEccCChhh-CeEEEEEEEcC-CCCccceE---EEEEecCCccCCCccccccccEE-ecCCCEEEEEEEECCCCCCEEE
Confidence            9999999999 99999999998 77666666   77777322211222111223344 7889999999999999999999


Q ss_pred             EEeCCcccccCCceEE----ecceEEEec-cCCCCCeEEEEEEEcCCCCceeEEEEEEecCcccccccceEEEEeeeecc
Q psy14542        256 WYKQDSPVEESDRIQR----IGSSLSISH-VEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKN  330 (371)
Q Consensus       256 W~~~~~~~~~~~~~~~----~~~~l~i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~  330 (371)
                      |++++..+....++..    ....|.|.+ +..+|+|.|+|.|.|..|....++.|.|..+|..+   ..+.+..+. +.
T Consensus       138 W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p---~~~~~~~~~-~~  213 (305)
T 2nzi_A          138 WQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPP---RGVKVSDVS-RD  213 (305)
T ss_dssp             EEESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCC---EEEEEESCC-SS
T ss_pred             EEECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCC---CCceeeecc-CC
Confidence            9999998887766653    235799999 99999999999999999999999999998776522   111111000 00


Q ss_pred             ccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        331 KRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                      .-.+    .+..    ....|....+.|.+...+.+...|+
T Consensus       214 ~v~l----~w~~----p~~~g~~~i~~y~v~~~~~~~~~w~  246 (305)
T 2nzi_A          214 SVNL----TWTE----PASDGGSKITNYIVEKCATTAERWL  246 (305)
T ss_dssp             CEEE----EEEC----CSCCSBSCEEEEEEEEEETTSCCEE
T ss_pred             EEEE----EEcC----CccCCCCceeEEEEEEecCCCCccE
Confidence            0000    0000    0123555667888888887877773

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.93  E-value=6.4e-24  Score=167.68  Aligned_cols=183  Identities=19%  Similarity=0.317  Sum_probs=139.8

Q ss_pred             ceeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccc
Q psy14542         96 ELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG  174 (371)
Q Consensus        96 ~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~  174 (371)
                      .+|.+...+. ..+.+|+.+.|.|.+.+.+. +.+.|++++..+.....+.+...                +     ...
T Consensus         6 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~----------------~-----~~~   63 (197)
T 3lcy_A            6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPL-PDIKWYRFGKELIQSRKYKMSSD----------------G-----RTH   63 (197)
T ss_dssp             EEEEEEECCCCEEEETTSEEEEEEEEEEESC-CEEEEEETTEEECCCSSEEEEES----------------S-----SEE
T ss_pred             CCCcccccCCceEEeCCCcEEEEEEEecCCC-CEEEEEECCEECCCCccEEEEeC----------------C-----CEE
Confidence            4555555544 34489999999999988776 79999999988865433222110                0     014


Q ss_pred             eEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceee---eeeeeeeeecCCeEEEEEEeecCCC
Q psy14542        175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF---EKHRILNVKKDESVILPCSAQGNPL  251 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~---~~~~~~~~~~g~~~~l~C~~~~~p~  251 (371)
                      .|.|.+++.+| .|.|+|.+.+. .+......   .+.|.     .+|.+..   ...... +..|+.+.|.|.+.+.|.
T Consensus        64 ~L~i~~~~~~d-~G~Y~C~~~n~-~~~~~~~~---~l~v~-----~~p~~~~~~~~~~~~~-~~~g~~~~l~C~~~~~p~  132 (197)
T 3lcy_A           64 TLTVMTEEQED-EGVYTCIATNE-VGEVETSS---KLLLQ-----ATPQFHPGYPLKEKYY-GAVGSTLRLHVMYIGRPV  132 (197)
T ss_dssp             EEEEECCSGGG-CEEEEEEEECS-SCEEEEEE---EEEEE-----EEEEECTTSCCCSEEE-EETTSCEEEEEEEEEESC
T ss_pred             EEEEecCCccC-CEEEEEEEECC-CCceeEEE---EEEEE-----cCCCCCCCccCCccee-ecCCCeEEEEEEEeeeeC
Confidence            79999999999 99999999988 66666665   67776     3333322   122333 789999999999999999


Q ss_pred             CceEEEeCCcccccCCceEEec----ceEEEeccCC-CCCeEEEEEEEcCCCCceeEEEEEEecC
Q psy14542        252 PTIKWYKQDSPVEESDRIQRIG----SSLSISHVEE-SDSGVWNCVANNSEGQDKMQLFIQYAHG  311 (371)
Q Consensus       252 ~~v~W~~~~~~~~~~~~~~~~~----~~l~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  311 (371)
                      +.+.|++++..+....++....    +.|.|.++.. +|+|.|+|.|.|..|....++.|.|.++
T Consensus       133 p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~k  197 (197)
T 3lcy_A          133 PAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK  197 (197)
T ss_dssp             CEEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEECC
T ss_pred             CeeEEeECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEecC
Confidence            9999999999988777666433    5799999984 8999999999999999999999988753

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.93  E-value=4.4e-24  Score=176.52  Aligned_cols=200  Identities=15%  Similarity=0.229  Sum_probs=147.2

Q ss_pred             eEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEE
Q psy14542         99 EIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELI  177 (371)
Q Consensus        99 ~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~  177 (371)
                      .+...+.. .+.+|+.+.|.|.+.+.+.+..+.|++++..+....                               ..|.
T Consensus         3 ~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~~-------------------------------~~l~   51 (262)
T 3rjd_A            3 VITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST-------------------------------PSYR   51 (262)
T ss_dssp             EEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCCS-------------------------------SEEE
T ss_pred             eEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeeccC-------------------------------CeEE
Confidence            34444444 558999999999998887734999999998775431                               5788


Q ss_pred             EEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEe-ecCCCCceEE
Q psy14542        178 IHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSA-QGNPLPTIKW  256 (371)
Q Consensus       178 i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W  256 (371)
                      |.+++.+| .|.|+|.+.+. .+.  ...   .+.|.     .++ +...+.... +.+|+.+.|.|.+ .+.|.+.+.|
T Consensus        52 i~~~~~~d-~G~Y~C~~~~~-~~s--~~~---~l~v~-----~~~-~~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~v~W  117 (262)
T 3rjd_A           52 ITSASVND-SGEYRCQRGLS-GRS--DPI---QLEIH-----RGW-LLLQVSSRV-FTEGEPLALRCHAWKDKLVYNVLY  117 (262)
T ss_dssp             ESSCCGGG-CEEEEEEESSS-CCC--CCE---EEEEE-----CSS-EEEEESCSE-EETTSCEEEEEEEGGGCCCEEEEE
T ss_pred             EecCCccc-CeEEEEEEecC-Ccc--ccE---EEEEe-----ccc-eEecCCCeE-EecCCeEEEEEEccCCCCCceEEE
Confidence            99999999 99999999876 332  233   56665     333 233334444 8899999999999 6788889999


Q ss_pred             EeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcccccccceEEEEeeeecccccccc
Q psy14542        257 YKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSA  336 (371)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~  336 (371)
                      ++++..+...    ..++.|.|.++..+|+|.|+|.|.|..+.....+.|.|...+..+      .+.  ..+..     
T Consensus       118 ~~~g~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p------~~~--~~~~~-----  180 (262)
T 3rjd_A          118 YRNGKAFKFF----HWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAP------VLN--ASVTS-----  180 (262)
T ss_dssp             EETTEEEEEE----EECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCC------EEE--ESSCS-----
T ss_pred             EECCcccccc----CCCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCC------eEe--ecCce-----
Confidence            9998876432    246789999999999999999999999888888888888642200      022  22211     


Q ss_pred             ccccccceeeeeecCCeEEEeeeeecCCC-Ccccc
Q psy14542        337 AKMFEKHRILNVKKDESVILPCSAQGNPL-PTIKY  370 (371)
Q Consensus       337 ~~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~i~W  370 (371)
                                .+.+|+.+.|.|.+.|.|+ |.+.|
T Consensus       181 ----------~~~~g~~~~l~C~~~~~p~~p~~~~  205 (262)
T 3rjd_A          181 ----------PLLEGNLVTLSCETKLLLQRPGLQL  205 (262)
T ss_dssp             ----------SEETTCCEEEEEECCCCCC-----E
T ss_pred             ----------eecCCCeEEEEeEcccCCCCCCccE
Confidence                      5779999999999999987 65433

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.93  E-value=7.4e-25  Score=184.05  Aligned_cols=203  Identities=12%  Similarity=0.166  Sum_probs=149.6

Q ss_pred             ceeeEecCCcee-eecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccc
Q psy14542         96 ELVEIASSNQVV-VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG  174 (371)
Q Consensus        96 ~~~~~~~~~~~~-~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~  174 (371)
                      .+|.+...+... +.+|+.++|.|.+.+     .+.|++++..+...                            .....
T Consensus        11 ~~P~i~~~~~~~~v~~G~~v~l~C~~~~-----~i~W~~~~~~~~~~----------------------------~~~~~   57 (290)
T 2o26_X           11 SPPSIHPAQSELIVEAGDTLSLTCIDPD-----FVRWTFKTYFNEMV----------------------------ENKKN   57 (290)
T ss_dssp             -CCEESSCSSEEEEETTSCEEEEEECTT-----EEEEEEECSSSCEE----------------------------EECSS
T ss_pred             CCCEEeCCCCeEEEcCCCcEEEEECCCC-----cEEEecCCcceeee----------------------------cCCCc
Confidence            456666544443 489999999999987     89999988755110                            00116


Q ss_pred             eEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCC-Cc
Q psy14542        175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL-PT  253 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~  253 (371)
                      .|.|.+++.+| +|.|+|.+.+   |. ....   .|.|.     .+|.......... +..|+.+.|.|.+.+ |. +.
T Consensus        58 ~L~i~~~~~~d-~G~Y~C~~~n---g~-~~~~---~l~V~-----~~~~~~~~~~~~~-~~~g~~v~l~C~~~~-p~~~~  122 (290)
T 2o26_X           58 EWIQEKAEATR-TGTYTCSNSN---GL-TSSI---YVFVR-----DPAKLFLVGLPLF-GKEDSDALVRCPLTD-PQVSQ  122 (290)
T ss_dssp             EEEETTCCGGG-CEEEEEEESS---SC-EEEE---EEEEE-----CSSCCBCCCCCEE-EETTSCEEECCCBSC-CSCEE
T ss_pred             eEEEeccCHHh-CeEEEEEeeC---Cc-cEEE---EEEEe-----CCCcccccccceE-EecCCeEEEeCcCCC-CCCce
Confidence            89999999999 9999999998   32 3344   67776     4444444444455 889999999999985 77 89


Q ss_pred             eEE-EeCCcccccCCceEE-ecceEEEeccCCCCCe-EEEEEEEcCCCCc-eeEEEEEEe----cCcccccccceEEEEe
Q psy14542        254 IKW-YKQDSPVEESDRIQR-IGSSLSISHVEESDSG-VWNCVANNSEGQD-KMQLFIQYA----HGKYHMLSSGELIIHQ  325 (371)
Q Consensus       254 v~W-~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G-~Y~C~a~n~~g~~-~~~~~l~v~----~~p~~~~~~~~~~~~~  325 (371)
                      +.| +++|..+..+.++.. .++.|.|.++..+|+| .|+|.|.|..+.. +..+.|.|.    .+|.         +. 
T Consensus       123 v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~---------i~-  192 (290)
T 2o26_X          123 YSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPV---------VS-  192 (290)
T ss_dssp             EEEEETTSCCCCTTCEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCE---------EE-
T ss_pred             EEEEeCCCcCCCCCCceeeCCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCc---------cc-
Confidence            999 568888877666553 3578999999999999 9999999986653 345777776    3444         33 


Q ss_pred             eeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCc-cccC
Q psy14542        326 VDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT-IKYR  371 (371)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-i~W~  371 (371)
                       ..|              ....+.+|+.++|.|.+.|.|.|. ++|+
T Consensus       193 -~~~--------------~~~~v~~G~~v~l~C~~~g~p~p~~i~W~  224 (290)
T 2o26_X          193 -VPE--------------TSHLLKKGDTFTVVCTIKDVSTSVNSMWL  224 (290)
T ss_dssp             -CSC--------------SBCCCCTTCCEEEEEEEEESSTTCEEEEE
T ss_pred             -cCC--------------CcceEecCCcEEEEEEEecCCcceeEEEe
Confidence             111              122678999999999999999997 9996

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.93  E-value=2.6e-24  Score=182.69  Aligned_cols=225  Identities=12%  Similarity=0.140  Sum_probs=148.7

Q ss_pred             eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCc
Q psy14542        107 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDR  186 (371)
Q Consensus       107 ~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~  186 (371)
                      .+.+|+.+.|.|......+.+.+.|++++..+.....+.+...               .      ....|.|.+++.+| 
T Consensus        12 ~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~---------------~------~~~~L~I~~~~~~D-   69 (312)
T 2y23_A           12 NVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESK---------------G------NKTKMTFKDLGMDD-   69 (312)
T ss_dssp             EECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEE---------------T------TEEEEEESSCCGGG-
T ss_pred             EEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEe---------------C------CEEEEEECcCCccC-
Confidence            3478999999999864333389999999998775432211110               0      11479999999999 


Q ss_pred             cceeEEEeeccccceeeeeeccceeeeecchh-------ccccceeeeee-eeeeeecCCeEEEEEEee-cCCCCceEEE
Q psy14542        187 YRSYQCRGVNKLTGASLLSVNRGRLSLTENKR-------LLSAAKMFEKH-RILNVKKDESVILPCSAQ-GNPLPTIKWY  257 (371)
Q Consensus       187 ~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~-------~~~p~~~~~~~-~~~~~~~g~~~~l~C~~~-~~p~~~v~W~  257 (371)
                      .|.|+|.+.+. .|... +.   .+.|.....       ..+|.+..... ... +..|+.+.|.|.+. +.|.+.+.|+
T Consensus        70 ~G~Y~C~~~n~-~g~~~-s~---~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~-v~~G~~v~l~C~~~~~~p~~~v~W~  143 (312)
T 2y23_A           70 LGIYSCDVTDT-DGIAS-SY---LIDEEELKRLLALSHEHKFPTVPVKSELAVE-ILEKGQVRFWMQAEKLSGNAKVNYI  143 (312)
T ss_dssp             CEEEEEEESSS-CCCCE-EE---EECHHHHHHHHHHHHHHHSCBCCEEEEEEEE-ECSSSCEEEEEEESCCCSSCEEEEE
T ss_pred             CEEEEEEEEeC-CCcEE-EE---EEEEeeeeeeecccccCCCCccccccCCceE-EeeCCCEEEEEEEEeCCCCCEEEEE
Confidence            99999999997 55332 33   444432110       01455554443 444 89999999999998 8899999999


Q ss_pred             eCCcccccCCceEEec----c--eEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcccccccceEEEEeeeec--
Q psy14542        258 KQDSPVEESDRIQRIG----S--SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEK--  329 (371)
Q Consensus       258 ~~~~~~~~~~~~~~~~----~--~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~--  329 (371)
                      +++..+..+.++....    +  .|.|.++..+|+|.|+|.|.|..+.....  +.+.....         ...+..+  
T Consensus       144 ~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~--~~~~~~~~---------~~~~~~~~~  212 (312)
T 2y23_A          144 FNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHST--VVLVGDVF---------KKLQKEAEF  212 (312)
T ss_dssp             ETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCEEEEE--EEECTHHH---------HHHHHHHHH
T ss_pred             ECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCceEEEE--EEEcchhh---------hhhcccccc
Confidence            9999988877665332    2  39999999999999999998755443333  33321100         0000000  


Q ss_pred             ---cccccccccccccceeeeeecCCeEEEeeeeecCCCC-ccccC
Q psy14542        330 ---NKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP-TIKYR  371 (371)
Q Consensus       330 ---~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~  371 (371)
                         ......+|.+...+ ...+.+|+.+.|.|.+.|.|+| .++|+
T Consensus       213 ~~~~~~~~~~p~~~~~~-~~~v~~G~~~~l~C~~~~~p~~~~v~W~  257 (312)
T 2y23_A          213 QRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWY  257 (312)
T ss_dssp             HHHHHHHHHSSEEEEEE-EEEEETTTEEEEEEEEESCCSSCEEEEE
T ss_pred             cccchhhccCCceeecc-eEEEeCCCEEEEEEEEcCCCCCCEEEEe
Confidence               00000112222222 2478899999999999999998 99995

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.93  E-value=7.8e-24  Score=190.17  Aligned_cols=264  Identities=13%  Similarity=0.178  Sum_probs=165.8

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCC-C-eeEEEeCCEEEee---------C-----CeeEEEEccCCcCCCeE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLS-S-AKAWLKDGLVLRR---------N-----SDEVLVLDRVQREDAGM   73 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~-~-~~~W~~~~~~~~~---------~-----~~~~l~i~~~~~~d~G~   73 (371)
                      +|.+...+..  .+.+|+.++|.|.+....|. + .+.|++++.....         .     ....|.|.++..+|+|.
T Consensus       127 ~P~i~~~~~~--~~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~  204 (475)
T 1iga_A          127 SPKVFPLSLC--STQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKS  204 (475)
T ss_pred             CCeEEecCcc--ccCCCCeEEEEEEEeeecCCCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCce
Confidence            4555554432  23789999999976655465 4 8999998753210         1     12358888998899999


Q ss_pred             EEEEEEcCCCCe-EEEEEEEEec-----------------ceeeE-ecCCcee-eecCCcEEEEEEecCCCC--CceEEE
Q psy14542         74 YQCHVSADDDSA-QMSAQVILGG-----------------ELVEI-ASSNQVV-VDVGHRIELHCRVSPKRL--SSAKAW  131 (371)
Q Consensus        74 Y~C~~~~~~~~~-~~~~~l~v~~-----------------~~~~~-~~~~~~~-~~~g~~v~l~C~~~~~~~--~~~v~W  131 (371)
                      |+|.+.+..+.. ...+.|.|..                 .++.+ ...+... +.+|+.+.|.|.+.+.++  ++.++|
T Consensus       205 Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W  284 (475)
T 1iga_A          205 VTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW  284 (475)
T ss_pred             EEEEEEECCCCceeeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE
Confidence            999999887632 3334433310                 12333 2233332 378999999999987643  268999


Q ss_pred             eeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeecccee
Q psy14542        132 LKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRL  211 (371)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l  211 (371)
                        ++..+.......     ......|         .+.  ..+.|.|.++..+| .|.|+|.+.|. .+......   .+
T Consensus       285 --~~~~~~~~~~~~-----~~~~~~g---------~~~--~~~~L~I~~~~~~d-~G~Y~C~a~n~-~~~~~~~~---~v  341 (475)
T 1iga_A          285 --TPSSGKSAVQGP-----PERDLCG---------CYS--VSSVLPGCAEPWNH-GKTFTCTAAYP-ESKTPLTA---TL  341 (475)
T ss_pred             --CCCCcCCccccC-----ceECCCC---------CEE--EEEEEEEchHHhcc-CCcEEEEEEcC-CCCCceEE---Ee
Confidence              333332211000     0000112         221  23679999999999 99999999998 55433222   33


Q ss_pred             eeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCC--CceEEEeCCcccccCCce----E-E---------ecce
Q psy14542        212 SLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL--PTIKWYKQDSPVEESDRI----Q-R---------IGSS  275 (371)
Q Consensus       212 ~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~----~-~---------~~~~  275 (371)
                      .+.  ....+|.+...+.....+..|+.+.|.|.+.|.++  +.+.|+++|..+......    . .         ..+.
T Consensus       342 ~~~--~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~  419 (475)
T 1iga_A          342 SKS--GNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSI  419 (475)
T ss_pred             ecC--CCCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCceeecccccccCCCCCcEEEEEE
Confidence            221  11156666554433222678999999999998633  589999999887654211    1 1         1135


Q ss_pred             EEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        276 LSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       276 l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      |.|.....+|+|.|+|.|.|.....
T Consensus       420 L~i~~~~~~~~g~YtC~a~n~~l~~  444 (475)
T 1iga_A          420 LRVAAEDWKKGDTFSCMVGHEALPL  444 (475)
T ss_pred             EEEChHHhcCCCEEEEEEEcCCCCC
Confidence            6777777788999999999987653

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.93  E-value=1.9e-24  Score=171.41  Aligned_cols=184  Identities=14%  Similarity=0.201  Sum_probs=131.1

Q ss_pred             eeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEE
Q psy14542         98 VEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELI  177 (371)
Q Consensus        98 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~  177 (371)
                      |.+.......+.+|+.+.|.|.+....+.+.++|+++|..+.....+.+.....    .|               ...|.
T Consensus         4 p~~~~~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~----~g---------------~~~L~   64 (207)
T 3rbs_A            4 PFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRN----TG---------------IIEMF   64 (207)
T ss_dssp             --CCEEEEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTT----TC---------------EEEEE
T ss_pred             CeeecCCceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCC----CC---------------EEEEE
Confidence            344444455568999999999997643338999999999997665433322110    00               13699


Q ss_pred             EEEeecCCccceeEEEeeccccceeeeeeccceeeeecc----------------hhccccceeeeeeeeeeeecCCeEE
Q psy14542        178 IHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTEN----------------KRLLSAAKMFEKHRILNVKKDESVI  241 (371)
Q Consensus       178 i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~----------------~~~~~p~~~~~~~~~~~~~~g~~~~  241 (371)
                      |.+++.+| +|.|+|.+.|. ...  ...   .+.+...                ....+|.+.... ... +.+|+.+.
T Consensus        65 I~~v~~~D-~G~Y~C~a~Ng-~a~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~-v~~g~~v~  135 (207)
T 3rbs_A           65 MEKLQDED-EGTYTFQLQDG-KAT--NHS---TVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWE-VTGECNVL  135 (207)
T ss_dssp             ESCCCGGG-CEEEEEEEEET-TEE--EEE---EEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEE-EETTTEEE
T ss_pred             ECCCChhh-CEEEEEEEECC-CeE--EEE---EEEEEccchhhhcccccccccccccCCCCceEecC-CcE-EcCCCcEE
Confidence            99999999 99999999884 322  221   2211100                000245555444 344 89999999


Q ss_pred             EEEEeecC-CCCceEEEeCCcccccCCceEEec--ceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542        242 LPCSAQGN-PLPTIKWYKQDSPVEESDRIQRIG--SSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA  309 (371)
Q Consensus       242 l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  309 (371)
                      |.|.+.|. |.|.++|+++|..+..+.++....  .+|.|.++..+|+|.|+|.|.|..|....++.|.+.
T Consensus       136 l~C~v~g~~P~p~i~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~~  206 (207)
T 3rbs_A          136 LKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE  206 (207)
T ss_dssp             EEEEEESCCTTCEEEEEETTEEECCCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred             EEEEEeCCCCCCEEEEEECCEECCCCCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEecC
Confidence            99999998 999999999999987766554322  369999999999999999999999999988887653

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.92  E-value=7.1e-24  Score=166.46  Aligned_cols=175  Identities=21%  Similarity=0.313  Sum_probs=137.8

Q ss_pred             eeeEecCCceeeec-CCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccc
Q psy14542         97 LVEIASSNQVVVDV-GHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG  174 (371)
Q Consensus        97 ~~~~~~~~~~~~~~-g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~  174 (371)
                      +|.+...+...+.+ |+.+.|.|.+.+.+. .+.+.|++++..+.....                        ..  .+.
T Consensus         3 ~P~i~~~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~------------------------~~--~~~   56 (190)
T 2wv3_A            3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK------------------------NA--SNM   56 (190)
T ss_dssp             CCEEEECCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCB------------------------CC--SEE
T ss_pred             CCcccccceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccce------------------------Ee--ccE
Confidence            45566666666655 999999999987653 368999999987764321                        00  236


Q ss_pred             eEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCce
Q psy14542        175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTI  254 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v  254 (371)
                      .|.|.+++.+| +|.|+|.+.+.  +......   .|.|.     .+|.+...+.... +..|+.+.|.|.+.|.|.+.+
T Consensus        57 ~L~i~~~~~~d-~G~Y~C~~~n~--~~~~~~~---~l~V~-----~~p~~~~~~~~~~-~~~g~~v~l~C~~~g~p~p~i  124 (190)
T 2wv3_A           57 EYRINKPRAED-SGEYHCVYHFV--SAPKANA---TIEVK-----AAPDITGHKRSEN-KNEGQDAMMYCKSVGYPHPEW  124 (190)
T ss_dssp             EEEESSCCGGG-CEEEEEEEEET--TEEEEEE---EEEEE-----CCCEEEEECSEEE-EETTSCEEEEEEEECSSCCEE
T ss_pred             EEEEecCCccc-CEEEEEEEEeC--CcccccE---EEEEe-----cCCcccccCCcce-eeCCCcEEEEEEeCccCCCce
Confidence            89999999999 99999999987  5555555   78887     6777777666666 999999999999999999999


Q ss_pred             EEEe--CCcccc---cCCceEEec----ceEEEeccC-CCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542        255 KWYK--QDSPVE---ESDRIQRIG----SSLSISHVE-ESDSGVWNCVANNSEGQDKMQLFIQYA  309 (371)
Q Consensus       255 ~W~~--~~~~~~---~~~~~~~~~----~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~~~~l~v~  309 (371)
                      .|++  ++..+.   ...++....    +.|.|.++. .+|+|.|+|.|.|..|....++.|.|.
T Consensus       125 ~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          125 MWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             EEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            9999  666543   334444322    379999999 799999999999999999999888875

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.92  E-value=1e-24  Score=185.45  Aligned_cols=224  Identities=17%  Similarity=0.177  Sum_probs=148.4

Q ss_pred             EEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCC
Q psy14542         87 MSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDG  166 (371)
Q Consensus        87 ~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~  166 (371)
                      ..+...+. .+|.+...+...+.+|++++|.|.+.+. . +.+.|+|++..+....                        
T Consensus        15 ~~~~~~~~-~~P~i~~~p~~~v~~G~~v~L~C~~~~~-~-~~~~W~k~g~~~~~~~------------------------   67 (316)
T 3vh8_G           15 KGSHMGGQ-DKPFLSAWPSAVVPRGGHVTLRCHYRHR-F-NNFMLYKEDRIHIPIF------------------------   67 (316)
T ss_dssp             ----------CCEEEEESCSEEETTSCEEEEEEBTTB-C-CSEEEEESSCSSSCHH------------------------
T ss_pred             cccccCCC-CCCEeeccCCCccCCCCCEEEEEEccCC-C-ceEEEEeCCCccceee------------------------
Confidence            33445555 6777777777667899999999999887 3 6999999987643210                        


Q ss_pred             ceeEeccceEEEEEeecCCccceeEEEeecccc----ceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEE
Q psy14542        167 KYHMLSSGELIIHQVDESDRYRSYQCRGVNKLT----GASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVIL  242 (371)
Q Consensus       167 ~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~----~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l  242 (371)
                       ........|.|.+++.+| +|.|+|.+.+...    +......   .|.|...  ..+|.+...+.. . +.+|+.++|
T Consensus        68 -~~~~~~~~L~I~~v~~~D-~G~Y~C~a~~~~~~~~~~~~s~~~---~l~V~~~--~~~p~~~~~~~~-~-v~~G~~v~L  138 (316)
T 3vh8_G           68 -HGRIFQESFNMSPVTTAH-AGNYTCRGSHPHSPTGWSAPSNPV---VIMVTGN--HRKPSLLAHPGP-L-VKSGERVIL  138 (316)
T ss_dssp             -HHCCBSSCEEECSCCGGG-CEEEEEEEBCSSSSSSBCCCCCCE---EEEEECS--SCCCEEEEESCS-E-EETTCCEEE
T ss_pred             -cCCcceEEEEECCCCccc-CeEEEEEEEcCCCCcceecCCCcE---EEEEecC--CCCCeEEecCCC-c-cCCCCeEEE
Confidence             000112679999999999 9999999876411    1111222   4555421  134555544333 3 789999999


Q ss_pred             EEEeecCCCCceEEEeCCcccccCCceE-----EecceEEEeccCCCCCeEEEEEEEcCCCCc-----eeEEEEEEecCc
Q psy14542        243 PCSAQGNPLPTIKWYKQDSPVEESDRIQ-----RIGSSLSISHVEESDSGVWNCVANNSEGQD-----KMQLFIQYAHGK  312 (371)
Q Consensus       243 ~C~~~~~p~~~v~W~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-----~~~~~l~v~~~p  312 (371)
                      .|.+. .+.+.+.|++++..+.......     ...+.|.|.++..+|+|.|+|.|.|..|..     +..+.|.|...+
T Consensus       139 ~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~  217 (316)
T 3vh8_G          139 QCWSD-IMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPY  217 (316)
T ss_dssp             EEEES-SCCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSS
T ss_pred             EEcCC-CCCcEEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCC
Confidence            99995 4567899999998775432111     245679999999999999999999988752     555677776432


Q ss_pred             ccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        313 YHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                      ..+      .+.  ..|..               .+.+|+.++|.|.+. .|.+.+.|+
T Consensus       218 ~~p------~i~--~~~~~---------------~v~~G~~v~L~C~~~-~~~~~~~W~  252 (316)
T 3vh8_G          218 EKP------SLS--AQPGP---------------KVQAGESVTLSCSSR-SSYDMYHLS  252 (316)
T ss_dssp             CCC------EEE--EESCS---------------CCCTTSCCEEEEEES-SCCSEEEEE
T ss_pred             CCC------eEE--eCCCC---------------eecCCCcEEEEEECC-CCCcEEEEE
Confidence            200      033  22222               467899999999997 477899995

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.92  E-value=5.3e-24  Score=167.90  Aligned_cols=184  Identities=19%  Similarity=0.263  Sum_probs=136.3

Q ss_pred             eeEecCCce-eeecCCcEEEEEEec-CCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccce
Q psy14542         98 VEIASSNQV-VVDVGHRIELHCRVS-PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE  175 (371)
Q Consensus        98 ~~~~~~~~~-~~~~g~~v~l~C~~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~  175 (371)
                      +.+...+.. .+.+|+.++|.|.+. +.+. +.+.|++++..+.........+....            ++.......+.
T Consensus         3 ~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~-~~v~W~~~g~~l~~~~~~~~~~~~~~------------~~~~~~~~~~~   69 (195)
T 2c5d_C            3 SPFVGNPGNITGARGLTGTLRCQLQVQGEP-PEVHWLRDGQILELADSTQTQVPLGE------------DEQDDWIVVSQ   69 (195)
T ss_dssp             CSEEECCCCEEECTTCCEEEEEEEEEESSC-CCCEEEETTEECCSCEEEEEEEECSS------------STTSEEEEEEE
T ss_pred             CeeccChhheEEecCCcEEEecccccCCCC-cEEEEEECCEEcccCCCCceEEEEcc------------ccccceeeccE
Confidence            344444443 448999999999998 7776 89999999998766532111111000            11111111368


Q ss_pred             EEEEEeecCCccceeEEEeeccccceeeee-eccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCC-c
Q psy14542        176 LIIHQVDESDRYRSYQCRGVNKLTGASLLS-VNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP-T  253 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~-~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~  253 (371)
                      |.|.+++..| .|.|+|.+.+. .+..... .   .|.|.     .+|.+...+.... +..|+.+.|.|.+.|.|.+ .
T Consensus        70 L~i~~~~~~d-~G~Y~C~~~~~-~~~~~~~~~---~l~V~-----~~p~~~~~~~~~~-~~~g~~~~l~C~~~g~p~p~~  138 (195)
T 2c5d_C           70 LRITSLQLSD-TGQYQCLVFLG-HQTFVSQPG---YVGLE-----GLPYFLEEPEDRT-VAANTPFNLSCQAQGPPEPVD  138 (195)
T ss_dssp             EEESSCCSTT-CEEEEEEEEET-TEEEECCCE---EEEEC-----CSCEEEECCCCEE-ECTTCCEEEEEEEECSSCCCE
T ss_pred             EEEEeccccC-CcEEEEEEEeC-CCceecccE---EEEEe-----cCCeEEcCCCcEE-EcCCCEEEEEeECCCCCCCCE
Confidence            9999999999 99999999987 5443222 4   67777     6777776666666 8999999999999999999 9


Q ss_pred             eEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCce-eEEEEEE
Q psy14542        254 IKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDK-MQLFIQY  308 (371)
Q Consensus       254 v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v  308 (371)
                      +.|++++..+...... ..++.|.|.++.  |+|.|+|.|.|..|... ..+.|.|
T Consensus       139 v~W~~~~~~~~~~~~~-~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          139 LLWLQDAVPLATAPGH-GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             EEEEESSCBSSSSTTS-SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEECCEeccCCCCc-CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            9999999988765443 345689999887  79999999999999885 7888888

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.92  E-value=3.3e-24  Score=177.62  Aligned_cols=196  Identities=15%  Similarity=0.190  Sum_probs=142.0

Q ss_pred             eeecCCcEEEEEEecC-CCCC-ceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEe---
Q psy14542        107 VVDVGHRIELHCRVSP-KRLS-SAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQV---  181 (371)
Q Consensus       107 ~~~~g~~v~l~C~~~~-~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~---  181 (371)
                      .+.+|+.++|.|.+.+ .|.+ ..++|++++..+...    +..                       ....+.+..+   
T Consensus        14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~----~~~-----------------------~~~~~~~~~~~~~   66 (265)
T 2oz4_A           14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT----VTY-----------------------GNDSFSAKASVSV   66 (265)
T ss_dssp             EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCCE----EEE-----------------------CSSEEEEEEEEEE
T ss_pred             eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCce----Eee-----------------------CCCeEEEEeeccc
Confidence            4589999999999998 5541 399999999876541    000                       0123444443   


Q ss_pred             ecCCccce--eEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeC
Q psy14542        182 DESDRYRS--YQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQ  259 (371)
Q Consensus       182 ~~~d~~g~--y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~  259 (371)
                      +..| .|.  |+|.+.+. .+......   .|.|...   .+|.+.  ..... +.+|+.+.|.|.+.  |.+.+.|  +
T Consensus        67 ~~~d-~g~g~Y~C~a~n~-~~~~~~~~---~l~V~~~---p~p~~~--~~~~~-v~~G~~v~l~C~~~--p~~~i~W--~  131 (265)
T 2oz4_A           67 TAED-EGTQRLTCAVILG-NQSQETLQ---TVTIYSF---PAPNVI--LTKPE-VSEGTEVTVKCEAH--PRAKVTL--N  131 (265)
T ss_dssp             CGGG-CEEEEEEEEEEET-TEEEEEEE---EEEEECC---CCCEEE--ESCSE-EETTCEEEEEEECC--TTSEEEE--S
T ss_pred             cccc-CCcceEEEEEecC-CCCcEEEE---EEEEeCC---CCceee--cCCce-ecCCCcEEEEEEcc--CCCEEEE--C
Confidence            6677 774  99999998 66666565   7777632   123333  33444 88899999999988  8899999  7


Q ss_pred             CcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCC-CCce---eEEEEEEecCcccccccceEEEEeeeeccccccc
Q psy14542        260 DSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSE-GQDK---MQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLS  335 (371)
Q Consensus       260 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~~---~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~  335 (371)
                      |..+....    ..+.|.|..+..+|+|.|+|.|.|.. |...   ..+.|.|..+|.         +....        
T Consensus       132 g~~~~~~~----~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~---------~~~~~--------  190 (265)
T 2oz4_A          132 GVPAQPLG----PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPR---------LDERD--------  190 (265)
T ss_dssp             SCSSSCCS----SEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEE---------CCGGG--------
T ss_pred             CEEccCCC----CcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCc---------ccccc--------
Confidence            77774332    23568899999999999999998654 7655   778888888777         32011        


Q ss_pred             cccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        336 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       336 ~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                            .|....+.+|+.++|.|.+.|+|+|.++|+
T Consensus       191 ------~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~  220 (265)
T 2oz4_A          191 ------CPGNWTWPENSQQTPMCQAWGNPLPELKCL  220 (265)
T ss_dssp             ------SCSEEEEETTCEECCCCCCEEESCCEEEEE
T ss_pred             ------CCCccEEcCCCeEEEEeECccCCCCeEEEE
Confidence                  122337889999999999999999999996

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.92  E-value=6.2e-24  Score=167.38  Aligned_cols=177  Identities=17%  Similarity=0.286  Sum_probs=136.2

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEE
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQC   76 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C   76 (371)
                      ..+|.+...|.. ..+.+|++++|.|.+ .+.|.+.+.|++++..+...           ....|.|.+++.+|+|.|+|
T Consensus         3 ~~~P~~~~~~~~-~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   80 (194)
T 2a38_A            3 TQAPTFTQPLQS-VVVLEGSTATFEAHI-SGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSL   80 (194)
T ss_dssp             CEEEEEEECCCC-EEEETTSCEEEEEEE-EEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CCCCeEEccCCc-eEEECCCEEEEEEEE-EecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEE
Confidence            446778888877 899999999999964 56677899999988766543           35689999999999999999


Q ss_pred             EEEcCCCCeEEEEEEEEec--ceeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCc
Q psy14542         77 HVSADDDSAQMSAQVILGG--ELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQR  153 (371)
Q Consensus        77 ~~~~~~~~~~~~~~l~v~~--~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~  153 (371)
                      .+.+..+.....+.|.|..  .+|.+...+. ..+..|+.+.|.|.+.+.+. +.+.|++++..+.....+.+...    
T Consensus        81 ~~~n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-~~v~W~~~~~~~~~~~~~~~~~~----  155 (194)
T 2a38_A           81 KATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPT-PVVKFYRDGAEIQSSLDFQISQE----  155 (194)
T ss_dssp             EEEETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESC-CEEEEEETTEECCCSSSEEEEEE----
T ss_pred             EEEcCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecC-CeEEEEECCEECCCCCcEEEEEc----
Confidence            9999887777777777763  4455544443 34589999999999988877 88999999998765433221110    


Q ss_pred             CCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeee
Q psy14542        154 EDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSL  213 (371)
Q Consensus       154 ~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v  213 (371)
                                 .      ....|.|.++..+| .|.|+|.+.|. .|......   .|.|
T Consensus       156 -----------~------~~~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V  193 (194)
T 2a38_A          156 -----------G------DLYSLLIAEAYPED-SGTYSVNATNS-VGRATSTA---ELLV  193 (194)
T ss_dssp             -----------T------TEEEEEEEEECGGG-CEEEEEEEEET-TEEEEEEE---EEEE
T ss_pred             -----------C------CEEEEEECCCChhc-CeEEEEEEEeC-CCceEEEE---EEEE
Confidence                       0      01379999999999 99999999998 77666555   5554

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.92  E-value=1.2e-23  Score=168.22  Aligned_cols=176  Identities=17%  Similarity=0.215  Sum_probs=133.1

Q ss_pred             ecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccc
Q psy14542        109 DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYR  188 (371)
Q Consensus       109 ~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g  188 (371)
                      ..++.+.|.|.+.+.++.+.+.|++++..+.......+...               .      ....|.|.+++.+| +|
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~---------------~------~~~~L~i~~v~~~D-~G   72 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVT---------------G------EQIWLQINEPTPND-KG   72 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEE---------------T------TEEEEEEESCCGGG-CE
T ss_pred             EcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEe---------------C------CEEEEEECCCCccc-CE
Confidence            67889999999988764589999999998876533221110               0      11469999999999 99


Q ss_pred             eeEEEeeccccceeeeeeccceeeeecc---------------hhcccccee-eeeeeeeeeecCCeEEEEEEeecCCCC
Q psy14542        189 SYQCRGVNKLTGASLLSVNRGRLSLTEN---------------KRLLSAAKM-FEKHRILNVKKDESVILPCSAQGNPLP  252 (371)
Q Consensus       189 ~y~C~~~~~~~~~~~~~~~~~~l~v~~~---------------~~~~~p~~~-~~~~~~~~~~~g~~~~l~C~~~~~p~~  252 (371)
                      .|+|.+.+. .+......   .+.+...               .....|.+. ..+.... +..|+.+.|.|.+.|.|.+
T Consensus        73 ~Y~C~~~n~-~~~~~~~~---~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-v~~g~~~~l~C~~~g~p~p  147 (212)
T 2r15_A           73 KYVMELFDG-KTGHQKTV---DLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVT-IQEGKALNLTCNVWGDPPP  147 (212)
T ss_dssp             EEEEEEECS-SCEEEEEE---EECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEE-EETTCCEEEEEEEECSSCC
T ss_pred             EEEEEEecC-CcceEEEE---EEEEeeccchhhhccccCcccccccCCCcccccCCCcEE-EccCCeEEEEEEEcCCCCc
Confidence            999999997 66555544   5544310               000123333 2333444 8999999999999999999


Q ss_pred             ceEEEeCCcccccCCceEEec-----ceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecC
Q psy14542        253 TIKWYKQDSPVEESDRIQRIG-----SSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHG  311 (371)
Q Consensus       253 ~v~W~~~~~~~~~~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  311 (371)
                      .+.|++++..+....++....     ..|.|.++..+|+|.|+|.|.|..|....++.|.|..|
T Consensus       148 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  211 (212)
T 2r15_A          148 EVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP  211 (212)
T ss_dssp             EEEEEETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             eEEEEECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEcc
Confidence            999999999988877666433     28999999999999999999999999999999988754

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.92  E-value=8.1e-25  Score=185.46  Aligned_cols=228  Identities=17%  Similarity=0.260  Sum_probs=148.2

Q ss_pred             CCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEccc--CcCCCeeEEEEEeCCceeEe----ccceE
Q psy14542        103 SNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRV--QREDAGMYQCHIEDGKYHML----SSGEL  176 (371)
Q Consensus       103 ~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~g~y~~~~~~~~~~~~----~~~~l  176 (371)
                      .+...+..|++++|.|.+.+.++...++|+|++......    +.+...  .....+.|     .++..+.    .+.+|
T Consensus         6 ~p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~----~~~~~~~~~~~~~~~~-----~~r~~~~~~~~~~~sL   76 (308)
T 4fom_A            6 EPHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQT----VAVHHPQYGFSVQGEY-----QGRVLFKNYSLNDATI   76 (308)
T ss_dssp             CCSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEE----EEEECSSSCEEECTTT-----TTTEEESCCSSSBCCE
T ss_pred             CCEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCce----EEEecCCCCceecCcc-----cceEEeeccCCCceEE
Confidence            345566899999999998765554689999865432211    000000  00000000     1122111    23579


Q ss_pred             EEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEe-ecCCCCceE
Q psy14542        177 IIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSA-QGNPLPTIK  255 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~  255 (371)
                      .|.+++.+| +|.|+|.+.+...+......   .+.+...   ..+.....+.... ...|+.+.|.|.+ .|.|.+.+.
T Consensus        77 ~I~~v~~~D-~G~Y~C~a~n~~~~~~~~~~---~~~v~~~---~~~~~~~~~~~~~-~~~~~~~~l~C~~~~g~P~~~i~  148 (308)
T 4fom_A           77 TLHNIGFSD-SGKYICKAVTFPLGNAQSST---TVTVLVE---PTVSLIKGPDSLI-DGGNETVAAICIAATGKPVAHID  148 (308)
T ss_dssp             EECSCCGGG-CEEEEEEEEETTTEEEEEEE---EEEEEBC---CEEEEEECSSCCC-TTCSCEEEEEEEEEEEBSCCEEE
T ss_pred             EEccCCHHH-CEEEEEEEeeCCCcceeeee---EEEeeec---cccccccccceeE-EcCCceEEEEEEecCCcCCceEE
Confidence            999999999 99999999886345544444   5555522   1112222233333 5677899999985 579999999


Q ss_pred             EEeCCcccccCCceE-----EecceEEEeccCCCCCeEEEEEEEcCCCCc--eeEEEEEEecCcccccccceEEEEeeee
Q psy14542        256 WYKQDSPVEESDRIQ-----RIGSSLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQYAHGKYHMLSSGELIIHQVDE  328 (371)
Q Consensus       256 W~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~~  328 (371)
                      |++++..+.......     ...+.|.|..+..+|+|.|+|.|.|..|..  ..++.|.|..+|.         +. +..
T Consensus       149 W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~---------~~-~~~  218 (308)
T 4fom_A          149 WEGDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPE---------VS-VTG  218 (308)
T ss_dssp             ECCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEE---------EC-CBC
T ss_pred             EEECCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCe---------eE-Ecc
Confidence            999998876543221     223469999999999999999999988765  4455666666776         43 111


Q ss_pred             ccccccccccccccceeeeeecCCeEEEeeeeecCCCC-ccccC
Q psy14542        329 KNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP-TIKYR  371 (371)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~  371 (371)
                      +..              ..+.+|+.++|.|.+.|+|+| .++|+
T Consensus       219 ~~~--------------~~~~~g~~v~l~C~~~g~P~p~~v~W~  248 (308)
T 4fom_A          219 YDG--------------NWFVGRKGVNLKCNADANPPPFKSVWS  248 (308)
T ss_dssp             CCS--------------CEETTCCSCEEECCEEEESCEEEEECC
T ss_pred             cce--------------eeeeccccEEEEEEEecCCCCcEEEEE
Confidence            111              156688999999999999998 69996

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.92  E-value=1.7e-23  Score=167.29  Aligned_cols=191  Identities=26%  Similarity=0.376  Sum_probs=138.0

Q ss_pred             ceeeEecCCcee-eecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccc
Q psy14542         96 ELVEIASSNQVV-VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG  174 (371)
Q Consensus        96 ~~~~~~~~~~~~-~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~  174 (371)
                      .+|.+...+... +.+|+.+.|.|.+.+.+. +.+.|++++..+............               +     ...
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~-~~v~W~k~~~~~~~~~~~~~~~~~---------------~-----~~~   63 (212)
T 2yd6_A            5 TPPRFTRTPVDQTGVSGGVASFICQATGDPR-PKIVWNKKGKKVSNQRFEVIEFDD---------------G-----SGS   63 (212)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESC-CEEEEEETTEECCCTTEEEEEEGG---------------G-----TEE
T ss_pred             CCCeEEeCcceeEEecCCeEEEEEEEeeCCC-CEEEEEECCcCCCCCceeEEEEcC---------------C-----Cce
Confidence            455555555443 489999999999998777 899999999887654322111110               0     125


Q ss_pred             eEEEEEee-cCCccceeEEEeeccccceeeeeeccceeeeecchh--ccccceeeeeeeeeeeecCCeEEEEEEeecCCC
Q psy14542        175 ELIIHQVD-ESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKR--LLSAAKMFEKHRILNVKKDESVILPCSAQGNPL  251 (371)
Q Consensus       175 ~l~i~~~~-~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~--~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~  251 (371)
                      .|.|.++. .+| +|.|+|.+.+. .+......   .|.|.....  ...|.+...+.... +..|+.+.|.|.+.|.|.
T Consensus        64 ~L~i~~v~~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V~~~~~~~~~~p~~~~~~~~~~-~~~g~~v~l~C~~~g~p~  137 (212)
T 2yd6_A           64 VLRIQPLRTPRD-EAIYECVASNN-VGEISVST---RLTVLREDQIPRGFPTIDMGPQLKV-VERTRTATMLCAASGNPD  137 (212)
T ss_dssp             EEEECSCCTTTT-CEEEEEEEEET-TEEEEEEE---EEEEECGGGCCTTCCEEEECCCCEE-EETTSCEEEEEEEECSSC
T ss_pred             EEEEeccCCCCC-CeEEEEEEEcC-CCcEEEEE---EEEEeccCccCCCcceeecCCccee-EecCCCEEEEEEecCCCC
Confidence            69999994 999 99999999998 66666555   777764321  12255555555555 889999999999999999


Q ss_pred             CceEEEeCCcccccC---CceEE----ecceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEEecCcc
Q psy14542        252 PTIKWYKQDSPVEES---DRIQR----IGSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQYAHGKY  313 (371)
Q Consensus       252 ~~v~W~~~~~~~~~~---~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~p~  313 (371)
                      +.+.|++++..+...   .++..    ..+.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..++.
T Consensus       138 p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~~  207 (212)
T 2yd6_A          138 PEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKH  207 (212)
T ss_dssp             CEEEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred             CeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEeccc
Confidence            999999999987654   33332    13689999999999999999999999986 4557787776665

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.92  E-value=1.3e-23  Score=165.19  Aligned_cols=162  Identities=22%  Similarity=0.397  Sum_probs=129.5

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe-CCEEEeeC-----------CeeEEEEccCCcCCCeEEEEE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRN-----------SDEVLVLDRVQREDAGMYQCH   77 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~-~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~   77 (371)
                      ++++.+.|.. ..+.+|++++|.|.+....+.+.+.|++ ++..+...           ....|.|.+++.+|+|.|+|.
T Consensus         2 p~~v~~~p~~-~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (191)
T 1epf_A            2 VLQVDIVPSQ-GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCV   80 (191)
T ss_dssp             -CCEEEESSS-EEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             ceEEEecCCC-cEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEE
Confidence            5678888888 8999999999999665544578999999 88777632           457899999999999999999


Q ss_pred             EEcCC-CCeEEEEEEEEecceeeEecCC-ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCC
Q psy14542         78 VSADD-DSAQMSAQVILGGELVEIASSN-QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRED  155 (371)
Q Consensus        78 ~~~~~-~~~~~~~~l~v~~~~~~~~~~~-~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~  155 (371)
                      +.+.. +.....+.|.|. .++.+...+ ...+.+|+.+.|.|.+.+.|. +.+.|++++..+....             
T Consensus        81 ~~~~~~~~~~~~~~l~v~-~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-~~v~W~~~~~~~~~~~-------------  145 (191)
T 1epf_A           81 VTAEDGTQSEATVNVKIF-QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLP-PTIIWKHKGRDVILKK-------------  145 (191)
T ss_dssp             EEETTTEEEEEEEEEEEE-CCSEEEECCSSEECCTTSCEEECCEEECSSC-CEEEEEETTEEGGGGC-------------
T ss_pred             EEcCCCcceEEEEEEEee-cCceEecCCCcEeecCCCeEEEEEEECCCCC-CEEEEEECCEEeeccC-------------
Confidence            99887 445677888888 555555444 344589999999999998887 8899999998875432             


Q ss_pred             CeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        156 AGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       156 ~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                               +.++....+..|.|.++..+| .|.|+|.+.|.
T Consensus       146 ---------~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~  177 (191)
T 1epf_A          146 ---------DVRFIVLSNNYLQIRGIKKTD-EGTYRCEGRIL  177 (191)
T ss_dssp             ---------CTTEEECTTSCEEETTCCGGG-CEEEEEEEEEG
T ss_pred             ---------CceEEEecCCeEEECCCChhh-CEEEEEEEEEe
Confidence                     123444445689999999999 99999999998

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.92  E-value=2e-24  Score=181.30  Aligned_cols=209  Identities=16%  Similarity=0.193  Sum_probs=146.9

Q ss_pred             ceeeEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccc
Q psy14542         96 ELVEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG  174 (371)
Q Consensus        96 ~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~  174 (371)
                      ++|.+...+.. .+.+|+.++|.|.+.+     .+.|++++.......                          ......
T Consensus         3 p~p~i~~~~~~~~v~~G~~v~L~C~~~~-----~v~W~~~~~~~~~~~--------------------------~~~~~~   51 (289)
T 3ejj_X            3 PAPVIEPSGPELVVEPGETVTLRCVSNG-----SVEWDGPISPYWTLD--------------------------PESPGS   51 (289)
T ss_dssp             -CCEEESCSSEEEECTTCCEEEEEECSS-----CCEEECSCSSSSEEC--------------------------CCSSCC
T ss_pred             CCcEecCCCceEEECCCCCEEEEEEeCC-----cEEEccCCCceEEEe--------------------------ccCCcc
Confidence            34555555444 4489999999999876     489997654211100                          001126


Q ss_pred             eEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccc-eeeeeeeeeeeecCCeEEEEEEeecCCCCc
Q psy14542        175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAA-KMFEKHRILNVKKDESVILPCSAQGNPLPT  253 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~-~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~  253 (371)
                      .|.|.+++..| .|.|+|.+.+. .+......   .|.|.     .+|. +...+.... +..|+.+.|.|.+.+.+.+.
T Consensus        52 ~L~i~~~~~~d-~G~Y~C~~~~~-~~~~~~~~---~l~V~-----~~~~~~~~~~~~~~-v~~g~~v~L~C~~~~~~~~~  120 (289)
T 3ejj_X           52 TLTTRNATFKN-TGTYRCTELED-PMAGSTTI---HLYVK-----DPAHSWNLLAQEVT-VVEGQEAVLPCLITDPALKD  120 (289)
T ss_dssp             EEEESSCCGGG-CEEEEEECCC------CEEE---EEEEC-----CSSCSEEESCSEEE-EETTSCEEECEEESCGGGGG
T ss_pred             EEEEeeecccc-CEEEEEEEecc-CCcceeEE---EEEEe-----CCCcceecccceEE-EecCCceEeEEEccCCCcce
Confidence            89999999999 99999999987 55555555   67776     3333 344444455 89999999999999876665


Q ss_pred             -eEEEe-CCcccccCCceE-EecceEEEeccCCCCCeEEEEEEE-cCCCCceeEEEEEEec----CcccccccceEEEEe
Q psy14542        254 -IKWYK-QDSPVEESDRIQ-RIGSSLSISHVEESDSGVWNCVAN-NSEGQDKMQLFIQYAH----GKYHMLSSGELIIHQ  325 (371)
Q Consensus       254 -v~W~~-~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~-n~~g~~~~~~~l~v~~----~p~~~~~~~~~~~~~  325 (371)
                       +.|++ ++..+....++. ..++.|.|.++..+|+|.|+|.|. +..+.....+.|.|..    +|.         +. 
T Consensus       121 ~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~---------i~-  190 (289)
T 3ejj_X          121 SVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQ---------IK-  190 (289)
T ss_dssp             SEEEEEGGGEECCTTCCEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCE---------EE-
T ss_pred             EEEEEecCCeecCCCccEEECCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCe---------EE-
Confidence             99986 566666665555 345689999999999999999999 5566667778888874    444         33 


Q ss_pred             eeeccccccccccccccceeeeeecCCeEEEeeeeec-CCCCccccC
Q psy14542        326 VDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLPTIKYR  371 (371)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p~i~W~  371 (371)
                       ..|..              ..+.+|+.+.|.|.+.| .|+|.++|+
T Consensus       191 -~~~~~--------------~~~~~g~~~~l~C~~~~~~p~~~i~W~  222 (289)
T 3ejj_X          191 -LEPSK--------------LVRIRGEAAQIVCSATNAEVGFNVILK  222 (289)
T ss_dssp             -EESSS--------------EECCSSSCEEEEEEEEESSSCCEEEEE
T ss_pred             -ecCCc--------------eEEEeCCcEEEEEEeCCCCCceEEEEE
Confidence             22221              25578999999999999 788999995

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.92  E-value=5.6e-24  Score=180.68  Aligned_cols=227  Identities=13%  Similarity=0.204  Sum_probs=149.1

Q ss_pred             eeeecCCcEEEEEEecCCCCCc----eEEEeeCCEEeeeCCeeEEEEcc--cCcCCCeeEEEEEeCCceeEeccceEEEE
Q psy14542        106 VVVDVGHRIELHCRVSPKRLSS----AKAWLKDGLVLRRNSDEVLVLDR--VQREDAGMYQCHIEDGKYHMLSSGELIIH  179 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~~~----~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~g~y~~~~~~~~~~~~~~~~l~i~  179 (371)
                      .....|++++|.|.+.+.+.+.    .+.|+|++......    .....  ........+.... ........+.+|.|.
T Consensus        10 v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~----~~~~~~~~~~~~~~r~~~~~-~~~~~~~~~~sL~I~   84 (313)
T 4fqp_A           10 VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMA----VFHQTQGPSYSESKRLEFVA-ARLGAELRNASLRMF   84 (313)
T ss_dssp             ECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSE----EEETTTEEEESSTTTEEESS-CCTTSCCCBCCEEEC
T ss_pred             EEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceE----EEecCCCceeccCcceEEEe-eccCCcccceEEEEC
Confidence            3347899999999998765522    58999987532110    00000  0000000000000 000011123579999


Q ss_pred             EeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEee-cCCCCceEEEe
Q psy14542        180 QVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQ-GNPLPTIKWYK  258 (371)
Q Consensus       180 ~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~  258 (371)
                      +++.+| +|.|+|.+.+...+......   .|.+.     .+|.+........ +..++.+.+.|.+. +.|.+.+.|++
T Consensus        85 ~v~~~D-~G~Y~C~v~~~~~~~~~~~~---~l~v~-----~~P~~~~~~~~~~-~~~~~~~~~~C~~~~~~P~~~i~W~~  154 (313)
T 4fqp_A           85 GLRVED-EGNYTCLFVTFPQGSRSVDI---WLRVL-----AKPQNTAEVQKVQ-LTGEPVPMARCVSTGGRPPAQITWHS  154 (313)
T ss_dssp             SCCGGG-CEEEEEEEECSSSCEEEEEE---EECCB-----BCCEEEEEECCBC-CCSSCEEEEEEEEEEEBSCCEEEEEE
T ss_pred             cCChhh-CEEEEEEEeeccCcceeeee---eeeec-----cCCcceecccceE-eecCceEEEEEEccCccCCcEEEeec
Confidence            999999 99999988654245555544   66666     5666666655555 77888899999865 68999999999


Q ss_pred             CCcccccCCceE-------EecceEEEeccCCCCCeEEEEEEEcCCCCc--eeEEEEEEecCcccccccceEEEEeeeec
Q psy14542        259 QDSPVEESDRIQ-------RIGSSLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQYAHGKYHMLSSGELIIHQVDEK  329 (371)
Q Consensus       259 ~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~~~  329 (371)
                      ++..+.......       ...+.|.|.....+|+|.|+|.|.|..+..  ..++.|.|..+|.         +. +..+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~---------v~-~~~~  224 (313)
T 4fqp_A          155 DLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPE---------VS-ISGY  224 (313)
T ss_dssp             TTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEE---------EE-EECC
T ss_pred             CCccccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCc---------cc-cccc
Confidence            998765443322       112358899999999999999999987765  4455666777777         44 1211


Q ss_pred             cccccccccccccceeeeeecCCeEEEeeeeecCCCC-ccccC
Q psy14542        330 NKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP-TIKYR  371 (371)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~  371 (371)
                      ..              ..+.+|+.++|.|.+.|+|+| .|+|+
T Consensus       225 ~~--------------~~~~~g~~v~l~C~~~g~P~p~~v~W~  253 (313)
T 4fqp_A          225 DN--------------NWYLGQNEATLTCDARSNPEPTGYNWS  253 (313)
T ss_dssp             CS--------------CEETTCCCEEEEEEEEEESCCCEEEEE
T ss_pred             cc--------------eeecCCCeEEEEEEecCCCCCcEEEEE
Confidence            11              145678999999999999999 69995

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.92  E-value=5.1e-24  Score=167.12  Aligned_cols=174  Identities=25%  Similarity=0.481  Sum_probs=130.6

Q ss_pred             CceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeec
Q psy14542        104 NQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDE  183 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~  183 (371)
                      ....+.+|+.++|.|.+.+.+. +.+.|++++..+....                      +.++....+..|.|.+++.
T Consensus        10 ~~~~v~~G~~v~l~C~~~~~p~-~~v~W~~~~~~~~~~~----------------------~~~~~~~~~~~L~i~~~~~   66 (189)
T 2v5t_A           10 SPQEFKQGEDAEVVCRVSSSPA-PAVSWLYHNEEVTTIS----------------------DNRFAMLANNNLQILNINK   66 (189)
T ss_dssp             SSEEEETTSCEEECCEEECSSC-CEEEEEC-----CBCC----------------------CTTEEECTTSCEEETTCCG
T ss_pred             CCEEEeCCCcEEEEEEEcCCCC-CEEEEEECCccceecc----------------------CCeEEEecCCCEEEeeCCH
Confidence            3445589999999999988776 8999999987765432                      2344445557899999999


Q ss_pred             CCccceeEEEeeccccceee-eeeccceeeeecchhccccceeeeee--eeeeeecCCeEEEEEEeecCCCCceEEEeCC
Q psy14542        184 SDRYRSYQCRGVNKLTGASL-LSVNRGRLSLTENKRLLSAAKMFEKH--RILNVKKDESVILPCSAQGNPLPTIKWYKQD  260 (371)
Q Consensus       184 ~d~~g~y~C~~~~~~~~~~~-~~~~~~~l~v~~~~~~~~p~~~~~~~--~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~  260 (371)
                      +| .|.|+|.+.+...+... ...   .+.+.     .+|.+.....  ... +..|+.+.|.|.+.+.|.+.+.|++++
T Consensus        67 ~d-~G~Y~C~~~~~~~~~~~~~~~---~l~v~-----~~p~~~~~~~~~~~~-~~~g~~v~l~C~~~g~p~~~v~W~~~g  136 (189)
T 2v5t_A           67 SD-EGIYRCEGRVEARGEIDFRDI---IVIVN-----VPPAISMPQKSFNAT-AERGEEMTFSCRASGSPEPAISWFRNG  136 (189)
T ss_dssp             GG-CEEEEEEEEETTTTEEEEEEE---EEEEE-----EEEEEECSCCEEEEE-TTSCCCEEEECEEEEESCCEEEEEETT
T ss_pred             hH-CcEEEEEEEEcCCCceEEEEE---EEEec-----CCCCccccccccccc-ccCCCcEEEEEEEccCCCCeEEEEECC
Confidence            99 99999999987323221 222   55555     4455443332  233 788999999999999999999999999


Q ss_pred             cccccCCceEEe--cceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEec
Q psy14542        261 SPVEESDRIQRI--GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAH  310 (371)
Q Consensus       261 ~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  310 (371)
                      ..+....++...  ++.|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus       137 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~v  188 (189)
T 2v5t_A          137 KLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV  188 (189)
T ss_dssp             EECCCSSSEEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EECcCCCcEEEecCCCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEEe
Confidence            988877666533  46899999999999999999999999998888888753

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.92  E-value=2.3e-23  Score=166.46  Aligned_cols=179  Identities=22%  Similarity=0.365  Sum_probs=135.1

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccC-CcCCCeEEEE
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRV-QREDAGMYQC   76 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~-~~~d~G~Y~C   76 (371)
                      ..+|.+...|.. ..+.+|+.+.|.|.+. +.|.+.+.|++++..+...          ....|.|.++ +.+|+|.|+|
T Consensus         4 ~~~P~~~~~p~~-~~v~~G~~v~L~C~~~-g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C   81 (212)
T 2yd6_A            4 ETPPRFTRTPVD-QTGVSGGVASFICQAT-GDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYEC   81 (212)
T ss_dssp             CEEEEEEECCCC-EEEETTSCEEEEEEEE-EESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEE
T ss_pred             CCCCeEEeCcce-eEEecCCeEEEEEEEe-eCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEE
Confidence            456888888888 8999999999999654 6778899999999887653          3467999999 5999999999


Q ss_pred             EEEcCCCCeEEEEEEEEecc------eeeEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEc
Q psy14542         77 HVSADDDSAQMSAQVILGGE------LVEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLD  149 (371)
Q Consensus        77 ~~~~~~~~~~~~~~l~v~~~------~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~  149 (371)
                      .+.+..+.....+.|.|...      .|.+...+.. .+..|+.+.|.|.+.+.|. +.+.|++++..+......     
T Consensus        82 ~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~-p~v~W~~~g~~l~~~~~~-----  155 (212)
T 2yd6_A           82 VASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPD-PEITWFKDFLPVDTSNNN-----  155 (212)
T ss_dssp             EEEETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSC-CEEEEEETTEEC-----------
T ss_pred             EEEcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCC-CeEEEEECCccccCcCCC-----
Confidence            99998888778888888732      1445544443 4488999999999998887 899999999887654210     


Q ss_pred             ccCcCCCeeEEEEEeCCceeEe---ccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542        150 RVQREDAGMYQCHIEDGKYHML---SSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT  214 (371)
Q Consensus       150 ~~~~~~~g~y~~~~~~~~~~~~---~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~  214 (371)
                                      .++...   ....|.|.++..+| .|.|+|.|.|. .|....+.  +.+.|.
T Consensus       156 ----------------~~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~N~-~G~~~s~~--a~l~~~  203 (212)
T 2yd6_A          156 ----------------GRIKQLRSESIGALQIEQSEESD-QGKYECVATNS-AGTRYSAP--ANLYVR  203 (212)
T ss_dssp             ----------------CCEEEEEETTEEEEEECSCCGGG-CEEEEEEEEET-TEEEECCC--EEEEEE
T ss_pred             ----------------ceEEEEecCCeEEEEEcCCCccc-CEEEEEEEECC-CCcccccc--ccEEEE
Confidence                            011111   12689999999999 99999999999 66544332  155555

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.92  E-value=1.9e-23  Score=165.05  Aligned_cols=176  Identities=18%  Similarity=0.238  Sum_probs=136.6

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEEE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQCH   77 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~   77 (371)
                      .+|.+...|.. ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+...           ....|.|.+++.+|+|.|+|.
T Consensus         3 ~~P~~~~~~~~-~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (197)
T 2j8h_A            3 MAPHFKEELRN-LNVRYQSNATLVCKV-TGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR   80 (197)
T ss_dssp             CCCEEEECCCC-EEEETTSCEEEEEEE-ECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEE
T ss_pred             CCCEEEEcCCc-cEEcCCCEEEEEEEE-eecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEE
Confidence            46788888877 999999999999965 46778899999999877643           223899999999999999999


Q ss_pred             EEcCCCCeEEEEEEEEecceeeEecCC------ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEccc
Q psy14542         78 VSADDDSAQMSAQVILGGELVEIASSN------QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRV  151 (371)
Q Consensus        78 ~~~~~~~~~~~~~l~v~~~~~~~~~~~------~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~  151 (371)
                      +.+..+.....+.|.|. .++.+....      ...+.+|+.+.|.|.+.+.|. +.+.|++++..+.....+.+...  
T Consensus        81 ~~n~~g~~~~~~~l~V~-~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~i~W~~~~~~~~~~~~~~~~~~--  156 (197)
T 2j8h_A           81 ATNQGGSVSGTASLEVE-VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPD-PVITWQKGQDLIDNNGHYQVIVT--  156 (197)
T ss_dssp             EEETTEEEEEEEEEEEE-EEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESC-CEEEEEESSCEECSSSSCEEEEC--
T ss_pred             EEECCCceeEEEEEEEc-CCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCC-CcEEEEECCEEeecCCCEEEEEc--
Confidence            99988877888888887 455443322      223478999999999998887 89999999988765433221110  


Q ss_pred             CcCCCeeEEEEEeCCceeEeccceEEEEE-eecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542        152 QREDAGMYQCHIEDGKYHMLSSGELIIHQ-VDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT  214 (371)
Q Consensus       152 ~~~~~g~y~~~~~~~~~~~~~~~~l~i~~-~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~  214 (371)
                                         .....|.|.+ +..+| .|.|+|.+.|. .|......   .|.|.
T Consensus       157 -------------------~~~~~L~i~~~~~~~d-~G~Y~C~a~N~-~g~~~~~~---~l~V~  196 (197)
T 2j8h_A          157 -------------------RSFTSLVFPNGVERKD-AGFYVVCAKNR-FGIDQKTV---ELDVA  196 (197)
T ss_dssp             -------------------SSEEEEECTTCCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEE
T ss_pred             -------------------CCceEEEEeCCCCccc-CEeEEEEEEeC-CCcEeEEE---EEEEe
Confidence                               0125788999 99999 99999999999 77766655   66554

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.92  E-value=1.2e-23  Score=166.75  Aligned_cols=168  Identities=16%  Similarity=0.258  Sum_probs=128.9

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCC-eeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCeE
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSS-AKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQ   86 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   86 (371)
                      .++|.+.+.|.. ..+.+|++++|.|.+. +.+.+ .+.|+|++..+.. ....|.|.+++.+|+|.|+|.+.+.  ...
T Consensus         5 ~p~p~i~~~p~~-~~v~~G~~v~L~C~~~-~~p~~~~v~W~k~g~~l~~-~~~~L~i~~v~~~D~G~Y~C~a~n~--~~s   79 (204)
T 3sgj_C            5 LPKAVVFLEPQW-YRVLEKDSVTLKCQGA-YSPEDQSTQWFHNESLISS-QASSYFIDAATVDDSGEYRCQTQLS--TLS   79 (204)
T ss_dssp             -CBCEEEEESCC-SEEETTCCEEEEEECC-SSSSCCCEEEEETTEEESC-CSSEEEESSCCGGGCEEEEEEETTS--BCC
T ss_pred             CCCCeEEEcCCC-eEEECCCCEEEEEcCC-CCCCCcEEEEEECCEEccc-CccEEEEecccccCCEEEEEEeCCC--ccc
Confidence            567889999997 7899999999999654 44444 4999999998876 4589999999999999999999874  334


Q ss_pred             EEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCC
Q psy14542         87 MSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDG  166 (371)
Q Consensus        87 ~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~  166 (371)
                      ..+.|.|. .++.+...+...+.+|+.++|.|.+.+.++.+.+.|++++..+....                        
T Consensus        80 ~~~~l~V~-~~p~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~------------------------  134 (204)
T 3sgj_C           80 DPVQLEVH-IGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFH------------------------  134 (204)
T ss_dssp             CCEEEEEE-CSSEEEECSCSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEE------------------------
T ss_pred             ccEEEEEe-cCceEecCCceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeeccc------------------------
Confidence            55677777 44455555556668999999999996654448999999998764321                        


Q ss_pred             ceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542        167 KYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT  214 (371)
Q Consensus       167 ~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~  214 (371)
                           .+..|.|.++..+| .|.|+|.+.|...+......   .|.|.
T Consensus       135 -----~~~~L~i~~v~~~D-~G~Y~C~a~n~~~~~~s~~~---~l~V~  173 (204)
T 3sgj_C          135 -----HNSDFYIPKATLKD-SGSYFCRGLVGSKNVSSETV---QITIT  173 (204)
T ss_dssp             -----ECCCEEESSCCGGG-CEEEEEEEEETTEEEECCCE---EEEEE
T ss_pred             -----CCceEEECcCCccc-CEEEEEEEEeCCCceecCcE---EEEEe
Confidence                 12679999999999 99999999995233433333   56665

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.92  E-value=1.6e-23  Score=162.01  Aligned_cols=154  Identities=16%  Similarity=0.240  Sum_probs=122.5

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCC-eeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCeE
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSS-AKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQ   86 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   86 (371)
                      .++|.+.+.|.. ..+.+|++++|.|.+. +.+.+ .+.|++++..+.. ....|.|.+++.+|+|.|+|.+.+..+  .
T Consensus         5 ~~~p~i~~~p~~-~~v~~G~~v~L~C~~~-~~p~~~~~~W~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~n~~~--s   79 (175)
T 1fnl_A            5 LPKAVVFLEPQW-YSVLEKDSVTLKCQGA-YSPEDNSTQWFHNESLISS-QASSYFIDAATVNDSGEYRCQTNLSTL--S   79 (175)
T ss_dssp             CCCCEEEEESCC-SEEETTCCEEEEEECC-CBTTBCCCEEEETTEEEES-SCSEEEESSCCGGGCEEEEEECSSSCC--C
T ss_pred             CCCCEEEEcCCc-eeeeCCCcEEEEeeCC-CCCCCcceEEEECCEEccC-CceEEEEeCCCcccCEEEEEEeeCCcc--c
Confidence            467889999987 8899999999999654 44444 4899999998875 677999999999999999999987544  4


Q ss_pred             EEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCC
Q psy14542         87 MSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDG  166 (371)
Q Consensus        87 ~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~  166 (371)
                      ..+.|.|.. ++.....+...+.+|+.+.|.|.+.+.++.+.+.|++++..+....                        
T Consensus        80 ~~~~l~V~~-~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~~------------------------  134 (175)
T 1fnl_A           80 DPVQLEVHI-GWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH------------------------  134 (175)
T ss_dssp             CCEEEEEEC-SSEEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEE------------------------
T ss_pred             ccEEEEEeC-CCceeeCCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCCC------------------------
Confidence            456666663 3333444455568999999999998876646999999998774321                        


Q ss_pred             ceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        167 KYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       167 ~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                           .+..|.|.+++.+| .|.|+|.+.|.
T Consensus       135 -----~~~~L~i~~v~~~d-~G~Y~C~a~n~  159 (175)
T 1fnl_A          135 -----HNSDFHIPKATLKD-SGSYFCRGLVG  159 (175)
T ss_dssp             -----ECCCEEESSCCGGG-CEEEEEEEEET
T ss_pred             -----CCCEEEEcccChhh-CeEEEEEEEcC
Confidence                 12679999999999 99999999996

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.92  E-value=4e-23  Score=165.11  Aligned_cols=175  Identities=20%  Similarity=0.334  Sum_probs=137.6

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCc-CCCeEEE
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQR-EDAGMYQ   75 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~-~d~G~Y~   75 (371)
                      ..+|.+...|.. ..+.+|++++|.|.+ .+.|.+.+.|++++..+...           ....|.|.+++. +|+|.|+
T Consensus         4 ~~pP~~~~~p~~-~~v~~G~~v~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~   81 (212)
T 2yd1_A            4 AHPPEIIRKPQN-QGVRVGGVASFYCAA-RGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYE   81 (212)
T ss_dssp             -CCCEEEECCCC-EEEETTSCEEEEEEE-ECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEE
T ss_pred             CCCCEEEcCCCc-eEEecCCEEEEEEEE-ccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEE
Confidence            357888888888 899999999999965 46778899999999887522           236899999999 9999999


Q ss_pred             EEEEcCCCC-eEEEEEEEEecce------eeEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEE
Q psy14542         76 CHVSADDDS-AQMSAQVILGGEL------VEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLV  147 (371)
Q Consensus        76 C~~~~~~~~-~~~~~~l~v~~~~------~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~  147 (371)
                      |.+.+..+. ....+.|.|...+      |.+...+.. .+..|+.+.|.|.+.+.+. +.+.|++++..+.....    
T Consensus        82 C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~-p~i~W~~~~~~~~~~~~----  156 (212)
T 2yd1_A           82 CVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPT-PNIYWIKNQTKVDMSNP----  156 (212)
T ss_dssp             EEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSC-CEEEEEETTEECCTTST----
T ss_pred             EEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCC-CeEEEEECCeEcccCCC----
Confidence            999998888 6778888887321      455544433 4478999999999998887 89999999988765321    


Q ss_pred             EcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeee-eccceeeee
Q psy14542        148 LDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLS-VNRGRLSLT  214 (371)
Q Consensus       148 ~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~-~~~~~l~v~  214 (371)
                                         ++. ..++.|.|.++..+| .|.|+|.+.|. .|..... +   .|.|.
T Consensus       157 -------------------~~~-~~~~~L~i~~v~~~d-~G~Y~C~a~N~-~G~~~s~~~---~l~V~  199 (212)
T 2yd1_A          157 -------------------RYS-LKDGFLQIENSREED-QGKYECVAENS-MGTEHSKAT---NLYVK  199 (212)
T ss_dssp             -------------------TEE-EETTEEEECSCCGGG-CEEEEEEEEET-TEEEECCCE---EEEEE
T ss_pred             -------------------eEE-ccCCeEEEccCChhh-CEEEEEEeecC-CCceeEEEE---EEEEE
Confidence                               111 223689999999999 99999999998 6665433 4   67776

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.92  E-value=4.1e-24  Score=183.02  Aligned_cols=225  Identities=16%  Similarity=0.240  Sum_probs=148.8

Q ss_pred             eeeecCCcEEEEEEecCCC---CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe----ccceEEE
Q psy14542        106 VVVDVGHRIELHCRVSPKR---LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML----SSGELII  178 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~----~~~~l~i  178 (371)
                      ..+.+|++++|.|.+.+.+   ....+.|++++.....    .+.....   ..+........+++.+.    .+..|.|
T Consensus        24 ~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~----~i~~~~~---~~~~~~~~~~~~r~~~~~~~~~~~~L~I   96 (331)
T 3u83_A           24 MYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQ----NVAIYNP---SMGVSVLAPYRERVEFLRPSFTDGTIRL   96 (331)
T ss_dssp             EEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEE----EEEEEET---TTEEEECTTCTTTEEESSCSSSBCCEEE
T ss_pred             EEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCc----eEEEEec---cCCCCcCcccCCceEecccCCCCceEEE
Confidence            3458999999999998762   2268999994321110    0000000   00000000001233322    3467999


Q ss_pred             EEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceee--eeeeeeeeecC---CeEEEEEE-eecCCCC
Q psy14542        179 HQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF--EKHRILNVKKD---ESVILPCS-AQGNPLP  252 (371)
Q Consensus       179 ~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~--~~~~~~~~~~g---~~~~l~C~-~~~~p~~  252 (371)
                      .+++.+| +|.|+|.+.+...+......   .|.|.     .+|.+..  ...... +..|   +.+.|.|. +.+.|.+
T Consensus        97 ~~v~~~D-~G~Y~C~~~~~~~~~~~~~~---~l~V~-----~~p~~~~~~~~~~~~-~~~g~~~~~~~l~C~~~~~~p~~  166 (331)
T 3u83_A           97 SRLELED-EGVYICEFATFPTGNRESQL---NLTVM-----AKPTNWIEGTQAVLR-AKKGQDDKVLVATCTSANGKPPS  166 (331)
T ss_dssp             CSCCGGG-CEEEEEEEEEETTEEEEEEE---EEEEE-----BCCEEEEEECSSCEE-ECTTCCCCEEEEEEEEEEEBSCC
T ss_pred             cccCccc-CcEEEEEEEecCCCccEEEE---EEEEe-----cCCcceeecCCCcee-ecCCCccceEEEEEEecCCcCCc
Confidence            9999999 99999985543255555555   77777     4555432  233333 7777   77999998 7889999


Q ss_pred             ceEEEeCCcccccC------CceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcccccccceEEEEee
Q psy14542        253 TIKWYKQDSPVEES------DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQV  326 (371)
Q Consensus       253 ~v~W~~~~~~~~~~------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~  326 (371)
                      .+.|++++......      .......+.|.|..+..+|+|.|+|.|.|..|....++.|.|..+|.         +. +
T Consensus       167 ~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~---------~~-~  236 (331)
T 3u83_A          167 VVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPE---------VT-I  236 (331)
T ss_dssp             EEEEEESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEE---------EE-E
T ss_pred             eEEEEcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCe---------EE-E
Confidence            99999964322111      11112234688888899999999999999999988999999988887         54 1


Q ss_pred             eeccccccccccccccceeeeeecCCeEEEeeeeecCCCCc-cccC
Q psy14542        327 DEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT-IKYR  371 (371)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-i~W~  371 (371)
                      ..+..              ..+.+|+.+.|.|.+.|+|+|. ++|+
T Consensus       237 ~~~~~--------------~~~~~g~~~~l~C~~~g~p~p~~i~W~  268 (331)
T 3u83_A          237 EGFDG--------------NWYLQRMDVKLTCKADANPPATEYHWT  268 (331)
T ss_dssp             ECCCS--------------CCBTTCCCEEEEEEEEEESCCCEEEEE
T ss_pred             ecCCC--------------ceEeCCCeEEEEEeCcCCCCCCEEEEE
Confidence            21111              1467899999999999999998 9995

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.91  E-value=4.4e-23  Score=162.88  Aligned_cols=177  Identities=16%  Similarity=0.307  Sum_probs=137.5

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEE
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHV   78 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~   78 (371)
                      ..+|.+...|.. +.+.+|+++.|.|.+ .+.|.+.+.|++++..+...         ...+|.|.+++.+|+|.|+|.+
T Consensus         5 ~~~P~~~~~~~~-~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   82 (197)
T 3lcy_A            5 GEAPGIRKEMKD-VTTKLGEAAQLSCQI-VGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIA   82 (197)
T ss_dssp             CEEEEEEECCCC-EEEETTSEEEEEEEE-EEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEE
T ss_pred             CCCCcccccCCc-eEEeCCCcEEEEEEE-ecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEE
Confidence            457788888887 999999999999965 45778899999999888654         3348999999999999999999


Q ss_pred             EcCCCCeEEEEEEEEecceeeEecC----CceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcC
Q psy14542         79 SADDDSAQMSAQVILGGELVEIASS----NQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE  154 (371)
Q Consensus        79 ~~~~~~~~~~~~l~v~~~~~~~~~~----~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  154 (371)
                      .+..+.....+.|.|. .+|.+...    ....+..|+.+.|.|.+.+.|. +.+.|++++..+.......+...     
T Consensus        83 ~n~~~~~~~~~~l~v~-~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-p~v~W~~~~~~~~~~~~~~~~~~-----  155 (197)
T 3lcy_A           83 TNEVGEVETSSKLLLQ-ATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPV-PAMTWFHGQKLLQNSENITIENT-----  155 (197)
T ss_dssp             ECSSCEEEEEEEEEEE-EEEEECTTSCCCSEEEEETTSCEEEEEEEEEESC-CEEEEEETTEECCCCSSEEEEEC-----
T ss_pred             ECCCCceeEEEEEEEE-cCCCCCCCccCCcceeecCCCeEEEEEEEeeeeC-CeeEEeECCEECCCCCceEEEEc-----
Confidence            9988887888888887 44444332    2233478999999999998887 89999999998865543221110     


Q ss_pred             CCeeEEEEEeCCceeEeccceEEEEEeec-CCccceeEEEeeccccceeeeeeccceeeee
Q psy14542        155 DAGMYQCHIEDGKYHMLSSGELIIHQVDE-SDRYRSYQCRGVNKLTGASLLSVNRGRLSLT  214 (371)
Q Consensus       155 ~~g~y~~~~~~~~~~~~~~~~l~i~~~~~-~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~  214 (371)
                                .      ....|.|.++.. +| .|.|+|.+.|. .|......   .|.|.
T Consensus       156 ----------~------~~~~L~i~~~~~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V~  195 (197)
T 3lcy_A          156 ----------E------HYTHLVMKNVQRKTH-AGKYKVQLSNV-FGTVDAIL---DVEIQ  195 (197)
T ss_dssp             ----------S------SEEEEEESSCCHHHH-CEEEEEEEECS-SCEEEEEE---EEEEE
T ss_pred             ----------C------CEEEEEEccccchhh-CceEEEEEEcC-cCceEEEE---EEEEe
Confidence                      0      115789999985 78 99999999999 77776666   66665

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.91  E-value=2.1e-23  Score=170.20  Aligned_cols=180  Identities=20%  Similarity=0.293  Sum_probs=132.7

Q ss_pred             eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCC
Q psy14542        106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESD  185 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d  185 (371)
                      ..+.+|+.+.|.|.+.+.+. +.+.|++++..+......                    ...........|.|.+++..|
T Consensus        25 ~~v~~G~~v~L~C~~~~~p~-~~v~W~~~~~~~~~~~~~--------------------~~~~~~~~~~~L~i~~v~~~d   83 (241)
T 3grw_A           25 LAVPAANTVRFRCPAAGNPT-PSISWLKNGREFRGEHRI--------------------GGIKLRHQQWSLVMESVVPSD   83 (241)
T ss_dssp             EEEETTSEEEEECCEECSSC-CEEEEEETTEECCGGGST--------------------TCCEEEGGGTEEEECSCCGGG
T ss_pred             eEEcCCCeEEEEEEecCCCC-ceeEEEECCcccCCCCcc--------------------cceeeeccceEEEEEeCCccc
Confidence            44589999999999998877 899999999887654211                    001111233679999999999


Q ss_pred             ccceeEEEeeccccceeeeeeccceeeeecchhccccceee-eeeeeeeeecCCeEEEEEEeecCCCCceEEEe----CC
Q psy14542        186 RYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF-EKHRILNVKKDESVILPCSAQGNPLPTIKWYK----QD  260 (371)
Q Consensus       186 ~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~----~~  260 (371)
                       .|.|+|.+.+. .+......   .+.|..... .+|.+.. .+.... +..|+.+.|.|.+.+.|.+.+.|++    ++
T Consensus        84 -~G~Y~C~~~~~-~~~~~~~~---~l~V~~~~~-~~~~~~~~~~~~~~-~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g  156 (241)
T 3grw_A           84 -RGNYTCVVENK-FGSIRQTY---TLDVLERSP-HRPILQAGLPANQT-AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNG  156 (241)
T ss_dssp             -CEEEEEEEEET-TEEEEEEE---EEEEECCCC-CCCEEEECTTCSEE-CCTTCCEEEEEEEECSSCCEEEEEEECCSSS
T ss_pred             -CEEEEEEEeec-CCceEEEE---EEEEeccCC-CCceeecCCCccce-ecCCCEEEEEEEEecCCCCEEEEEEcccCCC
Confidence             99999999998 66666555   777764322 1222222 233444 8899999999999999999999999    78


Q ss_pred             cccccCCceE------------EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542        261 SPVEESDRIQ------------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       261 ~~~~~~~~~~------------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      ..+.......            ...+.|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~  221 (241)
T 3grw_A          157 SKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRA  221 (241)
T ss_dssp             CSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC-----
T ss_pred             cccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCC
Confidence            7775543321            1345799999999999999999999999999999999998877

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.91  E-value=2.5e-23  Score=163.44  Aligned_cols=175  Identities=19%  Similarity=0.223  Sum_probs=131.3

Q ss_pred             ceeeecCCcEEEEEEecCCCCCceEEEee-CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeec
Q psy14542        105 QVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDE  183 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~  183 (371)
                      ...+.+|+.++|.|.+.+.++.+.+.|++ ++..+............                   ......|.|.+++.
T Consensus        11 ~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~-------------------~~~~~~L~i~~~~~   71 (191)
T 1epf_A           11 QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWN-------------------DDDSSTLTIYNANI   71 (191)
T ss_dssp             SEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEE-------------------ETTEEEEEECSCCG
T ss_pred             CcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEEC-------------------CCCceEEEEccCCc
Confidence            34458999999999999876348999999 88776643211110000                   01226899999999


Q ss_pred             CCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCccc
Q psy14542        184 SDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPV  263 (371)
Q Consensus       184 ~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~  263 (371)
                      +| +|.|+|.+.+...+......   .+.|.     .+|.+...+.... +..|+.+.|.|.+.+.|.+.+.|++++..+
T Consensus        72 ~d-~G~Y~C~~~~~~~~~~~~~~---~l~v~-----~~p~~~~~~~~~~-~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~  141 (191)
T 1epf_A           72 DD-AGIYKCVVTAEDGTQSEATV---NVKIF-----QKLMFKNAPTPQE-FKEGEDAVIVCDVVSSLPPTIIWKHKGRDV  141 (191)
T ss_dssp             GG-CEEEEEEEEETTTEEEEEEE---EEEEE-----CCSEEEECCSSEE-CCTTSCEEECCEEECSSCCEEEEEETTEEG
T ss_pred             cc-CEEEEEEEEcCCCcceEEEE---EEEee-----cCceEecCCCcEe-ecCCCeEEEEEEECCCCCCEEEEEECCEEe
Confidence            99 99999999998324444444   66666     6677766666666 899999999999999999999999999877


Q ss_pred             ccC--CceE-EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        264 EES--DRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       264 ~~~--~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      ...  .++. ..++.|.|.++..+|+|.|+|.|.|..+.......+.|
T Consensus       142 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          142 ILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             GGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             eccCCceEEEecCCeEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence            543  2333 34568999999999999999999999977655555554

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.91  E-value=1.2e-23  Score=165.35  Aligned_cols=174  Identities=21%  Similarity=0.351  Sum_probs=134.7

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEEE
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHVS   79 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~   79 (371)
                      ..+|.+...+.. ..+.+|++++|.|.+ .+.|.+.+.|++++..+...        ....|.|.+++.+|+|.|+|.+.
T Consensus         5 ~~~P~i~~~~~~-~~~~~G~~v~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (192)
T 2iep_A            5 PKAPVITTPLET-VDALVEEVATFMCAV-ESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTAN   82 (192)
T ss_dssp             CEEEEESSCCCE-EEEETTSCEEEECCE-EEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCceeecCccc-eeeeCCCcEEEEeeC-CCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEE
Confidence            455667766666 889999999999954 55677899999999887542        34579999999999999999999


Q ss_pred             cCCCC-eEEEEEEEEecceeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCe
Q psy14542         80 ADDDS-AQMSAQVILGGELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAG  157 (371)
Q Consensus        80 ~~~~~-~~~~~~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g  157 (371)
                      +..+. ....+.|.|. .+|.+...+. ..+..|+.+.|.|.+.+.+. +.+.|++++..+....               
T Consensus        83 ~~~~~~~~~~~~l~v~-~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-~~v~W~~~~~~~~~~~---------------  145 (192)
T 2iep_A           83 NGVGGAVESCGALQVK-MKPKITRPPINVKIIEGLKAVLPCTTMGNPK-PSVSWIKGDSALRENS---------------  145 (192)
T ss_dssp             CSSSCCEEEEEEEEEE-EEEEEEECCCCEEEETTSCEEECCEEEEESC-CEEEEEETTEECCCCS---------------
T ss_pred             cCCCceeEeEEEEEEE-eCCccccCCcceEEeCCCcEEEEEEEeccCC-ceEEEEeCCEEccCCC---------------
Confidence            88776 4566778777 5555555443 34589999999999988877 7999999998876543               


Q ss_pred             eEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecccccee-eeeeccceeeee
Q psy14542        158 MYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS-LLSVNRGRLSLT  214 (371)
Q Consensus       158 ~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~  214 (371)
                               ++....++.|.|.++..+| .|.|+|.+.|. .|.. ....   .|.|.
T Consensus       146 ---------~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~~s~~~---~l~V~  189 (192)
T 2iep_A          146 ---------RIAVLESGSLRIHNVQKED-AGQYRCVAKNS-LGTAYSKLV---KLEVE  189 (192)
T ss_dssp             ---------SEEECTTSCEEESSCCGGG-CEEEEEEEEET-TEEEECCCE---EEEEE
T ss_pred             ---------cEEEecCCcEEEecCChhh-CEEEEEEEEcC-CCcEEEEEE---EEEEE
Confidence                     2233334689999999999 99999999998 6654 3334   66665

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.91  E-value=1.3e-23  Score=162.69  Aligned_cols=169  Identities=17%  Similarity=0.246  Sum_probs=124.9

Q ss_pred             ecccceEEEeCCCcEEEeccCcEEEEEEecCCCCC-CeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542          7 VKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSA   85 (371)
Q Consensus         7 v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   85 (371)
                      |.++|.+.+.|.. ..+.+|++++|.|.+ .+.+. ..+.|++++..+.. ...+|.|.+++.+|+|.|+|.+.+..+. 
T Consensus         1 v~~~P~i~~~p~~-~~v~~G~~v~L~C~~-~~~~~~~~i~W~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~~~~~s-   76 (176)
T 1f2q_A            1 VPQKPKVSLNPPW-NRIFKGENVTLTCNG-NNFFEVSSTKWFHNGSLSEE-TNSSLNIVNAKFEDSGEYKCQHQQVNES-   76 (176)
T ss_dssp             ---CCCCEEESSC-SEEETTCCEEEECCT-TCC----CCEEEETTEECSC-CSSEEEECSCCGGGCEEEEEECTTSSCC-
T ss_pred             CCCCCEEEcCCCC-cceecCCcEEEEEeC-CCCCCcceEEEEECCeECCC-CceEEEEeccceecCEEEEEEcCCcccc-
Confidence            3568889999998 889999999999954 44444 46999999998875 6789999999999999999999875543 


Q ss_pred             EEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeC
Q psy14542         86 QMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED  165 (371)
Q Consensus        86 ~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~  165 (371)
                       ..+.|.|. .++.+...+...+.+|+.+.|.|.+.+.++.+.+.|++++..+....                       
T Consensus        77 -~~~~l~V~-~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~-----------------------  131 (176)
T 1f2q_A           77 -EPVYLEVF-SDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY-----------------------  131 (176)
T ss_dssp             -CCEEEEEE-CSSEEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC-----------------------
T ss_pred             -ccEEEEEe-CcceeecCCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec-----------------------
Confidence             44566666 34444444455668999999999995444337999999998774321                       


Q ss_pred             CceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542        166 GKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT  214 (371)
Q Consensus       166 ~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~  214 (371)
                            .+..|.|.+++.+| .|.|+|.+.|...+......   .|.|.
T Consensus       132 ------~~~~L~i~~v~~~d-~G~Y~C~a~n~~~~~~s~~~---~l~V~  170 (176)
T 1f2q_A          132 ------ENHNISITNATVED-SGTYYCTGKVWQLDYESEPL---NITVI  170 (176)
T ss_dssp             ------CSSEEEESSCCGGG-CEEEEEEEEETTEEEECCCE---EEEEE
T ss_pred             ------CCCeEEECCCCccc-CEEEEEEEEeCCcceEecCE---EEEEe
Confidence                  12689999999999 99999999986233333333   66666

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.91  E-value=4.8e-23  Score=160.55  Aligned_cols=175  Identities=22%  Similarity=0.359  Sum_probs=131.5

Q ss_pred             eEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEE
Q psy14542         99 EIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELI  177 (371)
Q Consensus        99 ~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~  177 (371)
                      .+...+.. .+.+|+.++|.|.+.+.+. +.+.|++++..+.......+....               ..    ....|.
T Consensus         4 ~~~~~p~~~~v~~G~~v~l~C~~~~~p~-~~v~W~k~~~~~~~~~~~~~~~~~---------------~~----~~~~L~   63 (182)
T 1rhf_A            4 KLMGAPVKLTVSQGQPVKLNCSVEGMEE-PDIQWVKDGAVVQNLDQLYIPVSE---------------QH----WIGFLS   63 (182)
T ss_dssp             ---CCCEEEEEETTCCEEEEEEEESCSS-CCEEEEETTEECCSSEEEEEEEET---------------TE----EEEEEE
T ss_pred             EEEeCCcceEEeCCCcEEEEEEEeCCCC-CeEEEEECCeecCCCCceEEEecC---------------CC----ceEEEE
Confidence            33444443 3489999999999998776 899999999887655322211111               00    026799


Q ss_pred             EEEeecCCccceeEEEeeccccce-eeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCC-ceE
Q psy14542        178 IHQVDESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP-TIK  255 (371)
Q Consensus       178 i~~~~~~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~  255 (371)
                      |.+++.+| .|.|+|.+.+. .+. .....   .|.|.     .+|.+...+.... +..|+.+.|.|.+.+.|.| .+.
T Consensus        64 i~~~~~~d-~G~Y~C~~~~~-~~~~~~~~~---~l~V~-----~~p~~~~~~~~~~-~~~g~~~~l~C~~~g~p~p~~v~  132 (182)
T 1rhf_A           64 LKSVERSD-AGRYWCQVEDG-GETEISQPV---WLTVE-----GVPFFTVEPKDLA-VPPNAPFQLSCEAVGPPEPVTIV  132 (182)
T ss_dssp             ESSCCGGG-CEEEEEEESSC-TTCEECCCE---EEEEE-----CSCEEEECCCCEE-ECTTCCEEEEEEEECSSSCCEEE
T ss_pred             EeecCccc-CeEEEEEEEcC-CCcEEEEEE---EEEEe-----cCCeEEecCcceE-ecCCCEEEEEeEecCCCCCCEEE
Confidence            99999999 99999999987 443 33444   77777     6777777666666 9999999999999999999 999


Q ss_pred             EEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCce-eEEEEEEe
Q psy14542        256 WYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDK-MQLFIQYA  309 (371)
Q Consensus       256 W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~  309 (371)
                      |++++..+.....   ....|.|.++  +|+|.|+|.|.|..|... .++.|.|+
T Consensus       133 W~~~~~~~~~~~~---~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~Vk  182 (182)
T 1rhf_A          133 WWRGTTKIGGPAP---SPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHLQ  182 (182)
T ss_dssp             EEETTEECSCSEE---SSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             EEcCCeECCCCCC---CceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEeC
Confidence            9999988765432   4678999888  589999999999999874 47777663

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.91  E-value=1.5e-22  Score=177.21  Aligned_cols=185  Identities=17%  Similarity=0.331  Sum_probs=143.5

Q ss_pred             eeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe---c
Q psy14542         98 VEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML---S  172 (371)
Q Consensus        98 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~---~  172 (371)
                      |.+.......+.+|+.++|.|.+.+.+. +.++|+++  +..+.....          ...+         ++.+.   .
T Consensus         2 P~i~~~~~~~~~~G~~v~l~C~~~g~p~-p~v~W~~~~~g~~~~~~~~----------~~~~---------~~~~~~~~~   61 (389)
T 2jll_A            2 PHIIQLKNETTYENGQVTLVCDAEGEPI-PEITWKRAVDGFTFTEGDK----------SLDG---------RIEVKGQHG   61 (389)
T ss_dssp             CEEEECCCEEEETTSEEEEEEEEECSSC-CEEEEEETTTTEEECC--C----------CSSS---------SEEEEECSS
T ss_pred             CeEEecCceEEeCCCeEEEEEEeecccC-CeEEEEeCCCCceeccCcC----------CCCC---------eEEEeccCC
Confidence            4455555556688999999999999887 89999999  877754210          0011         22221   2


Q ss_pred             cceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCC
Q psy14542        173 SGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP  252 (371)
Q Consensus       173 ~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~  252 (371)
                      .+.|.|.+++.+| +|.|+|.+.|. .|......   .|.|.     .+|.+...+.... +..|+.+.|.|.+.|.|.+
T Consensus        62 ~~~L~i~~v~~~D-~G~Y~C~a~n~-~g~~~~~~---~l~V~-----~~P~~~~~~~~~~-~~~g~~~~l~C~~~g~p~~  130 (389)
T 2jll_A           62 SSSLHIKDVKLSD-SGRYDCEAASR-IGGHQKSM---YLDIE-----YAPKFISNQTIYY-SWEGNPINISCDVKSNPPA  130 (389)
T ss_dssp             EEEEEEESCCGGG-CEEEEEEEECS-SCEEEEEE---EEEEE-----EEEEECCSCCEEE-ECTTCCEEEEECEEEESCC
T ss_pred             cceEEEcccChhh-CEEEEEEEEeC-CCCcceEE---EEEEE-----eCCEEecCcceEE-eccCCEEEEEEEEEecCCC
Confidence            3689999999999 99999999998 77766666   88888     6677665554444 7899999999999999999


Q ss_pred             ceEEEeCCcccccCC--ceEE----ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542        253 TIKWYKQDSPVEESD--RIQR----IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       253 ~v~W~~~~~~~~~~~--~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      .+.|++++..+....  ++..    ....|.|.++..+|+|.|+|.|.|..|.....+.|.+...|.
T Consensus       131 ~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~  197 (389)
T 2jll_A          131 SIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPS  197 (389)
T ss_dssp             EEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCC
T ss_pred             eEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCC
Confidence            999999999887653  3332    234799999999999999999999999988888888876655

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.91  E-value=5e-24  Score=182.14  Aligned_cols=230  Identities=14%  Similarity=0.199  Sum_probs=141.8

Q ss_pred             EecCCc-eeeecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEE
Q psy14542        100 IASSNQ-VVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELI  177 (371)
Q Consensus       100 ~~~~~~-~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~  177 (371)
                      +...+. ..+.+|+.+.|.|.+.+. +. +.+.|++++.....    .+...  .....+.+.... +..........|.
T Consensus         6 v~~~p~~~~v~~G~~v~L~C~~~~~~p~-~~v~W~k~~~~~~~----~i~~~--~~~~~~r~~~~~-~~~~~~~~~~~L~   77 (327)
T 2wng_A            6 VIQPDKSVSVAAGESAILHCTVTSLIPV-GPIQWFRGAGPARE----LIYNQ--KEGHFPRVTTVS-ESTKRENMDFSIS   77 (327)
T ss_dssp             EECCCSEEEEETTSCEEECCEESCCCSC-CCEEEEESCSTTCE----EEEET--TSSCCTTEEECC----CTTCCBCCEE
T ss_pred             EEcCCCceEEecCCcEEEEEEccCcCCC-ceEEEEECCCCCce----EEEEc--CCCCcceeeeec-ccccccCceeEEE
Confidence            334343 344899999999999887 55 79999998743210    00000  000000000000 0000002235799


Q ss_pred             EEEeecCCccceeEEEeeccccceee--eeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCC--c
Q psy14542        178 IHQVDESDRYRSYQCRGVNKLTGASL--LSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP--T  253 (371)
Q Consensus       178 i~~~~~~d~~g~y~C~~~~~~~~~~~--~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~  253 (371)
                      |.+++.+| +|.|+|.+.+. .+...  .......|.|...+  .+|.+. .+ ... +..|+.+.|.|.+.+.|++  .
T Consensus        78 I~~v~~~D-~G~Y~C~a~n~-~~~~~~~~~~~~~~l~V~~~p--~~p~i~-~~-~~~-~~~g~~~~l~C~~~g~p~~~~~  150 (327)
T 2wng_A           78 ISNITPAD-AGTYYCVKFRK-GSPDTEFKSGAGTELSVRAKP--SAPVVS-GP-AAR-ATPQHTVSFTCESHGFSPRDIT  150 (327)
T ss_dssp             ECSCCGGG-CEEEEEEEEES-STTCEEEEECCCEEEEEEBCC--CCCEEE-CC-SSC-BCTTCEEEEEEEEEEEBSSCCE
T ss_pred             EccCcccc-CeEEEEEeecC-CCcceeEeecCcEEEEEEecC--CCceee-cc-ccc-cCCCCEEEEEEEEeCccCCCcE
Confidence            99999999 99999999987 44211  11112266666321  223332 22 234 8899999999999987765  8


Q ss_pred             eEEEeCCcccccCCceE---------EecceEEEeccCCCCCeEEEEEEEcCCCCc---eeEEEE--EEecCcccccccc
Q psy14542        254 IKWYKQDSPVEESDRIQ---------RIGSSLSISHVEESDSGVWNCVANNSEGQD---KMQLFI--QYAHGKYHMLSSG  319 (371)
Q Consensus       254 v~W~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~---~~~~~l--~v~~~p~~~~~~~  319 (371)
                      +.|+++|..+.......         ...+.|.|.....+|.|.|+|.|.|..+..   ..+..+  .+..+|.      
T Consensus       151 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~------  224 (327)
T 2wng_A          151 LKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPT------  224 (327)
T ss_dssp             EEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCE------
T ss_pred             EEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCE------
Confidence            99999998876543211         122357787777778899999999988763   333333  2344555      


Q ss_pred             eEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCC--ccccC
Q psy14542        320 ELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP--TIKYR  371 (371)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p--~i~W~  371 (371)
                         +.....                  .+.+|+.++|.|.+.|+|+|  .|+|+
T Consensus       225 ---i~~~~~------------------~~~~G~~v~l~C~~~g~~p~~~~v~W~  257 (327)
T 2wng_A          225 ---LEVTQQ------------------PVRAENQVNVTCQVRKFYPQRLQLTWL  257 (327)
T ss_dssp             ---EEEEEE------------------CCSSTTCCEEEEEEEEEBSSCEEEEEE
T ss_pred             ---EEEecC------------------CcCCCCcEEEEEEEccccCCCcEEEEE
Confidence               331111                  24589999999999996554  79996

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.91  E-value=1.1e-23  Score=166.13  Aligned_cols=160  Identities=14%  Similarity=0.152  Sum_probs=116.8

Q ss_pred             EEEeccCcEEEEEEe--cCCCCCCeeEEEeCCEEEe--------------------------eCCeeEEEEccCCcCCCe
Q psy14542         21 VVVDVGHRIELHCRV--SPKRLSSAKAWLKDGLVLR--------------------------RNSDEVLVLDRVQREDAG   72 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~--~~~~~~~~~~W~~~~~~~~--------------------------~~~~~~l~i~~~~~~d~G   72 (371)
                      +.+..|++++|.|..  ..+.|.+.+.|+|+|..+.                          ......|.|.+++.+|+|
T Consensus         3 Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   82 (203)
T 4fa8_A            3 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG   82 (203)
T ss_dssp             CEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             eEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHCe
Confidence            678999999999953  3567889999999652110                          014568999999999999


Q ss_pred             EEEEEEEcCCCCeEEEEEEEEecceeeEecCCceee-ecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEccc
Q psy14542         73 MYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVV-DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRV  151 (371)
Q Consensus        73 ~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~-~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~  151 (371)
                      .|+|.+.|..+.....+.|.|. .|+.+...+.... .+|+.+.|.|.+.|.|. +.++|++++..+......       
T Consensus        83 ~Y~C~a~n~~g~~~~~~~l~V~-~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~-P~v~W~~~~~~~~~~~~~-------  153 (203)
T 4fa8_A           83 NYLCRMKLGETEVTKQEHLSVV-KPLTLSVHSERSQFPDFSVLTVTCTVNAFPH-PHVQWLMPEGVEPAPTAA-------  153 (203)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEE-EEEEEEEEEEECCSSCSCCEEEEEEEEEESC-CEEEECCC-----------------
T ss_pred             EEEEEEEcCCCcEEEEEEEEec-CCceeeecceeEEEcCCCEEEEEEEcCCCCC-CEEEEEECCeeecCcccc-------
Confidence            9999999988888888999998 6666665554433 78999999999999888 899999876544321100       


Q ss_pred             CcCCCeeEEEEEeCCceeEeccce---EEEEEeecCCccceeEEEeeccccceeee
Q psy14542        152 QREDAGMYQCHIEDGKYHMLSSGE---LIIHQVDESDRYRSYQCRGVNKLTGASLL  204 (371)
Q Consensus       152 ~~~~~g~y~~~~~~~~~~~~~~~~---l~i~~~~~~d~~g~y~C~~~~~~~~~~~~  204 (371)
                                   ++++.+..++.   +.|.+++.+| .|.|+|.|.|. .|....
T Consensus       154 -------------~~r~~~~~~g~l~il~i~~v~~~D-~G~YtC~A~N~-~G~a~~  194 (203)
T 4fa8_A          154 -------------NGGVMKEKDGSLSVAVDLSLPKPW-HLPVTCVGKND-KEEAHG  194 (203)
T ss_dssp             ---------------CCEECTTSCEEEEEEEEECSSC-CCCEEEEEESS-SCEEEE
T ss_pred             -------------cceEEEeCCCCEEEEEECCCCHHH-CEEEEEEEEcC-CCEEEE
Confidence                         12333333343   4557899999 99999999999 776543

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.91  E-value=1.7e-22  Score=158.48  Aligned_cols=176  Identities=18%  Similarity=0.317  Sum_probs=131.2

Q ss_pred             cceEEEeCCCcEEEec-cCcEEEEEEecCCCCC--CeeEEEeCCEEEeeC----CeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542         10 SLSIEMSPSGQVVVDV-GHRIELHCRVSPKRLS--SAKAWLKDGLVLRRN----SDEVLVLDRVQREDAGMYQCHVSADD   82 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~-G~~v~l~C~~~~~~~~--~~~~W~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~   82 (371)
                      +|.+.. +.. ..+.+ |++++|.|.+. +.+.  +.+.|++++..+...    ....|.|.+++.+|+|.|+|.+.+. 
T Consensus         3 ~P~i~~-~~~-~~v~~~G~~v~l~C~~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~-   78 (190)
T 2wv3_A            3 EPRIVT-SEE-VIIRDSLLPVTLQCNLT-SSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFV-   78 (190)
T ss_dssp             CCEEEE-CCC-EECCCSSSCEEEEEEEE-ECSSCEEEEEEEETTEECTTCCBCCSEEEEEESSCCGGGCEEEEEEEEET-
T ss_pred             CCcccc-cce-EEEccCCceEEEEEEec-cCCCCceEEEEEECCEECcccceEeccEEEEEecCCcccCEEEEEEEEeC-
Confidence            466655 444 56777 99999999654 3444  789999999988754    5678999999999999999999998 


Q ss_pred             CCeEEEEEEEEecceeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEee--CCEEeeeCCeeEEEEcccCcCCCeeE
Q psy14542         83 DSAQMSAQVILGGELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLK--DGLVLRRNSDEVLVLDRVQREDAGMY  159 (371)
Q Consensus        83 ~~~~~~~~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~--~~~~~~~~~~~~~~~~~~~~~~~g~y  159 (371)
                      +.....+.|.|. .+|.+...+. ..+.+|+.+.|.|.+.+.|. +.+.|++  ++..+....            ..+.|
T Consensus        79 ~~~~~~~~l~V~-~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~-p~i~W~~~~~g~~~~~~~------------~~~~~  144 (190)
T 2wv3_A           79 SAPKANATIEVK-AAPDITGHKRSENKNEGQDAMMYCKSVGYPH-PEWMWRKKENGVFEEISN------------SSGRF  144 (190)
T ss_dssp             TEEEEEEEEEEE-CCCEEEEECSEEEEETTSCEEEEEEEECSSC-CEEEEEEEETTEEEECCC------------TTSCE
T ss_pred             CcccccEEEEEe-cCCcccccCCcceeeCCCcEEEEEEeCccCC-CceEEEEcCCCceeeeec------------CCCeE
Confidence            777888899998 5566554443 34589999999999998887 8999999  677664321            11111


Q ss_pred             EEEEeCCceeEeccceEEEEEee-cCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542        160 QCHIEDGKYHMLSSGELIIHQVD-ESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT  214 (371)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~i~~~~-~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~  214 (371)
                      ......      ....|.|.++. .+| .|.|+|.+.|. .|....+.   .|.|.
T Consensus       145 ~~~~~~------~~~~L~i~~~~~~~d-~G~Y~C~a~N~-~g~~~~~~---~l~V~  189 (190)
T 2wv3_A          145 FIINKE------NYTELNIVNLQITED-PGEYECNATNS-IGSASVST---VLRVR  189 (190)
T ss_dssp             EEEECS------SEEEEEECSCCTTTS-CEEEEEEEECS-SCEEEEEE---EEEEE
T ss_pred             EEecCC------CeeEEEEEeccccCC-CEEEEEEEEec-CCcceeEE---EEEEE
Confidence            111101      01479999999 799 99999999999 77766666   66654

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.91  E-value=3.2e-23  Score=163.43  Aligned_cols=176  Identities=15%  Similarity=0.184  Sum_probs=120.6

Q ss_pred             eeecCCcEEEEEEe---cCCCCCceEEEeeCCEEeeeC-----CeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEE
Q psy14542        107 VVDVGHRIELHCRV---SPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELII  178 (371)
Q Consensus       107 ~~~~g~~v~l~C~~---~~~~~~~~v~W~~~~~~~~~~-----~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i  178 (371)
                      .+..|+.++|.|..   .+.|. +.++|+|++......     .........   ...+.+.....      .....|.|
T Consensus         4 ta~~Ge~v~L~C~~~~v~~~p~-~~V~W~k~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~------~~~~~L~I   73 (203)
T 4fa8_A            4 TAFLGERVTLTSYWRRVSLGPE-IEVSWFKLGPGEEQVLIGRMHHDVIFIEW---PFRGFFDIHRS------ANTFFLVV   73 (203)
T ss_dssp             EEETTCCEEEEEECSSTTCSTT-SEEEEEEEETTTEEEEEEEEETTEEEECG---GGBTTEEEEEE------TTEEEEEE
T ss_pred             EEEcCCCEEEEeeeeccCCCCC-cEEEEEEcCCCcceEEEEecCCceEEeec---cccceEEEEEc------CCEEEEEE
Confidence            44789999999964   45566 899999976432211     000111111   01111111111      12257999


Q ss_pred             EEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEe
Q psy14542        179 HQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYK  258 (371)
Q Consensus       179 ~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~  258 (371)
                      .+++.+| +|.|+|.+.|. .|......   .|.|.     .+|.+...+.... +.+|+.+.|.|.+.|.|.|.++|++
T Consensus        74 ~~v~~~D-~G~Y~C~a~n~-~g~~~~~~---~l~V~-----~p~~~~~~~~~~~-v~~g~~~~l~C~~~G~P~P~v~W~~  142 (203)
T 4fa8_A           74 TAANISH-DGNYLCRMKLG-ETEVTKQE---HLSVV-----KPLTLSVHSERSQ-FPDFSVLTVTCTVNAFPHPHVQWLM  142 (203)
T ss_dssp             SSCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEE-----EEEEEEEEEEECC-SSCSCCEEEEEEEEEESCCEEEECC
T ss_pred             ccCCHHH-CeEEEEEEEcC-CCcEEEEE---EEEec-----CCceeeecceeEE-EcCCCEEEEEEEcCCCCCCEEEEEE
Confidence            9999999 99999999998 77777766   88887     6777777777766 8999999999999999999999998


Q ss_pred             CCcccc----cCCceEE-ecce---EEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542        259 QDSPVE----ESDRIQR-IGSS---LSISHVEESDSGVWNCVANNSEGQDKMQ  303 (371)
Q Consensus       259 ~~~~~~----~~~~~~~-~~~~---l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  303 (371)
                      +++.+.    .+.++.. .+++   +.|.++..+|+|.|+|.|.|..|+....
T Consensus       143 ~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v  195 (203)
T 4fa8_A          143 PEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGV  195 (203)
T ss_dssp             C------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEE
T ss_pred             CCeeecCcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence            775442    2334442 3444   4456899999999999999999987653

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.91  E-value=5.7e-23  Score=162.93  Aligned_cols=162  Identities=14%  Similarity=0.167  Sum_probs=122.5

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSA   89 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   89 (371)
                      ..+.+|+.+.|.|....+.|.+.+.|++||..+..+           ...+|.|.+++.+|+|.|+|.+.|  +......
T Consensus        12 ~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~a~~~~   89 (207)
T 3rbs_A           12 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKATNHS   89 (207)
T ss_dssp             EEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TTEEEEE
T ss_pred             eEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CCeEEEE
Confidence            689999999999977666899999999999998643           223799999999999999999998  4444444


Q ss_pred             EEEEec--------------------ceeeEecCCceeeecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEE
Q psy14542         90 QVILGG--------------------ELVEIASSNQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVL  148 (371)
Q Consensus        90 ~l~v~~--------------------~~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~  148 (371)
                      .+.+..                    .+|.+.......+.+|+.+.|.|.+.+. |. +.++|+|++..+.....+.   
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~~g~~v~l~C~v~g~~P~-p~i~W~k~g~~l~~~~~~~---  165 (207)
T 3rbs_A           90 TVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKE-THIVWYKDEREISVDEKHD---  165 (207)
T ss_dssp             EEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEETTTEEEEEEEEESCCTT-CEEEEEETTEEECCCCCCC---
T ss_pred             EEEEEccchhhhcccccccccccccCCCCceEecCCcEEcCCCcEEEEEEEeCCCCC-CEEEEEECCEECCCCCceE---
Confidence            443210                    1344444333455899999999999998 66 8999999999886543210   


Q ss_pred             cccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeee
Q psy14542        149 DRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSL  213 (371)
Q Consensus       149 ~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v  213 (371)
                          . .               .....|.|.++..+| .|.|+|.+.|. .|....+.   .|.+
T Consensus       166 ----~-~---------------~~~~~L~I~~v~~~D-~G~Y~C~a~N~-~G~~~~~~---~L~~  205 (207)
T 3rbs_A          166 ----F-K---------------DGICTLLITEFSKKD-AGIYEVILKDD-RGKDKSRL---KLVD  205 (207)
T ss_dssp             ----C-S---------------SEEEEEEETTCCGGG-CEEEEEEEEET-TEEEEEEE---EECC
T ss_pred             ----c-C---------------CCEEEEEECCCCccc-CEEEEEEEEcC-CCEEEEEE---EEec
Confidence                0 0               011469999999999 99999999999 88776665   5543

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.90  E-value=7.1e-23  Score=165.92  Aligned_cols=181  Identities=19%  Similarity=0.269  Sum_probs=134.8

Q ss_pred             ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542        105 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES  184 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~  184 (371)
                      ...+.+|+.+.|.|.+.+.+. +.+.|++++..+.......                    ..........|.|.+++..
T Consensus        28 ~~~v~~G~~v~L~C~~~~~p~-~~v~W~~~~~~~~~~~~~~--------------------~~~~~~~~~~L~i~~~~~~   86 (231)
T 3ojm_B           28 LHAVPAANTVKFRCPAGGNPM-PTMRWLKNGKEFKQEHRIG--------------------GYKVRNQHWSLIMESVVPS   86 (231)
T ss_dssp             CEEEETTSCEEEECCEEEESC-CEEEEEETTEECCGGGSTT--------------------CCEEEGGGTEEEECSCCGG
T ss_pred             eEEEccCCCEEEEEecccCCC-CeEEEEECCcccccccccc--------------------ceeeecCcceEEEecCCcc
Confidence            334589999999999988776 7999999998876542110                    0111122357999999999


Q ss_pred             CccceeEEEeeccccceeeeeeccceeeeecchhccccceee-eeeeeeeeecCCeEEEEEEeecCCCCceEEEe----C
Q psy14542        185 DRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF-EKHRILNVKKDESVILPCSAQGNPLPTIKWYK----Q  259 (371)
Q Consensus       185 d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~----~  259 (371)
                      | .|.|+|.+.+. .+......   .+.|..... .+|.+.. .+.... +..|+.+.|.|.+.+.|.+.+.|++    +
T Consensus        87 d-~G~Y~C~~~n~-~~~~~~~~---~l~V~~~~~-~~p~~~~~~~~~~~-~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~  159 (231)
T 3ojm_B           87 D-KGNYTCVVENE-YGSINHTY---HLDVVERSR-HRPILQAGLPANAS-TVVGGDVEFVCKVYSDAQPHIQWIKHVEKN  159 (231)
T ss_dssp             G-CEEEEEEEEET-TEEEEEEE---EEEEECCCC-CCCEECTTCSCCEE-EETTCCEEEECCEECSSCCEEEEEEECCBT
T ss_pred             c-CEEEEEEEecc-cCcccccE---EEEEEcCCC-CCCceeeccCCceE-EEeCCcEEEEEEEecCCCCEEEEEECCCCC
Confidence            9 99999999988 66665555   677764322 1222222 233444 8899999999999999999999999    7


Q ss_pred             CcccccCCceE-----------EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542        260 DSPVEESDRIQ-----------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       260 ~~~~~~~~~~~-----------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      |..+.......           ...+.|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.
T Consensus       160 g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  224 (231)
T 3ojm_B          160 GSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQ  224 (231)
T ss_dssp             TBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC-
T ss_pred             CccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCC
Confidence            77664443211           1235799999999999999999999999999999999998877

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.90  E-value=9.3e-23  Score=163.67  Aligned_cols=169  Identities=19%  Similarity=0.312  Sum_probs=132.4

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCe-E
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSA-Q   86 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~   86 (371)
                      ...++|.+.|.. ..+.+|+++.|.|.+ .+.|.+.+.|++++..+.......|.|.+++.+|+|.|+|.+.+..+.. .
T Consensus        16 ~~~~~i~~~p~~-~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s   93 (218)
T 3k0w_A           16 PRGSKITVNPES-KAVLAGQFVKLCCRA-TGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFS   93 (218)
T ss_dssp             ---CCEEECCCC-EEEETTSBEEEECEE-TTTTSSEEEEEETTEECTTCCSSEEEETTCCGGGCEEEEEEEECTTCCEEC
T ss_pred             CCCCEEEECCCC-eEEeCCCcEEEEeee-cCCCCCEEEEEECCEECCCCCCCEEEEccCChhhCeEeEEEEEcCCCCcee
Confidence            456789999988 999999999999955 6678889999999999877677899999999999999999999887654 4


Q ss_pred             EEEEEEEecce--------------eeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEccc
Q psy14542         87 MSAQVILGGEL--------------VEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRV  151 (371)
Q Consensus        87 ~~~~l~v~~~~--------------~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~  151 (371)
                      ..+.|.|...+              +.+...+. ..+..|+.+.|.|.+.+.+. +.+.|++++..+....         
T Consensus        94 ~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~-~~v~W~~~~~~~~~~~---------  163 (218)
T 3k0w_A           94 QWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPI-PHYQWFKNELPLTHET---------  163 (218)
T ss_dssp             CCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSC-CEEEEEETTEECTTCC---------
T ss_pred             eEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCC-CeEEEEECCEECCCCC---------
Confidence            45677776321              34444443 44589999999999988877 8999999998775432         


Q ss_pred             CcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccce-eeeeeccceeeee
Q psy14542        152 QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLT  214 (371)
Q Consensus       152 ~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~  214 (371)
                                           ...|.|.+++..| .|.|+|.+.|. .|. ....+   .|.|.
T Consensus       164 ---------------------~~~L~i~~v~~~d-~G~Y~C~a~n~-~g~~~s~~~---~l~V~  201 (218)
T 3k0w_A          164 ---------------------KKLYMVPYVDLEH-QGTYWCHVYND-RDSQDSKKV---EIIID  201 (218)
T ss_dssp             ---------------------SSEEEESSCCGGG-CEEEEEEEECS-SCEEECCCE---EEEEC
T ss_pred             ---------------------CCEEEEeecChhc-CEEEEEEEEcC-CCCceeeeE---EEEEe
Confidence                                 1578899999999 99999999997 554 33333   55555

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.90  E-value=3.4e-23  Score=170.35  Aligned_cols=210  Identities=15%  Similarity=0.188  Sum_probs=116.2

Q ss_pred             CCcCCCeEEEEEEEcCCCCeEEEEEEEEecceeeEecCC-ceeeecCCcEEEEEEecCCCC----CceEEEeeCC--EEe
Q psy14542         66 VQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSN-QVVVDVGHRIELHCRVSPKRL----SSAKAWLKDG--LVL  138 (371)
Q Consensus        66 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~~~~g~~v~l~C~~~~~~~----~~~v~W~~~~--~~~  138 (371)
                      ++.+|+|.|+|.+.   |.....+.+.+. .++.+...+ ...+.+|++++|.|.+.+.++    .+.+.|++++  ..+
T Consensus        11 v~~~dsg~Y~C~a~---g~~~~~~~~~~~-~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~   86 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GYSFTNYWMNWL-RELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSP   86 (254)
T ss_dssp             -------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCC
T ss_pred             ecCCccEEEEEcCc---hhhhhhhhhhee-eceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCc
Confidence            68899999999998   333334444444 344444433 445589999999999988773    2789999843  211


Q ss_pred             eeCCeeEEEEcc--cCcCCCeeEEEEEeCCceeEe---ccceEEEEEeecCCccceeEEEeecccccee-eeeeccceee
Q psy14542        139 RRNSDEVLVLDR--VQREDAGMYQCHIEDGKYHML---SSGELIIHQVDESDRYRSYQCRGVNKLTGAS-LLSVNRGRLS  212 (371)
Q Consensus       139 ~~~~~~~~~~~~--~~~~~~g~y~~~~~~~~~~~~---~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~-~~~~~~~~l~  212 (371)
                      .     .+....  .....         .+++...   ....|.|.+++.+| +|.|+|.+.+. .+.. ....   .+.
T Consensus        87 ~-----~~~~~~~~~~~~~---------~~r~~~~~~~~~~~L~I~~v~~~D-~G~Y~C~a~n~-~~~~~~~~~---~l~  147 (254)
T 2c1o_A           87 K-----RLIYLVSKLDSGD---------PDRFTGSGSGTDFTLKISRVEAED-LGIYYCVQGSH-FPPTFGAGT---KLE  147 (254)
T ss_dssp             E-----EEEETTTEECTTC---------CTTEEEEEETTEEEEEESSCCGGG-CSEEEEEECSS-SSCEEBCCE---EEE
T ss_pred             e-----EEEEeccccCCCc---------cceEEEecCCCEEEEEECcCCccc-CEEEEEEEEcC-cceEecCCE---EEE
Confidence            1     011000  00001         1233222   22479999999999 99999999987 3321 1122   455


Q ss_pred             eecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CC-CceEEEeCCcccccCC-c----------eEEecceEEEe
Q psy14542        213 LTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PL-PTIKWYKQDSPVEESD-R----------IQRIGSSLSIS  279 (371)
Q Consensus       213 v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~-~----------~~~~~~~l~i~  279 (371)
                      |...  ..+|.+........ ...|+.++|.|.+.|. |+ +.+.|+++|..+.... .          .....+.|.|.
T Consensus       148 V~~~--~~~P~v~~~~~~~~-~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~  224 (254)
T 2c1o_A          148 LKRA--DAAPTVSIFPPSSE-QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLT  224 (254)
T ss_dssp             ECCC--CBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEE
T ss_pred             ECCC--CCCCeeEeecCChh-hccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEec
Confidence            5421  13555555443333 4468899999999884 44 4699999998776541 1          01123579999


Q ss_pred             ccCCCCCeEEEEEEEcCCCCce
Q psy14542        280 HVEESDSGVWNCVANNSEGQDK  301 (371)
Q Consensus       280 ~~~~~d~G~Y~C~a~n~~g~~~  301 (371)
                      ++..+|+|.|+|.|.|......
T Consensus       225 ~~~~~d~G~Y~C~a~n~~~~~~  246 (254)
T 2c1o_A          225 KDEYERHNSYTCEATHKTSTSP  246 (254)
T ss_dssp             HHHHHTCCEEEEEEECTTCSSC
T ss_pred             cccccCCCeEEEEEEcCCCCCc
Confidence            9999999999999999887653

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.90  E-value=4.8e-23  Score=164.66  Aligned_cols=197  Identities=21%  Similarity=0.352  Sum_probs=136.8

Q ss_pred             EEecceeeEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeE
Q psy14542         92 ILGGELVEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHM  170 (371)
Q Consensus        92 ~v~~~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~  170 (371)
                      .+...+|.+...+.. .+.+|+.+.|.|.+.+.+. +.+.|++++..+......           .........++... 
T Consensus         4 ~~~~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~-   70 (212)
T 2v9r_A            4 RQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPT-PTIEWYKGGERVETDKDD-----------PRSHRMLLPSGSLF-   70 (212)
T ss_dssp             --CCEEEEEEECCCCEEECTTCCEEECCEEEEESC-CEEEEEETTEECCCTTTC-----------TTCSEEECTTSCEE-
T ss_pred             CcccCCcceecCCCceEEeCCCcEEEEEEcCCCCC-CEEEEEECCEEeeccccc-----------cccceEEecCCcEE-
Confidence            344456666665554 4489999999999988777 799999999887643210           00000000011110 


Q ss_pred             eccceEEEEEeecCCccceeEEEeecccccee-eeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEe-ec
Q psy14542        171 LSSGELIIHQVDESDRYRSYQCRGVNKLTGAS-LLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSA-QG  248 (371)
Q Consensus       171 ~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~  248 (371)
                        ...+.|.+++..| .|.|+|.+.+. .+.. ....   .+.|..    .++.+...+.... +..|+.+.|.|.+ .+
T Consensus        71 --~~~l~i~~~~~~d-~G~Y~C~~~n~-~g~~~~~~~---~l~V~~----~~~~~~~~~~~~~-~~~g~~~~l~C~~~~~  138 (212)
T 2v9r_A           71 --FLRIVHGRKSRPD-EGVYVCVARNY-LGEAVSHDA---SLEVAI----LRDDFRQNPSDVM-VAVGEPAVMECQPPRG  138 (212)
T ss_dssp             --ESSCCCCSSCCCS-CEEEEEEEEET-TEEEECCCE---EEEECE----ECSSCSBCCCCEE-EETTSCEEEECBCCCE
T ss_pred             --EEEEEecCCCccc-CeEEEEEEECC-CCceeecce---EEEEEe----ccccceeCCCceE-ecCCCcEEEEEecCCC
Confidence              0245566778999 99999999987 5543 2333   566653    2333444444455 8999999999998 88


Q ss_pred             CCCCceEEEeCCcccccC-CceEEecceEEEeccCCCCCeEEEEEEEcCCCCcee-EEEEEEecCcc
Q psy14542        249 NPLPTIKWYKQDSPVEES-DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKM-QLFIQYAHGKY  313 (371)
Q Consensus       249 ~p~~~v~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~p~  313 (371)
                      .|.+.+.|++++..+... .++...++.|.|.++..+|+|.|+|.|.|..|.... .+.|.|.++|.
T Consensus       139 ~p~~~v~W~~~~~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~  205 (212)
T 2v9r_A          139 HPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPS  205 (212)
T ss_dssp             ESCCEEEEEETTEEECTTSTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred             CCCCEEEEEECCccCCCCcceEEccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCch
Confidence            999999999999988754 345567789999999999999999999999998654 48999998888

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.90  E-value=1.1e-24  Score=187.62  Aligned_cols=199  Identities=20%  Similarity=0.301  Sum_probs=147.5

Q ss_pred             CCeEEEEEEEcCCCCeEEEEEEEEecceeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEE
Q psy14542         70 DAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVL  148 (371)
Q Consensus        70 d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~  148 (371)
                      |.|.|+|.+.+....    +.+.+. .+|.+...+. ..+.+|+.+.|.|.+.+.+. +.+.|++++..+.....     
T Consensus       136 ~~~~~~C~~~~~l~~----l~~~~c-~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~-p~i~W~~~~~~~~~~~~-----  204 (347)
T 2ifg_A          136 PEQKLQCHGQGPLAH----MPNASC-GVPTLKVQVPNASVDVGDDVLLRCQVEGRGL-EQAGWILTELEQSATVM-----  204 (347)
T ss_dssp             GGGCCCCSSSSCSSC----CCCTTC-CCCEEEEECCSSCCBTTCCEEEEEEEECSSC-CCCCEEESCCCSSEEEC-----
T ss_pred             cccCCCCCCChHHhc----CCcccC-CCCceeccCCceEEeCCCcEEEEEEEecCCC-CEEEEEcCCceeecccc-----
Confidence            568899987652211    111222 3444444433 34489999999999988887 89999998865332110     


Q ss_pred             cccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccc-eeEEEeeccccceeeeeeccceeeeecchhccccceeee
Q psy14542        149 DRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYR-SYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFE  227 (371)
Q Consensus       149 ~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g-~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~  227 (371)
                                        ......++.|.|.+++..| .| .|+|.+.+. .|......   .+.|.     .+|.+   
T Consensus       205 ------------------~~~~~~~~~L~i~~v~~~D-~G~~Y~C~a~n~-~g~~~~~~---~l~V~-----~~P~i---  253 (347)
T 2ifg_A          205 ------------------KSGGLPSLGLTLANVTSDL-NRKNVTCWAEND-VGRAEVSV---QVNVS-----FPASV---  253 (347)
T ss_dssp             ------------------CCCCSSEEEEEEESCCSTT-TTCCEEECCEET-TEECCEEE---CCCCB-----EEEEE---
T ss_pred             ------------------cceecccceEEEeeCChHH-CCCeEEEEEEcC-CCCEEEEE---EEEEc-----CCCee---
Confidence                              1111223689999999999 99 999999998 77666655   67776     55654   


Q ss_pred             eeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE-----------ecceEEEeccCCCCCeEEEEEEEcC
Q psy14542        228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR-----------IGSSLSISHVEESDSGVWNCVANNS  296 (371)
Q Consensus       228 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~a~n~  296 (371)
                       .... +..|+.+.|.|.+.|.|.|.+.|+++|..+........           .+++|.|.++..+|+|.|+|.|.|.
T Consensus       254 -~~~~-~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~  331 (347)
T 2ifg_A          254 -QLHT-AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP  331 (347)
T ss_dssp             -EECC-CEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             -eecc-CccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecC
Confidence             1122 66799999999999999999999999998876554332           2456999999999999999999999


Q ss_pred             CCCceeEEEEEEecCc
Q psy14542        297 EGQDKMQLFIQYAHGK  312 (371)
Q Consensus       297 ~g~~~~~~~l~v~~~p  312 (371)
                      .|....++.|.|.++|
T Consensus       332 ~G~~~~~~~l~V~~~P  347 (347)
T 2ifg_A          332 FGQASASIMAAFMDNP  347 (347)
T ss_dssp             TEEEEEEEEECSCCCC
T ss_pred             CCceeeEEEEEecCCC
Confidence            9999999999988765

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.90  E-value=1.1e-22  Score=163.26  Aligned_cols=174  Identities=20%  Similarity=0.325  Sum_probs=132.4

Q ss_pred             eeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceE
Q psy14542         98 VEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGEL  176 (371)
Q Consensus        98 ~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l  176 (371)
                      +.+...+. ..+.+|+.+.|.|.+.+.+. +.+.|++++..+....                              ...|
T Consensus        19 ~~i~~~p~~~~v~~G~~v~L~C~~~~~p~-~~v~W~~~~~~~~~~~------------------------------~~~L   67 (218)
T 3k0w_A           19 SKITVNPESKAVLAGQFVKLCCRATGHPF-VQYQWFKMNKEIPNGN------------------------------TSEL   67 (218)
T ss_dssp             CCEEECCCCEEEETTSBEEEECEETTTTS-SEEEEEETTEECTTCC------------------------------SSEE
T ss_pred             CEEEECCCCeEEeCCCcEEEEeeecCCCC-CEEEEEECCEECCCCC------------------------------CCEE
Confidence            34444443 34589999999999988776 8999999998765431                              1578


Q ss_pred             EEEEeecCCccceeEEEeecccccee-eeeeccceeeeecchhc----------cccceeeeeeeeeeeecCCeEEEEEE
Q psy14542        177 IIHQVDESDRYRSYQCRGVNKLTGAS-LLSVNRGRLSLTENKRL----------LSAAKMFEKHRILNVKKDESVILPCS  245 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~~~~~~----------~~p~~~~~~~~~~~~~~g~~~~l~C~  245 (371)
                      .|.+++..| .|.|+|.+.+. .+.. ....   .+.|......          .+|.+...+.... +..|+.+.|.|.
T Consensus        68 ~i~~v~~~d-~G~Y~C~~~n~-~~~~~s~~~---~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-v~~G~~v~L~C~  141 (218)
T 3k0w_A           68 IFNAVHVKD-AGFYVCRVNNN-FTFEFSQWS---QLDVCDIPESFQRSVDGVSESKLQICVEPTSQK-LMPGSTLVLQCV  141 (218)
T ss_dssp             EETTCCGGG-CEEEEEEEECT-TCCEECCCE---EEEEECCCGGGCTTCCSBCCSSCEEEECCCCEE-ECTTCCEEEECE
T ss_pred             EEccCChhh-CeEeEEEEEcC-CCCceeeEE---EEEEEccCcccccccccccCCCceEEECCCcee-ecCCCcEEEEEE
Confidence            899999999 99999999987 4432 3333   5666532110          1245555555555 899999999999


Q ss_pred             eecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCC-ceeEEEEEEecCcc
Q psy14542        246 AQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQ-DKMQLFIQYAHGKY  313 (371)
Q Consensus       246 ~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~p~  313 (371)
                      +.+.|.+.+.|++++..+....     ...|.|.++..+|+|.|+|.|.|..|. .+..+.|.|...+.
T Consensus       142 ~~g~p~~~v~W~~~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~~~  205 (218)
T 3k0w_A          142 AVGSPIPHYQWFKNELPLTHET-----KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNN  205 (218)
T ss_dssp             EEBSSCCEEEEEETTEECTTCC-----SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC---
T ss_pred             ecccCCCeEEEEECCEECCCCC-----CCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCCcc
Confidence            9999999999999998887653     468999999999999999999998887 67778888876554

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.90  E-value=2e-22  Score=157.98  Aligned_cols=173  Identities=23%  Similarity=0.379  Sum_probs=128.8

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHVSAD   81 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~   81 (371)
                      +|.+...|.. ..+.+|++++|.|.+ .+.|.+.+.|++++..+...        .+.+|.|.+++.+|+|.|+|.+.+.
T Consensus         2 ~~~~~~~~~~-~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   79 (189)
T 2v5t_A            2 MLTFREVVSP-QEFKQGEDAEVVCRV-SSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVE   79 (189)
T ss_dssp             CCEEEECCSS-EEEETTSCEEECCEE-ECSSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEET
T ss_pred             CceeeccCCC-EEEeCCCcEEEEEEE-cCCCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEc
Confidence            5677777887 899999999999965 45678899999998877642        4567999999999999999999987


Q ss_pred             CCCe--EEEEEEEEecceeeEecCCce---eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCC
Q psy14542         82 DDSA--QMSAQVILGGELVEIASSNQV---VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDA  156 (371)
Q Consensus        82 ~~~~--~~~~~l~v~~~~~~~~~~~~~---~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~  156 (371)
                      .+..  ...+.|.|. .+|.+...+..   .+..|+.+.|.|.+.+.|. +.+.|++++..+.......+          
T Consensus        80 ~~~~~~~~~~~l~v~-~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~-~~v~W~~~g~~~~~~~~~~~----------  147 (189)
T 2v5t_A           80 ARGEIDFRDIIVIVN-VPPAISMPQKSFNATAERGEEMTFSCRASGSPE-PAISWFRNGKLIEENEKYIL----------  147 (189)
T ss_dssp             TTTEEEEEEEEEEEE-EEEEEECSCCEEEEETTSCCCEEEECEEEEESC-CEEEEEETTEECCCSSSEEE----------
T ss_pred             CCCceEEEEEEEEec-CCCCcccccccccccccCCCcEEEEEEEccCCC-CeEEEEECCEECcCCCcEEE----------
Confidence            6554  345666666 45555544332   2378999999999988877 89999999998765432111          


Q ss_pred             eeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542        157 GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT  214 (371)
Q Consensus       157 g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~  214 (371)
                                   ...+..|.|.++..+| .|.|+|.+.|. .|....+.   .|.|.
T Consensus       148 -------------~~~~~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V~  187 (189)
T 2v5t_A          148 -------------KGSNTELTVRNIINSD-GGPYVCRATNK-AGEDEKQA---FLQVF  187 (189)
T ss_dssp             -------------ETTTTEEEECSCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEE
T ss_pred             -------------ecCCCEEEEcCCChhh-CeeEEEEEEeC-CCceeEEE---EEEEE
Confidence                         0112679999999999 99999999999 77766666   66654

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.90  E-value=5.5e-23  Score=162.83  Aligned_cols=181  Identities=24%  Similarity=0.362  Sum_probs=132.4

Q ss_pred             ceeeecCCcEEEEEE-ecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeec
Q psy14542        105 QVVVDVGHRIELHCR-VSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDE  183 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~-~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~  183 (371)
                      ...+.+|+.+.|.|. +.+.+..+.+.|++++..+.....                     ........+..|.|.+++.
T Consensus        17 ~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~---------------------~~~~~~~~~~~L~i~~v~~   75 (201)
T 3s97_C           17 EVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMD---------------------KRRFVSQTNGNLYIANVEA   75 (201)
T ss_dssp             CEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCS---------------------SSEEECTTTCCEEESSCCG
T ss_pred             eEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeC---------------------CCeEEEcCCCeEEECcCCc
Confidence            344589999999999 666544379999998876542211                     0111222346799999999


Q ss_pred             CCccceeEEEeeccccceeeeeeccceeeeecc--hhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCc
Q psy14542        184 SDRYRSYQCRGVNKLTGASLLSVNRGRLSLTEN--KRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDS  261 (371)
Q Consensus       184 ~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~--~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~  261 (371)
                      +| .|.|+|.+.+. .+..........+.+...  ....+|.+........ +..|+.+.|.|.+.+.|.+.+.|++++.
T Consensus        76 ~d-~G~Y~C~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~g~~~~l~C~~~g~p~p~v~W~~~~~  152 (201)
T 3s97_C           76 SD-KGNYSCFVSSP-SITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVY-ALMGQNVTLECFALGNPVPDIRWRKVLE  152 (201)
T ss_dssp             GG-CEEEEEEEEEG-GGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEE-EETTCCEEEEEEEEEESCCEEEEEETTB
T ss_pred             cc-CeEEEEEEEec-CCCcchhhcccceeeccccccCCCCCceEecCCceE-EecCCcEEEEEEccCCCCCceEEEeCCC
Confidence            99 99999999987 333332211112222211  1113455555554555 8999999999999999999999999999


Q ss_pred             ccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542        262 PVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA  309 (371)
Q Consensus       262 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  309 (371)
                      .+....++...++.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       153 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          153 PMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             CCCTTCEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cCCCceeecCCCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            887665555567899999999999999999999999999999988885

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.90  E-value=6.6e-23  Score=162.37  Aligned_cols=168  Identities=15%  Similarity=0.225  Sum_probs=126.1

Q ss_pred             eeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccce
Q psy14542         97 LVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE  175 (371)
Q Consensus        97 ~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~  175 (371)
                      .|.+...+. ..+.+|+.++|.|.+.+.+.+..+.|++++..+....                               ..
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~-------------------------------~~   55 (204)
T 3sgj_C            7 KAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA-------------------------------SS   55 (204)
T ss_dssp             BCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS-------------------------------SE
T ss_pred             CCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc-------------------------------cE
Confidence            344444444 4568999999999999887645699999998775431                               57


Q ss_pred             EEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CCCce
Q psy14542        176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PLPTI  254 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~v  254 (371)
                      |.|.+++.+| +|.|+|.+.+. .  .....   .|.|.     .+|.+...+. .. +.+|+.+.|.|.+.+. |.+.+
T Consensus        56 L~i~~v~~~D-~G~Y~C~a~n~-~--~s~~~---~l~V~-----~~p~~~~~~~-~~-v~~G~~v~L~C~~~~~~p~~~v  121 (204)
T 3sgj_C           56 YFIDAATVDD-SGEYRCQTQLS-T--LSDPV---QLEVH-----IGWLLLQAPR-WV-FKEEDPIHLRCHSWKNTALHKV  121 (204)
T ss_dssp             EEESSCCGGG-CEEEEEEETTS-B--CCCCE---EEEEE-----CSSEEEECSC-SE-EETTCCEEEEEEEGGGCCCEEE
T ss_pred             EEEecccccC-CEEEEEEeCCC-c--ccccE---EEEEe-----cCceEecCCc-ee-EeCCCcEEEEEEecCCCCCceE
Confidence            8999999999 99999999875 2  22233   66666     4444443333 34 8899999999999765 56889


Q ss_pred             EEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEc-CCCCceeEEEEEEecCcc
Q psy14542        255 KWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANN-SEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       255 ~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~v~~~p~  313 (371)
                      .|+++|..+...    ..++.|.|.++..+|+|.|+|.|.| ..+..+..+.|.|.+++.
T Consensus       122 ~W~k~g~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~  177 (204)
T 3sgj_C          122 TYLQNGKGRKYF----HHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLA  177 (204)
T ss_dssp             EEEETTEEEEEE----EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred             EEEECCcEeecc----cCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcCC
Confidence            999999876432    3467899999999999999999999 555667788899987665

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.90  E-value=6.8e-23  Score=159.81  Aligned_cols=163  Identities=18%  Similarity=0.191  Sum_probs=119.1

Q ss_pred             ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccce
Q psy14542         96 ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE  175 (371)
Q Consensus        96 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~  175 (371)
                      .+|.+...+...+.+|++++|.|.+.+ +. +.+.|+|++.....                               ....
T Consensus         7 ~~P~i~~~p~~~v~~G~~v~L~C~~~~-~~-~~~~W~k~g~~~~~-------------------------------~~~~   53 (184)
T 2gi7_A            7 PKPSLQALPSSLVPLEKPVTLRCQGPP-GV-DLYRLEKLSSSRYQ-------------------------------DQAV   53 (184)
T ss_dssp             CCCEEEEESCSEEETTCCEEEEEECST-TC-SEEEEEETTTCCEE-------------------------------SSSE
T ss_pred             CCCeEEeCCCccccCCCcEEEEEeCCC-CC-CEEEEEECCccccC-------------------------------cccE
Confidence            455566556556689999999999987 44 79999998764110                               1267


Q ss_pred             EEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceE
Q psy14542        176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK  255 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~  255 (371)
                      |.|.+++.+| +|.|+|.+.|. .+....+. ...+.|..  ...+|.+...+ ... +..|+.++|.|.+.+.+ +.+.
T Consensus        54 L~i~~v~~~D-~G~Y~C~a~n~-~g~~~~s~-~~~l~V~~--~~~~p~i~~~p-~~~-v~~G~~v~l~C~~~~~~-~~~~  125 (184)
T 2gi7_A           54 LFIPAMKRSL-AGRYRCSYQNG-SLWSLPSD-QLELVATG--VFAKPSLSAQP-GPA-VSSGGDVTLQCQTRYGF-DQFA  125 (184)
T ss_dssp             EEESSCCGGG-CEEEEEEEEET-TEEBCCCC-CEEEEEES--SSCCCEEEEEC-CCS-SCCTTCEEEEEECSSCC-CEEE
T ss_pred             EEECcCChhh-CceEEEEEEcC-CCccCCCC-CEEEEecC--cCCCCEEEeCC-Cce-ecCCCcEEEEEEcCCCC-cEEE
Confidence            9999999999 99999999987 44322221 11455532  11355555544 334 88999999999987654 6999


Q ss_pred             EEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        256 WYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       256 W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      |+++|..+.........++.|.|.++..+|+|.|+|.|.|..+.
T Consensus       126 w~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~  169 (184)
T 2gi7_A          126 LYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFSSRDP  169 (184)
T ss_dssp             EEECCCCTTSCCCCEEEEESSSEEEETTCCSEEEEEEEECTTST
T ss_pred             EEECCCcCcceecCCCceEEEEEccCCccCCeEEEEEEEeCCCC
Confidence            99999887654444455678999999999999999999998653

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.90  E-value=8.6e-23  Score=163.37  Aligned_cols=190  Identities=14%  Similarity=0.209  Sum_probs=131.7

Q ss_pred             eeecCCcEEEEEEecCCCC---CceEEEeeCCEEeeeCCeeEEEEcc-cCcCC-CeeEEEEEeCCceeEe------ccce
Q psy14542        107 VVDVGHRIELHCRVSPKRL---SSAKAWLKDGLVLRRNSDEVLVLDR-VQRED-AGMYQCHIEDGKYHML------SSGE  175 (371)
Q Consensus       107 ~~~~g~~v~l~C~~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~-~g~y~~~~~~~~~~~~------~~~~  175 (371)
                      .+.+|++++|.|.+.+.+.   .+.+.|++++..........+...+ ..... ...|     .++..+.      .+..
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~r~~~~~~~~~~~~~~   85 (214)
T 3jz7_A           11 EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDL-----KGRVHFTSNDVKSGDAS   85 (214)
T ss_dssp             EEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGG-----TTTEEESCSCGGGTBCC
T ss_pred             EEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCcc-----ccceEEeccCccCCccc
Confidence            3489999999999987663   2699999854211000000000000 00000 0000     1233332      2467


Q ss_pred             EEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEe-ecCCCCce
Q psy14542        176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSA-QGNPLPTI  254 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v  254 (371)
                      |.|.+++.+| +|.|+|.+.+. .+......   .|.|.     .+|.+........ +..|+.+.|.|.+ .+.|.+.+
T Consensus        86 L~i~~v~~~D-~G~Y~C~~~~~-~~~~~~~~---~l~V~-----~~p~~~~~~~~~~-~~~g~~v~l~C~~~~g~p~~~v  154 (214)
T 3jz7_A           86 INVTNLQLSD-IGTYQCKVKKA-PGVANKKF---LLTVL-----VKPSGTRCFVDGS-EEIGNDFKLKCEPKEGSLPLQF  154 (214)
T ss_dssp             EEECSCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEE-----CCCBSCEEEEESC-CBTTCCEEEEEECSBCCSSCEE
T ss_pred             EEEccCChhh-CeEEEEEEEeC-CCccccEE---EEEEE-----cCCCCceeeeecc-eecCCcEEEEecCCCCCCCCEE
Confidence            9999999999 99999999988 66666666   78887     5565555554545 8899999999999 78999999


Q ss_pred             EEEeCCc--ccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCc
Q psy14542        255 KWYKQDS--PVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGK  312 (371)
Q Consensus       255 ~W~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p  312 (371)
                      .|++++.  .+.........++.|.|.++..+|+|.|+|.|.|..|....++.|.|..||
T Consensus       155 ~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P~  214 (214)
T 3jz7_A          155 EWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPPS  214 (214)
T ss_dssp             EEEECSTTCCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBCCC
T ss_pred             EEEECCCCCccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeCCC
Confidence            9999543  343333333446789999999999999999999999999999999888554

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.90  E-value=2.1e-22  Score=158.66  Aligned_cols=168  Identities=19%  Similarity=0.311  Sum_probs=130.1

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------C--------eeEEEEccCCcCCC
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------S--------DEVLVLDRVQREDA   71 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~--------~~~l~i~~~~~~d~   71 (371)
                      +|.+...|.. ..+.+|++++|.|.+..+.|.+.+.|++++..+...          .        ...|.|.+++.+|+
T Consensus         2 ~~~~~~~p~~-~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   80 (195)
T 2c5d_C            2 ESPFVGNPGN-ITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDT   80 (195)
T ss_dssp             CCSEEECCCC-EEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTC
T ss_pred             CCeeccChhh-eEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCC
Confidence            5678888888 999999999999966536788899999999887643          1        46899999999999


Q ss_pred             eEEEEEEEcCCCCeE-EEEEEEEecceeeEecCCc-eeeecCCcEEEEEEecCCCCCc-eEEEeeCCEEeeeCCeeEEEE
Q psy14542         72 GMYQCHVSADDDSAQ-MSAQVILGGELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSS-AKAWLKDGLVLRRNSDEVLVL  148 (371)
Q Consensus        72 G~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~  148 (371)
                      |.|+|.+.+..+... ..+.|.|. .+|.+...+. ..+.+|+.+.|.|.+.+.|. + .+.|++++..+......    
T Consensus        81 G~Y~C~~~~~~~~~~~~~~~l~V~-~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~~v~W~~~~~~~~~~~~~----  154 (195)
T 2c5d_C           81 GQYQCLVFLGHQTFVSQPGYVGLE-GLPYFLEEPEDRTVAANTPFNLSCQAQGPPE-PVDLLWLQDAVPLATAPGH----  154 (195)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEC-CSCEEEECCCCEEECTTCCEEEEEEEECSSC-CCEEEEEESSCBSSSSTTS----
T ss_pred             cEEEEEEEeCCCceecccEEEEEe-cCCeEEcCCCcEEEcCCCEEEEEeECCCCCC-CCEEEEEECCEeccCCCCc----
Confidence            999999998765543 33788887 4555555444 34488999999999999887 6 99999999877654210    


Q ss_pred             cccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceee-eeeccceeee
Q psy14542        149 DRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASL-LSVNRGRLSL  213 (371)
Q Consensus       149 ~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~-~~~~~~~l~v  213 (371)
                                            ..+..|.|.+++  | +|.|+|.+.|. .|... ...   .|.|
T Consensus       155 ----------------------~~~~~L~i~~~~--d-~G~Y~C~a~N~-~g~~~s~~~---~l~V  191 (195)
T 2c5d_C          155 ----------------------GPQRSLHVPGLN--K-TSSFSCEAHNA-KGVTTSRTA---TITV  191 (195)
T ss_dssp             ----------------------SCCEEEEECCCS--S-CEEEEEEEEET-TEEEECCCE---EEEE
T ss_pred             ----------------------CCCCeEEEcccc--c-CceEEEEEEcC-CCceEEEEE---EEEE
Confidence                                  122578888887  7 99999999998 66553 444   5555

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.90  E-value=1.3e-22  Score=162.11  Aligned_cols=180  Identities=18%  Similarity=0.252  Sum_probs=128.1

Q ss_pred             eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCC
Q psy14542        106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESD  185 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d  185 (371)
                      ..+.+|+.+.|.|.+.+.+. +.+.|++++..+....   ..-.......         ..++... ...|.|.+++.+|
T Consensus        11 ~~v~~G~~v~L~C~~~~~p~-~~v~W~~~~~~~~~~~---~~~~~~~~~~---------~~r~~~~-~~~L~i~~v~~~D   76 (212)
T 1f97_A           11 VQVPENESIKLTCTYSGFSS-PRVEWKFVQGSTTALV---CYNSQITAPY---------ADRVTFS-SSGITFSSVTRKD   76 (212)
T ss_dssp             EEEETTCCEEEECEEESCSS-EEEEEEEEETTEEEEE---EETTEECGGG---------TTTEEEE-TTEEEESCCCGGG
T ss_pred             eEEEcCCCEEEEeEeCCCCC-cEEEEEECCCceeeEE---ecCCcccccc---------cCcEEee-ceeEEEcccCccc
Confidence            34489999999999998776 8999999775432110   0000000000         1233333 2789999999999


Q ss_pred             ccceeEEEeeccccc--eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEE-eecCCCCceEEEeCCc-
Q psy14542        186 RYRSYQCRGVNKLTG--ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCS-AQGNPLPTIKWYKQDS-  261 (371)
Q Consensus       186 ~~g~y~C~~~~~~~~--~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~-~~~~p~~~v~W~~~~~-  261 (371)
                       .|.|+|.+.+. .+  ......   .|.|.     .+|.+........ +..|+.+.|.|. +.+.|.+.+.|++++. 
T Consensus        77 -~G~Y~C~~~~~-~g~~~~~~~~---~l~V~-----~~p~~~~~~~~~~-~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~  145 (212)
T 1f97_A           77 -NGEYTCMVSEE-GGQNYGEVSI---HLTVL-----VPPSKPTISVPSS-VTIGNRAVLTCSEHDGSPPSEYSWFKDGIS  145 (212)
T ss_dssp             -CEEEEEEEEET-TSSSEEEEEE---EEEEE-----BCCCCCEEECCSE-EETTSCEEEEEECSCCBSCCEEEEEETTEE
T ss_pred             -CeEEEEEEEcc-CCCcccEEEE---EEEEE-----cCCCCcccCCccc-cCCCCeEEEEEEcccCcCCCEEEEEeCCcc
Confidence             99999999987 55  333344   66676     5565555444455 899999999999 7889999999999998 


Q ss_pred             ccccCCc---------eE--EecceEEEeccCCCCCeEEEEEEEcCCCCc--eeEEEEEEec
Q psy14542        262 PVEESDR---------IQ--RIGSSLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQYAH  310 (371)
Q Consensus       262 ~~~~~~~---------~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~  310 (371)
                      .+.....         +.  ...+.|.|.++..+|+|.|+|.|.|..|..  +..+.|.|.+
T Consensus       146 ~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          146 MLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             SBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             cccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence            7765432         22  235689999999999999999999999988  5667776654

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.89  E-value=5.2e-22  Score=156.95  Aligned_cols=168  Identities=20%  Similarity=0.252  Sum_probs=118.3

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC------CEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD------GLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDS   84 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   84 (371)
                      +++.+.|...+.+.+|++++|.|.+ .+.|.+.+.|+++      +..........|.|.+++.+|+|.|+|.+.|..+.
T Consensus         1 ~~v~i~p~~~~~~~~G~~v~L~C~~-~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~   79 (202)
T 1vca_A            1 FKIETTPESRYLAQIGDSVSLTCST-TGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRK   79 (202)
T ss_dssp             CEEEEESSSEEEEETTSCEEEEEEE-ESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEE
T ss_pred             CeEEECCCCcEEEcCCCcEEEEEee-cCCCCCeEEEECCCCCCccceEEEcCCccEEEECcCCHHHCEEEEEEEEECCce
Confidence            3567778774555699999999965 5678888999983      33333335678999999999999999999998877


Q ss_pred             eEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCC--ceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEE
Q psy14542         85 AQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLS--SAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH  162 (371)
Q Consensus        85 ~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~  162 (371)
                      ....+.|.|...+..+...+...+.+|+.++|.|.+.+.++.  +.+.|++++..+.....        . .+.      
T Consensus        80 ~~~~~~l~V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~--------~-~~~------  144 (202)
T 1vca_A           80 LEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEF--------L-EDA------  144 (202)
T ss_dssp             EEEEEEEEEEBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEEC--------C-SCC------
T ss_pred             EeeEEEEEEEeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECccccc--------c-ccc------
Confidence            778888998743333332233446899999999999876432  47999999987754310        0 000      


Q ss_pred             EeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       163 ~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                        ...........|.|.....+| .|.|+|.|.|.
T Consensus       145 --~~~~~~~~~~~l~i~~~~~d~-~g~ytC~A~n~  176 (202)
T 1vca_A          145 --DRKSLETKSLEVTFTPVIEDI-GKVLVCRAKLH  176 (202)
T ss_dssp             --SSCCCEEEEEEEEECCCGGGT-TCEEEEEEEEC
T ss_pred             --CcCcceEEEEEEEEEeeeccC-CCeEEEEEEcc
Confidence              000001112456777777777 99999999997

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.89  E-value=2.3e-22  Score=155.51  Aligned_cols=165  Identities=15%  Similarity=0.213  Sum_probs=123.7

Q ss_pred             eeeEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccce
Q psy14542         97 LVEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE  175 (371)
Q Consensus        97 ~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~  175 (371)
                      .|.+...+.. .+.+|+.++|.|.+.+.+.+..+.|++++..+...                               +..
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~-------------------------------~~~   55 (175)
T 1fnl_A            7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ-------------------------------ASS   55 (175)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS-------------------------------CSE
T ss_pred             CCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCC-------------------------------ceE
Confidence            4455555554 56899999999999888763458999999877542                               167


Q ss_pred             EEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCC-ce
Q psy14542        176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP-TI  254 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v  254 (371)
                      |.|.+++.+| +|.|+|.+.+. .+  ....   .+.|.     .++.... ..... +..|+.+.|.|.+.+.+++ .+
T Consensus        56 L~i~~~~~~d-~G~Y~C~~~n~-~~--s~~~---~l~V~-----~~~~~~~-~~~~~-~~~g~~~~l~C~~~~~~~~~~~  121 (175)
T 1fnl_A           56 YFIDAATVND-SGEYRCQTNLS-TL--SDPV---QLEVH-----IGWLLLQ-APRWV-FKEEDPIHLRCHSWKNTALHKV  121 (175)
T ss_dssp             EEESSCCGGG-CEEEEEECSSS-CC--CCCE---EEEEE-----CSSEEEE-CSCSE-EETTCCEEEEEEECTTCCCEEE
T ss_pred             EEEeCCCccc-CEEEEEEeeCC-cc--cccE---EEEEe-----CCCceee-CCCce-ecCCCCEEEEEEcCCCCCceEE
Confidence            9999999999 99999999875 33  2233   56666     2333222 22333 8899999999999887664 99


Q ss_pred             EEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCC-ceeEEEEEEec
Q psy14542        255 KWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQ-DKMQLFIQYAH  310 (371)
Q Consensus       255 ~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~  310 (371)
                      .|+++|..+...    ..++.|.|.++..+|+|.|+|.|.|..+. .+..+.|.|.+
T Consensus       122 ~W~k~g~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (175)
T 1fnl_A          122 TYLQNGKDRKYF----HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ  174 (175)
T ss_dssp             EEEETTEEEEEE----EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EEEECCeEccCC----CCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence            999999877432    34678999999999999999999997654 56667777764

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.89  E-value=2.5e-22  Score=154.59  Aligned_cols=158  Identities=14%  Similarity=0.230  Sum_probs=122.8

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCeEE
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQM   87 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   87 (371)
                      .++|.+.+.|.. ..+.+|+++.|.|.+....+.+.+.|++++..+.. ....+.+.+++.+|+|.|+|.+.+...  ..
T Consensus         2 ~p~p~i~~~p~~-~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~-~~~~~~~~~~~~~d~G~Y~C~~~~~~~--s~   77 (170)
T 3ry4_A            2 PPKAVLKLEPPW-INVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPT-HTQPSYRFKANNNDSGEYTCQTGQTSL--SD   77 (170)
T ss_dssp             CCBCEEEEESCC-SEEETTCEEEEEEESCCCSSSSCEEEEETTEECTT-CCSSEEEEECCGGGCEEEEEEETTSBC--CC
T ss_pred             CCCCEEEeCCCC-eEEECCCcEEEEEEecCCCCcceEEEEECCeEccc-CccceEEEecccccCeEEEEEEeCCCc--eE
Confidence            367889999987 78999999999996554433678999999998875 455678889999999999999986543  34


Q ss_pred             EEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCc
Q psy14542         88 SAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGK  167 (371)
Q Consensus        88 ~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~  167 (371)
                      .+.|.|. .++.+...+...+.+|+.+.|.|.+.+.++.+.+.|++++..+....                         
T Consensus        78 ~~~l~v~-~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~-------------------------  131 (170)
T 3ry4_A           78 PVHLTVL-FEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH-------------------------  131 (170)
T ss_dssp             CEEEEEE-CCSEEEECSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEES-------------------------
T ss_pred             eEEEEEE-CCceEecCCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccC-------------------------
Confidence            5677777 34444555555668999999999995443338999999998765321                         


Q ss_pred             eeEeccceEEEEEeecCCccceeEEEeeccccce
Q psy14542        168 YHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGA  201 (371)
Q Consensus       168 ~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~  201 (371)
                          .+..|.|.++..+| .|.|+|.+.|. .|.
T Consensus       132 ----~~~~L~i~~v~~~d-~G~Y~C~a~n~-~g~  159 (170)
T 3ry4_A          132 ----LDPTFSIPQANHSH-SGDYHCTGNIG-YTL  159 (170)
T ss_dssp             ----SCCEEEESSCCGGG-CEEEEEEEEET-TEE
T ss_pred             ----CCCeEEEEeccccC-CEEEEEEEEeC-cCc
Confidence                11578999999999 99999999998 553

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.89  E-value=3.3e-21  Score=174.27  Aligned_cols=260  Identities=13%  Similarity=0.186  Sum_probs=159.4

Q ss_pred             ccCcEEEEEEecCCCCCC-eeEEEeCCEEEe--------e-C----CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEE-
Q psy14542         25 VGHRIELHCRVSPKRLSS-AKAWLKDGLVLR--------R-N----SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSA-   89 (371)
Q Consensus        25 ~G~~v~l~C~~~~~~~~~-~~~W~~~~~~~~--------~-~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~-   89 (371)
                      .|+.++|.|.+....|.+ .+.|++++....        . .    ....|.|.+...+ .|.|+|.+.+..+.....+ 
T Consensus       149 ~~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~  227 (512)
T 1zvo_C          149 DNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIF  227 (512)
T ss_pred             CCCeEEEEEEEEeeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEe
Confidence            568999999766555764 899999754311        0 0    1235888887777 8999999999877654433 


Q ss_pred             ----------EEEEec---------------------------------------------------ceeeEec-CCc-e
Q psy14542         90 ----------QVILGG---------------------------------------------------ELVEIAS-SNQ-V  106 (371)
Q Consensus        90 ----------~l~v~~---------------------------------------------------~~~~~~~-~~~-~  106 (371)
                                .|.+..                                                   .+|.+.. .+. .
T Consensus       228 ~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~  307 (512)
T 1zvo_C          228 RWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQ  307 (512)
T ss_pred             cCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChH
Confidence                      233320                                                   0122211 111 1


Q ss_pred             eeecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCC
Q psy14542        107 VVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESD  185 (371)
Q Consensus       107 ~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d  185 (371)
                      .+..|+.++|.|.+.+..+ ...++|++++..+.....    .........|.|         ..  .+.|.|.....+|
T Consensus       308 ~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~----~~~~~~~~~gt~---------~~--~s~L~i~~~~~~d  372 (512)
T 1zvo_C          308 DLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVE----EGLLERHSNGSQ---------SQ--HSRLTLPRSLWNA  372 (512)
T ss_pred             HhccCCceEEEEEEeceECCCeEEEEEECCEeccCcee----ccceecCCCCeE---------EE--EEEEEEchHHhcC
Confidence            2357999999999988633 359999999987552110    001111122322         22  2679999999999


Q ss_pred             ccceeEEEeeccccceeeeeeccceeeeecch-hccccceeeeeeeeeeeecCCeEE-EEEEeecCCCC--ceEEEeCCc
Q psy14542        186 RYRSYQCRGVNKLTGASLLSVNRGRLSLTENK-RLLSAAKMFEKHRILNVKKDESVI-LPCSAQGNPLP--TIKWYKQDS  261 (371)
Q Consensus       186 ~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~-~~~~p~~~~~~~~~~~~~~g~~~~-l~C~~~~~p~~--~v~W~~~~~  261 (371)
                       .|.|+|.|.|. .+... ..   .+...... ...+|.+...+..   . .|+.+. |.|.+.|++++  .+.|+++|.
T Consensus       373 -~g~y~C~a~n~-~~~~~-~~---~~~~~~~~~~~~~p~v~~~~~~---~-~~~~~~~L~C~~~g~~P~~i~v~W~k~g~  442 (512)
T 1zvo_C          373 -GTSVTCTLNHP-SLPPQ-RL---MALREPAAQAPVKLSLNLLASS---D-PPEAASWLLCEVSGFSPPNILLMWLEDQR  442 (512)
T ss_pred             -CCeEEEEEEeC-CCCCC-ce---eEEeecCCCCCCCCEEEEEccC---c-CCCCceEEEEEEeeeCCCCcEEEEEECCe
Confidence             99999999987 44322 21   22211000 0134554433221   1 688899 99999985443  589999998


Q ss_pred             ccccCCce----E-Eec-------ceEEEeccCCCCCeEEEEEEEcCCCCc--eeEEEEEEec
Q psy14542        262 PVEESDRI----Q-RIG-------SSLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQYAH  310 (371)
Q Consensus       262 ~~~~~~~~----~-~~~-------~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~  310 (371)
                      .+......    . ..+       +.|.|.....+|.|.|+|+|.|.....  .....|.|..
T Consensus       443 ~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~~~~~~v~~  505 (512)
T 1zvo_C          443 EVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTLLNASRSLEVSY  505 (512)
T ss_pred             ECcCccccccceeECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCCceEEEEEEEecc
Confidence            87654211    1 112       246666677778999999999987653  4444455543

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.89  E-value=7.1e-23  Score=158.57  Aligned_cols=168  Identities=15%  Similarity=0.209  Sum_probs=124.6

Q ss_pred             eeeEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccce
Q psy14542         97 LVEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE  175 (371)
Q Consensus        97 ~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~  175 (371)
                      +|.+...+.. .+.+|+.++|.|.+.+.+.+..+.|++++..+...                               +..
T Consensus         4 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~-------------------------------~~~   52 (176)
T 1f2q_A            4 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET-------------------------------NSS   52 (176)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC-------------------------------SSE
T ss_pred             CCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCC-------------------------------ceE
Confidence            4444444444 56899999999999887764579999999876532                               168


Q ss_pred             EEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEee-cCCCCce
Q psy14542        176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQ-GNPLPTI  254 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v  254 (371)
                      |.|.+++.+| .|.|+|.+.+. .+.  ...   .+.|.     .++.... ..... +..|+.+.|.|.+. +.|.+.+
T Consensus        53 L~i~~v~~~d-~G~Y~C~~~~~-~~s--~~~---~l~V~-----~~~~~~~-~~~~~-~~~g~~~~l~C~~~~~~p~~~~  118 (176)
T 1f2q_A           53 LNIVNAKFED-SGEYKCQHQQV-NES--EPV---YLEVF-----SDWLLLQ-ASAEV-VMEGQPLFLRCHGWRNWDVYKV  118 (176)
T ss_dssp             EEECSCCGGG-CEEEEEECTTS-SCC--CCE---EEEEE-----CSSEEEE-ESCSE-EETTSCEEEEEEEGGGCCEEEE
T ss_pred             EEEeccceec-CEEEEEEcCCc-ccc--ccE---EEEEe-----Ccceeec-CCcce-eeCCCCEEEEEEecCCCCceEE
Confidence            9999999999 99999999876 332  223   55665     3333322 22234 88999999999995 5677899


Q ss_pred             EEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCC-CceeEEEEEEecCcc
Q psy14542        255 KWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEG-QDKMQLFIQYAHGKY  313 (371)
Q Consensus       255 ~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~v~~~p~  313 (371)
                      .|+++|..+....    .++.|.|.++..+|+|.|+|.|.|..+ ..+..+.|.|..+|.
T Consensus       119 ~W~~~g~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          119 IYYKDGEALKYWY----ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR  174 (176)
T ss_dssp             EEEETTEECCSCC----CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             EEEECCEEEeeec----CCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence            9999998775332    357899999999999999999999644 456678899988876

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.89  E-value=1.4e-22  Score=162.67  Aligned_cols=185  Identities=26%  Similarity=0.419  Sum_probs=132.2

Q ss_pred             ceeeEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCee--EEEEcccCcCCCeeEEEEEeCCceeEec
Q psy14542         96 ELVEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE--VLVLDRVQREDAGMYQCHIEDGKYHMLS  172 (371)
Q Consensus        96 ~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~g~y~~~~~~~~~~~~~  172 (371)
                      .+|.+...+.. .+.+|+.+.|.|.+.+.+. +.+.|++++..+......  .+...               ++...   
T Consensus         8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~-~~v~W~~~g~~~~~~~~~~~~~~~~---------------~~~~~---   68 (217)
T 2vr9_A            8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPE-PTIEWFKDGEPVSTNEKKSHRVQFK---------------DGALF---   68 (217)
T ss_dssp             CCCEEEECCCCEEECTTSCEEECCEEECSSC-CEEEEEETTEECCCSSSSSSEEECT---------------TSCEE---
T ss_pred             CCCEEecCCCceEEeCCCcEEEEEEcCCCCC-CeEEEEECCcCccCCCccceeEEec---------------CCceE---
Confidence            55666665544 4489999999999988776 899999999887654211  00000               00000   


Q ss_pred             cceEEEEEeecCCccceeEEEeecccccee-eeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEe-ecCC
Q psy14542        173 SGELIIHQVDESDRYRSYQCRGVNKLTGAS-LLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSA-QGNP  250 (371)
Q Consensus       173 ~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~p  250 (371)
                       ..+.|.+++..| +|.|+|.+.+. .+.. ....   .+.|..    .+|.+...+.... +..|+.+.|.|.+ .+.|
T Consensus        69 -~~l~i~~v~~~d-~G~Y~C~~~n~-~g~~~~~~~---~l~v~~----~~~~~~~~~~~~~-~~~g~~v~l~C~~~~g~p  137 (217)
T 2vr9_A           69 -FYRTMQGKKEQD-GGEYWCVAKNR-VGQAVSRHA---SLQIAV----LRDDFRVEPKDTR-VAKGETALLECGPPKGIP  137 (217)
T ss_dssp             -ESSCCBSSSCBC-CEEEEEEEEET-TEEEECCCE---EEEECE----ECCSCSBCCCCEE-ECTTSCEEECCBCCCEES
T ss_pred             -EEEEeccCCccc-CceEEEEEecC-CCccccccc---eEEEEE----eCCCcEECCCccE-EcCCCeEEEEEECCCCCC
Confidence             123678889999 99999999987 5543 2233   555552    2344444455555 8899999999998 8899


Q ss_pred             CCceEEEeCCccccc--------CCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEec
Q psy14542        251 LPTIKWYKQDSPVEE--------SDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAH  310 (371)
Q Consensus       251 ~~~v~W~~~~~~~~~--------~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  310 (371)
                      .+.+.|++++..+..        ..++. ..++.|.|.++..+|+|.|+|.|.|..|....+..+.+..
T Consensus       138 ~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~  206 (217)
T 2vr9_A          138 EPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ  206 (217)
T ss_dssp             CCEEEEEETTEEECCCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             CCeEEEEECCcCCCcccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEEE
Confidence            999999999988763        23333 3456899999999999999999999999877665555543

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.89  E-value=8.7e-23  Score=163.31  Aligned_cols=187  Identities=13%  Similarity=0.154  Sum_probs=126.2

Q ss_pred             ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccc-
Q psy14542         96 ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG-  174 (371)
Q Consensus        96 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~-  174 (371)
                      .+|.+...+...+.+|++++|.|.+.+ +. +.+.|+|++..+......                      ........ 
T Consensus         8 ~~P~i~~~p~~~v~~G~~vtL~C~~~~-~~-~~~~W~k~g~~~~~~~~~----------------------~~~~~~~~~   63 (218)
T 1uct_A            8 PMPFISAKSSPVIPLDGSVKIQCQAIR-EA-YLTQLMIIKNSTYREIGR----------------------RLKFWNETD   63 (218)
T ss_dssp             CCCCEEESSCSEEETTCCEEEEECCCT-TC-SEEEEEEEETTEEEECSE----------------------ECC----CC
T ss_pred             CCCEEEecCCCccCCCCCEEEEEEcCC-CC-CEEEEEECCCcccccccc----------------------cCCCCccee
Confidence            355666666656689999999999976 44 799999987655422100                      00001124 


Q ss_pred             -eEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCc
Q psy14542        175 -ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT  253 (371)
Q Consensus       175 -~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~  253 (371)
                       .|.|.+++.+| +|.|+|.+.+. .+....+. ...|.|..  ...+|.+...+ ... +.+|+.++|.|...+.+.+.
T Consensus        64 ~~L~I~~v~~~D-~G~Y~C~a~n~-~~~~~~s~-~~~l~V~~--~~~~P~i~~~p-~~~-v~~G~~v~L~C~~~~~~~~~  136 (218)
T 1uct_A           64 PEFVIDHMDANK-AGRYQCQYRIG-HYRFRYSD-TLELVVTG--LYGKPFLSADR-GLV-LMPGENISLTCSSAHIPFDR  136 (218)
T ss_dssp             CEEEECSCCGGG-CEEEEEEEEET-TTEEEECC-CEEEEEEC--SSCCCEEEESS-CSE-ECTTCCCEEEEECSSSCCSE
T ss_pred             eEEEEccccccc-CEEEEEEEEcC-CCceeecC-CEEEEEcC--cccCCEEEeCC-CCc-cCCCCCEEEEEeCCCCCCCE
Confidence             79999999999 99999999987 44333222 12455542  11345554444 334 89999999999766777889


Q ss_pred             eEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCC-----CceeEEEEEEecCcc
Q psy14542        254 IKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEG-----QDKMQLFIQYAHGKY  313 (371)
Q Consensus       254 v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~~p~  313 (371)
                      +.|+|+|..+.........++.|.|.++..+|+|.|+|.|.|...     ..+..+.|.|...+.
T Consensus       137 ~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~~~  201 (218)
T 1uct_A          137 FSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSIH  201 (218)
T ss_dssp             EEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC----
T ss_pred             EEEEECCCcccccccCCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecCCC
Confidence            999999987764321123457899999999999999999998642     345667788876544

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.89  E-value=7.2e-23  Score=172.05  Aligned_cols=208  Identities=16%  Similarity=0.192  Sum_probs=143.6

Q ss_pred             ceeeEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccc
Q psy14542         96 ELVEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG  174 (371)
Q Consensus        96 ~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~  174 (371)
                      .+|.+...+.. .+.+|++++|.|.+.+.     +.|++++.....     +  ..              .     ...+
T Consensus         3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~-----v~W~~~~~~~~~-----~--~~--------------~-----~~~~   51 (292)
T 4dkd_C            3 SIPVIEPSVPELVVKPGATVTLRCVGNGS-----VEWDGPPSPHWT-----L--YS--------------D-----GSSS   51 (292)
T ss_dssp             -CCEEESCCSSCEECTTCCEEEEEECSSC-----CCBCCCCCSSCE-----E--CC--------------B-----TTEE
T ss_pred             CCceecCCCCeEEEcCCCcEEEEEcCCCc-----eEEccCCCCceE-----E--ec--------------c-----CceE
Confidence            34556555543 45899999999998773     889965431100     0  00              0     0125


Q ss_pred             eEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccc-eeeeeeeeeeeecCCeEEEEEEeecCCC--
Q psy14542        175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAA-KMFEKHRILNVKKDESVILPCSAQGNPL--  251 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~-~~~~~~~~~~~~~g~~~~l~C~~~~~p~--  251 (371)
                      .|.|.+++..| +|.|+|.+.+. .+......   .|.|.     .+|. +...+.... +..|+.+.|.|.+.+ |.  
T Consensus        52 ~L~i~~~~~~d-~G~Y~C~~~n~-~~~~~~~~---~l~V~-----~~~~~~~~~~~~~~-v~~g~~v~l~C~~~~-~~~~  119 (292)
T 4dkd_C           52 ILSTNNATFQN-TGTYRCTEPGD-PLGGSAAI---HLYVK-----DPARPWNVLAQEVV-VFEDQDALLPCLLTD-PVLE  119 (292)
T ss_dssp             EEEESSCCGGG-CSCEEECCCC-----CCEEE---CCEEC-----CSSCCEEESCSEEE-EETTSCEECCEEESS-GGGG
T ss_pred             EEEEccccccc-CEEEEEEEccC-CCCcceEE---EEEEc-----CccccccccCCeEE-EcCCCcEEEeeeCCC-CCcc
Confidence            89999999999 99999999987 55555555   67777     3333 233344455 899999999999987 44  


Q ss_pred             CceEEEeC-CcccccCCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEEec----CcccccccceEEEE
Q psy14542        252 PTIKWYKQ-DSPVEESDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQYAH----GKYHMLSSGELIIH  324 (371)
Q Consensus       252 ~~v~W~~~-~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~----~p~~~~~~~~~~~~  324 (371)
                      +.+.|+++ +..+....++. ..++.|.|.++..+|+|.|+|.|.|..+.. +..+.|.|..    +|.         +.
T Consensus       120 ~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~---------i~  190 (292)
T 4dkd_C          120 AGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPA---------LT  190 (292)
T ss_dssp             SSEEEEEGGGCCCCSSCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCE---------EE
T ss_pred             eeEEEEecCCCccccCCcccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCe---------EE
Confidence            78999997 55555554444 234569999999999999999999988865 4478888886    555         43


Q ss_pred             eeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCC-ccccC
Q psy14542        325 QVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP-TIKYR  371 (371)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~  371 (371)
                        ..|..              ..+.+|+.+.|.|.+.|.|++ .+.|+
T Consensus       191 --~~~~~--------------~~~~~g~~v~l~C~~~~~~~~~~~~w~  222 (292)
T 4dkd_C          191 --LVPAE--------------LVRIRGEAAQIVCSASSVDVNFDVFLQ  222 (292)
T ss_dssp             --EESSC--------------BCCCSSSCEEEEEEEEESSSCCEEECC
T ss_pred             --ccCCc--------------eeEecCCCEEEEEEecCCCCceEEEEe
Confidence              22222              145699999999999997764 67774

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.89  E-value=3.1e-22  Score=159.93  Aligned_cols=175  Identities=14%  Similarity=0.139  Sum_probs=120.6

Q ss_pred             eeeecC--CcEEEEEEecCCCCCceEEEeeC---CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEE
Q psy14542        106 VVVDVG--HRIELHCRVSPKRLSSAKAWLKD---GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQ  180 (371)
Q Consensus       106 ~~~~~g--~~v~l~C~~~~~~~~~~v~W~~~---~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~  180 (371)
                      ..+.+|  ++++|.|.+.+ +. +.+.|+++   +..+....                        ++.......|.|.+
T Consensus        17 v~v~eG~~~~v~L~C~~~~-p~-~~v~w~~~~~~g~~~~~~~------------------------~~~~~~~~~l~I~~   70 (213)
T 2x1w_L           17 VYITENKNKTVVIPCLGSI-SN-LNVSLCARYPEKRFVPDGN------------------------RISWDSKKGFTIPS   70 (213)
T ss_dssp             EEECCSTTCEEEECCCBSS-TT-CCEEEEEETTTEEECCCSS------------------------SCEEETTTEEEEEG
T ss_pred             EEEecCCCccEEEeeccCC-CC-cEEEEEhhcCCCccccCCC------------------------cccccCCccEEEcc
Confidence            334789  99999999976 55 79999885   44443321                        22223336799999


Q ss_pred             eecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCC--CceEEEe
Q psy14542        181 VDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL--PTIKWYK  258 (371)
Q Consensus       181 ~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~  258 (371)
                      ++.+| +|.|+|.+.+. .+.. .+. ...+.|...   .+|.+...+.....+..|+.++|.|.+.|.|.  +.+.|++
T Consensus        71 v~~~D-~G~Y~C~a~n~-~~~~-~s~-~~~l~v~~~---~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~  143 (213)
T 2x1w_L           71 YMISY-AGMVFCEAKIN-DESY-QSI-MYIVVVVGY---RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEY  143 (213)
T ss_dssp             GGTTT-CSEEEEEEC-----CE-ECC-CEEEEECBC---CEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEEC
T ss_pred             CChhc-CceEEEEEEEC-CeeE-EEE-EEEEEEeCC---cccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEe
Confidence            99999 99999999885 3322 221 114444321   34445444444312899999999999998654  5799999


Q ss_pred             CCcccccCCc-e-----------EEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542        259 QDSPVEESDR-I-----------QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       259 ~~~~~~~~~~-~-----------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      ++..+..... .           ....++|.|.++..+|+|.|+|.|.|..|.....+.|.|.++|.
T Consensus       144 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~  210 (213)
T 2x1w_L          144 PSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPI  210 (213)
T ss_dssp             SCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC---
T ss_pred             cCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEecccc
Confidence            9887543211 0           12234699999999999999999999999999999999998887

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.89  E-value=2.1e-22  Score=157.64  Aligned_cols=181  Identities=11%  Similarity=0.082  Sum_probs=121.9

Q ss_pred             eeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceE
Q psy14542         97 LVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGEL  176 (371)
Q Consensus        97 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l  176 (371)
                      .|.+...+...+.+|++++|.|.+.+. . ..+.|+|++..+.....      .                ......+..|
T Consensus         4 ~P~i~~~p~~~v~~G~~v~L~C~~~~~-~-~~~~w~k~g~~~~~~~~------~----------------~~~~~~~~~L   59 (188)
T 1oll_A            4 KPFIWAEPHFMVPKEKQVTICCQGNYG-A-VEYQLHFEGSLFAVDRP------K----------------PPERINKVKF   59 (188)
T ss_dssp             CCEEEEESCSEEETTCCEEEEEECCTT-C-CEEEEEETTEEEEEECC------S----------------SCTTCCEEEE
T ss_pred             CCEEEeecCCcCCCCCCEEEEEecCCC-C-CEEEEEECCCccccccc------c----------------cCCCcceeEE
Confidence            455555555566899999999998754 3 68999999987653110      0                0001122679


Q ss_pred             EEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEE
Q psy14542        177 IIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKW  256 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W  256 (371)
                      .|.+++.+| +|.|+|.+.+. .+....+. ...|.|...  ..+|.+...+ ... +.+|+.++|.|.+.+ +.+.+.|
T Consensus        60 ~I~~v~~~D-~G~Y~C~~~~~-~~~~~~s~-~~~l~V~~~--~~~p~i~~~p-~~~-v~~G~~v~L~C~~~~-~~~~~~w  131 (188)
T 1oll_A           60 YIPDMNSRM-AGQYSCIYRVG-ELWSEPSN-LLDLVVTEM--YDTPTLSVHP-GPE-VISGEKVTFYCRLDT-ATSMFLL  131 (188)
T ss_dssp             EESSCCGGG-CEEEEEEEEET-TEECCCCC-CEEEEEESC--SCCCEEEEES-CSE-EETTCEEEEEEECSS-SCSEEEE
T ss_pred             EeCcCCccc-CeEEEEEecCC-CCCCCCCC-ceEEEeccc--CCCCeEEECC-CCc-cccCCEEEEEEEcCC-CCCEEEE
Confidence            999999999 99999999875 33222221 114555421  1355555444 334 899999999999875 4568999


Q ss_pred             EeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCC---CceeEEEEEEe
Q psy14542        257 YKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEG---QDKMQLFIQYA  309 (371)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g---~~~~~~~l~v~  309 (371)
                      +++|..+.........++.|.|.++..+|+|.|+|.|.|...   ..+..+.|.|.
T Consensus       132 ~k~g~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~  187 (188)
T 1oll_A          132 LKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT  187 (188)
T ss_dssp             EEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             EECCccccccccCCCceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence            999987654211112356899999999999999999998752   23455666654

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.89  E-value=1.5e-22  Score=159.59  Aligned_cols=181  Identities=15%  Similarity=0.150  Sum_probs=124.8

Q ss_pred             eeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceE
Q psy14542         97 LVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGEL  176 (371)
Q Consensus        97 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l  176 (371)
                      +|.+...+...+.+|++++|.|.+.+ +. +.+.|+|++..+......                      .........|
T Consensus         5 ~P~i~~~p~~~v~~G~~v~L~C~~~~-~~-~~~~w~k~g~~~~~~~~~----------------------~~~~~~~~~L   60 (196)
T 3p2t_A            5 KPTLWAEPGSVISWGNSVTIWCQGTL-EA-REYRLDKEESPAPWDRQN----------------------PLEPKNKARF   60 (196)
T ss_dssp             CCEEEEESCSEEETTCCEEEEEECCT-TC-CEEEEEETTSCSCSEEEC----------------------CCSSSSEEEE
T ss_pred             CCEEEccCCCcCCCCCcEEEEeeCCC-CC-CEEEEEECCCCCcccccc----------------------cccCCceEEE
Confidence            45566556666689999999999988 44 799999998765432100                      0000122679


Q ss_pred             EEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEE
Q psy14542        177 IIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKW  256 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W  256 (371)
                      .|.+++.+| +|.|+|.+.|. .+....+. ...|.|..  ...+|.+...+.. . +..|+.++|.|.+.+ +.+.+.|
T Consensus        61 ~i~~v~~~D-~G~Y~C~a~n~-~g~~~~s~-~~~l~V~~--~~~~p~~~~~~~~-~-v~~G~~v~L~C~~~~-~~~~~~w  132 (196)
T 3p2t_A           61 SIPSMTEDY-AGRYRCYYRSP-VGWSQPSD-PLELVMTG--AYSKPTLSALPSP-L-VTSGKSVTLLCQSRS-PMDTFLL  132 (196)
T ss_dssp             EESSCCGGG-CEEEEEEEEET-TEEBCCCC-CEEEEEEC--SSCCCEEEEESCS-E-ECTTCCEEEEEEEEE-EEEEEEE
T ss_pred             EeccCCccc-CceEEEEEeCC-CcccCCCc-cEEEEecC--CCCCCEEEeCCcc-e-ecCCCeEEEEEecCC-CCCEEEE
Confidence            999999999 99999999988 55222222 11455542  1134555544443 3 889999999999987 4468999


Q ss_pred             EeCCcccccCCce-----EEecceEEEeccCCCCCeEEEEEEEcCCC-----CceeEEEEEEe
Q psy14542        257 YKQDSPVEESDRI-----QRIGSSLSISHVEESDSGVWNCVANNSEG-----QDKMQLFIQYA  309 (371)
Q Consensus       257 ~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~  309 (371)
                      ++++..+......     ...++.|.|.++..+|+|.|+|.|.|..+     ..+..+.|.|.
T Consensus       133 ~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  195 (196)
T 3p2t_A          133 CKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIVS  195 (196)
T ss_dssp             EETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEEC
T ss_pred             EeCCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEeC
Confidence            9999876543321     13456899999999999999999999876     23445556553

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.89  E-value=1.3e-21  Score=154.73  Aligned_cols=169  Identities=12%  Similarity=0.117  Sum_probs=118.9

Q ss_pred             ecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccc
Q psy14542        109 DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYR  188 (371)
Q Consensus       109 ~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g  188 (371)
                      .+|+.++|.|.+.|.|. +.+.|++...... ...  ..                     .......|.|.+++.+| +|
T Consensus        14 ~~G~~v~L~C~~~g~P~-p~i~W~~~~~~~~-~~~--~~---------------------~~~~~~~L~I~~v~~~D-~G   67 (202)
T 1vca_A           14 QIGDSVSLTCSTTGCES-PFFSWRTQIDSPL-NGK--VT---------------------NEGTTSTLTMNPVSFGN-EH   67 (202)
T ss_dssp             ETTSCEEEEEEEESCSS-CEEEEEETTCCCC-SSE--EE---------------------EETTEEEEEESSCCGGG-CS
T ss_pred             cCCCcEEEEEeecCCCC-CeEEEECCCCCCc-cce--EE---------------------EcCCccEEEECcCCHHH-CE
Confidence            59999999999998887 7899988431100 000  00                     00012469999999999 99


Q ss_pred             eeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCC---CceEEEeCCccccc
Q psy14542        189 SYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL---PTIKWYKQDSPVEE  265 (371)
Q Consensus       189 ~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~v~W~~~~~~~~~  265 (371)
                      .|+|.+.|. .+......   .|.|.     .+|.......... +.+|+.++|.|.+.+.++   ++|.|++++..+..
T Consensus        68 ~Y~C~a~n~-~~~~~~~~---~l~V~-----~~p~~~~~~~~~~-~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~  137 (202)
T 1vca_A           68 SYLCTATCE-SRKLEKGI---QVEIY-----SFPKDPEIHLSGP-LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKS  137 (202)
T ss_dssp             EEEEEEEET-TEEEEEEE---EEEEE-----BCCSCCEEEESSC-EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEE
T ss_pred             EEEEEEEEC-CceEeeEE---EEEEE-----eCCCCCEeCCceE-EcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcc
Confidence            999999998 66655555   77777     3333222222234 899999999999987543   36999999987643


Q ss_pred             CCce--------EEecceEEEeccCCCCCeEEEEEEEcCCCC-------ceeEEEEEEecCcc
Q psy14542        266 SDRI--------QRIGSSLSISHVEESDSGVWNCVANNSEGQ-------DKMQLFIQYAHGKY  313 (371)
Q Consensus       266 ~~~~--------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-------~~~~~~l~v~~~p~  313 (371)
                      ....        ......|.|.....+|+|+|+|+|.|..|.       ...++.|.|.++|.
T Consensus       138 ~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          138 QEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             EECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred             cccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence            3211        122345678888899999999999998876       35678899998887

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.89  E-value=8.3e-23  Score=163.27  Aligned_cols=183  Identities=22%  Similarity=0.355  Sum_probs=129.9

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------Cee-----EEEEccCCcCCC
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDE-----VLVLDRVQREDA   71 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~-----~l~i~~~~~~d~   71 (371)
                      ..+|.+...|.. ..+.+|++++|.|.+ .+.|.+.+.|++++..+...           ..+     .|.|.+++.+|+
T Consensus         7 ~~pp~i~~~p~~-~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   84 (212)
T 2v9r_A            7 DFPPRIVEHPSD-LIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDE   84 (212)
T ss_dssp             CEEEEEEECCCC-EEECTTCCEEECCEE-EEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSC
T ss_pred             cCCcceecCCCc-eEEeCCCcEEEEEEc-CCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccC
Confidence            346788888887 999999999999965 55678899999999887532           122     234456799999


Q ss_pred             eEEEEEEEcCCCCe-EEEEEEEEecceeeEecCCc-eeeecCCcEEEEEEe-cCCCCCceEEEeeCCEEeeeCCeeEEEE
Q psy14542         72 GMYQCHVSADDDSA-QMSAQVILGGELVEIASSNQ-VVVDVGHRIELHCRV-SPKRLSSAKAWLKDGLVLRRNSDEVLVL  148 (371)
Q Consensus        72 G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~  148 (371)
                      |.|+|.+.+..+.. ...+.|.|...++.+...+. ..+..|+.+.|.|.+ .+.+. +.+.|++++..+.....     
T Consensus        85 G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~v~W~~~~~~l~~~~~-----  158 (212)
T 2v9r_A           85 GVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPE-PTISWKKDGSPLDDKDE-----  158 (212)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESC-CEEEEEETTEEECTTST-----
T ss_pred             eEEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCC-CEEEEEECCccCCCCcc-----
Confidence            99999999876654 34566776643444443333 345899999999998 67676 89999999998765421     


Q ss_pred             cccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeee-eeccceeeeecchhccccceeee
Q psy14542        149 DRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLL-SVNRGRLSLTENKRLLSAAKMFE  227 (371)
Q Consensus       149 ~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~-~~~~~~l~v~~~~~~~~p~~~~~  227 (371)
                                        + ....+..|.|.++..+| .|.|+|.+.|. .|.... .+   .|.|.     .+|.+...
T Consensus       159 ------------------~-~~~~~~~L~i~~~~~~d-~G~Y~C~a~N~-~g~~~s~~~---~l~V~-----~~P~~~~~  209 (212)
T 2v9r_A          159 ------------------R-ITIRGGKLMITYTRKSD-AGKYVCVGTNM-VGERESEVA---ELTVL-----ERPSFVKA  209 (212)
T ss_dssp             ------------------T-EEEETTEEEESSCCGGG-CEEEEEEEEET-TEEEECCCE---EEEEE-----C-------
T ss_pred             ------------------e-EEccCCeEEEeeCCHhh-CeeEEEEEecc-cCceecceE---EEEEE-----eCchHhhh
Confidence                              1 11223689999999999 99999999998 665433 24   77777     56665543

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.88  E-value=8e-23  Score=161.19  Aligned_cols=171  Identities=13%  Similarity=0.103  Sum_probs=109.6

Q ss_pred             ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccce
Q psy14542         96 ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE  175 (371)
Q Consensus        96 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~  175 (371)
                      .+|.+...+...+.+|++++|.|.+.+.+.  .+.|+|++..+.....      .                ......+..
T Consensus         4 ~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~--~~~W~k~g~~~~~~~~------~----------------~~~~~~~~~   59 (196)
T 2d3v_A            4 SKATLWAEPGSVISRGNSVTIRCQGTLEAQ--EYRLVKEGSPEPWDTQ------N----------------PLEPKNKAR   59 (196)
T ss_dssp             CBCEEEEESCSEEETTCCEEEEEECCTTCC--EEEEEETTCSSCSEEE------C----------------CCSSTTEEE
T ss_pred             CCCEEEeCCCCcccCCCeEEEEEeCCCCCc--EEEEEECCCCCCcccc------c----------------ccCCccccE
Confidence            355566556556689999999999987654  9999999875532110      0                000112267


Q ss_pred             EEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceE
Q psy14542        176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK  255 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~  255 (371)
                      |.|.+++.+| +|.|+|.+.+. .+....+. ...|.|...  ..+|.+...+. .. +.+|+.++|.|.+.+.| +.+.
T Consensus        60 L~i~~v~~~D-~G~Y~C~a~n~-~g~~~~s~-~~~l~V~~~--~~~p~i~~~~~-~~-v~~G~~v~L~C~~~~~p-~~~~  131 (196)
T 2d3v_A           60 FSIPSMTEHH-AGRYRCYYYSP-AGWSEPSD-PLELVVTGF--YNKPTLSALPS-PV-VTSGENVTLQCGSRLRF-DRFI  131 (196)
T ss_dssp             EEESSCCGGG-CEEEEEEEEET-TEECBCCC-CEEEEEECS--SCCCEEEC-------------CEEEEEESSCC-SEEE
T ss_pred             EEeccCChhH-CeEEEEEEeCC-CCcCCcCc-cEEEEecCC--CCCCeEEccCC-cc-ccCCCcEEEEEEcCCCC-CEEE
Confidence            9999999999 99999999887 44322221 115555531  12455544432 34 88999999999999888 8999


Q ss_pred             EEeCCcccccCCce--E----EecceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542        256 WYKQDSPVEESDRI--Q----RIGSSLSISHVEESDSGVWNCVANNSEG  298 (371)
Q Consensus       256 W~~~~~~~~~~~~~--~----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  298 (371)
                      |++++..+......  .    ...+.|.|.++..+|+|.|+|.|.|..+
T Consensus       132 W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          132 LTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             EEEC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             EEccCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence            99999876532211  1    1236899999999999999999999765

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.88  E-value=7.3e-22  Score=153.79  Aligned_cols=157  Identities=20%  Similarity=0.357  Sum_probs=120.8

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEEEE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQCHV   78 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~   78 (371)
                      +|.+...|.. ..+.+|++++|.|.+. +.|.+.+.|++++..+...           ....|.|.+++.+|+|.|+|.+
T Consensus         2 ~~~~~~~p~~-~~v~~G~~v~l~C~~~-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   79 (182)
T 1rhf_A            2 GLKLMGAPVK-LTVSQGQPVKLNCSVE-GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQV   79 (182)
T ss_dssp             -----CCCEE-EEEETTCCEEEEEEEE-SCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCcc-eEEeCCCcEEEEEEEe-CCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEE
Confidence            4566777777 8899999999999655 5778899999999877654           1368999999999999999999


Q ss_pred             EcCCCCe-EEEEEEEEecceeeEecCCc-eeeecCCcEEEEEEecCCCCCc-eEEEeeCCEEeeeCCeeEEEEcccCcCC
Q psy14542         79 SADDDSA-QMSAQVILGGELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSS-AKAWLKDGLVLRRNSDEVLVLDRVQRED  155 (371)
Q Consensus        79 ~~~~~~~-~~~~~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~  155 (371)
                      .+..+.. ...+.|.|. .+|.+...+. ..+.+|+.+.|.|.+.+.|. + .+.|++++..+.....            
T Consensus        80 ~~~~~~~~~~~~~l~V~-~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~~v~W~~~~~~~~~~~~------------  145 (182)
T 1rhf_A           80 EDGGETEISQPVWLTVE-GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPE-PVTIVWWRGTTKIGGPAP------------  145 (182)
T ss_dssp             SSCTTCEECCCEEEEEE-CSCEEEECCCCEEECTTCCEEEEEEEECSSS-CCEEEEEETTEECSCSEE------------
T ss_pred             EcCCCcEEEEEEEEEEe-cCCeEEecCcceEecCCCEEEEEeEecCCCC-CCEEEEEcCCeECCCCCC------------
Confidence            9876653 467888888 5565555444 34589999999999999887 6 9999999987754311            


Q ss_pred             CeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecccccee
Q psy14542        156 AGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS  202 (371)
Q Consensus       156 ~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~  202 (371)
                                      ....|.|.++  .| .|.|+|.+.|. .|..
T Consensus       146 ----------------~~~~L~i~~~--~d-~G~Y~C~a~N~-~g~~  172 (182)
T 1rhf_A          146 ----------------SPSVLNVTGV--TQ-STMFSCEAHNL-KGLA  172 (182)
T ss_dssp             ----------------SSEEEEECCC--SS-CEEEEEEEEET-TEEE
T ss_pred             ----------------CceEEEEecc--cc-CeEEEEEEECC-CCCc
Confidence                            2257888887  57 99999999998 6654

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.88  E-value=1.2e-22  Score=167.79  Aligned_cols=263  Identities=14%  Similarity=0.112  Sum_probs=108.3

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe--CCEEE-eeC-CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEE
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK--DGLVL-RRN-SDEVLVLDRVQREDAGMYQCHVSADDDSAQMS   88 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~--~~~~~-~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~   88 (371)
                      +.+.|+. ..+.+|++++|.|...... ...+.|.-  .+..+ ..+ ....|.|.+++.+  |.|.|.+..........
T Consensus         2 ~~v~P~~-~~V~~G~sv~l~Cs~~c~~-p~~~~~~t~l~~~~~~~~g~~~~~~~l~~v~~~--~~y~C~~~~~~~~~~~~   77 (291)
T 1mq8_A            2 TSVSPSK-VILPRGGSVLVTCSTSCDQ-PKLLGIETPLPKKELLLPGNNRKVYELSNVQED--SQPMCYSNCPDGQSTAK   77 (291)
T ss_dssp             EEEECSE-EEECTTCEEEEEEEECCSS-CSEEEEECSSCCCCCCCSCSSEEEEEEESCCSC--CCCEEEEECSSCEEEEE
T ss_pred             eEEeCCc-cEEcCCCeEEEEEeCCCCC-CccceEEecCCCcccccCCCceEEEEEEecccC--CeEEEEEEcCCccEEEE
Confidence            5677877 8999999999999765322 23488853  22222 222 3346888988843  56999998655555777


Q ss_pred             EEEEEecceeeEecCCc-eeeecCCcEEEEEEecCCCCCc--eEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeC
Q psy14542         89 AQVILGGELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSS--AKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED  165 (371)
Q Consensus        89 ~~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~  165 (371)
                      +.|.|+..|..+...+. ..+.+|+.++|.|.+.+..+..  .|+|+|++..+.....      .   .+          
T Consensus        78 v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~------~---~~----------  138 (291)
T 1mq8_A           78 TFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA------V---GE----------  138 (291)
T ss_dssp             CEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEEC------C---BT----------
T ss_pred             EEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccC------C---CC----------
Confidence            88888844443333333 3358999999999998875523  6899999987764320      0   00          


Q ss_pred             CceeEeccceEEEEEeecCCccceeEEEeecccc--ce--eeeeeccceeeeecchhccccceeee-eeeeeeeecCCeE
Q psy14542        166 GKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLT--GA--SLLSVNRGRLSLTENKRLLSAAKMFE-KHRILNVKKDESV  240 (371)
Q Consensus       166 ~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~--~~--~~~~~~~~~l~v~~~~~~~~p~~~~~-~~~~~~~~~g~~~  240 (371)
                       .    ....|.+...+.++ .+.|+|+|.+...  |.  .....+...+.|.     ++|..... ..... +.+|+.+
T Consensus       139 -~----~~~~l~~~~~~~D~-g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~-----~~P~~~~~~~~p~~-l~eG~~v  206 (291)
T 1mq8_A          139 -P----AEVTTTVLVRRDHH-GANFSCRTELDLRPQGLELFENTSAPYQLQTF-----VLPATPPQLVSPRV-LEVDTQG  206 (291)
T ss_dssp             -T----EEEEEECCCSSSCS-SCEEEEEEEEECGGGTSCEEEECCCCEECBC----------------------------
T ss_pred             -C----ceEEEEeeeeeccC-CceEEEEEEecCCccCCccccccccceEEEEE-----ecCCCCceecCCcC-ccCCCeE
Confidence             0    11345555445555 8899999998722  21  1112222367776     44322111 11123 7899999


Q ss_pred             EEEEEeecCCCC---ceEEEeCCcccccCCceEEecceEEEecc---CC--CCCeEEEEEEEcCCCCceeEEEEEEecCc
Q psy14542        241 ILPCSAQGNPLP---TIKWYKQDSPVEESDRIQRIGSSLSISHV---EE--SDSGVWNCVANNSEGQDKMQLFIQYAHGK  312 (371)
Q Consensus       241 ~l~C~~~~~p~~---~v~W~~~~~~~~~~~~~~~~~~~l~i~~~---~~--~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p  312 (371)
                      +|.|.+.|.+++   .+.|+++|+.+.....  ..++.+.+...   ..  ++.+.|+|.|.|..........|.|...|
T Consensus       207 ~l~C~~~g~~P~~~~~v~w~~~g~~l~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~~  284 (291)
T 1mq8_A          207 TVVCSLDGLFPVSEAQVHLALGDQRLNPTVT--YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP  284 (291)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEcCCCCCCcccEEEEEECCEecCceee--ecCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcCC
Confidence            999999997554   5999999998875321  12334444333   23  44678889998866555666777776643

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.88  E-value=2.5e-21  Score=151.47  Aligned_cols=157  Identities=14%  Similarity=0.172  Sum_probs=118.5

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee--------CCeeEEEEccCCcCCCeEEEEEEEc
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR--------NSDEVLVLDRVQREDAGMYQCHVSA   80 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~~~~   80 (371)
                      ++|.|...|..  .+.+|++++|.|... + +...+.|+|+|..+..        .....|.|.+++.+|+|.|+|.+.+
T Consensus         3 ~~P~i~~~p~~--~v~~G~~v~L~C~~~-~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   78 (188)
T 1oll_A            3 PKPFIWAEPHF--MVPKEKQVTICCQGN-Y-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRV   78 (188)
T ss_dssp             CCCEEEEESCS--EEETTCCEEEEEECC-T-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeecCC--cCCCCCCEEEEEecC-C-CCCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecC
Confidence            56888888886  799999999999643 3 3467999999987652        1567899999999999999999987


Q ss_pred             CCC--CeEEEEEEEEec--ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCC
Q psy14542         81 DDD--SAQMSAQVILGG--ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDA  156 (371)
Q Consensus        81 ~~~--~~~~~~~l~v~~--~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~  156 (371)
                      ..+  ..+..+.|.|..  .+|.+...+...+.+|+.++|.|.+.+. . +.+.|+|++..+....              
T Consensus        79 ~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~~-~-~~~~w~k~g~~~~~~~--------------  142 (188)
T 1oll_A           79 GELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTA-T-SMFLLLKEGRSSHVQR--------------  142 (188)
T ss_dssp             TTEECCCCCCEEEEEESCSCCCEEEEESCSEEETTCEEEEEEECSSS-C-SEEEEEEESSSCEEEE--------------
T ss_pred             CCCCCCCCCceEEEecccCCCCeEEECCCCccccCCEEEEEEEcCCC-C-CEEEEEECCccccccc--------------
Confidence            543  224556777753  2455655555556899999999998764 3 5899999886554310              


Q ss_pred             eeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        157 GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       157 g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                                 .....+..|.|.+++.+| +|.|+|.+.+.
T Consensus       143 -----------~~~~~~~~L~I~~v~~~d-~G~Y~C~a~n~  171 (188)
T 1oll_A          143 -----------GYGKVQAEFPLGPVTTAH-RGTYRCFGSYN  171 (188)
T ss_dssp             -----------EECSSEEEEEEEECCGGG-CEEEEEECEEE
T ss_pred             -----------cCCCceeEEEECCCCcCC-CcEEEEEEEcC
Confidence                       000112689999999999 99999999886

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.88  E-value=5e-22  Score=156.90  Aligned_cols=164  Identities=15%  Similarity=0.239  Sum_probs=117.1

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee--------CCeeEEEEccCCcCCCeEEEEEEE
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR--------NSDEVLVLDRVQREDAGMYQCHVS   79 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~~~   79 (371)
                      .++|.|...|..  .+.+|++++|.|.+. +.+. .+.|+|++..+..        .....|.|.+++.+|+|.|+|.+.
T Consensus         3 ~~~P~i~~~p~~--~v~~G~~v~L~C~~~-~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   78 (198)
T 1ugn_A            3 LPKPTLWAEPGS--VITQGSPVTLRCQGG-QETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYG   78 (198)
T ss_dssp             CCCCEEEEESCS--EEETTCCEEEEEECC-TTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCeEeccCCC--cccCCCcEEEEEEec-CCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEE
Confidence            357888888875  789999999999654 4444 6999999887631        156789999999999999999999


Q ss_pred             cCC-C--CeEEEEEEEEec--ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcC
Q psy14542         80 ADD-D--SAQMSAQVILGG--ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE  154 (371)
Q Consensus        80 ~~~-~--~~~~~~~l~v~~--~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  154 (371)
                      +.. +  ..+..+.|.|..  ..|.+...+...+.+|+.++|.|.+.+. . +.+.|+|++..+........ ..     
T Consensus        79 n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~-~-~~v~W~k~g~~~~~~~~~~~-~~-----  150 (198)
T 1ugn_A           79 SDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVA-F-DGFILCKEGEDEHPQCLNSQ-PH-----  150 (198)
T ss_dssp             ETTTEECCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEECSSC-C-SEEEEEEC------CEEEC---------
T ss_pred             CCCCCcccCCccEEEEEcccccCCccccCCccccCCCCcEEEEEecCCC-C-cEEEEEECCCccCCcccccc-cc-----
Confidence            876 3  335567777763  2455555454566899999999999887 4 79999999987643211000 00     


Q ss_pred             CCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       155 ~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      .         ++    .....|.|.+++.+| .|.|+|.+.|.
T Consensus       151 ~---------~~----~~~~~L~i~~v~~~D-~G~Y~C~a~n~  179 (198)
T 1ugn_A          151 A---------RG----SSRAIFSVGPVSPSR-RWWYRCYAYDS  179 (198)
T ss_dssp             ----------------CCEEEEEECCCCTTS-CEEEEEEEECT
T ss_pred             C---------CC----cceeEEEecccCccc-CeEEEEEEEeC
Confidence            0         00    012679999999999 99999999987

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.88  E-value=5.4e-22  Score=156.42  Aligned_cols=164  Identities=15%  Similarity=0.219  Sum_probs=110.3

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee--------CCeeEEEEccCCcCCCeEEEEEEE
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR--------NSDEVLVLDRVQREDAGMYQCHVS   79 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~~~   79 (371)
                      .++|.+...|..  .+.+|++++|.|.+. +.+. .+.|+|++..+..        .....|.|.+++.+|+|.|+|.+.
T Consensus         3 ~~~P~i~~~p~~--~v~~G~~v~L~C~~~-~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   78 (196)
T 2d3v_A            3 LSKATLWAEPGS--VISRGNSVTIRCQGT-LEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYY   78 (196)
T ss_dssp             CCBCEEEEESCS--EEETTCCEEEEEECC-TTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCEEEeCCCC--cccCCCeEEEEEeCC-CCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEe
Confidence            367888888875  789999999999654 4444 8999999875531        156889999999999999999998


Q ss_pred             cCCCCe--EEEEEEEEecc--eeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCC
Q psy14542         80 ADDDSA--QMSAQVILGGE--LVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRED  155 (371)
Q Consensus        80 ~~~~~~--~~~~~l~v~~~--~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~  155 (371)
                      +..+..  +..+.|.|...  +|.+...+...+.+|+.++|.|.+.+.+  +.+.|+|++..+........ ..     .
T Consensus        79 n~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~p--~~~~W~k~g~~~~~~~~~~~-~~-----~  150 (196)
T 2d3v_A           79 SPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRF--DRFILTEEGDHKLSWTLDSQ-LT-----P  150 (196)
T ss_dssp             ETTEECBCCCCEEEEEECSSCCCEEEC-----------CEEEEEESSCC--SEEEEEEC---CCEEEEECE-EC-----T
T ss_pred             CCCCcCCcCccEEEEecCCCCCCeEEccCCccccCCCcEEEEEEcCCCC--CEEEEEccCCcccccccccc-cc-----c
Confidence            865422  34567777632  4556555544568999999999998876  58999999987643211000 00     0


Q ss_pred             CeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        156 AGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       156 ~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                               ++    .....|.|.+++.+| .|.|+|.+.|.
T Consensus       151 ---------~~----~~~~~L~I~~v~~~D-~G~Y~C~a~n~  178 (196)
T 2d3v_A          151 ---------SG----QFQALFPVGPVTPSH-RWMLRCYGSRR  178 (196)
T ss_dssp             ---------TS----CEEEEEECCCCBTTB-CEEEEEEEEET
T ss_pred             ---------CC----CceeEEEeeecCccc-CeeEEEEEEcc
Confidence                     00    011579999999999 99999999987

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.88  E-value=3.1e-22  Score=158.13  Aligned_cols=182  Identities=15%  Similarity=0.130  Sum_probs=120.9

Q ss_pred             ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccce
Q psy14542         96 ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE  175 (371)
Q Consensus        96 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~  175 (371)
                      .+|.+...+...+.+|++++|.|.+.+.+.  .+.|+|++..+.....                      ..........
T Consensus         4 ~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~--~~~W~k~g~~~~~~~~----------------------~~~~~~~~~~   59 (198)
T 1ugn_A            4 PKPTLWAEPGSVITQGSPVTLRCQGGQETQ--EYRLYREKKTAPWITR----------------------IPQELVKKGQ   59 (198)
T ss_dssp             CCCEEEEESCSEEETTCCEEEEEECCTTCC--CEEEEESSSCCHHHHT----------------------SCHHHHTTTE
T ss_pred             CCCeEeccCCCcccCCCcEEEEEEecCCCc--EEEEEECCcccccccc----------------------ccccCCcccE
Confidence            345565556666689999999999988765  7999999876642110                      0000112367


Q ss_pred             EEEEEeecCCccceeEEEeecccc-ceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCce
Q psy14542        176 LIIHQVDESDRYRSYQCRGVNKLT-GASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTI  254 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~~~~~-~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v  254 (371)
                      |.|.+++..| +|.|+|.+.|. . +....+. ...|.|...  ..+|.+...+. .. +..|+.++|.|.+.+. .+.+
T Consensus        60 L~i~~v~~~D-~G~Y~C~a~n~-~~g~~~~s~-~~~l~V~~~--~~~p~i~~~~~-~~-v~~G~~v~L~C~~~~~-~~~v  131 (198)
T 1ugn_A           60 FPIPSITWEH-TGRYRCYYGSD-TAGRSESSD-PLELVVTGA--YIKPTLSAQPS-PV-VNSGGNVTLQCDSQVA-FDGF  131 (198)
T ss_dssp             EEESSCCGGG-CEEEEEEEEET-TTEECCCCC-CEEEEEECS--SCCCEEEEESC-SE-EETTCCEEEEEECSSC-CSEE
T ss_pred             EEECCCCHHH-CeEEEEEEECC-CCCcccCCc-cEEEEEccc--ccCCccccCCc-cc-cCCCCcEEEEEecCCC-CcEE
Confidence            9999999999 99999999987 4 3222121 115666531  12445444332 34 8899999999999988 7899


Q ss_pred             EEEeCCcccccCCce---EE---ecceEEEeccCCCCCeEEEEEEEcCCCC-----ceeEEEEEEe
Q psy14542        255 KWYKQDSPVEESDRI---QR---IGSSLSISHVEESDSGVWNCVANNSEGQ-----DKMQLFIQYA  309 (371)
Q Consensus       255 ~W~~~~~~~~~~~~~---~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-----~~~~~~l~v~  309 (371)
                      .|++++..+......   ..   ..+.|.|.++..+|+|.|+|.|.|..+.     .+..+.|.|.
T Consensus       132 ~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  197 (198)
T 1ugn_A          132 ILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL  197 (198)
T ss_dssp             EEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred             EEEECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence            999999876433211   11   1368999999999999999999998763     2455666654

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.88  E-value=8e-22  Score=157.05  Aligned_cols=191  Identities=17%  Similarity=0.239  Sum_probs=129.9

Q ss_pred             eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCc
Q psy14542        107 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDR  186 (371)
Q Consensus       107 ~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~  186 (371)
                      .+.+|++++|.|...+.+. ..+.|++++.......-.. ......    .........++..+..+..|.|.+++..| 
T Consensus        10 ~v~~G~~v~L~C~~~~~~~-~~v~W~~~~~~~~~~~i~~-~~~~~~----~~~~~~~~~~r~~~~~~~~L~i~~v~~~D-   82 (208)
T 3r4d_A           10 QVAEDNNVLLLVHNLPLAL-GAFAWYKGNTTAIDKEIAR-FVPNSN----MNFTGQAYSGREIIYSNGSLLFQMITMKD-   82 (208)
T ss_dssp             EEETTCCEEEEEECCCSSC-SEEEEEESSCCCGGGEEEE-EEGGGT----EEEECTTCCSSEEECTTSCEEECSCCGGG-
T ss_pred             eeecCCcEEEEEeCCCCCc-eEEEeccCCCCCccceEEE-EecCCC----ccccCccccceeEEecCCeEEEccccccC-
Confidence            4579999999999777666 8999998754322211000 000000    00000001235556666789999999999 


Q ss_pred             cceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccC
Q psy14542        187 YRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEES  266 (371)
Q Consensus       187 ~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~  266 (371)
                      +|.|+|.+.+...+......   .|.|...  ...|.+....  .. +..|+.+.|.|.+.+.| +.+.|++++..+...
T Consensus        83 ~G~Y~C~~~~~~~~~~~~~~---~l~V~~~--~~~p~i~~~~--~~-~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~  153 (208)
T 3r4d_A           83 MGVYTLDMTDENYRRTQATV---RFHVHQP--VTQPFLQVTN--TT-VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLT  153 (208)
T ss_dssp             CEEEEEEEECSSCEEEEEEE---EEEEECC--CCCCEEEESC--SS-CCTTCCEEEEEECSCTT-CEEEEEETTEECCCC
T ss_pred             CeEEEEEEEcccCceeEEEE---EEEeccC--CCCCEEecCC--ce-EeeCCCEEEEEECCCCC-CceEEEECCEeCCCC
Confidence            99999999987334444444   5666532  1224443332  23 78899999999999866 799999999998877


Q ss_pred             CceEEe--cceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEEecCcc
Q psy14542        267 DRIQRI--GSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQYAHGKY  313 (371)
Q Consensus       267 ~~~~~~--~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~p~  313 (371)
                      .++...  +++|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..++.
T Consensus       154 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~  203 (208)
T 3r4d_A          154 ERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPH  203 (208)
T ss_dssp             SSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC----
T ss_pred             CCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCc
Confidence            766643  3789999999999999999999999985 5568888877766

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.88  E-value=5.9e-22  Score=154.46  Aligned_cols=158  Identities=17%  Similarity=0.224  Sum_probs=119.9

Q ss_pred             ecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCC--C
Q psy14542          7 VKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDD--S   84 (371)
Q Consensus         7 v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~   84 (371)
                      +.++|.+.+.|..  .+.+|++++|.|.. .+ +.+.+.|+|++.... .....|.|.+++.+|+|.|+|.+.+..+  .
T Consensus         5 ~~~~P~i~~~p~~--~v~~G~~v~L~C~~-~~-~~~~~~W~k~g~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~   79 (184)
T 2gi7_A            5 PLPKPSLQALPSS--LVPLEKPVTLRCQG-PP-GVDLYRLEKLSSSRY-QDQAVLFIPAMKRSLAGRYRCSYQNGSLWSL   79 (184)
T ss_dssp             CBCCCEEEEESCS--EEETTCCEEEEEEC-ST-TCSEEEEEETTTCCE-ESSSEEEESSCCGGGCEEEEEEEEETTEEBC
T ss_pred             CCCCCeEEeCCCc--cccCCCcEEEEEeC-CC-CCCEEEEEECCcccc-CcccEEEECcCChhhCceEEEEEEcCCCccC
Confidence            4567889888885  79999999999964 34 677899999987522 2677899999999999999999998664  2


Q ss_pred             eEEEEEEEEec--ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEE
Q psy14542         85 AQMSAQVILGG--ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH  162 (371)
Q Consensus        85 ~~~~~~l~v~~--~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~  162 (371)
                      .+..+.|.|..  .+|.+...+...+.+|+.++|.|.+.+.+  +.+.|+|++..+.....                   
T Consensus        80 ~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~~~~~--~~~~w~k~g~~~~~~~~-------------------  138 (184)
T 2gi7_A           80 PSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYGF--DQFALYKEGDPAPYKNP-------------------  138 (184)
T ss_dssp             CCCCEEEEEESSSCCCEEEEECCCSSCCTTCEEEEEECSSCC--CEEEEEECCCCTTSCCC-------------------
T ss_pred             CCCCEEEEecCcCCCCEEEeCCCceecCCCcEEEEEEcCCCC--cEEEEEECCCcCcceec-------------------
Confidence            24456677742  34555555544557999999999987654  59999999876543210                   


Q ss_pred             EeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       163 ~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                            .......|.|.+++.+| .|.|+|.+.|.
T Consensus       139 ------~~~~~~~L~i~~v~~~D-~G~Y~C~a~n~  166 (184)
T 2gi7_A          139 ------ERWYRASFPIITVTAAH-SGTYRCYSFSS  166 (184)
T ss_dssp             ------CEEEEESSSEEEETTCC-SEEEEEEEECT
T ss_pred             ------CCCceEEEEEccCCccC-CeEEEEEEEeC
Confidence                  01122578899999999 99999999987

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.88  E-value=9.5e-22  Score=169.09  Aligned_cols=180  Identities=14%  Similarity=0.206  Sum_probs=115.3

Q ss_pred             CCceeeecCCcEEEEEEecCCC-CCceEEEeeC--CEEeeeCCeeEEEEcc------cCcCCCeeEEEEEeCCceeEec-
Q psy14542        103 SNQVVVDVGHRIELHCRVSPKR-LSSAKAWLKD--GLVLRRNSDEVLVLDR------VQREDAGMYQCHIEDGKYHMLS-  172 (371)
Q Consensus       103 ~~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~--~~~~~~~~~~~~~~~~------~~~~~~g~y~~~~~~~~~~~~~-  172 (371)
                      .+...+.+|+.++|.|.+.+.+ ..+.+.|+|+  +..+..    ......      .....         .+++.+.. 
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~----~~~~~~~~~~~~~~~~~---------~~R~~~~~~   73 (344)
T 1za6_B            7 SGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEW----IGYFSPGNDDFKYNERF---------KGKATLTAD   73 (344)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEE----EEEEETTTTEEEECTTT---------BTTEEEEEE
T ss_pred             CCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEE----EEEEecCCCceEECccc---------CCcEEEEEe
Confidence            3444568999999999998763 2378999986  322210    001000      00011         12333322 


Q ss_pred             ----cceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec
Q psy14542        173 ----SGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG  248 (371)
Q Consensus       173 ----~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~  248 (371)
                          ...|.|.+++.+| +|.|.|.+.+. .+......   .|.|..... .+|.+........ +..|+.+.|.|.+.|
T Consensus        74 ~~~~~~~L~I~~v~~~D-~G~Y~C~~~n~-~~~~~~~~---~l~V~~~~~-~~P~i~~~~~~~~-~~~g~~v~L~C~~~g  146 (344)
T 1za6_B           74 TSASTAYVELSSLRSED-TAVYFCTRSLN-MAYWGQGT---LVTVSSAST-KGPSVFPLAPSSK-STSGGTAALGCLVKD  146 (344)
T ss_dssp             TTTTEEEEEECSCCGGG-CEEEEEEETTT-TCEECCCE---EEEECSSCC-BCCEEEEECCSCT-TTSSSEEEEEEEEEE
T ss_pred             cCCCEEEEEECCCCccc-CEEEEEEEecC-cceecCcE---EEEEecCCC-CCCeEEEcccccc-ccCCCcEEEEEEEee
Confidence                2579999999999 99999999985 43333333   666653211 3444443333333 678999999999998


Q ss_pred             C-CC-CceEEEeCCccccc---------CCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542        249 N-PL-PTIKWYKQDSPVEE---------SDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL  304 (371)
Q Consensus       249 ~-p~-~~v~W~~~~~~~~~---------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  304 (371)
                      . |. +.+.|++++..+..         ++++ ...+.|.|..+..+| |.|+|.|.|..+......
T Consensus       147 ~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~  211 (344)
T 1za6_B          147 YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLY-SLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDK  211 (344)
T ss_dssp             EBSSCCCEEETTTTBCTTEEECCCEECTTSCE-EEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEE
T ss_pred             EECCCeEEEEecCCccCceeECCCeECCCCCE-EEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceE
Confidence            6 65 79999999876421         1111 123478999988888 999999999988754433

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.88  E-value=5.8e-21  Score=152.51  Aligned_cols=166  Identities=18%  Similarity=0.238  Sum_probs=123.1

Q ss_pred             EeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542         23 VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL   93 (371)
Q Consensus        23 ~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   93 (371)
                      ...|+.+.|.|.+....|.+.+.|++++..+...         ....|.|.+++.+|+|.|+|.+.+..+.....+.|.|
T Consensus        14 ~c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v   93 (212)
T 2r15_A           14 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG   93 (212)
T ss_dssp             EECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECH
T ss_pred             EEcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEE
Confidence            4467788888865554668899999999887654         3356999999999999999999998777666666655


Q ss_pred             ec--------------------ceeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccC
Q psy14542         94 GG--------------------ELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQ  152 (371)
Q Consensus        94 ~~--------------------~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~  152 (371)
                      ..                    .++.+...+. ..+.+|+.+.|.|.+.+.|. +.+.|++++..+.....+.+...   
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~-p~v~W~~~~~~~~~~~~~~~~~~---  169 (212)
T 2r15_A           94 QAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPP-PEVSWLKNEKALAQTDHCNLKFE---  169 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSC-CEEEEEETTEEECCCSSEEEEEE---
T ss_pred             eeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCC-ceEEEEECCeECccCCCEEEEEc---
Confidence            41                    1222333333 34489999999999999887 89999999998876543222111   


Q ss_pred             cCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542        153 REDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT  214 (371)
Q Consensus       153 ~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~  214 (371)
                                  ++     ....|.|.++...| .|.|+|.+.|. .|......   .|.|.
T Consensus       170 ------------~~-----~~~~L~i~~~~~~d-~G~Y~C~a~N~-~g~~~~~~---~l~V~  209 (212)
T 2r15_A          170 ------------AG-----RTAYFTINGVSTAD-SGKYGLVVKNK-YGSETSDF---TVSVF  209 (212)
T ss_dssp             ------------TT-----TEEEEEESSCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEE
T ss_pred             ------------CC-----CEEEEEEcCcchHH-CeEEEEEEEcC-CCcEEEEE---EEEEE
Confidence                        00     11589999999999 99999999999 77766665   66665

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.88  E-value=6e-22  Score=168.86  Aligned_cols=211  Identities=15%  Similarity=0.180  Sum_probs=131.8

Q ss_pred             CcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCcccee
Q psy14542        112 HRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSY  190 (371)
Q Consensus       112 ~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y  190 (371)
                      +.+.|.|.+.+. |..+.|+|+++|..+...........              .++.+...  +.|.|.+...+| .|.|
T Consensus        25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~--------------~~g~~~~~--s~l~i~~~~~~d-~g~Y   87 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQ--------------EGELASTQ--SELTLSQKHWLS-DRTY   87 (323)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEE--------------ETTEEEEE--EEEEEEHHHHHT-TCCE
T ss_pred             CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCc--------------cCCcEEEE--EEEEEcHHHcCC-CCcE
Confidence            699999999886 33379999999998765422111110              02222222  568888888888 9999


Q ss_pred             EEEeeccccceeeeeeccceeeeecchhccccce-eeeeeeeeeeecCCeEEEEEEeecC-CCC---ceEEEeCC-cccc
Q psy14542        191 QCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAK-MFEKHRILNVKKDESVILPCSAQGN-PLP---TIKWYKQD-SPVE  264 (371)
Q Consensus       191 ~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~-~~~~~~~~~~~~g~~~~l~C~~~~~-p~~---~v~W~~~~-~~~~  264 (371)
                      +|.+.+. .+......   .+.+.  .....|.+ ...+.... +..|+.+.|.|.+.+. |.+   .+.|++++ ..+.
T Consensus        88 ~C~a~n~-~~~~~~~~---~~~~~--~~~~~p~v~~~~p~~~~-v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~  160 (323)
T 2wqr_A           88 TCQVTYQ-GHTFEDST---KKCAD--SNPRGVSAYLSRPSPFD-LFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVN  160 (323)
T ss_dssp             EEEEEET-TEEEEEEE---CCCCC--SSGGGCEEEECCCCHHH-HHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCC
T ss_pred             EEEEEeC-CCCcceee---ecCCC--CCCCCCEEEEcCCCHHH-hccCCeEEEEEEEeccCCCCCceEEEEEECCCcccc
Confidence            9999987 55443332   21111  00022322 22333333 7789999999999885 556   89999975 4433


Q ss_pred             cCCceE--------EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe----cCcccccccceEEEEeeeecccc
Q psy14542        265 ESDRIQ--------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA----HGKYHMLSSGELIIHQVDEKNKR  332 (371)
Q Consensus       265 ~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~----~~p~~~~~~~~~~~~~~~~~~~~  332 (371)
                      ......        ...+.|.|.++..+|+|.|+|.|.|..+.......+.+.    .+|.         +. +..+.. 
T Consensus       161 ~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~---------v~-~~~~~~-  229 (323)
T 2wqr_A          161 HSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPE---------VY-AFATPE-  229 (323)
T ss_dssp             CCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCE---------EE-EEECCC-
T ss_pred             cccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCE---------EE-EeCCCh-
Confidence            221111        133479999999999999999999987554434444322    3444         33 122111 


Q ss_pred             ccccccccccceeeeeecCCeEEEeeeeecCCC-C-ccccC
Q psy14542        333 LLSAAKMFEKHRILNVKKDESVILPCSAQGNPL-P-TIKYR  371 (371)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p-~i~W~  371 (371)
                                    ....|+.++|.|.+.|+++ + .|+|+
T Consensus       230 --------------~~~~g~~~~l~C~~~g~~p~~~~v~W~  256 (323)
T 2wqr_A          230 --------------WPGSRDKRTLACLIQNFMPEDISVQWL  256 (323)
T ss_dssp             --------------CTTCTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             --------------HHhcCCcEEEEEEeeeeeCCCcEEEEE
Confidence                          1123999999999999544 3 79995

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.88  E-value=5.7e-22  Score=159.01  Aligned_cols=178  Identities=22%  Similarity=0.349  Sum_probs=130.5

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEE----EEccCCcCCCeEE
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVL----VLDRVQREDAGMY   74 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l----~i~~~~~~d~G~Y   74 (371)
                      ..+|.+...|.. ..+.+|+++.|.|.+ .+.|.+.+.|++++..+...         ....+    .|.+++.+|+|.|
T Consensus         7 ~~~P~i~~~p~~-~~v~~G~~v~L~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y   84 (217)
T 2vr9_A            7 YQSPRIIEHPTD-LVVKKNEPATLNCKV-EGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEY   84 (217)
T ss_dssp             CCCCEEEECCCC-EEECTTSCEEECCEE-ECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEE
T ss_pred             cCCCEEecCCCc-eEEeCCCcEEEEEEc-CCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceE
Confidence            457888888888 999999999999965 56678899999999887653         11222    6888999999999


Q ss_pred             EEEEEcCCCCe-EEEEEEEEecceeeEecCCc-eeeecCCcEEEEEEe-cCCCCCceEEEeeCCEEeeeCCeeEEEEccc
Q psy14542         75 QCHVSADDDSA-QMSAQVILGGELVEIASSNQ-VVVDVGHRIELHCRV-SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRV  151 (371)
Q Consensus        75 ~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~  151 (371)
                      +|.+.+..+.. ...+.|.|...++.+...+. ..+..|+.+.|.|.+ .+.|. +.+.|++++..+.........    
T Consensus        85 ~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~-~~v~W~~~g~~~~~~~~~~~~----  159 (217)
T 2vr9_A           85 WCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPE-PTLIWIKDGVPLDDLKAMSFG----  159 (217)
T ss_dssp             EEEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESC-CEEEEEETTEEECCCCCC-------
T ss_pred             EEEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCC-CeEEEEECCcCCCcccccccc----
Confidence            99999877654 23456666533444444333 345899999999999 67666 899999999988743211100    


Q ss_pred             CcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeee
Q psy14542        152 QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSV  206 (371)
Q Consensus       152 ~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~  206 (371)
                                  ...++....++.|.|.++..+| .|.|+|.+.|. .|....+.
T Consensus       160 ------------~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~N~-~G~~~~~~  200 (217)
T 2vr9_A          160 ------------ASSRVRIVDGGNLLISNVEPID-EGNYKCIAQNL-VGTRESSY  200 (217)
T ss_dssp             ------------CCCSEEEETTTEEEESSCCSTT-CEEEEEEEEET-TEEEECCC
T ss_pred             ------------cCCcEEecCCCcEEEeeCCHHH-CeEEEEEEEcc-cceecccc
Confidence                        0223444455789999999999 99999999999 77655544

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.88  E-value=1.2e-21  Score=164.40  Aligned_cols=201  Identities=14%  Similarity=0.239  Sum_probs=126.0

Q ss_pred             eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCC
Q psy14542        106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESD  185 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d  185 (371)
                      ..+.+|++++|.|.+.+.     ++|++++..+...    ....     .         ++.+    .+.|.|.+++.+|
T Consensus        10 ~~v~~G~~v~L~C~~~~~-----v~W~~~~~~~~~~----~~~~-----~---------~~~~----~~~L~i~~~~~~D   62 (289)
T 3mjg_X           10 LVLNVSSTFVLTCSGSAP-----VVWERMSQEPPQE----MAKA-----Q---------DGTF----SSVLTLTNLTGLD   62 (289)
T ss_dssp             EECCTTCCEEEEEEESSC-----CEEEBTTBCCSEE----EEEC-----T---------TSCE----EEEEEECSCCGGG
T ss_pred             EEEeCCCcEEEEEeccce-----EEEECCCCCcccc----eecc-----C---------CCce----eEEEEEccCChhh
Confidence            344899999999999863     9999998876321    1000     0         0111    1579999999999


Q ss_pred             ccceeEEEeeccccce-eeeeeccceeeeecchhccccceeeeee--eeeeeecCCeEEEEEEeecCCCCceEEEeCCcc
Q psy14542        186 RYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKRLLSAAKMFEKH--RILNVKKDESVILPCSAQGNPLPTIKWYKQDSP  262 (371)
Q Consensus       186 ~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~~~~p~~~~~~~--~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~  262 (371)
                       +|.|+|.+.|. .|. ...+.   .+.|....+ ..+.+.....  ... +..|+.+.|.|.+. .|.+.++|++++..
T Consensus        63 -~G~Y~C~a~n~-~g~~~~~~~---~~~v~v~~p-~~~~~~~~~~~~~~~-v~~G~~v~l~C~~~-~p~~~v~w~~~~~~  134 (289)
T 3mjg_X           63 -TGEYFCTHNDS-RGLETDERK---RLYIFVPDP-TVGFLPNDAEELFIF-LTEITEITIPCRVT-DPQLVVTLHEKKGD  134 (289)
T ss_dssp             -CEEEEEECCC-------CCCE---EEEEECCCT-TCCBCCCCHHHHEEE-ESSCCCEEECCCBS-CTTSCEEEEESSCC
T ss_pred             -CEEEEEEEccc-CCCCcCcEE---eEEEEEECC-CcCcccCCCCcceEE-eecCCeEEEEeEcC-CCCceEEEEeCCCC
Confidence             99999999988 543 22222   334432211 1122211111  133 88999999999998 77889999987532


Q ss_pred             cccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEEec--CcccccccceEEEEeeeeccccccccccc
Q psy14542        263 VEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQYAH--GKYHMLSSGELIIHQVDEKNKRLLSAAKM  339 (371)
Q Consensus       263 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (371)
                      ......... ...+.    ...|+|.|+|.|.|..+.. +..+.|.|..  +|.         +.  ..|..        
T Consensus       135 ~~~~~~~~~-~~~~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~---------i~--~~~~~--------  190 (289)
T 3mjg_X          135 VALPVPYDH-QRGFS----GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSIN---------VS--VNAVQ--------  190 (289)
T ss_dssp             SCCCCCEET-TTEEE----ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCC---------CE--EEESC--------
T ss_pred             CccceeecC-CcCee----eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCC---------cE--EeCCc--------
Confidence            221111111 11121    3579999999999877654 4445666665  333         22  11111        


Q ss_pred             cccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        340 FEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       340 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                            ..+.+|+.+.|.|.+.|.|.|.++|+
T Consensus       191 ------~~v~~G~~v~L~C~~~g~p~p~v~W~  216 (289)
T 3mjg_X          191 ------TVVRQGENITLMCIVIGNEVVNFEWT  216 (289)
T ss_dssp             ------SEEETTSCEEEEEEEESCSSBEEEEE
T ss_pred             ------ceeEcCCCEEEEEEECCCCCcceEEE
Confidence                  26889999999999999999999995

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.87  E-value=2.1e-21  Score=153.02  Aligned_cols=164  Identities=12%  Similarity=0.171  Sum_probs=122.8

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee--------CCeeEEEEccCCcCCCeEEEEEEEc
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR--------NSDEVLVLDRVQREDAGMYQCHVSA   80 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~~~~   80 (371)
                      ++|.+...|..  .+.+|++++|.|.+. + +.+.+.|+|++..+..        .....|.|.+++.+|+|.|+|.+.|
T Consensus         4 ~~P~i~~~p~~--~v~~G~~v~L~C~~~-~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (196)
T 3p2t_A            4 PKPTLWAEPGS--VISWGNSVTIWCQGT-L-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRS   79 (196)
T ss_dssp             CCCEEEEESCS--EEETTCCEEEEEECC-T-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEccCCC--cCCCCCcEEEEeeCC-C-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeC
Confidence            57888888876  789999999999644 3 5678999998876542        1568899999999999999999998


Q ss_pred             CCC--CeEEEEEEEEec--ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCC
Q psy14542         81 DDD--SAQMSAQVILGG--ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDA  156 (371)
Q Consensus        81 ~~~--~~~~~~~l~v~~--~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~  156 (371)
                      ..+  ..+..+.|.|..  .++.+...+...+.+|+.++|.|.+.+. + ..+.|++++..+........          
T Consensus        80 ~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~-~-~~~~w~k~g~~~~~~~~~~~----------  147 (196)
T 3p2t_A           80 PVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRSP-M-DTFLLCKERAAHPLLCLRSE----------  147 (196)
T ss_dssp             TTEEBCCCCCEEEEEECSSCCCEEEEESCSEECTTCCEEEEEEEEEE-E-EEEEEEETTCCCGGGSEEEE----------
T ss_pred             CCcccCCCccEEEEecCCCCCCEEEeCCcceecCCCeEEEEEecCCC-C-CEEEEEeCCCcccceeeccc----------
Confidence            876  335556777753  3455555555566899999999999874 3 58999999876643321100          


Q ss_pred             eeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccc
Q psy14542        157 GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTG  200 (371)
Q Consensus       157 g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~  200 (371)
                                .........|.|.+++.+| .|.|+|.+.|. .+
T Consensus       148 ----------~~~~~~~~~L~i~~v~~~d-~G~Y~C~a~n~-~~  179 (196)
T 3p2t_A          148 ----------HGAQQHQAEFPMSPVTSVH-GGTYRCFSSHG-FS  179 (196)
T ss_dssp             ----------EEEEEEEEEEEECSCCGGG-CEEEEEEEECG-GG
T ss_pred             ----------ccccCcceEEEeCCCcccC-CCeEEEEEEcC-CC
Confidence                      0011123679999999999 99999999998 44

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.87  E-value=7.6e-22  Score=157.85  Aligned_cols=159  Identities=16%  Similarity=0.217  Sum_probs=118.4

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee--------CCee--EEEEccCCcCCCeEEEEE
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR--------NSDE--VLVLDRVQREDAGMYQCH   77 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~--------~~~~--~l~i~~~~~~d~G~Y~C~   77 (371)
                      .++|.|...|..  .+.+|++++|.|.+. + +.+.|.|+|+|..+..        ....  .|.|.+++.+|+|.|+|.
T Consensus         7 ~~~P~i~~~p~~--~v~~G~~vtL~C~~~-~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   82 (218)
T 1uct_A            7 FPMPFISAKSSP--VIPLDGSVKIQCQAI-R-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQ   82 (218)
T ss_dssp             SCCCCEEESSCS--EEETTCCEEEEECCC-T-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEE
T ss_pred             CCCCEEEecCCC--ccCCCCCEEEEEEcC-C-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEE
Confidence            467889888874  789999999999543 3 5778999998765431        1344  899999999999999999


Q ss_pred             EEcCCCCe--EEEEEEEEec--ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCc
Q psy14542         78 VSADDDSA--QMSAQVILGG--ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQR  153 (371)
Q Consensus        78 ~~~~~~~~--~~~~~l~v~~--~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~  153 (371)
                      +.+..+..  +..+.|.|.+  .+|.+...+...+.+|+.++|.|...+.+. +.+.|+|+|..+....           
T Consensus        83 a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~-~~~~W~k~g~~~~~~~-----------  150 (218)
T 1uct_A           83 YRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPF-DRFSLAKEGELSLPQH-----------  150 (218)
T ss_dssp             EEETTTEEEECCCEEEEEECSSCCCEEEESSCSEECTTCCCEEEEECSSSCC-SEEEEEETTCSSCCSE-----------
T ss_pred             EEcCCCceeecCCEEEEEcCcccCCEEEeCCCCccCCCCCEEEEEeCCCCCC-CEEEEEECCCcccccc-----------
Confidence            99875422  3446777763  345565555556689999999997766665 7999999987554310           


Q ss_pred             CCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        154 EDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       154 ~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                                    .....+..|.|.+++.+| +|.|+|.+.+.
T Consensus       151 --------------~~~~~~~~L~I~~v~~~D-~G~Y~C~a~n~  179 (218)
T 1uct_A          151 --------------QSGEHPANFSLGPVDLNV-SGIYRCYGWYN  179 (218)
T ss_dssp             --------------EECSSSEEEECCSCCGGG-CEEEEEEEECT
T ss_pred             --------------cCCCccCEEEEccCCccc-CEEEEEEEEcC
Confidence                          000122679999999999 99999999875

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.87  E-value=2.7e-22  Score=159.86  Aligned_cols=181  Identities=18%  Similarity=0.274  Sum_probs=125.7

Q ss_pred             eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCC
Q psy14542        106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESD  185 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d  185 (371)
                      ..+.+|+.+.|.|.+.+.+. +.+.|++++..+......   -.......         .++..... ..|.|.+++.+|
T Consensus        14 ~~v~~G~~v~L~C~~~~~p~-~~v~W~~~~~~~~~~~~~---~~~~~~~~---------~~r~~~~~-~~L~i~~~~~~d   79 (209)
T 1nbq_A           14 VRIPENNPVKLSCAYSGFSS-PRVEWKFDQGDTTRLVCY---NNKITASY---------EDRVTFLP-TGITFKSVTRED   79 (209)
T ss_dssp             CCEETTCCCEEECEEESCSS-EEEEEEEEETTEEEESEE---TTEECTTT---------TTTCEEET-TEEECSCCCTTS
T ss_pred             eEEEcCCCEEEEEEEeCCCC-cEEEEEEcCCceeEEEEe---cCccCccc---------cCceEeec-cEEEEeeCCHHH
Confidence            34489999999999998776 899999976543211000   00000000         12333332 789999999999


Q ss_pred             ccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEe-ecCCCCceEEEeCCcccc
Q psy14542        186 RYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSA-QGNPLPTIKWYKQDSPVE  264 (371)
Q Consensus       186 ~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~  264 (371)
                       .|.|+|.+.+. .+....+. ...+.|.     .+|.+........ +..|+.+.|.|.+ .+.|.+.+.|++++..+.
T Consensus        80 -~G~Y~C~~~~~-~g~~~~~~-~~~l~V~-----~~p~~~~~~~~~~-~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~  150 (209)
T 1nbq_A           80 -TGTYTCMVSEE-GGNSYGEV-KVKLIVL-----VPPSKPTVNIPSS-ATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMP  150 (209)
T ss_dssp             -CSEEEEEEEET-TSSCEECC-EEECCEE-----BCCCCCCCCCBSE-EETTSCEEECCCCCSCBSCCEEEEEETTCCCC
T ss_pred             -CcEEEEEEecC-CCCccceE-EEEEEEe-----cCCcCCCcccccc-eecCCEEEEEEeCCCCCCCceeEEEECCeeCC
Confidence             99999999987 44222221 1155665     4555444444444 8899999999997 889999999999998876


Q ss_pred             cCCce---------E--EecceEEEeccCCCCCeEEEEEEEcCCCCc--eeEEEEEEe
Q psy14542        265 ESDRI---------Q--RIGSSLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQYA  309 (371)
Q Consensus       265 ~~~~~---------~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~  309 (371)
                      ...+.         .  ...+.|.|.++..+|+|.|+|.|.|..|..  +..+.|.|.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~  208 (209)
T 1nbq_A          151 TNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV  208 (209)
T ss_dssp             SCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred             CccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEEe
Confidence            54321         1  135689999999999999999999999998  445555553

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.87  E-value=1.2e-21  Score=158.56  Aligned_cols=183  Identities=18%  Similarity=0.282  Sum_probs=132.7

Q ss_pred             cceEEEeC----CCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEE
Q psy14542         10 SLSIEMSP----SGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQ   75 (371)
Q Consensus        10 ~~~~~~~p----~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~   75 (371)
                      +|.+...+    .. ..+.+|+++.|.|.+ .+.|.+.+.|++++..+...          ...+|.|.+++.+|+|.|+
T Consensus        15 ~P~~~~~~~~~~~~-~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~   92 (231)
T 3ojm_B           15 APYWTNTEKMEKRL-HAVPAANTVKFRCPA-GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT   92 (231)
T ss_dssp             EEEESCGGGGCCSC-EEEETTSCEEEECCE-EEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEE
T ss_pred             CCccccccccCcee-EEEccCCCEEEEEec-ccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEE
Confidence            45554444    45 889999999999954 45678899999999987643          3347999999999999999


Q ss_pred             EEEEcCCCCeEEEEEEEEecc---eeeEec--CCceeeecCCcEEEEEEecCCCCCceEEEee----CCEEeeeCCeeEE
Q psy14542         76 CHVSADDDSAQMSAQVILGGE---LVEIAS--SNQVVVDVGHRIELHCRVSPKRLSSAKAWLK----DGLVLRRNSDEVL  146 (371)
Q Consensus        76 C~~~~~~~~~~~~~~l~v~~~---~~~~~~--~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~----~~~~~~~~~~~~~  146 (371)
                      |.+.+..+.....+.|.|...   ++.+..  .....+..|+.+.|.|.+.+.+. +.+.|++    ++..+........
T Consensus        93 C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-p~v~W~~~~~~~g~~~~~~~~~~~  171 (231)
T 3ojm_B           93 CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQ-PHIQWIKHVEKNGSKYGPDGLPYL  171 (231)
T ss_dssp             EEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSC-CEEEEEEECCBTTBSBCTTSCBCE
T ss_pred             EEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCC-CEEEEEECCCCCCccccCCCcceE
Confidence            999998887777888888732   223332  22344589999999999998887 7999999    6665543321111


Q ss_pred             EEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542        147 VLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT  214 (371)
Q Consensus       147 ~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~  214 (371)
                      ....              ...........|.|.++...| .|.|+|.+.|. .|......   .|.|.
T Consensus       172 ~~~~--------------~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V~  220 (231)
T 3ojm_B          172 KVLK--------------HSGINSSNAEVLALFNVTEAD-AGEYICKVSNY-IGQANQSA---WLTVL  220 (231)
T ss_dssp             EEEE--------------ECSTTCSCTTEEEECSCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEE
T ss_pred             eEec--------------ccccccCCccEEEEecCCHHH-CeEEEEEEEec-cceEeeEE---EEEEe
Confidence            1000              011111223579999999999 99999999999 77776666   77777

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.87  E-value=2.1e-21  Score=149.44  Aligned_cols=162  Identities=15%  Similarity=0.297  Sum_probs=120.2

Q ss_pred             eeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceE
Q psy14542         98 VEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGEL  176 (371)
Q Consensus        98 ~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l  176 (371)
                      |.+...+. ..+.+|+.+.|.|.+.+.+....+.|++++..+....                               ..+
T Consensus         5 p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~-------------------------------~~~   53 (170)
T 3ry4_A            5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT-------------------------------QPS   53 (170)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCC-------------------------------SSE
T ss_pred             CEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCc-------------------------------cce
Confidence            34444444 3468999999999999886447999999998776431                               456


Q ss_pred             EEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEee-cCCCCceE
Q psy14542        177 IIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQ-GNPLPTIK  255 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~  255 (371)
                      .+.+++..| .|.|+|.+.+. ..  ....   .+.|.     .++.+.. ..... +..|+.+.|.|.+. +.|.+.+.
T Consensus        54 ~~~~~~~~d-~G~Y~C~~~~~-~~--s~~~---~l~v~-----~~~~~~~-~~~~~-~~~g~~~~l~C~~~~~~p~~~~~  119 (170)
T 3ry4_A           54 YRFKANNND-SGEYTCQTGQT-SL--SDPV---HLTVL-----FEWLVLQ-TPHLE-FQEGETIMLRCHSWKDKPLVKVT  119 (170)
T ss_dssp             EEEECCGGG-CEEEEEEETTS-BC--CCCE---EEEEE-----CCSEEEE-CSCSE-ECTTCCEEEEEEEGGGCCEEEEE
T ss_pred             EEEeccccc-CeEEEEEEeCC-Cc--eEeE---EEEEE-----CCceEec-CCCce-eecCCeEEEEEECCCCCCCceEE
Confidence            778899999 99999999875 32  2233   66666     3333332 22334 78999999999995 56668999


Q ss_pred             EEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCC-ceeEEEEEE
Q psy14542        256 WYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQ-DKMQLFIQY  308 (371)
Q Consensus       256 W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v  308 (371)
                      |++++..+....    .++.|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus       120 W~~~g~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          120 FFQNGKSQKFSH----LDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             EEETTEEEEEES----SCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEECCeEccccC----CCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence            999998765322    3568999999999999999999999986 455666665

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.87  E-value=1.3e-21  Score=160.04  Aligned_cols=220  Identities=12%  Similarity=0.093  Sum_probs=124.2

Q ss_pred             ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccce
Q psy14542         96 ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE  175 (371)
Q Consensus        96 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~  175 (371)
                      .+|.+...+...+.+|++++|.|.+... . ..+.|+|++..+.....    ....                .....+..
T Consensus         6 ~kP~i~~~P~~~V~~G~~VtL~C~~~~~-~-~~~~W~k~g~~~~~~~~----~~~~----------------~~~~~~~~   63 (257)
T 1b6u_A            6 RKPSLLAHPGPLVKSEETVILQCWSDVR-F-QHFLLHREGKFKDTLHL----IGEH----------------HDGVSKAN   63 (257)
T ss_dssp             CCCEECCBSCSEEESSCCEEEEEEESSC-C-SEEEEEEESTTCEEEEE----ECBC----------------CTTCEEEE
T ss_pred             CCCEEEEcCCCEecCCCCEEEEEecCCC-C-cEEEEEECCCCCCccee----eeec----------------cCCCceEE
Confidence            4566766666666899999999999753 3 68999998864432100    0000                00012267


Q ss_pred             EEEEEeecCCccceeEEEeeccccc--eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCc
Q psy14542        176 LIIHQVDESDRYRSYQCRGVNKLTG--ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT  253 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~~~~~~--~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~  253 (371)
                      |.|.+++.+| +|.|+|.+.+...+  ....+. ...|.|...  ..+|.+...+. .. +.+|+.++|.|.+.+.+ +.
T Consensus        64 L~I~~v~~~D-sG~Y~C~a~~~~~~~~~s~~S~-~~~L~V~~~--~~~P~l~~~p~-~~-V~~G~~vtL~C~~~~~~-~~  136 (257)
T 1b6u_A           64 FSIGPMMQDL-AGTYRCYGSVTHSPYQLSAPSD-PLDIVITGL--YEKPSLSAQPG-PT-VLAGESVTLSCSSRSSY-DM  136 (257)
T ss_dssp             EEECSCCTTT-CEEEEEEEECSSCTTSCCCCCC-CEEEEEECS--SCCCEEECSSC-TT-CBTTCEEEEEEECSSCC-SE
T ss_pred             EEeecCCccc-CEEEEEeEeccCCCccccccCC-CEEEecccC--CCCcceEccCC-Cc-cCCCCEEEEEEeCCCCC-cE
Confidence            9999999999 99999999754111  111111 114555531  13455554444 23 89999999999988654 68


Q ss_pred             eEEEeCCcccccCCceE-----EecceEEEeccCCCCCeEEEEEEEcCCC-----CceeEEEEEEecCcccccccceEEE
Q psy14542        254 IKWYKQDSPVEESDRIQ-----RIGSSLSISHVEESDSGVWNCVANNSEG-----QDKMQLFIQYAHGKYHMLSSGELII  323 (371)
Q Consensus       254 v~W~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~~p~~~~~~~~~~~  323 (371)
                      |.|+|+|..+....+..     ..++.|.|.++.  |+|.|+|.|.|...     ..+..+.|.|..+|.         +
T Consensus       137 ~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~---------~  205 (257)
T 1b6u_A          137 YHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPS---------N  205 (257)
T ss_dssp             EEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-----------
T ss_pred             EEEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCC---------C
Confidence            99999998765432111     125689999998  99999999997632     345668888888877         2


Q ss_pred             EeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542        324 HQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR  371 (371)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~  371 (371)
                      .   .|...            ......|..+.|.|.+ |.+.+.|.|.
T Consensus       206 ~---~p~~~------------~~~~~~g~~~~l~~~~-~~~~~~~~~~  237 (257)
T 1b6u_A          206 S---WPSPT------------EPSSETGNPRHLHAAA-EQKLISEEDL  237 (257)
T ss_dssp             ------------------------------------------------
T ss_pred             C---CCCCc------------ccCccCCCeEEEEEEE-cchHHHHHHh
Confidence            2   11111            1134568889998765 5666677763

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.87  E-value=4.8e-21  Score=149.37  Aligned_cols=169  Identities=18%  Similarity=0.266  Sum_probs=122.8

Q ss_pred             eeecCCcEEEEEEecCCCCCceEEEeeCCEE--eeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec------cceEEE
Q psy14542        107 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLV--LRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS------SGELII  178 (371)
Q Consensus       107 ~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~--~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~------~~~l~i  178 (371)
                      .+.+|++++|.|.+.+.+. +.+.|++++..  +...... .....  ...         .+++....      ...|.|
T Consensus         6 ~~~~G~~v~L~C~~~~~~~-~~i~W~~~~~~~~~~~~~~~-~~~~~--~~~---------~~r~~~~~~~~~~~~~~L~i   72 (184)
T 2ny1_B            6 LGKKGDTVELTCTASQKKS-IQFHWKNSNQIKILGNQGSF-LTKGP--SKL---------NDRADSRRSLWDQGNFPLII   72 (184)
T ss_dssp             EEETTSCEEECCBCSSSSC-CCEEEEETTCCEEEEEETTE-EEECS--CTT---------GGGEECCGGGGGGTBCCEEE
T ss_pred             EEeCCCCEEEEEEEcCCCc-eEEEEEeCCccceEEecCce-EecCC--hhh---------CCccccccccccCCeEEEEE
Confidence            4489999999999987776 89999998863  2211111 11000  000         11222221      245999


Q ss_pred             EEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEe
Q psy14542        179 HQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYK  258 (371)
Q Consensus       179 ~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~  258 (371)
                      .+++.+| +|.|+|.+.+. .+    ..   .+.|..     .   .. +.... +..|+.+.|.|.+.+.|.+.+.|++
T Consensus        73 ~~v~~~D-~G~Y~C~~~~~-~~----~~---~l~V~~-----~---~~-~~~~~-v~~g~~~~l~C~~~~~p~~~v~W~~  133 (184)
T 2ny1_B           73 KNLKIED-SDTYICEVEDQ-KE----EV---QLLVFG-----L---TA-NSDTH-LLQGQSLTLTLESPPGSSPSVQCRS  133 (184)
T ss_dssp             CSCCGGG-CEEEEEEETTE-EE----EE---EEEEEE-----E---EE-SSCSE-EETTCCEEEEEECCTTCCCEEEEEC
T ss_pred             ecCCHHH-CEEEEEEEEcC-CC----cE---EEEEEE-----e---cC-CCCce-eecCCCEEEEEEcCCCCCCEEEEEe
Confidence            9999999 99999999987 43    22   455541     1   11 12223 8899999999999999999999999


Q ss_pred             CCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542        259 QDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       259 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      ++..+      ....+.|.|.++..+|+|.|+|.|.|..+.....+.|.|...|.
T Consensus       134 ~~~~~------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~  182 (184)
T 2ny1_B          134 PRGKN------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK  182 (184)
T ss_dssp             TTSCE------EEESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC
T ss_pred             CCCcc------ccCceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCC
Confidence            87654      34567899999999999999999999999999999999988776

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.87  E-value=4e-21  Score=156.70  Aligned_cols=174  Identities=21%  Similarity=0.340  Sum_probs=127.6

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQ   90 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   90 (371)
                      +.+.+|+++.|.|.+ .+.|.+.+.|++++..+...          ...+|.|.+++.+|+|.|+|.+.+..+.....+.
T Consensus        25 ~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~  103 (241)
T 3grw_A           25 LAVPAANTVRFRCPA-AGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYT  103 (241)
T ss_dssp             EEEETTSEEEEECCE-ECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             eEEcCCCeEEEEEEe-cCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceEEEEE
Confidence            789999999999955 46678899999999887643          4458999999999999999999998887777888


Q ss_pred             EEEecc---eeeEec--CCceeeecCCcEEEEEEecCCCCCceEEEee----CCEEeeeCCeeEEEEcccCcCCCeeEEE
Q psy14542         91 VILGGE---LVEIAS--SNQVVVDVGHRIELHCRVSPKRLSSAKAWLK----DGLVLRRNSDEVLVLDRVQREDAGMYQC  161 (371)
Q Consensus        91 l~v~~~---~~~~~~--~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~----~~~~~~~~~~~~~~~~~~~~~~~g~y~~  161 (371)
                      |.|...   ++.+..  .....+.+|+.+.|.|.+.+.+. +.+.|++    ++..+...............        
T Consensus       104 l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~-p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~--------  174 (241)
T 3grw_A          104 LDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQ-PHIQWLKHVEVNGSKVGPDGTPYVTVLKSWI--------  174 (241)
T ss_dssp             EEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSC-CEEEEEEECCSSSCSSCTTTCCCEEEEEEEE--------
T ss_pred             EEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCC-CEEEEEEcccCCCcccCCCCceeeeeeeEee--------
Confidence            888632   222222  22334488999999999998887 7999999    66655443321111100000        


Q ss_pred             EEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542        162 HIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT  214 (371)
Q Consensus       162 ~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~  214 (371)
                           .........|.|.++..+| .|.|+|.+.|. .|......   .|.|.
T Consensus       175 -----~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~N~-~g~~~~~~---~l~V~  217 (241)
T 3grw_A          175 -----SESVEADVRLRLANVSERD-GGEYLCRATNF-IGVAEKAF---WLSVH  217 (241)
T ss_dssp             -----CSBSEEEEEEEECSCCGGG-CEEEEEEEECS-SCEEEEEE---EEEC-
T ss_pred             -----eeecCCceEEEECcCCccc-CcEEEEEEecC-cceEEEEE---EEEec
Confidence                 0001123679999999999 99999999998 78777776   77777

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.87  E-value=9.2e-21  Score=153.78  Aligned_cols=159  Identities=14%  Similarity=0.170  Sum_probs=120.0

Q ss_pred             ecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee--------CCeeEEEEccCCcCCCeEEEEEE
Q psy14542          7 VKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR--------NSDEVLVLDRVQREDAGMYQCHV   78 (371)
Q Consensus         7 v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~~   78 (371)
                      ..++|.|.+.|..  .+.+|++++|.|...  .+...+.|+|++..+..        .....|.|.+++.+|+|.|+|.+
T Consensus         4 ~~~kP~i~~~P~~--~v~~G~~VtL~C~~~--~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~   79 (242)
T 1p6f_A            4 TLPKPFIWAEPHF--MVPKEKQVTICCQGN--YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIY   79 (242)
T ss_dssp             CCCCCEEEEESCS--EEETTCCEEEEEECC--TTCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCCCEEEeeCCC--ccCCCCcEEEEEeeC--CCCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEE
Confidence            3567889999986  799999999999653  24567999999987642        15678999999999999999999


Q ss_pred             EcCCC--CeEEEEEEEEec--ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcC
Q psy14542         79 SADDD--SAQMSAQVILGG--ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE  154 (371)
Q Consensus        79 ~~~~~--~~~~~~~l~v~~--~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  154 (371)
                      .+..+  ..+..+.|.|.+  ..|.+...+...+.+|++++|.|.+.+.+  ..+.|+|+|..+....    .       
T Consensus        80 ~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~~~~~~--~~~~w~k~g~~~~~~~----~-------  146 (242)
T 1p6f_A           80 RVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTAT--SMFLLLKEGRSSHVQR----G-------  146 (242)
T ss_dssp             EETTEECCCCCCEEEEEECCSCCCEEEEESCSEEETTCEEEEEEECTTSC--SEEEEEECSSSCEEEE----E-------
T ss_pred             ecCCccccCCcceEEEeecccCCCceEccCCCccCCCCcEEEEEecCCCC--CEEEEEECCCccCccc----c-------
Confidence            87532  234556777763  24556555555668999999999987653  5999999987554310    0       


Q ss_pred             CCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       155 ~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                                    ....+..|.|.+++.+| +|.|+|.+.+.
T Consensus       147 --------------~~~~~~~l~I~~v~~~d-~G~Y~C~a~n~  174 (242)
T 1p6f_A          147 --------------YGKVQAEFPLGPVTTAH-RGTYRCFGSYN  174 (242)
T ss_dssp             --------------ECSSEEEEEEEECCGGG-CEEEEEEEEEE
T ss_pred             --------------CCCceEEEEeCCCcccc-CEEEEEEEECC
Confidence                          00112689999999999 99999999886

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.87  E-value=1.6e-21  Score=155.75  Aligned_cols=172  Identities=24%  Similarity=0.340  Sum_probs=121.1

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee----------C-------CeeEEEEccCCcCCCeE
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR----------N-------SDEVLVLDRVQREDAGM   73 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~----------~-------~~~~l~i~~~~~~d~G~   73 (371)
                      +.+...|.. +.+.+|+++.|.|.+. +.|.+.+.|++++..+..          .       ...+|.|.+++.+|+|.
T Consensus         2 ~~v~~~~~~-~~v~~G~~v~L~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~   79 (212)
T 1f97_A            2 GSVYTAQSD-VQVPENESIKLTCTYS-GFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGE   79 (212)
T ss_dssp             CEEECSCSE-EEEETTCCEEEECEEE-SCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEE
T ss_pred             ceEEecCCC-eEEEcCCCEEEEeEeC-CCCCcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeE
Confidence            456666666 8899999999999654 567889999997654211          0       33789999999999999


Q ss_pred             EEEEEEcCCC--CeEEEEEEEEecceeeEecCCceeeecCCcEEEEEE-ecCCCCCceEEEeeCCE-EeeeCCeeEEEEc
Q psy14542         74 YQCHVSADDD--SAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCR-VSPKRLSSAKAWLKDGL-VLRRNSDEVLVLD  149 (371)
Q Consensus        74 Y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~-~~~~~~~~~v~W~~~~~-~~~~~~~~~~~~~  149 (371)
                      |+|.+.+..+  .....+.|.|...+..........+.+|+.+.|.|. +.+.|. +.+.|++++. .+........   
T Consensus        80 Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~i~W~~~~~~~l~~~~~~~~---  155 (212)
T 1f97_A           80 YTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPP-SEYSWFKDGISMLTADAKKTR---  155 (212)
T ss_dssp             EEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSC-CEEEEEETTEESBC-----CB---
T ss_pred             EEEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCC-CEEEEEeCCcccccccccccc---
Confidence            9999998766  346677888873332222222344589999999999 577676 8999999998 6654321100   


Q ss_pred             ccCcCCCeeEEEEEeCCceeE-eccceEEEEEeecCCccceeEEEeecccccee
Q psy14542        150 RVQREDAGMYQCHIEDGKYHM-LSSGELIIHQVDESDRYRSYQCRGVNKLTGAS  202 (371)
Q Consensus       150 ~~~~~~~g~y~~~~~~~~~~~-~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~  202 (371)
                         ...         +.++.. .....|.|.++..+| .|.|+|.+.|. .|..
T Consensus       156 ---~~~---------~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~  195 (212)
T 1f97_A          156 ---AFM---------NSSFTIDPKSGDLIFDPVTAFD-SGEYYCQAQNG-YGTA  195 (212)
T ss_dssp             ---SCS---------SSCEEECTTTCCEEESSCCGGG-CEEEEEEEECS-SSCC
T ss_pred             ---ccc---------CceeEecCCCceEEEEecChhh-CcEEEEEEccc-cCCc
Confidence               000         011111 123689999999999 99999999999 6665

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.86  E-value=6.9e-21  Score=155.69  Aligned_cols=217  Identities=14%  Similarity=0.161  Sum_probs=121.7

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee----------CCeeEEEEccCCcCCCeEEEEE
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR----------NSDEVLVLDRVQREDAGMYQCH   77 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~----------~~~~~l~i~~~~~~d~G~Y~C~   77 (371)
                      .++|.|...|..  .+.+|++++|.|...  .+...|.|+|+|..+..          .....|.|.+++.+|+|.|+|.
T Consensus         5 ~~kP~i~~~P~~--~V~~G~~VtL~C~~~--~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   80 (257)
T 1b6u_A            5 HRKPSLLAHPGP--LVKSEETVILQCWSD--VRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCY   80 (257)
T ss_dssp             CCCCEECCBSCS--EEESSCCEEEEEEES--SCCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEE
T ss_pred             CCCCEEEEcCCC--EecCCCCEEEEEecC--CCCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEe
Confidence            467888888864  789999999999754  34678999998753321          1467899999999999999999


Q ss_pred             EEcCCC-----CeEEEEEEEEec--ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcc
Q psy14542         78 VSADDD-----SAQMSAQVILGG--ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDR  150 (371)
Q Consensus        78 ~~~~~~-----~~~~~~~l~v~~--~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~  150 (371)
                      +.+...     ..+..+.|.|.+  ..|.+...+...+.+|++++|.|.+.+.+  ..+.|+|++..+.......     
T Consensus        81 a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~~~V~~G~~vtL~C~~~~~~--~~~~w~k~g~~~~~~~~~~-----  153 (257)
T 1b6u_A           81 GSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRSSY--DMYHLSREGEAHERRFSAG-----  153 (257)
T ss_dssp             EECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSCTTCBTTCEEEEEEECSSCC--SEEEEEETTSSCEECCBCB-----
T ss_pred             EeccCCCccccccCCCEEEecccCCCCcceEccCCCccCCCCEEEEEEeCCCCC--cEEEEEECCcccCcccccc-----
Confidence            985421     234556777763  34566655555568999999999998754  5899999987665432100     


Q ss_pred             cCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeee--ccceeeeecchhccccceeee-
Q psy14542        151 VQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSV--NRGRLSLTENKRLLSAAKMFE-  227 (371)
Q Consensus       151 ~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~--~~~~l~v~~~~~~~~p~~~~~-  227 (371)
                       . ...         +    ..+..|.|.+++  | +|.|+|.+.+. ......+.  ....|.|.     .+|.+... 
T Consensus       154 -~-~~~---------~----~~~~~l~I~~v~--D-~G~Y~C~a~~~-~~p~~~s~~S~pl~L~V~-----g~p~~~~p~  209 (257)
T 1b6u_A          154 -P-KVN---------G----TFQADFPLGPAT--H-GGTYRCFGSFR-DSPYEWSNSSDPLLVSVT-----GNPSNSWPS  209 (257)
T ss_dssp             -C-CSS---------S----CCBEEEEEEECC--S-CEEEEEEEECS-SCTTBBCCCCCCEEECCB-----CCC------
T ss_pred             -c-ccC---------C----ceeEEEEecccc--c-CEEEEEEEEcC-CCCcccccCCCCEEEEEe-----ccCCCCCCC
Confidence             0 000         0    012679999998  8 99999999865 22111111  11255555     34443311 


Q ss_pred             eeeeeeeecCCeEEEEEEeecCCCCceEEEeCCc
Q psy14542        228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDS  261 (371)
Q Consensus       228 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~  261 (371)
                      +.... ...|..+.|.|.+ |.+.+.+.|...+.
T Consensus       210 ~~~~~-~~~g~~~~l~~~~-~~~~~~~~~~~~~~  241 (257)
T 1b6u_A          210 PTEPS-SETGNPRHLHAAA-EQKLISEEDLNLDL  241 (257)
T ss_dssp             ----------------------------------
T ss_pred             CcccC-ccCCCeEEEEEEE-cchHHHHHHhhhhh
Confidence            11112 5668888999875 46667888976543

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.86  E-value=2.5e-21  Score=155.20  Aligned_cols=192  Identities=15%  Similarity=0.244  Sum_probs=123.5

Q ss_pred             CCceeeecCCcEEEEEEecCCCCC--ceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeE------eccc
Q psy14542        103 SNQVVVDVGHRIELHCRVSPKRLS--SAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHM------LSSG  174 (371)
Q Consensus       103 ~~~~~~~~g~~v~l~C~~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~------~~~~  174 (371)
                      +....+..|++++|.|.+.+.+.+  ..+.|+|++..+...... .....     .+........++...      ..+.
T Consensus         6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~r~~~~~~~~~~~~~   79 (218)
T 4frw_A            6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELA-LLHSK-----YGLHVSPAYEGRVEQPPPPRNPLDG   79 (218)
T ss_dssp             CSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEE-EEETT-----TEEEECGGGTTTEECCSSCCCTTBC
T ss_pred             CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEE-EecCC-----CCeEeCccccceEEEecccccCCeE
Confidence            344556899999999999887652  358999977543322100 00000     000000000112111      1235


Q ss_pred             eEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCce
Q psy14542        175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTI  254 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v  254 (371)
                      +|.|.+++.+| +|.|.|.+.+...+......   .+.+..    .++.......... +..|..+.+.|.+.+.|.|.+
T Consensus        80 sL~I~~v~~~D-~G~Y~C~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~c~~~g~p~p~i  150 (218)
T 4frw_A           80 SVLLRNAVQAD-EGEYECRVSTFPAGSFQARL---RLRVLV----PPLPSLNPGPALE-EGQGLTLAASCTAEGSPAPSV  150 (218)
T ss_dssp             CEEESSCCGGG-CEEEEEEEEEETTEEEEEEE---EEEEEB----CCCCEEEECSCEE-TTCCSEEEEEEEEEEBSCCEE
T ss_pred             EEEEeeccHHH-CCceeEEEEeccCceeeeEE---EEEEee----eccceeeeeeeee-eeeccccceeeeccCCcCceE
Confidence            79999999999 99999999876232322222   333331    1222222233333 778899999999999999999


Q ss_pred             EEEeCCcccccCCceE-----EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542        255 KWYKQDSPVEESDRIQ-----RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA  309 (371)
Q Consensus       255 ~W~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  309 (371)
                      +|++++..+.......     ...+.|.|..+..+|+|.|+|.|.|..|.....+.+.|.
T Consensus       151 ~W~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~  210 (218)
T 4frw_A          151 TWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH  210 (218)
T ss_dssp             EEEESSCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred             EEEECCcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence            9999998776554333     223579999999999999999999999988777666654

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.86  E-value=1.9e-21  Score=159.53  Aligned_cols=191  Identities=18%  Similarity=0.262  Sum_probs=120.1

Q ss_pred             ceeeecCCcEEEEEEecC---CCCCceEEEeeCCEEeeeCCeeEEEEccc-----CcC--CCeeEEE--EEeCCceeEec
Q psy14542        105 QVVVDVGHRIELHCRVSP---KRLSSAKAWLKDGLVLRRNSDEVLVLDRV-----QRE--DAGMYQC--HIEDGKYHMLS  172 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~---~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~--~~g~y~~--~~~~~~~~~~~  172 (371)
                      ...+.+|+.++|.|.+.+   .+. +.+.|++++.....   ..+.....     ...  ....+..  ....++..+..
T Consensus        11 ~v~v~~G~~v~L~C~~~~~~~~~~-~~v~W~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~   86 (250)
T 2fbo_J           11 EVEVHAGGTVELPCSYQLANDTQP-PVISWLKGASPDRS---TKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN   86 (250)
T ss_dssp             EEEECTTSCEEECCEEEECSCCSC-CEEEEEEEEETTEE---EEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC
T ss_pred             ceEEecCCeEEEEEEeEcCCCCCc-eEEEEEeCCCCCcc---EEEEeeccccccccccccccccccccCCCcCceEEecc
Confidence            344589999999999976   454 89999998643210   00000000     000  0000000  00012333322


Q ss_pred             --cceEEEEEeecCCccceeEEEeecccccee-----eeeeccceeeeecchhccccceeeeee-eeeeeecCCeEEEEE
Q psy14542        173 --SGELIIHQVDESDRYRSYQCRGVNKLTGAS-----LLSVNRGRLSLTENKRLLSAAKMFEKH-RILNVKKDESVILPC  244 (371)
Q Consensus       173 --~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~-----~~~~~~~~l~v~~~~~~~~p~~~~~~~-~~~~~~~g~~~~l~C  244 (371)
                        +..|.|.+++.+| +|.|+|.+.+. .+..     ....   .|.|....  .+|.+..... ... +..|+.+.|.|
T Consensus        87 ~~~~~L~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~~~~~---~l~V~~~~--~~~~~~~~~~~~~~-v~~g~~v~L~C  158 (250)
T 2fbo_J           87 LAAPTLRLTHVHPQD-GGRYWCQVAQW-SIRTEFGLDAKSV---VLKVTGHT--PSNNVHVSTAEVVQ-VDEGNDITMTC  158 (250)
T ss_dssp             TTSCCEEECSCCGGG-CEEEEEEEECT-TCCSGGGEEEEEE---EEEETTTS--CCSCCEECCCSEEE-CCTTCCEEECC
T ss_pred             CCcceEEEeeCChhh-CeEEEEEeccC-ccCCcccccceeE---EEEEeccC--CCCeEEEecCceEE-ecCCCcEEEEE
Confidence              3589999999999 99999999987 4422     2233   66666321  1333333222 333 77899999999


Q ss_pred             EeecCCCCceEEEeCCcccccCC------------------------ceEE-ecceEEEeccCCCCCeEEEEEEEcCCC-
Q psy14542        245 SAQGNPLPTIKWYKQDSPVEESD------------------------RIQR-IGSSLSISHVEESDSGVWNCVANNSEG-  298 (371)
Q Consensus       245 ~~~~~p~~~v~W~~~~~~~~~~~------------------------~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g-  298 (371)
                      .+.+.|.|.+.|++++..+....                        +... ..+.|.|.++..+|+|.|+|.|.|..| 
T Consensus       159 ~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~  238 (250)
T 2fbo_J          159 PCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGE  238 (250)
T ss_dssp             CEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSG
T ss_pred             EecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccc
Confidence            99999999999999988765422                        1111 336899999999999999999999655 


Q ss_pred             --CceeEEEEE
Q psy14542        299 --QDKMQLFIQ  307 (371)
Q Consensus       299 --~~~~~~~l~  307 (371)
                        ....++.|.
T Consensus       239 ~g~~~~~~~l~  249 (250)
T 2fbo_J          239 LDADRSSTILK  249 (250)
T ss_dssp             GGEEEEEEEEE
T ss_pred             cCccceeEEEe
Confidence              445555444

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.86  E-value=1.9e-21  Score=151.70  Aligned_cols=148  Identities=18%  Similarity=0.332  Sum_probs=107.3

Q ss_pred             ecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEE-eecCCcc
Q psy14542        109 DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQ-VDESDRY  187 (371)
Q Consensus       109 ~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~-~~~~d~~  187 (371)
                      ..|+.+.|.|.+.+ +.  .++|+|++..+....                              +..|.|.+ ++.+| +
T Consensus        12 ~~G~~v~L~C~~~~-~~--~i~W~k~g~~l~~~~------------------------------~~~L~I~~~~~~~D-~   57 (186)
T 1jbj_A           12 ISGTSVELTCPLDS-DE--NLKWEKNGQELPQKH------------------------------DKHLVLQDFSEVED-S   57 (186)
T ss_dssp             EETTEEEEECSSCC-CT--TCEEEETTEEECSCC------------------------------CSEEEEESCCTTTS-C
T ss_pred             eCCcEEEEEEeCCC-CC--ceEEEECCEECCCCC------------------------------CCEEEECCCCcccc-C
Confidence            68999999999987 43  599999999876531                              15799999 99999 9


Q ss_pred             ceeEEEeeccccceeeeeeccceeeeecchhcc-------------ccceeeee----eee--eeeecCCeEEEEEEeec
Q psy14542        188 RSYQCRGVNKLTGASLLSVNRGRLSLTENKRLL-------------SAAKMFEK----HRI--LNVKKDESVILPCSAQG  248 (371)
Q Consensus       188 g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~-------------~p~~~~~~----~~~--~~~~~g~~~~l~C~~~~  248 (371)
                      |.|+|.+.|. .|......   .+.|.......             +|.+....    ...  ..+..|+.+.|.|.+  
T Consensus        58 G~Y~C~a~n~-~g~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~--  131 (186)
T 1jbj_A           58 GYYVCYTPAS-NKNTYLYL---KARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL--  131 (186)
T ss_dssp             EEEEEECSSC-CCCCCEEE---CCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS--
T ss_pred             EEEEEEEEeC-CCcEEEEE---EEEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC--
Confidence            9999999998 56533333   33333211000             01110000    000  114599999999988  


Q ss_pred             CCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        249 NPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       249 ~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                       |.|.+.|+++|..+.....   .++.|.|.++..+|+|.|+|.|.|..|..
T Consensus       132 -p~p~i~W~k~g~~i~~~~~---~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          132 -TDKTIKWLKDGSIISPLNA---TKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             -SCSCEEEEETTEECCCSSC---CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             -CCCeEEEEECCEECcccCC---CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence             7899999999998865432   46789999999999999999999998876

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.86  E-value=2.2e-20  Score=145.67  Aligned_cols=161  Identities=21%  Similarity=0.437  Sum_probs=120.5

Q ss_pred             eecCCcEEEEEEecCCCCC-ceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCc
Q psy14542        108 VDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDR  186 (371)
Q Consensus       108 ~~~g~~v~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~  186 (371)
                      +.+|+.++|.|.+.+.+.+ ..+.|++++..+......                      .    ....|.|.  +.+| 
T Consensus        10 v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~----------------------~----~~~~l~i~--~~~d-   60 (184)
T 3b5h_A           10 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP----------------------G----QKTEFKVD--SDDQ-   60 (184)
T ss_dssp             EEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC----------------------C----SEEEEEEC--GGGC-
T ss_pred             EecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc----------------------C----CcEEEEEe--chhh-
Confidence            4789999999999877651 399999999887654210                      0    01345454  5788 


Q ss_pred             cceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCC-CCceEEEe---CCcc
Q psy14542        187 YRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNP-LPTIKWYK---QDSP  262 (371)
Q Consensus       187 ~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~---~~~~  262 (371)
                      .|.|+|.+.+. ..   ...   .+.|.     .+|.+...+.... +..|+.+.|.|.+.+.| .+.+.|++   ++..
T Consensus        61 ~G~Y~C~~~n~-~~---~~~---~l~V~-----~~P~~~~~~~~~~-~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~  127 (184)
T 3b5h_A           61 WGEYSCVFLPE-PM---GTA---NIQLH-----GPPRVKAVKSSEH-INEGETAMLVCKSESVPPVTDWAWYKITDSEDK  127 (184)
T ss_dssp             CEEEEEEEEST-TS---CEE---EEEEC-----CSCCCEESCSEEE-ECTTSCEEEEEECCCSSCCCEEEEEECCSSSCE
T ss_pred             CeEEEEEEECC-cC---cEE---EEEEe-----cCCceeecCCCcE-EcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCE
Confidence            99999999974 21   233   67777     6777776665555 89999999999999999 79999999   4443


Q ss_pred             -cccC--CceEEe----cceEEEeccC-CCCCeEEEEEEEcCCCCceeEEEEEEec
Q psy14542        263 -VEES--DRIQRI----GSSLSISHVE-ESDSGVWNCVANNSEGQDKMQLFIQYAH  310 (371)
Q Consensus       263 -~~~~--~~~~~~----~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  310 (371)
                       +...  .++...    ...|.|.++. .+|+|.|+|.|.|..|.....+.|.|..
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  183 (184)
T 3b5h_A          128 ALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS  183 (184)
T ss_dssp             ECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             EeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEec
Confidence             3222  344422    2379999999 9999999999999999999888888864

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.86  E-value=1.2e-21  Score=151.26  Aligned_cols=164  Identities=15%  Similarity=0.210  Sum_probs=115.2

Q ss_pred             eecCCcEEEEEEe-cCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCc
Q psy14542        108 VDVGHRIELHCRV-SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDR  186 (371)
Q Consensus       108 ~~~g~~v~l~C~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~  186 (371)
                      ..+|++++|.|.. ....+.+.+.|+|++..+......     ....         ...+++.+..++.|.|.+++.+| 
T Consensus         8 ~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~-----~~~~---------~~~~r~~~~~~gsL~I~~v~~~D-   72 (176)
T 1hng_A            8 GALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRK-----MKPF---------LKSGAFEILANGDLKIKNLTRDD-   72 (176)
T ss_dssp             EETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETT-----SCCE---------ESSTTEEECTTSCEEESSCCGGG-
T ss_pred             EEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCC-----Ceec---------CCCCeEEECCCCcEEEccccccc-
Confidence            3789999999943 222223789999998755421100     0000         01346666666789999999999 


Q ss_pred             cceeEEEeecccccee--eeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccc
Q psy14542        187 YRSYQCRGVNKLTGAS--LLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVE  264 (371)
Q Consensus       187 ~g~y~C~~~~~~~~~~--~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~  264 (371)
                      +|.|+|.+.+. .|..  ....   .|.|...  ...|.+         ...+..+.|.|.+.+.|.|.+.|+++|..+.
T Consensus        73 ~G~Y~C~~~n~-~g~~~~~~~~---~l~V~~~--~~~p~i---------~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~  137 (176)
T 1hng_A           73 SGTYNVTVYST-NGTRILNKAL---DLRILEM--VSKPMI---------YWECSNATLTCEVLEGTDVELKLYQGKEHLR  137 (176)
T ss_dssp             CEEEEEEEEET-TCCEEEEEEE---EEEEECC--CCCCEE---------EEETTTTEEEEECSSCSSCEEEEEETTEEEE
T ss_pred             CEEEEEEEEeC-CCCEEEEEEE---EEEEeCC--CCCCEE---------EecCCcEEEEEEecCCCCcEEEEEECCEECC
Confidence            99999999998 6654  3334   5666531  112222         2234568999999999999999999998876


Q ss_pred             cCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        265 ESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       265 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      .+.+       +.|..+..+|+|.|+|.|.|..|.......|.+
T Consensus       138 ~~~~-------~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~  174 (176)
T 1hng_A          138 SLRQ-------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC  174 (176)
T ss_dssp             EESS-------SEEEEECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred             CCCc-------EEEEEEEccCCeEEEEEEEecCCCceecccccC
Confidence            5443       455578899999999999999999888776654

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.86  E-value=7.1e-21  Score=154.45  Aligned_cols=186  Identities=11%  Similarity=0.070  Sum_probs=124.6

Q ss_pred             ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccce
Q psy14542         96 ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE  175 (371)
Q Consensus        96 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~  175 (371)
                      .+|.+...+...+.+|++++|.|.+.+. . ..+.|+|++..+.....      .                ......+..
T Consensus         6 ~kP~i~~~P~~~v~~G~~VtL~C~~~~~-~-~~~~w~k~g~~~~~~~~------~----------------~~~~~~~~~   61 (242)
T 1p6f_A            6 PKPFIWAEPHFMVPKEKQVTICCQGNYG-A-VEYQLHFEGSLFAVDRP------K----------------PPERINKVK   61 (242)
T ss_dssp             CCCEEEEESCSEEETTCCEEEEEECCTT-C-CEEEEEETTEEEEEECC------S----------------SCTTCCEEE
T ss_pred             CCCEEEeeCCCccCCCCcEEEEEeeCCC-C-cEEEEEECCCccccccc------c----------------ccCCcceeE
Confidence            3455555555566899999999998753 3 68999999987642110      0                000012257


Q ss_pred             EEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceE
Q psy14542        176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK  255 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~  255 (371)
                      |.|.+++.+| +|.|+|.+.+. .+....+. ...|.|...  ..+|.+...+. .. +.+|+.++|.|.+.+. .+.+.
T Consensus        62 L~I~~v~~~D-sG~Y~C~~~~~-~~~s~~S~-~~~L~V~~~--~~~P~i~~~p~-~~-v~~G~~vtL~C~~~~~-~~~~~  133 (242)
T 1p6f_A           62 FYIPDMNSRM-AGQYSCIYRVG-ELWSEPSN-LLDLVVTEM--YDTPTLSVHPG-PE-VISGEKVTFYCRLDTA-TSMFL  133 (242)
T ss_dssp             EEECSCCGGG-CEEEEEEEEET-TEECCCCC-CEEEEEECC--SCCCEEEEESC-SE-EETTCEEEEEEECTTS-CSEEE
T ss_pred             EEecCCCccc-CeEEEEEEecC-CccccCCc-ceEEEeecc--cCCCceEccCC-Cc-cCCCCcEEEEEecCCC-CCEEE
Confidence            9999999999 99999999765 33222221 114555421  13555554442 34 8999999999998754 46899


Q ss_pred             EEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCC---CCceeEEEEEEecCcc
Q psy14542        256 WYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSE---GQDKMQLFIQYAHGKY  313 (371)
Q Consensus       256 W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~---g~~~~~~~l~v~~~p~  313 (371)
                      |+|+|..+.........++.|.|.++..+|+|.|+|.+.|..   ...+..+.|.|.+.+.
T Consensus       134 w~k~g~~~~~~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~~  194 (242)
T 1p6f_A          134 LLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIE  194 (242)
T ss_dssp             EEECSSSCEEEEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC---
T ss_pred             EEECCCccCccccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEeccCC
Confidence            999998765421111234689999999999999999999864   2456678888886544

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.86  E-value=1.4e-20  Score=151.83  Aligned_cols=171  Identities=17%  Similarity=0.235  Sum_probs=108.9

Q ss_pred             CCCcEEEeccCcEEEEEEecCCCC--CCeeEEEeCCEE-----------EeeC------------------CeeEEEEcc
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKRL--SSAKAWLKDGLV-----------LRRN------------------SDEVLVLDR   65 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~~--~~~~~W~~~~~~-----------~~~~------------------~~~~l~i~~   65 (371)
                      |..++.+.+|++++|.|.+.....  ...+.|+|++..           +...                  +..+|.|.+
T Consensus        10 P~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~   89 (226)
T 4f80_A           10 PSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHN   89 (226)
T ss_dssp             CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESS
T ss_pred             CCCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEee
Confidence            455588999999999997653322  236999986531           1100                  356899999


Q ss_pred             CCcCCCeEEEEEEEcCCCCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCee
Q psy14542         66 VQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDE  144 (371)
Q Consensus        66 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~  144 (371)
                      ++.+|+|.|+|.+.|..+.....+.+.+.  ++.........+.+|+.+.|.|.+.+. |. +.++|++++..+......
T Consensus        90 v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~--~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~-p~i~W~k~~~~~~~~~~~  166 (226)
T 4f80_A           90 VTASDSGKYLCYFQDGDFYEKALVELKVA--ALGSDLHVDVKGYKDGGIHLECRSTGWYPQ-PQIQWSNNKGENIPTVEA  166 (226)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEE--BCCCCCEEEEEEEETTEEEEEEEEEEEBSC-CEEEEECTTSCBCCCEEC
T ss_pred             CchHHCeeEEEEEECCCcEEEEEEEEeec--cceecccceeeeccCCceeeEEEeccCCCC-CEEEEEECCceEcCCCce
Confidence            99999999999999977666555555544  222222223334789999999999885 55 899999965443322111


Q ss_pred             EEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542        145 VLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT  214 (371)
Q Consensus       145 ~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~  214 (371)
                      ....     ...|         .+     ..+.+..++.+| .|.|+|.|.|. .+......   .|.|.
T Consensus       167 ~~~~-----~~~g---------~~-----~v~s~l~v~~~d-~G~YtC~a~N~-~g~~~~~~---~v~v~  212 (226)
T 4f80_A          167 PVVA-----DGVG---------LY-----AVAASVIMRGSS-GEGVSCTIRSS-LLGLEKTA---SISIA  212 (226)
T ss_dssp             CCEE-----CTTS---------CE-----EEEEEEEECC-----CEEEEEEET-TTTEEEEE---EECCC
T ss_pred             EEEE-----CCCC---------cE-----EEEEEEEechhc-CcEEEEEEEeC-CCCeEEEE---EEEEC
Confidence            1100     0111         11     123455678889 99999999999 66666666   67766

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.86  E-value=3e-21  Score=152.80  Aligned_cols=171  Identities=19%  Similarity=0.251  Sum_probs=124.7

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCC-CeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADD   82 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~   82 (371)
                      +...+...+.+.+|+.+.|.|....+.|. +.+.|++++..+...         ...+|.|.+++.+|+|.|+|.+.+..
T Consensus        10 ~~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   89 (201)
T 3s97_C           10 FPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPS   89 (201)
T ss_dssp             CCSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGG
T ss_pred             cCcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecC
Confidence            34444444899999999999963566777 899999988655311         56789999999999999999999866


Q ss_pred             CCeEE---EEEEEEec------ceeeEecC-CceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccC
Q psy14542         83 DSAQM---SAQVILGG------ELVEIASS-NQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQ  152 (371)
Q Consensus        83 ~~~~~---~~~l~v~~------~~~~~~~~-~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~  152 (371)
                      +....   .+.+.+..      .+|.+... +...+..|+.++|.|.+.+.+. +.+.|++++..+.....         
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~v~W~~~~~~~~~~~~---------  159 (201)
T 3s97_C           90 ITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPV-PDIRWRKVLEPMPSTAE---------  159 (201)
T ss_dssp             GTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESC-CEEEEEETTBCCCTTCE---------
T ss_pred             CCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCC-CceEEEeCCCcCCCcee---------
Confidence            55433   23333321      23434333 3444589999999999988877 89999999986553211         


Q ss_pred             cCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542        153 REDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT  214 (371)
Q Consensus       153 ~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~  214 (371)
                                      ....+..|.|.++..+| .|.|+|.+.|. .|......   .|.|.
T Consensus       160 ----------------~~~~~~~L~i~~v~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V~  200 (201)
T 3s97_C          160 ----------------ISTSGAVLKIFNIQLED-EGIYECEAENI-RGKDKHQA---RIYVQ  200 (201)
T ss_dssp             ----------------EETTTTEEEECSCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEE
T ss_pred             ----------------ecCCCCEEEEccCChhh-CEEEEEEEEec-CCceeeeE---EEEEe
Confidence                            11123689999999999 99999999998 77766665   66654

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.86  E-value=1.6e-20  Score=144.95  Aligned_cols=146  Identities=14%  Similarity=0.155  Sum_probs=109.8

Q ss_pred             EEEeccCcEEEEEEec-CCCCCCeeEEEeCCEEEee----------C------CeeEEEEccCCcCCCeEEEEEEEcCCC
Q psy14542         21 VVVDVGHRIELHCRVS-PKRLSSAKAWLKDGLVLRR----------N------SDEVLVLDRVQREDAGMYQCHVSADDD   83 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~-~~~~~~~~~W~~~~~~~~~----------~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~   83 (371)
                      +.+.+|++++|.|... ...+.+.|.|+|++..+..          .      .+++|.|.+++.+|+|.|+|.+.+..+
T Consensus         6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g   85 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG   85 (176)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred             EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCCC
Confidence            5788999999999322 2245668999999976531          1      345699999999999999999999888


Q ss_pred             Ce--EEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEE
Q psy14542         84 SA--QMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC  161 (371)
Q Consensus        84 ~~--~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~  161 (371)
                      ..  ...+.|.|...+.    .+. ....+..+.|.|.+.+.+. +.+.|++++..+....                   
T Consensus        86 ~~~~~~~~~l~V~~~~~----~p~-i~~~~~~v~L~C~~~g~p~-p~i~W~~~g~~l~~~~-------------------  140 (176)
T 1hng_A           86 TRILNKALDLRILEMVS----KPM-IYWECSNATLTCEVLEGTD-VELKLYQGKEHLRSLR-------------------  140 (176)
T ss_dssp             CEEEEEEEEEEEECCCC----CCE-EEEETTTTEEEEECSSCSS-CEEEEEETTEEEEEES-------------------
T ss_pred             CEEEEEEEEEEEeCCCC----CCE-EEecCCcEEEEEEecCCCC-cEEEEEECCEECCCCC-------------------
Confidence            86  6677888773211    111 1134567999999999888 9999999998876532                   


Q ss_pred             EEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeee
Q psy14542        162 HIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSV  206 (371)
Q Consensus       162 ~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~  206 (371)
                                   .+.|..+..+| .|.|+|.|.|. .|......
T Consensus       141 -------------~~~i~~~~~~d-~G~Y~C~a~N~-~g~~~~~~  170 (176)
T 1hng_A          141 -------------QKTMSYQWTNL-RAPFKCKAVNR-VSQESEME  170 (176)
T ss_dssp             -------------SSEEEEECSCC-SSCEEEEEEET-TEEEEEEE
T ss_pred             -------------cEEEEEEEccC-CeEEEEEEEec-CCCceecc
Confidence                         24455788899 99999999999 66655544

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.86  E-value=4.2e-21  Score=153.50  Aligned_cols=162  Identities=16%  Similarity=0.227  Sum_probs=119.0

Q ss_pred             EEEeccCcEEEEEEecCCCC---CCeeEEEe----------------CCEEEee------C-----------CeeEEEEc
Q psy14542         21 VVVDVGHRIELHCRVSPKRL---SSAKAWLK----------------DGLVLRR------N-----------SDEVLVLD   64 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~---~~~~~W~~----------------~~~~~~~------~-----------~~~~l~i~   64 (371)
                      +.+.+|++++|.|.+.....   .+.+.|++                ++..+..      .           ...+|.|.
T Consensus        10 v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~   89 (214)
T 3jz7_A           10 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVT   89 (214)
T ss_dssp             EEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEEEC
T ss_pred             EEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEEEc
Confidence            78999999999996543322   46899988                5554431      0           35679999


Q ss_pred             cCCcCCCeEEEEEEEcCCCCeEEEEEEEEecceeeEec-CCceeeecCCcEEEEEEe-cCCCCCceEEEeeCCE--Eeee
Q psy14542         65 RVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIAS-SNQVVVDVGHRIELHCRV-SPKRLSSAKAWLKDGL--VLRR  140 (371)
Q Consensus        65 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~-~~~~~~~~g~~v~l~C~~-~~~~~~~~v~W~~~~~--~~~~  140 (371)
                      +++.+|+|.|+|.+.+..+.....+.|.|.. +|.+.. .....+.+|+.+.|.|.+ .+.|. +.+.|++++.  .+..
T Consensus        90 ~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~-~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~-~~v~W~~~~~~~~~~~  167 (214)
T 3jz7_A           90 NLQLSDIGTYQCKVKKAPGVANKKFLLTVLV-KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLP-LQFEWQKLSDSQTMPT  167 (214)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEEC-CCBSCEEEEESCCBTTCCEEEEEECSBCCSS-CEEEEEECSTTCCCCG
T ss_pred             cCChhhCeEEEEEEEeCCCccccEEEEEEEc-CCCCceeeeecceecCCcEEEEecCCCCCCC-CEEEEEECCCCCccCc
Confidence            9999999999999999888778888898883 333222 222234789999999999 67776 8999999543  2221


Q ss_pred             CCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542        141 NSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT  214 (371)
Q Consensus       141 ~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~  214 (371)
                      .                         ......+..|.|.++..+| .|.|+|.|.|. .|......   .|.|.
T Consensus       168 ~-------------------------~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~N~-~g~~~~~~---~l~V~  211 (214)
T 3jz7_A          168 P-------------------------WLAEMTSPVISVKNASSEY-SGTYSCTVQNR-VGSDQCML---RLDVV  211 (214)
T ss_dssp             G-------------------------GGGGTTSSEEEECSCCGGG-CEEEEEEEECS-SCEEEEEE---EECCB
T ss_pred             c-------------------------ceeccCCCEEEEecCCHHH-CEEEEEEEEcC-CCcEEEEE---EEEEe
Confidence            1                         1111123589999999999 99999999999 77776666   66665

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.85  E-value=4.6e-20  Score=148.38  Aligned_cols=186  Identities=13%  Similarity=0.234  Sum_probs=118.4

Q ss_pred             eeecCCcEEEEEEecCCCC----CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec------cceE
Q psy14542        107 VVDVGHRIELHCRVSPKRL----SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS------SGEL  176 (371)
Q Consensus       107 ~~~~g~~v~l~C~~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~------~~~l  176 (371)
                      .+.+|+.++|.|.+.+.+.    ...+.|++++..+.........    .......|     .++..+..      +..|
T Consensus        12 ~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~----~~~~~~~~-----~~r~~~~~~~~~~~~~~L   82 (222)
T 3sbw_C           12 VVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEED----LKVQHSSY-----RQRARLLKDQLSLGNAAL   82 (222)
T ss_dssp             EEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEEC----SSSSCGGG-----SSSEEECHHHHTTTEEEE
T ss_pred             EEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccc----cccccccc-----cCceEEccccccCCEEEE
Confidence            3479999999999876553    2589999987433221000000    00000000     12333322      2479


Q ss_pred             EEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEE
Q psy14542        177 IIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKW  256 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W  256 (371)
                      .|.+++.+| +|.|+|.+.+.  +......   .|.|.     .++.......... +..|+.+.|.|.+.|.|.|.+.|
T Consensus        83 ~I~~v~~~D-~G~Y~C~~~~~--~~~~~~~---~l~V~-----~~~~~~~~~~~~~-~~~g~~v~L~C~~~g~P~p~i~W  150 (222)
T 3sbw_C           83 QITDVKLQD-AGVYRCMISYG--GADYKRI---TVKVN-----APYNKINQRILVV-DPVTSEHELTCQAEGYPKAEVIW  150 (222)
T ss_dssp             EESSCCGGG-CEEEEEEEESS--SEEEEEE---EEEEE-----BCCCCCEEEEEEE-ETTTTEEEEEEEEEEBSCCEEEE
T ss_pred             EEcCccccc-CeEEEEEEEeC--CCceeEE---EEEEE-----CCCCCCCceeeee-ecCCCcEEEEEEecCCCCCeEEE
Confidence            999999999 99999999983  4444444   67776     3332222222123 78899999999999999999999


Q ss_pred             EeC-CcccccCCceE---EecceEE---EeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542        257 YKQ-DSPVEESDRIQ---RIGSSLS---ISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       257 ~~~-~~~~~~~~~~~---~~~~~l~---i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      +++ +..+.......   ..++.+.   +..+..+|.|.|+|.|.|..|.....+.|.|..+|.
T Consensus       151 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p~  214 (222)
T 3sbw_C          151 TSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPL  214 (222)
T ss_dssp             EETTCCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC--
T ss_pred             EECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCcc
Confidence            998 54444332221   1122222   224567899999999999999999999999987776

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.85  E-value=6e-20  Score=143.14  Aligned_cols=165  Identities=21%  Similarity=0.393  Sum_probs=115.7

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEeCCEEEeeC----CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEec
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRN----SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGG   95 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~   95 (371)
                      ..+.+|++++|.|.+... .|...+.|+|++..+...    ....|.|.  +.+|+|.|+|.+.+.   ....+.|.|. 
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~~~~~l~i~--~~~d~G~Y~C~~~n~---~~~~~~l~V~-   81 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVD--SDDQWGEYSCVFLPE---PMGTANIQLH-   81 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCSEEEEEEC--GGGCCEEEEEEEEST---TSCEEEEEEC-
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccCCcEEEEEe--chhhCeEEEEEEECC---cCcEEEEEEe-
Confidence            468899999999965433 223389999999988765    34467666  689999999999972   3356677777 


Q ss_pred             ceeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEee---CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe
Q psy14542         96 ELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLK---DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML  171 (371)
Q Consensus        96 ~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~---~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~  171 (371)
                      .+|.+...+. ..+.+|+.+.|.|.+.+.|..+.+.|++   ++..+....            ..+.|......      
T Consensus        82 ~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~------------~~~~~~~~~~~------  143 (184)
T 3b5h_A           82 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNG------------SESRFFVSSSQ------  143 (184)
T ss_dssp             CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTT------------GGGTEEEEEET------
T ss_pred             cCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecC------------CCCEEEEEecC------
Confidence            4555554443 3458999999999999988338999999   444333211            01111111100      


Q ss_pred             ccceEEEEEee-cCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542        172 SSGELIIHQVD-ESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT  214 (371)
Q Consensus       172 ~~~~l~i~~~~-~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~  214 (371)
                      ....|.|.++. ..| .|.|+|.+.|. .|......   .|.|.
T Consensus       144 ~~~~L~i~~v~~~~d-~G~Y~C~a~N~-~g~~~~~~---~l~V~  182 (184)
T 3b5h_A          144 GRSELHIENLNMEAD-PGQYRCNGTSS-KGSDQAII---TLRVR  182 (184)
T ss_dssp             TEEEEEECSCCTTTS-SEEEEEEEEET-TEEEEEEE---EEEEC
T ss_pred             CeeEEEEeecccccc-CceEEEEEEeC-CCcceEEE---EEEEe
Confidence            11479999999 899 99999999999 77766665   66664

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.85  E-value=3.1e-20  Score=147.78  Aligned_cols=157  Identities=17%  Similarity=0.235  Sum_probs=116.5

Q ss_pred             EEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee---------------C----------CeeEEEEccCCc
Q psy14542         14 EMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR---------------N----------SDEVLVLDRVQR   68 (371)
Q Consensus        14 ~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~---------------~----------~~~~l~i~~~~~   68 (371)
                      .+.|.. ..+.+|++++|.|. ..+.+...+.|++++.....               .          .+++|.|.+++.
T Consensus         3 ~i~~~~-~~v~~G~~v~L~C~-~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~   80 (208)
T 3r4d_A            3 TIEAVP-PQVAEDNNVLLLVH-NLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITM   80 (208)
T ss_dssp             EEEEES-SEEETTCCEEEEEE-CCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCG
T ss_pred             cccCcc-ceeecCCcEEEEEe-CCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccc
Confidence            344444 67999999999996 55667789999997431110               0          235799999999


Q ss_pred             CCCeEEEEEEEcCC-CCeEEEEEEEEecc--eeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeE
Q psy14542         69 EDAGMYQCHVSADD-DSAQMSAQVILGGE--LVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV  145 (371)
Q Consensus        69 ~d~G~Y~C~~~~~~-~~~~~~~~l~v~~~--~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~  145 (371)
                      +|+|.|+|.+.+.. +.....+.|.|...  .+.+...... +..|+.+.|.|.+.+.+  +.+.|++++..+.....  
T Consensus        81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~-~~~g~~v~l~C~~~~~p--p~i~W~~~g~~l~~~~~--  155 (208)
T 3r4d_A           81 KDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT-VKELDSVTLTCLSNDIG--ANIQWLFNSQSLQLTER--  155 (208)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS-CCTTCCEEEEEECSCTT--CEEEEEETTEECCCCSS--
T ss_pred             cCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce-EeeCCCEEEEEECCCCC--CceEEEECCEeCCCCCC--
Confidence            99999999999874 44566777888632  2444444444 68899999999998854  59999999988765432  


Q ss_pred             EEEcccCcCCCeeEEEEEeCCceeEe-ccceEEEEEeecCCccceeEEEeeccccce
Q psy14542        146 LVLDRVQREDAGMYQCHIEDGKYHML-SSGELIIHQVDESDRYRSYQCRGVNKLTGA  201 (371)
Q Consensus       146 ~~~~~~~~~~~g~y~~~~~~~~~~~~-~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~  201 (371)
                                            +.+. .+..|.|.++..+| .|.|+|.+.|. .|.
T Consensus       156 ----------------------~~~~~~~~~L~i~~v~~~d-~G~Y~C~a~N~-~g~  188 (208)
T 3r4d_A          156 ----------------------MTLSQNNSILRIDPIKRED-AGEYQCEISNP-VSV  188 (208)
T ss_dssp             ----------------------EEEETTTTEEEESSCCGGG-CEEEEEEEECT-TCC
T ss_pred             ----------------------eEEcCCCCEEEEeccCHHh-CeEEEEEEecC-CCc
Confidence                                  1222 12679999999999 99999999998 554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.85  E-value=1.8e-21  Score=167.53  Aligned_cols=181  Identities=19%  Similarity=0.201  Sum_probs=137.7

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCcCCCe-EEEEEEE
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAG-MYQCHVS   79 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~G-~Y~C~~~   79 (371)
                      ..+|.+...|.. ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+...       ...+|.|.+++.+|+| .|+|.+.
T Consensus       156 c~~P~i~~~~~~-~~v~~G~~v~L~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~  233 (347)
T 2ifg_A          156 CGVPTLKVQVPN-ASVDVGDDVLLRCQV-EGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAE  233 (347)
T ss_dssp             CCCCEEEEECCS-SCCBTTCCEEEEEEE-ECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCE
T ss_pred             CCCCceeccCCc-eEEeCCCcEEEEEEE-ecCCCCEEEEEcCCceeecccccceecccceEEEeeCChHHCCCeEEEEEE
Confidence            457888888887 889999999999955 56778899999987543211       6789999999999999 9999999


Q ss_pred             cCCCCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeE
Q psy14542         80 ADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMY  159 (371)
Q Consensus        80 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y  159 (371)
                      +..|.....+.|.|. .+|.+   ......+|+.++|.|.+.+.|. +.++|++++..+.........+....       
T Consensus       234 n~~g~~~~~~~l~V~-~~P~i---~~~~~~~g~~v~l~C~~~g~P~-p~i~W~~~g~~l~~~~~~~~~~~~~~-------  301 (347)
T 2ifg_A          234 NDVGRAEVSVQVNVS-FPASV---QLHTAVEMHHWCIPFSVDGQPA-PSLRWLFNGSVLNETSFIFTEFLEPA-------  301 (347)
T ss_dssp             ETTEECCEEECCCCB-EEEEE---EECCCEESSSEEEEEEEEEESC-CEEEEEETTEECCCCSSEEEEECCCC-------
T ss_pred             cCCCCEEEEEEEEEc-CCCee---eeccCccCceEEEEEEeeecCC-CcEEEEeCCEECCCCcceeeEEEeec-------
Confidence            988877888888887 55554   1111257999999999999887 89999999998875432221111100       


Q ss_pred             EEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542        160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT  214 (371)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~  214 (371)
                             ......++.|.|.+++.+| +|.|+|.|.|. .|....+.   .+.|.
T Consensus       302 -------~~~~~~~~~L~I~~v~~~d-~G~Y~C~a~N~-~G~~~~~~---~l~V~  344 (347)
T 2ifg_A          302 -------ANETVRHGCLRLNQPTHVN-NGNYTLLAANP-FGQASASI---MAAFM  344 (347)
T ss_dssp             -------TTCCCEEEEEEESSCCGGG-CEEEEEEEEET-TEEEEEEE---EECSC
T ss_pred             -------CCCcccceEEEECCCCccc-CceEEEEEecC-CCceeeEE---EEEec
Confidence                   0001123679999999999 99999999999 88777666   67666

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.85  E-value=5.2e-20  Score=145.61  Aligned_cols=162  Identities=16%  Similarity=0.270  Sum_probs=115.0

Q ss_pred             ecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee---------C-CeeEEEEccCCcCCCeEEEE
Q psy14542          7 VKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR---------N-SDEVLVLDRVQREDAGMYQC   76 (371)
Q Consensus         7 v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~---------~-~~~~l~i~~~~~~d~G~Y~C   76 (371)
                      +.++|.|...|..  .+.+|++++|.|...  .+.+.+.|+|+|..+..         . ....|.|.+++.+|+|.|+|
T Consensus         5 ~~~~P~i~~~p~~--~v~~G~~v~L~C~~~--~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C   80 (201)
T 1nkr_A            5 VHRKPSLLAHPGP--LVKSEETVILQCWSD--VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRC   80 (201)
T ss_dssp             --CCCEEEEESCS--EEETTCCEEEEEEES--SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEE
T ss_pred             cCCCCeEEEEcCC--ccCCCCcEEEEEecc--CCCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEE
Confidence            3567888888874  789999999999754  36778999998764321         1 45789999999999999999


Q ss_pred             EEEcCC-----CCeEEEEEEEEec--ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEc
Q psy14542         77 HVSADD-----DSAQMSAQVILGG--ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLD  149 (371)
Q Consensus        77 ~~~~~~-----~~~~~~~~l~v~~--~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~  149 (371)
                      .+.+..     ...+..+.|.|.+  .+|.+...+...+.+|+.++|.|.+.+. . +.+.|+|++..+.......... 
T Consensus        81 ~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~~-~-~~~~w~k~g~~~~~~~~~~~~~-  157 (201)
T 1nkr_A           81 YGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRSS-Y-DMYHLSREGEAHERRLPAGPKV-  157 (201)
T ss_dssp             EEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESCSEECTTCEEEEEEEESSC-C-SEEEEEETTCSSCEEEECEEEE-
T ss_pred             eEecCCCCccccCCCCCEEEEeeccCCCCceecCCCCccCCCCeEEEEEeCCCC-C-ceEEEEECCcccCccccccccc-
Confidence            997642     1234556677763  2455655555566899999999999864 3 6899999987554321100000 


Q ss_pred             ccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        150 RVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       150 ~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                                     .+.    .+..|.|.+++  | +|.|+|.+.+.
T Consensus       158 ---------------~~~----~~~~L~i~~v~--d-~G~Y~C~a~~~  183 (201)
T 1nkr_A          158 ---------------NGT----FQADFPLGPAT--H-GGTYRCFGSFH  183 (201)
T ss_dssp             ---------------TTE----EEEEEEEEECC--S-CEEEEEEEEET
T ss_pred             ---------------CCc----eEEEEEeCCcC--C-CeeEEEEEEcC
Confidence                           000    12679999998  8 99999999865

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.85  E-value=2.7e-20  Score=145.12  Aligned_cols=148  Identities=15%  Similarity=0.275  Sum_probs=114.0

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEE--Eee------------------------CCeeEEEEccCCcCCCeEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLV--LRR------------------------NSDEVLVLDRVQREDAGMY   74 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~--~~~------------------------~~~~~l~i~~~~~~d~G~Y   74 (371)
                      +.+.+|++++|.|.+ .+.+.+.+.|++++..  +..                        ....+|.|.+++.+|+|.|
T Consensus         5 v~~~~G~~v~L~C~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   83 (184)
T 2ny1_B            5 VLGKKGDTVELTCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   83 (184)
T ss_dssp             EEEETTSCEEECCBC-SSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             EEEeCCCCEEEEEEE-cCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence            678999999999954 4777889999998752  210                        0255699999999999999


Q ss_pred             EEEEEcCCCCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcC
Q psy14542         75 QCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE  154 (371)
Q Consensus        75 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  154 (371)
                      +|.+.+..    ..+.|.|. .   +...+...+.+|+.++|.|.+.+.|. +.+.|++++..+..              
T Consensus        84 ~C~~~~~~----~~~~l~V~-~---~~~~~~~~v~~g~~~~l~C~~~~~p~-~~v~W~~~~~~~~~--------------  140 (184)
T 2ny1_B           84 ICEVEDQK----EEVQLLVF-G---LTANSDTHLLQGQSLTLTLESPPGSS-PSVQCRSPRGKNIQ--------------  140 (184)
T ss_dssp             EEEETTEE----EEEEEEEE-E---EEESSCSEEETTCCEEEEEECCTTCC-CEEEEECTTSCEEE--------------
T ss_pred             EEEEEcCC----CcEEEEEE-E---ecCCCCceeecCCCEEEEEEcCCCCC-CEEEEEeCCCcccc--------------
Confidence            99997653    35666666 2   22344445689999999999988776 89999998764422              


Q ss_pred             CCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542        155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT  214 (371)
Q Consensus       155 ~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~  214 (371)
                                       ....|.|.+++.+| .|.|+|.+.+. .+......   .|.|.
T Consensus       141 -----------------~~~~L~i~~v~~~d-~G~Y~C~a~n~-~~~~~~~~---~l~V~  178 (184)
T 2ny1_B          141 -----------------GGKTLSVSQLELQD-SGTWTCTVLQN-QKKVEFKI---DIVVL  178 (184)
T ss_dssp             -----------------ESSEEEESSCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEE
T ss_pred             -----------------CceEEEEecCCcCC-CeEEEEEEEEC-CceEEEEE---EEEEE
Confidence                             12689999999999 99999999987 66666666   77766

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.84  E-value=1.1e-19  Score=142.57  Aligned_cols=147  Identities=18%  Similarity=0.258  Sum_probs=107.3

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEe---e-----------C----------CeeEEEEccCCcCCCeEEEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR---R-----------N----------SDEVLVLDRVQREDAGMYQC   76 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~---~-----------~----------~~~~l~i~~~~~~d~G~Y~C   76 (371)
                      +.+.+|++++|.|.+....+...+.|++++..+.   .           .          .+++|.|.+++.+|+|.|+|
T Consensus         8 v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C   87 (193)
T 2if7_A            8 VNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRA   87 (193)
T ss_dssp             EEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCEEEEE
T ss_pred             EEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCceEEE
Confidence            7899999999999665445567899999876542   0           0          24679999999999999999


Q ss_pred             EEEcCCCCeEEEEEEEEecce--eeEecCCceeeecCC-cEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCc
Q psy14542         77 HVSADDDSAQMSAQVILGGEL--VEIASSNQVVVDVGH-RIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQR  153 (371)
Q Consensus        77 ~~~~~~~~~~~~~~l~v~~~~--~~~~~~~~~~~~~g~-~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~  153 (371)
                      .+.+..+.....+.|.|...+  |.+..... ....|. .++|.|.+.+.++.+.+.|++++..+...            
T Consensus        88 ~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~~-~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~~------------  154 (193)
T 2if7_A           88 QISTKTSAKLSSYTLRILRQLRNIQVTNHSQ-LFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQ------------  154 (193)
T ss_dssp             EEECSSCEEEEEEEEEEECCCEEEEEEECCC----CSSEEEEEEEEEESCCTTCEEEEEETTEEEESS------------
T ss_pred             EEEecCCCeEEEEEEEEEccCCCCeEecCce-eecCCCceEEEEEEEecCCCceEEEEEeCCEEcCCC------------
Confidence            999887766677888887432  33333321 123455 89999999986544899999998765322            


Q ss_pred             CCCeeEEEEEeCCceeEeccceEEEEEeecC-CccceeEEEeecccccee
Q psy14542        154 EDAGMYQCHIEDGKYHMLSSGELIIHQVDES-DRYRSYQCRGVNKLTGAS  202 (371)
Q Consensus       154 ~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~-d~~g~y~C~~~~~~~~~~  202 (371)
                                          ..|.|.....+ | .|.|+|.|.|. .+..
T Consensus       155 --------------------~~l~i~~~~~~~d-~G~Y~C~a~N~-~g~~  182 (193)
T 2if7_A          155 --------------------PNLTVSWDPRISS-EQDYTCIAENA-VSNL  182 (193)
T ss_dssp             --------------------SEEEEEECTTTCS-CCEEEEEEEET-TEEE
T ss_pred             --------------------CeEEEEeccCcCC-CCcEEEEEECC-CCcc
Confidence                                34666555554 7 99999999998 5554

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.84  E-value=1.9e-20  Score=149.62  Aligned_cols=184  Identities=14%  Similarity=0.186  Sum_probs=120.2

Q ss_pred             ecCCceeeecCCcEEEEEEecCCCCCceEEEeeC--CEEeeeCCeeEEEEccc---CcCCCeeEEEEEeCCceeEeccce
Q psy14542        101 ASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--GLVLRRNSDEVLVLDRV---QREDAGMYQCHIEDGKYHMLSSGE  175 (371)
Q Consensus       101 ~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~---~~~~~g~y~~~~~~~~~~~~~~~~  175 (371)
                      ...+...+.+|++++|.|.+.+.+. +.+.|++.  +....      ..+...   .....+.|....      ...+..
T Consensus         5 ~~~~~~~v~~G~~v~L~C~~~~~~~-~~v~W~k~~~~~~~~------~~~~~~~~~~~~~~~r~~~~~------~~~~~~   71 (213)
T 3mj8_L            5 TQPPLVSVALGQKATITCSGDKLSD-VYVHWYQQKAGQAPV------LVIYEDNRRPSGIPDHFSGSN------SGNMAT   71 (213)
T ss_dssp             BCCSEEEEETTSCEEEEEECSSTTT-SCEEEEEECTTSCCE------EEEBTTTBCCTTSCTTEEEEE------ETTEEE
T ss_pred             EeCCcEEEeCCCCEEEEEEcCCCCC-ceEEEEEECCCCCcE------EEEEECCccCCCccCcEEEEe------cCCEEE
Confidence            3344444589999999999997776 89999983  21110      111100   001112222111      112357


Q ss_pred             EEEEEeecCCccceeEEEeeccccc---eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CC
Q psy14542        176 LIIHQVDESDRYRSYQCRGVNKLTG---ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PL  251 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~~~~~~---~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~  251 (371)
                      |.|.+++.+| +|.|+|.+.+. .+   ......   .|.|..... .+|.+...+.... +..|+.+.|.|.+.+. |+
T Consensus        72 L~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~~~---~l~V~~~~~-~~P~i~~~~~~~~-~~~g~~v~l~C~~~g~~p~  144 (213)
T 3mj8_L           72 LTISKAQAGD-EADYYCQSWDG-TNSAWVFGSGT---KVTVLGQPN-AAPSVTLFPPSSE-ELKTNQATLVCMINGFYPA  144 (213)
T ss_dssp             EEESSCCGGG-CEEEEEEEEET-TTTEEEEBCCE---EEEEECSCC-BCCEEEEECCCHH-HHTTTEEEEEEEEEEEBSS
T ss_pred             EEECCCChhh-CEEEEEEeccC-CcceeEEcCce---EEEEeCCCC-CCCeEEccCCCcc-cccCCcEEEEEEeeceeCC
Confidence            9999999999 99999999988 54   222233   566653211 4555655544444 5589999999999985 44


Q ss_pred             -CceEEEeCCcccccCC---------ceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542        252 -PTIKWYKQDSPVEESD---------RIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL  304 (371)
Q Consensus       252 -~~v~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  304 (371)
                       +.+.|+++|..+..+.         ......+.|.|..+..+|+|.|+|.|.|..+....++
T Consensus       145 ~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  207 (213)
T 3mj8_L          145 DVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSL  207 (213)
T ss_dssp             CCEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred             CeEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence             4899999999876431         1112235689999999999999999999987665554

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.84  E-value=2.7e-20  Score=148.67  Aligned_cols=177  Identities=16%  Similarity=0.159  Sum_probs=116.9

Q ss_pred             CCCcEEEecc--CcEEEEEEecCCCCCCeeEEEeC---CEEEeeC------CeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542         17 PSGQVVVDVG--HRIELHCRVSPKRLSSAKAWLKD---GLVLRRN------SDEVLVLDRVQREDAGMYQCHVSADDDSA   85 (371)
Q Consensus        17 p~~~~~~~~G--~~v~l~C~~~~~~~~~~~~W~~~---~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   85 (371)
                      |.. +.+.+|  ++++|.|.+. + |.+.+.|+++   +..+...      ....|.|.+++.+|+|.|+|.+.+..+..
T Consensus        14 p~~-v~v~eG~~~~v~L~C~~~-~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~   90 (213)
T 2x1w_L           14 HGV-VYITENKNKTVVIPCLGS-I-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESY   90 (213)
T ss_dssp             CEE-EEECCSTTCEEEECCCBS-S-TTCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CE
T ss_pred             ceE-EEEecCCCccEEEeeccC-C-CCcEEEEEhhcCCCccccCCCcccccCCccEEEccCChhcCceEEEEEEECCeeE
Confidence            344 789999  9999999654 3 6688999884   5554433      34579999999999999999998854443


Q ss_pred             E-EEEEEEEec-ceeeEecCC-ce-eeecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEE
Q psy14542         86 Q-MSAQVILGG-ELVEIASSN-QV-VVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQ  160 (371)
Q Consensus        86 ~-~~~~l~v~~-~~~~~~~~~-~~-~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~  160 (371)
                      . ..+.|.|.. .++.+...+ .. .+.+|+.++|.|.+.+.+. ++.+.|++++..+.......... .....  +   
T Consensus        91 ~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~-~~~~~--~---  164 (213)
T 2x1w_L           91 QSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDL-KTQSG--S---  164 (213)
T ss_dssp             ECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEE-CCCSS--C---
T ss_pred             EEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEecccc-ccccC--c---
Confidence            2 226666642 233333333 32 5589999999999987543 25899999887543210000000 00000  0   


Q ss_pred             EEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542        161 CHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT  214 (371)
Q Consensus       161 ~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~  214 (371)
                            . .....+.|.|.+++.+| +|.|+|.+.|. .|......   .|.|.
T Consensus       165 ------~-~~~~~~~L~I~~v~~~D-~G~Y~C~a~N~-~g~~~~~~---~l~V~  206 (213)
T 2x1w_L          165 ------E-MKKFLSTLTIDGVTRSD-QGLYTCAASSG-LMTKKNST---FVRVH  206 (213)
T ss_dssp             ------S-CEEEEEEEEESSCCGGG-CEEEEEEEECS-SCEEEEEE---EEEEE
T ss_pred             ------c-ceeeeEEEEECCCCccc-CEEEEEEEecC-CCcEEEEE---EEEEe
Confidence                  0 01112579999999999 99999999999 77777766   88887

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.84  E-value=1e-20  Score=153.13  Aligned_cols=192  Identities=21%  Similarity=0.336  Sum_probs=122.9

Q ss_pred             CceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEe-----CCceeEeccceEEE
Q psy14542        104 NQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIE-----DGKYHMLSSGELII  178 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~-----~~~~~~~~~~~l~i  178 (371)
                      ....+.+|+.+.|.|.+.+.+..+.+.|++++......   .+. ..  ......|.....     ...+.+..++.|.|
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~---~~~-~~--~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i   81 (231)
T 2pet_A            8 PLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARP---RLA-SA--EMQGSELQVTMHDTRGRSPPYQLDSQGRLVL   81 (231)
T ss_dssp             SEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCC---EEE-EE--EEETTEEEEEECCCSCCSSCCEECTTCCEEE
T ss_pred             CcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeE---EEE-ec--cccCCccccccccccccccccccCCCceEEE
Confidence            33445899999999999887633799999865321100   000 00  000001111110     01111444466999


Q ss_pred             EEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeE-EEEEEe-ecCCCCceEE
Q psy14542        179 HQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESV-ILPCSA-QGNPLPTIKW  256 (371)
Q Consensus       179 ~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~-~l~C~~-~~~p~~~v~W  256 (371)
                      .+++.+| +|.|+|.+.+...+......   .|.|...+  ..|.+...+.... +..|+.+ .|.|.+ .+.|.+.+.|
T Consensus        82 ~~v~~~D-~G~Y~C~~~~~~~~~~~~~~---~l~V~~~p--~~~~~~~~~~~~~-~~~g~~~~~l~C~~~~~~p~p~i~W  154 (231)
T 2pet_A           82 AEAQVGD-ERDYVCVVRAGAAGTAEATA---RLNVFAKP--EATEVSPNKGTLS-VMEDSAQEIATCNSRNGNPAPKITW  154 (231)
T ss_dssp             SSCCGGG-CEEEEEEEECGGGCEEEEEE---EEEEEBCC--CCCEEEECCSSCC-TTCCSEEEEEEEEEEEEBSCCEEEE
T ss_pred             cccCccc-CceEEEEEEecCCCceEEEE---EEEEEecC--CCcEEecCCccee-ecCCCceEEEEEEeECcccCCEEEE
Confidence            9999999 99999999988325555555   67776322  2244444444444 6688887 999999 8899999999


Q ss_pred             EeCCcccccCC----ceEEe-------------cceEEEeccCCCCCeEEEEEEEcC-----CCC-ceeEEEEEE
Q psy14542        257 YKQDSPVEESD----RIQRI-------------GSSLSISHVEESDSGVWNCVANNS-----EGQ-DKMQLFIQY  308 (371)
Q Consensus       257 ~~~~~~~~~~~----~~~~~-------------~~~l~i~~~~~~d~G~Y~C~a~n~-----~g~-~~~~~~l~v  308 (371)
                      ++++..+....    ++...             .+.|.|.....+|+|.|+|.|.|.     .|. .+..+.|.|
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V  229 (231)
T 2pet_A          155 YRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL  229 (231)
T ss_dssp             EETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred             EECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEE
Confidence            99999876654    33211             156888866677799999999994     444 445555544

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.84  E-value=1.6e-20  Score=146.48  Aligned_cols=144  Identities=24%  Similarity=0.390  Sum_probs=107.5

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEcc-CCcCCCeEEEEEEEcCCCCeEEEEEEEEecceee
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDR-VQREDAGMYQCHVSADDDSAQMSAQVILGGELVE   99 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~   99 (371)
                      ....+|+++.|.|.+. + + +.+.|+|+|..+....+.+|.|.+ ++.+|+|.|+|.+.|..|.....+.+.|....+.
T Consensus         9 ~v~~~G~~v~L~C~~~-~-~-~~i~W~k~g~~l~~~~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v~~~~~~   85 (186)
T 1jbj_A            9 KVSISGTSVELTCPLD-S-D-ENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDA   85 (186)
T ss_dssp             EEEEETTEEEEECSSC-C-C-TTCEEEETTEEECSCCCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCCCSCCCC
T ss_pred             EEEeCCcEEEEEEeCC-C-C-CceEEEECCEECCCCCCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEEeccccc
Confidence            3457899999999654 3 3 349999999999865677899999 9999999999999998887655555555421111


Q ss_pred             E-----------------e---c--CCce---eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcC
Q psy14542        100 I-----------------A---S--SNQV---VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE  154 (371)
Q Consensus       100 ~-----------------~---~--~~~~---~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  154 (371)
                      .                 .   .  ....   .+.+|+.+.|.|.+   |. +.++|+|++..+.....           
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~-p~i~W~k~g~~i~~~~~-----------  150 (186)
T 1jbj_A           86 KKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TD-KTIKWLKDGSIISPLNA-----------  150 (186)
T ss_dssp             CCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SC-SCEEEEETTEECCCSSC-----------
T ss_pred             ccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CC-CeEEEEECCEECcccCC-----------
Confidence            0                 0   0  0001   12489999999998   44 79999999998764311           


Q ss_pred             CCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccce
Q psy14542        155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGA  201 (371)
Q Consensus       155 ~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~  201 (371)
                                       ....|.|.++..+| +|.|+|.|.|. .|.
T Consensus       151 -----------------~~~~L~i~~v~~~D-~G~Y~C~a~N~-~g~  178 (186)
T 1jbj_A          151 -----------------TKNTWNLGNNAKDP-RGTYQCQGAKE-TSN  178 (186)
T ss_dssp             -----------------CSSCCEEEETTSCC-EEEEEEEESSC-EEE
T ss_pred             -----------------CcceEEECCCCcCc-CEEEEEEEEcC-cCC
Confidence                             12679999999999 99999999998 554

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.84  E-value=1.6e-20  Score=154.04  Aligned_cols=174  Identities=19%  Similarity=0.264  Sum_probs=116.1

Q ss_pred             cEEEeccCcEEEEEEecC--CCCCCeeEEEeCCEEE-----ee----------------------C-----------Cee
Q psy14542         20 QVVVDVGHRIELHCRVSP--KRLSSAKAWLKDGLVL-----RR----------------------N-----------SDE   59 (371)
Q Consensus        20 ~~~~~~G~~v~l~C~~~~--~~~~~~~~W~~~~~~~-----~~----------------------~-----------~~~   59 (371)
                      ++.+.+|++++|.|.+..  ..+.+.+.|++++...     ..                      .           ...
T Consensus        11 ~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~   90 (250)
T 2fbo_J           11 EVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAP   90 (250)
T ss_dssp             EEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTTSC
T ss_pred             ceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCCcc
Confidence            388999999999996542  2567889999976421     10                      0           135


Q ss_pred             EEEEccCCcCCCeEEEEEEEcCCCCe-----EEEEEEEEecc--eeeEecCCc--eeeecCCcEEEEEEecCCCCCceEE
Q psy14542         60 VLVLDRVQREDAGMYQCHVSADDDSA-----QMSAQVILGGE--LVEIASSNQ--VVVDVGHRIELHCRVSPKRLSSAKA  130 (371)
Q Consensus        60 ~l~i~~~~~~d~G~Y~C~~~~~~~~~-----~~~~~l~v~~~--~~~~~~~~~--~~~~~g~~v~l~C~~~~~~~~~~v~  130 (371)
                      +|.|.+++.+|+|.|+|.+.+..+..     ...+.|.|...  ++.+.....  ..+.+|+.+.|.|.+.+.+. +.+.
T Consensus        91 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~-p~v~  169 (250)
T 2fbo_J           91 TLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCAN-ANVT  169 (250)
T ss_dssp             CEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTT-CEEE
T ss_pred             eEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCC-CeeE
Confidence            89999999999999999999876643     45788888743  333333222  33367999999999999887 7999


Q ss_pred             EeeCCEEeeeCCee--EEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        131 WLKDGLVLRRNSDE--VLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       131 W~~~~~~~~~~~~~--~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      |++++..+......  ........ .. ..+.......+........|.|.+++.+| .|.|+|.|.|.
T Consensus       170 W~k~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~D-~G~Y~C~a~N~  235 (250)
T 2fbo_J          170 WYTGPTFFENYETGTYQPLANKNQ-FG-ITWFSSEIAGRASFSGARNLVIRAAKITD-AGRVWCELATG  235 (250)
T ss_dssp             EEEEEECSSCSSSCEEEEEEEECT-TS-CEEECTTTTTSEEEETTTEEEECSCCGGG-CEEEEEEEESS
T ss_pred             EEeCCCcccccccCcceeEeccCC-CC-ccccCceEecccccCCccEEEEecCCccc-CEEEEEEecCC
Confidence            99998876543211  11111000 00 00000000112222234689999999999 99999999995

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.84  E-value=7.4e-20  Score=146.20  Aligned_cols=172  Identities=16%  Similarity=0.239  Sum_probs=117.6

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--C-E--EEe------------------eCCeeEEEEccCCc
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--G-L--VLR------------------RNSDEVLVLDRVQR   68 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~-~--~~~------------------~~~~~~l~i~~~~~   68 (371)
                      .+...| . +.+.+|++++|.|.+. +.+.+.+.|+|.  + .  .+.                  .....+|.|.+++.
T Consensus         3 ~v~~~~-~-~~v~~G~~v~L~C~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   79 (213)
T 3mj8_L            3 TLTQPP-L-VSVALGQKATITCSGD-KLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQA   79 (213)
T ss_dssp             CBBCCS-E-EEEETTSCEEEEEECS-STTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred             eEEeCC-c-EEEeCCCCEEEEEEcC-CCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCCh
Confidence            344444 4 8899999999999654 678889999982  1 1  110                  11567899999999


Q ss_pred             CCCeEEEEEEEcCCCC---eEEEEEEEEec---ceeeEecCCce-eeecCCcEEEEEEecCCCC-CceEEEeeCCEEeee
Q psy14542         69 EDAGMYQCHVSADDDS---AQMSAQVILGG---ELVEIASSNQV-VVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRR  140 (371)
Q Consensus        69 ~d~G~Y~C~~~~~~~~---~~~~~~l~v~~---~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~  140 (371)
                      +|+|.|+|.+.+..+.   ....+.|.|..   .+|.+...+.. .+..|+.++|.|.+.+.++ ++.+.|++++..+..
T Consensus        80 ~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~  159 (213)
T 3mj8_L           80 GDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQ  159 (213)
T ss_dssp             GGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             hhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCC
Confidence            9999999999988762   34456666662   33444433322 2257999999999988533 259999999998865


Q ss_pred             CCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeee
Q psy14542        141 NSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLL  204 (371)
Q Consensus       141 ~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~  204 (371)
                      ......    ... .         ++.+..  .+.|.|.++..+| .|.|+|.+.|. .+....
T Consensus       160 ~~~~~~----~~~-~---------~~~~~~--~s~L~i~~~~~~d-~G~Y~C~a~n~-~~~~~~  205 (213)
T 3mj8_L          160 GVKTTQ----PSK-S---------DSKYMA--TSYLTMTADAWKS-RNTFICKVTHG-GNTVEK  205 (213)
T ss_dssp             TEEECC----CEE-E---------TTEEEE--EEEEEEESHHHHS-CSCEEEEEEET-TEEEEE
T ss_pred             CcccCC----cCc-c---------CCcEEE--EEEEEEeHHHcCC-CCEEEEEEEEC-CccEEe
Confidence            321100    000 1         223322  2679999999999 99999999998 544433

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.83  E-value=1.8e-19  Score=145.32  Aligned_cols=182  Identities=20%  Similarity=0.217  Sum_probs=112.8

Q ss_pred             eeeecCCcEEEEEEecCCCC--CceEEEeeCCEEeee----CCeeEEEEcccCcCCCeeEEEEEeCCceeEe------cc
Q psy14542        106 VVVDVGHRIELHCRVSPKRL--SSAKAWLKDGLVLRR----NSDEVLVLDRVQREDAGMYQCHIEDGKYHML------SS  173 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~--~~~v~W~~~~~~~~~----~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~------~~  173 (371)
                      ..+.+|++++|.|.+.+.+.  ...+.|+|++.....    ...  ...........         ++....      .+
T Consensus        14 V~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~--~~~~~~~~~~~---------~r~~~~~~~~~~~~   82 (226)
T 4f80_A           14 ILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGK--EVEDRQSAPYR---------GRTSILRDGITAGK   82 (226)
T ss_dssp             EEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTE--ECGGGSCTTTT---------TTEEEECTTGGGTE
T ss_pred             EEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCe--EcccccCcccc---------ceEEEecccccCCe
Confidence            44589999999999976543  247999997642210    000  00000000000         111111      13


Q ss_pred             ceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-CCCC
Q psy14542        174 GELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLP  252 (371)
Q Consensus       174 ~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~  252 (371)
                      ..|.|.+++.+| +|.|+|.+.|. .+....     .+.+.     .++.......... +..|+.+.|.|.+.| .|.|
T Consensus        83 ~~L~I~~v~~~D-~G~Y~C~a~n~-~~~~~~-----~v~~~-----~~~~~~~~~~~~~-~~~g~~v~l~c~~~g~~P~p  149 (226)
T 4f80_A           83 AALRIHNVTASD-SGKYLCYFQDG-DFYEKA-----LVELK-----VAALGSDLHVDVK-GYKDGGIHLECRSTGWYPQP  149 (226)
T ss_dssp             EEEEESSCCGGG-CEEEEEEEEET-TEEEEE-----EEEEE-----EEBCCCCCEEEEE-EEETTEEEEEEEEEEEBSCC
T ss_pred             EEEEEeeCchHH-CeeEEEEEECC-CcEEEE-----EEEEe-----eccceecccceee-eccCCceeeEEEeccCCCCC
Confidence            579999999999 99999999987 555443     33443     2222222333334 788999999999987 5999


Q ss_pred             ceEEEeCCcccccC-Cce-EE-ecc---eEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecC
Q psy14542        253 TIKWYKQDSPVEES-DRI-QR-IGS---SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHG  311 (371)
Q Consensus       253 ~v~W~~~~~~~~~~-~~~-~~-~~~---~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  311 (371)
                      .++|+++++.+... ... .. .++   .+.+..+..+|+|+|+|.|.|..|....++.|.|.++
T Consensus       150 ~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~ep  214 (226)
T 4f80_A          150 QIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP  214 (226)
T ss_dssp             EEEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCTT
T ss_pred             EEEEEECCceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECCC
Confidence            99999976544322 221 11 222   2344567889999999999999999999998888764

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.83  E-value=4.2e-21  Score=152.91  Aligned_cols=176  Identities=24%  Similarity=0.394  Sum_probs=124.6

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee----------C-------CeeEEEEccCCcCCC
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR----------N-------SDEVLVLDRVQREDA   71 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~----------~-------~~~~l~i~~~~~~d~   71 (371)
                      .++.+...|.. +.+.+|+++.|.|.+. +.|.+.+.|++++..+..          .       ...+|.|.+++.+|+
T Consensus         3 ~~~~i~~~~~~-~~v~~G~~v~L~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~   80 (209)
T 1nbq_A            3 GSVTVHSSEPE-VRIPENNPVKLSCAYS-GFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDT   80 (209)
T ss_dssp             CCCEEECSCSB-CCEETTCCCEEECEEE-SCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSC
T ss_pred             ceEEEEcCCCc-eEEEcCCCEEEEEEEe-CCCCcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHC
Confidence            45667777776 8899999999999654 557889999997654210          0       236899999999999


Q ss_pred             eEEEEEEEcCCCC--eEEEEEEEEecceeeEe-cCCceeeecCCcEEEEEEe-cCCCCCceEEEeeCCEEeeeCCeeEEE
Q psy14542         72 GMYQCHVSADDDS--AQMSAQVILGGELVEIA-SSNQVVVDVGHRIELHCRV-SPKRLSSAKAWLKDGLVLRRNSDEVLV  147 (371)
Q Consensus        72 G~Y~C~~~~~~~~--~~~~~~l~v~~~~~~~~-~~~~~~~~~g~~v~l~C~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~  147 (371)
                      |.|+|.+.+..+.  ....+.|.|. .+|.+. ......+..|+.+.|.|.+ .+.|. +.+.|++++..+........ 
T Consensus        81 G~Y~C~~~~~~g~~~~~~~~~l~V~-~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~v~W~~~~~~~~~~~~~~~-  157 (209)
T 1nbq_A           81 GTYTCMVSEEGGNSYGEVKVKLIVL-VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPP-SEYTWFKDGIVMPTNPKSTR-  157 (209)
T ss_dssp             SEEEEEEEETTSSCEECCEEECCEE-BCCCCCCCCCBSEEETTSCEEECCCCCSCBSC-CEEEEEETTCCCCSCSSSSS-
T ss_pred             cEEEEEEecCCCCccceEEEEEEEe-cCCcCCCcccccceecCCEEEEEEeCCCCCCC-ceeEEEECCeeCCCccccce-
Confidence            9999999987653  3456777776 333332 2223345899999999997 67676 89999999987765431100 


Q ss_pred             EcccCcCCCeeEEEEEeCCceeEe-ccceEEEEEeecCCccceeEEEeeccccceeeee
Q psy14542        148 LDRVQREDAGMYQCHIEDGKYHML-SSGELIIHQVDESDRYRSYQCRGVNKLTGASLLS  205 (371)
Q Consensus       148 ~~~~~~~~~g~y~~~~~~~~~~~~-~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~  205 (371)
                           ...         +.++... ..+.|.|.++..+| .|.|+|.+.|. .|....+
T Consensus       158 -----~~~---------~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~~~s  200 (209)
T 1nbq_A          158 -----AFS---------NSSYVLNPTTGELVFDPLSASD-TGEYSCEARNG-YGTPMTS  200 (209)
T ss_dssp             -----SCT---------TCCCCCCTTTCCEEESSCCGGG-CCCEEEEEECS-SSCCEEC
T ss_pred             -----eee---------ccceEEcCCcceEEEEeccccC-CeEEEEEEeCC-cCccccc
Confidence                 000         0111111 23689999999999 99999999999 6665333

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.83  E-value=3.4e-18  Score=134.23  Aligned_cols=244  Identities=17%  Similarity=0.254  Sum_probs=161.7

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCC---CCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCeE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRL---SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQ   86 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~---~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   86 (371)
                      .+++.+.|+. ..+..|+.++|.|.+..+.|   ..+++|+|||..+.. ....|.+..++..|+|.|+|.+.+..+...
T Consensus         2 ~~tVs~~P~~-~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG-aT~tLti~s~t~sdSG~YqCvVTDa~Gcs~   79 (304)
T 3shs_A            2 AFTVSIQSNK-RCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN-NTATLTVADATSENAGSYKVTVQDTDTMTS   79 (304)
T ss_dssp             CEEEEEEESC-SSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC-CSSEEEESSCCGGGCEEEEEEEEETTTCCE
T ss_pred             ccEEEeCCCC-ccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC-CcceEEeeeccccCCeEEEEEEEECCCCee
Confidence            4678888988 78999999999998888877   568999999988764 456899999999999999999998877665


Q ss_pred             EEEEEEEec-ceeeEecC-Ccee-eecCCcEEEEEEe--cCCCC-----CceEEEeeCCEEeeeCCeeEEEEcccCcCCC
Q psy14542         87 MSAQVILGG-ELVEIASS-NQVV-VDVGHRIELHCRV--SPKRL-----SSAKAWLKDGLVLRRNSDEVLVLDRVQREDA  156 (371)
Q Consensus        87 ~~~~l~v~~-~~~~~~~~-~~~~-~~~g~~v~l~C~~--~~~~~-----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~  156 (371)
                      ....+.|.. ..+.+... |... ...|..+.|.+.+  .+..+     ..+|+|++++..+...               
T Consensus        80 tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~IsgA---------------  144 (304)
T 3shs_A           80 VESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTT---------------  144 (304)
T ss_dssp             EECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEESS---------------
T ss_pred             eeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccCc---------------
Confidence            443344432 22223222 2222 2567889999988  54322     3699999999877543               


Q ss_pred             eeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeec
Q psy14542        157 GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKK  236 (371)
Q Consensus       157 g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~  236 (371)
                                       ..|++......+ .|.|+|.+.+. .+....+. ...+.+.     ..+.-........ +..
T Consensus       145 -----------------q~lT~sS~Tate-aG~YtV~VTn~-~~~c~~s~-~~~i~~~-----~~~v~~~~~~~~~-~~~  198 (304)
T 3shs_A          145 -----------------QDITIQEFTADK-NGVYTVKVWGE-SEDSAASA-STKIMLA-----TMNVDQDVVESKT-VAL  198 (304)
T ss_dssp             -----------------SEEEECSCCGGG-CEEEEEEEESS-SGGGCEEE-EEEEEEC-----EEEEEECCCSEEE-EET
T ss_pred             -----------------cccceeeEEecC-CeEEEEEEEcC-CCCccccc-ceEEEEE-----ccccchhheEeeh-hhc
Confidence                             345666667777 99999999988 44222222 1133333     2222222222333 888


Q ss_pred             CCeEEEEEEee----cC--CCC----ceEEEeCCc-ccccC----------CceE-EecceEEEeccCCCCCeEEEEEEE
Q psy14542        237 DESVILPCSAQ----GN--PLP----TIKWYKQDS-PVEES----------DRIQ-RIGSSLSISHVEESDSGVWNCVAN  294 (371)
Q Consensus       237 g~~~~l~C~~~----~~--p~~----~v~W~~~~~-~~~~~----------~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~  294 (371)
                      |+.+.|...+.    |+  ..|    .+.|+.... .+.+.          ..+. ..+++|.-....-+|...|+|++.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (304)
T 3shs_A          199 GNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAK  278 (304)
T ss_dssp             TSCEEECCEEEEECCSCCTTCCEEEEEEEEEEECTTCCSCEEEESSSEECGGGEEECTTSCEEESSCCGGGCEEEEEEEE
T ss_pred             CcEEEEEEEEeeccccCCCCCCceEEEEEEEEeecCccCchhhhhhhhhhhccceeCCCcceeecccccccchheeeHHH
Confidence            99998887653    22  223    468874322 22111          1111 345678888888999999999986


Q ss_pred             cC
Q psy14542        295 NS  296 (371)
Q Consensus       295 n~  296 (371)
                      ..
T Consensus       279 ~~  280 (304)
T 3shs_A          279 LY  280 (304)
T ss_dssp             EE
T ss_pred             HH
Confidence            43

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.83  E-value=3.6e-19  Score=143.10  Aligned_cols=170  Identities=15%  Similarity=0.251  Sum_probs=112.2

Q ss_pred             CCCcEEEeccCcEEEEEEecCCCC-----CCeeEEEeCCEEEeeC---------------------------CeeEEEEc
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKRL-----SSAKAWLKDGLVLRRN---------------------------SDEVLVLD   64 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~~-----~~~~~W~~~~~~~~~~---------------------------~~~~l~i~   64 (371)
                      |..++.+.+|++++|.|.+. +.|     ...+.|+|++..+...                           ...+|.|.
T Consensus         7 p~~~v~~~~G~~v~L~C~~~-~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~   85 (222)
T 3sbw_C            7 PKDLYVVEYGSNMTIECKFP-VEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQIT   85 (222)
T ss_dssp             SCSEEEEETTSCEEEEEECC-CCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEES
T ss_pred             CCccEEEEcCCcEEEEeEec-CCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEc
Confidence            33447899999999999653 222     3479999976333110                           23589999


Q ss_pred             cCCcCCCeEEEEEEEcCCCCeEEEEEEEEecceeeEec-CCceeeecCCcEEEEEEecCCCCCceEEEeeC-CEEeeeCC
Q psy14542         65 RVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIAS-SNQVVVDVGHRIELHCRVSPKRLSSAKAWLKD-GLVLRRNS  142 (371)
Q Consensus        65 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~-~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~-~~~~~~~~  142 (371)
                      +++.+|+|.|+|.+.+ .+.....+.|.|. .++.... ........|+.+.|.|.+.+.|. +.+.|+++ +..+....
T Consensus        86 ~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~-~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~-p~i~W~~~~g~~~~~~~  162 (222)
T 3sbw_C           86 DVKLQDAGVYRCMISY-GGADYKRITVKVN-APYNKINQRILVVDPVTSEHELTCQAEGYPK-AEVIWTSSDHQVLSGKT  162 (222)
T ss_dssp             SCCGGGCEEEEEEEES-SSEEEEEEEEEEE-BCCCCCEEEEEEEETTTTEEEEEEEEEEBSC-CEEEEEETTCCEECCEE
T ss_pred             CcccccCeEEEEEEEe-CCCceeEEEEEEE-CCCCCCCceeeeeecCCCcEEEEEEecCCCC-CeEEEEECCCceecCcc
Confidence            9999999999999998 5556777888887 3332211 11123478999999999998776 89999998 55443321


Q ss_pred             eeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542        143 DEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT  214 (371)
Q Consensus       143 ~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~  214 (371)
                      ...     ......|         .+.     ...+..+...| .|.|+|.+.|. .+......   .+.|.
T Consensus       163 ~~~-----~~~~~~~---------~~~-----~~~~l~v~~~d-~g~Y~C~a~n~-~g~~~~~~---~l~v~  210 (222)
T 3sbw_C          163 TTT-----NSKREEK---------LFN-----VTSTLRINTTT-NEIFYCTFRRL-DPEENHTA---ELVIP  210 (222)
T ss_dssp             EEE-----ECC-------------CEE-----EEEEEEEECCT-TCEEEEEEEET-TTTEEEEE---EEECC
T ss_pred             ceE-----EEcCCCC---------CEE-----EEEEEEEeccC-CcEEEEEEEeC-ccceeeEE---EEEec
Confidence            100     0001111         111     12222456788 99999999999 77766666   77776

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.83  E-value=1.8e-19  Score=141.41  Aligned_cols=170  Identities=15%  Similarity=0.184  Sum_probs=111.6

Q ss_pred             eecCCcEEEEEEecCCCCCceEEEeeCCEEeeeC---Ce--eEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEee
Q psy14542        108 VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---SD--EVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVD  182 (371)
Q Consensus       108 ~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~---~~--~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~  182 (371)
                      +.+|++++|.|.+.+......+.|++++..+...   ..  ..+...      ...|     .++..+..+..|.|.+++
T Consensus        10 ~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~------~~~~-----~~R~~~~~~~sL~I~~v~   78 (193)
T 2if7_A           10 GILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVT------NPKQ-----GKRLNFTQSYSLQLSNLK   78 (193)
T ss_dssp             EETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEEC------CHHH-----HTTEEECTTCCEEECSCC
T ss_pred             EEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeec------Cccc-----cccEEECCCeEEEECCCC
Confidence            3899999999998753332689999987644211   00  000000      0000     124445556889999999


Q ss_pred             cCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCC-eEEEEEEeecC-CCCceEEEeCC
Q psy14542        183 ESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDE-SVILPCSAQGN-PLPTIKWYKQD  260 (371)
Q Consensus       183 ~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~-~~~l~C~~~~~-p~~~v~W~~~~  260 (371)
                      .+| +|.|.|.+.+. .+......   .|.|....  ..|.+....  .. ...|. .++|.|.+.+. |.+.+.|+++|
T Consensus        79 ~~D-~G~Y~C~~~~~-~~~~~~~~---~L~V~~~~--~~p~i~~~~--~~-~~~g~~~v~L~C~~~g~~p~p~i~W~~~g  148 (193)
T 2if7_A           79 MED-TGSYRAQISTK-TSAKLSSY---TLRILRQL--RNIQVTNHS--QL-FQNMTCELHLTCSVEDADDNVSFRWEALG  148 (193)
T ss_dssp             GGG-CEEEEEEEECS-SCEEEEEE---EEEEECCC--EEEEEEECC--C----CSSEEEEEEEEEESCCTTCEEEEEETT
T ss_pred             ccc-CceEEEEEEec-CCCeEEEE---EEEEEccC--CCCeEecCc--ee-ecCCCceEEEEEEEecCCCceEEEEEeCC
Confidence            999 99999999988 55544444   67776321  223333222  11 34455 89999999985 57899999998


Q ss_pred             cccccCCceEEecceEEEeccCCC-CCeEEEEEEEcCCCCceeEEE
Q psy14542        261 SPVEESDRIQRIGSSLSISHVEES-DSGVWNCVANNSEGQDKMQLF  305 (371)
Q Consensus       261 ~~~~~~~~~~~~~~~l~i~~~~~~-d~G~Y~C~a~n~~g~~~~~~~  305 (371)
                      ..+..       ++.|.|.....+ |+|.|+|.|.|..|..+..+.
T Consensus       149 ~~l~~-------~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~~  187 (193)
T 2if7_A          149 NTLSS-------QPNLTVSWDPRISSEQDYTCIAENAVSNLSFSVS  187 (193)
T ss_dssp             EEEES-------SSEEEEEECTTTCSCCEEEEEEEETTEEEEEEEE
T ss_pred             EEcCC-------CCeEEEEeccCcCCCCcEEEEEECCCCccccccc
Confidence            76543       345777655554 899999999999998765543

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.83  E-value=9e-20  Score=147.62  Aligned_cols=164  Identities=20%  Similarity=0.280  Sum_probs=114.3

Q ss_pred             cEEEeccCcEEEEEEecCCCCC-CeeEEEeCCEE-------------------Ee----------eCCeeEEEEccCCcC
Q psy14542         20 QVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLV-------------------LR----------RNSDEVLVLDRVQRE   69 (371)
Q Consensus        20 ~~~~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~-------------------~~----------~~~~~~l~i~~~~~~   69 (371)
                      .+.+.+|+++.|.|. ..+.+. +.+.|++++..                   +.          ...++.|.|.+++.+
T Consensus         9 ~~~v~~G~~v~L~C~-~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~~~   87 (231)
T 2pet_A            9 LVEVMRGKSVILDCT-PTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVG   87 (231)
T ss_dssp             EEEEETTCCEEECCC-CBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCCGG
T ss_pred             cEEEEcCCCEEEecc-cCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccCcc
Confidence            378999999999995 445553 78999974321                   11          113345999999999


Q ss_pred             CCeEEEEEEEcCC-CCeEEEEEEEEecce--eeEecCCce-eeecCCcE-EEEEEe-cCCCCCceEEEeeCCEEeeeCC-
Q psy14542         70 DAGMYQCHVSADD-DSAQMSAQVILGGEL--VEIASSNQV-VVDVGHRI-ELHCRV-SPKRLSSAKAWLKDGLVLRRNS-  142 (371)
Q Consensus        70 d~G~Y~C~~~~~~-~~~~~~~~l~v~~~~--~~~~~~~~~-~~~~g~~v-~l~C~~-~~~~~~~~v~W~~~~~~~~~~~-  142 (371)
                      |+|.|+|.+.+.. +.....+.|.|...+  +.+...+.. .+.+|+.+ .|.|.+ .+.|. +.+.|++++..+.... 
T Consensus        88 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~-p~i~W~~~~~~~~~~~~  166 (231)
T 2pet_A           88 DERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPA-PKITWYRNGQRLEVPVE  166 (231)
T ss_dssp             GCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSC-CEEEEEETTEECCCCSS
T ss_pred             cCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccC-CEEEEEECCccCccccc
Confidence            9999999999876 666778888887332  334433332 23688887 999999 77776 8999999999887654 


Q ss_pred             --eeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        143 --DEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       143 --~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                        ............+.|.|.+         .  +.|.|.....+| .|.|+|.|.|.
T Consensus       167 ~~~~~~~~~~~~~~~~g~~~~---------~--~~L~i~~~~~dd-~g~Y~C~a~n~  211 (231)
T 2pet_A          167 MNPEGYMTSRTVREASGLLSL---------T--STLYLRLRKDDR-DASFHCAAHYS  211 (231)
T ss_dssp             CCSSEEEEEEEEECTTSCEEE---------E--EEEEEECCGGGG-GCEEEEEEEEE
T ss_pred             cccceeecceeEecCCCeEEE---------E--EEEEEecchhhC-CceEEEEEEcC
Confidence              2222222223333443332         1  568887666667 99999999995

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.83  E-value=2.4e-19  Score=141.75  Aligned_cols=170  Identities=12%  Similarity=0.133  Sum_probs=113.2

Q ss_pred             ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccce
Q psy14542         96 ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE  175 (371)
Q Consensus        96 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~  175 (371)
                      .+|.+...+...+.+|++++|.|.+.+ +. +.+.|+|++..+......    ..                ......+..
T Consensus         7 ~~P~i~~~p~~~v~~G~~v~L~C~~~~-~~-~~~~w~k~g~~~~~~~~~----~~----------------~~~~~~~~~   64 (201)
T 1nkr_A            7 RKPSLLAHPGPLVKSEETVILQCWSDV-MF-EHFLLHREGMFNDTLRLI----GE----------------HHDGVSKAN   64 (201)
T ss_dssp             CCCEEEEESCSEEETTCCEEEEEEESS-CC-SEEEEEEESSSCEEEEEE----CE----------------EETTEEEEE
T ss_pred             CCCeEEEEcCCccCCCCcEEEEEeccC-CC-CEEEEEECCCcCCcceee----ee----------------cCCCCceEE
Confidence            455666656655689999999999974 44 799999988754321100    00                000012267


Q ss_pred             EEEEEeecCCccceeEEEeeccccc--eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCc
Q psy14542        176 LIIHQVDESDRYRSYQCRGVNKLTG--ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT  253 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~~~~~~--~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~  253 (371)
                      |.|.+++.+| +|.|+|.+.+...+  ....+. ...|.|...  ..+|.+...+. .. +.+|+.++|.|.+.+ +.+.
T Consensus        65 l~I~~v~~~D-~G~Y~C~a~~~~~~~~~~~~s~-~~~l~V~~~--~~~p~i~~~p~-~~-v~~G~~v~L~C~~~~-~~~~  137 (201)
T 1nkr_A           65 FSISRMTQDL-AGTYRCYGSVTHSPYQVSAPSD-PLDIVIIGL--YEKPSLSAQPG-PT-VLAGENVTLSCSSRS-SYDM  137 (201)
T ss_dssp             EEESSCCGGG-CEEEEEEEEBTTBTTCCCCCCC-CEEEEEECS--SCCCEEEEESC-SE-ECTTCEEEEEEEESS-CCSE
T ss_pred             EEeccCCccc-CeEEEEeEecCCCCccccCCCC-CEEEEeecc--CCCCceecCCC-Cc-cCCCCeEEEEEeCCC-CCce
Confidence            9999999999 99999999764111  111111 115555532  13456655444 34 899999999999885 5678


Q ss_pred             eEEEeCCcccccCCc-eEE----ecceEEEeccCCCCCeEEEEEEEcC
Q psy14542        254 IKWYKQDSPVEESDR-IQR----IGSSLSISHVEESDSGVWNCVANNS  296 (371)
Q Consensus       254 v~W~~~~~~~~~~~~-~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~  296 (371)
                      +.|+|+|..+..... ...    .++.|.|.++.  |+|.|+|.|.+.
T Consensus       138 ~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~  183 (201)
T 1nkr_A          138 YHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFH  183 (201)
T ss_dssp             EEEEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred             EEEEECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcC
Confidence            999999987754321 111    25679999998  999999999865

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.83  E-value=2e-19  Score=143.66  Aligned_cols=169  Identities=18%  Similarity=0.241  Sum_probs=114.6

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC--EEE----------e-----------eCCeeEEEEccCCc
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG--LVL----------R-----------RNSDEVLVLDRVQR   68 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~--~~~----------~-----------~~~~~~l~i~~~~~   68 (371)
                      .+...|.. +.+.+|++++|.|.+ .+.+.+.+.|+|++  ..+          .           .....+|.|.+++.
T Consensus         3 ~v~~~p~~-~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   80 (213)
T 3d9a_L            3 VLTQSPAT-LSVTPGNSVSLSCRA-SQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVET   80 (213)
T ss_dssp             CEEEECSE-EEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred             eEEeCCcc-EEEeCCCcEEEEEEC-CCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCCh
Confidence            45555666 889999999999964 55667789999842  111          0           01345899999999


Q ss_pred             CCCeEEEEEEEcCCCCeE-EEEEEEEec--ceeeEecC-CceeeecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCe
Q psy14542         69 EDAGMYQCHVSADDDSAQ-MSAQVILGG--ELVEIASS-NQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSD  143 (371)
Q Consensus        69 ~d~G~Y~C~~~~~~~~~~-~~~~l~v~~--~~~~~~~~-~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~  143 (371)
                      +|+|.|+|.+.+..+... ....|.|..  .+|.+... +......|+.++|.|.+.+. |.+..+.|++++..+.....
T Consensus        81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~  160 (213)
T 3d9a_L           81 EDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL  160 (213)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEE
T ss_pred             hhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceee
Confidence            999999999998765432 234566652  24544442 22223578999999999874 44248999999998765411


Q ss_pred             eEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        144 EVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       144 ~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      .   .........|.|         .  ..+.|.|.++..+| .|.|+|.|.|.
T Consensus       161 ~---~~~~~~~~~~~~---------~--~~s~L~i~~~~~~d-~G~Y~C~a~n~  199 (213)
T 3d9a_L          161 N---SWTDQDSKDSTY---------S--MSSTLTLTKDEYER-HNSYTCEATHK  199 (213)
T ss_dssp             E---EECCCCTTTCCE---------E--EEEEEEEEHHHHHH-CCEEEEEEECT
T ss_pred             e---cCCCccCCCCCE---------E--EEEEEEEeccccCC-CCEEEEEEEEc
Confidence            0   111111222222         2  12689999999999 99999999997

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.83  E-value=1e-19  Score=143.92  Aligned_cols=156  Identities=19%  Similarity=0.324  Sum_probs=108.1

Q ss_pred             ecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccc
Q psy14542        109 DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYR  188 (371)
Q Consensus       109 ~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g  188 (371)
                      .+|++++|.|.+   +. +.+.|+|++..+....                            ..+..|.|.+++.+| +|
T Consensus        16 ~~G~~v~L~C~~---p~-~~i~W~k~g~~l~~~~----------------------------~~~~~L~i~~v~~~D-sG   62 (204)
T 1sy6_A           16 QEDGSVLLTCDA---EA-KNITWFKDGKMIGFLT----------------------------EDKKKWNLGSNAKDP-RG   62 (204)
T ss_dssp             CSSSEEEEEECS---CS-SEEEEEETTEEEEEEE----------------------------SSCCCEEEEEGGGCC-EE
T ss_pred             cCCCeEEEEEcC---CC-CEEEEEECCEECCCCC----------------------------CCCCeEEeCCCCcCC-CE
Confidence            579999999998   44 7999999998775420                            012579999999999 99


Q ss_pred             eeEEEeeccccceeeeeeccceeeeec------c-------------------h-hccccceeeeeeeeeeee-cCCeEE
Q psy14542        189 SYQCRGVNKLTGASLLSVNRGRLSLTE------N-------------------K-RLLSAAKMFEKHRILNVK-KDESVI  241 (371)
Q Consensus       189 ~y~C~~~~~~~~~~~~~~~~~~l~v~~------~-------------------~-~~~~p~~~~~~~~~~~~~-~g~~~~  241 (371)
                      .|+|.+.+. .. .  ..   .+.+..      .                   . ...++.+...+  .. +. +|+.++
T Consensus        63 ~Y~C~~~~~-~s-~--~~---~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~-v~~~G~~v~  132 (204)
T 1sy6_A           63 MYQCKGSQN-KS-K--PL---QVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP--YK-VSISGTTVI  132 (204)
T ss_dssp             EEEEESSSS-CC-C--CE---EEEEEC------------------------------------CCC--CE-EEEETTEEE
T ss_pred             EEEEEecCC-CC-e--eE---EEEEEEeccccccccccccccccccccccccccccccccceecCC--ce-eeecCCcEE
Confidence            999997653 21 1  11   333320      0                   0 00012221111  12 44 899999


Q ss_pred             EEEEeecCCCCceEEEeCCcccccC---CceEEecceEEEecc-CCCCCeEEEEEEEcCCCCc-eeEEEEEEe
Q psy14542        242 LPCSAQGNPLPTIKWYKQDSPVEES---DRIQRIGSSLSISHV-EESDSGVWNCVANNSEGQD-KMQLFIQYA  309 (371)
Q Consensus       242 l~C~~~~~p~~~v~W~~~~~~~~~~---~~~~~~~~~l~i~~~-~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~  309 (371)
                      |.|.  +.|.+.+.|++++..+...   ..+...++.|.|.++ ..+|+|.|+|.|.|..|.. +..+.|.+.
T Consensus       133 L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~~  203 (204)
T 1sy6_A          133 LTCP--QYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR  203 (204)
T ss_dssp             EECS--CCCSSCEEEEETTEEESCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEEC
T ss_pred             EEcC--CCCCCceEEEECCEECCCccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEEe
Confidence            9998  7888999999999877543   223346789999999 9999999999999999973 566666553

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.82  E-value=1.7e-19  Score=144.13  Aligned_cols=181  Identities=14%  Similarity=0.183  Sum_probs=116.9

Q ss_pred             ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcc--cCcCCCeeEEEEEeCCceeEe---ccceEEEE
Q psy14542        105 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDR--VQREDAGMYQCHIEDGKYHML---SSGELIIH  179 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~g~y~~~~~~~~~~~~---~~~~l~i~  179 (371)
                      ...+.+|++++|.|.+.+.+. +.+.|++++....   ...+....  ......+         ++...   ....|.|.
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~-~~v~W~k~~~~~~---~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~L~I~   76 (213)
T 3d9a_L           10 TLSVTPGNSVSLSCRASQSIG-NNLHWYQQKSHES---PRLLIKYASQSISGIPS---------RFSGSGSGTDFTLSIN   76 (213)
T ss_dssp             EEEECTTCCEEEEEEESSCCT-TCEEEEEECTTSC---CEEEEETTTEECTTSCT---------TEEEEEETTEEEEEES
T ss_pred             cEEEeCCCcEEEEEECCCCCC-CCEEEEEeCCCCC---cEEEEEEcccccccccc---------cEEEEcCCCEEEEEEC
Confidence            334589999999999998876 7899998532100   00011000  0000011         22222   12479999


Q ss_pred             EeecCCccceeEEEeecccccee-eeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-CCCC-ceEE
Q psy14542        180 QVDESDRYRSYQCRGVNKLTGAS-LLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLP-TIKW  256 (371)
Q Consensus       180 ~~~~~d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W  256 (371)
                      +++.+| +|.|+|.+.+. .+.. ....   .+.|...  ..+|.+........ ...|+.+.|.|.+.+ .|.+ .+.|
T Consensus        77 ~v~~~D-~G~Y~C~~~~~-~~~~~~~~~---~l~V~~~--~~~p~v~~~~~~~~-~~~g~~~~l~C~~~g~~p~~~~v~W  148 (213)
T 3d9a_L           77 SVETED-FGMYFCQQSNS-WPYTFGGGT---KLEIKRA--DAAPTVSIFPPSSE-QLTSGGASVVCFLNNFYPKDINVKW  148 (213)
T ss_dssp             SCCGGG-CEEEEEEECSS-SSCEECCCE---EEEECCC--CBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCCEEEE
T ss_pred             CCChhh-CEEEEEeeecC-CcceeCCCE---EEEEecC--CCCceeEeECCChh-hcCCCcEEEEEEEeeecCCceEEEE
Confidence            999999 99999999987 4422 2222   5555421  13566555443333 457899999999987 5665 8999


Q ss_pred             EeCCcccccCCce-----------EEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542        257 YKQDSPVEESDRI-----------QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI  306 (371)
Q Consensus       257 ~~~~~~~~~~~~~-----------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  306 (371)
                      +++|..+......           ....+.|.|.++..+|+|.|+|.|.|..........+
T Consensus       149 ~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i  209 (213)
T 3d9a_L          149 KIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSF  209 (213)
T ss_dssp             EETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEEEE
T ss_pred             EcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceEEEe
Confidence            9999877654111           0123489999999999999999999988775444433

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.82  E-value=7.7e-20  Score=144.63  Aligned_cols=144  Identities=20%  Similarity=0.293  Sum_probs=101.8

Q ss_pred             EeccCcEEEEEEecCCCCCCeeEEEeCCEEEee--CCeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEe------
Q psy14542         23 VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR--NSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILG------   94 (371)
Q Consensus        23 ~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~------   94 (371)
                      +.+|++++|.|.+    |.+.|.|+|+|..+..  ....+|.|.+++.+|+|.|+|.+.+. ...  .+.|.+.      
T Consensus        15 ~~~G~~v~L~C~~----p~~~i~W~k~g~~l~~~~~~~~~L~i~~v~~~DsG~Y~C~~~~~-~s~--~~~v~v~~~~~~~   87 (204)
T 1sy6_A           15 YQEDGSVLLTCDA----EAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQN-KSK--PLQVYYRMGSADD   87 (204)
T ss_dssp             CCSSSEEEEEECS----CSSEEEEEETTEEEEEEESSCCCEEEEEGGGCCEEEEEEESSSS-CCC--CEEEEEEC-----
T ss_pred             ecCCCeEEEEEcC----CCCEEEEEECCEECCCCCCCCCeEEeCCCCcCCCEEEEEEecCC-CCe--eEEEEEEEecccc
Confidence            4589999999954    6789999999998864  25678999999999999999996543 222  2334333      


Q ss_pred             ---------------------c---ceeeEecCCceee-ecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEc
Q psy14542         95 ---------------------G---ELVEIASSNQVVV-DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLD  149 (371)
Q Consensus        95 ---------------------~---~~~~~~~~~~~~~-~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~  149 (371)
                                           .   .++.+...+. .+ .+|++++|.|.  +.+. +.+.|++++..+.....      
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~v~~~G~~v~L~C~--g~p~-p~i~W~k~~~~l~~~~~------  157 (204)
T 1sy6_A           88 AKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPY-KVSISGTTVILTCP--QYPG-SEILWQHNDKNIGGDED------  157 (204)
T ss_dssp             -------------------------------CCCC-EEEEETTEEEEECS--CCCS-SCEEEEETTEEESCCTT------
T ss_pred             ccccccccccccccccccccccccccccceecCCc-eeeecCCcEEEEcC--CCCC-CceEEEECCEECCCccC------
Confidence                                 0   0122222222 33 48999999998  5566 78999999988754311      


Q ss_pred             ccCcCCCeeEEEEEeCCceeEeccceEEEEEe-ecCCccceeEEEeeccccce
Q psy14542        150 RVQREDAGMYQCHIEDGKYHMLSSGELIIHQV-DESDRYRSYQCRGVNKLTGA  201 (371)
Q Consensus       150 ~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~-~~~d~~g~y~C~~~~~~~~~  201 (371)
                                      +......+..|.|.++ +.+| +|.|+|.+.|. .|.
T Consensus       158 ----------------~~~~~~~~~~L~I~~v~~~~D-~G~Y~C~A~N~-~g~  192 (204)
T 1sy6_A          158 ----------------DKNIGSDEDHLSLKEFSELEQ-SGYYVCYPRGS-KPE  192 (204)
T ss_dssp             ----------------CTTEEEETTEEEETTCCHHHH-CEEEEEEETTS-CGG
T ss_pred             ----------------CceEecCCCEEEEeeCCcccc-CEEEEEEeccC-CCC
Confidence                            0111112478999999 9999 99999999998 553

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.82  E-value=1.5e-19  Score=145.43  Aligned_cols=186  Identities=17%  Similarity=0.229  Sum_probs=119.8

Q ss_pred             eeecCCcEEEEEEecCCC----CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec------cceE
Q psy14542        107 VVDVGHRIELHCRVSPKR----LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS------SGEL  176 (371)
Q Consensus       107 ~~~~g~~v~l~C~~~~~~----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~------~~~l  176 (371)
                      .+.+|++++|.|.+.+.+    ....+.|++++.....     .....      +........++..+..      +..|
T Consensus         6 ~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i-----~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~sL   74 (222)
T 4i0k_A            6 VALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLV-----HSFTE------GRDQGSAYSNRTALFPDLLVQGNASL   74 (222)
T ss_dssp             CCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEE-----EEEET------TEEEEESSCSCEECCTTTGGGTBCCE
T ss_pred             EEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEE-----EEEcC------CcccccceeCcEEEecccccCCeEEE
Confidence            347999999999987754    2268999997643211     00000      0000000122333332      4679


Q ss_pred             EEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEe-ecCCCCceE
Q psy14542        177 IIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSA-QGNPLPTIK  255 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~  255 (371)
                      .|.+++.+| +|.|+|.+.+. . ......   .+.|...  ...|.+...+. .. +..|+.+.|.|.+ .+.|.+.+.
T Consensus        75 ~I~~v~~~D-~G~Y~C~~~~~-~-~~~~~~---~l~V~~~--~~~p~i~~~~~-~~-v~~G~~~~l~C~~~~g~P~~~v~  144 (222)
T 4i0k_A           75 RLQRVRVTD-EGSYTCFVSIQ-D-FDSAAV---SLQVAAP--YSKPSMTLEPN-KD-LRPGNMVTITCSSYQGYPEAEVF  144 (222)
T ss_dssp             EECSCCGGG-CSCEEEEEEEC-C-CCCCCC---CCCCCBC--CCCCEEECCC-------CCSEEEEEEEEEEEBSCCEEE
T ss_pred             EECCccccc-CEEEEEEEEeC-C-CceEEE---EEEEEcC--CCCCcEEeCCC-ce-ecCCceEEEEEecccccCCCeEE
Confidence            999999999 99999999975 2 222233   5555532  12344444332 23 7889999999999 789999999


Q ss_pred             EEeC-CcccccCCceE---Eecc---eEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542        256 WYKQ-DSPVEESDRIQ---RIGS---SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       256 W~~~-~~~~~~~~~~~---~~~~---~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      |+++ +..+.......   ..++   .|.|.++..+|+|.|+|.|.|..|....++.|.|.++|.
T Consensus       145 W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  209 (222)
T 4i0k_A          145 WKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPL  209 (222)
T ss_dssp             EECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC---
T ss_pred             EEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCcc
Confidence            9994 44444322221   1122   378999999999999999999999999999999998877

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.82  E-value=4.6e-19  Score=141.24  Aligned_cols=176  Identities=13%  Similarity=0.228  Sum_probs=114.1

Q ss_pred             ceeeecCCcEEEEEEecCCCCCceEEEeeCC--EEeeeCCeeEEEEcc--cCcCCCeeEEEEEeCCceeEe---ccceEE
Q psy14542        105 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDG--LVLRRNSDEVLVLDR--VQREDAGMYQCHIEDGKYHML---SSGELI  177 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~--~~~~~~g~y~~~~~~~~~~~~---~~~~l~  177 (371)
                      ...+.+|++++|.|.+.+.+. +.+.|+++.  ..+.     .+....  ......+         ++...   .+..|.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~-~~v~W~~~~~g~~~~-----~~~~~~~~~~~~~~~---------r~~~~~~~~~~~L~   73 (210)
T 1lk3_L            9 ALTVSPGEKLTISCKASESVT-SRMHWYQQKPGQQPK-----LLIYKASNLASGVPA---------RFSGSGSGTDFTLT   73 (210)
T ss_dssp             EEEECTTSCEEEEEEESSCCT-TCEEEEEECTTSCCE-----EEEETTTEECTTCCT---------TEEEEEETTEEEEE
T ss_pred             cEEEcCCCCEEEEeeCCCccC-CCEEEEEECCCCCeE-----EEEEccccccCCccc---------cEEEEecCCEEEEE
Confidence            344589999999999998876 789999843  2110     011000  0000011         22222   124799


Q ss_pred             EEEeecCCccceeEEEeecccccee-eeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-CCCC-ce
Q psy14542        178 IHQVDESDRYRSYQCRGVNKLTGAS-LLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLP-TI  254 (371)
Q Consensus       178 i~~~~~~d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v  254 (371)
                      |.+++.+| +|.|.|.+.+. .+.. ....   .+.|...  ..+|.+...+.... +..|+.++|.|.+.| .|.+ .+
T Consensus        74 I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~---~l~V~~~--~~~P~v~~~~~~~~-~~~g~~v~l~C~~~g~~p~~~~v  145 (210)
T 1lk3_L           74 IDPVEADD-TAIYFCQQSWN-GPLTFGAGT---KLELKRA--DAAPTVSIFPPSTE-QLATGGASVVCLMNNFYPRDISV  145 (210)
T ss_dssp             ESSCCGGG-CEEEEEEECSS-SSCEECCCE---EEEECCC--CBCCEEEEECCCHH-HHTTTEEEEEEEEEEEBSSCCEE
T ss_pred             ECCCCHHH-CeEEEEEEEcC-CCceeCCCE---EEEEcCC--CcCCeEEEECCchh-hccCCcEEEEEEEEeEeCCceEE
Confidence            99999999 99999999987 4322 1222   4555421  13565555443333 457999999999987 4554 89


Q ss_pred             EEEeCCcccccC-Cc---e-------EEecceEEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542        255 KWYKQDSPVEES-DR---I-------QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ  303 (371)
Q Consensus       255 ~W~~~~~~~~~~-~~---~-------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  303 (371)
                      .|+++|..+... ..   .       ....+.|.|..+..+|+|.|+|.|.|.......+
T Consensus       146 ~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~  205 (210)
T 1lk3_L          146 KWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSPVV  205 (210)
T ss_dssp             EEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSCEE
T ss_pred             EEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCCeee
Confidence            999999877654 11   0       0112379999999999999999999987754433

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.82  E-value=1.9e-19  Score=144.30  Aligned_cols=173  Identities=16%  Similarity=0.249  Sum_probs=111.5

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC---CEE--E----------e------------eCCeeEEEE
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD---GLV--L----------R------------RNSDEVLVL   63 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~---~~~--~----------~------------~~~~~~l~i   63 (371)
                      +.+...| . +.+.+|++++|.|.+....+.+.+.|+|.   +..  +          .            .....+|.|
T Consensus         2 ~~v~~~p-~-~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I   79 (218)
T 3s96_B            2 LVLTQSS-S-ASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSI   79 (218)
T ss_dssp             CSEECCS-E-EEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEE
T ss_pred             CeEEeCC-c-EEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEE
Confidence            3455555 4 88999999999996544327788999982   110  0          0            013567999


Q ss_pred             ccCCcCCCeEEEEEEEcCCC-----CeEEEEEEEEec---ceeeEec-CCceeeecCCcEEEEEEecCC-CCCceEEEee
Q psy14542         64 DRVQREDAGMYQCHVSADDD-----SAQMSAQVILGG---ELVEIAS-SNQVVVDVGHRIELHCRVSPK-RLSSAKAWLK  133 (371)
Q Consensus        64 ~~~~~~d~G~Y~C~~~~~~~-----~~~~~~~l~v~~---~~~~~~~-~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~  133 (371)
                      .+++.+|+|.|.|.+.+..+     .....+.|.|..   .+|.+.. .+......|+.++|.|.+.+. |.+..+.|++
T Consensus        80 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k  159 (218)
T 3s96_B           80 SNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKA  159 (218)
T ss_dssp             SSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             ccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEE
Confidence            99999999999999998765     122345666663   3344443 222233567899999999884 4424899999


Q ss_pred             CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceee
Q psy14542        134 DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASL  203 (371)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~  203 (371)
                      ++..+..........    . ..|         .+.+.  +.|.|.....+| .|.|+|.+.|. .+...
T Consensus       160 ~g~~l~~~~~~~~~~----~-~~~---------~~~~~--s~l~i~~~~~~d-~g~Y~C~a~n~-~~~~~  211 (218)
T 3s96_B          160 NGTPITQGVDTSNPT----K-EGN---------KFMAS--SFLHLTSDQWRS-HNSFTCQVTHE-GDTVE  211 (218)
T ss_dssp             TTEEC----------------------------CEEEE--EEEEEEHHHHHT-CSCEEEEEEET-TEEEE
T ss_pred             CCEECcCceecCccc----c-cCC---------cEEEE--EEEEEeHHHccC-CCeEEEEEEeC-CCccc
Confidence            999876532110000    0 012         22222  568899898889 99999999998 55443

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.82  E-value=6.1e-19  Score=141.88  Aligned_cols=197  Identities=14%  Similarity=0.174  Sum_probs=118.0

Q ss_pred             CCceeeecCCcEEEEEEecCCCCC--ceEEEeeCCEEeeeCC--eeEEEEcccCcCCCeeEEE-EEeCCceeEeccceEE
Q psy14542        103 SNQVVVDVGHRIELHCRVSPKRLS--SAKAWLKDGLVLRRNS--DEVLVLDRVQREDAGMYQC-HIEDGKYHMLSSGELI  177 (371)
Q Consensus       103 ~~~~~~~~g~~v~l~C~~~~~~~~--~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~g~y~~-~~~~~~~~~~~~~~l~  177 (371)
                      ++......|++++|.|.+.+.+.+  ..+.|+|++..+....  ........... ..+.+.. ...........+.+|.
T Consensus         8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~sL~   86 (225)
T 4fmk_A            8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQF-SKDRLSFVRARPETNADLRDATLA   86 (225)
T ss_dssp             CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTS-CTTTEEECCCSCSCCSSCCBCCEE
T ss_pred             CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccc-cccceeeeccccccccccCcEEEE
Confidence            344555899999999999876652  2489999765432110  00111111000 0000000 0000011112346799


Q ss_pred             EEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEee-cCCCCceEE
Q psy14542        178 IHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQ-GNPLPTIKW  256 (371)
Q Consensus       178 i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W  256 (371)
                      |.+++.+| +|.|+|.+.+. .+......  ..+.+.     .+|.....+.... ...++...+.|.+. +.|++.+.|
T Consensus        87 I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~c~~~~~~P~~~~~w  156 (225)
T 4fmk_A           87 FRGLRVED-EGNYTCEFATF-PNGTRRGV--TWLRVI-----AQPENHAEAQEVT-IGPQSVAVARCVSTGGRPPARITW  156 (225)
T ss_dssp             ECSCCGGG-CEEEEEEEEEE-TTEEEEEE--EEEEEE-----BCCEEEEEECCBC-CSSSCEEEEEEEEEEEBSCCEEEE
T ss_pred             EccCCHHH-CcceEEEEEeC-CCcceeee--eeeeee-----cCCceeeccccee-ecceeeeeeeeeecCCCCCCEEEE
Confidence            99999999 99999999887 44333222  034444     4444444444444 66677777777754 578889999


Q ss_pred             EeCCcccccCCceE-------EecceEEEeccCCCCCeEEEEEEEcCCCCceeE--EEEEEec
Q psy14542        257 YKQDSPVEESDRIQ-------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ--LFIQYAH  310 (371)
Q Consensus       257 ~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~--~~l~v~~  310 (371)
                      ++++..+.......       ...+.|.|..+..+|+|.|+|.|.|..+.....  +.|.|.+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~Y  219 (225)
T 4fmk_A          157 ISSLGGEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRY  219 (225)
T ss_dssp             ECSSCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBTT
T ss_pred             EECCccccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEEE
Confidence            99887554332211       123469999999999999999999998876544  4454443

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.81  E-value=3.9e-19  Score=145.51  Aligned_cols=176  Identities=18%  Similarity=0.248  Sum_probs=112.1

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCC-----eeEEEeCCEEEe----------------e-C----------C
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSS-----AKAWLKDGLVLR----------------R-N----------S   57 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~-----~~~W~~~~~~~~----------------~-~----------~   57 (371)
                      .+.+.+.+.....+.+|++++|.|.+. +.|.+     .+.|++++....                . .          .
T Consensus         2 ~~~v~v~~p~~~~v~~G~~v~L~C~~~-g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (248)
T 3pv7_A            2 DLKVEMMAGGTQITPLNDNVTIFCNIF-YSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSG   80 (248)
T ss_dssp             CEEEECSTTSEEEEETTSCEEECCEEE-ESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTT
T ss_pred             ceEEEEeCCCCeEEeCCCCEEEeeEEe-cCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCC
Confidence            355666666657899999999999654 33333     499999521100                0 0          3


Q ss_pred             eeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecC-CCCCc-eEEEeeCC
Q psy14542         58 DEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSP-KRLSS-AKAWLKDG  135 (371)
Q Consensus        58 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~~-~v~W~~~~  135 (371)
                      +.+|.|.+++.+|+|.|+|.+.+..+.....+.|.|. .+|.+...+......|+.+.|.|.+.+ .|. + .+.|++++
T Consensus        81 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~-~~P~v~~~~~~~~~~~~~~~L~C~~~g~~P~-pi~v~W~k~g  158 (248)
T 3pv7_A           81 DASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVV-ASPASRLLLDQVGMKENEDKYMCESSGFYPE-AINITWEKQT  158 (248)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE-BCCEEEEECC--------CEEEEEEEEEBSS-CCEEEEEEEC
T ss_pred             cEEEEeCCCCHHHCeEEEEEEEeCCccceeEEEEEEe-cCCceEEecCCccccCCCcEEEEEEccEECC-CeEEEEEECC
Confidence            4569999999999999999999887777788889988 566666555544567888899999988 566 5 99999998


Q ss_pred             EEeeeCCee--EEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccce
Q psy14542        136 LVLRRNSDE--VLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGA  201 (371)
Q Consensus       136 ~~~~~~~~~--~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~  201 (371)
                      ..+......  ............|         .+..  .+.|.|.....+| .|.|+|.+.|. .+.
T Consensus       159 ~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~--~s~L~i~~~~~~d-~g~YtC~a~n~-~~~  213 (248)
T 3pv7_A          159 QKFPHPIEISEDVITGPTIKNMDG---------TFNV--TSCLKLNSSQEDP-GTVYQCVVRHA-SLH  213 (248)
T ss_dssp             SSSCSCEEECTTEEEEEEEECTTS---------CEEE--EEEEECC--CCCT-TCEEEEEEECT-TCS
T ss_pred             ccCCCccccccceeecccEECCCC---------CEEE--EEEEEEcCccccC-CCEEEEEEECC-CCC
Confidence            644321100  0000001111222         2222  2578888888888 99999999998 544

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.81  E-value=1.2e-19  Score=145.39  Aligned_cols=164  Identities=12%  Similarity=0.128  Sum_probs=111.8

Q ss_pred             CcEEEeccCcEEEEEEecCCCCCC---eeEEEeCCEEEeeC------------------------------CeeEEEEcc
Q psy14542         19 GQVVVDVGHRIELHCRVSPKRLSS---AKAWLKDGLVLRRN------------------------------SDEVLVLDR   65 (371)
Q Consensus        19 ~~~~~~~G~~v~l~C~~~~~~~~~---~~~W~~~~~~~~~~------------------------------~~~~l~i~~   65 (371)
                      ..+.+.+|++++|.|.+.. .+.+   .+.|+|++..+...                              .+.+|.|.+
T Consensus         7 ~~vtv~~G~~v~L~C~v~~-~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~   85 (218)
T 4frw_A            7 DVVTVVLGQDAKLPCFYRG-DSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRN   85 (218)
T ss_dssp             SEEEEETTSCEEECCEECC-CTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESS
T ss_pred             CeEEEEcCCCEEEEEEEEc-CCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEee
Confidence            3388999999999996543 3333   48999965321100                              345799999


Q ss_pred             CCcCCCeEEEEEEEcCCCCeE-EEEEEEEecceee-EecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCe
Q psy14542         66 VQREDAGMYQCHVSADDDSAQ-MSAQVILGGELVE-IASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD  143 (371)
Q Consensus        66 ~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v~~~~~~-~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~  143 (371)
                      ++.+|+|.|.|.+.+..+... ....+.+...++. ........+..|+.+.+.|.+.+.|. +.++|++++..+.....
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~-p~i~W~~~~~~~~~~~~  164 (218)
T 4frw_A           86 AVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPA-PSVTWDTEVKGTTSSRS  164 (218)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSC-CEEEEEESSCCEEEEEE
T ss_pred             ccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcC-ceEEEEECCcccccCce
Confidence            999999999999987655443 3344444422222 22233334478999999999998887 89999999876654321


Q ss_pred             eEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeee
Q psy14542        144 EVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSV  206 (371)
Q Consensus       144 ~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~  206 (371)
                      ..         .         ++...  ..+.|.|.++..+| .|.|+|.|.|. .|......
T Consensus       165 ~~---------~---------~~~~~--~~s~L~i~~~~~~d-~g~YtC~a~N~-~g~~~~~~  205 (218)
T 4frw_A          165 FK---------H---------SRSAA--VTSEFHLVPSRSMN-GQPLTCVVSHP-GLLQDQRI  205 (218)
T ss_dssp             EE---------C---------SSSEE--EEEEEEECCCGGGT-TCEEEEEEECT-TCSSCEEE
T ss_pred             Ee---------c---------CCcEE--EEEEEEEeeCCHHh-CeEEEEEEEeC-CCCeEEEE
Confidence            10         0         11111  12579999999999 99999999998 66555444

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.81  E-value=3.1e-19  Score=143.13  Aligned_cols=189  Identities=13%  Similarity=0.212  Sum_probs=115.5

Q ss_pred             EecCCceeeecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccC--cCCCeeEEEEEeCCceeEe---cc
Q psy14542        100 IASSNQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQ--REDAGMYQCHIEDGKYHML---SS  173 (371)
Q Consensus       100 ~~~~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~--~~~~g~y~~~~~~~~~~~~---~~  173 (371)
                      +...+...+.+|++++|.|.+.+. +. +.+.|++....  ......+......  ....+      ..+++.+.   .+
T Consensus         4 v~~~p~~~v~~G~~v~L~C~~~~~~~~-~~v~W~k~~~~--~~~~~~~~~~~~~~~~~~~~------~~~r~~~~~~~~~   74 (218)
T 3s96_B            4 LTQSSSASFSLGASAKLTCTLNSQHST-YTIEWYQQQPL--KPPKYVMELKKDGSHSTGDG------IPDRFSGSSSGAD   74 (218)
T ss_dssp             EECCSEEEEETTSCEEEEEEECGGGTT-CCEEEEEECTT--SCCEEEEEECTTSCEEECSS------CCTTEEEEEETTE
T ss_pred             EEeCCcEEECCCCcEEEEEECCCCCCC-cEEEEEEECCC--CCeEEEEEEcccCccccCCC------cccceEEecCCce
Confidence            334444445899999999999887 66 89999983210  0001111111100  00000      01233222   23


Q ss_pred             ceEEEEEeecCCccceeEEEeeccccc-----eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec
Q psy14542        174 GELIIHQVDESDRYRSYQCRGVNKLTG-----ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG  248 (371)
Q Consensus       174 ~~l~i~~~~~~d~~g~y~C~~~~~~~~-----~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~  248 (371)
                      ..|.|.+++.+| +|.|.|.+.+. .+     ......   .|.|..... .+|.+........ ...|+.+.|.|.+.+
T Consensus        75 ~~L~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~~~~~---~l~V~~~~~-~~P~~~~~~~~~~-~~~~~~v~L~C~~~g  147 (218)
T 3s96_B           75 RYLSISNIQPED-EAIYICGVGDT-IKEQFVYVFGGGT---KVTVLGQPK-STPTLTVFPPSSE-ELKENKATLVCLISN  147 (218)
T ss_dssp             EEEEESSCCGGG-CEEEEEEEEEE-ETTEEEEEECCCE---EEEEESCCC-BCCEEEEECCCHH-HHHTTEEEEEEEEEE
T ss_pred             EEEEEccCCccc-CEEEEEEEecC-CCCceeEEEcCcE---EEEEecCCC-CCceEEeeCCCcc-cccCCcEEEEEEECc
Confidence            579999999999 99999999987 43     122222   566653211 3455554333333 556789999999988


Q ss_pred             -CCCC-ceEEEeCCcccccCCce---------EEecceEEEeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542        249 -NPLP-TIKWYKQDSPVEESDRI---------QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL  304 (371)
Q Consensus       249 -~p~~-~v~W~~~~~~~~~~~~~---------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  304 (371)
                       .|.+ .+.|+++|..+..+...         ....+.|.|.....+|+|.|+|.|.|..+....++
T Consensus       148 ~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  214 (218)
T 3s96_B          148 FSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL  214 (218)
T ss_dssp             EBSSCCEEEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred             ccCCCeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence             5666 89999999887653111         11123488888888899999999999987655443

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.81  E-value=6e-19  Score=136.25  Aligned_cols=162  Identities=16%  Similarity=0.276  Sum_probs=112.2

Q ss_pred             ecCCcEEEEEEec--CCCCCceEEEee--CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542        109 DVGHRIELHCRVS--PKRLSSAKAWLK--DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES  184 (371)
Q Consensus       109 ~~g~~v~l~C~~~--~~~~~~~v~W~~--~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~  184 (371)
                      ..|++++|.|...  +.+. +.|.|++  ++..+......           ...+   ..++++.+..+++|.|.+++.+
T Consensus        12 ~~G~sv~L~~~~~~~~~~~-~~i~W~k~~~~~~i~~~~~~-----------~~~~---~~~~R~~~~~ngsL~I~~v~~~   76 (182)
T 1hnf_A           12 ALGQDINLDIPSFQMSDDI-DDIKWEKTSDKKKIAQFRKE-----------KETF---KEKDTYKLFKNGTLKIKHLKTD   76 (182)
T ss_dssp             ETTSCEEECCTTCCCCSSE-EEEEEEEGGGCCEEEEECGG-----------GCEE---ESCTTEEECTTSCEEECSCCGG
T ss_pred             ecCCCEEEeCCcccccCcC-CEEEEEECCCCcEEEEEeCc-----------cCCC---CCCCeEEECCCCCEEECCCChh
Confidence            7899999999442  2233 7899999  87765321100           0000   1145777778889999999999


Q ss_pred             CccceeEEEeeccccceee--eeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcc
Q psy14542        185 DRYRSYQCRGVNKLTGASL--LSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSP  262 (371)
Q Consensus       185 d~~g~y~C~~~~~~~~~~~--~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~  262 (371)
                      | +|.|+|.+.+. .|...  ..+   .|.|.+.  ...|.+..         .+..+.|+|.+.+.|.+.|.|+++|..
T Consensus        77 D-sG~Y~c~~~n~-~g~~~~~~~~---~L~V~~~--~~~P~i~~---------~~~~v~L~C~~~~~p~~~~~W~~~g~~  140 (182)
T 1hnf_A           77 D-QDIYKVSIYDT-KGKNVLEKIF---DLKIQER--VSKPKISW---------TCINTTLTCEVMNGTDPELNLYQDGKH  140 (182)
T ss_dssp             G-CEEEEEEEEET-TSCEEEEEEE---EEEEECC--CCCCEEEE---------ETTTTEEEEECSSCSSCEEEEEESSCE
T ss_pred             h-CEEEEEEEEeC-CCceeEEEEE---EEEEcCc--CCCCEEEE---------ccCcEEEEeEccCCCCCEEEEEECCEE
Confidence            9 99999999987 55433  233   5666532  12333321         234689999999989999999999988


Q ss_pred             cccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        263 VEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       263 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      + ..     ....|.+.. ..+|+|.|+|.|.|..|..+....+..
T Consensus       141 l-~~-----~~~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~~c  179 (182)
T 1hnf_A          141 L-KL-----SQRVITHKW-TTSLSAKFKCTAGNKVSKESSVEPVSC  179 (182)
T ss_dssp             E-EE-----ESSCEEEEC-CSCEEEEEEEEEECSSCEEEEEEEEEE
T ss_pred             C-CC-----CCcEEEEec-ccCCCcEEEEEEEeCCCCcEEcceecC
Confidence            7 21     234455543 478999999999999999887766643

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.81  E-value=7.4e-19  Score=140.35  Aligned_cols=170  Identities=19%  Similarity=0.274  Sum_probs=115.9

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC---E--EEee------------------CCeeEEEEccCC
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG---L--VLRR------------------NSDEVLVLDRVQ   67 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~---~--~~~~------------------~~~~~l~i~~~~   67 (371)
                      +.+...|.. +.+.+|++++|.|.+. +.+.+.+.|+|.+   .  .+..                  ....+|.|.+++
T Consensus         2 ~~v~~~p~~-~~v~~G~~v~L~C~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   79 (213)
T 3r06_A            2 IQMTQSPSS-LPASLGDRVTINCQAS-QDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLE   79 (213)
T ss_dssp             CCEEEECSE-EEECTTCCEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             CeeEeCCCE-EEecCCCcEEEEEEeC-CCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCC
Confidence            456666666 8999999999999655 4478899999821   1  1110                  145589999999


Q ss_pred             cCCCeEEEEEEEcCCCCe-EEEEEEEEe--cceeeEecCCcee-eecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCC
Q psy14542         68 REDAGMYQCHVSADDDSA-QMSAQVILG--GELVEIASSNQVV-VDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNS  142 (371)
Q Consensus        68 ~~d~G~Y~C~~~~~~~~~-~~~~~l~v~--~~~~~~~~~~~~~-~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~  142 (371)
                      .+|+|.|+|.+.+..+.. .....|.|.  ..+|.+...+... ...|+.++|.|.+.+.++ .+.+.|++++..+....
T Consensus        80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~  159 (213)
T 3r06_A           80 SEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGV  159 (213)
T ss_dssp             GGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTE
T ss_pred             cccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCce
Confidence            999999999998765422 233456662  2445554433322 357888999999987644 36999999999876531


Q ss_pred             eeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        143 DEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       143 ~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                         +..........|.|..           .+.|.|.....+| .|.|+|.+.|.
T Consensus       160 ---~~~~~~~~~~~g~~~~-----------~s~l~i~~~~~~d-~g~YtC~v~n~  199 (213)
T 3r06_A          160 ---LQSVTDQDSKDSTYSL-----------SSTLSLTKADYER-HNLYTCEVTHK  199 (213)
T ss_dssp             ---EEEECCCCTTTCCEEE-----------EEEEEEEHHHHHT-CCEEEEEEEET
T ss_pred             ---EeccCceeCCCCcEEE-----------EEEEEeCHHHhcc-CCeEEEEEEec
Confidence               0111222233343322           2578899898899 99999999987

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.81  E-value=5.8e-19  Score=139.64  Aligned_cols=160  Identities=15%  Similarity=0.205  Sum_probs=109.0

Q ss_pred             EEEeccCcEEEEEEecC---CCCCCeeEEEeCCEEEe--------------------eCCeeEEEEccCCcCCCeEEEEE
Q psy14542         21 VVVDVGHRIELHCRVSP---KRLSSAKAWLKDGLVLR--------------------RNSDEVLVLDRVQREDAGMYQCH   77 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~---~~~~~~~~W~~~~~~~~--------------------~~~~~~l~i~~~~~~d~G~Y~C~   77 (371)
                      +.+.+|++++|.|.+..   +.+.+.+.|++++..+.                    .....+|.|.+++.+|+|.|+|.
T Consensus         4 v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C~   83 (201)
T 1dr9_A            4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV   83 (201)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred             EEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEEE
Confidence            67899999999996542   23567899999998762                    11456899999999999999999


Q ss_pred             EEcCCCCe-----EEEEEEEEecce--eeEecCCceeeecCCcEEEEEEec-CCCCCceEEEeeCCEEeeeCCeeEEEEc
Q psy14542         78 VSADDDSA-----QMSAQVILGGEL--VEIASSNQVVVDVGHRIELHCRVS-PKRLSSAKAWLKDGLVLRRNSDEVLVLD  149 (371)
Q Consensus        78 ~~~~~~~~-----~~~~~l~v~~~~--~~~~~~~~~~~~~g~~v~l~C~~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~  149 (371)
                      +.+..+..     ...+.|.|...+  |.+...   ....|+.+.|.|.+. +.|. +.++|++++..+..... .....
T Consensus        84 ~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~---~~~~g~~~~l~C~~~~g~P~-p~i~W~k~g~~l~~~~~-~~~~~  158 (201)
T 1dr9_A           84 VLKYEKDAFKREHLAEVTLSVKADFPTPSISDF---EIPTSNIRRIICSTSGGFPE-PHLSWLENGEELNAINT-TVSQD  158 (201)
T ss_dssp             EEECCTTSCEEEEEEEEEEEEECCCCCCEEEEE---ECSSTTEEEEEEEEEEESSC-EEEEEEESSCEECCSEE-EEEEC
T ss_pred             EEcCCCCccccccccEEEEEEcCCCCCCceEec---cCCCCCeEEEEEecCCccCC-CEEEEEECCEECccccc-eEEec
Confidence            99876543     356777777321  222110   114588999999995 7777 89999999988764421 11110


Q ss_pred             ccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeee
Q psy14542        150 RVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLS  205 (371)
Q Consensus       150 ~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~  205 (371)
                          .+.+         .+.     ...+..+...| .|.|+|.|.|. .+.....
T Consensus       159 ----~~~~---------~~~-----~~~~~~v~~~d-~g~Y~C~a~n~-~~~~s~~  194 (201)
T 1dr9_A          159 ----PETE---------LYA-----VSSKLDFNMTT-NHSFMCLIKYG-HLRVNQT  194 (201)
T ss_dssp             ----TTTC---------CEE-----EEEEEEEETTS-CEEEEEEEEET-TCCEEEE
T ss_pred             ----CCCc---------EEE-----EEEEEEEEecC-CCEEEEEEecC-cceeeeE
Confidence                0111         111     11234556788 99999999998 6654443

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.81  E-value=3.9e-19  Score=141.74  Aligned_cols=164  Identities=15%  Similarity=0.217  Sum_probs=112.2

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeC--CEEE---e------------------eCCeeEEEEccCCcCCCeEEEEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKD--GLVL---R------------------RNSDEVLVLDRVQREDAGMYQCH   77 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~~~~---~------------------~~~~~~l~i~~~~~~d~G~Y~C~   77 (371)
                      +.+.+|++++|.|.+.   +.+.+.|+|+  +...   .                  .....+|.|.+++.+|+|.|+|.
T Consensus        10 ~~v~~G~~v~L~C~~~---~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   86 (211)
T 3tv3_L           10 ASGSPGQSITISCTGT---SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCG   86 (211)
T ss_dssp             EEECTTCEEEEEEECC---CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred             EEEcCCCCEEEEEEEC---CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEE
Confidence            7899999999999665   7788999993  2111   0                  11456899999999999999999


Q ss_pred             EEcCCC--CeEEEEEEEEec---ceeeEecCCce-eeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcc
Q psy14542         78 VSADDD--SAQMSAQVILGG---ELVEIASSNQV-VVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDR  150 (371)
Q Consensus        78 ~~~~~~--~~~~~~~l~v~~---~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~  150 (371)
                      +.+..+  .....+.|.|..   .+|.+...+.. ....|+.++|.|.+.+.+ +.+.+.|+++|..+......    ..
T Consensus        87 ~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~----~~  162 (211)
T 3tv3_L           87 SLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVET----TT  162 (211)
T ss_dssp             EEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE----CC
T ss_pred             EecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCccc----CC
Confidence            998766  234446666662   33444433322 224799999999998753 24799999999987643110    01


Q ss_pred             cCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeee
Q psy14542        151 VQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLL  204 (371)
Q Consensus       151 ~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~  204 (371)
                      ......|         .+..  .+.|.|.++..+| .|.|+|.+.|. .+....
T Consensus       163 ~~~~~~~---------~~~~--~s~L~i~~~~~~d-~g~Y~C~v~~~-~~~~~~  203 (211)
T 3tv3_L          163 PSKQSNN---------KYAA--SSYLSLTPEQWKS-HRSYSCQVTHE-GSTVEK  203 (211)
T ss_dssp             CEECTTS---------SEEE--EEEEEECHHHHHH-SSCEEEEEEET-TEEEEE
T ss_pred             ceECCCC---------CEEE--EEEEEEcHHHhCC-CCeEEEEEEEC-CCCEEe
Confidence            1111222         2222  2578899999999 99999999998 554433

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.81  E-value=8.8e-19  Score=139.58  Aligned_cols=167  Identities=18%  Similarity=0.283  Sum_probs=111.9

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC--EEE---e------------------eCCeeEEEEccCCcC
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG--LVL---R------------------RNSDEVLVLDRVQRE   69 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~--~~~---~------------------~~~~~~l~i~~~~~~   69 (371)
                      +.. |.. +.+.+|++++|.|.+ .+.+.+.+.|+|++  ..+   .                  .....+|.|.+++.+
T Consensus         4 v~q-p~~-~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   80 (210)
T 1lk3_L            4 LTQ-PPA-LTVSPGEKLTISCKA-SESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEAD   80 (210)
T ss_dssp             EEC-CSE-EEECTTSCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EEC-CCc-EEEcCCCCEEEEeeC-CCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHH
Confidence            444 555 889999999999965 45566789999832  111   0                  013458999999999


Q ss_pred             CCeEEEEEEEcCCCCeE-EEEEEEEec--ceeeEecCC-ceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCee
Q psy14542         70 DAGMYQCHVSADDDSAQ-MSAQVILGG--ELVEIASSN-QVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDE  144 (371)
Q Consensus        70 d~G~Y~C~~~~~~~~~~-~~~~l~v~~--~~~~~~~~~-~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~  144 (371)
                      |+|.|+|.+.+..+... ....|.|..  .+|.+...+ ......|+.++|.|.+.+.+ .+..+.|+++|..+......
T Consensus        81 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~  160 (210)
T 1lk3_L           81 DTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLD  160 (210)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEE
T ss_pred             HCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceE
Confidence            99999999998765432 234566652  244444322 22235799999999998743 32489999999987644100


Q ss_pred             EEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        145 VLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       145 ~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                         .........|.|         ..  .+.|.|.++..+| .|.|+|.+.|.
T Consensus       161 ---~~~~~~~~~~~~---------~~--~s~L~i~~~~~~d-~G~Y~C~a~n~  198 (210)
T 1lk3_L          161 ---SVTDQDSKDSTY---------SM--SSTLSLTKADYES-HNLYTCEVVHK  198 (210)
T ss_dssp             ---EECCCCTTTCCE---------EE--EEEEEEEHHHHHT-CCEEEEEEECT
T ss_pred             ---ccCCccCCCCCE---------EE--EEEEEEChHHhcc-CCcEEEEEEec
Confidence               011111222222         21  2579999999999 99999999987

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.81  E-value=2.5e-19  Score=148.49  Aligned_cols=187  Identities=19%  Similarity=0.364  Sum_probs=118.0

Q ss_pred             eeeecCCcEEEEEEec---CCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeE-----eccceEE
Q psy14542        106 VVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHM-----LSSGELI  177 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~---~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~-----~~~~~l~  177 (371)
                      ..+.+|+.++|.|.+.   +.+. +.+.|++++...... ...+..........+.|     .++..+     ..+..|.
T Consensus        15 ~~v~~G~~v~L~C~~~~~~~~~~-~~v~W~k~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~r~~~~~~~~~~~~~L~   87 (268)
T 3mj6_A           15 LRVHVGESVLMGCVVQRTEEKHV-DRVDWLFSKDKDDAS-EYVLFYYSNLSVPTGRF-----QNRSHLVGDTFHNDGSLL   87 (268)
T ss_dssp             EEEETTCCEEECCBCCCSSCCCE-EEEEEEEESSSTTCC-EEEEEEETTEEEECGGG-----TTTEEECSCTTTTBCCEE
T ss_pred             eEEecCCcEEEEEEeecCCCCce-EEEEEEEeCCCCCce-EEEEEEcCCCcccCccc-----cCceEEeecCCCCEEEEE
Confidence            3458999999999997   4444 789999965422111 01111100000000000     122222     1236799


Q ss_pred             EEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEe---ecCCCCce
Q psy14542        178 IHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSA---QGNPLPTI  254 (371)
Q Consensus       178 i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~---~~~p~~~v  254 (371)
                      |.+++.+| +|.|+|.+.+. .+...... ...|.|..    ..|      .... +..|+.+.|.|.+   .+.|.+.+
T Consensus        88 I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~-~~~l~V~~----~~p------~~~~-v~~G~~v~L~C~~~~~~~~p~~~v  153 (268)
T 3mj6_A           88 LQDVQKAD-EGIYTCEIRLK-NESMVMKK-PVELWVLP----EEP------RDLR-VRVGDTTQMRCSIQSTEEKRVTKV  153 (268)
T ss_dssp             ECSCCGGG-CEEEEEEEEET-TCCCEEEE-EEEEEEEC----CCC------SEEE-EETTCCEEECCBCEESSSSCCCEE
T ss_pred             ECCCCHhH-CEEEEEEEEec-CCcceEEE-EEEEEEec----cCC------Cccc-cccCCcEEEEEEecCCCCCCccce
Confidence            99999999 99999999986 43332222 01444431    111      2333 8899999999999   56788999


Q ss_pred             EEEeCCccc-cc-----------------CC----ceE------EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542        255 KWYKQDSPV-EE-----------------SD----RIQ------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI  306 (371)
Q Consensus       255 ~W~~~~~~~-~~-----------------~~----~~~------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  306 (371)
                      .|++++... ..                 ..    ++.      ..++.|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus       154 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l  233 (268)
T 3mj6_A          154 NWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVL  233 (268)
T ss_dssp             EEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEE
Confidence            999954321 11                 01    111      124689999999999999999999999999999999


Q ss_pred             EEecCcc
Q psy14542        307 QYAHGKY  313 (371)
Q Consensus       307 ~v~~~p~  313 (371)
                      .|...++
T Consensus       234 ~V~~~~p  240 (268)
T 3mj6_A          234 HVVQDEF  240 (268)
T ss_dssp             EEECC--
T ss_pred             EEEcCCC
Confidence            9955443

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.81  E-value=1.6e-18  Score=138.23  Aligned_cols=167  Identities=16%  Similarity=0.268  Sum_probs=110.7

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCC--CCeeEEEeCC--EEE---e------------------eCCeeEEEEccCC
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRL--SSAKAWLKDG--LVL---R------------------RNSDEVLVLDRVQ   67 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~--~~~~~W~~~~--~~~---~------------------~~~~~~l~i~~~~   67 (371)
                      +.. |.. +.+.+|++++|.|.+.....  .+.+.|+|++  ..+   .                  .....+|.|.+++
T Consensus         4 v~~-p~~-~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   81 (212)
T 1q0x_L            4 VTQ-ESA-LTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQ   81 (212)
T ss_dssp             EEE-CSE-EEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             EEC-CCe-EeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCC
Confidence            444 555 88999999999996554332  4679999852  221   0                  0134589999999


Q ss_pred             cCCCeEEEEEEEcCCCCe-EEEEEEEEec---ceeeEecCCc-eeeecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeC
Q psy14542         68 REDAGMYQCHVSADDDSA-QMSAQVILGG---ELVEIASSNQ-VVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN  141 (371)
Q Consensus        68 ~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~---~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~  141 (371)
                      .+|+|.|.|.+.+..+.. .....|.|..   .+|.+...+. .....|+.++|.|.+.+.++ +..+.|++++..+...
T Consensus        82 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~  161 (212)
T 1q0x_L           82 TEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAG  161 (212)
T ss_dssp             GGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTT
T ss_pred             ccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCC
Confidence            999999999999865432 2234566631   3444443222 22257899999999988544 2489999999887644


Q ss_pred             CeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        142 SDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       142 ~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      ..    .........|.|         ..  .+.|.|..+..+| .|.|+|.|.|.
T Consensus       162 ~~----~~~~~~~~~g~~---------~~--~s~L~i~~~~~~d-~g~Y~C~a~n~  201 (212)
T 1q0x_L          162 ME----TTQPSKQSNNKY---------MA--SSYLTLTARAWER-HSSYSCQVTHE  201 (212)
T ss_dssp             EE----ECCCEECTTSCE---------EE--EEEEEEEHHHHTT-CCEEEEEEEET
T ss_pred             ee----cCCceeCCCCCE---------EE--EEEEEEcHHHccC-CCcEEEEEEeC
Confidence            11    111111122222         11  2578999999999 99999999987

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.80  E-value=1.5e-18  Score=138.72  Aligned_cols=182  Identities=20%  Similarity=0.264  Sum_probs=113.1

Q ss_pred             ceeeecCCcEEEEEEecCC------CCCceEEEeeCCEEeeeCCeeEEEEcc----cCcCCCeeEEEEEeCCceeEec--
Q psy14542        105 QVVVDVGHRIELHCRVSPK------RLSSAKAWLKDGLVLRRNSDEVLVLDR----VQREDAGMYQCHIEDGKYHMLS--  172 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~------~~~~~v~W~~~~~~~~~~~~~~~~~~~----~~~~~~g~y~~~~~~~~~~~~~--  172 (371)
                      ...+.+|++++|.|.+.+.      ...+.+.|+|++.....  ...+....    .....         .+++.+..  
T Consensus         9 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~--~~~~~~~~~~~~~~~~~---------~~r~~~~~~~   77 (214)
T 2zg1_A            9 SVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYY--AEVVATNNPDRRVKPET---------QGRFRLLGDV   77 (214)
T ss_dssp             EEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGG--CCBSEESCTTSCBCTTT---------TTTEEECSCG
T ss_pred             EEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcc--cceEecCCcccccCccc---------cCceEEeccC
Confidence            3445899999999999754      12378999997653110  00011100    00111         12333322  


Q ss_pred             ---cceEEEEEeecCCccceeEEEeeccccceeee-eeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec
Q psy14542        173 ---SGELIIHQVDESDRYRSYQCRGVNKLTGASLL-SVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG  248 (371)
Q Consensus       173 ---~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~-~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~  248 (371)
                         +..|.|.+++.+| +|.|.|.+.+. .+.... ......|.|....  .+|.+...   .. +.+|+.++|.|.+.+
T Consensus        78 ~~~~~sL~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~~~~~l~V~~~~--~~p~i~~~---~~-~~~G~~v~L~C~~~~  149 (214)
T 2zg1_A           78 QKKNCSLSIGDARMED-TGSYFFRVERG-RDVKYSYQQNKLNLEVTALI--EKPDIHFL---EP-LESGRPTRLSCSLPG  149 (214)
T ss_dssp             GGTBCCEEECSCCGGG-CEEEEEEEEET-TTEEEECCSSCEEEEEECCC--CCCEEC-----CC-CCTTCCEEEEEECTT
T ss_pred             CCCeEEEEEccCCHhh-CceEEEEEEcC-CCceeeecCCceEEEEecCC--CCCceecC---cc-ccCCCeEEEEEEecc
Confidence               3479999999999 99999999987 322111 0012256665321  24444331   12 678999999999976


Q ss_pred             C----CCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCc--eeEEEEE
Q psy14542        249 N----PLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQ  307 (371)
Q Consensus       249 ~----p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~  307 (371)
                      .    |.|.+.|++++..+....  ....+.|.|..+..+|+|.|+|.|.|..+..  ..++.|.
T Consensus       150 ~~~~~p~p~v~W~~~~~~~~~~~--~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~  212 (214)
T 2zg1_A          150 SCEAGPPLTFSWTGNALSPLDPE--TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLN  212 (214)
T ss_dssp             CCSCSSCCEEEEESSTTSSSCSS--CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECC
T ss_pred             CCCCCCCceEEEeCCCCccCCCC--ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEE
Confidence            4    789999999987643322  1346789999999999999999999987554  4444443

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.80  E-value=6.7e-19  Score=144.08  Aligned_cols=183  Identities=15%  Similarity=0.262  Sum_probs=111.6

Q ss_pred             ceeeecCCcEEEEEEecCCCCC----ceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeE------eccc
Q psy14542        105 QVVVDVGHRIELHCRVSPKRLS----SAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHM------LSSG  174 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~~----~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~------~~~~  174 (371)
                      ...+..|++++|.|.+.+.+.+    ..+.|++++......   .+.+.... .....|     .++..+      ..+.
T Consensus        12 ~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~---~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~   82 (248)
T 3pv7_A           12 TQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKE---VKVFEFFG-DHQEAF-----RPGAIVSPWRLKSGDA   82 (248)
T ss_dssp             EEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCE---EEEEEEES-SCEEES-----STTCBCCHHHHTTTBC
T ss_pred             CeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcc---eEEEEecC-Cccccc-----CCceEEEeccCCCCcE
Confidence            3345899999999999776551    259999964321110   00000000 000000     001110      1234


Q ss_pred             eEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-CCCC-
Q psy14542        175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLP-  252 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-  252 (371)
                      .|.|.+++.+| +|.|+|.+.+. .+......   .|.|.     .+|.+...+.. . +..|+.+.|.|.+.+ .|.+ 
T Consensus        83 sL~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~---~L~V~-----~~P~v~~~~~~-~-~~~~~~~~L~C~~~g~~P~pi  150 (248)
T 3pv7_A           83 SLRLPGIQLEE-AGEYRCEVVVT-PLKAQGTV---QLEVV-----ASPASRLLLDQ-V-GMKENEDKYMCESSGFYPEAI  150 (248)
T ss_dssp             CEEESSCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEE-----BCCEEEEECC----------CEEEEEEEEEBSSCC
T ss_pred             EEEeCCCCHHH-CeEEEEEEEeC-CccceeEE---EEEEe-----cCCceEEecCC-c-cccCCCcEEEEEEccEECCCe
Confidence            69999999999 99999999987 55555555   77777     56666655443 2 556778889999998 7888 


Q ss_pred             ceEEEeCCcccccCC----------------ceEEecceEEEeccCCCCCeEEEEEEEcCCCCc--eeEEEEEE
Q psy14542        253 TIKWYKQDSPVEESD----------------RIQRIGSSLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQY  308 (371)
Q Consensus       253 ~v~W~~~~~~~~~~~----------------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v  308 (371)
                      .+.|++++..+....                ......+.|.|.....+|+|.|+|.|.|..+..  ...+.|.|
T Consensus       151 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          151 NITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             EEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             EEEEEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence            999999997553221                111123468888889999999999999998874  45566666

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.80  E-value=6.2e-18  Score=131.96  Aligned_cols=173  Identities=16%  Similarity=0.234  Sum_probs=116.9

Q ss_pred             eEEEeCCCc-EEEeccCcEEEEEEecCCCCCC--eeEEEeCC----EEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542         12 SIEMSPSGQ-VVVDVGHRIELHCRVSPKRLSS--AKAWLKDG----LVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDS   84 (371)
Q Consensus        12 ~~~~~p~~~-~~~~~G~~v~l~C~~~~~~~~~--~~~W~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   84 (371)
                      .+.+.|... +.+.+|++++|.|.+  +.|.+  .|+|++.+    +.........|.|.+++.+|+|.|.|.+.+..+.
T Consensus         7 ~~~V~pp~~~v~v~~G~sv~L~C~a--~~p~P~~~i~W~~~~~~l~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~   84 (210)
T 1gsm_A            7 PLQVEPPEPVVAVALGASRQLTCRL--ACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT   84 (210)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEE--CCSSTTCEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             CEEEeCCCCceEEeCCCCEEEEEEC--CCCCCCcceEEeecccccCcEEecCCccEEEECccCcccCceEEEEEEeCCCc
Confidence            345556653 689999999999965  45555  99999854    2221226788999999999999999999998887


Q ss_pred             eEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCC-CC---CceEEEeeCCEEeeeCCeeEEEE---c-ccCcCCC
Q psy14542         85 AQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPK-RL---SSAKAWLKDGLVLRRNSDEVLVL---D-RVQREDA  156 (371)
Q Consensus        85 ~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~---~~~v~W~~~~~~~~~~~~~~~~~---~-~~~~~~~  156 (371)
                      ....+.|+|+..|..+...+. ....|+.+ |.|.+.+. |.   .++++|+|++..+.........+   . ..+....
T Consensus        85 ~~~~~~ltV~~~P~~~~i~~~-~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~  162 (210)
T 1gsm_A           85 FQHTVQLLVYAFPNQLTVSPA-ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED  162 (210)
T ss_dssp             EEEEEEEEEEBCCSEEEEESS-SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCC
T ss_pred             eEEEEEEEEEecCCCcEEccc-eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcc
Confidence            788899999944333333333 44678888 99999875 43   25899999999985432101011   0 0111112


Q ss_pred             eeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccc
Q psy14542        157 GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTG  200 (371)
Q Consensus       157 g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~  200 (371)
                      +.|         .+  .+.+.+.....+| .+.|+|.|.+...+
T Consensus       163 ~~~---------~v--ts~~~~~~~~~D~-~~~~tC~a~~~L~~  194 (210)
T 1gsm_A          163 VLF---------RV--TERWRLPPLGTPV-PPALYCQATMRLPG  194 (210)
T ss_dssp             CCE---------EE--EEEEECCCCCSSC-CSEEEEEEEEEETT
T ss_pred             eEE---------EE--EEEEeecCCcccC-CceEEEEEEeeCCC
Confidence            222         21  2456666666666 89999999998544

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.80  E-value=1.6e-18  Score=143.62  Aligned_cols=206  Identities=19%  Similarity=0.329  Sum_probs=116.6

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecC--CCCCCeeEEEeCCEEE-------e-------------e---------CCee
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSP--KRLSSAKAWLKDGLVL-------R-------------R---------NSDE   59 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~--~~~~~~~~W~~~~~~~-------~-------------~---------~~~~   59 (371)
                      +.+.+.|.. +.+.+|++++|.|.+..  +.+.+.+.|++++...       .             .         ..+.
T Consensus         6 ~~v~~~~~~-~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   84 (268)
T 3mj6_A            6 PGLTVSSPQ-LRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDG   84 (268)
T ss_dssp             ------CCE-EEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBC
T ss_pred             cccccCCCc-eEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEE
Confidence            456666776 89999999999996542  4566779999953210       0             0         0337


Q ss_pred             EEEEccCCcCCCeEEEEEEEcCCCCe--EEEEEEEEecceeeEecCCceeeecCCcEEEEEEe---cCCCCCceEEEeeC
Q psy14542         60 VLVLDRVQREDAGMYQCHVSADDDSA--QMSAQVILGGELVEIASSNQVVVDVGHRIELHCRV---SPKRLSSAKAWLKD  134 (371)
Q Consensus        60 ~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~---~~~~~~~~v~W~~~  134 (371)
                      +|.|.+++.+|+|.|+|.+.+..+..  ...+.|.|...     ......+.+|+.++|.|.+   .+.+. +.+.|+++
T Consensus        85 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~-----~p~~~~v~~G~~v~L~C~~~~~~~~p~-~~v~W~~~  158 (268)
T 3mj6_A           85 SLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPE-----EPRDLRVRVGDTTQMRCSIQSTEEKRV-TKVNWMFS  158 (268)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECC-----CCSEEEEETTCCEEECCBCEESSSSCC-CEEEEEEE
T ss_pred             EEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEecc-----CCCccccccCCcEEEEEEecCCCCCCc-cceEEEec
Confidence            89999999999999999999876554  34555555421     1123445899999999999   45565 89999994


Q ss_pred             CEEeeeCCeeEEEEcccC----cCCCeeEEEEEeCCceeE-----eccceEEEEEeecCCccceeEEEeeccccceeeee
Q psy14542        135 GLVLRRNSDEVLVLDRVQ----REDAGMYQCHIEDGKYHM-----LSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLS  205 (371)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~----~~~~g~y~~~~~~~~~~~-----~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~  205 (371)
                      +...... ...+....-.    ....+.|     ..+..+     ..+..|.|.+++.+| .|.|+|.+.|. .+.....
T Consensus       159 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~r~~~~~~~~~~~~~L~i~~v~~~D-~G~Y~C~a~n~-~g~~~~~  230 (268)
T 3mj6_A          159 SGSHTEE-ETVLSYDSNMRSGKFQSLGRF-----RNRVDLTGDISRNDGSIKLQTVKESD-QGIYTCSIYVG-KLESRKT  230 (268)
T ss_dssp             CTTCSSC-EEEEEEETTSSSCEEECSSTT-----TTTEEECSCGGGTBCCEEECSCCGGG-CEEEEEEEEET-TEEEEEE
T ss_pred             CCCCCcc-eeEEEecCCCCcccccccccc-----ccceEeeccCCCCeEEEEECcCChhh-CeEEEEEEEcC-CceEEEE
Confidence            3211111 0111110000    0000000     001111     234689999999999 99999999997 7776666


Q ss_pred             eccceeeeecchhccccceeeeeeeeeeeecCCe
Q psy14542        206 VNRGRLSLTENKRLLSAAKMFEKHRILNVKKDES  239 (371)
Q Consensus       206 ~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~  239 (371)
                      .   .|.|..    .+|.+...+.... +..|+.
T Consensus       231 ~---~l~V~~----~~p~~~~~p~~~~-~~~~q~  256 (268)
T 3mj6_A          231 I---VLHVVQ----DEFQRTISPTPPT-DKGQQG  256 (268)
T ss_dssp             E---EEEEEC----C-------------------
T ss_pred             E---EEEEEc----CCCeeeeCCCCCC-CCccee
Confidence            6   777743    3455555554444 444443

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.80  E-value=9.8e-19  Score=140.57  Aligned_cols=191  Identities=14%  Similarity=0.173  Sum_probs=116.2

Q ss_pred             ceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEEE
Q psy14542        105 QVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELII  178 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~i  178 (371)
                      ...+.+|++++|.|.+.+.+ ....+.|++.....  .......+.....+....+. ....+++.+..     +..|.|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~R~~~~~~~~~~~~~L~I   85 (222)
T 1q9r_B            9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGK--ALEWLGFIRNKANGYTTEYS-PSVKGRFTISRDNSQSILYLQM   85 (222)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTS--CCEEEEEECCGGGTTCEEEC-TTTBTTEEEEEETTTTEEEEEE
T ss_pred             ceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCC--CcEEEEEEccCCcccccccC-cccCCceEEEEECCCCeEEEEE
Confidence            34558999999999998764 13789999853100  00111111110000000000 00012333322     258999


Q ss_pred             EEeecCCccceeEEEeeccccc-----eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CCC
Q psy14542        179 HQVDESDRYRSYQCRGVNKLTG-----ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PLP  252 (371)
Q Consensus       179 ~~~~~~d~~g~y~C~~~~~~~~-----~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~  252 (371)
                      .+++.+| +|.|.|.+.+. .+     ......   .+.|.... ..+|.+........ +..|+.++|.|.+.|. |.|
T Consensus        86 ~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~~~~~---~l~V~~~~-~~~P~i~~~~~~~~-~~~g~~v~L~C~~~g~~P~p  158 (222)
T 1q9r_B           86 NTLRAED-SATYYCARDHD-GYYERFSYWGQGT---LVTVSAAK-TTPPSVYPLAPGSA-AQTNSMVTLGCLVKGYFPEP  158 (222)
T ss_dssp             CSCCGGG-CEEEEEEECCC-SSCCSCCCBCCCE---EEEECSSC-CBCCEEEEECCCSC-CCCSSEEEEEEEEEEEBSSC
T ss_pred             CcCCccc-CeEEEEEEecc-CCcccceEeCCce---EEEeccCC-CCCCeEEEcccccc-ccCCCcEEEEEEEccEECCC
Confidence            9999999 99999999986 32     111222   56665321 13455544333333 6689999999999985 888


Q ss_pred             -ceEEEeCCcccccCC-------ceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542        253 -TIKWYKQDSPVEESD-------RIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI  306 (371)
Q Consensus       253 -~v~W~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  306 (371)
                       .+.|+++|..+....       ......+.|.|..+..+| |.|+|.|.|..|.......|
T Consensus       159 ~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i  219 (222)
T 1q9r_B          159 VTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI  219 (222)
T ss_dssp             CEEEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             CEEEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEec
Confidence             999999987654211       011223468999999899 99999999999986655444

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.80  E-value=7.2e-19  Score=140.30  Aligned_cols=178  Identities=13%  Similarity=0.186  Sum_probs=113.2

Q ss_pred             ceeeecCCcEEEEEEecCCCC--CceEEEeeCC--EEeeeCCeeEEEEccc--CcCCCeeEEEEEeCCceeEe---ccce
Q psy14542        105 QVVVDVGHRIELHCRVSPKRL--SSAKAWLKDG--LVLRRNSDEVLVLDRV--QREDAGMYQCHIEDGKYHML---SSGE  175 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~--~~~v~W~~~~--~~~~~~~~~~~~~~~~--~~~~~g~y~~~~~~~~~~~~---~~~~  175 (371)
                      ...+.+|+.++|.|.+.+.+.  .+.+.|++++  ..+..     +.....  .....         +++...   .+..
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~-----~~~~~~~~~~~~~---------~r~~~~~~~~~~~   74 (212)
T 1q0x_L            9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTG-----LIGGTNNRAPGVP---------ARFSGSLIGDKAA   74 (212)
T ss_dssp             EEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEE-----EEETTTEECTTCC---------TTEEEEEETTEEE
T ss_pred             eEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceE-----EEEcCcccCCccc---------ccEEEEeeCCEEE
Confidence            344589999999999988763  3689999853  22110     000000  00011         122222   1247


Q ss_pred             EEEEEeecCCccceeEEEeecccccee-eeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCC-CC-
Q psy14542        176 LIIHQVDESDRYRSYQCRGVNKLTGAS-LLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNP-LP-  252 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~-  252 (371)
                      |.|.+++.+| +|.|.|.+.+. .+.. ....   .+.|..... .+|.+........ +..|+.++|.|.+.+.+ ++ 
T Consensus        75 L~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~---~l~V~~~~~-~~P~v~~~~~~~~-~~~g~~v~L~C~~~g~~p~~~  147 (212)
T 1q0x_L           75 LTITGAQTED-EAIYFCALWSN-NKLVFGGGT---KLTVLGQPK-SSPTVTLFPPSSE-ELSTAKATLVCTITDFYPGVV  147 (212)
T ss_dssp             EEESSCCGGG-CEEEEEEEECS-SCEEECCCE---EEEECCSCC-BCCEEEEECCCHH-HHTTTEEEEEEEEEEEBSSCC
T ss_pred             EEECCCCccC-CEEEEEEEecC-chhhcCCCe---EEEEecCCC-CCCeeEEeCCCHH-HccCCcEEEEEEEEEEeCCCe
Confidence            9999999999 99999999987 4321 1222   455532111 3555554443333 45789999999998854 43 


Q ss_pred             ceEEEeCCcccccCCce---E-------EecceEEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542        253 TIKWYKQDSPVEESDRI---Q-------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ  303 (371)
Q Consensus       253 ~v~W~~~~~~~~~~~~~---~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  303 (371)
                      .+.|+++|..+..+...   .       ...+.|.|..+..+|+|.|+|.|.|.......+
T Consensus       148 ~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~  208 (212)
T 1q0x_L          148 TVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKT  208 (212)
T ss_dssp             EEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEE
T ss_pred             EEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeee
Confidence            89999999877654211   1       122368899999999999999999987654433

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.80  E-value=1.1e-18  Score=139.69  Aligned_cols=165  Identities=14%  Similarity=0.184  Sum_probs=109.6

Q ss_pred             CCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeCC--EEE---e------------------eCCeeEEEEccCCcCCCe
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--LVL---R------------------RNSDEVLVLDRVQREDAG   72 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~--~~~---~------------------~~~~~~l~i~~~~~~d~G   72 (371)
                      |.. +.+.+|++++|.|.+..+. +.+.+.|+|++  ..+   .                  .....+|.|.+++.+|+|
T Consensus         7 p~~-~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   85 (216)
T 2xzc_L            7 PPS-VSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEA   85 (216)
T ss_dssp             CSE-EEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCc-EEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCE
Confidence            555 7899999999999744444 35789999943  111   0                  013458999999999999


Q ss_pred             EEEEEEEcCCCC--eEEEEEEEEec--ceeeEecC-CceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEE
Q psy14542         73 MYQCHVSADDDS--AQMSAQVILGG--ELVEIASS-NQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVL  146 (371)
Q Consensus        73 ~Y~C~~~~~~~~--~~~~~~l~v~~--~~~~~~~~-~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~  146 (371)
                      .|+|.+.+..+.  ......|.|..  .+|.+... +......|+.++|.|.+.+.+ .+..+.|++++..+.....   
T Consensus        86 ~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~---  162 (216)
T 2xzc_L           86 DYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ---  162 (216)
T ss_dssp             EEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEE---
T ss_pred             EEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCee---
Confidence            999999987651  12234555542  33444432 222224688999999998854 3248999999998764310   


Q ss_pred             EEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        147 VLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       147 ~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      ..........|.|         ..  .+.|.|..+..+| .|.|+|.+.|.
T Consensus       163 ~~~~~~~~~~g~~---------~~--~s~L~i~~~~~~d-~g~Y~C~a~n~  201 (216)
T 2xzc_L          163 ESVTEQDSKDSTY---------SL--SSTLTLSKADYEK-HKVYACEVTHQ  201 (216)
T ss_dssp             EEECCCCTTTCCE---------EE--EEEEEEEHHHHTT-CCEEEEEEECT
T ss_pred             EecCcccCCCCCE---------EE--EEEEEECHHHhCC-CCcEEEEEEcC
Confidence            0111112222322         22  2578999999999 99999999987

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.80  E-value=3.4e-19  Score=142.12  Aligned_cols=180  Identities=13%  Similarity=0.153  Sum_probs=115.8

Q ss_pred             CCceeeecCCcEEEEEEecCCCCCceEEEeeCC--EEeeeCCeeEEEEcccC---cCCCeeEEEEEeCCceeEeccceEE
Q psy14542        103 SNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG--LVLRRNSDEVLVLDRVQ---REDAGMYQCHIEDGKYHMLSSGELI  177 (371)
Q Consensus       103 ~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~---~~~~g~y~~~~~~~~~~~~~~~~l~  177 (371)
                      .+...+.+|+.++|.|.+.  +. +.+.|+++.  ..+.      +.+....   ....+.|....      ...+..|.
T Consensus         7 ~~~~~v~~G~~v~L~C~~~--~~-~~v~W~k~~~~~~~~------~~~~~~~~~~~~~~~r~~~~~------~~~~~~L~   71 (211)
T 3tv3_L            7 PPSASGSPGQSITISCTGT--SN-NFVSWYQQHAGKAPK------LVIYDVNKRPSGVPDRFSGSK------SGNTASLT   71 (211)
T ss_dssp             CSEEEECTTCEEEEEEECC--CS-SCEEEEEECTTSCCE------EEEBTTTBCCTTSCTTEEEEE------ETTEEEEE
T ss_pred             CceEEEcCCCCEEEEEEEC--CC-CeEEEEEECCCCCCE------EEEEEecccCCCCcCcEEEEc------cCCEEEEE
Confidence            3434458999999999998  44 799999842  2111      1111100   00111121111      11235799


Q ss_pred             EEEeecCCccceeEEEeeccccc--eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC--CCCc
Q psy14542        178 IHQVDESDRYRSYQCRGVNKLTG--ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN--PLPT  253 (371)
Q Consensus       178 i~~~~~~d~~g~y~C~~~~~~~~--~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~--p~~~  253 (371)
                      |.+++.+| +|.|+|.+.+. .+  ......   .|.|... ...+|.+...+.... +..|+.+.|.|.+.+.  |.+.
T Consensus        72 I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~~---~l~V~~~-~~~~P~v~~~~~~~~-~~~g~~v~l~C~~~g~~p~~~~  144 (211)
T 3tv3_L           72 VSGLQTDD-EAVYYCGSLVG-NWDVIFGGGT---KLTVLGQ-PKAAPSVTLFPPSSE-ELQANKATLVCLISDFYPGAVT  144 (211)
T ss_dssp             EESCCGGG-CEEEEEEEEET-TTEEEECCCE---EEEECCS-CCBCCEEEEECCCHH-HHHTTCEEEEEEEEEEBSSCCE
T ss_pred             ECCCChhH-CEEEEEEEecC-CCceeECCCc---eEEEeCC-CCcCCeeEecCCchh-hhcCCCeEEEEEeeeecCCCeE
Confidence            99999999 99999999987 54  222223   5555521 114556655554443 4579999999999885  3578


Q ss_pred             eEEEeCCcccccCCc----------eEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542        254 IKWYKQDSPVEESDR----------IQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL  304 (371)
Q Consensus       254 v~W~~~~~~~~~~~~----------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  304 (371)
                      +.|+++|..+..+..          .....+.|.|..+..+|+|.|+|.|.|..+....++
T Consensus       145 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~  205 (211)
T 3tv3_L          145 VAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  205 (211)
T ss_dssp             EEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEE
T ss_pred             EEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeec
Confidence            999999987754211          111224688999999999999999999987665554

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.80  E-value=3.5e-19  Score=141.43  Aligned_cols=169  Identities=11%  Similarity=0.173  Sum_probs=111.5

Q ss_pred             ceEEEeCCCcEE-EeccCcEEEEEEecCCC--C-CCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCe
Q psy14542         11 LSIEMSPSGQVV-VDVGHRIELHCRVSPKR--L-SSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAG   72 (371)
Q Consensus        11 ~~~~~~p~~~~~-~~~G~~v~l~C~~~~~~--~-~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G   72 (371)
                      |.+.+.|+.... +.+|++++|.|.+....  | ...+.|+|++..+...              ....|.|.+++.+|+|
T Consensus         2 p~v~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G   81 (207)
T 2vol_A            2 SSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGK   81 (207)
T ss_dssp             CEEEEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTC
T ss_pred             CcEEEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCC
Confidence            556666665334 88999999999765332  3 3589999998776421              1347999999999999


Q ss_pred             EEEEEEEcCCCCeE--EEEEE--EEecceeeEecCCcee-eecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeEE
Q psy14542         73 MYQCHVSADDDSAQ--MSAQV--ILGGELVEIASSNQVV-VDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEVL  146 (371)
Q Consensus        73 ~Y~C~~~~~~~~~~--~~~~l--~v~~~~~~~~~~~~~~-~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~  146 (371)
                      .|+|.+.+..+...  ..+.+  .+. .+|.+...+... ...|+.++|.|.+.+.++ +..++|+++|..+.....   
T Consensus        82 ~Y~C~a~~~~~~~~~~~~v~~~~~~~-~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~---  157 (207)
T 2vol_A           82 EFKCRVNSAAFPAPIEKTISKTKGRP-KAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKN---  157 (207)
T ss_dssp             CEEEEEECTTCSSCEEEEECCCCCCC-BCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEE---
T ss_pred             EEEEEEEccCCCCceEEEeccCCCCC-cCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCccc---
Confidence            99999998877542  33333  233 344443322221 135899999999988544 359999999997643211   


Q ss_pred             EEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        147 VLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       147 ~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                        ........|         .+.+.  +.|.|.....+| .|.|+|.+.|.
T Consensus       158 --~~~~~~~~g---------~~~~~--s~l~i~~~~~~~-~g~ytC~a~n~  194 (207)
T 2vol_A          158 --TQPIMDTDG---------SYFVY--SKLNVQKSNWEA-GNTFTCSVLHE  194 (207)
T ss_dssp             --CCCEECTTS---------CEEEE--EEEEEEHHHHSS-CCEEEEEEECT
T ss_pred             --CCceECCCC---------CEEEE--EEEEECHHHcCC-CCEEEEEEECC
Confidence              000111222         22222  456777766778 99999999997

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.80  E-value=3.3e-18  Score=138.92  Aligned_cols=171  Identities=20%  Similarity=0.304  Sum_probs=116.2

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC-----EEEe------------------eCCeeEEEEccC
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG-----LVLR------------------RNSDEVLVLDRV   66 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~-----~~~~------------------~~~~~~l~i~~~   66 (371)
                      .+.+...|.. +.+.+|++++|.|.+. +.+.+.+.|+|++     ..+.                  .....+|.|.++
T Consensus        24 ~~~v~~~p~~-~~v~~G~~v~L~C~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v  101 (237)
T 3sob_L           24 DIQMTQSPSS-LSASVGDRVTITCRAS-QDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSL  101 (237)
T ss_dssp             CCCEEEECSE-EEEETTCCEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             cceEEeCCCe-EEEeCCCcEEEEEecC-CCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCC
Confidence            4566676776 8999999999999654 4478889999832     1110                  114678999999


Q ss_pred             CcCCCeEEEEEEEcCCCCe-EEEEEEEEe--cceeeEecCCc-eeeecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeC
Q psy14542         67 QREDAGMYQCHVSADDDSA-QMSAQVILG--GELVEIASSNQ-VVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN  141 (371)
Q Consensus        67 ~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~--~~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~  141 (371)
                      +.+|+|.|+|.+.+..+.. .....|.|.  ..+|.+...+. .....|+.++|.|.+.+.++ .+.++|++++..+...
T Consensus       102 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~  181 (237)
T 3sob_L          102 QPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGN  181 (237)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSS
T ss_pred             ChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCc
Confidence            9999999999998765432 223345543  24444443222 22246889999999987433 4899999999887643


Q ss_pred             CeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        142 SDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       142 ~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      .   +..........|.|.         .  .+.|.|.....+| .|.|+|.+.|.
T Consensus       182 ~---~~~~~~~~~~~g~~~---------~--~s~L~i~~~~~~d-~g~Y~C~a~n~  222 (237)
T 3sob_L          182 S---QESVTEQDSKDSTYS---------L--SSTLTLSKADYEK-HKVYACEVTHQ  222 (237)
T ss_dssp             E---EEEECCCCTTTCCEE---------E--EEEEEEEHHHHTT-CCEEEEEEECT
T ss_pred             e---eecccccccCCCcEE---------E--EEEEEEcHHHccC-CCcEEEEEeeC
Confidence            1   011122222333332         2  2578999999999 99999999998

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.80  E-value=1.8e-18  Score=138.12  Aligned_cols=177  Identities=12%  Similarity=0.208  Sum_probs=114.4

Q ss_pred             eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcc--cCcCCCeeEEEEEeCCceeEe---ccceEEEEE
Q psy14542        106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDR--VQREDAGMYQCHIEDGKYHML---SSGELIIHQ  180 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~g~y~~~~~~~~~~~~---~~~~l~i~~  180 (371)
                      ..+.+|+.++|.|.+.+.+. +.+.|++....   .....+....  ......         +++...   .+..|.|.+
T Consensus        11 ~~v~~G~~v~L~C~~~~~~~-~~v~W~k~~~~---~~~~~~~~~~~~~~~~~~---------~r~~~~~~~~~~~L~I~~   77 (213)
T 3r06_A           11 LPASLGDRVTINCQASQDIS-NYLNWYQQKPG---KAPKLLIYYTNKLADGVP---------SRFSGSGSGRDSSFTISS   77 (213)
T ss_dssp             EEECTTCCEEEEEEESSCCT-TCEEEEEECTT---SCCEEEEETTTEECTTCC---------TTEEEEEETTEEEEEESS
T ss_pred             EEecCCCcEEEEEEeCCCcC-ceEEEEEECCC---CCcEEEEEEcCcCCCCCC---------CcEEEeccCCEEEEEECC
Confidence            44589999999999998865 89999984310   0000011100  000111         222222   235799999


Q ss_pred             eecCCccceeEEEeeccccc-eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCC--CceEEE
Q psy14542        181 VDESDRYRSYQCRGVNKLTG-ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL--PTIKWY  257 (371)
Q Consensus       181 ~~~~d~~g~y~C~~~~~~~~-~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~  257 (371)
                      ++.+| +|.|+|.+.+. .+ ......   .+.|..  ...+|.+...+.... +..|+.+.|.|.+.+.++  +.+.|+
T Consensus        78 v~~~D-~G~Y~C~~~~~-~~~~~~~~~---~l~V~~--~~~~p~v~~~~~~~~-~~~~~~v~l~C~~~g~~p~~~~v~W~  149 (213)
T 3r06_A           78 LESED-IGSYYCQQYYN-YPWTFGPGT---KLEIKR--ADAKPTVSIFPPSSE-QLGTGSATLVCFVNNFYPKDINVKWK  149 (213)
T ss_dssp             CCGGG-CSEEEEEECSS-SSCEECCCE---EEEECC--CCBCCEEEEECCCHH-HHTTTEEEEEEEEEEEBSSCEEEEEE
T ss_pred             CCccc-CEEEEEecccC-CceEEcCCc---eEEEec--cCCCceeeeeCCCce-ecCCCCcEEEEEEeeecCCceEEEEE
Confidence            99999 99999999886 32 222223   555521  125666666555444 567888999999988654  489999


Q ss_pred             eCCcccccCC-c---e-------EEecceEEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542        258 KQDSPVEESD-R---I-------QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ  303 (371)
Q Consensus       258 ~~~~~~~~~~-~---~-------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  303 (371)
                      ++|..+..+. .   .       ....+.|.|.....+|+|.|+|.|.|........
T Consensus       150 k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~~~~  206 (213)
T 3r06_A          150 VDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTAAIV  206 (213)
T ss_dssp             ETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEE
T ss_pred             ECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCcceE
Confidence            9998776531 0   0       1112368888888899999999999987654433

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.80  E-value=1.6e-18  Score=142.39  Aligned_cols=173  Identities=19%  Similarity=0.253  Sum_probs=114.6

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCC----CCeeEEEeCC--EEE----------e-----------eCCeeEE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRL----SSAKAWLKDG--LVL----------R-----------RNSDEVL   61 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~----~~~~~W~~~~--~~~----------~-----------~~~~~~l   61 (371)
                      .++.+...|.. +.+.+|++++|.|.+....+    .+.+.|+|++  ..+          .           .....+|
T Consensus        37 ~~~~~~~~p~~-~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L  115 (254)
T 2c1o_A           37 RELVMTQSPLT-LSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTL  115 (254)
T ss_dssp             -CCCEEEECSE-EEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEE
T ss_pred             eceeEEeCCce-EEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEE
Confidence            35667777777 89999999999996544332    4789999832  211          0           0134589


Q ss_pred             EEccCCcCCCeEEEEEEEcCCCCeE-EEEEEEEec--ceeeEecCC-ceeeecCCcEEEEEEecCCCC-CceEEEeeCCE
Q psy14542         62 VLDRVQREDAGMYQCHVSADDDSAQ-MSAQVILGG--ELVEIASSN-QVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGL  136 (371)
Q Consensus        62 ~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v~~--~~~~~~~~~-~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~  136 (371)
                      .|.+++.+|+|.|+|.+.+..+... ....|.|..  .+|.+...+ ......|+.++|.|.+.+.++ ++.++|++++.
T Consensus       116 ~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~  195 (254)
T 2c1o_A          116 KISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGS  195 (254)
T ss_dssp             EESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSS
T ss_pred             EECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCC
Confidence            9999999999999999998754322 223455542  244444322 222246889999999987443 35799999998


Q ss_pred             EeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        137 VLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      .+......   .........|.|         ..  .+.|.|.++..+| .|.|+|.|.|.
T Consensus       196 ~l~~~~~~---~~~~~~~~~g~~---------~~--~~~L~i~~~~~~d-~G~Y~C~a~n~  241 (254)
T 2c1o_A          196 ERQNGVLN---SWTDQDSKDSTY---------SM--SSTLTLTKDEYER-HNSYTCEATHK  241 (254)
T ss_dssp             EECTTEEE---EECCCCTTTCCE---------EE--EEEEEEEHHHHHT-CCEEEEEEECT
T ss_pred             cccCccee---ccccccCCCCcE---------EE--EEEEEeccccccC-CCeEEEEEEcC
Confidence            87654110   111111122222         21  2689999999999 99999999997

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.80  E-value=7e-18  Score=137.94  Aligned_cols=191  Identities=16%  Similarity=0.224  Sum_probs=118.0

Q ss_pred             CceeeecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeEEEEcc------cCcCCCeeEEEEEeCCceeEec----
Q psy14542        104 NQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEVLVLDR------VQREDAGMYQCHIEDGKYHMLS----  172 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~------~~~~~~g~y~~~~~~~~~~~~~----  172 (371)
                      +...+.+|++++|.|.+.+.+. .+.+.|+++....  .....+....      ......+         ++.+..    
T Consensus        10 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~   78 (247)
T 2ghw_B           10 GGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGK--GLEWVAVISYDGSNKYYADSVKG---------RFTISRDNSK   78 (247)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTS--CEEEEEEECTTSSCEEECTTTTT---------TEEEEEETTT
T ss_pred             CCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCC--ceEEEEEEecCCCceeeCccccC---------cEEEEEeCCC
Confidence            4455689999999999988762 3789999843100  0000111110      0001112         333222    


Q ss_pred             -cceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchh----------ccccceeeeeeeeeeeecCCeEE
Q psy14542        173 -SGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKR----------LLSAAKMFEKHRILNVKKDESVI  241 (371)
Q Consensus       173 -~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~----------~~~p~~~~~~~~~~~~~~g~~~~  241 (371)
                       ...|.|.+++.+| +|.|+|.+.+. .+...... ...|.|.....          ..++.+...+.... +.+|+.++
T Consensus        79 ~~~~L~I~~v~~~D-~G~Y~C~~~n~-~~~~~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~G~~v~  154 (247)
T 2ghw_B           79 NTLYLQMNSLRAED-TAVYYCARDRS-YYLDYWGQ-GTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLS-LSPGERAT  154 (247)
T ss_dssp             TEEEEEECSCCGGG-CEEEEEEEEET-TEEEEECC-CEEEEECSCC------------CCCCEEEECSEEE-ECTTSCEE
T ss_pred             CEEEEEECcCCHHH-CEEEEEeeecc-CCccccCC-ceEEEEecccccccccccCCCCcceEEEccCCEEE-ecCCCcEE
Confidence             2479999999999 99999999886 22211111 12566653210          12344444444555 89999999


Q ss_pred             EEEEeecCCCCceEEEe--CCcccc------------cCCceEE----ecceEEEeccCCCCCeEEEEEEEcCCCCc-ee
Q psy14542        242 LPCSAQGNPLPTIKWYK--QDSPVE------------ESDRIQR----IGSSLSISHVEESDSGVWNCVANNSEGQD-KM  302 (371)
Q Consensus       242 l~C~~~~~p~~~v~W~~--~~~~~~------------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~  302 (371)
                      |.|.+.+.|.+.+.|++  ++..+.            ...++..    ...+|.|.++..+|+|.|+|.|.|..+.. ..
T Consensus       155 L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~  234 (247)
T 2ghw_B          155 LSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQ  234 (247)
T ss_dssp             EEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECC
T ss_pred             EEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcC
Confidence            99999999989999999  555431            1234432    12469999999999999999999865432 22


Q ss_pred             EEEEEEe
Q psy14542        303 QLFIQYA  309 (371)
Q Consensus       303 ~~~l~v~  309 (371)
                      ...|.|.
T Consensus       235 ~t~l~V~  241 (247)
T 2ghw_B          235 GTKVEVK  241 (247)
T ss_dssp             CEEEEEC
T ss_pred             CEEEEEC
Confidence            3455554

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.80  E-value=1.9e-18  Score=140.35  Aligned_cols=183  Identities=14%  Similarity=0.239  Sum_probs=116.8

Q ss_pred             eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcc--cCcCCCeeEEEEEeCCceeEeccceEEEEEeec
Q psy14542        106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDR--VQREDAGMYQCHIEDGKYHMLSSGELIIHQVDE  183 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~  183 (371)
                      ..+.+|++++|.|.+.+.+. +.+.|++....   .....+....  ......+.|....      ...+..|.|.+++.
T Consensus        34 ~~v~~G~~v~L~C~~~~~~~-~~v~W~k~~~~---~~~~~~~~~~~~~~~~~~~r~~~~~------~~~~~~L~I~~v~~  103 (237)
T 3sob_L           34 LSASVGDRVTITCRASQDVS-TAVAWYQQKPG---KAPKLLIYSASFLYSGVPSRFSGSG------SGTDFTLTISSLQP  103 (237)
T ss_dssp             EEEETTCCEEEEEEESSCCT-TCEEEEEECTT---SCCEEEEETTTEECTTCCTTEEEEE------ETTEEEEEESSCCG
T ss_pred             EEEeCCCcEEEEEecCCCCC-ceEEEEEECCC---CCCEEEEEeccccCCCCCCcEEEEc------CCCEEEEEECCCCh
Confidence            44589999999999988765 89999984310   0000011100  0011112222111      01335799999999


Q ss_pred             CCccceeEEEeeccccc-eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-CC-CCceEEEeCC
Q psy14542        184 SDRYRSYQCRGVNKLTG-ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NP-LPTIKWYKQD  260 (371)
Q Consensus       184 ~d~~g~y~C~~~~~~~~-~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~~~v~W~~~~  260 (371)
                      +| +|.|+|.+.+. .+ ......   .+.|..  ...+|.+........ +..|+.+.|.|.+.+ .| .+.+.|+++|
T Consensus       104 ~D-~G~Y~C~~~~~-~~~~~~~~~---~l~V~~--~~~~p~v~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~~v~W~k~g  175 (237)
T 3sob_L          104 ED-FATYYCQQSYT-TPPTFGQGT---KVEIKR--TVAAPSVFIFPPSDE-QLKSGTASVVCLLNNFYPREAKVQWKVDN  175 (237)
T ss_dssp             GG-CEEEEEEECSS-SSCEECCCE---EEEEEC--CCBCCEEEEECCCHH-HHHHTEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             hh-CeEEEEeeccC-CceEEcCcE---EEEEec--CCCCCceEEeCCChh-hccCCceEEEEEEcccCCCceEEEEEECC
Confidence            99 99999999876 33 122222   555543  225666655444433 556889999999987 45 5899999999


Q ss_pred             cccccCC-----------ceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542        261 SPVEESD-----------RIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI  306 (371)
Q Consensus       261 ~~~~~~~-----------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  306 (371)
                      ..+..+.           ......+.|.|.....+|+|.|+|+|.|.......+..+
T Consensus       176 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~  232 (237)
T 3sob_L          176 ALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSF  232 (237)
T ss_dssp             EECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEE
T ss_pred             CCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCceeeee
Confidence            8876431           111123468899999999999999999998765544443

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.79  E-value=1.2e-19  Score=145.38  Aligned_cols=171  Identities=12%  Similarity=0.185  Sum_probs=112.7

Q ss_pred             cccceEEEeCCCcEE--EeccCcEEEEEEecCCC--C-CCeeEEEeCCEEEeeC--------------CeeEEEEccCCc
Q psy14542          8 KSSLSIEMSPSGQVV--VDVGHRIELHCRVSPKR--L-SSAKAWLKDGLVLRRN--------------SDEVLVLDRVQR   68 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~--~~~G~~v~l~C~~~~~~--~-~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~   68 (371)
                      ..+|.+.+.|+. ..  +.+|++++|.|.+....  | .+.+.|+|++..+...              ....|.|.+++.
T Consensus         7 ~~~p~v~~~pp~-~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   85 (218)
T 2rgs_A            7 EGGPSVFIFPPN-IKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDW   85 (218)
T ss_dssp             --CCEEEEECCC-HHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHH
T ss_pred             CCCCEEEEECcC-HHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHc
Confidence            346778888877 44  78999999999766432  3 4789999999776432              234799999999


Q ss_pred             CCCeEEEEEEEcCCCCe--EEEEEE--EEecceeeEecCCceee-ecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCC
Q psy14542         69 EDAGMYQCHVSADDDSA--QMSAQV--ILGGELVEIASSNQVVV-DVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNS  142 (371)
Q Consensus        69 ~d~G~Y~C~~~~~~~~~--~~~~~l--~v~~~~~~~~~~~~~~~-~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~  142 (371)
                      +|+|.|+|.+.+..+..  ...+.+  .+. .+|.+...+.... ..|+.++|.|.+.+. |.+..++|+++|..+....
T Consensus        86 ~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~-~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~  164 (218)
T 2rgs_A           86 MSGKEFKCKVNNKDLPSPIERTISKIKGLV-RAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYK  164 (218)
T ss_dssp             HTTCCEEEEEEETTCSSCEEEEECCCCCCC-BCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEE
T ss_pred             CCCCeEEEEEECCcCCCcceEEEeecCCCC-CCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCce
Confidence            99999999999876654  233222  223 3444433222211 359999999999984 5435999999998764321


Q ss_pred             eeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        143 DEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       143 ~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      .     ........|         .+.+.  +.|.|.....+| .|.|+|.+.|.
T Consensus       165 ~-----~~~~~~~~g---------t~~~~--s~l~v~~~~~~d-~g~YtC~a~n~  202 (218)
T 2rgs_A          165 D-----TAPVLDSDG---------SYFIY--SKLNMKTSKWEK-TDSFSCNVRHE  202 (218)
T ss_dssp             E-----CCCEECTTS---------CEEEE--EEEEEEHHHHHH-CSCEEEEEECT
T ss_pred             e-----cccEECCCC---------CEEEE--EEEEECHHHcCC-CCeEEEEEEcC
Confidence            1     000011222         22222  456676666667 89999999997

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.79  E-value=1.6e-18  Score=142.56  Aligned_cols=199  Identities=13%  Similarity=0.118  Sum_probs=119.1

Q ss_pred             CceeeecCCcEEEEEEecCCC-CCceEEEeeCC--EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cce
Q psy14542        104 NQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGE  175 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~  175 (371)
                      +...+.+|++++|.|.+.+.+ ..+.+.|++++  ..+.    ..+.....   ....|. ....+++.+..     ...
T Consensus         8 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~----~~~~~~~~---~~~~~~-~~~~~R~~~~~~~~~~~~~   79 (257)
T 1f3r_B            8 GPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPE----WMGRMWYD---GYTAYN-SALKSRLSISRDTSKNQVF   79 (257)
T ss_dssp             CCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCE----EEEEECSS---SCEEEC-SSSSTTEEEEEETTTTEEE
T ss_pred             CCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcE----EEEEEecC---CceeeC-cccCCcEEEEEECCCCEEE
Confidence            344568999999999998874 23789999852  1110    01111100   000000 00012333322     258


Q ss_pred             EEEEEeecCCccceeEEEeeccccc------eeeeeeccceeeeecchh----------ccccceeeeeeeeeeeecCCe
Q psy14542        176 LIIHQVDESDRYRSYQCRGVNKLTG------ASLLSVNRGRLSLTENKR----------LLSAAKMFEKHRILNVKKDES  239 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~~~~~~------~~~~~~~~~~l~v~~~~~----------~~~p~~~~~~~~~~~~~~g~~  239 (371)
                      |.|.+++.+| +|.|.|.+.+. .|      ..........|.|.....          ..++.+...+.... +.+|++
T Consensus        80 L~I~~v~~~D-sG~Y~C~a~n~-~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-v~~G~~  156 (257)
T 1f3r_B           80 LKMNSLQTDD-TGTYYCTRDLY-GGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLS-ASVGDR  156 (257)
T ss_dssp             EEEESCCTTC-CEEEEEEEESS-SSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEEC-CCTTCC
T ss_pred             EEECCCCccc-CEEEEEEEccc-ccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEE-EcCCCC
Confidence            9999999999 99999999987 32      111100112566663210          01223333344445 889999


Q ss_pred             EEEEEEeecCCCCceEEEe--CCcccc------------cCCceEE----ecceEEEeccCCCCCeEEEEEEEcCCCCce
Q psy14542        240 VILPCSAQGNPLPTIKWYK--QDSPVE------------ESDRIQR----IGSSLSISHVEESDSGVWNCVANNSEGQDK  301 (371)
Q Consensus       240 ~~l~C~~~~~p~~~v~W~~--~~~~~~------------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  301 (371)
                      ++|.|.+.+.+.+.+.|++  ++..+.            ...++..    ...+|.|.++..+|+|.|+|.|.|......
T Consensus       157 v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g  236 (257)
T 1f3r_B          157 VTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFG  236 (257)
T ss_dssp             EEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEEC
T ss_pred             EEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCeEC
Confidence            9999999998888999999  555431            1234432    123799999999999999999999751122


Q ss_pred             eEEEEEEecCcc
Q psy14542        302 MQLFIQYAHGKY  313 (371)
Q Consensus       302 ~~~~l~v~~~p~  313 (371)
                      ....|.|...+.
T Consensus       237 ~gt~l~V~~~~~  248 (257)
T 1f3r_B          237 AGTKLELKAAEQ  248 (257)
T ss_dssp             CCCEECCSSSCC
T ss_pred             CCEEEEEeCCCc
Confidence            234555655444

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.79  E-value=7.4e-18  Score=138.53  Aligned_cols=200  Identities=15%  Similarity=0.192  Sum_probs=119.7

Q ss_pred             cCCceeeecCCcEEEEEEecCCCC-CceEEEeeCC--EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----c
Q psy14542        102 SSNQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDG--LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----S  173 (371)
Q Consensus       102 ~~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~  173 (371)
                      ..+...+.+|++++|.|.+.+.+. .+.+.|++..  ..+    ...+.....  ..... ......+++.+..     .
T Consensus         8 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~----~~~~~~~~~--~~~~~-~~~~~~~r~~~~~~~~~~~   80 (256)
T 3umt_A            8 QSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSL----EWIGGINPN--NGGTS-YNQKFKGKAILTVDKSSST   80 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCE----EEEEEECTT--TCCEE-ECGGGTTTEEEEEEGGGTE
T ss_pred             ccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCc----EEEEEEecc--CCccc-ccccccceEEEEEecCCCE
Confidence            334455689999999999987651 2789999732  111    111111100  00000 0000012333332     2


Q ss_pred             ceEEEEEeecCCccceeEEEeeccc---cceeeeeeccceeeeecch-----------hccccceeeeeeeeeeeecCCe
Q psy14542        174 GELIIHQVDESDRYRSYQCRGVNKL---TGASLLSVNRGRLSLTENK-----------RLLSAAKMFEKHRILNVKKDES  239 (371)
Q Consensus       174 ~~l~i~~~~~~d~~g~y~C~~~~~~---~~~~~~~~~~~~l~v~~~~-----------~~~~p~~~~~~~~~~~~~~g~~  239 (371)
                      ..|.|.+++.+| +|.|.|.+.+..   .+......   .|.|....           ...+|.+...+.... +.+|++
T Consensus        81 ~~L~I~~v~~~D-sG~Y~C~~~~~~~~~~~~~~~~~---~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-v~~G~~  155 (256)
T 3umt_A           81 AYLELRSLTSED-SAVYYCARDDRYPAWFAYWGQGT---TVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLS-ASLGER  155 (256)
T ss_dssp             EEEEECSCCGGG-CEEEEEEECCSTTCCSCEECCCE---EEEECC---------------CCCCEEEECSEEE-ECTTCC
T ss_pred             EEEEECCCCccc-CEEEEEEEccCCCccccEECCCE---EEEEcCCCccccCcccCCCCccccEEEcCCCeEE-EECCCC
Confidence            359999999999 999999998761   11222223   56666320           001455555565566 999999


Q ss_pred             EEEEEEeecCCCCceEEEeCC--cccc------------cCCceEEe----cceEEEeccCCCCCeEEEEEEEcCCCCc-
Q psy14542        240 VILPCSAQGNPLPTIKWYKQD--SPVE------------ESDRIQRI----GSSLSISHVEESDSGVWNCVANNSEGQD-  300 (371)
Q Consensus       240 ~~l~C~~~~~p~~~v~W~~~~--~~~~------------~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-  300 (371)
                      ++|.|.+.+.+.+.+.|+++.  ..+.            ...++...    ..+|.|.++..+|+|.|.|.|.|..+.. 
T Consensus       156 v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~f  235 (256)
T 3umt_A          156 VSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTF  235 (256)
T ss_dssp             EEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEE
T ss_pred             EEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEE
Confidence            999999999888899999852  2211            12333321    2359999999999999999999865443 


Q ss_pred             eeEEEEEEecCcc
Q psy14542        301 KMQLFIQYAHGKY  313 (371)
Q Consensus       301 ~~~~~l~v~~~p~  313 (371)
                      .....|.|..++.
T Consensus       236 g~gt~L~V~~~~~  248 (256)
T 3umt_A          236 GGGTKLEIKRAAA  248 (256)
T ss_dssp             CCCEEEEEC----
T ss_pred             CCCEEEEEECCCc
Confidence            3346677776655

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.79  E-value=1.3e-18  Score=137.61  Aligned_cols=176  Identities=13%  Similarity=0.170  Sum_probs=112.4

Q ss_pred             eeecCCcEEEEEEecCCC---CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeE--eccceEEEEEe
Q psy14542        107 VVDVGHRIELHCRVSPKR---LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHM--LSSGELIIHQV  181 (371)
Q Consensus       107 ~~~~g~~v~l~C~~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~--~~~~~l~i~~~  181 (371)
                      .+.+|++++|.|.+....   +.+.+.|++++..+..........       ...|     .++..+  ..+..|.|.++
T Consensus         5 ~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~-------~~~~-----~~r~~~~~~~~~~L~I~~v   72 (201)
T 1dr9_A            5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNI-------WPEY-----KNRTIFDITNNLSIVILAL   72 (201)
T ss_dssp             EEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEE-------CHHH-----HTTEEEESTTTTEEEECSC
T ss_pred             EEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceee-------cCcc-----cceeEEccCCCcEEEEecc
Confidence            347899999999986432   227899999987653211000000       0000     011111  12368999999


Q ss_pred             ecCCccceeEEEeeccccceee-----eeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEee-cCCCCceE
Q psy14542        182 DESDRYRSYQCRGVNKLTGASL-----LSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQ-GNPLPTIK  255 (371)
Q Consensus       182 ~~~d~~g~y~C~~~~~~~~~~~-----~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~  255 (371)
                      +.+| +|.|+|.+.+. .+...     ...   .|.|....  ..|.+...    . ...|+.+.|.|.+. |.|.|.+.
T Consensus        73 ~~~D-~G~Y~C~~~~~-~g~~~~~~~~~~~---~l~V~~~~--~~p~~~~~----~-~~~g~~~~l~C~~~~g~P~p~i~  140 (201)
T 1dr9_A           73 RPSD-EGTYECVVLKY-EKDAFKREHLAEV---TLSVKADF--PTPSISDF----E-IPTSNIRRIICSTSGGFPEPHLS  140 (201)
T ss_dssp             CGGG-CEEEEEEEEEC-CTTSCEEEEEEEE---EEEEECCC--CCCEEEEE----E-CSSTTEEEEEEEEEEESSCEEEE
T ss_pred             cchh-CeEEEEEEEcC-CCCccccccccEE---EEEEcCCC--CCCceEec----c-CCCCCeEEEEEecCCccCCCEEE
Confidence            9999 99999999997 43322     233   55555321  12333221    1 35588999999995 89999999


Q ss_pred             EEeCCcccccCCceE-Ee-c-ceE---EEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542        256 WYKQDSPVEESDRIQ-RI-G-SSL---SISHVEESDSGVWNCVANNSEGQDKMQLFI  306 (371)
Q Consensus       256 W~~~~~~~~~~~~~~-~~-~-~~l---~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  306 (371)
                      |+++|..+....... .. + +.+   .+..+..+|.|.|+|.|.|..|..+..+.+
T Consensus       141 W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~  197 (201)
T 1dr9_A          141 WLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW  197 (201)
T ss_dssp             EEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred             EEECCEECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence            999998877543222 21 2 222   223456789999999999999998877665

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.79  E-value=1.6e-18  Score=138.96  Aligned_cols=189  Identities=16%  Similarity=0.264  Sum_probs=115.1

Q ss_pred             CCceeeecCCcEEEEEEecCCC-CCceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cc
Q psy14542        103 SNQVVVDVGHRIELHCRVSPKR-LSSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SG  174 (371)
Q Consensus       103 ~~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~  174 (371)
                      ++...+.+|++++|.|.+.+.+ ..+.+.|+++  +..+..    ...+...  .....+ .....+++.+..     +.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~----~~~~~~~--~~~~~~-~~~~~~R~~~~~~~~~~~~   79 (219)
T 1c1e_H            7 SGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKL----MGWINPY--TGESTF-ADDFKGRFAFFLETSATTA   79 (219)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEE----EEEECSS--SCCEEE-CGGGCSSEEEEEEGGGTEE
T ss_pred             CCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEE----EEEEecC--CCceEe-CcccCCcEEEEEecCCCEE
Confidence            3344568999999999998765 2379999986  322210    0111000  000000 000012333322     25


Q ss_pred             eEEEEEeecCCccceeEEEeeccccce----eeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-C
Q psy14542        175 ELIIHQVDESDRYRSYQCRGVNKLTGA----SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-N  249 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~----~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~  249 (371)
                      .|.|.+++.+| +|.|.|.+.+. .+.    .....   .+.|..... .+|.+........ +..|+.+.|.|.+.| .
T Consensus        80 ~L~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~~~~---~l~V~~~~~-~~P~i~~~~~~~~-~~~g~~v~L~C~~~g~~  152 (219)
T 1c1e_H           80 YLQINNLKNED-MATYFCARGTT-IVRAMDYWGQGT---SLTVSSAKT-TPPSVYPLAPGSA-AQTNSMVTLGCLVKGYF  152 (219)
T ss_dssp             EEEECSCCGGG-CEEEEEEEEET-TTTEEEEECCCE---EEEECCCCC-BCCEEEEECCCSS-SCCSSEEEEEEEEEEEB
T ss_pred             EEEECCCCccc-CEEEEEEEecc-CcccceeecCce---EEEEecCCC-CCCeEEEecCccc-cccCCeEEEEEEccccc
Confidence            89999999999 99999999987 321    11222   566663211 2355544333333 678999999999998 8


Q ss_pred             CCC-ceEEEeCCcccccC--Cce-----EEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542        250 PLP-TIKWYKQDSPVEES--DRI-----QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI  306 (371)
Q Consensus       250 p~~-~v~W~~~~~~~~~~--~~~-----~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  306 (371)
                      |.| .+.|++++..+...  ...     ....+.|.|..... |.|.|+|.|.|..+.......|
T Consensus       153 P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~~~~~i  216 (219)
T 1c1e_H          153 PEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVDKKI  216 (219)
T ss_dssp             SSCCEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEEEEEEC
T ss_pred             CCCeEEEEEeCCcccceEecCCcccCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCccEEEec
Confidence            988 99999998764211  110     11224688855444 5699999999998876555444

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.79  E-value=9.2e-18  Score=137.80  Aligned_cols=195  Identities=16%  Similarity=0.220  Sum_probs=119.8

Q ss_pred             CCceeeecCCcEEEEEEecCCC-CCceEEEeeCC--EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cc
Q psy14542        103 SNQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SG  174 (371)
Q Consensus       103 ~~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~  174 (371)
                      ++...+.+|++++|.|.+.+.+ ..+.+.|++++  ..+.    .........  ....+ .....+++.+..     ..
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~----~l~~~~~~~--~~~~~-~~~~~~R~~~~~~~~~~~~   79 (256)
T 1nqb_A            7 SGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLE----WIGRIDPNS--GGTKY-NEKFKSKATLTVDKPSSTA   79 (256)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEE----EEEEECTTT--CCEEE-CGGGTTTEEEEEETTTTEE
T ss_pred             CCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcE----EEEEEecCC--Cceee-CcccCCeEEEEEecCCCEE
Confidence            3445568999999999998775 23799999842  2211    001110000  00000 000012333322     25


Q ss_pred             eEEEEEeecCCccceeEEEeeccccce--eeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCC
Q psy14542        175 ELIIHQVDESDRYRSYQCRGVNKLTGA--SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP  252 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~--~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~  252 (371)
                      .|.|.+++.+| +|.|.|.+.+. .+.  .........|.|.     .+|.+...+.... +..|++++|.|.+.+.|.+
T Consensus        80 ~L~I~~v~~~D-sG~Y~C~~~n~-~g~~~~~~~~~~~~L~V~-----~~~~v~~~p~~~~-v~~G~~v~L~C~~~~~~~~  151 (256)
T 1nqb_A           80 YMQLSSLTSED-SAVYYCARYDY-YGSSYFDYWGQGTTVTVS-----SDIELTQTPLSLP-VSLGDQASISCRSSQSIVH  151 (256)
T ss_dssp             EEEECSCCGGG-CEEEEEEECCT-TSSSSCSEECCCEEEEEC-----CCCCEEEECSEEE-ECTTCCEEEEEEESSCCBC
T ss_pred             EEEECcCChhh-CEEEEEEEeec-cCccceeEEcCceeeeec-----ccccEEecCcEEE-EecCCcEEEEeEecCcccc
Confidence            79999999999 99999999987 442  1111111256666     4555555555555 8999999999999988765


Q ss_pred             -----ceEEEe--CCcccc------------cCCceEE----ecceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEE
Q psy14542        253 -----TIKWYK--QDSPVE------------ESDRIQR----IGSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQY  308 (371)
Q Consensus       253 -----~v~W~~--~~~~~~------------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v  308 (371)
                           .+.|++  ++..+.            ...++..    ...+|.|.++..+|+|.|+|.|.|..+.. .....|.|
T Consensus       152 ~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V  231 (256)
T 1nqb_A          152 SNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEI  231 (256)
T ss_dssp             TTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred             cccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEE
Confidence                 899999  555431            1234432    12479999999999999999999854432 22345666


Q ss_pred             ecCc
Q psy14542        309 AHGK  312 (371)
Q Consensus       309 ~~~p  312 (371)
                      ..++
T Consensus       232 ~~~~  235 (256)
T 1nqb_A          232 KRAA  235 (256)
T ss_dssp             CC--
T ss_pred             ECCC
Confidence            5443

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.79  E-value=6.3e-19  Score=146.15  Aligned_cols=217  Identities=13%  Similarity=0.165  Sum_probs=109.9

Q ss_pred             CCcCCCeEEEEEEEcCCCCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeE
Q psy14542         66 VQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV  145 (371)
Q Consensus        66 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~  145 (371)
                      .+..|.+.|.|.+.+..+.......+.|.      .......+.+|++++|.|.+.+ +. ..+.|+|....  ......
T Consensus         3 ~~~~~~~~y~~~~~~~~g~~~~~~~~~v~------~~p~~v~v~~G~~v~L~C~~~~-~~-~~v~W~k~~~~--~~~~~~   72 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGGSGGGGGMKVI------QTPRYLVKGQGQKAKMRCIPEK-GH-PVVFWYQQNKN--NEFKFL   72 (270)
T ss_dssp             -------------------------CCCE------EECSEEEEETTSCEEEEEECCT-TC-CEEEEEEECTT--CCEEEE
T ss_pred             chhhhHHHHHHHHhccCCccccccceeEE------eCCCeEEEcCCCCEEEEEEecC-CC-ceEEEEEECCC--CCcEEE
Confidence            45779999999998876654433333332      1112234589999999999865 44 79999983210  000000


Q ss_pred             EEEcccCcCCCeeEEEEEeCC-ceeEe----ccceEEEEEeecCCccceeEEEeeccc---cceeeeeeccceeeeecch
Q psy14542        146 LVLDRVQREDAGMYQCHIEDG-KYHML----SSGELIIHQVDESDRYRSYQCRGVNKL---TGASLLSVNRGRLSLTENK  217 (371)
Q Consensus       146 ~~~~~~~~~~~g~y~~~~~~~-~~~~~----~~~~l~i~~~~~~d~~g~y~C~~~~~~---~~~~~~~~~~~~l~v~~~~  217 (371)
                      +...+     ..........+ ++.+.    .+..|.|.+++.+| +|.|.|.+.+..   ........   .+.|....
T Consensus        73 ~~~~~-----~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D-~G~Y~C~~~~~~~~~~~~~~~~~---~l~V~~~~  143 (270)
T 3qib_D           73 INFQN-----QEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGD-SALYLCASSLNWSQDTQYFGPGT---RLLVLEDL  143 (270)
T ss_dssp             EEEET-----TEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGG-CEEEEEEEESCTTCCCCEECCCE---EEEEESCS
T ss_pred             EEECC-----CCceecCCccCCcEEEEeCCCcEEEEEECCCCHhH-CeEEEEEEecCCCccceEECCcE---EEEEcccc
Confidence            11000     00000000000 23222    13579999999999 999999998641   11111222   55555311


Q ss_pred             -hccccceeeeeeeeeeeecCCeEEEEEEeec-CCCC-ceEEEeCCcccccCCce---------------EEecceEEEe
Q psy14542        218 -RLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLP-TIKWYKQDSPVEESDRI---------------QRIGSSLSIS  279 (371)
Q Consensus       218 -~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~---------------~~~~~~l~i~  279 (371)
                       ...+|.+.........+..|+.++|.|.+.+ .|.+ .+.|+++|..+....+.               ....+.|.|.
T Consensus       144 ~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~  223 (270)
T 3qib_D          144 KNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVS  223 (270)
T ss_dssp             TTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEE
T ss_pred             ccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEc
Confidence             1124544433222111556999999999988 6666 79999999877543211               1122457888


Q ss_pred             ccCCCC-CeEEEEEEEcCCCCce
Q psy14542        280 HVEESD-SGVWNCVANNSEGQDK  301 (371)
Q Consensus       280 ~~~~~d-~G~Y~C~a~n~~g~~~  301 (371)
                      ....+| +|.|+|.|.|......
T Consensus       224 ~~~~~d~~g~YtC~v~~~~l~~~  246 (270)
T 3qib_D          224 ATFWQNPRNHFRCQVQFYGLSEN  246 (270)
T ss_dssp             HHHHHSTTCEEEEEEEECCBCTT
T ss_pred             HHHhccCCCeEEEEEEecCCCCc
Confidence            887777 9999999999876543

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.78  E-value=1.9e-18  Score=139.04  Aligned_cols=163  Identities=16%  Similarity=0.234  Sum_probs=107.7

Q ss_pred             EEEeccCcEEEEEEecCCCCCC---eeEEEeCCEEEeeC--------------------------------CeeEEEEcc
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSS---AKAWLKDGLVLRRN--------------------------------SDEVLVLDR   65 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~---~~~W~~~~~~~~~~--------------------------------~~~~l~i~~   65 (371)
                      +.+..|++++|.|.+... +.+   .+.|+|++..+...                                .+.+|.|.+
T Consensus        11 V~~~~G~~v~L~C~~~~~-~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   89 (225)
T 4fmk_A           11 VRGRLGGTVELPCHLLPP-TTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRG   89 (225)
T ss_dssp             EEEETTSCEEECCEECSS-CCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECS
T ss_pred             EEEecCCCEEEEEEEECC-CCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEcc
Confidence            678999999999976543 333   48999976433110                                346799999


Q ss_pred             CCcCCCeEEEEEEEcCCCCeE-EEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCee
Q psy14542         66 VQREDAGMYQCHVSADDDSAQ-MSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE  144 (371)
Q Consensus        66 ~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~  144 (371)
                      ++.+|+|.|+|.+.+..+... ....+.+...+.............++.+.+.|.+.+.++++.+.|++++..+......
T Consensus        90 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~~~  169 (225)
T 4fmk_A           90 LRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDTQE  169 (225)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEEEE
T ss_pred             CCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccCCcce
Confidence            999999999999988766543 3444555423333333333334677888888887655444899999987654432110


Q ss_pred             EEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeee
Q psy14542        145 VLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLL  204 (371)
Q Consensus       145 ~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~  204 (371)
                             .....         +.+..  .+.|.|.++..+| +|.|+|.|.|. .+....
T Consensus       170 -------~~~~~---------~~~~~--~s~L~i~~~~~~d-~g~YtC~a~N~-~~~~~~  209 (225)
T 4fmk_A          170 -------PGIQA---------GTVTI--ISRYSLVPVGRAD-GVKVTCRVEHE-SFEEPI  209 (225)
T ss_dssp             -------ECSST---------TCEEE--EEEEEECCCGGGT-TCEEEEEEECT-TCSSCE
T ss_pred             -------EEecC---------CCEEE--EEEEEEeeCCHHH-CCEEEEEEEcC-CCCeEE
Confidence                   00111         22222  2579999999999 99999999998 554433

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.78  E-value=8.7e-18  Score=136.54  Aligned_cols=170  Identities=18%  Similarity=0.317  Sum_probs=108.9

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--CEEE-----------------------e--eCCeeEEEEcc
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--GLVL-----------------------R--RNSDEVLVLDR   65 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~~~~-----------------------~--~~~~~~l~i~~   65 (371)
                      +...|.. +.+.+|++++|.|.  .+.+.+.+.|+|+  +...                       .  .....+|.|.+
T Consensus         3 v~q~p~~-~~v~~G~~v~L~C~--~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~   79 (238)
T 2p1y_A            3 VTQSPRN-KVAVTGGKVTLSCN--QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILEL   79 (238)
T ss_dssp             EEEECSE-EEEETTCCEEEEEE--ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESS
T ss_pred             ceECccc-eEEeCCCEEEEEee--cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEec
Confidence            4555666 88999999999996  4567889999994  1110                       0  00345899999


Q ss_pred             CCcCCCeEEEEEEEcCCCCe-----EEEEEEEEeccee-----------eEecCCc-eeeecCCcEEEEEEecCCCCCce
Q psy14542         66 VQREDAGMYQCHVSADDDSA-----QMSAQVILGGELV-----------EIASSNQ-VVVDVGHRIELHCRVSPKRLSSA  128 (371)
Q Consensus        66 ~~~~d~G~Y~C~~~~~~~~~-----~~~~~l~v~~~~~-----------~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~  128 (371)
                      ++.+|+|.|.|.+.+..+..     .....|.|...++           .+...+. ..+.+|++++|.|.+.+.+. +.
T Consensus        80 v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~-~~  158 (238)
T 2p1y_A           80 ATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAF-DY  158 (238)
T ss_dssp             CCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTC-CE
T ss_pred             CCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCC-Cc
Confidence            99999999999999865421     1234566653322           3343333 34589999999999998877 89


Q ss_pred             EEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe-----ccceEEEEEeecCCccceeEEEeecc
Q psy14542        129 KAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML-----SSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       129 v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~-----~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      +.|+|++...  .....+......   .     ...++++.+.     ....|.|.+++.+| +|.|+|.+.|.
T Consensus       159 i~W~k~~~~~--~~~~~~~~~~~~---~-----~~~~~r~~~~~~~~~~~~~L~I~~v~~~D-~G~Y~C~a~n~  221 (238)
T 2p1y_A          159 FPWYQQFPGE--GPALLISILSVS---D-----KKEDGRFTIFFNKREKKLSLHIADSQPGD-SATYFCAAIDT  221 (238)
T ss_dssp             EEEEEECTTS--CCEEEEEEETTC---S-----EEEETTEEEEEETTTTEEEEEETTCCGGG-CEEEEEEEEET
T ss_pred             EEEEEECCCC--CCEEEEEEccCC---C-----cccCCceEEEecCCCCeEEEEEcCCCHHH-CEEEEEEEeeC
Confidence            9999964100  000111110000   0     0001233332     12579999999999 99999999986

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.78  E-value=1.5e-19  Score=144.21  Aligned_cols=181  Identities=13%  Similarity=0.183  Sum_probs=112.9

Q ss_pred             ceeeecCCcEEEEEEecCCCCCceEEEeeCC--EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe---ccceEEEE
Q psy14542        105 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDG--LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML---SSGELIIH  179 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~---~~~~l~i~  179 (371)
                      ...+.+|+.++|.|.+.+.+. +.+.|+++.  ..+.      +.+........+      ..+++.+.   ....|.|.
T Consensus         8 ~~~v~~G~~v~L~C~~~~~~~-~~v~W~k~~~g~~~~------~~~~~~~~~~~~------~~~r~~~~~~~~~~~L~I~   74 (212)
T 1nfd_E            8 SASVTVGETVKITCSGDQLPK-NFAYWFQQKSDKNIL------LLIYMDNKRPSG------IPERFSGSTSGTTATLTIS   74 (212)
T ss_dssp             EEEEETTSCCCEEEEETTGGG-SCCEEEEECTTCCEE------EEEBTTTBCCTT------SCTTEEEEEETTEEEEEET
T ss_pred             eEEEeCCCcEEEEEecCCCCC-CeEEEEEECCCCCcE------EEEEeccccCCC------ccccEEEEeeCCEEEEEEC
Confidence            344589999999999877765 689999853  2211      001000000000      01122222   22479999


Q ss_pred             EeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CC-CceEEE
Q psy14542        180 QVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PL-PTIKWY  257 (371)
Q Consensus       180 ~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~  257 (371)
                      +++.+| +|.|+|.+.+...+...... ...+.|.... ..+|.+........ +..|+.+.|.|.+.|. |+ +.+.|+
T Consensus        75 ~v~~~D-~G~Y~C~~~n~~~~~~~~~~-~~~l~V~~~~-~~~p~v~~~~~~~~-~~~g~~v~L~C~~~g~~p~~~~v~W~  150 (212)
T 1nfd_E           75 GAQPED-EAAYYCLSSYGDNNDLVFGS-GTQLTVLRGP-KSSPKVTVFPPSPE-ELRTNKATLVCLVNDFYPGSATVTWK  150 (212)
T ss_dssp             TCCGGG-CSEEEEEEEETTTTEEEECC-CEEEEEECCC-CBCCEEECCCCCHH-HHHTTEECCCEEEEEEBSSCCEEEEE
T ss_pred             cCCccc-CEEEEEEEEcccCcccccCC-ceEEEEccCC-CCCCEEEeeCCchH-hccCCceEEEEEEEeeECCccEEEEE
Confidence            999999 99999999963122211111 1145553211 13455554333333 5679999999999986 54 799999


Q ss_pred             eCCcccccCCce---------EEecceEEEeccCCCCCeEEEEEEEcCCCCcee
Q psy14542        258 KQDSPVEESDRI---------QRIGSSLSISHVEESDSGVWNCVANNSEGQDKM  302 (371)
Q Consensus       258 ~~~~~~~~~~~~---------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  302 (371)
                      ++|..+......         ....+.|.|.++..+|+|.|+|.|.|..+....
T Consensus       151 k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  204 (212)
T 1nfd_E          151 ANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVEK  204 (212)
T ss_dssp             ETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCCC
T ss_pred             ECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceEEE
Confidence            999877544221         112356899999999999999999999876433

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.78  E-value=3.1e-18  Score=137.07  Aligned_cols=184  Identities=13%  Similarity=0.202  Sum_probs=112.8

Q ss_pred             ceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe---ccceEEEEE
Q psy14542        105 QVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML---SSGELIIHQ  180 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~---~~~~l~i~~  180 (371)
                      ...+.+|++++|.|.+.+.+ ..+.+.|++++...    ...+.+........+      ..+++...   .+..|.|.+
T Consensus         9 ~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~----~~~~~~~~~~~~~~~------~~~r~~~~~~~~~~~L~I~~   78 (216)
T 2xzc_L            9 SVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGT----APKLLIYDNNKRPSG------IPDRFSGSKSGTSATLGITG   78 (216)
T ss_dssp             EEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTS----CCEEEEBTTTBCCTT------CCTTEEEEEETTEEEEEECS
T ss_pred             cEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCC----CcEEEEEecCccCCC------CCCceEEeccCCEEEEEECC
Confidence            34458999999999964433 23789999854200    000111100000000      01122222   124799999


Q ss_pred             eecCCccceeEEEeeccccc--eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-CCCC-ceEE
Q psy14542        181 VDESDRYRSYQCRGVNKLTG--ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLP-TIKW  256 (371)
Q Consensus       181 ~~~~d~~g~y~C~~~~~~~~--~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W  256 (371)
                      ++.+| +|.|.|.+.+. .+  ......   .+.|...  ..+|.+........ ...|+.++|.|.+.| .|.+ .+.|
T Consensus        79 v~~~D-~G~Y~C~~~~~-~~~~~~~~~~---~l~V~~~--~~~P~v~~~~~~~~-~~~g~~v~L~C~~~g~~P~~~~v~W  150 (216)
T 2xzc_L           79 LQTGD-EADYYCGTWDS-SLNPVFGGGT---KLEIKRT--VAAPSVFIFPPSDE-QLKSGTASVVCLLNNFYPREAKVQW  150 (216)
T ss_dssp             CCGGG-CEEEEEEEECT-TSCEEEBCCE---EEEECCC--CBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCCEEEE
T ss_pred             CCccc-CEEEEEEEEeC-CCcceECCCE---EEEEcCC--CCCCceEEeCCChh-hccCCcEEEEEEEEeEcCCceEEEE
Confidence            99999 99999999987 43  112222   4555421  13455554333222 346889999999988 5554 8999


Q ss_pred             EeCCcccccC-Cc---eE-------EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542        257 YKQDSPVEES-DR---IQ-------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI  306 (371)
Q Consensus       257 ~~~~~~~~~~-~~---~~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  306 (371)
                      +++|..+..+ ..   ..       ...+.|.|..+..+|+|.|+|.|.|..........+
T Consensus       151 ~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~i  211 (216)
T 2xzc_L          151 KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSF  211 (216)
T ss_dssp             EETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEE
T ss_pred             EECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCceEEec
Confidence            9999887654 11   00       112368999999999999999999988765444433

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.78  E-value=9.1e-19  Score=140.79  Aligned_cols=168  Identities=18%  Similarity=0.261  Sum_probs=112.5

Q ss_pred             EEEeccCcEEEEEEecCCC----CCCeeEEEeCCEEE-----------eeC--------------CeeEEEEccCCcCCC
Q psy14542         21 VVVDVGHRIELHCRVSPKR----LSSAKAWLKDGLVL-----------RRN--------------SDEVLVLDRVQREDA   71 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~----~~~~~~W~~~~~~~-----------~~~--------------~~~~l~i~~~~~~d~   71 (371)
                      +.+.+|++++|.|.+....    ....+.|++++...           ...              ...+|.|.+++.+|+
T Consensus         5 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~   84 (222)
T 4i0k_A            5 VVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDE   84 (222)
T ss_dssp             CCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGC
T ss_pred             EEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccC
Confidence            6789999999999654321    22679999976322           000              267899999999999


Q ss_pred             eEEEEEEEcCCCCeEEEEEEEEec--ceeeEecCCceeeecCCcEEEEEEe-cCCCCCceEEEee-CCEEeeeCCeeEEE
Q psy14542         72 GMYQCHVSADDDSAQMSAQVILGG--ELVEIASSNQVVVDVGHRIELHCRV-SPKRLSSAKAWLK-DGLVLRRNSDEVLV  147 (371)
Q Consensus        72 G~Y~C~~~~~~~~~~~~~~l~v~~--~~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~~v~W~~-~~~~~~~~~~~~~~  147 (371)
                      |.|+|.+.+.. .....+.|.|..  ..+.+...+...+.+|+.++|.|.+ .+.|. +.+.|++ ++..+.........
T Consensus        85 G~Y~C~~~~~~-~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~-~~v~W~~~~~~~~~~~~~~~~~  162 (222)
T 4i0k_A           85 GSYTCFVSIQD-FDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPE-AEVFWKDGQGVPLTGNVTTSQM  162 (222)
T ss_dssp             SCEEEEEEECC-CCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSC-CEEEEECTTSCBCCSEEEEEEE
T ss_pred             EEEEEEEEeCC-CceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCC-CeEEEEcCCCccCCCCcceeEE
Confidence            99999999753 344455566652  2355665555556789999999999 66666 8999998 44433321110000


Q ss_pred             EcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542        148 LDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT  214 (371)
Q Consensus       148 ~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~  214 (371)
                           ....|         .+     ..|.|.++..+| .|.|+|.+.|. .+......   .+.|.
T Consensus       163 -----~~~~~---------~~-----~~l~i~~v~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V~  205 (222)
T 4i0k_A          163 -----ANERG---------LF-----DVHSVLRVVLGA-NGTYSCLVRNP-VLQQDAHG---SVTIT  205 (222)
T ss_dssp             -----ECTTS---------CE-----EEEEEEEEECCT-TCEEEEEEEET-TTTEEEEE---EEECC
T ss_pred             -----cCCCC---------eE-----EEEEEEEEEeCC-CCEEEEEEECC-CCCCceEE---EEEEe
Confidence                 00111         11     347899999999 99999999999 77777666   78777

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.78  E-value=5e-18  Score=139.20  Aligned_cols=171  Identities=18%  Similarity=0.259  Sum_probs=114.5

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCC-----CCeeEEEeCC--E---EEe------------------eCCeeEE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRL-----SSAKAWLKDG--L---VLR------------------RNSDEVL   61 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-----~~~~~W~~~~--~---~~~------------------~~~~~~l   61 (371)
                      ++.+...|.. +.+.+|++++|.|.+. +.+     .+.+.|+|++  .   .+.                  .....+|
T Consensus        34 ~~~v~~~p~~-~~v~~G~~v~L~C~~~-~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L  111 (252)
T 3bkj_L           34 DVLMTQTPLS-LPVNLGEQASISCRSS-QSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTL  111 (252)
T ss_dssp             CCCEEEECSE-EEECTTSCEEEEEEES-SCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEE
T ss_pred             ccEEEeCCce-EEEeCCCcEEEEEEcC-CCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEE
Confidence            4566666776 8899999999999654 444     5789999953  1   111                  0134589


Q ss_pred             EEccCCcCCCeEEEEEEEcCCCCe-EEEEEEEEec--ceeeEecCC-ceeeecCCcEEEEEEecCCCC-CceEEEeeCCE
Q psy14542         62 VLDRVQREDAGMYQCHVSADDDSA-QMSAQVILGG--ELVEIASSN-QVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGL  136 (371)
Q Consensus        62 ~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~--~~~~~~~~~-~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~  136 (371)
                      .|.+++.+|+|.|.|.+.+..+.. .....|.|..  .+|.+...+ .....+|+.++|.|.+.+.++ +..++|++++.
T Consensus       112 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~  191 (252)
T 3bkj_L          112 RISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGS  191 (252)
T ss_dssp             EESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             EECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCe
Confidence            999999999999999998765432 1224566652  234444322 222246899999999988543 24899999998


Q ss_pred             EeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        137 VLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      .+.....   ..........|.|         ..  .+.|.|.++..+| .|.|+|.+.|.
T Consensus       192 ~~~~~~~---~~~~~~~~~~g~~---------~~--~s~L~i~~~~~~d-~g~Y~C~a~n~  237 (252)
T 3bkj_L          192 ERQNGVL---NSWTDQDSKDSTY---------SM--SSTLTLTKDEYER-HNSYTCEATHK  237 (252)
T ss_dssp             EECSSEE---EEECCCCTTTCCE---------EE--EEEEEEEHHHHHH-CCEEEEEEECT
T ss_pred             ecCCCee---eecCcccCCCCCE---------EE--EEEEEEcchhccC-CCeEEEEEEeC
Confidence            7754310   0111112222322         11  2578999999999 99999999987

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.78  E-value=1.9e-17  Score=135.79  Aligned_cols=196  Identities=16%  Similarity=0.176  Sum_probs=117.9

Q ss_pred             ceeeecCCcEEEEEEecCCC-CCceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceE
Q psy14542        105 QVVVDVGHRIELHCRVSPKR-LSSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGEL  176 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l  176 (371)
                      ...+.+|++++|.|.+.+.+ ..+.+.|+|.  +..+.    ..+....   .+..........+++.+..     ...|
T Consensus        10 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~r~~~~~~~~~~~~~L   82 (253)
T 3uzq_A           10 AELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLE----WIGRIDP---ANGDTKYDPKFQGKATITADTSSNTAYL   82 (253)
T ss_dssp             CEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEE----EEEEEET---TTTEEEECGGGTTTEEEEEETTTTEEEE
T ss_pred             CeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCE----EEEEEcc---CCCcceeCCcCCCcEEEEeecCCCeEEE
Confidence            34458999999999998753 1279999983  21111    0111100   0000000000012333322     2359


Q ss_pred             EEEEeecCCccceeEEEeecccccee-eeeeccceeeeecc----------hhccccceeeeeeeeeeeecCCeEEEEEE
Q psy14542        177 IIHQVDESDRYRSYQCRGVNKLTGAS-LLSVNRGRLSLTEN----------KRLLSAAKMFEKHRILNVKKDESVILPCS  245 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~~~----------~~~~~p~~~~~~~~~~~~~~g~~~~l~C~  245 (371)
                      .|.+++.+| +|.|.|.+.+. .+.. ....   .+.|...          ....++.+...+.... +.+|++++|.|.
T Consensus        83 ~I~~v~~~D-sG~Y~C~~~~~-~~~~~~~~~---~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~-v~~G~~v~L~C~  156 (253)
T 3uzq_A           83 HLSSLTSGD-TAVYYCSRGWE-GFAYWGQGT---LVTVSAGGGGSGGGGSGGGGSELVMTQTPASLA-VSLGQRATISCR  156 (253)
T ss_dssp             EECSCCGGG-CEEEEEEECSS-SCCEECCCE---EEEECSSSCCCCC---------CCEEEECSEEE-ECTTSCEEEEEE
T ss_pred             EeCCCCccc-CEEEEEEEeeC-CccEECCCc---EEEEecCCccccccccCCCcccceEECcCCeEE-EeCCCCEEEEEE
Confidence            999999999 99999999985 3322 2223   5666531          1112455555555566 999999999999


Q ss_pred             eecCCCC----ceEEEeCC--cccc------------cCCceEEe----cceEEEeccCCCCCeEEEEEEEcCCCCc-ee
Q psy14542        246 AQGNPLP----TIKWYKQD--SPVE------------ESDRIQRI----GSSLSISHVEESDSGVWNCVANNSEGQD-KM  302 (371)
Q Consensus       246 ~~~~p~~----~v~W~~~~--~~~~------------~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~  302 (371)
                      +.+.+.+    .+.|++++  ..+.            ...++...    ..+|.|.++..+|+|.|.|.|.|..+.. ..
T Consensus       157 ~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~  236 (253)
T 3uzq_A          157 ASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGG  236 (253)
T ss_dssp             ESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCC
T ss_pred             ecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECC
Confidence            9988876    89999853  2221            11333321    2369999999999999999999976543 33


Q ss_pred             EEEEEEecCcc
Q psy14542        303 QLFIQYAHGKY  313 (371)
Q Consensus       303 ~~~l~v~~~p~  313 (371)
                      -..|.|...++
T Consensus       237 gt~l~v~~~~~  247 (253)
T 3uzq_A          237 GTKLEIKRPLE  247 (253)
T ss_dssp             CEEEEECCC--
T ss_pred             CEEEEEcCCCC
Confidence            45677766555

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.78  E-value=1.1e-17  Score=139.08  Aligned_cols=174  Identities=21%  Similarity=0.362  Sum_probs=112.7

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC-----EEEee------------------CCeeEEEEc
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG-----LVLRR------------------NSDEVLVLD   64 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~-----~~~~~------------------~~~~~l~i~   64 (371)
                      ...+.+...|.. +.+.+|++++|.|.+ .+.+.+.+.|+|++     ..+..                  ....+|.|.
T Consensus        10 ~~~~~v~~~p~~-~~v~~G~~v~L~C~~-~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   87 (276)
T 3auv_A           10 SGDIQMTQSPSS-LSASVGDRVTITCRA-SQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTIS   87 (276)
T ss_dssp             --CCCEEEECSE-EECCTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             ccceeEEeCCCe-EEEcCCCCEEEEeEc-CCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEc
Confidence            345677777877 889999999999965 45567889999853     12211                  134589999


Q ss_pred             cCCcCCCeEEEEEEEcCCCC-eEEEEEEEEecce------------e--eEecCCceeeecCCcEEEEEEecCCCC-Cce
Q psy14542         65 RVQREDAGMYQCHVSADDDS-AQMSAQVILGGEL------------V--EIASSNQVVVDVGHRIELHCRVSPKRL-SSA  128 (371)
Q Consensus        65 ~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~------------~--~~~~~~~~~~~~g~~v~l~C~~~~~~~-~~~  128 (371)
                      +++.+|+|.|.|.+.+..+. ......|.|...+            +  .+.......+.+|++++|.|.+.+.++ .+.
T Consensus        88 ~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~  167 (276)
T 3auv_A           88 SLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYW  167 (276)
T ss_dssp             SCCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSE
T ss_pred             cCChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCE
Confidence            99999999999999986543 2223456665221            1  122233445589999999999987652 379


Q ss_pred             EEEeeCC--EEeeeCCeeEEEEccc------CcCCCeeEEEEEeCCceeEec-----cceEEEEEeecCCccceeEEEee
Q psy14542        129 KAWLKDG--LVLRRNSDEVLVLDRV------QREDAGMYQCHIEDGKYHMLS-----SGELIIHQVDESDRYRSYQCRGV  195 (371)
Q Consensus       129 v~W~~~~--~~~~~~~~~~~~~~~~------~~~~~g~y~~~~~~~~~~~~~-----~~~l~i~~~~~~d~~g~y~C~~~  195 (371)
                      +.|++++  ..+.    ....+...      .....         +++.+..     ...|.|.+++.+| +|.|+|.+.
T Consensus       168 v~W~k~~~g~~~~----~l~~~~~~~~~~~~~~~~~---------~r~~~~~~~~~~~~~L~I~~v~~~D-sG~Y~C~a~  233 (276)
T 3auv_A          168 IHWVRQAPGKCLE----WVAGITPAGGYTYYADSVK---------GRFTISADTSKNTAYLQMNSLRAED-TAVYYCARF  233 (276)
T ss_dssp             EEEEEECTTCCEE----EEEEECGGGCCEEECTTTT---------TTEEEEEEGGGTEEEEEECSCCGGG-CEEEEEEEE
T ss_pred             EEEEEcCCCCCcE----EEEEEeccCCccccccccC---------CcEEEEecCCCcEEEEEECCCChhH-CEEEEEEEE
Confidence            9999963  1110    01111100      00111         2333322     1479999999999 999999999


Q ss_pred             cc
Q psy14542        196 NK  197 (371)
Q Consensus       196 ~~  197 (371)
                      |.
T Consensus       234 n~  235 (276)
T 3auv_A          234 VF  235 (276)
T ss_dssp             CS
T ss_pred             cC
Confidence            86

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.77  E-value=1.4e-17  Score=136.39  Aligned_cols=177  Identities=18%  Similarity=0.300  Sum_probs=110.5

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC-----EEEee------------------CCeeEEEEccC
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG-----LVLRR------------------NSDEVLVLDRV   66 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~-----~~~~~------------------~~~~~l~i~~~   66 (371)
                      .+.+...|.. +.+.+|++++|.|.+ .+.+.+.+.|+|+.     ..+..                  ....+|.|.++
T Consensus         4 ~~~v~~~p~~-~~v~~G~~v~L~C~~-~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   81 (250)
T 3esu_F            4 DIVLIQSTSS-LSASLGDRVTISCRA-SQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNL   81 (250)
T ss_dssp             CCCEECSCSE-EEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             ceeEEecCCE-EEeeCCCcEEEEEEe-cccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccC
Confidence            3456666666 889999999999965 45667799999842     11110                  03448999999


Q ss_pred             CcCCCeEEEEEEEcCCCCe-EEEEEEEEecc-------------------eeeEecCCceeeecCCcEEEEEEecCCCC-
Q psy14542         67 QREDAGMYQCHVSADDDSA-QMSAQVILGGE-------------------LVEIASSNQVVVDVGHRIELHCRVSPKRL-  125 (371)
Q Consensus        67 ~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~-------------------~~~~~~~~~~~~~~g~~v~l~C~~~~~~~-  125 (371)
                      +.+|+|.|.|.+.+..+.. .....|.|...                   ++.+...+...+.+|++++|.|.+.+.+. 
T Consensus        82 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~  161 (250)
T 3esu_F           82 EQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFS  161 (250)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGG
T ss_pred             ChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCccc
Confidence            9999999999998765442 23345666531                   12233334455589999999999987651 


Q ss_pred             CceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ceEEEEEeecCCccceeEEEeec
Q psy14542        126 SSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GELIIHQVDESDRYRSYQCRGVN  196 (371)
Q Consensus       126 ~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~l~i~~~~~~d~~g~y~C~~~~  196 (371)
                      .+.+.|+++  +..+..    ...+...   +..........+++.+..+     ..|.|.+++.+| +|.|.|.+.+
T Consensus       162 ~~~v~W~k~~~~~~~~~----~~~~~~~---~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D-sG~Y~C~~~~  231 (250)
T 3esu_F          162 SSWMNWVKQRPGQGPEW----IGRIYPG---DGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVD-SAVYFCARSG  231 (250)
T ss_dssp             GSEEEEEEECTTSCCEE----EEEEETT---TTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG-CEEEEEEEEC
T ss_pred             CCEEEEEEECCCCCcEE----EEEEecc---CCccccCccccceEEEEecCCCCeEEEEECCCCccc-CEEEEEEEec
Confidence            379999996  332211    0111000   0000000000123333322     369999999999 9999999986

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.77  E-value=5.4e-18  Score=136.57  Aligned_cols=195  Identities=15%  Similarity=0.146  Sum_probs=115.6

Q ss_pred             CceeeecCCcEEEEEEecCCCC-CceEEEeeCC--EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe-----ccce
Q psy14542        104 NQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDG--LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML-----SSGE  175 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~-----~~~~  175 (371)
                      +...+.+|++++|.|.+.+.+. ...+.|+|.+  ..+.    ..+.+....  ....+ .....+++.+.     .+..
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~----~l~~~~~~~--~~~~~-~~~~~~R~~~~~~~~~~~~s   80 (227)
T 1mju_H            8 GAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLE----WIGNIYPGS--SYTHY-NEKFKNKATLTVDTSSSTAY   80 (227)
T ss_dssp             SEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEE----EEEEEETTT--TEEEE-CGGGTTTEEEEEETTTTEEE
T ss_pred             CCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcE----EEEEEeccC--Cceee-CCccCCcEEEEEeCCCCeEE
Confidence            3444589999999999987651 2789999853  2111    011111000  00000 00001233333     2358


Q ss_pred             EEEEEeecCCccceeEEEeeccccce-eeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CCC-
Q psy14542        176 LIIHQVDESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PLP-  252 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-  252 (371)
                      |.|.+++.+| +|.|.|.+.+. ... .....   .|.|..... .+|.+........ +..|+.++|.|.+.|. |.+ 
T Consensus        81 L~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~---~L~V~~~~~-~~P~v~~~~~~~~-~~~g~~v~L~C~~~g~~P~p~  153 (227)
T 1mju_H           81 MQLSSLTSDD-SAVYYCANKLG-WFPYWGQGT---LVTVSAAKT-TAPSVYPLAPVCG-DTSGSSVTLGCLVKGYFPEPV  153 (227)
T ss_dssp             EEECSCCGGG-CEEEEEEEEET-TEEEECCCE---EEEECSSCC-BCCEEEEECCCC-------CEEEEEEEEEEBSSCC
T ss_pred             EEECCCCccc-CEEEEEEECCC-CceEEcCcE---EEEEcCCCC-CCCEEEEecCCcc-ccCCCcEEEEEEeecEeCCCe
Confidence            9999999999 99999999875 221 11222   566653211 2344443322223 6789999999999985 766 


Q ss_pred             ceEEEeCCccccc--CCc-----eEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542        253 TIKWYKQDSPVEE--SDR-----IQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       253 ~v~W~~~~~~~~~--~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      .+.|++++..+..  ...     .....+.|.|..+..+| |.|+|.|.|..+.......+.+..+|.
T Consensus       154 ~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~p~  220 (227)
T 1mju_H          154 TLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTI  220 (227)
T ss_dssp             EEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC--
T ss_pred             EEEEecCCCcCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCCCC
Confidence            8999999876421  111     11234578998888888 999999999888877777777777766

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.77  E-value=1.2e-17  Score=136.58  Aligned_cols=161  Identities=20%  Similarity=0.328  Sum_probs=104.9

Q ss_pred             EEEeccCcEEEEEEecCCCC--CCeeEEEeCC--E--E-E----------------------ee---CCeeEEEEccCCc
Q psy14542         21 VVVDVGHRIELHCRVSPKRL--SSAKAWLKDG--L--V-L----------------------RR---NSDEVLVLDRVQR   68 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~--~~~~~W~~~~--~--~-~----------------------~~---~~~~~l~i~~~~~   68 (371)
                      ..+.+|++++|.|.+. +.|  .+.+.|+|++  .  . +                      ..   ....+|.|.+++.
T Consensus        12 ~~v~~G~~v~L~C~~~-g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   90 (247)
T 2ghw_B           12 GVVQPGKSLRLSCAAS-GFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA   90 (247)
T ss_dssp             EEECTTCCEEEEEEEE-SSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             EEEecCCcEEEEEEec-cccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCH
Confidence            7899999999999654 444  5779999831  1  0 1                      00   0346899999999


Q ss_pred             CCCeEEEEEEEcCCCC--eEEEEEEEEecc--------------eeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEE
Q psy14542         69 EDAGMYQCHVSADDDS--AQMSAQVILGGE--------------LVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAW  131 (371)
Q Consensus        69 ~d~G~Y~C~~~~~~~~--~~~~~~l~v~~~--------------~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W  131 (371)
                      +|+|.|+|.+.+..+.  ......|.|...              ++.+...+. ..+.+|++++|.|.+.+.+. +.+.|
T Consensus        91 ~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~-~~v~W  169 (247)
T 2ghw_B           91 EDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVR-SNLAW  169 (247)
T ss_dssp             GGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCT-TCEEE
T ss_pred             HHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCcc-ceEEE
Confidence            9999999999986221  122346777632              233433333 34589999999999998887 79999


Q ss_pred             ee--CCEEeeeCCeeEEEEcc-cCcCCCeeEEEEEeCCceeEe---ccceEEEEEeecCCccceeEEEeecc
Q psy14542        132 LK--DGLVLRRNSDEVLVLDR-VQREDAGMYQCHIEDGKYHML---SSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       132 ~~--~~~~~~~~~~~~~~~~~-~~~~~~g~y~~~~~~~~~~~~---~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      +|  ++..+..    .+.... ......         .++...   ....|.|.+++.+| +|.|+|.+.+.
T Consensus       170 ~k~~~g~~~~~----~~~~~~~~~~~~~---------~r~~~~~~~~~~~L~I~~v~~~D-~G~Y~C~a~~~  227 (247)
T 2ghw_B          170 YQQKPGQAPRP----LIYDASTRATGIP---------DRFSGSGSGTDFTLTISRLEPED-FAVYYCQQRSN  227 (247)
T ss_dssp             EEECTTSCCEE----EEETTTEECTTCC---------TTEEEECSSSEEEEEECSCCGGG-CEEEEEEECSS
T ss_pred             EEECCCCCcEE----EEEEeccCCCccC---------CCEEEecCCCeEEEEECcCCHHH-CEEEEEEEccC
Confidence            99  4443211    000000 000001         122221   12469999999999 99999999875

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.77  E-value=7.3e-18  Score=135.25  Aligned_cols=188  Identities=16%  Similarity=0.193  Sum_probs=114.2

Q ss_pred             ceeeecCCcEEEEEEecCCC-CCceEEEeeCC--EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceE
Q psy14542        105 QVVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGEL  176 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l  176 (371)
                      ...+.+|++++|.|.+.+.+ ....+.|++++  ....    ..+.+..........+ .....+++.+..     +..|
T Consensus         9 ~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~R~~~~~~~~~~~~~L   83 (220)
T 1pz5_B            9 GGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLE----WVAEIRLKSNNYATHY-AESVKGRFTISRDDSKSSVYL   83 (220)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEE----EEEEECCGGGTTCEEE-CGGGTTTEEEEEEGGGTEEEE
T ss_pred             CEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcE----EEEEEEcCCCcccccc-CcccCCcEEEEEeCCCCeEEE
Confidence            34558999999999998765 13799999853  1110    0111110000000000 000012333321     2489


Q ss_pred             EEEEeecCCccceeEEEeecccccee-e--eeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CCC
Q psy14542        177 IIHQVDESDRYRSYQCRGVNKLTGAS-L--LSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PLP  252 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~~~~~~~~-~--~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~  252 (371)
                      .|.+++.+| +|.|.|.+.+. .+.. .  ...   .+.|.... ..+|.+...+.... +..|+.++|.|.+.|. |.|
T Consensus        84 ~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~~~---~l~V~~~~-~~~P~i~~~~~~~~-~~~g~~v~L~C~~~g~~P~p  156 (220)
T 1pz5_B           84 QMNNLRAED-TGIYYCTRGGA-VGAMDYWGQGT---SVTVSSAT-TTAPSVYPLVPGCS-DTSGSSVTLGCLVKGYFPEP  156 (220)
T ss_dssp             EECSCCGGG-CEEEEEEEECT-TSSEEEECCCE---EEEECSSC-CBCCEEEEECCCSC-CSCSSSEEEEEEEEEEBSSC
T ss_pred             EEccCCHHH-CEEEEEEEecC-CcccceECCCE---EEEEccCC-CCCCeEEEcccccc-cCCCCcEEEEEEEEEEeCCC
Confidence            999999999 99999999986 3221 1  222   56665321 13455544333333 6789999999999986 888


Q ss_pred             -ceEEEeCCcccc--cCC-----ceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEE
Q psy14542        253 -TIKWYKQDSPVE--ESD-----RIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLF  305 (371)
Q Consensus       253 -~v~W~~~~~~~~--~~~-----~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  305 (371)
                       .+.|++++....  ...     ......+.|.|..+..+| |.|+|.|.|..|....++.
T Consensus       157 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~  216 (220)
T 1pz5_B          157 VTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKE  216 (220)
T ss_dssp             CEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             eEEEEecCCcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeec
Confidence             999999887411  000     111234578998888866 9999999999997665543

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.77  E-value=9.3e-18  Score=137.68  Aligned_cols=173  Identities=17%  Similarity=0.271  Sum_probs=110.0

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCC-CCCCeeEEEeC--CE---EE----------------------ee---CCeeE
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPK-RLSSAKAWLKD--GL---VL----------------------RR---NSDEV   60 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~--~~---~~----------------------~~---~~~~~   60 (371)
                      .+...|.. +.+.+|++++|.|.+... .+.+.+.|+|.  +.   .+                      ..   ....+
T Consensus         3 ~~~~~p~~-~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   81 (253)
T 3uzq_A            3 KLLEQSGA-ELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAY   81 (253)
T ss_dssp             CCEEECCC-EEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEE
T ss_pred             eeEecCCC-eeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEE
Confidence            34556666 889999999999965432 23678999981  11   11                      00   03556


Q ss_pred             EEEccCCcCCCeEEEEEEEcCCCCe-EEEEEEEEecc--------------eeeEecCCc-eeeecCCcEEEEEEecCCC
Q psy14542         61 LVLDRVQREDAGMYQCHVSADDDSA-QMSAQVILGGE--------------LVEIASSNQ-VVVDVGHRIELHCRVSPKR  124 (371)
Q Consensus        61 l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~--------------~~~~~~~~~-~~~~~g~~v~l~C~~~~~~  124 (371)
                      |.|.+++.+|+|.|.|.+.+..+.. .....|.|...              ++.+...+. ..+.+|++++|.|.+.+.+
T Consensus        82 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~  161 (253)
T 3uzq_A           82 LHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENV  161 (253)
T ss_dssp             EEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCC
T ss_pred             EEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCcc
Confidence            9999999999999999999865443 24456666632              344444444 4458999999999999877


Q ss_pred             CC---ceEEEeeCC--EEeeeCCeeEEEEccc--CcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        125 LS---SAKAWLKDG--LVLRRNSDEVLVLDRV--QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       125 ~~---~~v~W~~~~--~~~~~~~~~~~~~~~~--~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      .+   ..+.|++++  ..+.    . +.....  .....+.|.....      .....|.|.+++.+| +|.|.|.+.+.
T Consensus       162 ~~~~~~~v~W~r~~~~~~~~----~-~~~~~~~~~~~~~~r~~~~~~------~~~~~L~I~~v~~~D-sG~Y~C~~~n~  229 (253)
T 3uzq_A          162 DRYGNSFMHWYQQKAGQPPK----L-LIYRASNLESGIPARFSGSGS------RTDFTLTINPVEADD-VATYFCQRSNE  229 (253)
T ss_dssp             EETTEECEEEEEECTTSCCE----E-EEETTTEECTTCCTTEEEEEE------TTEEEEEESSCCGGG-CEEEEEEECSS
T ss_pred             ccCCCcEEEEEEECCCCCCE----E-EEEEccccCCccCCceEEeCC------CCEEEEEECCCCHHH-CEEEEEEEccC
Confidence            62   289999842  2111    0 100000  0001111211100      112469999999999 99999999886

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.77  E-value=2.1e-17  Score=135.81  Aligned_cols=176  Identities=16%  Similarity=0.264  Sum_probs=110.4

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCC-CCCCeeEEEeCC--E---EE----------------------e--e-CC
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDG--L---VL----------------------R--R-NS   57 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~~--~---~~----------------------~--~-~~   57 (371)
                      +++.+...+.. +.+.+|++++|.|.+... .+.+.+.|+|..  .   .+                      .  . ..
T Consensus         5 ~~~~~~~~~~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   83 (256)
T 3juy_B            5 HHQVQLVQSGA-EVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSAN   83 (256)
T ss_dssp             --CCEEEECCC-EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTT
T ss_pred             cceEEEEecCC-ceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCC
Confidence            34555666666 999999999999976542 356789999731  1   00                      0  0 03


Q ss_pred             eeEEEEccCCcCCCeEEEEEEEcC------------CCCeEEEEEEEEecc--------------eeeEecCC-ceeeec
Q psy14542         58 DEVLVLDRVQREDAGMYQCHVSAD------------DDSAQMSAQVILGGE--------------LVEIASSN-QVVVDV  110 (371)
Q Consensus        58 ~~~l~i~~~~~~d~G~Y~C~~~~~------------~~~~~~~~~l~v~~~--------------~~~~~~~~-~~~~~~  110 (371)
                      ..+|.|.+++.+|+|.|.|.+.+.            .........|.|...              ++.+...+ ...+.+
T Consensus        84 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  163 (256)
T 3juy_B           84 TAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSP  163 (256)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECT
T ss_pred             EEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeC
Confidence            457999999999999999999886            122233456777642              22333333 344589


Q ss_pred             CCcEEEEEEecCCCCCceEEEeeC--CEEeeeCCeeEEEEccc--CcCCCeeEEEEEeCCceeEeccceEEEEEeecCCc
Q psy14542        111 GHRIELHCRVSPKRLSSAKAWLKD--GLVLRRNSDEVLVLDRV--QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDR  186 (371)
Q Consensus       111 g~~v~l~C~~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~--~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~  186 (371)
                      |++++|.|.+.+.+..+.+.|++.  +..+.    . +.....  .....+.|......      ....|.|.+++.+| 
T Consensus       164 G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~----~-~~~~~~~~~~~~~~r~~~~~~~------~~~~L~I~~v~~~D-  231 (256)
T 3juy_B          164 GERATFSCRSSHSIRSRRVAWYQHKPGQAPR----L-VIHGVSNRASGISDRFSGSGSG------TDFTLTITRVEPED-  231 (256)
T ss_dssp             TSCEEEEEEESSCCTTCCEEEEEECTTSCCE----E-EEETTTEECTTCCTTEEEEEET------TEEEEEESSCCGGG-
T ss_pred             CCCEEEEEEECCCcCCeeEEEEEECCCCCcE----E-EEEecCccCCccCCcEEEEccC------CEEEEEECCCCHhH-
Confidence            999999999988654479999983  22111    0 100000  00011112111110      12469999999999 


Q ss_pred             cceeEEEeecc
Q psy14542        187 YRSYQCRGVNK  197 (371)
Q Consensus       187 ~g~y~C~~~~~  197 (371)
                      +|.|.|.+.+.
T Consensus       232 sG~Y~C~~~~~  242 (256)
T 3juy_B          232 FALYYCQVYGA  242 (256)
T ss_dssp             CSEEEEEECCS
T ss_pred             CEEEEEEEeeC
Confidence            99999999875

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.77  E-value=6.2e-18  Score=134.63  Aligned_cols=182  Identities=14%  Similarity=0.203  Sum_probs=113.0

Q ss_pred             ceeeecCCcEEEEEEecCCC-CCceEEEeeCC--EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceE
Q psy14542        105 QVVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGEL  176 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l  176 (371)
                      ...+.+|++++|.|.+.+.+ ..+.+.|+|++  ....    ..+.... .  ....+ .....+++.+..     +..|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~----~~~~~~~-~--~~~~~-~~~~~~r~~~~~~~~~~~~~L   80 (210)
T 3d9a_H            9 PSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLE----YMGYVSY-S--GSTYY-NPSLKSRISITRDTSKNQYYL   80 (210)
T ss_dssp             CSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEE----EEEEECT-T--SCEEE-CGGGTTTEEEEEEGGGTEEEE
T ss_pred             CEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcE----EEEEEcC-C--CCeEE-CcccCceEEEEecCCCCEEEE
Confidence            34558999999999998764 23789999852  2111    0011100 0  00000 000012333331     2489


Q ss_pred             EEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CCC-ce
Q psy14542        177 IIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PLP-TI  254 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v  254 (371)
                      .|.+++.+| +|.|.|.+.+. . ......   .+.|.... ..+|.+...+.... +..|+.+.|.|.+.+. |.+ .+
T Consensus        81 ~I~~v~~~D-~G~Y~C~~~~~-~-~~~~~~---~l~V~~~~-~~~P~v~~~~~~~~-~~~g~~v~L~C~~~g~~P~p~~v  152 (210)
T 3d9a_H           81 DLNSVTTED-TATYYCANWDG-D-YWGQGT---LVTVSAAK-TTPPSVYPLAPGSA-AQTNSMVTLGCLVKGYFPEPVTV  152 (210)
T ss_dssp             EECSCCGGG-CEEEEEEETTS-S-CBCCCE---EEEECCCC-CBCCEEEEECCTTS-CCCSSEEEEEEEEEEEBSSCCEE
T ss_pred             EECCCCccc-CEEEEEEEecC-c-ccccce---EEEeccCC-CCCCEEEEecCCcc-cccCCcEEEEEEEeeEecCCcEE
Confidence            999999999 99999999986 2 111122   55555311 13455544333333 6789999999999986 878 99


Q ss_pred             EEEeCCcccccC--Cce-----EEecceEEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542        255 KWYKQDSPVEES--DRI-----QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ  303 (371)
Q Consensus       255 ~W~~~~~~~~~~--~~~-----~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  303 (371)
                      .|++++..+...  ...     ....+.|.|..+..+| |.|+|.|.|..|.....
T Consensus       153 ~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  207 (210)
T 3d9a_H          153 TWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD  207 (210)
T ss_dssp             EEGGGTBCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred             EEeeCCcccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcccc
Confidence            999998754211  111     1223568999988877 99999999999876544

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.77  E-value=3.1e-17  Score=136.33  Aligned_cols=189  Identities=16%  Similarity=0.218  Sum_probs=112.4

Q ss_pred             eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcc-cCcCCCeeEEEEEeCCceeEec---cceEEEEEee
Q psy14542        107 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDR-VQREDAGMYQCHIEDGKYHMLS---SGELIIHQVD  182 (371)
Q Consensus       107 ~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~g~y~~~~~~~~~~~~~---~~~l~i~~~~  182 (371)
                      .+.+|++++|.|.+.+.+. +.+.|++++...  .....+.... ......         +++....   ...|.|.+++
T Consensus        23 ~v~~G~~v~L~C~~~~~p~-~~i~W~r~~~~~--~~~~~~~~~~~~~~~~~---------~r~~~~~~~~~~~L~I~~v~   90 (276)
T 3auv_A           23 SASVGDRVTITCRASQDVS-TAVAWYQQKPGK--APKLLIYSASFLYSGVP---------SRFSGSGSGTDFTLTISSLQ   90 (276)
T ss_dssp             ECCTTCCEEEEEEESSCCT-TCEEEEEECTTS--CCEEEEETTTEECTTCC---------TTEEEEEETTEEEEEESSCC
T ss_pred             EEcCCCCEEEEeEcCCCCC-CcEEEEEECCCC--CCEEEEEEcCccCCCCC---------CCEEEeccCCeEEEEEccCC
Confidence            4589999999999988876 899999854200  0000000000 000011         2333221   2479999999


Q ss_pred             cCCccceeEEEeeccccce-eeeeeccceeeeecchh--------ccccce-eeeeeeeeeeecCCeEEEEEEeecCC--
Q psy14542        183 ESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKR--------LLSAAK-MFEKHRILNVKKDESVILPCSAQGNP--  250 (371)
Q Consensus       183 ~~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~--------~~~p~~-~~~~~~~~~~~~g~~~~l~C~~~~~p--  250 (371)
                      .+| +|.|.|.+.+. .+. .....   .|.|.....        ..+|.+ ...+.... +..|++++|.|.+.+.+  
T Consensus        91 ~~D-sG~Y~C~~~n~-~~~~~~~~~---~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~-v~~G~~v~L~C~~~g~~~~  164 (276)
T 3auv_A           91 PED-FATYYCQQHYT-TPPTFGCGT---KVEIKGGGGGSIEGRSGGGGSEVQLVESGGGL-VQPGGSLRLSCAASGFTIS  164 (276)
T ss_dssp             GGG-CEEEEEEECSS-SSCCCCCCE---EEEC-----------------CCEEEEECCEE-ECTTCCEEEEEEEESSCGG
T ss_pred             hhh-CEEEEEEEecC-CcccccCCE---EEEEecCCCccccccccccCcceEEECCCceE-ecCCCeEEEEEEecCccCC
Confidence            999 99999999986 332 22223   566653211        011222 23334444 89999999999999876  


Q ss_pred             CCceEEEeCC--ccc-----------------ccCCceEEec------ceEEEeccCCCCCeEEEEEEEcCC---CC--c
Q psy14542        251 LPTIKWYKQD--SPV-----------------EESDRIQRIG------SSLSISHVEESDSGVWNCVANNSE---GQ--D  300 (371)
Q Consensus       251 ~~~v~W~~~~--~~~-----------------~~~~~~~~~~------~~l~i~~~~~~d~G~Y~C~a~n~~---g~--~  300 (371)
                      .+.+.|++++  ..+                 ....++....      .+|.|.++..+|+|.|+|.|.|..   +.  .
T Consensus       165 ~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~~~~~~~~f  244 (276)
T 3auv_A          165 DYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFFLPYAMDYW  244 (276)
T ss_dssp             GSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSSTTCSCCCB
T ss_pred             CCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCcCCcCceEE
Confidence            4889999964  211                 0123444321      279999999999999999999983   22  1


Q ss_pred             eeEEEEEEecCcc
Q psy14542        301 KMQLFIQYAHGKY  313 (371)
Q Consensus       301 ~~~~~l~v~~~p~  313 (371)
                      .....|.|...+.
T Consensus       245 g~gt~l~V~~~~~  257 (276)
T 3auv_A          245 GQGTLVTVSSASA  257 (276)
T ss_dssp             CCCEEEEEC----
T ss_pred             CCCEEEEEccccc
Confidence            2335566654443

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.77  E-value=5.9e-18  Score=135.21  Aligned_cols=149  Identities=18%  Similarity=0.253  Sum_probs=105.1

Q ss_pred             CCCcEEEeccCcEEEEEEecCC------CCCCeeEEEeCCEE------Eee----------------------CCeeEEE
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPK------RLSSAKAWLKDGLV------LRR----------------------NSDEVLV   62 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~------~~~~~~~W~~~~~~------~~~----------------------~~~~~l~   62 (371)
                      |.. +.+.+|++++|.|.+...      .+.+.+.|+|++..      +..                      ..+.+|.
T Consensus         7 p~~-v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~   85 (214)
T 2zg1_A            7 QKS-VTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLS   85 (214)
T ss_dssp             CSE-EEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEE
T ss_pred             CcE-EEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEE
Confidence            444 889999999999976533      25678999997642      100                      0245799


Q ss_pred             EccCCcCCCeEEEEEEEcCCCCe----EEEEEEEEecc--eeeEecCCceeeecCCcEEEEEEecCC----CCCceEEEe
Q psy14542         63 LDRVQREDAGMYQCHVSADDDSA----QMSAQVILGGE--LVEIASSNQVVVDVGHRIELHCRVSPK----RLSSAKAWL  132 (371)
Q Consensus        63 i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~l~v~~~--~~~~~~~~~~~~~~g~~v~l~C~~~~~----~~~~~v~W~  132 (371)
                      |.+++.+|+|.|.|.+.+..+..    ...+.|.|...  .|.+....  .+.+|+.++|.|.+.+.    |. +.+.|+
T Consensus        86 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~--~~~~G~~v~L~C~~~~~~~~~p~-p~v~W~  162 (214)
T 2zg1_A           86 IGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE--PLESGRPTRLSCSLPGSCEAGPP-LTFSWT  162 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--C--CCCTTCCEEEEEECTTCCSCSSC-CEEEEE
T ss_pred             EccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCc--cccCCCeEEEEEEeccCCCCCCC-ceEEEe
Confidence            99999999999999999865322    13566777632  34443322  25789999999999774    44 899999


Q ss_pred             eCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        133 KDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      +++......                         ..  ...+.|.|..+..+| .|.|+|.|.|.
T Consensus       163 ~~~~~~~~~-------------------------~~--~~~~~L~i~~~~~~~-~g~Y~C~a~n~  199 (214)
T 2zg1_A          163 GNALSPLDP-------------------------ET--TRSSELTLTPRPEDH-GTNLTCQMKRQ  199 (214)
T ss_dssp             SSTTSSSCS-------------------------SC--CCSSEEEECCCTTCC-SCEEEEEEECC
T ss_pred             CCCCccCCC-------------------------Cc--eeEEEEEEecccHHc-CcEEEEEEEeC
Confidence            988532111                         00  122678999998888 99999999997

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.77  E-value=1.8e-18  Score=140.27  Aligned_cols=183  Identities=14%  Similarity=0.161  Sum_probs=114.0

Q ss_pred             ceeeecCCcEEEEEEecCCCCCc-eEEEeeCCEEeeeCCeeEEEEcccC---cCCCeeEEEEEeCCceeEeccceEEEEE
Q psy14542        105 QVVVDVGHRIELHCRVSPKRLSS-AKAWLKDGLVLRRNSDEVLVLDRVQ---REDAGMYQCHIEDGKYHMLSSGELIIHQ  180 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~g~y~~~~~~~~~~~~~~~~l~i~~  180 (371)
                      ...+.+|++++|.|.+.+.+... .+.|++++...    .....+....   ....+.|.....      ..+..|.|.+
T Consensus        28 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~----~~~~~~~~~~~~~~~~~~r~~~~~~------~~~~~L~I~~   97 (234)
T 2j6e_L           28 SASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGT----APKLLIYRNNQRPSGVPDRFSGSKS------GTSASLAISG   97 (234)
T ss_dssp             CCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSS----CCEEEEBTTTBCCSSSCTTEEEEEE------TTEEEEEEES
T ss_pred             cEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCC----CcEEEEECccccCCCccccEEEEec------CCeEEEEECC
Confidence            33458999999999998764423 79999863200    0001111100   001122211110      1224799999


Q ss_pred             eecCCccceeEEEeeccccc---eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCC--CceE
Q psy14542        181 VDESDRYRSYQCRGVNKLTG---ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL--PTIK  255 (371)
Q Consensus       181 ~~~~d~~g~y~C~~~~~~~~---~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~  255 (371)
                      ++.+| +|.|+|.+.+. .+   ......   .+.|..... .+|.+...+.... ...|+.++|.|.+.+.++  +.+.
T Consensus        98 v~~~D-~G~Y~C~~~~~-~~~~~~~~~~~---~l~V~~~~~-~~p~v~~~~~~~~-~~~g~~v~L~C~~~g~~p~~~~v~  170 (234)
T 2j6e_L           98 LRSED-EADYYCATWDD-SLSAVIFGGGT---KLTVLGQPK-AAPSVTLFPPSSE-ELQANKATLVCLISDFFPGAVTVA  170 (234)
T ss_dssp             CCSTT-CSEEEEEEEET-TTTEEEECCCB---CCCBCCCCC-CCCCCCEECCCHH-HHTTSCCCEEECCCBCSSCCCEEE
T ss_pred             CCHHH-CEEEEEEEEcC-CcceeEecCCE---EEEEecCCC-CCCcccccCCChh-HhcCCceEEEEEEEEEcCCceEEE
Confidence            99999 99999999987 44   121222   555542111 3455554333323 446889999999998543  3899


Q ss_pred             EEeCCcccccCCce---E-------EecceEEEeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542        256 WYKQDSPVEESDRI---Q-------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL  304 (371)
Q Consensus       256 W~~~~~~~~~~~~~---~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  304 (371)
                      |+++|..+..+...   .       ...+.|.|..+..+|+|.|+|.|.|..+....++
T Consensus       171 W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  229 (234)
T 2j6e_L          171 WKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  229 (234)
T ss_dssp             EEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEE
T ss_pred             EEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEec
Confidence            99999887544211   0       1224688999999999999999999988755544

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.77  E-value=2.6e-17  Score=133.90  Aligned_cols=177  Identities=19%  Similarity=0.355  Sum_probs=111.7

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCC----CCeeEEEeCC--E---EEee------------------CCeeEEEE
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRL----SSAKAWLKDG--L---VLRR------------------NSDEVLVL   63 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~----~~~~~W~~~~--~---~~~~------------------~~~~~l~i   63 (371)
                      +.+...|.. +.+.+|++++|.|.+. +.+    .+.+.|+|++  .   .+..                  ....+|.|
T Consensus         2 ~~v~~~p~~-~~v~~G~~v~L~C~~~-~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I   79 (240)
T 1moe_A            2 IVLTQSPAS-LAVSLGQRATMSCRAG-ESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLII   79 (240)
T ss_dssp             CCEEEECSE-EEECTTSCEEEEEEES-SCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred             CceEeeCCe-EEecCCCCEEEEEeCC-CccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEE
Confidence            345666766 8899999999999654 444    6789999942  1   1110                  03448999


Q ss_pred             ccCCcCCCeEEEEEEEcCCCC-eEEEEEEEEecce-----e-eEecCCceeeecCCcEEEEEEecCCCC-CceEEEeeCC
Q psy14542         64 DRVQREDAGMYQCHVSADDDS-AQMSAQVILGGEL-----V-EIASSNQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDG  135 (371)
Q Consensus        64 ~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~-----~-~~~~~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~  135 (371)
                      .+++.+|+|.|+|.+.+..+. ......|.|...+     + .+.......+.+|++++|.|.+.+.+. .+.+.|+++.
T Consensus        80 ~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~  159 (240)
T 1moe_A           80 DPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQR  159 (240)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             cCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEEC
Confidence            999999999999999987554 3344567776321     1 223333445589999999999998764 2699999952


Q ss_pred             --EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEEEEEeecCCccceeEEEeecc
Q psy14542        136 --LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       136 --~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                        ..+.    ....+...   +..........+++.+..     ...|.|.+++.+| +|.|+|.+...
T Consensus       160 ~g~~~~----~~~~~~~~---~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D-~G~Y~C~a~~~  220 (240)
T 1moe_A          160 PEQGLE----WIGRIDPA---NGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSED-TAVYYCAPFGY  220 (240)
T ss_dssp             TTSCCE----EEEEEETT---TTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG-CEEEEEEECST
T ss_pred             CCCCcE----EEEEEccc---CCccccCccccccEEEEEcccCCEEEEEECcCCHHH-CEEEEEEEEec
Confidence              2111    01111000   000000000012333221     2579999999999 99999999853

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.76  E-value=8.4e-18  Score=137.84  Aligned_cols=177  Identities=14%  Similarity=0.189  Sum_probs=112.1

Q ss_pred             ceeeecCCcEEEEEEecCCCC----CceEEEeeCCEEeeeCCeeEEEEcc--cCcCCCeeEEEEEeCCceeEec---cce
Q psy14542        105 QVVVDVGHRIELHCRVSPKRL----SSAKAWLKDGLVLRRNSDEVLVLDR--VQREDAGMYQCHIEDGKYHMLS---SGE  175 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~g~y~~~~~~~~~~~~~---~~~  175 (371)
                      ...+.+|++++|.|.+.+.+.    .+.+.|+|++...  ... .+....  ......         +++....   +..
T Consensus        43 ~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~--~~~-~~~~~~~~~~~~~~---------~r~~~~~~~~~~~  110 (252)
T 3bkj_L           43 SLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQ--SPK-LLIYQVSTRFSGVP---------DRFSGSGSGTDFT  110 (252)
T ss_dssp             EEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTS--CCE-EEEETTTEECTTCC---------TTEEEEEETTEEE
T ss_pred             eEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCC--CcE-EEEEcCCcccCCcC---------CceEEEccCCEEE
Confidence            334589999999999988761    2799999854200  000 011100  000011         2332221   247


Q ss_pred             EEEEEeecCCccceeEEEeeccccce-eeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-CCCC-
Q psy14542        176 LIIHQVDESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLP-  252 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-  252 (371)
                      |.|.+++.+| +|.|.|.+.+. .+. .....   .+.|...  ..+|.+...+.... +..|+.++|.|.+.+ .|.+ 
T Consensus       111 L~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~---~l~V~~~--~~~P~v~~~~~~~~-~~~g~~v~L~C~~~g~~p~~~  182 (252)
T 3bkj_L          111 LRISRVEAED-LGVYYCFQASL-VPLTFGAGT---KLELKRA--DAAPTVSIFPPSSE-QLTSGGASVVCFLNNFYPKDI  182 (252)
T ss_dssp             EEESSCCGGG-CEEEEEEECSB-SSCEECCCE---EEEECCC--CBCCEEEEECCCHH-HHHHTEEEEEEEEEEEBSSCC
T ss_pred             EEECCCCccc-CEEEEEEEEcC-CccEECCCE---EEEEeCC--CcCcEEEEeCCChh-hcCCCcEEEEEEEeeEeCCCc
Confidence            9999999999 99999999887 332 11222   4555421  13455554433333 457899999999988 4543 


Q ss_pred             ceEEEeCCcccccC-Cc---e-------EEecceEEEeccCCCCCeEEEEEEEcCCCCce
Q psy14542        253 TIKWYKQDSPVEES-DR---I-------QRIGSSLSISHVEESDSGVWNCVANNSEGQDK  301 (371)
Q Consensus       253 ~v~W~~~~~~~~~~-~~---~-------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  301 (371)
                      ++.|+++|..+... ..   .       ....+.|.|..+..+|+|.|+|.|.|......
T Consensus       183 ~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~p  242 (252)
T 3bkj_L          183 NVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSP  242 (252)
T ss_dssp             EEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSC
T ss_pred             EEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCCC
Confidence            79999999876544 10   0       01123589999999999999999999876643

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.76  E-value=4.9e-17  Score=133.43  Aligned_cols=167  Identities=20%  Similarity=0.277  Sum_probs=108.9

Q ss_pred             CCCcEEEeccCcEEEEEEecCCCC--CCeeEEEeC--CEEE---ee-------------------------CCeeEEEEc
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKRL--SSAKAWLKD--GLVL---RR-------------------------NSDEVLVLD   64 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~~--~~~~~W~~~--~~~~---~~-------------------------~~~~~l~i~   64 (371)
                      |.. +.+.+|++++|.|.+. +.+  .+.+.|+|+  +..+   ..                         ....+|.|.
T Consensus         7 p~~-~~v~~G~~v~L~C~~~-g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (256)
T 1nqb_A            7 SGA-ELVKPGASVKLSCKAS-GYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLS   84 (256)
T ss_dssp             CCC-EEECTTCCEEEEEEEC-SSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             CCC-eeecCCCcEEEEEEec-cccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEEC
Confidence            444 7899999999999654 433  578999983  2111   00                         024689999


Q ss_pred             cCCcCCCeEEEEEEEcCCCC-----eEEEEEEEEecceeeEecCCc-eeeecCCcEEEEEEecCCCCC----ceEEEee-
Q psy14542         65 RVQREDAGMYQCHVSADDDS-----AQMSAQVILGGELVEIASSNQ-VVVDVGHRIELHCRVSPKRLS----SAKAWLK-  133 (371)
Q Consensus        65 ~~~~~d~G~Y~C~~~~~~~~-----~~~~~~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~----~~v~W~~-  133 (371)
                      +++.+|+|.|.|.+.+..+.     ....+.|.|. .++.+...+. ..+.+|++++|.|.+.+.+.+    +.+.|+| 
T Consensus        85 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~-~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~  163 (256)
T 1nqb_A           85 SLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVS-SDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQ  163 (256)
T ss_dssp             SCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEEC-CCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             cCChhhCEEEEEEEeeccCccceeEEcCceeeeec-ccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEE
Confidence            99999999999999987552     1234677777 4444544444 345899999999999988763    3999999 


Q ss_pred             -CCEEeeeCCeeEEEEcc-cCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        134 -DGLVLRRNSDEVLVLDR-VQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       134 -~~~~~~~~~~~~~~~~~-~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                       ++..+..    .+.... ......+.|....      ......|.|.+++.+| +|.|+|.+.+.
T Consensus       164 ~~g~~~~~----~~~~~~~~~~~~~~r~~~~~------~~~~~~L~I~~v~~~D-sG~Y~C~a~~~  218 (256)
T 1nqb_A          164 KPGQSPKL----LIYKVSNRFSGVPDRFSGSG------SGTDFTLKISRVEAED-LGVYYCFQGSH  218 (256)
T ss_dssp             CTTSCEEE----EEETTTEECTTCCTTEEEEE------ETTEEEEEESSCCGGG-CEEEEEEECSS
T ss_pred             CCCCCcEE----EEEEeCCCCCccCCcEEEEc------cCCEEEEEECCCChHH-CEEEEEEEccC
Confidence             4543211    000000 0000011111110      0122579999999999 99999999875

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.76  E-value=2.6e-17  Score=127.06  Aligned_cols=144  Identities=14%  Similarity=0.168  Sum_probs=102.4

Q ss_pred             EEEeccCcEEEEEEecC-CCCCCeeEEEe--CCEEEe----------eC------CeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542         21 VVVDVGHRIELHCRVSP-KRLSSAKAWLK--DGLVLR----------RN------SDEVLVLDRVQREDAGMYQCHVSAD   81 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~-~~~~~~~~W~~--~~~~~~----------~~------~~~~l~i~~~~~~d~G~Y~C~~~~~   81 (371)
                      +.+.+|++++|.|.... +.+.+.|.|++  ++..+.          ..      .+++|.|.+++.+|+|.|+|.+.+.
T Consensus         9 v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~n~   88 (182)
T 1hnf_A            9 TWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDT   88 (182)
T ss_dssp             EEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEEEeC
Confidence            77899999999994322 34567899999  887662          11      5568999999999999999999988


Q ss_pred             CCCeE--EEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeE
Q psy14542         82 DDSAQ--MSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMY  159 (371)
Q Consensus        82 ~~~~~--~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y  159 (371)
                      .+...  ..+.|.|.+..    ..|... ..+..+.|.|.+.+.+. +.|.|++++..+...                  
T Consensus        89 ~g~~~~~~~~~L~V~~~~----~~P~i~-~~~~~v~L~C~~~~~p~-~~~~W~~~g~~l~~~------------------  144 (182)
T 1hnf_A           89 KGKNVLEKIFDLKIQERV----SKPKIS-WTCINTTLTCEVMNGTD-PELNLYQDGKHLKLS------------------  144 (182)
T ss_dssp             TSCEEEEEEEEEEEECCC----CCCEEE-EETTTTEEEEECSSCSS-CEEEEEESSCEEEEE------------------
T ss_pred             CCceeEEEEEEEEEcCcC----CCCEEE-EccCcEEEEeEccCCCC-CEEEEEECCEECCCC------------------
Confidence            77653  56777777321    111111 23447999999998776 899999999877211                  


Q ss_pred             EEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeee
Q psy14542        160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLL  204 (371)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~  204 (371)
                           .        ..+.+. ....| .|.|+|.|.|. .+....
T Consensus       145 -----~--------~~i~~~-~~~~d-~G~Y~C~a~N~-~~~~~s  173 (182)
T 1hnf_A          145 -----Q--------RVITHK-WTTSL-SAKFKCTAGNK-VSKESS  173 (182)
T ss_dssp             -----S--------SCEEEE-CCSCE-EEEEEEEEECS-SCEEEE
T ss_pred             -----C--------cEEEEe-cccCC-CcEEEEEEEeC-CCCcEE
Confidence                 0        223322 24677 99999999998 554443

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.76  E-value=1.4e-17  Score=135.32  Aligned_cols=178  Identities=20%  Similarity=0.289  Sum_probs=109.1

Q ss_pred             eeeecCCcEEEEEEecCCCCCceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe----ccceEEEE
Q psy14542        106 VVVDVGHRIELHCRVSPKRLSSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML----SSGELIIH  179 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~----~~~~l~i~  179 (371)
                      ..+.+|++++|.|. .+.+. +.+.|+++  +..+.    ..+..........+     ...+++.+.    ....|.|.
T Consensus        10 ~~v~~G~~v~L~C~-~~~~~-~~i~W~k~~~~~~~~----~~~~~~~~~~~~~~-----~~~~r~~~~~~~~~~~~L~I~   78 (238)
T 2p1y_A           10 KVAVTGGKVTLSCN-QTNNH-NNMYWYRQDTGHGLR----LIHYSYGAGSTEKG-----DIPDGYKASRPSQENFSLILE   78 (238)
T ss_dssp             EEEETTCCEEEEEE-ECSCC-SEEEEEEEETTTEEE----EEEEESSTTCCEEC-----SSCTTCEEECCSSSBCEEEES
T ss_pred             eEEeCCCEEEEEee-cCCCC-ccEEEEEECCCCCcE----EEEEEecCcceeCC-----CccceEEEEccCCceEEEEEe
Confidence            34589999999999 56565 89999985  22111    11111110000000     001233332    13579999


Q ss_pred             EeecCCccceeEEEeecccccee--eeeeccceeeeecchhcc-------ccceeeeeeeeeeeecCCeEEEEEEeecCC
Q psy14542        180 QVDESDRYRSYQCRGVNKLTGAS--LLSVNRGRLSLTENKRLL-------SAAKMFEKHRILNVKKDESVILPCSAQGNP  250 (371)
Q Consensus       180 ~~~~~d~~g~y~C~~~~~~~~~~--~~~~~~~~l~v~~~~~~~-------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p  250 (371)
                      +++.+| +|.|+|.+.+. .+..  ........+.|.......       .+.+...+.... +.+|+.++|.|.+.+.|
T Consensus        79 ~v~~~D-sG~Y~C~~~~~-~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~-v~~G~~v~L~C~~~~~p  155 (238)
T 2p1y_A           79 LATPSQ-TSVYFCASGDL-GQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLT-VWEGETAILNCSYENSA  155 (238)
T ss_dssp             SCCGGG-CEEEEEEEEC-------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEE-EETTSCEEEEEECCCTT
T ss_pred             cCCccc-CeeEEEEEEeC-CCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEE-EeCCCeEEEEEEEecCC
Confidence            999999 99999999986 3311  010011255665321100       114444455555 89999999999999999


Q ss_pred             CCceEEEeCCc--cc------------ccCCceEEe------cceEEEeccCCCCCeEEEEEEEcCC
Q psy14542        251 LPTIKWYKQDS--PV------------EESDRIQRI------GSSLSISHVEESDSGVWNCVANNSE  297 (371)
Q Consensus       251 ~~~v~W~~~~~--~~------------~~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~a~n~~  297 (371)
                      .+.+.|++++.  .+            ....++...      ..+|.|.++..+|+|.|+|.|.|..
T Consensus       156 ~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          156 FDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             CCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            99999999642  11            112344432      2479999999999999999999974

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.76  E-value=5.3e-17  Score=130.39  Aligned_cols=192  Identities=14%  Similarity=0.187  Sum_probs=114.3

Q ss_pred             CceeeecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEE
Q psy14542        104 NQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELI  177 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~  177 (371)
                      +...+.+|++++|.|.+.+.+. ...+.|+|.....  .....+......  ....+ .....+++.+..     +..|.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~--~~~~~~~~~~~~--~~~~~-~~~~~~R~~~~~~~~~~~~sL~   82 (223)
T 1dee_B            8 GGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGK--GLEWVALISYDE--SNKYY-ADSVKGRFTISRDNSKNTLYLQ   82 (223)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTS--CEEEEEEECTTS--CCEEE-CTTTBTTEEEEEETTTTEEEEE
T ss_pred             CCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCC--CcEEEEEEecCC--Ccccc-CcccCCeEEEEecCCCCEEEEE
Confidence            3445689999999999987642 3689999853100  001111111100  00000 000012443332     25799


Q ss_pred             EEEeecCCccceeEEEeeccccc---eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CCC-
Q psy14542        178 IHQVDESDRYRSYQCRGVNKLTG---ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PLP-  252 (371)
Q Consensus       178 i~~~~~~d~~g~y~C~~~~~~~~---~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-  252 (371)
                      |.+++.+| +|.|.|.+.+. .+   ..........|.|..... .+|.+........ +..|+.++|.|.+.+. |.+ 
T Consensus        83 I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~~~~~~~L~V~~~~~-~~P~i~~~~~~~~-~~~g~~v~L~C~~~g~~P~p~  158 (223)
T 1dee_B           83 MNSLRAED-TAVYYCAKVKF-YDPTAPNDYWGQGTLVTVSSGSA-SAPTLFPLVSCEN-SNPSSTVAVGCLAQDFLPDSI  158 (223)
T ss_dssp             ECSCCGGG-CEEEEEEEESS-SSTTCCEEEECCCEEEEECSSCC-BCCEEEEEECTTC-CCSSSEEEEEEEEEEEBSSCC
T ss_pred             ECCCCHHH-CEEEEEEEecc-ccCcccceeecCcEEEEEccCCC-CCCEEEEecCCcc-cCCCCcEEEEEEEEEEeCCCe
Confidence            99999999 99999999876 32   110100112566653111 3444443222223 6789999999999886 776 


Q ss_pred             ceEEEe-CCcccccC--------CceEEecceEEEeccCC--CCCeEEEEEEEcCCCCceeEE
Q psy14542        253 TIKWYK-QDSPVEES--------DRIQRIGSSLSISHVEE--SDSGVWNCVANNSEGQDKMQL  304 (371)
Q Consensus       253 ~v~W~~-~~~~~~~~--------~~~~~~~~~l~i~~~~~--~d~G~Y~C~a~n~~g~~~~~~  304 (371)
                      .+.|++ +|..+...        .......+.|.|.....  +|.|.|+|.|.|..+.....+
T Consensus       159 ~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~  221 (223)
T 1dee_B          159 TFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV  221 (223)
T ss_dssp             EEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred             EEEeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence            899999 88876531        01111234688877776  789999999999998865543

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.76  E-value=1.8e-17  Score=126.94  Aligned_cols=141  Identities=12%  Similarity=0.096  Sum_probs=99.9

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee-------------------CCeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR-------------------NSDEVLVLDRVQREDAGMYQCHVSAD   81 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~-------------------~~~~~l~i~~~~~~d~G~Y~C~~~~~   81 (371)
                      +.+.+|++|+|.|.. . .|.+.+.|++++..+..                   ..+++|.|.+++.+|+|.|+|.+.+.
T Consensus         5 v~~~~G~~VtL~c~~-~-~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~   82 (171)
T 1ccz_A            5 IYGVVYGNVTFHVPS-N-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (171)
T ss_dssp             EEEETTCCEEECCCC-S-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEcCCCEEEcCCC-C-CCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCC
Confidence            678999999999965 3 37889999998764321                   04478999999999999999999887


Q ss_pred             CCCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEE
Q psy14542         82 DDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC  161 (371)
Q Consensus        82 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~  161 (371)
                      .+  ...+.|.|...++    .|...... ....|.|.+.+.+. +.+.|++++..+.....                  
T Consensus        83 ~~--~~~~~L~V~~~~~----~p~i~~~~-~~~~L~C~~~~~p~-p~i~W~~~~~~l~~~~~------------------  136 (171)
T 1ccz_A           83 TD--TMKFFLYVLEMVS----KPMIYWEC-SNATLTCEVLEGTD-VELKLYQGKEHLRSLRQ------------------  136 (171)
T ss_dssp             CS--CEEEEEEEECCCC----CCEEEEET-TTTEEEEECSSCSS-CEEEEEETTEEEEEESS------------------
T ss_pred             CC--cEEEEEEEECcCC----CCEEEEec-CCcEEEEEeCCCCC-cEEEEEECCEECcCCcc------------------
Confidence            66  6677788873221    11111111 11389999998776 89999999987764311                  


Q ss_pred             EEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeee
Q psy14542        162 HIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLS  205 (371)
Q Consensus       162 ~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~  205 (371)
                                  ..+.+.  ..+| .|.|+|.|.|. .+.....
T Consensus       137 ------------~~l~~~--~~~~-~g~Y~C~a~N~-~~~~~~~  164 (171)
T 1ccz_A          137 ------------KTMSYQ--WTNL-RAPFKCKAVNR-VSQESEM  164 (171)
T ss_dssp             ------------SEEEEE--CSCC-SSCEEEEEEET-TEEEEEE
T ss_pred             ------------eEEEEe--ccCC-CceEEEEEEcc-cCcccce
Confidence                        123222  3567 89999999998 5554433

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.76  E-value=1e-18  Score=141.65  Aligned_cols=173  Identities=17%  Similarity=0.249  Sum_probs=112.2

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCC-eeEEEeCC--EEE---e------------------eCCeeEEEEcc
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSS-AKAWLKDG--LVL---R------------------RNSDEVLVLDR   65 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~-~~~W~~~~--~~~---~------------------~~~~~~l~i~~   65 (371)
                      .+.+.. |.. +.+.+|++++|.|.+....+.+ .+.|+|++  ..+   .                  .....+|.|.+
T Consensus        20 ~~~v~~-p~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   97 (234)
T 2j6e_L           20 QSVLTQ-PPS-ASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISG   97 (234)
T ss_dssp             CCCCBC-CSC-CCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEES
T ss_pred             ccEEeC-CCc-EEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECC
Confidence            344444 665 7899999999999665444434 69999852  111   0                  01345899999


Q ss_pred             CCcCCCeEEEEEEEcCCCC---eEEEEEEEEec---ceeeEecCC-ceeeecCCcEEEEEEecCCCCC-ceEEEeeCCEE
Q psy14542         66 VQREDAGMYQCHVSADDDS---AQMSAQVILGG---ELVEIASSN-QVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLV  137 (371)
Q Consensus        66 ~~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~---~~~~~~~~~-~~~~~~g~~v~l~C~~~~~~~~-~~v~W~~~~~~  137 (371)
                      ++.+|+|.|+|.+.+..+.   ....+.|.|..   .+|.+...+ ......|+.++|.|.+.+.+++ +.++|++++..
T Consensus        98 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~  177 (234)
T 2j6e_L           98 LRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAP  177 (234)
T ss_dssp             CCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEE
T ss_pred             CCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEE
Confidence            9999999999999987662   12234555531   233333222 2122468899999999886542 59999999998


Q ss_pred             eeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccce
Q psy14542        138 LRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGA  201 (371)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~  201 (371)
                      +.....    .........|.|         .  ..+.|.|.++..+| .|.|+|.|.|. ...
T Consensus       178 l~~~~~----~~~~~~~~~~~~---------~--~~s~L~i~~~~~~d-~G~Y~C~a~n~-~~~  224 (234)
T 2j6e_L          178 VKAGVE----TTKPSKQSNNKY---------A--ASSYLSLTPEQWKS-HRSYSCQVTHE-GST  224 (234)
T ss_dssp             CCSSEE----ECCCCCCTTSCC---------B--CCEEECCCGGGTTT-SCCEEEEEEBT-TBC
T ss_pred             CCCCcc----ccCceECCCCCE---------E--EEEEEEECHHHcCC-CCeEEEEEEeC-CCc
Confidence            754311    111111122211         1  12578899999999 99999999998 444

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.76  E-value=5.9e-17  Score=132.66  Aligned_cols=173  Identities=18%  Similarity=0.257  Sum_probs=106.0

Q ss_pred             eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEccc--CcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542        107 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRV--QREDAGMYQCHIEDGKYHMLSSGELIIHQVDES  184 (371)
Q Consensus       107 ~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~  184 (371)
                      .+.+|+.++|.|.+.+.+. +.+.|++.....   ....+.....  .....+.|......      .+..|.|.+++.+
T Consensus        15 ~v~~G~~v~L~C~~~~~~~-~~i~W~k~~~~~---~~~~l~~~~~~~~~~~~~r~~~~~~~------~~~~L~I~~v~~~   84 (250)
T 3esu_F           15 SASLGDRVTISCRASQDIR-NYLNWYQQKPDG---TVKLLIYYTSRLQSGVPSRFSGSGSG------TDYSLTISNLEQE   84 (250)
T ss_dssp             EECTTCCEEEEEEESSCCT-TCEEEEEECTTS---CEEEEEETTTEECTTCCTTEEEEEET------TEEEEEESSCCGG
T ss_pred             EeeCCCcEEEEEEecccCC-ceEEEEEECCCC---CCEEEEEEeCCCCCCCCCCEEEeCCC------CEEEEEEccCChh
Confidence            3589999999999998887 799999853100   0000111000  01111222111111      1247999999999


Q ss_pred             CccceeEEEeeccccce-eeeeeccceeeeecchh--------------ccccceeeeeeeeeeeecCCeEEEEEEeecC
Q psy14542        185 DRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKR--------------LLSAAKMFEKHRILNVKKDESVILPCSAQGN  249 (371)
Q Consensus       185 d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~--------------~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~  249 (371)
                      | +|.|.|.+.+. .+. .....   .+.|.....              ..++.....+.... +.+|+.++|.|.+.+.
T Consensus        85 D-~G~Y~C~~~n~-~~~~~~~~~---~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~G~~v~L~C~~~~~  158 (250)
T 3esu_F           85 D-IGTYFCQQGNT-LPWTFGGGT---KLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEL-VKPGASVKISCKDSGY  158 (250)
T ss_dssp             G-CEEEEEEECSS-SSCEECCCE---EEEEC------------------------CEECCCEE-ECTTCCEEEEEECCST
T ss_pred             h-CEEEEEEEeeC-CCceECCCE---EEEEECCCCcccccccccccccCcccceEEecCCceE-EcCCceEEEEEEecCC
Confidence            9 99999999886 332 22222   556653200              01222333344444 8999999999999887


Q ss_pred             C--CCceEEEeC--Cccccc-----------------CCceEEec------ceEEEeccCCCCCeEEEEEEEc
Q psy14542        250 P--LPTIKWYKQ--DSPVEE-----------------SDRIQRIG------SSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       250 p--~~~v~W~~~--~~~~~~-----------------~~~~~~~~------~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      +  .+.+.|+++  +..+..                 ..++....      .+|.|.++..+|+|.|.|.|.+
T Consensus       159 ~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          159 AFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             TGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             cccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            6  678999997  443311                 13343221      2699999999999999999997

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.76  E-value=9.2e-18  Score=129.77  Aligned_cols=166  Identities=14%  Similarity=0.163  Sum_probs=107.4

Q ss_pred             eeeecCCcEEEEEEecCCCCCceEEEeeC-CEEeeeCC-eeEEEEcccCcCCCeeEEEEEeCCceeE-eccceEEEEEee
Q psy14542        106 VVVDVGHRIELHCRVSPKRLSSAKAWLKD-GLVLRRNS-DEVLVLDRVQREDAGMYQCHIEDGKYHM-LSSGELIIHQVD  182 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~-~~~~~~~~-~~~~~~~~~~~~~~g~y~~~~~~~~~~~-~~~~~l~i~~~~  182 (371)
                      ..+.+|++++|.|.+......+.+.|++. +..+.... .......  ....         .+++.+ ..++.|.|.+++
T Consensus         9 v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~--~~~~---------~~R~~l~~~~~sL~I~~v~   77 (180)
T 2dru_A            9 VNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVF--ESVF---------KDRVDLDKTNGALRIYNVS   77 (180)
T ss_dssp             EEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEEC--SSTT---------TTTEEECTTTCCEEECSCC
T ss_pred             EEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEc--chhc---------CCeEEEeCCCccEEEcCCC
Confidence            34489999999999854322379999994 33221100 0000000  0000         135555 456789999999


Q ss_pred             cCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcc
Q psy14542        183 ESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSP  262 (371)
Q Consensus       183 ~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~  262 (371)
                      .+| +|.|+|.+.+. . ......   .|.|.++  ...|.+.         ..+..+.|.|.+...|.|.+.|++++..
T Consensus        78 ~~D-~G~Y~C~v~~~-~-~~~~~~---~L~V~~~--~~~P~i~---------~~~~~v~L~C~~~~gp~p~i~W~~~~~~  140 (180)
T 2dru_A           78 KED-RGDYYMRMLHE-T-EDQWKI---TMEVYEM--VSKPMIY---------WECSNATLTCEVLEGTDVELKLYQGKEH  140 (180)
T ss_dssp             GGG-CEEEEEEEESS-S-EEEEEE---EEEEECC--CCCCEEE---------EEGGGTEEEEECSSCTTCEEEEEETTEE
T ss_pred             HHH-CeEEEEEEEcC-C-eEEEEE---EEEEECC--CCCCEEE---------ecCCCEEEEEEeCCCCCCEEEEEECCeE
Confidence            999 99999999876 3 334444   6666632  1223322         2345699999993338999999999987


Q ss_pred             cccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542        263 VEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI  306 (371)
Q Consensus       263 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  306 (371)
                      +.     ...+.+|.+..  .+|+|.|+|.|.|..+.......+
T Consensus       141 l~-----~~~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~i  177 (180)
T 2dru_A          141 LR-----SLRQKTMSYQW--TNLRAPFKCKAVNRVSQESEMEVV  177 (180)
T ss_dssp             EE-----EESSSEEEEEC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred             Cc-----CCCCCEEEEEE--hhcCccEEEEEecCcCccccceeE
Confidence            75     12345666643  789999999999999887665543

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.76  E-value=7.9e-18  Score=155.05  Aligned_cols=165  Identities=19%  Similarity=0.335  Sum_probs=119.8

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEE--------------eeC----CeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL--------------RRN----SDEVLVLDRVQREDAGMYQCHVSADD   82 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~--------------~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~   82 (371)
                      ..+.+|++++|.|....+.|.+.+.|+|++..+              ...    .+++|.|.+++.+|+|.|+|.+.+..
T Consensus       376 ~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~  455 (581)
T 3o3u_N          376 ITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRN  455 (581)
T ss_dssp             EEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEECTT
T ss_pred             cceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEEcCC
Confidence            678999999999965467788899999975411              000    44589999999999999999999988


Q ss_pred             CCe-EEEEEEEEecc--eeeEecCCceeeecCCc-EEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcC-CC
Q psy14542         83 DSA-QMSAQVILGGE--LVEIASSNQVVVDVGHR-IELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE-DA  156 (371)
Q Consensus        83 ~~~-~~~~~l~v~~~--~~~~~~~~~~~~~~g~~-v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~-~~  156 (371)
                      +.. ...+.|.|...  .|.+...... +..|+. +.|.|.+.+. |. +.++|++++..+................ +.
T Consensus       456 ~~~~~~~~~l~V~~~~~~p~i~~~~~~-~~~~~~~~~l~C~~~~~~P~-~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~  533 (581)
T 3o3u_N          456 GKETKSNYRVRVYQIPGKPEIVDSASE-LTAGVPNKVGTCVSEGSYPA-GTLSWHLDGKPLVPNEKGVSVKEQTRRHPET  533 (581)
T ss_dssp             SCEEEEEEEEEEEBCCCCCEEESCCSE-ECTTSCEEEEEEEEEEEBSC-CEEEEEETTEECCTTSTTEEEEEEEEECTTT
T ss_pred             CceeEEEEEEEEEcCCCCCEEEcCCcc-cccCCceeEEEEECCCCCCC-CeEEEEECCEECCCCCCeEEEEeeeEEcCCC
Confidence            877 67788888732  3334433333 444544 5679999884 65 8999999999987654433333333322 67


Q ss_pred             eeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccc
Q psy14542        157 GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKL  198 (371)
Q Consensus       157 g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~  198 (371)
                      |.|++.           +.|.|..++..|+.|.|+|.+.|..
T Consensus       534 g~y~~~-----------s~L~i~~~~~~d~~~~y~C~~~n~~  564 (581)
T 3o3u_N          534 GLFTLQ-----------SELMVTPARGGDPRPTFSCSFSPGL  564 (581)
T ss_dssp             CCEEEE-----------EEEEECCCTTSCSCCCEEEEEECSS
T ss_pred             ceEEEE-----------EEEEEEeccccCCCceEEEEEeccC
Confidence            777652           6799999885554899999999983

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.76  E-value=8.3e-17  Score=134.12  Aligned_cols=199  Identities=17%  Similarity=0.215  Sum_probs=117.5

Q ss_pred             CCceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceE
Q psy14542        103 SNQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGEL  176 (371)
Q Consensus       103 ~~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l  176 (371)
                      +....+.+|++++|.|.+.+.+ ..+.+.|++++...  ............  . .........+++.+..     ...|
T Consensus        33 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~--~~~~l~~~~~~~--~-~~~~~~~~~~R~~~~~~~~~~~~sL  107 (282)
T 1qok_A           33 SGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQ--GLEWIGWIDPEN--G-DTEYAPKFQGKATFTTDTSSNTAYL  107 (282)
T ss_dssp             CCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTC--CEEEEEEEETTT--T-EEEECGGGBTTEEEEEETTTTEEEE
T ss_pred             CCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCC--CcEEEEEEecCC--C-ccccCchhcCcEEEEEecCCCeEEE
Confidence            3344558999999999998765 23789999954100  000001110000  0 0000000012333322     2579


Q ss_pred             EEEEeecCCccceeEEEeeccccce--eeeeeccceeeeecchh----------ccccceeeeeeeeeeeecCCeEEEEE
Q psy14542        177 IIHQVDESDRYRSYQCRGVNKLTGA--SLLSVNRGRLSLTENKR----------LLSAAKMFEKHRILNVKKDESVILPC  244 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~~~~~~~--~~~~~~~~~l~v~~~~~----------~~~p~~~~~~~~~~~~~~g~~~~l~C  244 (371)
                      .|.+++.+| +|.|.|.+.+. .+.  .........|.|.....          ..++.+...+.... +.+|++++|.|
T Consensus       108 ~I~~v~~~D-sG~Y~C~~~n~-~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-v~~G~~v~L~C  184 (282)
T 1qok_A          108 QLSSLTSED-TAVYYCNEGTP-TGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMS-ASPGEKVTITC  184 (282)
T ss_dssp             EECSCCGGG-CEEEEEEEECS-SSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEE-ECTTCCEEEEE
T ss_pred             EECcCChhh-CEEEEEEeccC-CCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEE-EcCCCcEEEEE
Confidence            999999999 99999999987 431  11100112566663211          01233444444555 89999999999


Q ss_pred             EeecCCCCceEEEe--CCcccc------------cCCceEE----ecceEEEeccCCCCCeEEEEEEEcCCCC-ceeEEE
Q psy14542        245 SAQGNPLPTIKWYK--QDSPVE------------ESDRIQR----IGSSLSISHVEESDSGVWNCVANNSEGQ-DKMQLF  305 (371)
Q Consensus       245 ~~~~~p~~~v~W~~--~~~~~~------------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~  305 (371)
                      .+.+.+ +.+.|++  ++..+.            ...++..    ...+|.|.++..+|+|.|+|.|.|..+. ......
T Consensus       185 ~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~  263 (282)
T 1qok_A          185 SASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTK  263 (282)
T ss_dssp             EESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEE
T ss_pred             EecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEE
Confidence            999988 8999999  555441            1234432    1247999999999999999999986432 223355


Q ss_pred             EEEec
Q psy14542        306 IQYAH  310 (371)
Q Consensus       306 l~v~~  310 (371)
                      |.|..
T Consensus       264 l~V~~  268 (282)
T 1qok_A          264 LELKR  268 (282)
T ss_dssp             EEEC-
T ss_pred             EEEec
Confidence            66654

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.76  E-value=1.4e-18  Score=138.71  Aligned_cols=165  Identities=16%  Similarity=0.258  Sum_probs=110.5

Q ss_pred             CCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--CEEEe---------------------eCCeeEEEEccCCcCCCeE
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--GLVLR---------------------RNSDEVLVLDRVQREDAGM   73 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~~~~~---------------------~~~~~~l~i~~~~~~d~G~   73 (371)
                      |.. +.+.+|++++|.|. ..+.+.+.+.|+|+  +..+.                     .....+|.|.+++.+|+|.
T Consensus         6 p~~-~~v~~G~~v~L~C~-~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   83 (212)
T 1nfd_E            6 PSS-ASVTVGETVKITCS-GDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAA   83 (212)
T ss_dssp             CSE-EEEETTSCCCEEEE-ETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSE
T ss_pred             CCe-EEEeCCCcEEEEEe-cCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEE
Confidence            555 78999999999996 45556677999984  22221                     0144589999999999999


Q ss_pred             EEEEEEcCCCCe---EEEEEEEEec---ceeeEecCCc-eeeecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeE
Q psy14542         74 YQCHVSADDDSA---QMSAQVILGG---ELVEIASSNQ-VVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEV  145 (371)
Q Consensus        74 Y~C~~~~~~~~~---~~~~~l~v~~---~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~  145 (371)
                      |+|.+.+..+..   .....|.|..   .+|.+...+. ....+|+.++|.|.+.+.++ .+.++|++++..+.......
T Consensus        84 Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~  163 (212)
T 1nfd_E           84 YYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTT  163 (212)
T ss_dssp             EEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCC
T ss_pred             EEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecC
Confidence            999999632211   1224455531   3455544332 22357999999999988743 37999999999876542100


Q ss_pred             EEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccce
Q psy14542        146 LVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGA  201 (371)
Q Consensus       146 ~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~  201 (371)
                          .......| |         .  ..+.|.|.++..+| .|.|+|.|.|. .+.
T Consensus       164 ----~~~~~~~~-~---------~--~~s~L~i~~~~~~d-~G~Y~C~a~n~-~~~  201 (212)
T 1nfd_E          164 ----KPSKQGQN-Y---------M--TSSYLSLTADQWKS-HNRVSCQVTHE-GET  201 (212)
T ss_dssp             ----CCBCSSSC-E---------E--EEEBCCEEHHHHHT-CSCEEEEEECT-TTT
T ss_pred             ----CceecCCC-c---------e--EEEEEEEchhhcCC-CCeEEEEEEeC-Cce
Confidence                00111111 2         1  12679999999999 99999999998 443

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.76  E-value=3.5e-18  Score=136.78  Aligned_cols=166  Identities=13%  Similarity=0.204  Sum_probs=107.9

Q ss_pred             eecCCcEEEEEEecCCC---CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542        108 VDVGHRIELHCRVSPKR---LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES  184 (371)
Q Consensus       108 ~~~g~~v~l~C~~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~  184 (371)
                      +.+|++++|.|.+.+.+   ..+.++|+|++..+.......  .   .....|         ++..  .+.|.|.+++.+
T Consensus        23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~--~---~~~~~~---------~~~~--~~~L~I~~~~~~   86 (218)
T 2rgs_A           23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQT--H---REDYNS---------TIRV--VSTLPIQHQDWM   86 (218)
T ss_dssp             HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEE--E---EETTTT---------EEEE--EEEEECCHHHHH
T ss_pred             hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCccccc--c---cccCCC---------eEEE--EEEEEEcHHHcC
Confidence            57899999999998763   237999999997765321110  0   001112         2221  257999999999


Q ss_pred             CccceeEEEeecccccee--eeeecccee--eeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-CCCC-ceEEEe
Q psy14542        185 DRYRSYQCRGVNKLTGAS--LLSVNRGRL--SLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLP-TIKWYK  258 (371)
Q Consensus       185 d~~g~y~C~~~~~~~~~~--~~~~~~~~l--~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~  258 (371)
                      | .|.|+|.+.+. .+..  ...+   .+  .+.     .+|.+...+.... ...|+.+.|.|.+.| +|.+ .++|++
T Consensus        87 D-~g~Y~C~~~~~-~~~~~~~~~v---~~~~~~~-----~~P~v~~~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k  155 (218)
T 2rgs_A           87 S-GKEFKCKVNNK-DLPSPIERTI---SKIKGLV-----RAPQVYILPPPAE-QLSRKDVSLTCLVVGFNPGDISVEWTS  155 (218)
T ss_dssp             T-TCCEEEEEEET-TCSSCEEEEE---CCCCCCC-----BCCEEEEECCCGG-GTTSSEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             C-CCeEEEEEECC-cCCCcceEEE---eecCCCC-----CCCEEEEECCChH-HhcCCceEEEEEEEeeeCCCcEEEEEE
Confidence            9 99999999987 4432  1111   11  222     5666655444333 335999999999998 6765 899999


Q ss_pred             CCcccccCCc--eE-Eecc------eEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        259 QDSPVEESDR--IQ-RIGS------SLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       259 ~~~~~~~~~~--~~-~~~~------~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      +|..+.....  .. ..++      .|.|.....+|.|.|+|.|.|.....
T Consensus       156 ~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~~  206 (218)
T 2rgs_A          156 NGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLKN  206 (218)
T ss_dssp             TTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSGG
T ss_pred             CCEeccCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCCC
Confidence            9987643221  11 1222      35555555567999999999987653

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.76  E-value=5.5e-18  Score=129.86  Aligned_cols=161  Identities=16%  Similarity=0.163  Sum_probs=107.4

Q ss_pred             eecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe-ccceEEEEEeecCCc
Q psy14542        108 VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML-SSGELIIHQVDESDR  186 (371)
Q Consensus       108 ~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~-~~~~l~i~~~~~~d~  186 (371)
                      ..+|++++|.|.+.. +. +.+.|++++..+...........       +.|     .++..+. .+++|.|.+++..| 
T Consensus         7 ~~~G~~VtL~c~~~~-~~-~~i~W~~~~~~i~~~~~~~~~~~-------~~~-----~~R~~~~~~~~sL~I~~v~~~D-   71 (171)
T 1ccz_A            7 GVVYGNVTFHVPSNV-PL-KEVLWKKQKDKVAELENSEFRAF-------SSF-----KNRVYLDTVSGSLTIYNLTSSD-   71 (171)
T ss_dssp             EETTCCEEECCCCSS-CC-SCEEEEETTEEEEEEETTEEEEC-------GGG-----TTSEEECTTTCCEEECSCCGGG-
T ss_pred             EEcCCCEEEcCCCCC-Cc-ceEEEEeCCcEEEEEcCCCcccc-------ccc-----CCcEEEeCCCCeEEECCCChhh-
Confidence            478999999999854 54 89999998875432110000000       000     2233332 45789999999999 


Q ss_pred             cceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccC
Q psy14542        187 YRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEES  266 (371)
Q Consensus       187 ~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~  266 (371)
                      +|.|.|.+.+. .+  ...+   .|.|..+.  ..|.+....        . ...|.|.+.+.|.|++.|++++..+...
T Consensus        72 sG~Y~C~~~n~-~~--~~~~---~L~V~~~~--~~p~i~~~~--------~-~~~L~C~~~~~p~p~i~W~~~~~~l~~~  134 (171)
T 1ccz_A           72 EDEYEMESPNI-TD--TMKF---FLYVLEMV--SKPMIYWEC--------S-NATLTCEVLEGTDVELKLYQGKEHLRSL  134 (171)
T ss_dssp             CEEEEEECTTC-CS--CEEE---EEEEECCC--CCCEEEEET--------T-TTEEEEECSSCSSCEEEEEETTEEEEEE
T ss_pred             CceEEEEEeCC-CC--cEEE---EEEEECcC--CCCEEEEec--------C-CcEEEEEeCCCCCcEEEEEECCEECcCC
Confidence            99999999987 55  3444   66666321  223332111        1 1379999999899999999999877643


Q ss_pred             CceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEE
Q psy14542        267 DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ  307 (371)
Q Consensus       267 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  307 (371)
                      .     ...|.+.  ...|+|.|+|.|.|..+....++.|.
T Consensus       135 ~-----~~~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l~  168 (171)
T 1ccz_A          135 R-----QKTMSYQ--WTNLRAPFKCKAVNRVSQESEMEVVN  168 (171)
T ss_dssp             S-----SSEEEEE--CSCCSSCEEEEEEETTEEEEEEECCC
T ss_pred             c-----ceEEEEe--ccCCCceEEEEEEcccCcccceeEEe
Confidence            2     2334443  37789999999999999887766553

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.76  E-value=1.2e-17  Score=133.80  Aligned_cols=164  Identities=13%  Similarity=0.252  Sum_probs=106.1

Q ss_pred             CCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeC--CEEEe------------------e----------CCeeEEEEcc
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKD--GLVLR------------------R----------NSDEVLVLDR   65 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~--~~~~~------------------~----------~~~~~l~i~~   65 (371)
                      |.. +.+.+|++++|.|.+.... +.+.+.|+|+  +..+.                  .          ....+|.|.+
T Consensus         7 p~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (219)
T 1c1e_H            7 SGP-ELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINN   85 (219)
T ss_dssp             CCC-EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECS
T ss_pred             CCC-eEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECC
Confidence            444 7899999999999665332 3678999986  32211                  0          0246899999


Q ss_pred             CCcCCCeEEEEEEEcCCCCe----EEEEEEEEecc---eeeEec-CCceeeecCCcEEEEEEecC-CCCCceEEEeeCCE
Q psy14542         66 VQREDAGMYQCHVSADDDSA----QMSAQVILGGE---LVEIAS-SNQVVVDVGHRIELHCRVSP-KRLSSAKAWLKDGL  136 (371)
Q Consensus        66 ~~~~d~G~Y~C~~~~~~~~~----~~~~~l~v~~~---~~~~~~-~~~~~~~~g~~v~l~C~~~~-~~~~~~v~W~~~~~  136 (371)
                      ++.+|+|.|+|.+.+..+..    ...+.|.|...   +|.+.. .+...+.+|+.++|.|.+.+ .|.+..+.|++++.
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~  165 (219)
T 1c1e_H           86 LKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL  165 (219)
T ss_dssp             CCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCCc
Confidence            99999999999999875321    13456676632   233332 22333468999999999998 66623999999987


Q ss_pred             EeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecccccee
Q psy14542        137 VLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS  202 (371)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~  202 (371)
                      .+.....     ....  ..|         .+..  .+.|.| .....| .|.|+|.|.|. .+..
T Consensus       166 ~~~~~~~-----~~~~--~~~---------~~~~--~s~L~i-~~~~~d-~g~Y~C~a~n~-~~~~  210 (219)
T 1c1e_H          166 SSGVHTF-----PAVL--QSD---------LYTL--SSSVTV-PSSPRP-SETVTCNVAHP-ASST  210 (219)
T ss_dssp             CTTEEEC-----CCEE--SSS---------CEEE--EEEEEE-ESSSTT-TSCCEEEEEEG-GGTE
T ss_pred             ccceEec-----CCcc--cCC---------eEEE--EEEEEE-ecccCC-CCEEEEEEEeC-CCCc
Confidence            5321100     0000  012         2211  256888 555557 79999999998 5543

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.75  E-value=1.1e-17  Score=137.41  Aligned_cols=180  Identities=19%  Similarity=0.244  Sum_probs=110.5

Q ss_pred             eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe-----ccceEEEEE
Q psy14542        106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML-----SSGELIIHQ  180 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~-----~~~~l~i~~  180 (371)
                      ..+.+|++++|.|.+.+.+. +.+.|++....  .............  .     .....+++.+.     ....|.|.+
T Consensus        13 ~~v~~G~~v~L~C~~~~~~~-~~v~W~r~~~~--~~~~~~~~~~~~~--~-----~~~~~~r~~~~~~~~~~~~sL~I~~   82 (256)
T 3tf7_C           13 VTVSEGASLQLRCKYSYSAT-PYLFWYVQYPR--QGPQMLLKYYSGD--P-----VVQGVNGFEAEFSKSDSSFHLRKAS   82 (256)
T ss_dssp             EEEETTSCEEECCEEECSSC-CEEEEEEECTT--SCCEEEEEECSSC--S-----EEECSTTCEEEEETTTTEEEEEESS
T ss_pred             EEecCCCeEEEEEEeCCCCC-ceEEEEEECCC--CCeEEEEEEccCC--c-----ccccCCCeEEEEcCCCCEEEEEECC
Confidence            34589999999999988766 89999983210  0001111110000  0     00012233331     235799999


Q ss_pred             eecCCccceeEEEeeccccc-eeeeeeccceeeeecc---------------hhccccceeeeeeeeeeeecCCeEEEEE
Q psy14542        181 VDESDRYRSYQCRGVNKLTG-ASLLSVNRGRLSLTEN---------------KRLLSAAKMFEKHRILNVKKDESVILPC  244 (371)
Q Consensus       181 ~~~~d~~g~y~C~~~~~~~~-~~~~~~~~~~l~v~~~---------------~~~~~p~~~~~~~~~~~~~~g~~~~l~C  244 (371)
                      ++.+| +|.|.|.+.+. .+ ..........|.|...               ....+|.+...+.... +.+|+.++|.|
T Consensus        83 v~~~D-sG~Y~C~~~~~-~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~-v~~G~~v~L~C  159 (256)
T 3tf7_C           83 VHRSD-SAVYFCAVSAK-GTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKV-TVTGENVTLSC  159 (256)
T ss_dssp             CCGGG-CSEEEEEEECT-TCTTCEEECCCEEEEEEC---------------------CCEEESCSEEE-EETTCCEEECE
T ss_pred             CCccc-CEEEEEEEecC-CCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEE-EeCCCcEEEEE
Confidence            99999 99999999886 32 1111111125666531               0123555666666655 88999999999


Q ss_pred             EeecCCCCceEEEeCCc--ccc---------------cCCceEE-----ecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        245 SAQGNPLPTIKWYKQDS--PVE---------------ESDRIQR-----IGSSLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       245 ~~~~~p~~~v~W~~~~~--~~~---------------~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      .+.+. .+.+.|++...  .+.               ...++..     ...+|.|.++..+|+|.|+|.|.|..|.
T Consensus       160 ~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~  235 (256)
T 3tf7_C          160 RQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQ  235 (256)
T ss_dssp             EECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTE
T ss_pred             EcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCc
Confidence            99876 67899998432  110               0122221     2247999999999999999999998764

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.75  E-value=5e-17  Score=133.54  Aligned_cols=163  Identities=19%  Similarity=0.340  Sum_probs=105.0

Q ss_pred             EEEeccCcEEEEEEecCCCC--CCeeEEEeC--CE---EEe-------------------------eCCeeEEEEccCCc
Q psy14542         21 VVVDVGHRIELHCRVSPKRL--SSAKAWLKD--GL---VLR-------------------------RNSDEVLVLDRVQR   68 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~--~~~~~W~~~--~~---~~~-------------------------~~~~~~l~i~~~~~   68 (371)
                      ..+.+|++++|.|.+. +.+  .+.+.|+|.  +.   .+.                         .....+|.|.+++.
T Consensus        12 ~~v~~G~~v~L~C~~~-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   90 (256)
T 3umt_A           12 ELVKPGASVKISCKTS-GYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTS   90 (256)
T ss_dssp             EEECTTCCEEEEEEEE-SSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             eEEcCCCCEEEEEEEe-cccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCc
Confidence            6799999999999754 333  578999973  11   110                         00345699999999


Q ss_pred             CCCeEEEEEEEcCC----CCeEEEEEEEEecc---------------eeeEecCCc-eeeecCCcEEEEEEecCCCCCce
Q psy14542         69 EDAGMYQCHVSADD----DSAQMSAQVILGGE---------------LVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSA  128 (371)
Q Consensus        69 ~d~G~Y~C~~~~~~----~~~~~~~~l~v~~~---------------~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~  128 (371)
                      +|+|.|.|.+.+..    +.......|.|...               ++.+...+. ..+.+|++++|.|.+.+.+. +.
T Consensus        91 ~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~-~~  169 (256)
T 3umt_A           91 EDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIG-SN  169 (256)
T ss_dssp             GGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCT-TC
T ss_pred             ccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCC-cE
Confidence            99999999998762    22233466777632               444555444 44589999999999998777 69


Q ss_pred             EEEeeCC--EEeeeCCeeEEEEccc--CcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        129 KAWLKDG--LVLRRNSDEVLVLDRV--QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       129 v~W~~~~--~~~~~~~~~~~~~~~~--~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      +.|+|..  ..+.    . +.....  .....+.|.....      .....|.|.+++.+| +|.|.|.+.+.
T Consensus       170 v~W~k~~~~~~~~----~-~~~~~~~~~~~~~~r~~~~~~------~~~~~L~I~~v~~~D-~G~Y~C~~~~~  230 (256)
T 3umt_A          170 LNWLQQKPDGTIK----R-LIYATSSLDSGVPKRFSGSRS------GSDYSLTISSLESED-FVDYYCLQYAS  230 (256)
T ss_dssp             EEEEEECTTCCEE----E-EEETTTEECTTSCTTEEEEEE------TTEEEEEECSCCGGG-CSEEEEEECSS
T ss_pred             EEEEEECCCCCcE----E-EEEeccccCCccCCCEEEecC------CCEEEEEECCCChhH-CEEEEEEEeeC
Confidence            9999842  1111    0 000000  0001111211110      112469999999999 99999999885

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.75  E-value=4.6e-17  Score=133.84  Aligned_cols=175  Identities=20%  Similarity=0.298  Sum_probs=108.3

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCC-CCCCeeEEEeCC----EEEe-------------------------eCCeeEE
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDG----LVLR-------------------------RNSDEVL   61 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~~----~~~~-------------------------~~~~~~l   61 (371)
                      .+.+..+.+..+.+|++++|.|.+... .+.+.+.|+|..    ....                         .....+|
T Consensus         9 ~v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   88 (257)
T 3gkz_A            9 EVQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYL   88 (257)
T ss_dssp             CEEEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEE
T ss_pred             cEEEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEE
Confidence            333333333679999999999976542 356789999821    1111                         0034579


Q ss_pred             EEccCCcCCCeEEEEEEEcCCCC----eEEEEEEEEecc-------------eeeEecCCc-eeeecCCcEEEEEEecCC
Q psy14542         62 VLDRVQREDAGMYQCHVSADDDS----AQMSAQVILGGE-------------LVEIASSNQ-VVVDVGHRIELHCRVSPK  123 (371)
Q Consensus        62 ~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~~l~v~~~-------------~~~~~~~~~-~~~~~g~~v~l~C~~~~~  123 (371)
                      .|.+++.+|+|.|.|.+.+..+.    ......|.|...             ++.+...+. ..+.+|++++|.|.+.+.
T Consensus        89 ~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~  168 (257)
T 3gkz_A           89 QLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSS  168 (257)
T ss_dssp             EECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSC
T ss_pred             EECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccC
Confidence            99999999999999999986221    123456777633             244555554 445899999999999987


Q ss_pred             CCCceEEEeeCC--EEeeeCCeeEEEEcc-cCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        124 RLSSAKAWLKDG--LVLRRNSDEVLVLDR-VQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       124 ~~~~~v~W~~~~--~~~~~~~~~~~~~~~-~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      +.+..+.|++..  ..+.    ..+.... ......+.|.....      .....|.|.+++.+| +|.|.|.+.+.
T Consensus       169 ~~~~~v~W~k~~~~~~~~----~~~~~~~~~~~~~~~r~~~~~~------~~~~~L~I~~v~~~D-~G~Y~C~~~~~  234 (257)
T 3gkz_A          169 VSSSHLYWYQQKPGSSPK----LWIYSTSNLASGVPARFSGSGS------GTSYSLTISSMEAED-AASYFCHQWSS  234 (257)
T ss_dssp             CCGGGEEEEEECTTSCCE----EEEETTTEECTTCCTTEEEEEE------TTEEEEEESSCCGGG-CEEEEEEECSS
T ss_pred             ccceEEEEEEECCCCCcE----EEEEEccccCCCcCCCEEEecC------CCEEEEEECCCChHH-CEEEEEEEccC
Confidence            763389999842  2111    0000000 00000111211100      012469999999999 99999999875

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.75  E-value=7.7e-17  Score=132.44  Aligned_cols=172  Identities=20%  Similarity=0.339  Sum_probs=107.4

Q ss_pred             CCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeCC-----EEEee------------------CCeeEEEEccCCcCCCe
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDG-----LVLRR------------------NSDEVLVLDRVQREDAG   72 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~-----~~~~~------------------~~~~~l~i~~~~~~d~G   72 (371)
                      |.. +.+.+|++++|.|.+.... +.+.+.|+|++     ..+..                  ....+|.|.+++.+|+|
T Consensus         9 p~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG   87 (256)
T 3ux9_B            9 PPS-VSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEA   87 (256)
T ss_dssp             CSE-EEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCc-EEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCE
Confidence            444 7899999999999665432 67789999831     11110                  03458999999999999


Q ss_pred             EEEEEEEcCCCCe---EEEEEEEEecce--------------------eeEecCCceeeecCCcEEEEEEecCCCC-Cce
Q psy14542         73 MYQCHVSADDDSA---QMSAQVILGGEL--------------------VEIASSNQVVVDVGHRIELHCRVSPKRL-SSA  128 (371)
Q Consensus        73 ~Y~C~~~~~~~~~---~~~~~l~v~~~~--------------------~~~~~~~~~~~~~g~~v~l~C~~~~~~~-~~~  128 (371)
                      .|.|.+.+..+..   .....|.|...+                    +.+...+...+.+|++++|.|.+.+.+. .+.
T Consensus        88 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~  167 (256)
T 3ux9_B           88 DYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSYA  167 (256)
T ss_dssp             EEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSE
T ss_pred             EEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCcccccE
Confidence            9999999865432   233566666322                    1344444455689999999999987652 379


Q ss_pred             EEEeeCC--EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEEEEEeecCCccceeEEEeecc
Q psy14542        129 KAWLKDG--LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       129 v~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      +.|+++.  ..+.    ....+....   ...+......+++.+..     ...|.|.+++.+| +|.|+|.+.+.
T Consensus       168 v~W~r~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D-sG~Y~C~~~~~  235 (256)
T 3ux9_B          168 MSWVRQAPGKGLE----WVSAISGSG---GSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAED-TAVYYCARYID  235 (256)
T ss_dssp             EEEEEECTTCCEE----EEEEECSSS---SCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG-CEEEEEEEEET
T ss_pred             EEEEEECCCCCcE----EEEEEccCC---CceecCccccceEEEEecCCCCEEEEEECCCChhh-CEEEEEEEEcC
Confidence            9999862  2211    111111100   00000000012333221     2359999999999 99999999986

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.75  E-value=9.6e-17  Score=131.90  Aligned_cols=165  Identities=19%  Similarity=0.302  Sum_probs=105.4

Q ss_pred             EEEeccCcEEEEEEecCCC-CCCeeEEEeC--C---EEEe--------------e----------CCeeEEEEccCCcCC
Q psy14542         21 VVVDVGHRIELHCRVSPKR-LSSAKAWLKD--G---LVLR--------------R----------NSDEVLVLDRVQRED   70 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~--~---~~~~--------------~----------~~~~~l~i~~~~~~d   70 (371)
                      ..+.+|++++|.|.+.... +.+.+.|+|+  +   ..+.              .          ....+|.|.+++.+|
T Consensus        10 ~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   89 (257)
T 1f3r_B           10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDD   89 (257)
T ss_dssp             SEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTTC
T ss_pred             ccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCccc
Confidence            5799999999999765332 3678999984  2   1110              0          134589999999999


Q ss_pred             CeEEEEEEEcCCC------Ce---EEEEEEEEecce--------------eeEecCCce-eeecCCcEEEEEEecCCCCC
Q psy14542         71 AGMYQCHVSADDD------SA---QMSAQVILGGEL--------------VEIASSNQV-VVDVGHRIELHCRVSPKRLS  126 (371)
Q Consensus        71 ~G~Y~C~~~~~~~------~~---~~~~~l~v~~~~--------------~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~  126 (371)
                      +|.|.|.+.+..|      ..   .....|.|...+              +.+...+.. .+.+|++++|.|.+.+.+. 
T Consensus        90 sG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~-  168 (257)
T 1f3r_B           90 TGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNIN-  168 (257)
T ss_dssp             CEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCB-
T ss_pred             CEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCC-
Confidence            9999999998743      11   123567776321              223333333 3489999999999998877 


Q ss_pred             ceEEEee--CCEEeeeCCeeEEEEcc-cCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        127 SAKAWLK--DGLVLRRNSDEVLVLDR-VQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       127 ~~v~W~~--~~~~~~~~~~~~~~~~~-~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      +.+.|++  ++..+..    .+.... ......+.|....      ......|.|.+++.+| +|.|.|.+.|.
T Consensus       169 ~~v~W~k~~~g~~~~~----~~~~~~~~~~~~~~r~~~~~------~~~~~~L~I~~v~~~D-~G~Y~C~a~n~  231 (257)
T 1f3r_B          169 NYLAWYQQKLGEAPKL----LIYNTNSLQTGIPSRFSGSG------SGTDYTLTISSLQPED-VATYFCYQYNN  231 (257)
T ss_dssp             TCEEEEEECTTSCCEE----EEETTTEECTTCCTTEEEEE------EBTEEEEEECSCCGGG-CSEEEEEEESS
T ss_pred             CcEEEEEECCCCCcEE----EEEEccCCCCCcCCCEEEec------CCCEEEEEECCCChhh-CEEEEEEEeCC
Confidence            7999999  4442211    000000 0000011111110      0112479999999999 99999999987

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.75  E-value=1.5e-17  Score=135.85  Aligned_cols=182  Identities=13%  Similarity=0.200  Sum_probs=110.8

Q ss_pred             eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEc--ccCcCCCeeEEEEEeCCceeEe----ccceEEEE
Q psy14542        106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLD--RVQREDAGMYQCHIEDGKYHML----SSGELIIH  179 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~--~~~~~~~g~y~~~~~~~~~~~~----~~~~l~i~  179 (371)
                      ..+.+|+.++|.|.+.+.+. +.+.|+|....  ......+...  +-.....+.|     .+++.+.    .+..|.|.
T Consensus        11 ~~v~~G~~v~L~C~~~~~~~-~~v~W~r~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~r~~~~~~~~~~~~L~I~   82 (246)
T 4dzb_B           11 VISKSGTSVKIECRSLDFQA-TTMFWYRQFPK--QSLMLMATSNEGSKATYEQGVE-----KDKFLINHASLTLSTLTVT   82 (246)
T ss_dssp             EEEETTSCEEEEEEESSSCC-CSEEEEEECTT--SCCEEEEEECTTSCCEECTTCC-----GGGEEEEEEETTEEEEEEC
T ss_pred             EEEeCCCcEEEEeEecCCCc-eEEEEEEECCC--CCcEEEEEEccCCCceecCccc-----CCcEEEEecCCCEEEEEEC
Confidence            34589999999999988776 89999983210  0001111111  0000000000     1233322    13579999


Q ss_pred             EeecCCccceeEEEeeccccc----eeeeeeccceeeeecch-hccccceeee-eeeeeeeecCCeEEEEEEeecCCCC-
Q psy14542        180 QVDESDRYRSYQCRGVNKLTG----ASLLSVNRGRLSLTENK-RLLSAAKMFE-KHRILNVKKDESVILPCSAQGNPLP-  252 (371)
Q Consensus       180 ~~~~~d~~g~y~C~~~~~~~~----~~~~~~~~~~l~v~~~~-~~~~p~~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~-  252 (371)
                      +++.+| +|.|.|.+.+. .+    ......   .+.|.... ...+|.+... +.... +..|+.++|.|.+.|.+++ 
T Consensus        83 ~v~~~D-~G~Y~C~~~~~-~~~~~~~~~~~~---~l~V~~~~~~~~~P~i~~~~~~~~~-~~~g~~v~L~C~~~g~~p~~  156 (246)
T 4dzb_B           83 SAHPED-SSFYICSARTS-GDFGEQFFGPGT---RLTVLEDLKNVFPPEVAVFEPSEAE-ISHTQKATLVCLATGFYPDH  156 (246)
T ss_dssp             SCCGGG-CEEEEEEECCS-SGGGCCEECCCE---EEEEESCGGGCBCCEEEEECCCHHH-HHHHSEEEEEEEEEEEBSSC
T ss_pred             CCCHHH-CEEEEEEEecC-CCCcceEEcCCE---EEEEecCCCcccCCceEeecCCchh-ccCCCcEEEEEEEccCcCCc
Confidence            999999 99999999865 22    111222   55555311 1134444332 22223 5669999999999986654 


Q ss_pred             -ceEEEeCCcccccCCceE---------------EecceEEEeccCCCC-CeEEEEEEEcCCCCce
Q psy14542        253 -TIKWYKQDSPVEESDRIQ---------------RIGSSLSISHVEESD-SGVWNCVANNSEGQDK  301 (371)
Q Consensus       253 -~v~W~~~~~~~~~~~~~~---------------~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~  301 (371)
                       .+.|+++|..+....+..               ...+.|.|.....+| +|.|+|+|.|......
T Consensus       157 ~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~  222 (246)
T 4dzb_B          157 VELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  222 (246)
T ss_dssp             EEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             eEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence             899999998776532211               112348888888888 9999999999876654

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.75  E-value=8.6e-17  Score=132.22  Aligned_cols=199  Identities=16%  Similarity=0.170  Sum_probs=115.8

Q ss_pred             CceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEE
Q psy14542        104 NQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELI  177 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~  177 (371)
                      +...+.+|++++|.|.+.+.+ ....+.|++....  ......+.+...   ....+ .....+++.+..     ...|.
T Consensus        16 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~--~~~~~~~~~~~~---~~~~~-~~~~~~r~~~~~~~~~~~~~L~   89 (257)
T 3gkz_A           16 GPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPG--NKLDYMGYISYR---GSTYY-NPSLKSRISITRDTSKNQVYLQ   89 (257)
T ss_dssp             CCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTT--SCEEEEEEEETT---CCEEE-CTTTTTTEEEEEEGGGTEEEEE
T ss_pred             CCeEEcCCCcEEEEEEEEcccccceEEEEEEECCC--CCcEEEEEEecC---CcEEe-cccccccEEEEEecCCceEEEE
Confidence            344568999999999998743 2379999984210  000011111100   00000 000012333332     23699


Q ss_pred             EEEeecCCccceeEEEeeccc---cceeeeeeccceeeeecchh---------ccccceeeeeeeeeeeecCCeEEEEEE
Q psy14542        178 IHQVDESDRYRSYQCRGVNKL---TGASLLSVNRGRLSLTENKR---------LLSAAKMFEKHRILNVKKDESVILPCS  245 (371)
Q Consensus       178 i~~~~~~d~~g~y~C~~~~~~---~~~~~~~~~~~~l~v~~~~~---------~~~p~~~~~~~~~~~~~~g~~~~l~C~  245 (371)
                      |.+++.+| +|.|.|.+.+..   ........   .|.|.....         ..++.+...+.... +.+|++++|.|.
T Consensus        90 I~~v~~~D-sG~Y~C~~~n~~~~~~~~~~~~~---~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~-v~~G~~v~L~C~  164 (257)
T 3gkz_A           90 LKSVSSED-TATYYCSYFDSDDYAMEYWGQGT---SVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMS-ASPGEKVTLTCS  164 (257)
T ss_dssp             ECSCCGGG-CEEEEEEEECTTCTTCEEECCCE---EEEEC---------CTTCCCCCCEECSCSEEE-ECTTCCEEEEEE
T ss_pred             ECCCChhh-CEEEEEEEecCCCcceeEEcCCE---EEeecCchhhcccccCCCccceEEEcCCceEE-EeCCCcEEEEEE
Confidence            99999999 999999998851   11111222   566653210         11344555555555 899999999999


Q ss_pred             eecCCCC-ceEEEeC--Cccccc------------CCceEEe----cceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEE
Q psy14542        246 AQGNPLP-TIKWYKQ--DSPVEE------------SDRIQRI----GSSLSISHVEESDSGVWNCVANNSEGQD-KMQLF  305 (371)
Q Consensus       246 ~~~~p~~-~v~W~~~--~~~~~~------------~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~  305 (371)
                      +.+.+.+ .+.|++.  +..+..            ..++...    ..+|.|.++..+|+|.|.|.|.+..... ..-..
T Consensus       165 ~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~  244 (257)
T 3gkz_A          165 ASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTK  244 (257)
T ss_dssp             ESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEE
T ss_pred             EccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEE
Confidence            9988877 8999984  322210            1333321    2359999999999999999998855432 22244


Q ss_pred             EEEecCcc
Q psy14542        306 IQYAHGKY  313 (371)
Q Consensus       306 l~v~~~p~  313 (371)
                      |.|...+.
T Consensus       245 l~v~~~~~  252 (257)
T 3gkz_A          245 LEIKRAPH  252 (257)
T ss_dssp             EEECCC--
T ss_pred             EEEEeCCC
Confidence            66655444

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.75  E-value=3.2e-17  Score=133.49  Aligned_cols=176  Identities=18%  Similarity=0.296  Sum_probs=110.9

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC-----EEEe------------------eCCeeEEEEccCC
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG-----LVLR------------------RNSDEVLVLDRVQ   67 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~-----~~~~------------------~~~~~~l~i~~~~   67 (371)
                      +.+...|.. +.+.+|++++|.|.+ .+.+.+.+.|+|++     ..+.                  .....+|.|.+++
T Consensus         2 ~~v~~~p~~-~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   79 (242)
T 2znx_A            2 IVLTQSPAT-LSVTPGNSVSLSCRA-SQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVE   79 (242)
T ss_dssp             CCEEEECSE-EEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC
T ss_pred             CcEEEcCCe-EEEcCCCcEEEEEEe-CCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCC
Confidence            346666777 899999999999965 45567889999842     1111                  0135689999999


Q ss_pred             cCCCeEEEEEEEcCCCCe-EEEEEEEEecce-------------eeEecCCceeeecCCcEEEEEEecCCCC-CceEEEe
Q psy14542         68 REDAGMYQCHVSADDDSA-QMSAQVILGGEL-------------VEIASSNQVVVDVGHRIELHCRVSPKRL-SSAKAWL  132 (371)
Q Consensus        68 ~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~-------------~~~~~~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~  132 (371)
                      .+|+|.|.|.+.+..+.. .....|.|...+             ..+...+...+.+|++++|.|.+.+.+. .+.+.|+
T Consensus        80 ~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~  159 (242)
T 2znx_A           80 TEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXI  159 (242)
T ss_dssp             GGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEE
T ss_pred             hHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeE
Confidence            999999999999865432 233566666322             1233333345689999999999987652 3789999


Q ss_pred             eCC--EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe-----ccceEEEEEeecCCccceeEEEeecc
Q psy14542        133 KDG--LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML-----SSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       133 ~~~--~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~-----~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      +++  ..+.    ..+.+....    ..+......+++.+.     ....|.|.+++.+| +|.|+|.+.+.
T Consensus       160 k~~~~~~~~----~l~~~~~~g----~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D-~G~Y~C~a~~~  222 (242)
T 2znx_A          160 RKFPGNRLE----YMGYVSYSG----STYYNPSLKSRISITRDTSKNQYYLDLNSVTTED-TATYYCANXDG  222 (242)
T ss_dssp             EECTTSCEE----EEEEECTTS----CEEECGGGTTCEEEEEETTTTEEEEEECSCCGGG-CEEEEEEETTS
T ss_pred             eeCCCCCcE----EEEEEecCC----ccccCccccCcEEEEecCCCCEEEEEECCCCcCc-CEEEEEeccCC
Confidence            853  2111    011110000    000000001223222     12479999999999 99999999874

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.75  E-value=9.9e-17  Score=131.06  Aligned_cols=171  Identities=19%  Similarity=0.352  Sum_probs=111.0

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCC-----CCeeEEEeCC--E--E-Eee------------------CCeeEEE
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRL-----SSAKAWLKDG--L--V-LRR------------------NSDEVLV   62 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-----~~~~~W~~~~--~--~-~~~------------------~~~~~l~   62 (371)
                      +.+...|.. +.+.+|++++|.|.+. +.+     .+.+.|+|++  .  . +..                  ....+|.
T Consensus         2 ~~v~~~p~~-~~v~~G~~v~L~C~~~-~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~   79 (247)
T 1svz_A            2 ILMTQTPLY-LPVSLGDQASISCRSS-QTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLK   79 (247)
T ss_dssp             CCEEEECSE-EEECTTCCEEEEEEES-SCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEE
T ss_pred             CcEEecCCe-EEecCCCCEEEEEeCC-CcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEE
Confidence            446666766 8999999999999654 444     5789999832  1  1 110                  1345899


Q ss_pred             EccCCcCCCeEEEEEEEcCCCCe-EEEEEEEEecce-------------eeEecCCceeeecCCcEEEEEEecCCCC-Cc
Q psy14542         63 LDRVQREDAGMYQCHVSADDDSA-QMSAQVILGGEL-------------VEIASSNQVVVDVGHRIELHCRVSPKRL-SS  127 (371)
Q Consensus        63 i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~-------------~~~~~~~~~~~~~g~~v~l~C~~~~~~~-~~  127 (371)
                      |.+++.+|+|.|.|.+.+..+.. .....|.|...+             ..+...+...+.+|++++|.|.+.+.+. .+
T Consensus        80 I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~  159 (247)
T 1svz_A           80 ISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDY  159 (247)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGS
T ss_pred             ECCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCc
Confidence            99999999999999998865432 223566666321             1333444455689999999999988752 37


Q ss_pred             eEEEeeCC--EEeeeCCeeEEEEcccC------cCCCeeEEEEEeCCceeEec-----cceEEEEEeecCCccceeEEEe
Q psy14542        128 AKAWLKDG--LVLRRNSDEVLVLDRVQ------REDAGMYQCHIEDGKYHMLS-----SGELIIHQVDESDRYRSYQCRG  194 (371)
Q Consensus       128 ~v~W~~~~--~~~~~~~~~~~~~~~~~------~~~~g~y~~~~~~~~~~~~~-----~~~l~i~~~~~~d~~g~y~C~~  194 (371)
                      .+.|++++  ..+.    ....+....      ....+         ++.+..     ...|.|.+++.+| +|.|.|.+
T Consensus       160 ~v~W~k~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~L~I~~v~~~D-sG~Y~C~a  225 (247)
T 1svz_A          160 SMHWVKQAPGGDLK----YVGWINTETDEPTFADDFKG---------RFAFSLDTSTSTAFLQINNLKNED-TATYFCVR  225 (247)
T ss_dssp             CEEEEEECTTCCEE----EEEEECTTTCCEEECGGGSS---------SEEEEEEGGGTEEEEEECSCCGGG-CEEEEEEE
T ss_pred             EEEEEEeCCCCCcE----EEEEEEcCCCccccCccccC---------cEEEEEecCCCEEEEEECCCChhH-CEEEEEEE
Confidence            89999963  1110    111111000      00112         222221     2589999999999 99999999


Q ss_pred             ecc
Q psy14542        195 VNK  197 (371)
Q Consensus       195 ~~~  197 (371)
                      .+.
T Consensus       226 ~n~  228 (247)
T 1svz_A          226 DRH  228 (247)
T ss_dssp             EEG
T ss_pred             ecc
Confidence            985

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.75  E-value=1.1e-16  Score=131.54  Aligned_cols=178  Identities=13%  Similarity=0.222  Sum_probs=111.4

Q ss_pred             ceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEc------ccCcCCCeeEEEEEeCCceeEec-----
Q psy14542        105 QVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLD------RVQREDAGMYQCHIEDGKYHMLS-----  172 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~------~~~~~~~g~y~~~~~~~~~~~~~-----  172 (371)
                      ...+.+|++++|.|.+.+.. +.+.+.|++....  ......+...      .......         +++.+..     
T Consensus        15 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~---------~R~~~~~~~~~~   83 (256)
T 3juy_B           15 AEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPG--QRFEWMGWINPYNGNKEFSAKFQ---------DRVTFTADTSAN   83 (256)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTT--SCCEEEEEEETTTTEEEECTTTT---------TTEEEEEETTTT
T ss_pred             CceecCCCeEEEEEEeecccccCceEEEEEECCC--CCcEEEEEEEcCCCcEeecccCc---------ceEEEEEecCCC
Confidence            34458999999999998742 2378999974210  0001111111      0011111         2333331     


Q ss_pred             cceEEEEEeecCCccceeEEEeecc-----------ccceeeeeeccceeeeecchhc----------cccceeeeeeee
Q psy14542        173 SGELIIHQVDESDRYRSYQCRGVNK-----------LTGASLLSVNRGRLSLTENKRL----------LSAAKMFEKHRI  231 (371)
Q Consensus       173 ~~~l~i~~~~~~d~~g~y~C~~~~~-----------~~~~~~~~~~~~~l~v~~~~~~----------~~p~~~~~~~~~  231 (371)
                      ...|.|.+++.+| +|.|.|.+.+.           .........   .|.|......          .++.+...+...
T Consensus        84 ~~~L~I~~v~~~D-sG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~---~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (256)
T 3juy_B           84 TAYMELRSLRSAD-TAVYYCARVGEWGWDDSPYDNYYMDVWGKGT---TVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTL  159 (256)
T ss_dssp             EEEEEECSCCGGG-CEEEEEEECCCCCTTCCTTTTCSCCEECCCE---EEEECSCC----------CCCCCCEEEECSEE
T ss_pred             EEEEEECCCCccc-CEEEEEeEEeccccccccccccceeEECCce---EEeecCCcccccccccCCCcceeEEEecCCeE
Confidence            2469999999999 99999999875           112222223   5666642211          134555556666


Q ss_pred             eeeecCCeEEEEEEeecCCC-CceEEEeC--Ccccc------------cCCceEE--e--cceEEEeccCCCCCeEEEEE
Q psy14542        232 LNVKKDESVILPCSAQGNPL-PTIKWYKQ--DSPVE------------ESDRIQR--I--GSSLSISHVEESDSGVWNCV  292 (371)
Q Consensus       232 ~~~~~g~~~~l~C~~~~~p~-~~v~W~~~--~~~~~------------~~~~~~~--~--~~~l~i~~~~~~d~G~Y~C~  292 (371)
                      . +.+|++++|.|.+.+.+. +.+.|++.  +..+.            ...++..  .  ..+|.|.++..+|+|.|.|.
T Consensus       160 ~-v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~  238 (256)
T 3juy_B          160 S-LSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQ  238 (256)
T ss_dssp             E-ECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             E-EeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEE
Confidence            6 899999999999998776 89999983  33222            1233332  1  23599999999999999999


Q ss_pred             EEcCCC
Q psy14542        293 ANNSEG  298 (371)
Q Consensus       293 a~n~~g  298 (371)
                      |.|..+
T Consensus       239 ~~~~~~  244 (256)
T 3juy_B          239 VYGASS  244 (256)
T ss_dssp             ECCSSC
T ss_pred             EeeCCC
Confidence            998654

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.75  E-value=1.6e-17  Score=135.67  Aligned_cols=173  Identities=13%  Similarity=0.202  Sum_probs=111.7

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe----------------CCEEEee-------------CCeeEEE
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK----------------DGLVLRR-------------NSDEVLV   62 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~----------------~~~~~~~-------------~~~~~l~   62 (371)
                      .+...|.. +.+.+|++++|.|.+. +.+.+.+.|+|                ++.....             ....+|.
T Consensus         3 ~v~~~p~~-~~v~~G~~v~L~C~~~-~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~   80 (246)
T 4dzb_B            3 VVSQHPSW-VISKSGTSVKIECRSL-DFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT   80 (246)
T ss_dssp             CEEEECSE-EEEETTSCEEEEEEES-SSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEE
T ss_pred             ccEECCcE-EEEeCCCcEEEEeEec-CCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEE
Confidence            45666666 8899999999999654 55788899999                3222211             1355899


Q ss_pred             EccCCcCCCeEEEEEEEcCCC----CeEEEEEEEEec-----ceeeEec-CCc-eeeecCCcEEEEEEecCCCCC-ceEE
Q psy14542         63 LDRVQREDAGMYQCHVSADDD----SAQMSAQVILGG-----ELVEIAS-SNQ-VVVDVGHRIELHCRVSPKRLS-SAKA  130 (371)
Q Consensus        63 i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~l~v~~-----~~~~~~~-~~~-~~~~~g~~v~l~C~~~~~~~~-~~v~  130 (371)
                      |.+++.+|+|.|.|.+.+..+    .......|.|..     .+|.+.. .+. ..+.+|+.++|.|.+.+.+++ ..+.
T Consensus        81 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~  160 (246)
T 4dzb_B           81 VTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELS  160 (246)
T ss_dssp             ECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred             ECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEE
Confidence            999999999999999986532    112334566652     2333322 222 123569999999999886552 3899


Q ss_pred             EeeCCEEeeeCCeeEE-EEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        131 WLKDGLVLRRNSDEVL-VLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       131 W~~~~~~~~~~~~~~~-~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      |+++|..+........ ........+.|.|.         +.  +.|.|.....+|..|.|+|.+.+.
T Consensus       161 W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~---------~~--s~l~i~~~~~~d~~g~YtC~v~~~  217 (246)
T 4dzb_B          161 WWVNGKEVHSGVCTDPQPLKEQPALNDSRYA---------LS--SRLRVSATFWQNPRNHFRCQVQFY  217 (246)
T ss_dssp             EEETTEEECTTEEECSSCEESSTTSTTCCEE---------EE--EEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred             EEECCEECCCCcccccccccccccCCCCCEE---------EE--EEEEECHHHhccCCCeEEEEEEec
Confidence            9999988865421100 00011111233332         21  457788776665479999999987

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.75  E-value=6.6e-17  Score=129.56  Aligned_cols=185  Identities=14%  Similarity=0.167  Sum_probs=113.5

Q ss_pred             CceeeecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEE
Q psy14542        104 NQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELI  177 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~  177 (371)
                      +...+.+|++++|.|.+.+.+. ...+.|+|.....  .....+......  ....+ .....+++.+..     +..|.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~--~~~~l~~~~~~~--~~~~~-~~~~~~R~~~~~~~~~~~~~L~   82 (220)
T 2fbj_H            8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGK--GLEWIGEIHPDS--GTINY-TPSLKDKFIISRDNAKNSLYLQ   82 (220)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTS--CEEEEEEECTTS--SCEEE-CTTTTTTEEEEECSSSCEEEEE
T ss_pred             CCeEecCCCcEEEEEEecCccCCCceEEEEEECCCC--CeEEEEEEccCC--Cceec-CCccCCcEEEEeeCCCCEEEEE
Confidence            3445589999999999987641 3789999853100  000111111000  00000 000012333332     25799


Q ss_pred             EEEeecCCccceeEEEeeccccce---eeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CC--
Q psy14542        178 IHQVDESDRYRSYQCRGVNKLTGA---SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PL--  251 (371)
Q Consensus       178 i~~~~~~d~~g~y~C~~~~~~~~~---~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--  251 (371)
                      |.+++.+| +|.|.|.+.+. .+.   .....   .|.|..... .+|.+...+ ... +..|+.++|.|.+.+. |.  
T Consensus        83 I~~v~~~D-sG~Y~C~~~~~-~~~~~~~~~~~---~L~V~~~~~-~~P~v~~~~-~~~-~~~g~~v~L~C~~~g~~P~~~  154 (220)
T 2fbj_H           83 MSKVRSED-TALYYCARLHY-YGYNAYWGQGT---LVTVSAESA-RNPTIYPLT-LPP-ALSSDPVIIGCLIHDYFPSGT  154 (220)
T ss_dssp             ECSCCGGG-CEEEEEEEEET-TTEEEEECCCE---EEEECSSCC-BCCEEEEEC-CCS-SSCCSSEEEEEEEEEEBSCCC
T ss_pred             ECCCChhh-CEEEEEEEecc-ccccceecCCE---EEEecCCCC-CCCEEEEee-ccc-ccCCCcEEEEEEEEeEECCCc
Confidence            99999999 99999999886 332   11222   666663211 345554443 333 6789999999999886 76  


Q ss_pred             CceEEEeCCccccc--CCce------EEecceEEEeccCCCCCeEEEEEEEcCCCCce
Q psy14542        252 PTIKWYKQDSPVEE--SDRI------QRIGSSLSISHVEESDSGVWNCVANNSEGQDK  301 (371)
Q Consensus       252 ~~v~W~~~~~~~~~--~~~~------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  301 (371)
                      +.+.|++++..+..  ....      ....+.|.|.....+|.|.|+|.|.|..|...
T Consensus       155 ~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          155 MNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             EEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             EEEEEecCCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            68999999876521  1111      11123588988888999999999999988754

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.75  E-value=8.7e-17  Score=132.06  Aligned_cols=178  Identities=19%  Similarity=0.244  Sum_probs=112.2

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC-----EEEe---------------------eCCeeEEEEc
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG-----LVLR---------------------RNSDEVLVLD   64 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~-----~~~~---------------------~~~~~~l~i~   64 (371)
                      ..|...|.. +.+.+|++++|.|.+. +.+.+.+.|+|..     ..+.                     .....+|.|.
T Consensus         4 ~~v~q~p~~-~~v~~G~~v~L~C~~~-~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~   81 (256)
T 3tf7_C            4 QSVTQPDAR-VTVSEGASLQLRCKYS-YSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKA   81 (256)
T ss_dssp             CEEECSCSE-EEEETTSCEEECCEEE-CSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEES
T ss_pred             cEEEecCce-EEecCCCeEEEEEEeC-CCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEEC
Confidence            345555666 8999999999999654 4478899999821     1111                     0145689999


Q ss_pred             cCCcCCCeEEEEEEEcCCCCe----EEEEEEEEec-------------------ceeeEecCCceee-ecCCcEEEEEEe
Q psy14542         65 RVQREDAGMYQCHVSADDDSA----QMSAQVILGG-------------------ELVEIASSNQVVV-DVGHRIELHCRV  120 (371)
Q Consensus        65 ~~~~~d~G~Y~C~~~~~~~~~----~~~~~l~v~~-------------------~~~~~~~~~~~~~-~~g~~v~l~C~~  120 (371)
                      +++.+|+|.|.|.+.+..+..    .....|.|..                   .++.+...+.... .+|++++|.|.+
T Consensus        82 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~  161 (256)
T 3tf7_C           82 SVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQ  161 (256)
T ss_dssp             SCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEE
T ss_pred             CCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEc
Confidence            999999999999999865422    1235666663                   2344555554443 799999999999


Q ss_pred             cCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe----ccceEEEEEeecCCccceeEEEeec
Q psy14542        121 SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML----SSGELIIHQVDESDRYRSYQCRGVN  196 (371)
Q Consensus       121 ~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~----~~~~l~i~~~~~~d~~g~y~C~~~~  196 (371)
                      .+. . +.+.|++.......  ..........     ........+++...    ....|.|.+++.+| +|.|+|.+.+
T Consensus       162 ~~~-~-~~v~W~k~~~~~~~--~~~~~~~~~~-----~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D-sG~Y~C~a~n  231 (256)
T 3tf7_C          162 TNS-H-NYMYWYRQDTGHEL--RLIYYSYGAG-----NLQIGDVPDGYKATRTTQEDFFLTLESASPSQ-TSLYFCASSD  231 (256)
T ss_dssp             CSC-C-SEEEEEEECTTSCE--EEEEEEESTT-----CCEECSCCTTCEEECCSSSBCEEEESSCCGGG-CEEEEEEEEE
T ss_pred             CCC-c-eEEEEEEECCCCCe--EEEEEEcCCC-----ceecCccCCceEEEeCCCCeEEEEECCCCHHH-CEEEEEEecC
Confidence            876 3 69999984211000  0011110000     00000001222222    23579999999999 9999999988


Q ss_pred             cccce
Q psy14542        197 KLTGA  201 (371)
Q Consensus       197 ~~~~~  201 (371)
                      . .|.
T Consensus       232 ~-~g~  235 (256)
T 3tf7_C          232 A-PGQ  235 (256)
T ss_dssp             E-TTE
T ss_pred             C-CCc
Confidence            7 443

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.74  E-value=6.1e-18  Score=118.32  Aligned_cols=92  Identities=20%  Similarity=0.309  Sum_probs=80.0

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE--e--cceEEEeccCCCCCeEEEEEEEc
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR--I--GSSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~--~--~~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      .+|.|...+.... +.+|+.+.|.|.+.|.|.|.+.|+++|..+..+.++..  .  ..+|.|.++..+|+|.|+|.|.|
T Consensus        12 ~pP~f~~~p~~~~-v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   90 (107)
T 3knb_B           12 SPPCFLRFPRPVR-VVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN   90 (107)
T ss_dssp             EEEEEEECCCCEE-EETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeCCCcEE-EeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEE
Confidence            5677777777777 99999999999999999999999999999988877663  2  23799999999999999999999


Q ss_pred             CCCCceeEEEEEEecCc
Q psy14542        296 SEGQDKMQLFIQYAHGK  312 (371)
Q Consensus       296 ~~g~~~~~~~l~v~~~p  312 (371)
                      ..|....++.|.|.++|
T Consensus        91 ~~G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           91 AAGEAYAAAAVTVLEPP  107 (107)
T ss_dssp             TTEEEEEEEEEEEEC--
T ss_pred             CCCEEEEEEEEEEEcCC
Confidence            99999999999998876

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.74  E-value=6.3e-17  Score=125.07  Aligned_cols=143  Identities=15%  Similarity=0.162  Sum_probs=99.6

Q ss_pred             cEEEeccCcEEEEEEecCCCCCCeeEEEeC-CEEEe------------e---------CCeeEEEEccCCcCCCeEEEEE
Q psy14542         20 QVVVDVGHRIELHCRVSPKRLSSAKAWLKD-GLVLR------------R---------NSDEVLVLDRVQREDAGMYQCH   77 (371)
Q Consensus        20 ~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~-~~~~~------------~---------~~~~~l~i~~~~~~d~G~Y~C~   77 (371)
                      ++.+.+|++++|.|......+.+.+.|+|+ +..+.            .         ..+++|.|.+++.+|+|.|+|.
T Consensus         8 ~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C~   87 (180)
T 2dru_A            8 NVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMR   87 (180)
T ss_dssp             EEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEEE
T ss_pred             eEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEEE
Confidence            378999999999996543344678999994 32221            0         1456799999999999999999


Q ss_pred             EEcCCCCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCe
Q psy14542         78 VSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAG  157 (371)
Q Consensus        78 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g  157 (371)
                      +.+.. .....+.|.|...++    .|... ..++.++|.|.+...+. +.+.|++++..+....               
T Consensus        88 v~~~~-~~~~~~~L~V~~~~~----~P~i~-~~~~~v~L~C~~~~gp~-p~i~W~~~~~~l~~~~---------------  145 (180)
T 2dru_A           88 MLHET-EDQWKITMEVYEMVS----KPMIY-WECSNATLTCEVLEGTD-VELKLYQGKEHLRSLR---------------  145 (180)
T ss_dssp             EESSS-EEEEEEEEEEECCCC----CCEEE-EEGGGTEEEEECSSCTT-CEEEEEETTEEEEEES---------------
T ss_pred             EEcCC-eEEEEEEEEEECCCC----CCEEE-ecCCCEEEEEEeCCCCC-CEEEEEECCeECcCCC---------------
Confidence            98765 556778888873211    11111 34567999999944465 8999999998765210               


Q ss_pred             eEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceee
Q psy14542        158 MYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASL  203 (371)
Q Consensus       158 ~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~  203 (371)
                                     +..|.+..  .+| .|.|+|.|.|. .+...
T Consensus       146 ---------------~~~l~~~~--~~d-~g~Y~C~a~N~-~~~~~  172 (180)
T 2dru_A          146 ---------------QKTMSYQW--TNL-RAPFKCKAVNR-VSQES  172 (180)
T ss_dssp             ---------------SSEEEEEC--SCC-SSCEEEEEEET-TEEEE
T ss_pred             ---------------CCEEEEEE--hhc-CccEEEEEecC-cCccc
Confidence                           13444422  677 99999999998 55443

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.74  E-value=1.9e-17  Score=137.02  Aligned_cols=174  Identities=17%  Similarity=0.244  Sum_probs=110.0

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--C------------------------EEEee--CCeeEE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--G------------------------LVLRR--NSDEVL   61 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~------------------------~~~~~--~~~~~l   61 (371)
                      .+.+...|.. +.+.+|++++|.|.+.  .+...+.|+|.  +                        ..+..  ....+|
T Consensus        26 ~~~v~~~p~~-v~v~~G~~v~L~C~~~--~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL  102 (268)
T 3pl6_D           26 GAGVSQTPSN-KVTEKGKYVELRCDPI--SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTL  102 (268)
T ss_dssp             -SSCBCCCSE-EEEETTCCEEEEEBCB--TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEE
T ss_pred             CceeEeCCCE-EEecCCCCEEEEEEeC--CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEE
Confidence            3445555655 8899999999999654  46778999981  1                        11111  136789


Q ss_pred             EEccCCcCCCeEEEEEEEcCC--CCeEEEEEEEEec-----ceeeEec-CCc-eeeecCCcEEEEEEecCCCCCc-eEEE
Q psy14542         62 VLDRVQREDAGMYQCHVSADD--DSAQMSAQVILGG-----ELVEIAS-SNQ-VVVDVGHRIELHCRVSPKRLSS-AKAW  131 (371)
Q Consensus        62 ~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~~l~v~~-----~~~~~~~-~~~-~~~~~g~~v~l~C~~~~~~~~~-~v~W  131 (371)
                      .|.+++.+|+|.|.|.+.+..  ........|.|..     .+|.+.. .+. ..+..|+.++|.|.+.+.++++ .++|
T Consensus       103 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W  182 (268)
T 3pl6_D          103 KIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW  182 (268)
T ss_dssp             EECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             EECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEE
Confidence            999999999999999999742  2223344566653     1333322 222 2235699999999998865523 8999


Q ss_pred             eeCCEEeeeCCeeE-EEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        132 LKDGLVLRRNSDEV-LVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       132 ~~~~~~~~~~~~~~-~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      +++|..+....... ...........|.|.         +.  +.|.|.....+|+.|.|+|.+.+.
T Consensus       183 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~--s~l~i~~~~~~d~~g~YtC~v~~~  238 (268)
T 3pl6_D          183 WVNGKEVHSGVCTDPQPLKEQPALNDSRYS---------LS--SRLRVSATFWQNPRNHFRCQVQFY  238 (268)
T ss_dssp             EESSSEECTTEEECSSCEESSTTCTTCCEE---------EE--EEEEEEHHHHSCTTCEEEEEEEEC
T ss_pred             EECCEECCCCeEeccccccccccCCCCcEE---------EE--EEEEEcHHHhccCCCEEEEEEEcC
Confidence            99998876532110 001111222334332         21  457777766554389999999987

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.74  E-value=5.3e-17  Score=132.08  Aligned_cols=171  Identities=19%  Similarity=0.305  Sum_probs=108.6

Q ss_pred             eeeecCCcEEEEEEecCCC---CCceEEEeeCC--EEeeeCCeeEEEEcc--cCcCCCeeEEEEEeCCceeEec---cce
Q psy14542        106 VVVDVGHRIELHCRVSPKR---LSSAKAWLKDG--LVLRRNSDEVLVLDR--VQREDAGMYQCHIEDGKYHMLS---SGE  175 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~---~~~~v~W~~~~--~~~~~~~~~~~~~~~--~~~~~~g~y~~~~~~~~~~~~~---~~~  175 (371)
                      ..+.+|+.++|.|.+.+.+   ..+.+.|+++.  ..+.     .+....  ......+         ++.+..   ...
T Consensus        11 ~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~-----~~~~~~~~~~~~~~~---------r~~~~~~~~~~~   76 (240)
T 1moe_A           11 LAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPK-----LLIYRASNLESGIPV---------RFSGTGSRTDFT   76 (240)
T ss_dssp             EEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCE-----EEEETTTEECTTCCT---------TEEEEEETTEEE
T ss_pred             EEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCce-----EEEEEecccCcCCCc---------cEEEEecCCeEE
Confidence            3458999999999999887   23899999852  1110     000000  0001112         222221   247


Q ss_pred             EEEEEeecCCccceeEEEeeccccce-eeeeeccceeeeecchhccccc-eeeeeeeeeeeecCCeEEEEEEeecCCC--
Q psy14542        176 LIIHQVDESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKRLLSAA-KMFEKHRILNVKKDESVILPCSAQGNPL--  251 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~~~~p~-~~~~~~~~~~~~~g~~~~l~C~~~~~p~--  251 (371)
                      |.|.+++.+| +|.|+|.+.+. .+. .....   .|.|.......+|. +...+.... +..|+.++|.|.+.+.|.  
T Consensus        77 L~I~~v~~~D-~G~Y~C~~~n~-~~~~~~~~~---~l~V~~~~~~~~~~~~~~~~~~~~-v~~G~~v~L~C~~~g~p~~~  150 (240)
T 1moe_A           77 LIIDPVEADD-VATYYCQQTNE-DPYTFGGGT---KLEIKGGGSGGGGEVQLQQSGAEL-VEPGASVKLSCTASGFNIKD  150 (240)
T ss_dssp             EEESSCCGGG-CEEEEEEECSS-SSCCBCCCE---EEEECCCSCCCCCCCEEEECCCEE-ECTTCCEEEEEEEESSCGGG
T ss_pred             EEEcCCChhh-CEEEEEEEccC-CceeecCCE---EEEEecCCCCCCceEEEeCCCceE-EeCCCcEEEEEEEcCccCCC
Confidence            9999999999 99999999987 432 22233   66666332111222 333344444 899999999999998874  


Q ss_pred             CceEEEeCC--cccc-----------------cCCceEEe------cceEEEeccCCCCCeEEEEEEEcC
Q psy14542        252 PTIKWYKQD--SPVE-----------------ESDRIQRI------GSSLSISHVEESDSGVWNCVANNS  296 (371)
Q Consensus       252 ~~v~W~~~~--~~~~-----------------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~a~n~  296 (371)
                      +.+.|+++.  ..+.                 ...++...      ..+|.|.++..+|+|.|+|.|.+.
T Consensus       151 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  220 (240)
T 1moe_A          151 TYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFGY  220 (240)
T ss_dssp             SCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred             CEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEec
Confidence            589999962  2221                 12344422      147999999999999999999853

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.74  E-value=4.8e-17  Score=130.88  Aligned_cols=180  Identities=14%  Similarity=0.185  Sum_probs=110.9

Q ss_pred             CceeeecCCcEEEEEEecCCC-CCceEEEeeCC--EEeeeCCeeEEEEccc------CcCCCeeEEEEEeCCceeEec--
Q psy14542        104 NQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--LVLRRNSDEVLVLDRV------QREDAGMYQCHIEDGKYHMLS--  172 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~--~~~~~~~~~~~~~~~~------~~~~~g~y~~~~~~~~~~~~~--  172 (371)
                      +...+.+|++++|.|.+.+.+ ....+.|++..  ..+.    ..+.....      ....         .+++.+..  
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~----~~~~~~~~~~~~~~~~~~---------~~R~~~~~~~   74 (225)
T 1op3_H            8 GGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLE----WVASISTSSTYRDYADAV---------KGRFTVSRDD   74 (225)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEE----EEEEECGGGCCEEECTTT---------TTTEEEEEET
T ss_pred             CCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcE----EEEEEccCCCccccCccc---------CCceEEEecC
Confidence            344568999999999998765 12789999853  2111    11111100      0011         12333332  


Q ss_pred             ---cceEEEEEeecCCccceeEEEeeccccc-----eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEE
Q psy14542        173 ---SGELIIHQVDESDRYRSYQCRGVNKLTG-----ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPC  244 (371)
Q Consensus       173 ---~~~l~i~~~~~~d~~g~y~C~~~~~~~~-----~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C  244 (371)
                         +..|.|.+++.+| +|.|.|.+.+. .+     ..........|.|..... .+|.+........ +..|+.++|.|
T Consensus        75 ~~~~~sL~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~~~~~~~~~L~V~~~~~-~~P~v~~~~~~~~-~~~g~~v~L~C  150 (225)
T 1op3_H           75 LEDFVYLQMHKMRVED-TAIYYCARKGS-DRLSDNDPFDAWGPGTVVTVSPAST-KGPSVFPLAPSSK-STSGGTAALGC  150 (225)
T ss_dssp             TTTEEEEEECSCCGGG-CEEEEEEEECC-SSCCSSCCEEEECCCEEEEEESCSC-BCCEEEEECCCTT-CCCCCEEEEEE
T ss_pred             CCCEEEEEECCCChhh-CEEEEEEEecC-CCccccccceeecCCEEEecccCCC-cCCeEEEeccccc-ccCCCcEEEEE
Confidence               3589999999999 99999999987 32     110100112666663211 2344433222223 56899999999


Q ss_pred             EeecC-CCC-ceEEEeCCcccccC--Cce------EEecceEEEeccCCCCCeEEEEEEEcCCCCce
Q psy14542        245 SAQGN-PLP-TIKWYKQDSPVEES--DRI------QRIGSSLSISHVEESDSGVWNCVANNSEGQDK  301 (371)
Q Consensus       245 ~~~~~-p~~-~v~W~~~~~~~~~~--~~~------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  301 (371)
                      .+.+. |.+ .+.|++++..+...  ...      ....+.|.|..+..+| |.|+|.|.|..+...
T Consensus       151 ~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~  216 (225)
T 1op3_H          151 LVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  216 (225)
T ss_dssp             EEEEEBSSCCEEECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred             EEEeEECCCeEEEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence            99885 766 89999998753211  111      1123468999998888 999999999776543

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.74  E-value=3.9e-18  Score=138.16  Aligned_cols=170  Identities=12%  Similarity=0.163  Sum_probs=109.5

Q ss_pred             cceEEEeCCCcEE-EeccCcEEEEEEecCCC--CCC-eeEEEeCCEEEeeC--------------CeeEEEEccCCcCCC
Q psy14542         10 SLSIEMSPSGQVV-VDVGHRIELHCRVSPKR--LSS-AKAWLKDGLVLRRN--------------SDEVLVLDRVQREDA   71 (371)
Q Consensus        10 ~~~~~~~p~~~~~-~~~G~~v~l~C~~~~~~--~~~-~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~   71 (371)
                      +|.+.+.|..... +.+|++++|.|.+....  |.+ .+.|+|++..+...              ....|.|.+++.+|+
T Consensus        15 ~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~   94 (239)
T 1i1c_A           15 VSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNG   94 (239)
T ss_dssp             --CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTT
T ss_pred             CCEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCC
Confidence            5667777776233 78999999999766432  655 89999988665421              234799999999999


Q ss_pred             eEEEEEEEcCCCCeEE--EEEE--EEecceeeEecCCcee-eecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeE
Q psy14542         72 GMYQCHVSADDDSAQM--SAQV--ILGGELVEIASSNQVV-VDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEV  145 (371)
Q Consensus        72 G~Y~C~~~~~~~~~~~--~~~l--~v~~~~~~~~~~~~~~-~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~  145 (371)
                      |.|+|.+.+..+....  .+.+  .+. .+|.+...+... ...|+.++|.|.+.+.++ +..++|+++|..+.....  
T Consensus        95 g~Y~C~~~~~~~~~~~~~~v~~~~~~~-~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~--  171 (239)
T 1i1c_A           95 KTFKCKVNSGAFPAPIEKSISKPEGTP-RGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKN--  171 (239)
T ss_dssp             CCEEEEEECSSSSSCEEEEECCCSSCC-BCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEE--
T ss_pred             CeEEEEEecccCCCCcEEEEecCCCCC-cCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCcee--
Confidence            9999999988775432  2222  222 344443322221 135789999999988543 368999999987743211  


Q ss_pred             EEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        146 LVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       146 ~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                         .......+|.|         .+.  +.|.|......| .|.|+|.+.|.
T Consensus       172 ---~~~~~~~dgt~---------~~~--s~l~v~~~~~~~-~g~YtC~v~n~  208 (239)
T 1i1c_A          172 ---TPPTMDTDGSY---------FLY--SKLNVKKETWQQ-GNTFTCSVLHE  208 (239)
T ss_dssp             ---CCCEECTTSCE---------EEE--EEEEEEHHHHHT-TCCEEEEEECT
T ss_pred             ---cCceECCCCCE---------EEE--EEEEEChhhcCC-CCEEEEEEECC
Confidence               01111222322         221  456666655567 89999999987

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.74  E-value=8.2e-17  Score=132.50  Aligned_cols=174  Identities=17%  Similarity=0.254  Sum_probs=102.7

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe---CCE--EEe--e-----------------------CCee
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK---DGL--VLR--R-----------------------NSDE   59 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~---~~~--~~~--~-----------------------~~~~   59 (371)
                      ++.|...|.. +.+.+|++++|.|.+ .+.+.+.+.|+|   ++.  .+.  .                       ....
T Consensus         2 s~~v~~~p~~-~~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   79 (259)
T 3omz_A            2 SSNLEGRTKS-VIRQTGSSAEITCDL-AEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNL   79 (259)
T ss_dssp             ---------C-EEEETTCCEEEECCC------CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCC
T ss_pred             ccccccCCce-eEecCCCcEEEEEEE-ccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeE
Confidence            3556677777 899999999999954 455677899998   211  110  0                       0345


Q ss_pred             EEEEccCCcCCCeEEEEEEEcCCCC---eEEEEEEEEecc----------------eeeEecCCc-eeeecCCcEEEEEE
Q psy14542         60 VLVLDRVQREDAGMYQCHVSADDDS---AQMSAQVILGGE----------------LVEIASSNQ-VVVDVGHRIELHCR  119 (371)
Q Consensus        60 ~l~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~~----------------~~~~~~~~~-~~~~~g~~v~l~C~  119 (371)
                      +|.|.+++.+|+|.|.|.+.+..+.   ......|.|...                .+.+...+. ..+.+|++++|.|.
T Consensus        80 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~  159 (259)
T 3omz_A           80 RMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCL  159 (259)
T ss_dssp             EEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCE
T ss_pred             EEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEE
Confidence            7999999999999999999986552   223456666632                234444444 44589999999999


Q ss_pred             ecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe-----ccceEEEEEeecCCccceeEEEe
Q psy14542        120 VSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML-----SSGELIIHQVDESDRYRSYQCRG  194 (371)
Q Consensus       120 ~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~-----~~~~l~i~~~~~~d~~g~y~C~~  194 (371)
                      +.+..+.+.+.|++.+...  ...........  ...+      ..+++.+.     ....|.|.+++.+| +|.|.|.+
T Consensus       160 ~~~~~~~~~v~W~k~~~~~--~~~~~~~~~~~--~~~~------~~~r~~~~~~~~~~~~~L~I~~v~~~D-sG~Y~C~~  228 (259)
T 3omz_A          160 YETSWWSYYIFWYKRLPSK--EMIFLIRQGSD--EQNA------KSGRYSVNFKKAAKSVALTISALQLED-SAKYFCAL  228 (259)
T ss_dssp             EECCCSSCEEEEEEECTTC--CEEEEEEEETT--SCCC------EETTEEECCBGGGTBCCEEESSCCGGG-CSEEEEEE
T ss_pred             CCCccCCceEEEeeeCCCC--CcEEEEEECCc--CCcc------cCCeEEEEEcCcCCEEEEEECCCChhH-CEEEEEEE
Confidence            8775333899999843100  00111111110  0000      01233332     12469999999999 99999999


Q ss_pred             ec
Q psy14542        195 VN  196 (371)
Q Consensus       195 ~~  196 (371)
                      ..
T Consensus       229 ~~  230 (259)
T 3omz_A          229 GE  230 (259)
T ss_dssp             ES
T ss_pred             eC
Confidence            74

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.74  E-value=1.7e-17  Score=131.74  Aligned_cols=167  Identities=13%  Similarity=0.167  Sum_probs=108.2

Q ss_pred             eecCCcEEEEEEecCCC---CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542        108 VDVGHRIELHCRVSPKR---LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES  184 (371)
Q Consensus       108 ~~~g~~v~l~C~~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~  184 (371)
                      +.+|++++|.|.+.+.+   ....+.|++++..+......   ..  .....|         ++.  ..+.|.|.+++.+
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~---~~--~~~~~~---------~~~--~~~~L~I~~~~~~   78 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTK---PR--EEQFNS---------TFR--SVSELPIMHQDWL   78 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEE---CC--CEETTT---------EEE--EEEEEECCHHHHH
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccC---CC--cCcCCC---------cEE--EEEEEEEehhHcC
Confidence            47899999999998774   33599999999765432100   00  000112         222  1257999999999


Q ss_pred             CccceeEEEeeccccceeeeeecccee--eeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CC-CceEEEeCC
Q psy14542        185 DRYRSYQCRGVNKLTGASLLSVNRGRL--SLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PL-PTIKWYKQD  260 (371)
Q Consensus       185 d~~g~y~C~~~~~~~~~~~~~~~~~~l--~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~  260 (371)
                      | +|.|+|.+.+. .+...... ...+  .+.     .+|.+...+.... ...|+.+.|.|.+.|. |+ +.+.|+++|
T Consensus        79 D-~G~Y~C~a~~~-~~~~~~~~-~v~~~~~~~-----~~P~v~~~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g  149 (207)
T 2vol_A           79 N-GKEFKCRVNSA-AFPAPIEK-TISKTKGRP-----KAPQVYTLPPPKE-QMAKDKVSLTCMITDFFPEDITVEWESNG  149 (207)
T ss_dssp             T-TCCEEEEEECT-TCSSCEEE-EECCCCCCC-----BCCEEEEECCCTG-GGSSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             C-CCEEEEEEEcc-CCCCceEE-EeccCCCCC-----cCCeEEEeCCCHH-HhcCCceEEEEEEeeEECCCCEEEEEECC
Confidence            9 99999999987 44321111 0022  223     5666655444333 3458999999999984 55 489999999


Q ss_pred             cccccCCc--eE-Eecc------eEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        261 SPVEESDR--IQ-RIGS------SLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       261 ~~~~~~~~--~~-~~~~------~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      ..+.....  .. ..++      .|.|.....+|.|.|+|.|.|....
T Consensus       150 ~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~  197 (207)
T 2vol_A          150 QPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  197 (207)
T ss_dssp             EECSCEEECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred             EeccCcccCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence            87754321  11 1122      3566666667899999999998754

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.74  E-value=2.6e-16  Score=127.13  Aligned_cols=194  Identities=13%  Similarity=0.140  Sum_probs=111.7

Q ss_pred             CceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEE
Q psy14542        104 NQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELI  177 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~  177 (371)
                      +...+.+|++++|.|.+.+.+ ....+.|++....  ......+......   ...+ .....+++.+..     +..|.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~--~~~~~l~~~~~~~---~~~~-~~~~~~R~~~~~~~~~~~~~L~   81 (232)
T 1dn0_B            8 GAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPG--KGLEWIGEINHSG---STNY-NPSLKSRVTISVDTSKNQFSLK   81 (232)
T ss_dssp             CCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTT--SCCEEEEEECTTC---CEEE-CTTTTTTEEEEEETTTTEEEEE
T ss_pred             CCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCC--CCeEEEEEEecCC---ceee-CCccCCeEEEEEeCCCCEEEEE
Confidence            344558999999999998754 2378999985310  0001111111100   0000 000012333331     24799


Q ss_pred             EEEeecCCccceeEEEeecccc-ce----eeeeeccceeeeecchhccccceeeeeeeeeeeecC-CeEEEEEEeecC-C
Q psy14542        178 IHQVDESDRYRSYQCRGVNKLT-GA----SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKD-ESVILPCSAQGN-P  250 (371)
Q Consensus       178 i~~~~~~d~~g~y~C~~~~~~~-~~----~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g-~~~~l~C~~~~~-p  250 (371)
                      |.+++.+| +|.|.|.+.+... +.    .....   .|.|..... .+|.+........ +..| +.++|.|.+.+. |
T Consensus        82 I~~v~~~D-~G~Y~C~~~~~~~~~~~~~~~~~~~---~L~V~~~~~-~~P~v~~~~p~~~-~~~g~~~v~L~C~~~g~~P  155 (232)
T 1dn0_B           82 LSSVTAAD-TAVYYCARPPHDTSGHYWNYWGQGT---LVTVSSGSA-SAPTLFPLVSCEN-SPSDTSSVAVGCLAQDFLP  155 (232)
T ss_dssp             ECSCCGGG-CEEEEEEECSSTTSCSCCSEECCCE---EEEECSSCC-BCCEEEEEECC-------CCSEEEEEEEEEEBS
T ss_pred             ECCCCccc-CEEEEEEEecCCcCCchhhhcccce---EEEEccCCC-CCCceEEeccccc-cCCCCCcEEEEEEEEEEeC
Confidence            99999999 9999999984201 11    11222   666663211 3344443222222 5578 999999999875 7


Q ss_pred             CC-ceEEEe-CCcccccC--------CceEEecceEEEeccCC--CCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542        251 LP-TIKWYK-QDSPVEES--------DRIQRIGSSLSISHVEE--SDSGVWNCVANNSEGQDKMQLFIQYA  309 (371)
Q Consensus       251 ~~-~v~W~~-~~~~~~~~--------~~~~~~~~~l~i~~~~~--~d~G~Y~C~a~n~~g~~~~~~~l~v~  309 (371)
                      .+ .+.|++ +|..+...        .......+.|.|.....  +|.|.|+|.|.|..+.......+.|.
T Consensus       156 ~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~  226 (232)
T 1dn0_B          156 DSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVI  226 (232)
T ss_dssp             SCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC-
T ss_pred             CCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCC
Confidence            76 899999 88766430        01112234688888876  78999999999999987666655544

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.74  E-value=1.9e-16  Score=128.82  Aligned_cols=173  Identities=18%  Similarity=0.209  Sum_probs=106.6

Q ss_pred             eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcc-cCcCCCeeEEEEEeCCceeEe---ccceEEEEEe
Q psy14542        106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDR-VQREDAGMYQCHIEDGKYHML---SSGELIIHQV  181 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~g~y~~~~~~~~~~~~---~~~~l~i~~~  181 (371)
                      ..+.+|++++|.|.+.+.+. +.+.|+++....  .....+.... ......+         ++.+.   ....|.|.++
T Consensus        11 ~~v~~G~~v~L~C~~~~~~~-~~v~W~k~~~~~--~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~L~I~~v   78 (242)
T 2znx_A           11 LSVTPGNSVSLSCRASQSIG-NNLHXYQQKSHE--SPRLLIKYASQSISGIPS---------RFSGSGSGTDFTLSINSV   78 (242)
T ss_dssp             EEECTTCCEEEEEEESSCCT-TCEEEEEECTTS--CCEEEEETTTEECTTSCT---------TEEEEEETTEEEEEESSC
T ss_pred             EEEcCCCcEEEEEEeCCCCC-ceEEEEEeCCCC--CceEEEEeccccCCCCCC---------CEEEecCCCEEEEEECCC
Confidence            34589999999999988776 899999853100  0000000000 0000112         33222   1247999999


Q ss_pred             ecCCccceeEEEeeccccce-eeeeeccceeeeecchh--------ccccceeeeeeeeeeeecCCeEEEEEEeecCC--
Q psy14542        182 DESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKR--------LLSAAKMFEKHRILNVKKDESVILPCSAQGNP--  250 (371)
Q Consensus       182 ~~~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~--------~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p--  250 (371)
                      +.+| +|.|.|.+.+. .+. .....   .|.|.....        ..++.....+.... +.+|++++|.|.+.+.+  
T Consensus        79 ~~~D-~G~Y~C~~~n~-~~~~~~~~~---~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~G~~v~L~C~~~g~~~~  152 (242)
T 2znx_A           79 ETED-FGMYFCQQSNS-XPYTFGGGT---KLEITGGGGSGGGGSGGGGSDIQLQESGPSL-VKPSQTLSLTCSVTGDSIT  152 (242)
T ss_dssp             CGGG-CEEEEEEECSS-SSCEECCCE---EEEEC---------------CCEEEEECCSE-ECTTSCEEEEEEEESSCGG
T ss_pred             ChHH-CEEEEEeEecC-CceEECCCE---EEEEcCCCCCCcccccccccceeeecCCcce-ecCCCeEEEEEEEEccccC
Confidence            9999 99999999987 332 11222   566663211        00111222333344 89999999999999876  


Q ss_pred             CCceEEEeCC--cccc----------------cCCceEEe------cceEEEeccCCCCCeEEEEEEEcC
Q psy14542        251 LPTIKWYKQD--SPVE----------------ESDRIQRI------GSSLSISHVEESDSGVWNCVANNS  296 (371)
Q Consensus       251 ~~~v~W~~~~--~~~~----------------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~a~n~  296 (371)
                      .+.+.|++++  ..+.                ...++...      ..+|.|.++..+|+|.|+|.|.|.
T Consensus       153 ~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          153 SDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             GSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             CcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence            4789999853  3221                12344422      137999999999999999999984

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.74  E-value=7.9e-18  Score=133.62  Aligned_cols=169  Identities=13%  Similarity=0.179  Sum_probs=102.9

Q ss_pred             ceEEEeCCCcEE-EeccCcEEEEEEecCCCC---CCeeEEEeCCEEEeeC--------CeeEEE------EccCCcCCCe
Q psy14542         11 LSIEMSPSGQVV-VDVGHRIELHCRVSPKRL---SSAKAWLKDGLVLRRN--------SDEVLV------LDRVQREDAG   72 (371)
Q Consensus        11 ~~~~~~p~~~~~-~~~G~~v~l~C~~~~~~~---~~~~~W~~~~~~~~~~--------~~~~l~------i~~~~~~d~G   72 (371)
                      |.+.+.|+.... +.+|+.++|.|.+....|   ...+.|+|++..+...        .++.|.      |.....+|+|
T Consensus         2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g   81 (207)
T 1l6x_A            2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGK   81 (207)
T ss_dssp             CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTC
T ss_pred             CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCc
Confidence            567777776223 379999999997664333   4589999999876432        122333      3333344599


Q ss_pred             EEEEEEEcCCCCeEEEEEE----EEecceeeEecCCce-eeecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeEE
Q psy14542         73 MYQCHVSADDDSAQMSAQV----ILGGELVEIASSNQV-VVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEVL  146 (371)
Q Consensus        73 ~Y~C~~~~~~~~~~~~~~l----~v~~~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~  146 (371)
                      .|+|.+.+..+.......+    .+. .+|.+...+.. ....|..++|.|.+.+.++ ++.++|+++|..+.....   
T Consensus        82 ~Y~C~a~n~~~~~~~~~~v~~~~~~~-~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~---  157 (207)
T 1l6x_A           82 EYKCKVSNKALPAPIEKTISKAKGQP-REPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKT---  157 (207)
T ss_dssp             CEEEEEECTTSSSCEEEEECCCCSCC-BCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEE---
T ss_pred             eEEEEEEcCcCCcceEEEeccCCCCC-cCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccc---
Confidence            9999999887654333233    222 33443322221 1134667999999988543 359999999987753211   


Q ss_pred             EEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        147 VLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       147 ~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                        ........|.|         .+.  +.|.|......| .|.|+|.+.|.
T Consensus       158 --~~~~~~~~gt~---------~~~--s~l~i~~~~~~~-~g~YtC~a~n~  194 (207)
T 1l6x_A          158 --TPPVLDSDGSF---------FLY--SKLTVDKSRWQQ-GNVFSCSVMHE  194 (207)
T ss_dssp             --CCCEECTTSCE---------EEE--EEEEEEHHHHHT-TCCEEEEEECT
T ss_pred             --cCceECCCCCE---------EEE--EEEEECHHHcCC-CCEEEEEEEcC
Confidence              01111222322         221  456666666677 99999999997

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.74  E-value=1.3e-17  Score=134.77  Aligned_cols=202  Identities=15%  Similarity=0.214  Sum_probs=107.8

Q ss_pred             eEEEEEEEcCCCCeEEEEEEEEecceeeEecCCc-ee-eecCCcEEEEEEecCCC---CCceEEEeeCCEEeeeCCeeEE
Q psy14542         72 GMYQCHVSADDDSAQMSAQVILGGELVEIASSNQ-VV-VDVGHRIELHCRVSPKR---LSSAKAWLKDGLVLRRNSDEVL  146 (371)
Q Consensus        72 G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~-~~~g~~v~l~C~~~~~~---~~~~v~W~~~~~~~~~~~~~~~  146 (371)
                      |.|.|.+.+..+.  ......+. .+......+. .. +..|+.++|.|.+.+..   .+..++|+++|..+......  
T Consensus         1 ~~~~~~~~~~~~~--c~~~~~~~-~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~--   75 (240)
T 4acp_A            1 GTKSCDKTHTCPP--CPAPELLG-GPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTK--   75 (240)
T ss_dssp             -------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEEC--
T ss_pred             CceeeeeeecCCC--CCccccCC-CCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceec--
Confidence            7899998876543  11111111 2222222222 22 34699999999999875   24689999999987543110  


Q ss_pred             EEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceee
Q psy14542        147 VLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF  226 (371)
Q Consensus       147 ~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~  226 (371)
                         .......|         .+...  +.|.|.....+| .|.|+|.+.+. .+......   .+.... ....+|.+..
T Consensus        76 ---~~~~~~~g---------~~~~~--s~L~i~~~~~~d-~~~YtC~v~h~-~~~~~~~~---~i~~~~-~~~~~P~V~v  135 (240)
T 4acp_A           76 ---PREEQYNS---------TYRVV--SVLTVLHQDWLN-GKEYKCKVSNK-ALPAPIEK---TISKAK-GQPREPQVYT  135 (240)
T ss_dssp             ---CCEEC------------CEEEE--EEEECCHHHHHH-TCCEEEEEECC-----CEEE---EECCCC-SCCBCCEEEE
T ss_pred             ---cceECCCC---------eEEEE--EEEEEechhccC-CCEEEEEEEcC-CCCccccc---cccccC-CCCCCCEEEE
Confidence               00011122         33322  567787777778 89999999987 44221221   221100 0115666666


Q ss_pred             eeeeeeeeecCCeEEEEEEeec-CCCC-ceEEEeCCcccccCCc--e-------EEecceEEEeccCCCCCeEEEEEEEc
Q psy14542        227 EKHRILNVKKDESVILPCSAQG-NPLP-TIKWYKQDSPVEESDR--I-------QRIGSSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       227 ~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~--~-------~~~~~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      .+.... ...|+.+.|.|.+.+ +|.+ .+.|+++|..+.....  .       ....+.|.|......|.|.|+|+|.+
T Consensus       136 ~~~~~~-~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h  214 (240)
T 4acp_A          136 LPPSRD-ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMH  214 (240)
T ss_dssp             ECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEEC
T ss_pred             ECCChH-HhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEE
Confidence            554433 345899999999998 5553 7999999987643211  1       11223567776666789999999998


Q ss_pred             CCCC
Q psy14542        296 SEGQ  299 (371)
Q Consensus       296 ~~g~  299 (371)
                      ..-.
T Consensus       215 ~~l~  218 (240)
T 4acp_A          215 EALH  218 (240)
T ss_dssp             TTSG
T ss_pred             CCCC
Confidence            7643

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.74  E-value=1.9e-16  Score=130.09  Aligned_cols=180  Identities=17%  Similarity=0.237  Sum_probs=106.5

Q ss_pred             CceeeecCCcEEEEEEecCC--CCCceEEEeeCCEEeeeCCeeEEEEcccC---cCCCeeEEEEEeCCceeEeccceEEE
Q psy14542        104 NQVVVDVGHRIELHCRVSPK--RLSSAKAWLKDGLVLRRNSDEVLVLDRVQ---REDAGMYQCHIEDGKYHMLSSGELII  178 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~g~y~~~~~~~~~~~~~~~~l~i  178 (371)
                      +...+.+|++++|.|.+.+.  +. +.+.|+|....    ....+.+....   ....+.|......      ....|.|
T Consensus        10 ~~~~v~~G~~v~L~C~~~~~~~~~-~~v~W~r~~~~----~~~~~~~~~~~~~~~~~~~r~~~~~~~------~~~~L~I   78 (256)
T 3ux9_B           10 PSVSGAPGQRVTISCSGSSSNIGS-NYVSWYQQLPG----TAPKLLIYDNNQRPSGVPDRFSGSKSG------TSASLAI   78 (256)
T ss_dssp             SEEEECTTCCEEEEEECCTTTTTT-SCCEEEEECTT----SCCEEEEBTTTBCCTTCCTTEEEEEET------TEEEEEE
T ss_pred             CcEEEcCCCcEEEEEecCCCCCCC-ceEEEEEECCC----CCCEEEEEecCCCCCCcCCcEEEEccC------CEEEEEE
Confidence            34455899999999999876  44 78999984310    00011111100   0111222211110      1247999


Q ss_pred             EEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccc---------------cceeeeeeeeeeeecCCeEEEE
Q psy14542        179 HQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLS---------------AAKMFEKHRILNVKKDESVILP  243 (371)
Q Consensus       179 ~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~---------------p~~~~~~~~~~~~~~g~~~~l~  243 (371)
                      .+++.+| +|.|.|.+.+. .+..........|.|.......+               +.....+.... +.+|++++|.
T Consensus        79 ~~v~~~D-sG~Y~C~~~~~-~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~G~~v~L~  155 (256)
T 3ux9_B           79 TGLQSED-EADYYCQVRDN-NENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGL-VQPGGSLRLS  155 (256)
T ss_dssp             CSCCGGG-CEEEEEEEEET-TTTEEEECCCEEEEEC----------------------CCEEEEECCEE-ECTTCCEEEE
T ss_pred             CCCChhh-CEEEEEEEEEC-CCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeE-EcCCCeEEEE
Confidence            9999999 99999999885 32111111122566663221000               11122233334 8899999999


Q ss_pred             EEeecCC--CCceEEEeCC--cccc-----------------cCCceEEe------cceEEEeccCCCCCeEEEEEEEcC
Q psy14542        244 CSAQGNP--LPTIKWYKQD--SPVE-----------------ESDRIQRI------GSSLSISHVEESDSGVWNCVANNS  296 (371)
Q Consensus       244 C~~~~~p--~~~v~W~~~~--~~~~-----------------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~a~n~  296 (371)
                      |.+.+.+  .+.+.|+++.  ..+.                 ...++...      ..+|.|.++..+|+|.|+|.|.|.
T Consensus       156 C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  235 (256)
T 3ux9_B          156 CAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYID  235 (256)
T ss_dssp             EEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcC
Confidence            9999876  6789999863  2220                 11233321      125999999999999999999996


Q ss_pred             C
Q psy14542        297 E  297 (371)
Q Consensus       297 ~  297 (371)
                      .
T Consensus       236 ~  236 (256)
T 3ux9_B          236 F  236 (256)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.73  E-value=3.6e-17  Score=133.09  Aligned_cols=170  Identities=13%  Similarity=0.186  Sum_probs=108.8

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe--------------CCEEEee-------------CCeeEEEE
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK--------------DGLVLRR-------------NSDEVLVL   63 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~--------------~~~~~~~-------------~~~~~l~i   63 (371)
                      +.+...|.. +.+.+|++++|.|.+. + +.+.+.|+|              ++.....             ....+|.|
T Consensus         3 ~~v~~~p~~-v~v~~G~~v~L~C~~~-~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I   79 (240)
T 3q5y_A            3 SGVVQSPRH-IIKEKGGRSVLTCIPI-S-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNM   79 (240)
T ss_dssp             CCCEEECSE-EEEETTCCEEEEEECC-T-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEE
T ss_pred             cccccCcce-eeecCCCcEEEEEEeC-C-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEE
Confidence            345566666 8899999999999654 3 667899998              2221111             14568999


Q ss_pred             ccCCcCCCeEEEEEEEcCCC---CeEEEEEEEEec-----ceeeEec-CCc-eeeecCCcEEEEEEecCC-CCCceEEEe
Q psy14542         64 DRVQREDAGMYQCHVSADDD---SAQMSAQVILGG-----ELVEIAS-SNQ-VVVDVGHRIELHCRVSPK-RLSSAKAWL  132 (371)
Q Consensus        64 ~~~~~~d~G~Y~C~~~~~~~---~~~~~~~l~v~~-----~~~~~~~-~~~-~~~~~g~~v~l~C~~~~~-~~~~~v~W~  132 (371)
                      .+++.+|+|.|.|.+.+..+   .......|.|..     .+|.+.. .+. ..+..|+.++|.|.+.+. |.+..+.|+
T Consensus        80 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~  159 (240)
T 3q5y_A           80 SALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWW  159 (240)
T ss_dssp             CSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             CcCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEE
Confidence            99999999999999973211   122334566552     2333332 222 123568999999999884 443489999


Q ss_pred             eCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        133 KDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      ++|..+.......   ........|         .+.+.  +.|.|.....+|+.|.|+|.+.+.
T Consensus       160 ~~g~~l~~~~~~~---~~~~~~~~g---------~~~~~--s~L~i~~~~~~d~~g~YtC~v~~~  210 (240)
T 3q5y_A          160 VNGKEVHSGVSTD---PQAYKESNY---------SYSLS--SRLRVSATFWHNPRNHFRCQVQFH  210 (240)
T ss_dssp             ETTEEECTTEEEC---SSCEEEETT---------EEEEE--EEEEEEHHHHSCTTCEEEEEEEEC
T ss_pred             ECCEECcCcEecC---CceeeCCCC---------CEEEE--EEEEECHHHhccCCCEEEEEEEcC
Confidence            9999876532110   000111122         22222  568899888887455999999987

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.73  E-value=8.1e-17  Score=131.40  Aligned_cols=173  Identities=16%  Similarity=0.197  Sum_probs=110.1

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe--------------CCEEEee--------------CCeeEEE
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK--------------DGLVLRR--------------NSDEVLV   62 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~--------------~~~~~~~--------------~~~~~l~   62 (371)
                      +.+...|.. +.+.+|++++|.| . .+.+...+.|+|              ++.....              ....+|.
T Consensus         3 ~~v~~~p~~-v~v~~G~~v~L~C-~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~   79 (245)
T 4ei6_B            3 PKVLQIPSH-QIIDMGQMVTLNC-D-PVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLK   79 (245)
T ss_dssp             CCCEEECSE-EEEETTCCEEEEE-E-CCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEE
T ss_pred             cceEeCCce-EEecCCCCEEEEE-E-cCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEE
Confidence            445666666 8899999999999 3 345678899998              2221111              0355899


Q ss_pred             EccCCcCCCeEEEEEEEcCC----CCeEEEEEEEEec-----ceeeEec-CCc-eeeecCCcEEEEEEecCCCC-CceEE
Q psy14542         63 LDRVQREDAGMYQCHVSADD----DSAQMSAQVILGG-----ELVEIAS-SNQ-VVVDVGHRIELHCRVSPKRL-SSAKA  130 (371)
Q Consensus        63 i~~~~~~d~G~Y~C~~~~~~----~~~~~~~~l~v~~-----~~~~~~~-~~~-~~~~~g~~v~l~C~~~~~~~-~~~v~  130 (371)
                      |.+++.+|+|.|.|.+.+..    ........|.|..     .+|.+.. .+. ..+.+|+.++|.|.+.+.++ +..+.
T Consensus        80 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~  159 (245)
T 4ei6_B           80 IQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELS  159 (245)
T ss_dssp             ECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred             ECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEE
Confidence            99999999999999998532    1122334566652     2333322 222 22356999999999988544 24899


Q ss_pred             EeeCCEEeeeCCeeEE-EEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        131 WLKDGLVLRRNSDEVL-VLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       131 W~~~~~~~~~~~~~~~-~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      |+++|..+........ ..........|.|.         ..  +.|.|.....+|+.|.|+|.+.+.
T Consensus       160 W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~---------~~--s~L~i~~~~~~d~~g~ytC~v~~~  216 (245)
T 4ei6_B          160 WWVNGKEVHSGVCTDPQPLKEQPALNDSRYA---------LS--SRLRVSATFWQNPRNHFRCQVQFY  216 (245)
T ss_dssp             EEETTEEECTTEEECSSCEESSTTSTTCCEE---------EE--EEEEEEHHHHSCTTCEEEEEEEEC
T ss_pred             EEECCEECCCCcccccccccccccCCCCCEE---------EE--EEEEEcHHHhccCCCeEEEEEEEC
Confidence            9999998865421100 00011111233332         21  567888777665478999999987

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.73  E-value=2.6e-16  Score=131.11  Aligned_cols=170  Identities=17%  Similarity=0.292  Sum_probs=108.0

Q ss_pred             EEeCCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeCC--E--E-Ee---------------eC----------CeeEEE
Q psy14542         14 EMSPSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--L--V-LR---------------RN----------SDEVLV   62 (371)
Q Consensus        14 ~~~p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~--~--~-~~---------------~~----------~~~~l~   62 (371)
                      ...|.. ..+.+|++++|.|.+.... +.+.+.|+|++  .  . +.               ..          ...+|.
T Consensus        30 ~~~p~~-~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~  108 (282)
T 1qok_A           30 LQQSGA-ELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQ  108 (282)
T ss_dssp             EEECCC-EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEE
T ss_pred             EECCCC-EEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEE
Confidence            445666 8999999999999754322 35789999943  1  1 10               00          246899


Q ss_pred             EccCCcCCCeEEEEEEEcCCC---Ce--EEEEEEEEecc--------------eeeEecCCc-eeeecCCcEEEEEEecC
Q psy14542         63 LDRVQREDAGMYQCHVSADDD---SA--QMSAQVILGGE--------------LVEIASSNQ-VVVDVGHRIELHCRVSP  122 (371)
Q Consensus        63 i~~~~~~d~G~Y~C~~~~~~~---~~--~~~~~l~v~~~--------------~~~~~~~~~-~~~~~g~~v~l~C~~~~  122 (371)
                      |.+++.+|+|.|.|.+.+..+   ..  ...+.|.|...              ++.+...+. ..+.+|++++|.|.+.+
T Consensus       109 I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~  188 (282)
T 1qok_A          109 LSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASS  188 (282)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESS
T ss_pred             ECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecC
Confidence            999999999999999998765   11  12346677632              123333333 34589999999999988


Q ss_pred             CCCCceEEEee--CCEEeeeCCeeEEEEcc-cCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        123 KRLSSAKAWLK--DGLVLRRNSDEVLVLDR-VQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       123 ~~~~~~v~W~~--~~~~~~~~~~~~~~~~~-~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      .+  +.+.|+|  ++..+..    ...... ......+.|.....      .....|+|.+++.+| +|.|+|.+.+.
T Consensus       189 ~~--~~v~W~k~~~g~~~~~----~~~~~~~~~~~~~~r~~~~~~------~~~~~L~I~~v~~~D-sG~Y~C~a~~~  253 (282)
T 1qok_A          189 SV--SYMHWFQQKPGTSPKL----WIYSTSNLASGVPARFSGSGS------GTSYSLTISRMEAED-AATYYCQQRSS  253 (282)
T ss_dssp             CC--SCCEEEEECTTSCCEE----EEETTTEECTTCCTTEEEEEE------TTEEEEEESSCCGGG-CEEEEEEECSS
T ss_pred             CC--ceEEEEEECCCCCcEE----EEEEecCCCCcccCCeEEecC------CCEEEEEEccCChhH-CEEEEEEEeeC
Confidence            77  5899999  4443211    000000 00001111211100      122579999999999 99999999875

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.72  E-value=2.2e-16  Score=126.10  Aligned_cols=185  Identities=15%  Similarity=0.226  Sum_probs=123.3

Q ss_pred             ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccce
Q psy14542         96 ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE  175 (371)
Q Consensus        96 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~  175 (371)
                      .+|.+.......+.+|+.+.|.|.+.+.|. +.+.|++++..+.......+.+..             .      .....
T Consensus        18 ~~P~~~~p~~~~~~~G~~v~l~C~~~g~p~-p~i~W~~~g~~l~~~~~~~~~~~~-------------~------~~~~~   77 (215)
T 3mtr_A           18 YAPKLQGPVAVYTWEGNQVNITCEVFAYPS-ATISWFRDGQLLPSSNYSNIKIYN-------------T------PSASY   77 (215)
T ss_dssp             EEEEEECCSEEEECTTCCEEEEEEEEEESC-CEEEEEETTEESSCSSSCSEEEEE-------------E------TTEEE
T ss_pred             cCCcccCCceEEEECCCCEEEEEEEeecCC-CEEEEEECCeECCCCCCccEEEec-------------C------CCeeE
Confidence            456665444444589999999999999888 899999999987655311111100             0      01368


Q ss_pred             EEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec----CCC
Q psy14542        176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG----NPL  251 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~----~p~  251 (371)
                      |.|.++...| .|.|+|.+.|. .|......   .+.|..     +|........   ...+..+.|.|....    .|.
T Consensus        78 L~i~~~~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~v~~-----~P~~p~~~~~---~~~~~~~~l~w~~p~~~~~~pi  144 (215)
T 3mtr_A           78 LEVTPDSEND-FGNYNCTAVNR-IGQESLEF---ILVQAD-----TPSSPSIDQV---EPYSSTAQVQFDEPEATGGVPI  144 (215)
T ss_dssp             EEECCCSGGG-CEEEEEEEECS-SCEEEEEE---EEEECC-----CCCCCEEEEE---EEETTEEEEEEECCSCCCSSCE
T ss_pred             EEEecCChhh-CeEEEEEEEEC-CCceEEEE---EEEECC-----CCCCCcceEE---EEecceEEEEEecCCccCCCce
Confidence            9999999999 99999999999 77766666   777763     3322211111   234677888887422    233


Q ss_pred             C--ceEEEeCCcccccCCceE----EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542        252 P--TIKWYKQDSPVEESDRIQ----RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       252 ~--~v~W~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      .  .+.|.+++...-......    .....|.|.++...+.|.|+|.|.|..|....+..+.+.-+|.
T Consensus       145 ~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p~  212 (215)
T 3mtr_A          145 LKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPV  212 (215)
T ss_dssp             EEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC-
T ss_pred             EEEEEEEEECCCCcccccccccccccccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEeccc
Confidence            2  378888775422211111    1126799999999999999999999999876666666655443

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.72  E-value=2.6e-18  Score=139.18  Aligned_cols=176  Identities=12%  Similarity=0.178  Sum_probs=92.0

Q ss_pred             ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe---ccceEEEEEe
Q psy14542        105 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML---SSGELIIHQV  181 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~---~~~~l~i~~~  181 (371)
                      ...+.+|++++|.|.+.+.+. +.+.|++++...    .....+........+ +     .+++...   .+..|.|.++
T Consensus        32 ~~~v~~G~~v~L~C~~~~~~~-~~v~W~~~~~~~----~~~~~~~~~~~~~~~-~-----~~r~~~~~~~~~~~L~I~~v  100 (233)
T 3bqu_C           32 SLSMSIGEKVTIRCITSTDID-DDMNWYQQKPGE----PPRLLISDGNTLRPG-V-----PSRFSSSGYGTDFVFTIENM  100 (233)
T ss_dssp             BC-------CCEEEEEEEEES-SCEEEEEECTTS----CCEEEECTTSCBCTT-S-----CTTCCCCEEEEEEEEC----
T ss_pred             eEEEecCCCEEEEEecCCcCC-CeEEEEEECCCC----CcEEEEEcCCccCCC-C-----CccEEeeccCCEEEEEECCC
Confidence            334589999999999988765 689999853200    000111100000000 0     1122211   2247999999


Q ss_pred             ecCCccceeEEEeecccccee-eeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CCC-ceEEEe
Q psy14542        182 DESDRYRSYQCRGVNKLTGAS-LLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PLP-TIKWYK  258 (371)
Q Consensus       182 ~~~d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~  258 (371)
                      +.+| +|.|.|.+.+. .+.. ....   .+.|...  ..+|.+...+.... +..|+.++|.|.+.|. |.+ .+.|++
T Consensus       101 ~~~D-~G~Y~C~~~~~-~~~~~~~~~---~l~V~~~--~~~p~v~~~~~~~~-~~~g~~v~L~C~~~g~~p~~~~v~W~k  172 (233)
T 3bqu_C          101 LSED-VADYYCLQSDN-LPYTFGGGT---NLEIKRA--DAAPTVSIFPPSSE-QLTSGGASVVCFLNNFYPKDINVKWKI  172 (233)
T ss_dssp             -CCC-CSEEEEEECSS-SSCCBCCCC---BC---CC--CBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             CHHH-CEEEEEEEecC-CceeecCCE---EEEEeCC--CCCCEEEEeCCCHH-hhcCCceEEEEEEccccCCceEEEEEE
Confidence            9999 99999999886 3321 1122   4555421  13555555433333 4579999999999985 443 799999


Q ss_pred             CCcccccC-Cce----------EEecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        259 QDSPVEES-DRI----------QRIGSSLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       259 ~~~~~~~~-~~~----------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      +|..+..+ ...          ....+.|.|..+..+|+|.|+|.|.|....
T Consensus       173 ~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          173 DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             C-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             CCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            99876554 110          112246889999999999999999997654

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.72  E-value=3.4e-16  Score=129.02  Aligned_cols=181  Identities=18%  Similarity=0.345  Sum_probs=113.5

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCC------CCeeEEEeC--CE---EEe------------------eCCe
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRL------SSAKAWLKD--GL---VLR------------------RNSD   58 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~------~~~~~W~~~--~~---~~~------------------~~~~   58 (371)
                      ..++.+...|.. +.+.+|++++|.|.+. +.+      .+.+.|+|+  +.   .+.                  ....
T Consensus         3 ~~~~~v~q~p~~-v~v~~G~~v~L~C~~~-~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~   80 (264)
T 2gjj_A            3 EADIVLTQTPSS-LPVSVGEKVTMTCKSS-QTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTD   80 (264)
T ss_dssp             CCCCCEEEECSE-EEEETTCCEEEEEEES-SCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTE
T ss_pred             ccccceEecCCe-EEecCCCcEEEEeEcC-CcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCE
Confidence            345677777877 8999999999999654 444      567999984  21   111                  0134


Q ss_pred             eEEEEccCCcCCCeEEEEEEEcCCCCe-EEEEEEEEecce-------------------eeEecCCceeeecCCcEEEEE
Q psy14542         59 EVLVLDRVQREDAGMYQCHVSADDDSA-QMSAQVILGGEL-------------------VEIASSNQVVVDVGHRIELHC  118 (371)
Q Consensus        59 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~-------------------~~~~~~~~~~~~~g~~v~l~C  118 (371)
                      .+|.|.+++.+|+|.|.|.+.+..+.. .....|.|...+                   ..+...+...+.+|++++|.|
T Consensus        81 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C  160 (264)
T 2gjj_A           81 FTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISC  160 (264)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEE
T ss_pred             EEEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEE
Confidence            689999999999999999998765422 223466666321                   123333444568999999999


Q ss_pred             EecCCCC-CceEEEeeCCEEeeeCCeeEEEEcccC------cCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeE
Q psy14542        119 RVSPKRL-SSAKAWLKDGLVLRRNSDEVLVLDRVQ------REDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQ  191 (371)
Q Consensus       119 ~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~------~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~  191 (371)
                      .+.+.+. .+.+.|+++...  ......+.+....      ....+.+.......    .....|.|.+++.+| +|.|.
T Consensus       161 ~~~~~~~~~~~v~W~r~~~g--~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~~L~I~~v~~~D-sG~Y~  233 (264)
T 2gjj_A          161 KASGYSFTGYFINWVKKNSG--KSPEWIGHISSSYATSTYNQKFKNKAAFTVDTS----SSTAFMQLNSLTSED-SADYY  233 (264)
T ss_dssp             EEESSCGGGSEEEEEEECTT--SCCEEEEEEETTTCCEEECGGGTTTEEEEEETT----TTEEEEEECSCCGGG-CEEEE
T ss_pred             EEeCCccCCeEEEEEEECCC--CCcEEEEEEeccCcccccCcccCCceEEEEcCC----CCEEEEEECcCCccc-CEEEE
Confidence            9987753 368999986310  0001111110000      00011111111000    013579999999999 99999


Q ss_pred             EEeecc
Q psy14542        192 CRGVNK  197 (371)
Q Consensus       192 C~~~~~  197 (371)
                      |.+.+.
T Consensus       234 C~a~n~  239 (264)
T 2gjj_A          234 CVRSGN  239 (264)
T ss_dssp             EEEECS
T ss_pred             EEEecC
Confidence            999985

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.72  E-value=6e-18  Score=137.06  Aligned_cols=171  Identities=16%  Similarity=0.235  Sum_probs=95.7

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC--EE---Eee----------C--------CeeEEEEccC
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG--LV---LRR----------N--------SDEVLVLDRV   66 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~--~~---~~~----------~--------~~~~l~i~~~   66 (371)
                      ++.+...|.. +.+.+|++++|.|.+. +.+.+.+.|+|++  ..   +..          .        ...+|.|.++
T Consensus        23 ~~~v~~~p~~-~~v~~G~~v~L~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v  100 (233)
T 3bqu_C           23 ETTVTQSPAS-LSMSIGEKVTIRCITS-TDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENM  100 (233)
T ss_dssp             CCCEEEECSB-C-------CCEEEEEE-EEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC----
T ss_pred             ceeEEEcCCe-EEEecCCCEEEEEecC-CcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCC
Confidence            4566666776 8899999999999654 4455679999842  11   110          0        2337999999


Q ss_pred             CcCCCeEEEEEEEcCCCCe-EEEEEEEEec--ceeeEecCC-ceeeecCCcEEEEEEecCCCCC-ceEEEeeCCEEeeeC
Q psy14542         67 QREDAGMYQCHVSADDDSA-QMSAQVILGG--ELVEIASSN-QVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRN  141 (371)
Q Consensus        67 ~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~--~~~~~~~~~-~~~~~~g~~v~l~C~~~~~~~~-~~v~W~~~~~~~~~~  141 (371)
                      +.+|+|.|.|.+.+..+.. .....|.|..  .+|.+...+ ......|+.++|.|.+.+.+++ ..+.|+++|..+...
T Consensus       101 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~  180 (233)
T 3bqu_C          101 LSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNG  180 (233)
T ss_dssp             -CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CC
T ss_pred             CHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCC
Confidence            9999999999998765432 2223455542  245444322 2222469999999999885442 489999999876543


Q ss_pred             CeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        142 SDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       142 ~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      ..   ..........|.|         ..  .+.|.|.....+| .|.|+|.+.|.
T Consensus       181 ~~---~~~~~~~~~~~~~---------~~--~s~L~i~~~~~~d-~g~Y~C~a~n~  221 (233)
T 3bqu_C          181 VL---NSWTDQDSKDSTY---------SM--SSTLTLTKDEYER-HNSYTCEATHK  221 (233)
T ss_dssp             EE---EEECCCCTTTCCE---------EE--EEEEEEEHHHHHT-CCCEEEEEEEC
T ss_pred             ce---EecCCccCCCCCE---------EE--EEEEEECHHHhCC-CCCEEEEEEeC
Confidence            11   0111111222322         11  2578899999999 99999999987

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.72  E-value=4.7e-16  Score=124.77  Aligned_cols=185  Identities=15%  Similarity=0.195  Sum_probs=110.0

Q ss_pred             ceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ceEEE
Q psy14542        105 QVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GELII  178 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~l~i  178 (371)
                      ...+.+|++++|.|.+.+.+ ....+.|++....  ......+.+... .++...+......+++.+..+     ..|.|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   85 (221)
T 3m8o_H            9 GGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASG--KGLEWVGRIKRN-AESDATAYAASMRGRLTISRDDSKNTAFLQM   85 (221)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTT--SCEEEEEEECCG-GGTTCEEECGGGTTSEEEEEEGGGTEEEEEE
T ss_pred             CEEEcCCCCEEEEEEcccccccccEEEEEEECCC--CCcEEEEEEccc-ccCcccccCccccccEEEEecCCCCEEEEEE
Confidence            34568999999999998643 2378999984310  000111111110 000000000001234433322     36999


Q ss_pred             EEeecCCccceeEEEeecccc-ceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-CCC--Cce
Q psy14542        179 HQVDESDRYRSYQCRGVNKLT-GASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPL--PTI  254 (371)
Q Consensus       179 ~~~~~~d~~g~y~C~~~~~~~-~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~--~~v  254 (371)
                      .+++.+| +|.|.|.+.+... .......   .+.|.... ..+|.+.......  ...|+.++|.|.+.+ .|.  +.+
T Consensus        86 ~~v~~~D-sG~Y~C~~~~~~~~~~~~~~~---~l~V~~~~-~~~p~v~~~~~~~--~~~g~~v~L~C~~~~~~P~~~~~v  158 (221)
T 3m8o_H           86 NSLKSDD-TAMYYCVIRGDVYNRQWGQGT---LVTVSSAS-PTSPKVFPLSLCS--TQPDGNVVIACLVQGFFPQEPLSV  158 (221)
T ss_dssp             CSCCGGG-CEEEEEEEESCTTCCCBBCCE---EEEECSCC-CBCCEEEEEECCS--CCCTTEEEEEEEEEEEBSSCSEEE
T ss_pred             CCCCHHH-CEEEEEEEECCChhheECCCE---EEEEecCC-CCCCeEEEecCcc--cccCCCEEEEEEEEeeECCCCEEE
Confidence            9999999 9999999987611 1222222   55554211 1344443222111  267999999999998 665  489


Q ss_pred             EEEeCCcccc----------cCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        255 KWYKQDSPVE----------ESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       255 ~W~~~~~~~~----------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      .|+++|..+.          .++++. ..+.|.|.....+|+|.|+|.|.|..+..
T Consensus       159 ~W~~~g~~~~~~~~~~~~~~~~~~~~-~~s~L~i~~~~~~d~g~ytC~v~~~~~~~  213 (221)
T 3m8o_H          159 TWSESGQGVTARNFPPSQDASGDLYT-TSSQLTLPATQCLAGKSVTCHVKHYTNPS  213 (221)
T ss_dssp             EESCCSTTCEEEECCCEECSSSSCEE-EEEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred             EEEECCEECceEEcCceeeCCCCcEE-EEEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence            9999998762          222222 23469999999999999999999987654

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.72  E-value=2.3e-16  Score=126.65  Aligned_cols=161  Identities=15%  Similarity=0.222  Sum_probs=104.1

Q ss_pred             EEEeccCcEEEEEEecCCC-CCCeeEEEeCC--E---EEe-----------------eC----------CeeEEEEccCC
Q psy14542         21 VVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--L---VLR-----------------RN----------SDEVLVLDRVQ   67 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~--~---~~~-----------------~~----------~~~~l~i~~~~   67 (371)
                      +.+.+|++++|.|.+.... +.+.+.|+|++  .   .+.                 ..          ...+|.|.+++
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   89 (222)
T 1q9r_B           10 GLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLR   89 (222)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             eeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcCC
Confidence            6899999999999765321 25789999842  1   110                 00          24589999999


Q ss_pred             cCCCeEEEEEEEcCCC-----CeEEEEEEEEec---ceeeEec-CCceeeecCCcEEEEEEecCC-CCCceEEEeeCCEE
Q psy14542         68 REDAGMYQCHVSADDD-----SAQMSAQVILGG---ELVEIAS-SNQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLV  137 (371)
Q Consensus        68 ~~d~G~Y~C~~~~~~~-----~~~~~~~l~v~~---~~~~~~~-~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~  137 (371)
                      .+|+|.|.|.+.+..+     .......|.|..   .+|.+.. .+...+.+|+.++|.|.+.+. |.+..+.|++++..
T Consensus        90 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~  169 (222)
T 1q9r_B           90 AEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS  169 (222)
T ss_dssp             GGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             cccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEecCCeE
Confidence            9999999999998653     122335666653   2333332 222234689999999999886 65239999999875


Q ss_pred             eeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecccccee
Q psy14542        138 LRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS  202 (371)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~  202 (371)
                      +.... ....               ..++.+..  .+.|.|.++...|  |.|+|.+.|. .+..
T Consensus       170 ~~~~~-~~~~---------------~~~~~~~~--~s~L~i~~~~~~d--g~y~C~a~n~-~~~~  213 (222)
T 1q9r_B          170 SGVHT-FPAV---------------LQSDLYTL--SSSVTVPSSTWPS--ETVTCNVAHP-ASST  213 (222)
T ss_dssp             TTEEE-EEEE---------------EETTEEEE--EEEEEEETTTTTT--SCCEEEEEEG-GGTE
T ss_pred             cceEe-cccc---------------ccCCcEEE--EEEEEECchhcCC--CeEEEEEEcc-CCCC
Confidence            43210 0000               01222222  2578888777655  9999999998 5543

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.71  E-value=2.4e-16  Score=130.39  Aligned_cols=183  Identities=20%  Similarity=0.317  Sum_probs=109.8

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCC----CCeeEEEeCC--E---EEe------------------eCCeeE
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRL----SSAKAWLKDG--L---VLR------------------RNSDEV   60 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~----~~~~~W~~~~--~---~~~------------------~~~~~~   60 (371)
                      ...+.+...|.. +.+.+|++++|.|.+....+    .+.+.|+|++  .   .+.                  .....+
T Consensus        13 ~~~~~v~~~p~~-~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~   91 (268)
T 1x9q_A           13 ASDVVMTQTPLS-LPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFT   91 (268)
T ss_dssp             -CCCCEEEECSE-ECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEE
T ss_pred             cccceEEeeCCe-EEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEE
Confidence            456778887877 88999999999996544332    4789999842  1   111                  013468


Q ss_pred             EEEccCCcCCCeEEEEEEEcCCCCe-EEEEEEEEecce--------e---------------eEecCCceeeecCCcEEE
Q psy14542         61 LVLDRVQREDAGMYQCHVSADDDSA-QMSAQVILGGEL--------V---------------EIASSNQVVVDVGHRIEL  116 (371)
Q Consensus        61 l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~--------~---------------~~~~~~~~~~~~g~~v~l  116 (371)
                      |.|.+++.+|+|.|.|.+.+..+.. .....|.|...+        |               .+.......+.+|++++|
T Consensus        92 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L  171 (268)
T 1x9q_A           92 LKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKL  171 (268)
T ss_dssp             EEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEE
T ss_pred             EEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEE
Confidence            9999999999999999998764422 123445554211        1               122222345589999999


Q ss_pred             EEEecCCCC-CceEEEeeCC--EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEEEEEeecCCccc
Q psy14542        117 HCRVSPKRL-SSAKAWLKDG--LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELIIHQVDESDRYR  188 (371)
Q Consensus       117 ~C~~~~~~~-~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~i~~~~~~d~~g  188 (371)
                      .|.+.+.+. .+.+.|++..  ..+.    ....+....... ..+......+++.+..     ...|.|.+++.+| +|
T Consensus       172 ~C~~~~~~~~~~~v~W~k~~~~~~~~----~l~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D-sG  245 (268)
T 1x9q_A          172 SCVTSGFTFGHYWMNWVRQSPEKGLE----WVAQFRNKPYNY-ETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVED-TG  245 (268)
T ss_dssp             EEEEESSCGGGCEEEEEEEETTTEEE----EEEEECCGGGTT-CEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGG-CE
T ss_pred             EEEecCccccccEEEEEEeCCCCCcE----EEEEEccccccc-ccccCCccCCeEEEEEeCCCCEEEEEECCCCHHH-CE
Confidence            999987653 3789999842  2111    111111100000 0000000012333321     2579999999999 99


Q ss_pred             eeEEEeecc
Q psy14542        189 SYQCRGVNK  197 (371)
Q Consensus       189 ~y~C~~~~~  197 (371)
                      .|+|.+.+.
T Consensus       246 ~Y~C~a~~~  254 (268)
T 1x9q_A          246 IYYCTGASY  254 (268)
T ss_dssp             EEEEEEEET
T ss_pred             EEEEEEccC
Confidence            999999864

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.71  E-value=2.2e-16  Score=127.32  Aligned_cols=184  Identities=15%  Similarity=0.183  Sum_probs=111.5

Q ss_pred             ceeeecCCcEEEEEEecCCCC-C--ceEEEeeCC--EEeeeCCeeEEEEccc-----CcCCCeeEEEEEeCCceeEec--
Q psy14542        105 QVVVDVGHRIELHCRVSPKRL-S--SAKAWLKDG--LVLRRNSDEVLVLDRV-----QREDAGMYQCHIEDGKYHMLS--  172 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~-~--~~v~W~~~~--~~~~~~~~~~~~~~~~-----~~~~~g~y~~~~~~~~~~~~~--  172 (371)
                      ...+.+|++++|.|.+.+.+. .  ..+.|+|..  ..+    ...+.....     .....+         ++.+..  
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~----~~l~~~~~~~~~~~~~~~~~---------R~~~~~~~   75 (228)
T 3bae_H            9 PGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGL----EWLAHIYWDDDKRYNPSLES---------RLTISKDT   75 (228)
T ss_dssp             CSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCC----EEEEEECTTSCEEECTTTGG---------GEEEEEET
T ss_pred             ceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCe----EEEEEEecCCceeeCcccCC---------cEEEEEcC
Confidence            345589999999999987652 2  689999842  211    111111100     001112         333321  


Q ss_pred             ---cceEEEEEeecCCccceeEEEeeccccc------eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEE
Q psy14542        173 ---SGELIIHQVDESDRYRSYQCRGVNKLTG------ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILP  243 (371)
Q Consensus       173 ---~~~l~i~~~~~~d~~g~y~C~~~~~~~~------~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~  243 (371)
                         +..|.|.+++.+| +|.|.|.+.+. .+      ..........|.|.... ..+|.+........ +..|+.++|.
T Consensus        76 ~~~~~~L~I~~v~~~D-~G~Y~C~~~~~-~g~~~~~~~~~~~~~~~~L~V~~~~-~~~P~i~~~~~~~~-~~~g~~~~l~  151 (228)
T 3bae_H           76 SRDMVFMKITSVDTAD-TATYYCARRGF-YGRKYEVNHFDYWGQGTTLTVSSAK-TTAPSVYPLAPVCG-DTTGSSVTLG  151 (228)
T ss_dssp             TTTEEEEEECSCCGGG-CEEEEEEEEEE-STTCTTSEEEEEECCCEEEEECSCC-CBCCEEEEECC------CCSEEEEE
T ss_pred             CCCeEEEEEcCCCccc-CEEEEEEEecC-CCccccccceeeeCCcEEEEecCCC-CCCCEEEEeccccc-ccCCCCEEEE
Confidence               2589999999999 99999999886 43      11010011266666311 13455544332333 6789999999


Q ss_pred             EEeecC-CCC-ceEEEeCCcccccC--C-----ceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542        244 CSAQGN-PLP-TIKWYKQDSPVEES--D-----RIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI  306 (371)
Q Consensus       244 C~~~~~-p~~-~v~W~~~~~~~~~~--~-----~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  306 (371)
                      |.+.+. |.+ .+.|++++..+...  .     ......+.|.|..+..+| |.|+|.|.|..+.......+
T Consensus       152 C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~~~  222 (228)
T 3bae_H          152 CLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDKKI  222 (228)
T ss_dssp             EEEEEEBSSCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             EEEccEeCCCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEEEc
Confidence            999885 777 99999988754211  0     011123468898888866 99999999999876554433

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.71  E-value=1.3e-16  Score=132.09  Aligned_cols=180  Identities=16%  Similarity=0.223  Sum_probs=108.4

Q ss_pred             eeeecCCcEEEEEEecCCCCCceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec----cceEEEE
Q psy14542        106 VVVDVGHRIELHCRVSPKRLSSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS----SGELIIH  179 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~----~~~l~i~  179 (371)
                      ..+.+|++++|.|.+.. +. ..+.|+|.  +....    ......+......+.+    .++++.+..    +..|.|.
T Consensus        36 v~v~~G~~v~L~C~~~~-~~-~~v~W~r~~~~~~~~----~~~~~~~~~~~~~~~~----~~~R~~~~~~~~~~~sL~I~  105 (268)
T 3pl6_D           36 KVTEKGKYVELRCDPIS-GH-TALYWYRQSLGQGPE----FLIYFQGTGAADDSGL----PNDRFFAVRPEGSVSTLKIQ  105 (268)
T ss_dssp             EEEETTCCEEEEEBCBT-TC-CEEEEEEECTTSCCE----EEEEEETTEEEECTTC----CSTTEEEECTTSSSEEEEEC
T ss_pred             EEecCCCCEEEEEEeCC-CC-ceEEEEEECCCCCcE----EEEEECCCCccccCCC----ccCcEEEEecCCCEEEEEEC
Confidence            34589999999999873 44 79999983  21111    0111100000000000    013444332    4679999


Q ss_pred             EeecCCccceeEEEeeccc-cceeeeeeccceeeeecch-hccccceeee-eeeeeeeecCCeEEEEEEeecCCC-C-ce
Q psy14542        180 QVDESDRYRSYQCRGVNKL-TGASLLSVNRGRLSLTENK-RLLSAAKMFE-KHRILNVKKDESVILPCSAQGNPL-P-TI  254 (371)
Q Consensus       180 ~~~~~d~~g~y~C~~~~~~-~~~~~~~~~~~~l~v~~~~-~~~~p~~~~~-~~~~~~~~~g~~~~l~C~~~~~p~-~-~v  254 (371)
                      +++.+| +|.|.|.+.+.. ........   .+.|.... ...+|.+... +.... +..|+.++|.|.+.+.++ + .+
T Consensus       106 ~v~~~D-~G~Y~C~~~~~~~~~~~~~~~---~l~V~~~~~~~~~P~v~~~~~~~~~-~~~g~~v~L~C~~~g~~p~~~~v  180 (268)
T 3pl6_D          106 RTERGD-SAVYLCATSALGDTQYFGPGT---RLTVLEDLKNVFPPEVAVFEPSEAE-ISHTQKATLVCLATGFYPDHVEL  180 (268)
T ss_dssp             SCCGGG-CEEEEEEEESSSSSCEECCCE---EEEEESCGGGCBCCEEEEECCCHHH-HHHHSEEEEEEEEEEEBSSCEEE
T ss_pred             CCCccc-CEEEEEEEecCCCceeeCCcE---EEEEecCcccccCCceEEeCCCccc-ccCCCceEEEEEECcccCCCeEE
Confidence            999999 999999998731 22222222   55565311 1124544432 22222 566999999999998555 4 89


Q ss_pred             EEEeCCcccccCCce---------------EEecceEEEeccCCCC-CeEEEEEEEcCCCCc
Q psy14542        255 KWYKQDSPVEESDRI---------------QRIGSSLSISHVEESD-SGVWNCVANNSEGQD  300 (371)
Q Consensus       255 ~W~~~~~~~~~~~~~---------------~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~  300 (371)
                      .|+++|..+....+.               ....+.|.|.....+| +|.|+|.|.|.....
T Consensus       181 ~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~~  242 (268)
T 3pl6_D          181 SWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE  242 (268)
T ss_dssp             EEEESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             EEEECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCCC
Confidence            999999877543211               1122457888887777 999999999986654

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.71  E-value=3.4e-17  Score=129.92  Aligned_cols=168  Identities=14%  Similarity=0.227  Sum_probs=100.5

Q ss_pred             ecCCcEEEEEEecCCCC---CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCC
Q psy14542        109 DVGHRIELHCRVSPKRL---SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESD  185 (371)
Q Consensus       109 ~~g~~v~l~C~~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d  185 (371)
                      .+|++++|.|.+.+.++   ...+.|+|++..+......     .......|         .+.+.  ..|.|......|
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~-----~~~~~~~g---------~~~~~--~~l~i~~~d~~d   79 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTK-----PREEQYNS---------TYRVV--SVLTVLHQDWLN   79 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEEC-----CCEECTTS---------CEEEE--EEEECCHHHHHT
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccC-----CceeccCC---------cEEEE--EEEEEEHHHccC
Confidence            68999999999987652   3699999999876533110     00001112         22111  234455555667


Q ss_pred             ccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CC-CceEEEeCCccc
Q psy14542        186 RYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PL-PTIKWYKQDSPV  263 (371)
Q Consensus       186 ~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~  263 (371)
                       .|.|+|.+.+. .+......   .+.+. .....+|.+........ ...|+.+.|.|.+.|. |+ +.+.|+++|..+
T Consensus        80 -~g~Y~C~a~n~-~~~~~~~~---~v~~~-~~~~~~P~v~~~~~~~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~  152 (207)
T 1l6x_A           80 -GKEYKCKVSNK-ALPAPIEK---TISKA-KGQPREPQVYTLPPSRD-ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPE  152 (207)
T ss_dssp             -TCCEEEEEECT-TSSSCEEE---EECCC-CSCCBCCEEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             -CceEEEEEEcC-cCCcceEE---EeccC-CCCCcCCEEEEECCChH-HhcCCcEEEEEEEeCeECCCeEEEEEECCeec
Confidence             89999999987 44321121   22110 00114566554433322 2346679999999984 54 489999999876


Q ss_pred             ccCCc--eE-Eecc------eEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        264 EESDR--IQ-RIGS------SLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       264 ~~~~~--~~-~~~~------~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      .....  .. ..++      .|.|.....+|.|.|+|.|.|....
T Consensus       153 ~~~~~~~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  197 (207)
T 1l6x_A          153 NNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  197 (207)
T ss_dssp             CCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             cCccccCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence            53211  11 1222      3555555567899999999998654

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.71  E-value=5.6e-17  Score=133.96  Aligned_cols=203  Identities=11%  Similarity=0.070  Sum_probs=99.8

Q ss_pred             eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCC
Q psy14542        106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESD  185 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d  185 (371)
                      ..+.+|+++.|.|.+....+ ..+.|.-.-......             +.|         .    ....+.+.+++.  
T Consensus         9 ~~V~~G~sv~l~Cs~~c~~p-~~~~~~t~l~~~~~~-------------~~g---------~----~~~~~~l~~v~~--   59 (291)
T 1mq8_A            9 VILPRGGSVLVTCSTSCDQP-KLLGIETPLPKKELL-------------LPG---------N----NRKVYELSNVQE--   59 (291)
T ss_dssp             EEECTTCEEEEEEEECCSSC-SEEEEECSSCCCCCC-------------CSC---------S----SEEEEEEESCCS--
T ss_pred             cEEcCCCeEEEEEeCCCCCC-ccceEEecCCCcccc-------------cCC---------C----ceEEEEEEeccc--
Confidence            34589999999999975433 458885311000000             000         0    002467777763  


Q ss_pred             ccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CCC--ceEEEeCCcc
Q psy14542        186 RYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PLP--TIKWYKQDSP  262 (371)
Q Consensus       186 ~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~--~v~W~~~~~~  262 (371)
                       .|.|.|.+... .......+   .+.|...+  ..+.+...  ... +.+|+.++|+|.+.+. |..  +|+|++++..
T Consensus        60 -~~~y~C~~~~~-~~~~~~~v---~l~V~~~P--~~v~I~~~--~~~-~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~  129 (291)
T 1mq8_A           60 -DSQPMCYSNCP-DGQSTAKT---FLTVYWTP--ERVELAPL--PSW-QPVGKNLTLRCQVEGGAPRANLTVVLLRGEKE  129 (291)
T ss_dssp             -CCCCEEEEECS-SCEEEEEC---EEEECBCC--SCCCBCCC--CSB-CCSSCCCEEEEEECCCBSTTTEEEEEESSSSE
T ss_pred             -CCeEEEEEEcC-CccEEEEE---EEEEecCC--CCCEEecC--Ccc-ccCCCCEEEEEEecCccCCCCcEEEEEECCEE
Confidence             34699999755 33444444   66666321  22223222  223 8899999999999874 444  4899999987


Q ss_pred             cccCCceE-EecceEEEeccCCCCCeEEEEEEEcCCCC--------ceeEEEEEEecCcccccccceEEEEeeeeccccc
Q psy14542        263 VEESDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQ--------DKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRL  333 (371)
Q Consensus       263 ~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~--------~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~  333 (371)
                      +....... ....+|.+...+.+|.+.|+|+|.|..+.        .+....|.|.++|...        ..+..|.   
T Consensus       130 l~~~~~~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~--------~~~~~p~---  198 (291)
T 1mq8_A          130 LKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATP--------PQLVSPR---  198 (291)
T ss_dssp             EEEEECCBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC-------------------------
T ss_pred             eecccCCCCCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCC--------ceecCCc---
Confidence            75432110 11245777777777888999999997653        2455677787776510        0011110   


Q ss_pred             cccccccccceeeeeecCCeEEEeeeeecCCCC---ccccC
Q psy14542        334 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLP---TIKYR  371 (371)
Q Consensus       334 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p---~i~W~  371 (371)
                                   .+.+|+.++|.|.++|+||+   .|.|+
T Consensus       199 -------------~l~eG~~v~l~C~~~g~~P~~~~~v~w~  226 (291)
T 1mq8_A          199 -------------VLEVDTQGTVVCSLDGLFPVSEAQVHLA  226 (291)
T ss_dssp             -----------------------------------------
T ss_pred             -------------CccCCCeEEEEEEcCCCCCCcccEEEEE
Confidence                         46699999999999998665   58885

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.71  E-value=2.2e-16  Score=129.70  Aligned_cols=189  Identities=15%  Similarity=0.190  Sum_probs=111.5

Q ss_pred             CceeeecCCcEEEEEEecCCCC-CceEEEeeCC--EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cce
Q psy14542        104 NQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDG--LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGE  175 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~  175 (371)
                      ....+.+|++++|.|.+.+.+. ...+.|+|..  ..+.    ..+.+....  ....| .....+++.+..     +..
T Consensus        14 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~----~l~~~~~~~--~~~~~-~~~~~~R~~~~~~~~~~~~s   86 (261)
T 2xqy_G           14 GAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLE----WIGRIDPSD--NETHY-NQDFKDKVTLTVDKSSSTVY   86 (261)
T ss_dssp             SEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEE----EEEEECTTT--CCEEE-CGGGTTTEEEEEEGGGTEEE
T ss_pred             CCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcE----EEEEEecCC--Cceee-CCccCCcEEEEecCCCCEEE
Confidence            3444589999999999987651 3789999863  2111    111111000  00000 000022343332     357


Q ss_pred             EEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CCC-c
Q psy14542        176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PLP-T  253 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~  253 (371)
                      |.|.+++.+| +|.|.|.+.+. .+..........|.|..... .+|.+........ +..|+.++|.|.+.+. |.+ .
T Consensus        87 L~I~~v~~~D-sG~Y~C~~~~~-~~~~~~~~~~~~L~V~~~~~-~~P~v~~~~p~~~-v~~g~~v~L~C~~~g~~P~~i~  162 (261)
T 2xqy_G           87 IQLSSLTSED-SAVYYCGRLGY-VYGFDYWGQGTTLTVSSAKT-TAPSVYPLAPVCG-DTTGSSVTLGCLVKGYFPEPVT  162 (261)
T ss_dssp             EEECSCCGGG-CEEEEEEEECT-TSSEEEECCCEEEEECSSCC-BCCEEEEECCCCC---CCSEEEEEEEEEEEBSSCCE
T ss_pred             EEEcCCCccc-CeEEEEEEecC-CCcceEECCCEEEEEccCCC-CCCeEEEeCCCcc-ccCCCcEEEEEEEEeEeCCCCE
Confidence            9999999999 99999999985 32111100112666663211 3444443332223 6789999999999874 766 8


Q ss_pred             eEEEeCCcccccC--Cc-----eEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542        254 IKWYKQDSPVEES--DR-----IQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL  304 (371)
Q Consensus       254 v~W~~~~~~~~~~--~~-----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  304 (371)
                      +.|++++..+...  ..     .....+.|.|..+..+| |.|+|.|.|.........
T Consensus       163 v~W~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~~~~  219 (261)
T 2xqy_G          163 LTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDK  219 (261)
T ss_dssp             EEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             EEEecCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCccEEE
Confidence            9999998765311  11     11223578999888888 999999999776644333

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.71  E-value=6.7e-16  Score=120.46  Aligned_cols=153  Identities=14%  Similarity=0.154  Sum_probs=106.6

Q ss_pred             eeecCCcEEEEEEecCCCCCc--eEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542        107 VVDVGHRIELHCRVSPKRLSS--AKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES  184 (371)
Q Consensus       107 ~~~~g~~v~l~C~~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~  184 (371)
                      .+..|++++|.|.+ +.+. +  .|.|++.+..+  . +                       .........|.|.+++.+
T Consensus        18 ~v~~G~sv~L~C~a-~~p~-P~~~i~W~~~~~~l--~-~-----------------------~~~~~~~~~L~I~~v~~~   69 (210)
T 1gsm_A           18 AVALGASRQLTCRL-ACAD-RGASVQWRGLDTSL--G-A-----------------------VQSDTGRSVLTVRNASLS   69 (210)
T ss_dssp             EEETTCCEEEEEEE-CCSS-TTCEEEEESSTTTT--C-C-----------------------EEEESSEEEEEECSCCGG
T ss_pred             EEeCCCCEEEEEEC-CCCC-CCcceEEeeccccc--C-c-----------------------EEecCCccEEEECccCcc
Confidence            55899999999999 7766 5  99999854322  0 0                       000111257999999999


Q ss_pred             CccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CC----CceEEEeC
Q psy14542        185 DRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PL----PTIKWYKQ  259 (371)
Q Consensus       185 d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~----~~v~W~~~  259 (371)
                      | .|.|.|.+.+. .+......   .|.|.     .+|........ . +..|+.+ |.|.+.+. |.    +++.|+++
T Consensus        70 d-~G~Y~C~a~n~-~~~~~~~~---~ltV~-----~~P~~~~i~~~-~-~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~  136 (210)
T 1gsm_A           70 A-AGTRVCVGSCG-GRTFQHTV---QLLVY-----AFPNQLTVSPA-A-LVPGDPE-VACTAHKVTPVDPNALSFSLLVG  136 (210)
T ss_dssp             G-CEEEEEEEEET-TEEEEEEE---EEEEE-----BCCSEEEEESS-S-BCTTCCE-EEEEEEEEBCCCTTTEEEEEEET
T ss_pred             c-CceEEEEEEeC-CCceEEEE---EEEEE-----ecCCCcEEccc-e-EEeCCce-EEEEeCCCCCCCCCCcEEEEEEC
Confidence            9 99999999998 66666666   88888     56654432222 3 6778888 99999874 64    47999999


Q ss_pred             CcccccCCc----eE--------------EecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        260 DSPVEESDR----IQ--------------RIGSSLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       260 ~~~~~~~~~----~~--------------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      +..+.....    ..              .-.++|.+.....+|.++|+|+|.+..-..
T Consensus       137 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~  195 (210)
T 1gsm_A          137 GQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGL  195 (210)
T ss_dssp             TEECTTCEECCCEEEECTTCCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETTE
T ss_pred             CEEcccccccccceecccccccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCCCC
Confidence            998854321    10              011234444677777899999999876443

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.71  E-value=7.3e-16  Score=125.89  Aligned_cols=171  Identities=18%  Similarity=0.257  Sum_probs=106.1

Q ss_pred             eeeecCCcEEEEEEecCCCC----CceEEEeeCC--EEeeeCCeeEEEEcc--cCcCCCeeEEEEEeCCceeEe---ccc
Q psy14542        106 VVVDVGHRIELHCRVSPKRL----SSAKAWLKDG--LVLRRNSDEVLVLDR--VQREDAGMYQCHIEDGKYHML---SSG  174 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~----~~~v~W~~~~--~~~~~~~~~~~~~~~--~~~~~~g~y~~~~~~~~~~~~---~~~  174 (371)
                      ..+.+|++++|.|.+.+.+.    .+.+.|++..  ..+.     .+....  ......+         ++.+.   ...
T Consensus        11 ~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~-----~~~~~~~~~~~~~~~---------r~~~~~~~~~~   76 (247)
T 1svz_A           11 LPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQ-----LLIYKVSNRFSGVPD---------RFSGSGSGTDF   76 (247)
T ss_dssp             EEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEE-----EEEETTTEECTTCCT---------TEEEEEETTEE
T ss_pred             EEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCce-----EEEEEecccCCCCCC---------cEEeccCCCEE
Confidence            34589999999999988762    3799999843  1111     000000  0000112         22222   124


Q ss_pred             eEEEEEeecCCccceeEEEeeccccce-eeeeeccceeeeecchhc--------cccceeeeeeeeeeeecCCeEEEEEE
Q psy14542        175 ELIIHQVDESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKRL--------LSAAKMFEKHRILNVKKDESVILPCS  245 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~~--------~~p~~~~~~~~~~~~~~g~~~~l~C~  245 (371)
                      .|.|.+++.+| +|.|.|.+.+. .+. .....   .|.|......        .++.....+.... +..|++++|.|.
T Consensus        77 ~L~I~~v~~~D-~G~Y~C~~~n~-~~~~~~~~~---~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~G~~v~L~C~  150 (247)
T 1svz_A           77 TLKISRVEAED-LGIYYCFQGSH-FPPTFGGGT---KLEIKGGGGSGGGGSGGGGSEVQLQQSGPEL-KKPGETVKISCK  150 (247)
T ss_dssp             EEEESSCCGGG-CEEEEEEECSS-SSCEECCCE---EEEEC---------------CCEEEECCCEE-ECTTCCEEEEEE
T ss_pred             EEEECCCCHHH-CEEEEEEEccC-CccEECCCE---EEEEECCccccccccccccCceEEeCCCcee-ecCCCcEEEEEE
Confidence            79999999999 99999999887 332 22223   5666632110        0122222333344 899999999999


Q ss_pred             eecCC--CCceEEEeCC--cccc-----------------cCCceEEe------cceEEEeccCCCCCeEEEEEEEcC
Q psy14542        246 AQGNP--LPTIKWYKQD--SPVE-----------------ESDRIQRI------GSSLSISHVEESDSGVWNCVANNS  296 (371)
Q Consensus       246 ~~~~p--~~~v~W~~~~--~~~~-----------------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~a~n~  296 (371)
                      +.+.+  .+.+.|++++  ..+.                 ...++...      ..+|.|.++..+|+|.|.|.|.|.
T Consensus       151 ~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          151 ATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             EESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             EcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            99875  4689999964  2110                 12344422      147999999999999999999985

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.71  E-value=1.9e-16  Score=131.74  Aligned_cols=173  Identities=14%  Similarity=0.202  Sum_probs=108.1

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCC-CCCCeeEEEeCC--EE-------------------------Ee---eCCeeE
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDG--LV-------------------------LR---RNSDEV   60 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~~--~~-------------------------~~---~~~~~~   60 (371)
                      .+.. |.. +.+.+|++++|.|.+... .+...+.|+|..  ..                         +.   .....+
T Consensus         3 ~v~q-p~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   80 (280)
T 3fku_X            3 QLVQ-SGA-EVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAY   80 (280)
T ss_dssp             CEEC-CCC-CEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEE
T ss_pred             eEEc-CCC-EEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEE
Confidence            4444 555 889999999999976542 255789999731  00                         00   003358


Q ss_pred             EEEccCCcCCCeEEEEEEEcCC--------CC-eEEEEEEEEec--------------ceeeEecCCceeeecCCcEEEE
Q psy14542         61 LVLDRVQREDAGMYQCHVSADD--------DS-AQMSAQVILGG--------------ELVEIASSNQVVVDVGHRIELH  117 (371)
Q Consensus        61 l~i~~~~~~d~G~Y~C~~~~~~--------~~-~~~~~~l~v~~--------------~~~~~~~~~~~~~~~g~~v~l~  117 (371)
                      |.|.+++.+|+|.|.|.+.+..        .. ......|.|..              .++.+...+...+.+|++++|.
T Consensus        81 L~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~v~~G~~v~L~  160 (280)
T 3fku_X           81 MDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPSVSKGLRQTATLT  160 (280)
T ss_dssp             EEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSEEEECTTCCEEEE
T ss_pred             EEECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCcEEEecCCCEEEE
Confidence            9999999999999999998761        11 12345666663              1444555555555899999999


Q ss_pred             EEecC-CCCCceEEEeeCC--EEeeeCCeeEEEEcc-cCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEE
Q psy14542        118 CRVSP-KRLSSAKAWLKDG--LVLRRNSDEVLVLDR-VQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCR  193 (371)
Q Consensus       118 C~~~~-~~~~~~v~W~~~~--~~~~~~~~~~~~~~~-~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~  193 (371)
                      |.+.+ .+....+.|++..  ..+..-    +.... ......+.|......      ....|.|.+++.+| +|.|.|.
T Consensus       161 C~~~~~~~~~~~v~W~r~~~~~~~~~l----~~~~~~~~~~~~~r~~~~~~~------~~~~L~I~~v~~~D-sG~Y~C~  229 (280)
T 3fku_X          161 CTGNSNNVGNQGAAWLQQHQGHPPKLL----SYRNNDRPSGISERFSASRSG------NTASLTITGLQPED-EADYYCS  229 (280)
T ss_dssp             EECCCCCCCTTCCEEEEECSSSCCEES----CCTTCCCCSSSCTTEEEEEET------TEEEEEECSCCGGG-CSEEEEE
T ss_pred             EEecCCCCCCceEEEEEECCCCCCEEE----EEeccccCCCCCCCEEEEccC------CEEEEEECCCCHHH-CEEEEEE
Confidence            99987 3323789999832  211100    00000 000011212111111      12469999999999 9999999


Q ss_pred             eecc
Q psy14542        194 GVNK  197 (371)
Q Consensus       194 ~~~~  197 (371)
                      +.+.
T Consensus       230 ~~~~  233 (280)
T 3fku_X          230 TWDS  233 (280)
T ss_dssp             EEET
T ss_pred             EecC
Confidence            9886

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.71  E-value=1.5e-16  Score=126.52  Aligned_cols=163  Identities=15%  Similarity=0.251  Sum_probs=104.1

Q ss_pred             CCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeC--CEEEe-----------------eC----------CeeEEEEccC
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKD--GLVLR-----------------RN----------SDEVLVLDRV   66 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~--~~~~~-----------------~~----------~~~~l~i~~~   66 (371)
                      |.. +.+.+|++++|.|.+.... +.+.+.|+|+  +....                 ..          ...+|.|.++
T Consensus         7 p~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   85 (210)
T 3d9a_H            7 SGP-SLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSV   85 (210)
T ss_dssp             ESC-SEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCC-EEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCC
Confidence            444 6899999999999765432 2478999984  21110                 00          2358999999


Q ss_pred             CcCCCeEEEEEEEcCCCCeEEEEEEEEec---ceeeEec-CCceeeecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeC
Q psy14542         67 QREDAGMYQCHVSADDDSAQMSAQVILGG---ELVEIAS-SNQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRN  141 (371)
Q Consensus        67 ~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~---~~~~~~~-~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~  141 (371)
                      +.+|+|.|.|.+.+.. .......|.|..   .+|.+.. .+...+..|+.++|.|.+.+. |.+..+.|++++..+...
T Consensus        86 ~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~  164 (210)
T 3d9a_H           86 TTEDTATYYCANWDGD-YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH  164 (210)
T ss_dssp             CGGGCEEEEEEETTSS-CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEE
T ss_pred             CcccCEEEEEEEecCc-ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceE
Confidence            9999999999998753 222234566652   2333332 222334689999999999887 552399999988753211


Q ss_pred             CeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecccccee
Q psy14542        142 SDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS  202 (371)
Q Consensus       142 ~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~  202 (371)
                      .....     . .+ |.|         ..  .+.|.|.++.. | .|.|+|.+.|. .+..
T Consensus       165 ~~~~~-----~-~~-~~~---------~~--~s~L~i~~~~~-~-~g~Y~C~a~n~-~~~~  204 (210)
T 3d9a_H          165 TFPAV-----L-QS-DLY---------TL--SSSVTVPSSTW-P-SETVTCNVAHP-ASST  204 (210)
T ss_dssp             ECCCE-----E-ET-TEE---------EE--EEEEEEEGGGT-T-TSCCEEEEEEG-GGTE
T ss_pred             EcCCc-----c-CC-CcE---------EE--EEEEEEcHHHc-C-CCcEEEEEEeC-CCCc
Confidence            00000     0 01 222         11  25788888776 5 49999999998 5543

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.71  E-value=1.7e-16  Score=131.42  Aligned_cols=174  Identities=14%  Similarity=0.193  Sum_probs=110.3

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--C------------EEE------------e--eCCeeEE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--G------------LVL------------R--RNSDEVL   61 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~------------~~~------------~--~~~~~~l   61 (371)
                      .+.+...|.. +.+.+|++++|.|.+. . +...+.|+|.  +            ...            .  .....+|
T Consensus        27 ~~~v~~~p~~-v~v~~G~~v~L~C~~~-~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL  103 (270)
T 3qib_D           27 GMKVIQTPRY-LVKGQGQKAKMRCIPE-K-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSL  103 (270)
T ss_dssp             -CCCEEECSE-EEEETTSCEEEEEECC-T-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEE
T ss_pred             ceeEEeCCCe-EEEcCCCCEEEEEEec-C-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEE
Confidence            4667777776 8999999999999653 3 5678999981  1            110            0  0136789


Q ss_pred             EEccCCcCCCeEEEEEEEcCCCC----eEEEEEEEEec-----ceeeEecC-Cc-eeeecCCcEEEEEEecC-CCCCceE
Q psy14542         62 VLDRVQREDAGMYQCHVSADDDS----AQMSAQVILGG-----ELVEIASS-NQ-VVVDVGHRIELHCRVSP-KRLSSAK  129 (371)
Q Consensus        62 ~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~~l~v~~-----~~~~~~~~-~~-~~~~~g~~v~l~C~~~~-~~~~~~v  129 (371)
                      .|.+++.+|+|.|.|.+.+....    ......|.|..     .+|.+... +. ..+..|+.++|.|.+.+ .|.+..+
T Consensus       104 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v  183 (270)
T 3qib_D          104 EIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL  183 (270)
T ss_dssp             EESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEE
T ss_pred             EECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEE
Confidence            99999999999999999864321    12334566652     13333221 11 12245999999999988 4443489


Q ss_pred             EEeeCCEEeeeCCeeE-EEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        130 AWLKDGLVLRRNSDEV-LVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       130 ~W~~~~~~~~~~~~~~-~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      .|+++|..+....... ...........|.|.         +.  +.|.|.....+|+.|.|+|.+.+.
T Consensus       184 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~--s~L~i~~~~~~d~~g~YtC~v~~~  241 (270)
T 3qib_D          184 SWWVNGKEVHSGVCTDPQPLKEQPALNDSRYA---------LS--SRLRVSATFWQNPRNHFRCQVQFY  241 (270)
T ss_dssp             EEEETTEEECTTEEECSSCEESCTTSSSCCEE---------EE--EEEEEEHHHHHSTTCEEEEEEEEC
T ss_pred             EEEECCEECCCCcccccccccccccCCCCCEE---------EE--EEEEEcHHHhccCCCeEEEEEEec
Confidence            9999999886532110 000111222334332         21  467777776554489999999987

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.71  E-value=1.2e-17  Score=134.87  Aligned_cols=176  Identities=12%  Similarity=0.178  Sum_probs=112.0

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCC--CeeEEEeCCEEE-eeC-------------CeeEEEEccCCcCCCeE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLS--SAKAWLKDGLVL-RRN-------------SDEVLVLDRVQREDAGM   73 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~--~~~~W~~~~~~~-~~~-------------~~~~l~i~~~~~~d~G~   73 (371)
                      +|.+.+.+.....+.+|+.++|.|.+....|.  ..+.|+++|..+ ...             ....|.|.+++.+|+|.
T Consensus        12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~   91 (231)
T 2w59_A           12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGER   91 (231)
T ss_dssp             CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCC
T ss_pred             CCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCE
Confidence            45666544443667899999999976554563  489999988765 211             12469999999999999


Q ss_pred             EEEEEEcCCCCeEEEEEEEEe---cceeeEec-CCceeeecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeE--E
Q psy14542         74 YQCHVSADDDSAQMSAQVILG---GELVEIAS-SNQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEV--L  146 (371)
Q Consensus        74 Y~C~~~~~~~~~~~~~~l~v~---~~~~~~~~-~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~--~  146 (371)
                      |+|.+.+..+.......|.+.   ..+|.+.. .+......|..++|.|.+.+.++ .+.++|+++|..+.......  .
T Consensus        92 Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~  171 (231)
T 2w59_A           92 FTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAV  171 (231)
T ss_dssp             EEEEEECTTCSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCC
T ss_pred             EEEEEEcCCCCCceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCcc
Confidence            999999876554333333221   12333322 11111123567999999988643 37999999999886543110  0


Q ss_pred             EEcccCcC---CC-eeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        147 VLDRVQRE---DA-GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       147 ~~~~~~~~---~~-g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      ........   .. |.|         ...  +.|.|......| .|.|+|.|.|.
T Consensus       172 ~~~~~~~~~~~~d~gt~---------~~~--s~L~i~~~~~~~-~g~YtC~v~n~  214 (231)
T 2w59_A          172 LPEERTANGAGGDGDTF---------FVY--SKMSVETAKWNG-GTVFACMAVHE  214 (231)
T ss_dssp             EECCTTSCC---CCCCE---------EEE--EEEEEEHHHHHT-TCCEEEEEECT
T ss_pred             ccCcccccccCCCCCeE---------EEE--EEEEEeHHHcCC-CCcEEEEEEcC
Confidence            00000000   11 322         222  578888888888 99999999987

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.71  E-value=3.1e-16  Score=125.84  Aligned_cols=159  Identities=16%  Similarity=0.226  Sum_probs=104.1

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEeC--CE--E-Ee--------------e-------------CCeeEEEEccCC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKD--GL--V-LR--------------R-------------NSDEVLVLDRVQ   67 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~--~~--~-~~--------------~-------------~~~~~l~i~~~~   67 (371)
                      +.+.+|++++|.|.+... .+...+.|+|.  +.  . +.              .             ....+|.|.+++
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   89 (221)
T 3m8o_H           10 GLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSLK   89 (221)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSCC
T ss_pred             EEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCCC
Confidence            789999999999976532 23578999972  11  1 10              0             034479999999


Q ss_pred             cCCCeEEEEEEEcCC--CCeEEEEEEEEec---ceeeEe-cCCceeeecCCcEEEEEEecC-CCC-CceEEEeeCCEEee
Q psy14542         68 REDAGMYQCHVSADD--DSAQMSAQVILGG---ELVEIA-SSNQVVVDVGHRIELHCRVSP-KRL-SSAKAWLKDGLVLR  139 (371)
Q Consensus        68 ~~d~G~Y~C~~~~~~--~~~~~~~~l~v~~---~~~~~~-~~~~~~~~~g~~v~l~C~~~~-~~~-~~~v~W~~~~~~~~  139 (371)
                      .+|+|.|.|.+.+..  ........|.|..   .+|.+. ..+... .+|+.++|.|.+.+ .|. ++.+.|++++..+.
T Consensus        90 ~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~~  168 (221)
T 3m8o_H           90 SDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST-QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVT  168 (221)
T ss_dssp             GGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC-CCTTEEEEEEEEEEEBSSCSEEEEESCCSTTCE
T ss_pred             HHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc-ccCCCEEEEEEEEeeECCCCEEEEEEECCEECc
Confidence            999999999998763  1223334566641   233333 222222 68999999999988 443 36999999887653


Q ss_pred             eCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        140 RNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       140 ~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      ....     ........|         .+...  +.|.|.....+| .|.|+|.+.+.
T Consensus       169 ~~~~-----~~~~~~~~~---------~~~~~--s~L~i~~~~~~d-~g~ytC~v~~~  209 (221)
T 3m8o_H          169 ARNF-----PPSQDASGD---------LYTTS--SQLTLPATQCLA-GKSVTCHVKHY  209 (221)
T ss_dssp             EEEC-----CCEECSSSS---------CEEEE--EEEEEEGGGSCT-TCEEEEEEEET
T ss_pred             eEEc-----CceeeCCCC---------cEEEE--EEEEECHHHcCC-CCeEEEEEEEC
Confidence            2110     000001223         33322  578899999989 99999999987

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.70  E-value=2.7e-16  Score=126.02  Aligned_cols=162  Identities=15%  Similarity=0.212  Sum_probs=106.7

Q ss_pred             EEEeccCcEEEEEEecCCC-CCCeeEEEeCC--E---EEe---------------eC----------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--L---VLR---------------RN----------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~--~---~~~---------------~~----------~~~~l~i~~~~~~   69 (371)
                      +.+.+|++++|.|.+.... ....+.|+|..  .   .+.               ..          ...+|.|.+++.+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   89 (220)
T 2fbj_H           10 GLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSE   89 (220)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGG
T ss_pred             eEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCChh
Confidence            7899999999999765322 25679999842  1   111               00          2458999999999


Q ss_pred             CCeEEEEEEEcCCCC---eEEEEEEEEec---ceeeEecCCceeeecCCcEEEEEEecCCCC--CceEEEeeCCEEeeeC
Q psy14542         70 DAGMYQCHVSADDDS---AQMSAQVILGG---ELVEIASSNQVVVDVGHRIELHCRVSPKRL--SSAKAWLKDGLVLRRN  141 (371)
Q Consensus        70 d~G~Y~C~~~~~~~~---~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~~v~W~~~~~~~~~~  141 (371)
                      |+|.|.|.+.+..+.   ......|.|..   .+|.+...+...+..|+.++|.|.+.+..+  ++.+.|++++..+...
T Consensus        90 DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~~  169 (220)
T 2fbj_H           90 DTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTV  169 (220)
T ss_dssp             GCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEECCCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEE
T ss_pred             hCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEeecccccCCCcEEEEEEEEeEECCCcEEEEEecCCEecceE
Confidence            999999999876432   11235677763   234443333223468999999999987633  3799999988754210


Q ss_pred             CeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccce
Q psy14542        142 SDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGA  201 (371)
Q Consensus       142 ~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~  201 (371)
                      .      ........|         .+...  +.|.|......| .|.|+|.+.|. .+.
T Consensus       170 ~------~~~~~~~~g---------~~~~~--s~L~i~~~~~~d-~g~ytC~v~n~-~~~  210 (220)
T 2fbj_H          170 N------FPPALASGG---------RYTMS--NQLTLPAVECPE-GESVKCSVQHD-SNP  210 (220)
T ss_dssp             E------CCCEECSSS---------CEEEE--EEEEECGGGSCT-TCEEEEEEEET-TSC
T ss_pred             e------cCceECCCC---------CEEEE--EEEEECHHHcCC-CCeEEEEEEcC-CCc
Confidence            0      000001222         33322  568888888888 99999999998 544

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.70  E-value=1.8e-16  Score=129.94  Aligned_cols=193  Identities=16%  Similarity=0.181  Sum_probs=114.1

Q ss_pred             CceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEE
Q psy14542        104 NQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELI  177 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~  177 (371)
                      ....+.+|++++|.|.+.+.. ....+.|+|.....  .......+....  .. .+......+++.+..     +..|.
T Consensus         8 ~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~--~~~~~~~~~~~~--~~-~~~~~~~~~R~~~~~~~~~~~~sL~   82 (253)
T 3liz_H            8 GGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDK--RLELVATINSNG--AS-TYYPDTVKGRFTISRDNAKNTLFLQ   82 (253)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTS--CEEEEEEECTTS--SC-EECCTTTTTTCEEEEEGGGTEEEEE
T ss_pred             CCEEECCCCcEEEEEEeeCccccCceEEEEEECCCC--CcEEEEEEecCC--Cc-cccCcccCCcEEEEEeCCCCEEEEE
Confidence            344558999999999997632 22689999843100  001111111000  00 000000022444332     24599


Q ss_pred             EEEeecCCccceeEEEeeccc---cceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-CCCC-
Q psy14542        178 IHQVDESDRYRSYQCRGVNKL---TGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLP-  252 (371)
Q Consensus       178 i~~~~~~d~~g~y~C~~~~~~---~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-  252 (371)
                      |.+++.+| +|.|.|.+.+..   ........   .+.|... ...+|.+........ +..|+.+.|.|.+.+ .|.+ 
T Consensus        83 I~~v~~~D-sG~Y~C~~~~~~~~~~~~~~~~~---~l~V~~~-~~~~P~i~~~~~~~~-~~~g~~v~L~C~~~g~~P~~~  156 (253)
T 3liz_H           83 MSSLKSED-TAMYYCTRDPAGRAWFAYWGQGT---LVTVSAA-KTTPPSVYPLAPGSA-AQTNSMVTLGCLVKGYFPEPV  156 (253)
T ss_dssp             ECSCCGGG-CEEEEEEECCBTTTBCCEECCCE---EEEECSS-CCBCCEEEEECC-------CCEEEEEEEEEEEBSSCC
T ss_pred             ECCCChhh-CEEEEEEEecCCcceeeEECCCE---EEEEecc-CCCCCeEEEecCCcc-cCCCCcEEEEEEEeeEeCCCe
Confidence            99999999 999999998751   11112222   5555421 114555553333333 667999999999998 6766 


Q ss_pred             ceEEEeCCcccc--------cCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542        253 TIKWYKQDSPVE--------ESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA  309 (371)
Q Consensus       253 ~v~W~~~~~~~~--------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  309 (371)
                      .+.|++++..+.        ..+.+ ...+.|.|.....+| |.|+|.|.|..+.......|.+.
T Consensus       157 ~v~W~~~~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~  219 (253)
T 3liz_H          157 TVTWNSGSLSSGVHTFPAVLQSDLY-TLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR  219 (253)
T ss_dssp             EEEEGGGTBCTTEEECCCEEETTEE-EEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             EEEEEeCCeecceEeCCccccCCeE-EEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence            899999887331        11112 223679999999999 99999999999987777776655

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.70  E-value=4.2e-16  Score=128.43  Aligned_cols=172  Identities=18%  Similarity=0.275  Sum_probs=106.2

Q ss_pred             eeeecCCcEEEEEEecCCCC-----CceEEEeeCC--EEeeeCCeeEEEEcc-cCcCCCeeEEEEEeCCceeEe---ccc
Q psy14542        106 VVVDVGHRIELHCRVSPKRL-----SSAKAWLKDG--LVLRRNSDEVLVLDR-VQREDAGMYQCHIEDGKYHML---SSG  174 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~-----~~~v~W~~~~--~~~~~~~~~~~~~~~-~~~~~~g~y~~~~~~~~~~~~---~~~  174 (371)
                      ..+.+|++++|.|.+.+.+.     .+.+.|++..  ..+.    ..+.... ......+         ++.+.   ...
T Consensus        15 v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~----~l~~~~~~~~~~~~~---------R~~~~~~~~~~   81 (264)
T 2gjj_A           15 LPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPK----LLISWAFTRKSGVPD---------RFTGSGSGTDF   81 (264)
T ss_dssp             EEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCE----EEEETTTEECTTSCT---------TEEEEEETTEE
T ss_pred             EEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcE----EEEEecccCCCCCCc---------cEEEecCCCEE
Confidence            34589999999999988761     3789999852  2110    0000000 0000112         33222   125


Q ss_pred             eEEEEEeecCCccceeEEEeeccccce-eeeeeccceeeeecchh-------------ccccceee-eeeeeeeeecCCe
Q psy14542        175 ELIIHQVDESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKR-------------LLSAAKMF-EKHRILNVKKDES  239 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~-------------~~~p~~~~-~~~~~~~~~~g~~  239 (371)
                      .|.|.+++.+| +|.|.|.+.+. .+. .....   .|.|...+.             ...|.+.. .+.... +..|++
T Consensus        82 ~L~I~~v~~~D-sG~Y~C~~~~~-~~~~~~~~~---~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~G~~  155 (264)
T 2gjj_A           82 TLTIGSVKAED-LAVYYCQQYSN-YPWTFGGGT---RLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEV-VKTGAS  155 (264)
T ss_dssp             EEEESSCCGGG-CEEEEEEECSS-SSCEECCCE---EEEEECC-------------------CCEEEECCCEE-ECTTCC
T ss_pred             EEEECCCCHHH-CEEEEEEEecC-CccEecCCE---EEEEEcCCcccccccccccccccccCcEEEeCCCCEE-EcCCCc
Confidence            79999999999 99999999886 331 22222   566663210             00122222 222234 899999


Q ss_pred             EEEEEEeecCCC--CceEEEeCC--cccc-----------------cCCceEEe------cceEEEeccCCCCCeEEEEE
Q psy14542        240 VILPCSAQGNPL--PTIKWYKQD--SPVE-----------------ESDRIQRI------GSSLSISHVEESDSGVWNCV  292 (371)
Q Consensus       240 ~~l~C~~~~~p~--~~v~W~~~~--~~~~-----------------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~  292 (371)
                      ++|.|.+.+.+.  +.+.|+++.  ..+.                 ...++...      ..+|.|.++..+|+|.|.|.
T Consensus       156 v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~  235 (264)
T 2gjj_A          156 VKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCV  235 (264)
T ss_dssp             EEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             EEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEE
Confidence            999999998764  789999863  2211                 02333321      24799999999999999999


Q ss_pred             EEcC
Q psy14542        293 ANNS  296 (371)
Q Consensus       293 a~n~  296 (371)
                      +.|.
T Consensus       236 a~n~  239 (264)
T 2gjj_A          236 RSGN  239 (264)
T ss_dssp             EECS
T ss_pred             EecC
Confidence            9985

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.70  E-value=5.7e-16  Score=129.61  Aligned_cols=203  Identities=16%  Similarity=0.244  Sum_probs=115.6

Q ss_pred             CceeeecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEE
Q psy14542        104 NQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELI  177 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~  177 (371)
                      +...+.+|++++|.|.+.+.+. ...+.|++....  ......+......  ....+. ....+++.+..     ...|.
T Consensus        30 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~--~~~~~l~~~~~~~--~~~~~~-~~~~~R~~~~~~~~~~~~sL~  104 (291)
T 2gki_A           30 GPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPG--QGLEWIGYINPYN--DGTKYN-EKFKGKATLTSDKSSSTAYME  104 (291)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTT--SCCEEEEEEETTT--TEEEEC-GGGBTTBCEEEEGGGTEEEEE
T ss_pred             CcEEecCCCCEEEEEeccCCcccccEEEEEEECCC--CCcEEEEEEecCC--CccccC-cccCCCEEEEEeCCCCEEEEE
Confidence            3445589999999999987652 378999985310  0001111111000  000000 00012333321     25799


Q ss_pred             EEEeecCCccceeEEEeeccccceee-eeeccceeeeecc-----------hhccccceeeeeeeeeeeecCCeEEEEEE
Q psy14542        178 IHQVDESDRYRSYQCRGVNKLTGASL-LSVNRGRLSLTEN-----------KRLLSAAKMFEKHRILNVKKDESVILPCS  245 (371)
Q Consensus       178 i~~~~~~d~~g~y~C~~~~~~~~~~~-~~~~~~~l~v~~~-----------~~~~~p~~~~~~~~~~~~~~g~~~~l~C~  245 (371)
                      |.+++.+| +|.|.|.+.+...+... .......|.|...           ....++.+...+.... +.+|++++|.|.
T Consensus       105 I~~v~~~D-sG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~-v~~G~~v~L~C~  182 (291)
T 2gki_A          105 LSSLTSED-SAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLA-VSAGEKVTMSCK  182 (291)
T ss_dssp             ECSCCGGG-CEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEE-EETTSCEEEEEE
T ss_pred             ECcCCHHH-CEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEE-EcCCCcEEEEEE
Confidence            99999999 99999999987212111 1001125666531           0001233333344445 899999999999


Q ss_pred             eecCCCC------ceEEEeCC--cccc------------cCCceEE--e--cceEEEeccCCCCCeEEEEEEEcCCCCc-
Q psy14542        246 AQGNPLP------TIKWYKQD--SPVE------------ESDRIQR--I--GSSLSISHVEESDSGVWNCVANNSEGQD-  300 (371)
Q Consensus       246 ~~~~p~~------~v~W~~~~--~~~~------------~~~~~~~--~--~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-  300 (371)
                      +.+.+.+      .+.|+++.  ..+.            ...++..  .  ..+|.|.++..+|+|.|+|.|.|..... 
T Consensus       183 ~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~f  262 (291)
T 2gki_A          183 SSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHMYTF  262 (291)
T ss_dssp             ESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             cCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCceEE
Confidence            9888765      89999963  2211            0234432  1  2379999999999999999999854321 


Q ss_pred             eeEEEEEEecCcc
Q psy14542        301 KMQLFIQYAHGKY  313 (371)
Q Consensus       301 ~~~~~l~v~~~p~  313 (371)
                      ..-..|.|...+.
T Consensus       263 g~gt~l~v~~~~~  275 (291)
T 2gki_A          263 GSGTKLEIKHHHH  275 (291)
T ss_dssp             CCCEEEEEECC--
T ss_pred             cCCEEEEEEeeEc
Confidence            1223455655555

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.70  E-value=8.4e-17  Score=130.31  Aligned_cols=168  Identities=12%  Similarity=0.170  Sum_probs=106.5

Q ss_pred             eecCCcEEEEEEecCC---CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542        108 VDVGHRIELHCRVSPK---RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES  184 (371)
Q Consensus       108 ~~~g~~v~l~C~~~~~---~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~  184 (371)
                      +.+|+.++|.|.+.+.   |.+..++|++++..+......     .......|         ++.  ..+.|.|.+++.+
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~-----~~~~~~~~---------~~~--~~s~L~I~~~~~~   92 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTH-----APEKQSNS---------TLR--SVSELPIVERDWL   92 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEEC-----CCEECTTS---------CEE--EEEEEECCHHHHH
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccc-----cceEcCCC---------cEE--EEEEEEEEhhHcc
Confidence            4689999999999876   543489999988665432110     00001112         222  2257999999999


Q ss_pred             CccceeEEEeeccccceeeeeecccee--eeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-CCC-CceEEEeCC
Q psy14542        185 DRYRSYQCRGVNKLTGASLLSVNRGRL--SLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPL-PTIKWYKQD  260 (371)
Q Consensus       185 d~~g~y~C~~~~~~~~~~~~~~~~~~l--~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-~~v~W~~~~  260 (371)
                      | .|.|+|.+.+. .+...... ...+  .+.     .+|.+...+.... ...|+.+.|.|.+.| +|. ..+.|+++|
T Consensus        93 D-~g~Y~C~~~~~-~~~~~~~~-~v~~~~~~~-----~~P~v~v~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g  163 (239)
T 1i1c_A           93 N-GKTFKCKVNSG-AFPAPIEK-SISKPEGTP-----RGPQVYTMAPPKE-EMTQSQVSITCMVKGFYPPDIYTEWKMNG  163 (239)
T ss_dssp             T-TCCEEEEEECS-SSSSCEEE-EECCCSSCC-----BCCEEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             C-CCeEEEEEecc-cCCCCcEE-EEecCCCCC-----cCCEEEEECCChH-HhcCCcEEEEEEEeeeECCCeEEEEEECC
Confidence            9 99999999987 44321111 0011  222     5666655444332 345789999999998 454 479999999


Q ss_pred             cccccCCc--eE-Eecc------eEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        261 SPVEESDR--IQ-RIGS------SLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       261 ~~~~~~~~--~~-~~~~------~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      ..+.....  .. ..++      .|.|.....+|.|.|+|.|.|.....
T Consensus       164 ~~l~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~~  212 (239)
T 1i1c_A          164 QPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLEN  212 (239)
T ss_dssp             EECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred             EECCCceecCceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCCCC
Confidence            87754321  11 1222      34555555567999999999987654

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.70  E-value=6e-16  Score=124.22  Aligned_cols=163  Identities=15%  Similarity=0.224  Sum_probs=105.4

Q ss_pred             EEEeccCcEEEEEEecCCC-CCCeeEEEeCC-----EEEe---------------eC----------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPKR-LSSAKAWLKDG-----LVLR---------------RN----------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~-----~~~~---------------~~----------~~~~l~i~~~~~~   69 (371)
                      +.+.+|++++|.|.+.... ....+.|+|..     ..+.               ..          ...+|.|.+++.+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (223)
T 1dee_B           10 GVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAE   89 (223)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCHH
Confidence            7899999999999765332 24679999842     1110               00          2468999999999


Q ss_pred             CCeEEEEEEEcCCC---C---eEEEEEEEEec---ceeeEec-CCceeeecCCcEEEEEEecCC-CCCceEEEee-CCEE
Q psy14542         70 DAGMYQCHVSADDD---S---AQMSAQVILGG---ELVEIAS-SNQVVVDVGHRIELHCRVSPK-RLSSAKAWLK-DGLV  137 (371)
Q Consensus        70 d~G~Y~C~~~~~~~---~---~~~~~~l~v~~---~~~~~~~-~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~-~~~~  137 (371)
                      |+|.|.|.+.+..+   .   ....+.|.|..   .+|.+.. .+...+..|+.++|.|.+.+. |.+..+.|++ ++..
T Consensus        90 D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~  169 (223)
T 1dee_B           90 DTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKNNSD  169 (223)
T ss_dssp             GCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETTSCB
T ss_pred             HCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccCCCc
Confidence            99999999987642   1   11234677763   2333332 222234689999999999887 5434999999 8876


Q ss_pred             eeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeec--CCccceeEEEeecccccee
Q psy14542        138 LRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDE--SDRYRSYQCRGVNKLTGAS  202 (371)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~--~d~~g~y~C~~~~~~~~~~  202 (371)
                      +...    ......  ...|         .+..  .+.|.|.....  +| .|.|+|.+.|. .+..
T Consensus       170 l~~~----~~~~~~--~~~~---------~~~~--~s~L~i~~~~~~~~d-~g~y~C~v~n~-~~~~  217 (223)
T 1dee_B          170 ISST----RGFPSV--LRGG---------KYAA--TSQVLLPSKDVAQGT-NEHVVCKVQHP-NGNK  217 (223)
T ss_dssp             CSCE----EECCCE--EETT---------EEEE--EEEEEEECTTTTSTT-CCEEEEEEECT-TCCE
T ss_pred             ccee----EECCcc--ccCC---------eEEE--EEEEEEcHHHhccCC-CCEEEEEEEeC-CCCC
Confidence            6430    000000  0113         3322  25688877765  67 89999999998 5443

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.70  E-value=5.6e-16  Score=126.00  Aligned_cols=181  Identities=14%  Similarity=0.202  Sum_probs=107.9

Q ss_pred             eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec----cceEEEEEe
Q psy14542        106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS----SGELIIHQV  181 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~----~~~l~i~~~  181 (371)
                      ..+.+|+.++|.|.+.+ +. ..+.|+|....  ......+...+     ..........+++.+..    +..|.|.++
T Consensus        12 v~v~~G~~v~L~C~~~~-~~-~~v~W~k~~~~--~~~~~~~~~~~-----~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v   82 (240)
T 3q5y_A           12 IIKEKGGRSVLTCIPIS-GH-SNVVWYQQTLG--KELKFLIQHYE-----KVERDKGFLPSRFSVQQFDDYHSEMNMSAL   82 (240)
T ss_dssp             EEEETTCCEEEEEECCT-TC-CEEEEEEECTT--SCCEEEEEEET-----TEEEEECSCCTTEEEEECTTSCEEEEECSC
T ss_pred             eeecCCCcEEEEEEeCC-CC-ceEEEEEECCC--CCCEEEEEEcC-----CccccCcccCCeEEEEeCCCCEEEEEECcC
Confidence            34589999999999876 44 69999983210  00011111110     00000000112333332    357999999


Q ss_pred             ecCCccceeEEEeecc--ccceeeeeeccceeeeecc-hhccccceeeee-eeeeeeecCCeEEEEEEeec-CCCC-ceE
Q psy14542        182 DESDRYRSYQCRGVNK--LTGASLLSVNRGRLSLTEN-KRLLSAAKMFEK-HRILNVKKDESVILPCSAQG-NPLP-TIK  255 (371)
Q Consensus       182 ~~~d~~g~y~C~~~~~--~~~~~~~~~~~~~l~v~~~-~~~~~p~~~~~~-~~~~~~~~g~~~~l~C~~~~-~p~~-~v~  255 (371)
                      +.+| +|.|.|.+.+.  .........   .+.|... ....+|.+.... .... +..|+.+.|.|.+.+ .|.+ .+.
T Consensus        83 ~~~D-~G~Y~C~~~~~~~~~~~~~~~~---~l~V~~~~~~~~~p~~~~~~~~~~~-~~~g~~v~L~C~~~g~~P~~~~v~  157 (240)
T 3q5y_A           83 ELED-SAMYFCASSLRWGDEQYFGPGT---RLTVLEDLRNVTPPKVSLFEPSKAE-IANKQKATLVCLARGFFPDHVELS  157 (240)
T ss_dssp             CGGG-CEEEEEEEESSTTBCCEECCCE---EEEEESCGGGCBCCEEEEECCCHHH-HHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred             ChhH-CEEEEEEEccCCCcceEEcCCE---EEEEeccccCCCCCeeEEeCCchhh-cccCCceEEEEEEeeEECCCeEEE
Confidence            9999 99999999732  111222222   5555521 111344444322 2223 567899999999988 5656 799


Q ss_pred             EEeCCcccccCCce-----EEec------ceEEEeccCCCC-CeEEEEEEEcCCCCc
Q psy14542        256 WYKQDSPVEESDRI-----QRIG------SSLSISHVEESD-SGVWNCVANNSEGQD  300 (371)
Q Consensus       256 W~~~~~~~~~~~~~-----~~~~------~~l~i~~~~~~d-~G~Y~C~a~n~~g~~  300 (371)
                      |+++|..+....+.     ...+      +.|.|.....+| +|.|+|.|.|.....
T Consensus       158 W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~~  214 (240)
T 3q5y_A          158 WWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSE  214 (240)
T ss_dssp             EEETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             EEECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCC
Confidence            99999887654221     1112      348888888888 779999999876654

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.69  E-value=7.4e-16  Score=123.50  Aligned_cols=165  Identities=16%  Similarity=0.250  Sum_probs=105.3

Q ss_pred             CCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeCC--E---EEe-----------------eC----------CeeEEEE
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--L---VLR-----------------RN----------SDEVLVL   63 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~--~---~~~-----------------~~----------~~~~l~i   63 (371)
                      |.. +.+.+|++++|.|.+.... ..+.+.|+|++  .   .+.                 ..          ...+|.|
T Consensus         7 p~~-~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   85 (220)
T 1pz5_B            7 SGG-GLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQM   85 (220)
T ss_dssp             ECC-EEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred             cCC-EEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEE
Confidence            444 7899999999999765321 25789999842  1   110                 00          2348999


Q ss_pred             ccCCcCCCeEEEEEEEcCCCCe-E--EEEEEEEec---ceeeEec-CCceeeecCCcEEEEEEecCC-CCCceEEEeeCC
Q psy14542         64 DRVQREDAGMYQCHVSADDDSA-Q--MSAQVILGG---ELVEIAS-SNQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDG  135 (371)
Q Consensus        64 ~~~~~~d~G~Y~C~~~~~~~~~-~--~~~~l~v~~---~~~~~~~-~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~  135 (371)
                      .+++.+|+|.|.|.+.+..+.. .  ....|.|..   .+|.+.. .+...+.+|+.++|.|.+.+. |.+..+.|++++
T Consensus        86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~  165 (220)
T 1pz5_B           86 NNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGA  165 (220)
T ss_dssp             CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             ccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecCC
Confidence            9999999999999999865322 1  335666652   2333332 222334689999999999987 652399999987


Q ss_pred             EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceee
Q psy14542        136 LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASL  203 (371)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~  203 (371)
                      ......     ...... .. |.|         ..  .+.|.|.+... | .|.|+|.|.|. .+...
T Consensus       166 ~~~~~~-----~~~~~~-~~-~~~---------~~--~s~L~i~~~~~-~-~g~Y~C~a~n~-~~~~~  212 (220)
T 1pz5_B          166 LSSGVR-----TVSSVL-QS-GFY---------SL--SSLVTVPSSTW-P-SQTVICNVAHP-ASKVD  212 (220)
T ss_dssp             CCTTEE-----ECCCEE-ET-TEE---------EE--EEEEEECGGGT-T-TSCCEEEEEEG-GGTEE
T ss_pred             cccceE-----EcCCcc-cC-CeE---------EE--EEEEEEcchhc-C-CceEEEEEEEC-CccEe
Confidence            631000     000000 01 222         21  26788887776 6 59999999998 55433

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.69  E-value=7.4e-16  Score=123.03  Aligned_cols=174  Identities=14%  Similarity=0.185  Sum_probs=120.0

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEEEE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQCHV   78 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~   78 (371)
                      +|.+ ..|.. +.+.+|+.+.|.|. ..+.|.+.+.|+|+|..+...           ....|.|.+++.+|+|.|+|.+
T Consensus        19 ~P~~-~~p~~-~~~~~G~~v~l~C~-~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a   95 (215)
T 3mtr_A           19 APKL-QGPVA-VYTWEGNQVNITCE-VFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTA   95 (215)
T ss_dssp             EEEE-ECCSE-EEECTTCCEEEEEE-EEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEE
T ss_pred             CCcc-cCCce-EEEECCCCEEEEEE-EeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEE
Confidence            4556 56666 89999999999995 456778899999999887654           3578999999999999999999


Q ss_pred             EcCCCCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCC---CCCc--eEEEeeCCEEeeeCCeeEEEEcccCc
Q psy14542         79 SADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPK---RLSS--AKAWLKDGLVLRRNSDEVLVLDRVQR  153 (371)
Q Consensus        79 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~---~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~  153 (371)
                      .|..|.....+.|.|.. +|........ ...+..+.|.|.....   .+..  .+.|.+++...-..    ... .   
T Consensus        96 ~n~~g~~~~~~~l~v~~-~P~~p~~~~~-~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~----~~~-~---  165 (215)
T 3mtr_A           96 VNRIGQESLEFILVQAD-TPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHS----KWY-D---  165 (215)
T ss_dssp             ECSSCEEEEEEEEEECC-CCCCCEEEEE-EEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEE----EEE-E---
T ss_pred             EECCCceEEEEEEEECC-CCCCCcceEE-EEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccc----ccc-c---
Confidence            99999888888888873 3322111111 1457788999985332   1212  47777765421100    000 0   


Q ss_pred             CCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542        154 EDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT  214 (371)
Q Consensus       154 ~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~  214 (371)
                                   .........+.|.++...+ .|.|+|.|.|. .|....+.   .+.+.
T Consensus       166 -------------~~~~~~~~~l~i~~L~~~~-~y~~~~~A~N~-~G~s~~S~---~~~v~  208 (215)
T 3mtr_A          166 -------------AKEASMEGIVTIVGLKPET-TYAVRLAALNG-KGLGEISA---ASEFK  208 (215)
T ss_dssp             -------------HHHHHHHTEEEEECCCTTC-EEEEEEEEEES-SCBCCCCC---CEEEE
T ss_pred             -------------cccccccccEEECCCCCCC-EEEEEEEEEeC-CcccCccc---ceeeE
Confidence                         0000011579999999999 99999999999 77666555   55554

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.69  E-value=7.5e-17  Score=111.38  Aligned_cols=90  Identities=18%  Similarity=0.344  Sum_probs=76.3

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCC--ceEEe----cceEEEeccCCCCCeEEEEEE
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD--RIQRI----GSSLSISHVEESDSGVWNCVA  293 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~----~~~l~i~~~~~~d~G~Y~C~a  293 (371)
                      .||.+...+.... +.+|+.+.|.|.+.|.|.|.+.|+++|..+....  ++...    ..+|.|.++..+|+|.|+|.|
T Consensus         4 ~PP~i~~~p~~~~-v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   82 (100)
T 3knb_A            4 IPPKIEALPSDIS-IDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSL   82 (100)
T ss_dssp             EEEEECCCCSEEE-EETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCEEEeCCCcEE-EeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEE
Confidence            5677777777776 9999999999999999999999999999886553  34321    247999999999999999999


Q ss_pred             EcCCCCceeEEEEEEec
Q psy14542        294 NNSEGQDKMQLFIQYAH  310 (371)
Q Consensus       294 ~n~~g~~~~~~~l~v~~  310 (371)
                      .|..|..+.++.|.|..
T Consensus        83 ~N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           83 GNEFGSDSATVNIHIRS   99 (100)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCCEEEEEEEEEEEE
Confidence            99999999999998863

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.69  E-value=5e-16  Score=127.77  Aligned_cols=180  Identities=19%  Similarity=0.263  Sum_probs=103.2

Q ss_pred             eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCcee----EeccceEEEEEe
Q psy14542        106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYH----MLSSGELIIHQV  181 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~----~~~~~~l~i~~~  181 (371)
                      ..+.+|++++|.|.+.+.+. +.+.|++....  ...........  ......+.....+.+..    ......|.|.++
T Consensus        12 ~~v~~G~~v~L~C~~~~~~~-~~v~W~r~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   86 (259)
T 3omz_A           12 VIRQTGSSAEITCDLAEGST-GYIHWYLHQEG--KAPQRLLYYDS--YTSSVVLESGISPGKYDTYGSTRKNLRMILRNL   86 (259)
T ss_dssp             EEEETTCCEEEECCC------CEEEEEEECTT--SCCEEEEEEET--TTCCEEECTTCCBTTEEEECC--CCCEEEESSC
T ss_pred             eEecCCCcEEEEEEEccCCC-cEEEEEEECCC--CCcEEEEEEec--CcCccccCCCCCcceeEeecCCCCeEEEEECCC
Confidence            44589999999999988776 89999983210  00000111110  00000000000000111    112357999999


Q ss_pred             ecCCccceeEEEeeccccc---eeeeeeccceeeeecchhcc------------ccceeeeeeeeeeeecCCeEEEEEEe
Q psy14542        182 DESDRYRSYQCRGVNKLTG---ASLLSVNRGRLSLTENKRLL------------SAAKMFEKHRILNVKKDESVILPCSA  246 (371)
Q Consensus       182 ~~~d~~g~y~C~~~~~~~~---~~~~~~~~~~l~v~~~~~~~------------~p~~~~~~~~~~~~~~g~~~~l~C~~  246 (371)
                      +.+| +|.|.|.+.+. .+   ......   .|.|.......            .+.+...+.... +.+|++++|.|.+
T Consensus        87 ~~~D-sG~Y~C~~~~~-~~~~~~~~~~~---~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~-v~~G~~v~L~C~~  160 (259)
T 3omz_A           87 IEND-SGVYYCATWDQ-NYYKKLFGSGT---SLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVS-MPVRKAVTLNCLY  160 (259)
T ss_dssp             CGGG-CEEEEEEEECT-TSSCEEECCCE---EEEEEC------------------CEEECCCCCEE-EETTCCEEECCEE
T ss_pred             Cccc-CEEEEEEEeeC-CccccEECCCC---EEEEecCCCCccccccccccccCCeeeEEeCCEEE-EcCCCCEEEEEEC
Confidence            9999 99999999986 43   222222   56666421111            234455555555 8999999999998


Q ss_pred             ecC-CCCceEEEeCCc--ccc------------cCCceEEe------cceEEEeccCCCCCeEEEEEEEcC
Q psy14542        247 QGN-PLPTIKWYKQDS--PVE------------ESDRIQRI------GSSLSISHVEESDSGVWNCVANNS  296 (371)
Q Consensus       247 ~~~-p~~~v~W~~~~~--~~~------------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~a~n~  296 (371)
                      .+. +.+.+.|++.+.  .+.            ...++...      ...|.|.++..+|+|.|.|.+.+.
T Consensus       161 ~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  231 (259)
T 3omz_A          161 ETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGES  231 (259)
T ss_dssp             ECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred             CCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence            874 778999998542  110            11333322      246999999999999999999854

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.69  E-value=7.9e-16  Score=125.52  Aligned_cols=180  Identities=14%  Similarity=0.186  Sum_probs=106.7

Q ss_pred             eeeecCCcEEEEEEecCCCCCceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEe-CCceeEec----cceEEE
Q psy14542        106 VVVDVGHRIELHCRVSPKRLSSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIE-DGKYHMLS----SGELII  178 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~-~~~~~~~~----~~~l~i  178 (371)
                      ..+.+|++++|.| ..+.+. ..+.|+|.  +....    ..+...+     ...+..... ++++.+..    +..|.|
T Consensus        12 v~v~~G~~v~L~C-~~~~~~-~~v~W~r~~~~~~~~----~~~~~~~-----~~~~~~~~~~~~r~~~~~~~~~~~sL~I   80 (245)
T 4ei6_B           12 QIIDMGQMVTLNC-DPVSNH-LYFYWYKQILGQQME----FLVNFYN-----GKVMEKSKLFKDQFSVERPDGSYFTLKI   80 (245)
T ss_dssp             EEEETTCCEEEEE-ECCTTC-CEEEEEEEETTTEEE----EEEEEET-----TEEEEECTTCCTTEEEECCTTSCEEEEE
T ss_pred             EEecCCCCEEEEE-EcCCCC-CEEEEEEECCCCCcE----EEEEECC-----CceeccCCCccCCEEEEeccCceEEEEE
Confidence            3458999999999 555555 79999982  11111    0000000     000000000 02333332    247999


Q ss_pred             EEeecCCccceeEEEeeccc---cceeeeeeccceeeeecch-hccccceeee-eeeeeeeecCCeEEEEEEeec-CCCC
Q psy14542        179 HQVDESDRYRSYQCRGVNKL---TGASLLSVNRGRLSLTENK-RLLSAAKMFE-KHRILNVKKDESVILPCSAQG-NPLP  252 (371)
Q Consensus       179 ~~~~~~d~~g~y~C~~~~~~---~~~~~~~~~~~~l~v~~~~-~~~~p~~~~~-~~~~~~~~~g~~~~l~C~~~~-~p~~  252 (371)
                      .+++.+| +|.|.|.+.+..   ........   .+.|.... ...+|.+... +.... +..|+.++|.|.+.+ .|.+
T Consensus        81 ~~v~~~D-~G~Y~C~~~~~~~~~~~~~~~~~---~l~V~~~~~~~~~p~~~~~~~~~~~-~~~g~~v~l~C~~~g~~p~~  155 (245)
T 4ei6_B           81 QPTALED-SAVYFCASSFWGAYAEQFFGPGT---RLTVLEDLKNVFPPEVAVFEPSEAE-ISHTQKATLVCLATGFYPDH  155 (245)
T ss_dssp             CSCCGGG-CEEEEEEEECSSTTCCCEECCCE---EEEEESCGGGCBCCEEEEECCCHHH-HHHHSEEEEEEEEEEEBSSC
T ss_pred             CCCCHhH-CEEEEEEEccCCCcceEEEcCCc---EEEEecccCCCCCceEEEeCCCccc-ccCCCceEEEEEEeeEeCCC
Confidence            9999999 999999998531   11222222   55555311 1124444332 22223 566999999999988 4545


Q ss_pred             -ceEEEeCCcccccCCce---------------EEecceEEEeccCCCC-CeEEEEEEEcCCCCce
Q psy14542        253 -TIKWYKQDSPVEESDRI---------------QRIGSSLSISHVEESD-SGVWNCVANNSEGQDK  301 (371)
Q Consensus       253 -~v~W~~~~~~~~~~~~~---------------~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~  301 (371)
                       .+.|+++|..+....+.               ....+.|.|.....+| +|.|+|.|.|......
T Consensus       156 ~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~~~  221 (245)
T 4ei6_B          156 VELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  221 (245)
T ss_dssp             EEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred             eEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCCCc
Confidence             89999999877653221               1112348888888888 9999999998765543

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.68  E-value=1.5e-15  Score=126.21  Aligned_cols=192  Identities=13%  Similarity=0.159  Sum_probs=112.8

Q ss_pred             CceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEc-c-----cCcCCCeeEEEEEeCCceeEecc---
Q psy14542        104 NQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLD-R-----VQREDAGMYQCHIEDGKYHMLSS---  173 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~-~-----~~~~~~g~y~~~~~~~~~~~~~~---  173 (371)
                      ....+.+|++++|.|.+.+.. ....+.|++.....  .....+... .     .....         .+++.+..+   
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~--~~~~~~~~~~~~~~~~~~~~~---------~~R~~~~~~~~~   76 (280)
T 3fku_X            8 GAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQ--GLEWLGGISPMFGTPNYAQKF---------QGRVTITADQST   76 (280)
T ss_dssp             CCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSS--CCCCCEEECTTTCCEEECGGG---------TTTCEEEEETTT
T ss_pred             CCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCC--CCEEEEEEeccCCccccCccc---------CCcEEEEEeCCC
Confidence            344558999999999997742 23789999843110  001111111 0     00001         123333322   


Q ss_pred             --ceEEEEEeecCCccceeEEEeeccc--------cceeeeeeccceeeeec-ch---------hccccceeeeeeeeee
Q psy14542        174 --GELIIHQVDESDRYRSYQCRGVNKL--------TGASLLSVNRGRLSLTE-NK---------RLLSAAKMFEKHRILN  233 (371)
Q Consensus       174 --~~l~i~~~~~~d~~g~y~C~~~~~~--------~~~~~~~~~~~~l~v~~-~~---------~~~~p~~~~~~~~~~~  233 (371)
                        ..|.|.+++.+| +|.|.|.+.+..        ........   .|.|.. ..         ...++.+...+. .. 
T Consensus        77 ~~~sL~I~~v~~~D-sG~Y~C~~~~~~~~~g~~~~~~~~~~~~---~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~-  150 (280)
T 3fku_X           77 RTAYMDLRSLRSED-TAVYYCARSPSYICSGGTCVFDHWGQGT---LVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VS-  150 (280)
T ss_dssp             TEEEEEECSCCSTT-CEECCEEECSSSSSSSTTCCCCEECCCC---EEEECC--------------CCCSBBCCSE-EE-
T ss_pred             CEEEEEECCCChhh-CEEEEEEEecCCccccccccccEECCCE---EEEEcCCCCccCCCCCCceEeeeEEEeCCc-EE-
Confidence              479999999999 999999998751        11122222   566653 00         002444444444 45 


Q ss_pred             eecCCeEEEEEEeec-CC-CCceEEEeC--Ccccc------------cCCceEEe----cceEEEeccCCCCCeEEEEEE
Q psy14542        234 VKKDESVILPCSAQG-NP-LPTIKWYKQ--DSPVE------------ESDRIQRI----GSSLSISHVEESDSGVWNCVA  293 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~-~p-~~~v~W~~~--~~~~~------------~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a  293 (371)
                      +.+|++++|.|.+.+ .+ .+.+.|++.  +..+.            ...++...    ...|.|.++..+|+|.|.|.+
T Consensus       151 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~  230 (280)
T 3fku_X          151 KGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCST  230 (280)
T ss_dssp             ECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEE
T ss_pred             EecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEE
Confidence            999999999999987 43 378999973  22221            12333321    125999999999999999999


Q ss_pred             EcCCCC---ceeEEEEEEecCc
Q psy14542        294 NNSEGQ---DKMQLFIQYAHGK  312 (371)
Q Consensus       294 ~n~~g~---~~~~~~l~v~~~p  312 (371)
                      .|..+.   ......|.|...+
T Consensus       231 ~~~~~~~~~~g~~t~l~V~~~~  252 (280)
T 3fku_X          231 WDSSLSAVVFGGGTKLTVLGQP  252 (280)
T ss_dssp             EETTTTEEEEBCCCEEEEC---
T ss_pred             ecCCCCceEECCCEEEEECCCC
Confidence            987632   1223456665433

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.68  E-value=1.1e-15  Score=126.47  Aligned_cols=173  Identities=16%  Similarity=0.262  Sum_probs=103.7

Q ss_pred             eeeecCCcEEEEEEecCCCC----CceEEEeeCCEEeeeCCeeEEEEcc--cCcCCCeeEEEEEeCCceeEe---ccceE
Q psy14542        106 VVVDVGHRIELHCRVSPKRL----SSAKAWLKDGLVLRRNSDEVLVLDR--VQREDAGMYQCHIEDGKYHML---SSGEL  176 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~g~y~~~~~~~~~~~~---~~~~l  176 (371)
                      ..+.+|++++|.|.+.+.+.    ...+.|++.....  .... +....  ......+         ++.+.   ....|
T Consensus        25 ~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~--~~~~-l~~~~~~~~~~~~~---------r~~~~~~~~~~~L   92 (268)
T 1x9q_A           25 LPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQ--SPKV-LIYKVSNRVSGVPD---------RFSGSGSGTDFTL   92 (268)
T ss_dssp             ECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTS--CCEE-EEETTTEECTTSCT---------TEEEEEETTEEEE
T ss_pred             EEecCCCCEEEEeEecCCcccccCCceEEEEEECCCC--CCEE-EEEecCCCCCCCcc---------cEEEEcCCCEEEE
Confidence            34489999999999987762    3789999853100  0000 11000  0000112         33222   12479


Q ss_pred             EEEEeecCCccceeEEEeeccccce-eeeeeccceeeeecchhcc----cc--------------ceeeeeeeeeeeecC
Q psy14542        177 IIHQVDESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKRLL----SA--------------AKMFEKHRILNVKKD  237 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~~~----~p--------------~~~~~~~~~~~~~~g  237 (371)
                      .|.+++.+| +|.|.|.+.+. .+. .....   .|.|.......    +|              .....+.... +.+|
T Consensus        93 ~I~~v~~~D-sG~Y~C~~~~~-~~~~~~~~~---~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~-v~~G  166 (268)
T 1x9q_A           93 KINRVEAED-LGVYFCSQSTH-VPWTFGGGT---KLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGL-VQPG  166 (268)
T ss_dssp             EESSCCGGG-CEEEEEEECSS-SSCEECCCE---EEC------------------------CGGGCEEEEECCEE-ECTT
T ss_pred             EECCCChhH-CEEEEEEEecC-CCceEcCCE---EEEEccCccCCCccccccccccccccccccceEEECCCceE-ecCC
Confidence            999999999 99999999886 332 22222   55555322101    11              1122233444 8999


Q ss_pred             CeEEEEEEeecCCC--CceEEEeCC--ccc-------------------ccCCceEEe------cceEEEeccCCCCCeE
Q psy14542        238 ESVILPCSAQGNPL--PTIKWYKQD--SPV-------------------EESDRIQRI------GSSLSISHVEESDSGV  288 (371)
Q Consensus       238 ~~~~l~C~~~~~p~--~~v~W~~~~--~~~-------------------~~~~~~~~~------~~~l~i~~~~~~d~G~  288 (371)
                      +.++|.|.+.+.+.  +.+.|+++.  ..+                   ....++...      ..+|.|.++..+|+|.
T Consensus       167 ~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~  246 (268)
T 1x9q_A          167 GAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGI  246 (268)
T ss_dssp             CCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEE
T ss_pred             CcEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEE
Confidence            99999999998764  789999853  221                   112344422      2479999999999999


Q ss_pred             EEEEEEcC
Q psy14542        289 WNCVANNS  296 (371)
Q Consensus       289 Y~C~a~n~  296 (371)
                      |.|.+.+.
T Consensus       247 Y~C~a~~~  254 (268)
T 1x9q_A          247 YYCTGASY  254 (268)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEccC
Confidence            99999874

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.68  E-value=4.2e-16  Score=129.64  Aligned_cols=175  Identities=13%  Similarity=0.202  Sum_probs=111.5

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC--E---EEe---------------e---------CCeeE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG--L---VLR---------------R---------NSDEV   60 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~--~---~~~---------------~---------~~~~~   60 (371)
                      .+.+...|.. +.+.+|++++|.|.+ .+.+.+.+.|+|++  .   .+.               .         ....+
T Consensus        24 ~~~v~~~p~~-v~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~s  101 (279)
T 2wbj_D           24 GAVVSQHPSW-VISKSGTSVKIECRS-LDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLST  101 (279)
T ss_dssp             CCCEEEECSE-EEEETTSCEEEEEEE-SSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEE
T ss_pred             cceEEeCCCe-EEecCCCeEEEEEEe-CCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEE
Confidence            4667777777 899999999999966 45567889999853  1   110               0         03458


Q ss_pred             EEEccCCcCCCeEEEEEEEcCCC----Ce--EEEEEEEEec-----ceeeEecCC-c-eeeecCCcEEEEEEecCCCC-C
Q psy14542         61 LVLDRVQREDAGMYQCHVSADDD----SA--QMSAQVILGG-----ELVEIASSN-Q-VVVDVGHRIELHCRVSPKRL-S  126 (371)
Q Consensus        61 l~i~~~~~~d~G~Y~C~~~~~~~----~~--~~~~~l~v~~-----~~~~~~~~~-~-~~~~~g~~v~l~C~~~~~~~-~  126 (371)
                      |.|.+++.+|+|.|.|.+.+..+    ..  .....|.|..     .+|.+.... . ..+..|+.++|.|.+.+.++ .
T Consensus       102 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~  181 (279)
T 2wbj_D          102 LTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH  181 (279)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSC
T ss_pred             EEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCC
Confidence            99999999999999999998421    11  1234566653     234333221 1 12246899999999988644 3


Q ss_pred             ceEEEeeCCEEeeeCCeeE-EEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        127 SAKAWLKDGLVLRRNSDEV-LVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       127 ~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      +.++|++++..+....... ...........|.|.         ..  +.|.|......|+.|.|+|.+.|.
T Consensus       182 ~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~--s~L~i~~~~~~d~~~~YtC~v~n~  242 (279)
T 2wbj_D          182 VELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYS---------LS--SRLRVSATFWQNPRNHFRCQVQFY  242 (279)
T ss_dssp             EEEEEEETTEECCTTEEECSSCEESSTTSTTCCEE---------EE--EEEECCSTTTTCTTCEEEEEEEEC
T ss_pred             cEEEEEECCEECCCCcccccccccccccCCCCcEE---------EE--EEEEEChHHhccCCCEEEEEEEeC
Confidence            6999999998876432100 000001112333332         21  467777766654267899999987

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.68  E-value=3.2e-15  Score=125.03  Aligned_cols=169  Identities=17%  Similarity=0.299  Sum_probs=106.5

Q ss_pred             eCCCcEEEeccCcEEEEEEecCCCC--CCeeEEEeCC-----EEEe---------------eC----------CeeEEEE
Q psy14542         16 SPSGQVVVDVGHRIELHCRVSPKRL--SSAKAWLKDG-----LVLR---------------RN----------SDEVLVL   63 (371)
Q Consensus        16 ~p~~~~~~~~G~~v~l~C~~~~~~~--~~~~~W~~~~-----~~~~---------------~~----------~~~~l~i   63 (371)
                      .|.. +.+.+|++++|.|.+. +.+  .+.+.|+|+.     ..+.               ..          ...+|.|
T Consensus        28 ~p~~-~~v~~G~~v~L~C~~~-~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I  105 (291)
T 2gki_A           28 QSGP-ELVKPGASVKMSCKAS-GYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMEL  105 (291)
T ss_dssp             ECCC-EEECTTCCEEEEEEEE-SSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEE
T ss_pred             cCCc-EEecCCCCEEEEEecc-CCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEE
Confidence            4555 8999999999999754 333  4679999842     1110               00          2468999


Q ss_pred             ccCCcCCCeEEEEEEEcCC-CCeE----EEEEEEEecc---------------eeeEecCCc-eeeecCCcEEEEEEecC
Q psy14542         64 DRVQREDAGMYQCHVSADD-DSAQ----MSAQVILGGE---------------LVEIASSNQ-VVVDVGHRIELHCRVSP  122 (371)
Q Consensus        64 ~~~~~~d~G~Y~C~~~~~~-~~~~----~~~~l~v~~~---------------~~~~~~~~~-~~~~~g~~v~l~C~~~~  122 (371)
                      .+++.+|+|.|.|.+.+.. +...    ....|.|...               ++.+...+. ..+.+|++++|.|.+.+
T Consensus       106 ~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~  185 (291)
T 2gki_A          106 SSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQ  185 (291)
T ss_dssp             CSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESS
T ss_pred             CcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCC
Confidence            9999999999999999764 2111    2346777631               233444443 34589999999999988


Q ss_pred             CCCC-----ceEEEeeCC--EEeeeCCeeEEEEccc-CcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEe
Q psy14542        123 KRLS-----SAKAWLKDG--LVLRRNSDEVLVLDRV-QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRG  194 (371)
Q Consensus       123 ~~~~-----~~v~W~~~~--~~~~~~~~~~~~~~~~-~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~  194 (371)
                      .+.+     +.+.|+|+.  ..+.    ........ .....+.|.....      .....|.|.+++.+| +|.|+|.+
T Consensus       186 ~~~~~~~~~~~v~W~k~~~g~~~~----~l~~~~~~~~~~~~~r~~~~~~------~~~~~L~I~~v~~~D-sG~Y~C~a  254 (291)
T 2gki_A          186 SLFNSRTRKNYLAWYQQKPGQSPK----LLIYWASTRESGVPDRFTGSGS------GTDFTLTISSVQAED-LAVYYCKQ  254 (291)
T ss_dssp             CCEETTTTEECEEEEEECTTSCCE----EEEETTTEECTTCCTTEEEEEE------TTEEEEEESSCCGGG-CEEEEEEE
T ss_pred             ccccccccceeEEEEEECCCCCcE----EEEEEcccCCCCcCCCEEEEec------CCEEEEEECCCCHHH-CEEEEEEE
Confidence            7762     289999963  2110    00000000 0000111211100      112479999999999 99999999


Q ss_pred             ecc
Q psy14542        195 VNK  197 (371)
Q Consensus       195 ~~~  197 (371)
                      .+.
T Consensus       255 ~~~  257 (291)
T 2gki_A          255 SYY  257 (291)
T ss_dssp             EET
T ss_pred             ccC
Confidence            875

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.67  E-value=1.5e-16  Score=128.31  Aligned_cols=168  Identities=17%  Similarity=0.180  Sum_probs=106.8

Q ss_pred             eecCCcEEEEEEecCC-CC-CceEEEeeCCEEe-eeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542        108 VDVGHRIELHCRVSPK-RL-SSAKAWLKDGLVL-RRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES  184 (371)
Q Consensus       108 ~~~g~~v~l~C~~~~~-~~-~~~v~W~~~~~~~-~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~  184 (371)
                      +..|+.++|.|.+.+. |. +..++|+++|..+ ..... ...     ....|         .+.  ..+.|.|.++..+
T Consensus        25 v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~-~~~-----~~~~g---------~~~--~~s~L~I~~~~~~   87 (231)
T 2w59_A           25 LYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPM-VLQ-----EHFNG---------TYS--ASSAVPVSTQDWL   87 (231)
T ss_dssp             HHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCC-EEE-----ECTTS---------CEE--EEEEEECCHHHHH
T ss_pred             cccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccc-cce-----ECCCC---------cEE--EEEEEEecchhcc
Confidence            3689999999999885 42 2599999988766 22111 000     11222         222  2367999999999


Q ss_pred             CccceeEEEeeccccceeeeeeccceeeeecch-hccccceeeeeeeeeeeecCCeEEEEEEeecC-C-CCceEEEeCCc
Q psy14542        185 DRYRSYQCRGVNKLTGASLLSVNRGRLSLTENK-RLLSAAKMFEKHRILNVKKDESVILPCSAQGN-P-LPTIKWYKQDS  261 (371)
Q Consensus       185 d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~-~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~v~W~~~~~  261 (371)
                      | .|.|+|.+.+. .+...  .   .+.|.... ...+|.+........ ...++.++|.|.+.|. | .+.|.|+++|.
T Consensus        88 D-~g~Y~C~~~~~-~~~~~--~---~~~v~~~~~~~~~P~v~v~~~~~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~  159 (231)
T 2w59_A           88 S-GERFTCTVQHE-ELPLP--L---SKSVYRNTGPTTPPLIYPFAPHPE-ELSLSRVTLSCLVRGFRPRDIEIRWLRDHR  159 (231)
T ss_dssp             T-TCCEEEEEECT-TCSSC--E---EEEECCCCSCCBCCEEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             C-CCEEEEEEEcC-CCCCc--e---EEEEecCCCCCcCCEEEEeCCCHH-HhccCceEEEEEEEeccCCCcEEEEEECCE
Confidence            9 99999999987 43221  1   33332110 113454443322212 2235679999999985 4 36899999998


Q ss_pred             ccccCCce----EE---------ec-------ceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        262 PVEESDRI----QR---------IG-------SSLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       262 ~~~~~~~~----~~---------~~-------~~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      .+......    ..         .+       +.|.|.....+|.|.|+|+|.|.....
T Consensus       160 ~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~~  218 (231)
T 2w59_A          160 AVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALPM  218 (231)
T ss_dssp             ECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTSTT
T ss_pred             ECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCCC
Confidence            87654311    11         12       357788888889999999999987653

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.67  E-value=5e-16  Score=127.03  Aligned_cols=191  Identities=14%  Similarity=0.180  Sum_probs=97.5

Q ss_pred             CceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEE
Q psy14542        104 NQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELI  177 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~  177 (371)
                      +...+.+|++++|.|.+.+.+ ....+.|++....  ......+.+....  ....| .....+++.+..     +..|.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g--~~~~~l~~~~~~~--~~~~~-~~~~~~R~~~~~~~~~~~~sL~   82 (257)
T 3bn9_D            8 GGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPG--KGLEWVSAISGSG--GSTYY-ADSVKGRFTISRDNSKNTLYLQ   82 (257)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTT--SCEEEEEEECSSS--CCEEE-CGGGTTTEEEEEETTTTEEEEE
T ss_pred             CCEEEcCCCcEEEEEEeccccCCCceEEEEEECCC--CCeEEEEEEecCC--Cceec-CcccCCceEEEecCCCCEEEEE
Confidence            344568999999999998764 1378999985310  0001111111000  00000 000022333332     25799


Q ss_pred             EEEeecCCccceeEEEeeccccc----------eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEee
Q psy14542        178 IHQVDESDRYRSYQCRGVNKLTG----------ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQ  247 (371)
Q Consensus       178 i~~~~~~d~~g~y~C~~~~~~~~----------~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~  247 (371)
                      |.+++.+| +|.|.|.+.+. .+          ..........|.|.... ..+|.+........ +..|+.++|.|.+.
T Consensus        83 I~~v~~~D-sG~Y~C~~~~~-~g~~~~~~~~~~~~~~~~~~t~L~V~~~~-~~~P~v~~~~p~~~-~~~g~~v~L~C~~~  158 (257)
T 3bn9_D           83 MSSLRAED-TAVYYCARPYL-TYPQRRGPQNVSPFDNWGQGTMVTVSSAS-TKGPSVFPLAPSSK-STSGGTAALGCLVK  158 (257)
T ss_dssp             EESCCGGG-CEEEEEEEECC-SSTTSCCCCTTCCEEEECCCEEEEECSSC-CBCCEECCCCC------------CCCEEE
T ss_pred             ECCCChhh-CEEEEEEEecC-CCcccccccccceeeeeCCcEEEEecCCC-CcCCcEEEecCccc-ccCCCcEEEEEEEe
Confidence            99999999 99999999886 32          10011111256665311 13455443322223 66799999999999


Q ss_pred             cC-CCC-ceEEEeCCcccccC--Cce------EEecceEEEeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542        248 GN-PLP-TIKWYKQDSPVEES--DRI------QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL  304 (371)
Q Consensus       248 ~~-p~~-~v~W~~~~~~~~~~--~~~------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  304 (371)
                      +. |.+ .+.|++++..+...  ...      ....+.|.|..+..+| |.|+|.|.|.........
T Consensus       159 g~~P~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~~~~  224 (257)
T 3bn9_D          159 DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDK  224 (257)
T ss_dssp             EEBSSCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGTEEEEE
T ss_pred             eEECCCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCcCEEE
Confidence            85 776 89999998764211  111      1122457777777778 999999999766544333

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.67  E-value=2.4e-15  Score=123.22  Aligned_cols=184  Identities=15%  Similarity=0.250  Sum_probs=107.8

Q ss_pred             eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCC-ceeEeccce--EEEEEee
Q psy14542        106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDG-KYHMLSSGE--LIIHQVD  182 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~-~~~~~~~~~--l~i~~~~  182 (371)
                      ..+.+|++++|.|.+.+.+. ..+.|+|...  .......+.....     .........+ ++.+..+..  |.|.+++
T Consensus        11 v~v~~G~~v~L~C~~~~~~~-~~v~W~r~~~--~~~~~~~~~~~~~-----~~~~~~~~~~~R~~~~~~~~~~L~I~~v~   82 (253)
T 3to4_D           11 RLVPRGQAVNLRCILKNSQY-PWMSWYQQDL--QKQLQWLFTLRSP-----GDKEVKSLPGADYLATRVTDTELRLQVAN   82 (253)
T ss_dssp             EEEESSCCEEEEEECSCTTC-CCEEEEEEET--TCCEEEEEEECST-----TCEEEEEETTEEEEEECCSSSCCEEEEES
T ss_pred             EEEeCCCcEEEEEEeCCCCc-ceEEEEEECC--CCCcEEEEEECCC-----cceecCCccCCcEEEEeCCCCeEEEccCC
Confidence            34589999999999887766 8999998221  0000111111110     1111111122 444433222  9999999


Q ss_pred             cCCccceeEEEeeccccc---eeeeeeccceeeeecch-hccccceeeeeeeeeeeecCCeEEEEEEeec-CCCC-ceEE
Q psy14542        183 ESDRYRSYQCRGVNKLTG---ASLLSVNRGRLSLTENK-RLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLP-TIKW  256 (371)
Q Consensus       183 ~~d~~g~y~C~~~~~~~~---~~~~~~~~~~l~v~~~~-~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W  256 (371)
                      .+| +|.|.|.+.+. .+   ..........+.|.... ...+|.+.........+..|+.++|.|.+.+ .|.+ .+.|
T Consensus        83 ~~D-sG~Y~C~~~~~-~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W  160 (253)
T 3to4_D           83 MSQ-GRTLYCTSSAD-HWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW  160 (253)
T ss_dssp             CSS-CEEEEEEEECS-CCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             hhh-CeEEEEEEecC-CCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEE
Confidence            999 99999999865 22   11111111145554211 1134544433222111345789999999998 6666 8999


Q ss_pred             EeCCcccccCCce---------------EEecceEEEeccCCCC-CeEEEEEEEcCCCC
Q psy14542        257 YKQDSPVEESDRI---------------QRIGSSLSISHVEESD-SGVWNCVANNSEGQ  299 (371)
Q Consensus       257 ~~~~~~~~~~~~~---------------~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~  299 (371)
                      +++|..+......               ....+.|.|.....+| .|.|+|.|.|....
T Consensus       161 ~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l~  219 (253)
T 3to4_D          161 WVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  219 (253)
T ss_dssp             EETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             EECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCCC
Confidence            9999877543211               1122467888887777 78999999987544

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.67  E-value=1.3e-15  Score=123.82  Aligned_cols=191  Identities=17%  Similarity=0.210  Sum_probs=110.4

Q ss_pred             eeeecCCcEEEEEEecCC--CCCceEEEeeCC--EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe-----ccceE
Q psy14542        106 VVVDVGHRIELHCRVSPK--RLSSAKAWLKDG--LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML-----SSGEL  176 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~--~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~-----~~~~l  176 (371)
                      ..+.+|++++|.|.+.+.  +. ..+.|+|..  ..+    ...+......   ...|.....++++.+.     .+..|
T Consensus        11 v~~~~G~~v~L~C~~~~~~~~~-~~v~W~r~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~R~~~~~~~~~~~~~L   82 (242)
T 1hxm_B           11 STKTLSKTARLECVVSGITISA-TSVYWYRERPGEVI----QFLVSISYDG---TVRKESGIPSGKFEVDRIPETSTSTL   82 (242)
T ss_dssp             EEEETTCCEEEEEEEESSCTTT-SCEEEEEECTTSCC----EEEEEECSSS---CEEECTTCCTTSEEEEEETTTTEEEE
T ss_pred             EEecCCCcEEEEEEeCCccccC-ceEEEEEeCCCCCc----EEEEEEecCC---ceecCCcccCCeEEEEecCCCcEEEE
Confidence            345899999999999875  33 789999843  111    1111111100   0000000012343333     23579


Q ss_pred             EEEEeecCCccceeEEEeeccccce---eeeeeccceeeeecchhc--cccceeee-eeeeeeeecCCeEEEEEEeecC-
Q psy14542        177 IIHQVDESDRYRSYQCRGVNKLTGA---SLLSVNRGRLSLTENKRL--LSAAKMFE-KHRILNVKKDESVILPCSAQGN-  249 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~~~~~~~---~~~~~~~~~l~v~~~~~~--~~p~~~~~-~~~~~~~~~g~~~~l~C~~~~~-  249 (371)
                      .|.+++.+| +|.|.|.+.+...+.   .........|.|......  .+|..... +.... +..|+.++|.|.+.+. 
T Consensus        83 ~I~~v~~~D-~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~-~~~g~~v~L~C~~~g~~  160 (242)
T 1hxm_B           83 TIHNVEKQD-IATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAE-TKLQKAGTYLCLLEKFF  160 (242)
T ss_dssp             EECSCCGGG-CEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGG-GGSSSCEEEEEEEEEES
T ss_pred             EECCCCccc-CEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhh-cccCCCceEEEEEeeEE
Confidence            999999999 999999998761111   111111226666632110  02222221 22223 5679999999999885 


Q ss_pred             CC-CceEEEeCCc-ccccCC--ceE------EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        250 PL-PTIKWYKQDS-PVEESD--RIQ------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       250 p~-~~v~W~~~~~-~~~~~~--~~~------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      |. +.+.|++++. .+....  ...      ...+.|.|..... | |.|+|.|.|..+.......+.+
T Consensus       161 P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~  227 (242)
T 1hxm_B          161 PDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF  227 (242)
T ss_dssp             SCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred             CCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence            64 6899999987 553221  111      1224688877665 4 9999999999988765555555

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.67  E-value=4.6e-15  Score=119.75  Aligned_cols=167  Identities=13%  Similarity=0.193  Sum_probs=102.5

Q ss_pred             EEEeccCcEEEEEEecCCC-CCCeeEEEeCC-----EEEe--------------eC----------CeeEEEEccCCcCC
Q psy14542         21 VVVDVGHRIELHCRVSPKR-LSSAKAWLKDG-----LVLR--------------RN----------SDEVLVLDRVQRED   70 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~-----~~~~--------------~~----------~~~~l~i~~~~~~d   70 (371)
                      +.+.+|++++|.|.+.... ....+.|||..     ..+.              ..          ...+|.|.+++.+|
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   89 (232)
T 1dn0_B           10 GLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAAD   89 (232)
T ss_dssp             CEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCccc
Confidence            6899999999999765432 25679999832     1110              00          24589999999999


Q ss_pred             CeEEEEEEEcCCC--C----eEEEEEEEEec---ceeeEec-CCceeeecC-CcEEEEEEecCC-CCCceEEEee-CCEE
Q psy14542         71 AGMYQCHVSADDD--S----AQMSAQVILGG---ELVEIAS-SNQVVVDVG-HRIELHCRVSPK-RLSSAKAWLK-DGLV  137 (371)
Q Consensus        71 ~G~Y~C~~~~~~~--~----~~~~~~l~v~~---~~~~~~~-~~~~~~~~g-~~v~l~C~~~~~-~~~~~v~W~~-~~~~  137 (371)
                      +|.|.|.+.+..+  .    ......|.|..   .+|.+.. .+...+..| +.++|.|.+.+. |.+..+.|++ +|..
T Consensus        90 ~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~  169 (232)
T 1dn0_B           90 TAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSD  169 (232)
T ss_dssp             CEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCE
T ss_pred             CEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCCc
Confidence            9999999984211  1    11235777763   2233332 223333578 999999999886 5434999999 8877


Q ss_pred             eeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeec--CCccceeEEEeeccccceeeeee
Q psy14542        138 LRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDE--SDRYRSYQCRGVNKLTGASLLSV  206 (371)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~--~d~~g~y~C~~~~~~~~~~~~~~  206 (371)
                      +... .   ......  +.|.         +..  .+.|.|.....  +| .|.|+|.+.|. .+......
T Consensus       170 l~~~-~---~~~~~~--~~~~---------~~~--~s~L~i~~~~~~~~d-~g~ytC~v~n~-~~~~~~~~  221 (232)
T 1dn0_B          170 ISST-R---GFPSVL--RGGK---------YAA--TSQVLLPSKDVMAGT-DEHVVCKVQHP-NGNKEKNV  221 (232)
T ss_dssp             ECCE-E---ECCCEE--ETTE---------EEE--EEEEEECTTCC---C-CCEEEEEEECT-TCCEEEEE
T ss_pred             eeeE-E---ECCccc--cCCc---------EEE--EEEEEEcHHHhcccC-CCeEEEEEEeC-CCCcceeE
Confidence            6431 0   000000  1132         222  25788887776  77 99999999998 55544433

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.66  E-value=1.4e-15  Score=122.34  Aligned_cols=170  Identities=15%  Similarity=0.221  Sum_probs=102.1

Q ss_pred             EEEeccCcEEEEEEecCCC-CCCeeEEEeCC--EE---E---e------------eC----------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--LV---L---R------------RN----------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~--~~---~---~------------~~----------~~~~l~i~~~~~~   69 (371)
                      ..+.+|++++|.|.+.... ....+.|+|++  ..   +   .            ..          ...+|.|.+++.+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (227)
T 1mju_H           10 ELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSD   89 (227)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCCcc
Confidence            7899999999999665321 15779999842  11   1   0            00          3468999999999


Q ss_pred             CCeEEEEEEEcCCCCe-EEEEEEEEec---ceeeEec-CCceeeecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCe
Q psy14542         70 DAGMYQCHVSADDDSA-QMSAQVILGG---ELVEIAS-SNQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSD  143 (371)
Q Consensus        70 d~G~Y~C~~~~~~~~~-~~~~~l~v~~---~~~~~~~-~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~  143 (371)
                      |+|.|.|.+.+..... .....|.|..   .+|.+.. .+...+..|+.++|.|.+.+. |.+..+.|++++..+.....
T Consensus        90 D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~  169 (227)
T 1mju_H           90 DSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTF  169 (227)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEC
T ss_pred             cCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCcEEC
Confidence            9999999998753211 1234677763   2233332 233334679999999999876 54349999998875321100


Q ss_pred             eEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542        144 EVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT  214 (371)
Q Consensus       144 ~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~  214 (371)
                           .... .. |.|         ..  .+.|.|..+.. | .|.|+|.+.|. .+......   .+.+.
T Consensus       170 -----~~~~-~~-g~~---------~~--~s~L~i~~~~~-~-~g~Y~C~a~n~-~~~~~~~~---~~~~~  216 (227)
T 1mju_H          170 -----PAVL-QS-DLY---------TL--SSSVTVTSSTW-P-SQSITCNVAHP-ASSTKVDK---KIEPR  216 (227)
T ss_dssp             -----CCEE-ET-TEE---------EE--EEEEEECTTTT-T-TSCCEEEEEEG-GGTEEEEE---ECCCC
T ss_pred             -----Ccee-cC-CeE---------EE--EEEEEEchhhc-C-CCeEEEEEEEC-CCCcceEE---EeCCC
Confidence                 0000 01 222         11  25688877766 4 49999999997 44443333   44444

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.66  E-value=2.3e-15  Score=120.13  Aligned_cols=181  Identities=11%  Similarity=0.132  Sum_probs=107.5

Q ss_pred             ceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcc-----cCcCCCeeEEEEEeCCceeEec-----c
Q psy14542        105 QVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDR-----VQREDAGMYQCHIEDGKYHMLS-----S  173 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~-----~~~~~~g~y~~~~~~~~~~~~~-----~  173 (371)
                      ...+.+|++++|.|.+.+.+ ....+.|++.....  .....+....     ......+         ++.+..     +
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~--~~~~l~~~~~~~~~~~~~~~~~---------R~~~~~~~~~~~   77 (215)
T 1c5d_H            9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGK--GLEWIAAISSGGSPYYNSALKS---------RLSINRDTSKSQ   77 (215)
T ss_dssp             CCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTS--CCEEEEEECTTCCEECCTTTGG---------GEEEEEETTTTE
T ss_pred             CeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCC--CcEEEEEEcCCCCcEECCcccC---------cEEEEeeCCCce
Confidence            34558999999999998764 23789999853100  0011111111     0001112         333321     2


Q ss_pred             ceEEEEEeecCCccceeEEEeeccccce---eeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-
Q psy14542        174 GELIIHQVDESDRYRSYQCRGVNKLTGA---SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-  249 (371)
Q Consensus       174 ~~l~i~~~~~~d~~g~y~C~~~~~~~~~---~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-  249 (371)
                      ..|.|.+++.+| +|.|.|.+.+. .+.   .....   .|.|.... ..+|.+........ +..|+.++|.|.+.+. 
T Consensus        78 ~~L~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~~~---~L~V~~~~-~~~P~i~~~~~~~~-~~~g~~v~L~C~~~g~~  150 (215)
T 1c5d_H           78 VFLKMNSLQTED-TAIYFCTREDG-WNYFDYWGPGT---MVTVSSAQ-TTAPSVYPLAPGCG-DTTSSTVTLGCLVKGYF  150 (215)
T ss_dssp             EEEEESSCCGGG-CEEEEEEECCS-SSCSCCBCCCE---EEEECSSC-CBCCCEEEECCCSS-CCCCSSEEEEEEEEEEB
T ss_pred             EEEEECCCCccc-CEEEEEEEecC-CcccceEcCCE---EEEecCCC-CCCCeEEeccCChh-hccCCcEEEEEEEeeeE
Confidence            479999999999 99999999886 321   11122   56665321 13455544332333 6789999999999986 


Q ss_pred             CCC-ceEEEeCCcccccC-CceEEecceEE----EeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542        250 PLP-TIKWYKQDSPVEES-DRIQRIGSSLS----ISHVEESDSGVWNCVANNSEGQDKMQL  304 (371)
Q Consensus       250 p~~-~v~W~~~~~~~~~~-~~~~~~~~~l~----i~~~~~~d~G~Y~C~a~n~~g~~~~~~  304 (371)
                      |.+ .+.|++++..+... ......++.+.    +.....+| |.|+|.|.|..+......
T Consensus       151 P~p~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~~~  210 (215)
T 1c5d_H          151 PEPVTVTWNSGALSSDVHTFPAVLQSGLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKVDK  210 (215)
T ss_dssp             SSCCEEEEGGGTTCCSCCBCCCEEETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             cCCcEEEEccCCccCceEecCcccCCCCEEEEEEEecccCCC-CeEEEEEEeCCCCccEEE
Confidence            777 99999998754321 11111112211    22344456 999999999998765443

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.66  E-value=1.7e-15  Score=121.82  Aligned_cols=161  Identities=18%  Similarity=0.262  Sum_probs=103.0

Q ss_pred             CCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeCC--EE---Ee---------------eC----------CeeEEEEcc
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--LV---LR---------------RN----------SDEVLVLDR   65 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~--~~---~~---------------~~----------~~~~l~i~~   65 (371)
                      |.. +.+.+|++++|.|.+.... ..+.+.|+|+.  ..   +.               ..          ...+|.|.+
T Consensus         7 p~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (225)
T 1op3_H            7 SGG-GLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHK   85 (225)
T ss_dssp             ECC-EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CCC-eEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECC
Confidence            344 7899999999999665321 25779999842  11   10               00          246899999


Q ss_pred             CCcCCCeEEEEEEEcCCC-----C---eEEEEEEEEec---ceeeEe-cCCceeeecCCcEEEEEEecCC-CCCceEEEe
Q psy14542         66 VQREDAGMYQCHVSADDD-----S---AQMSAQVILGG---ELVEIA-SSNQVVVDVGHRIELHCRVSPK-RLSSAKAWL  132 (371)
Q Consensus        66 ~~~~d~G~Y~C~~~~~~~-----~---~~~~~~l~v~~---~~~~~~-~~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~  132 (371)
                      ++.+|+|.|.|.+.+..+     .   ....+.|.|..   .+|.+. ..+...+..|+.++|.|.+.+. |.+..+.|+
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  165 (225)
T 1op3_H           86 MRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN  165 (225)
T ss_dssp             CCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECC
T ss_pred             CChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEe
Confidence            999999999999998653     2   11235677763   123332 2222234689999999999876 542499999


Q ss_pred             eCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        133 KDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      +++..+... ..    .... ...|         .+..  .+.|.|.++..+|  |.|+|.|.|.
T Consensus       166 ~~~~~~~~~-~~----~~~~-~~~g---------~~~~--~s~L~i~~~~~~~--g~Y~C~a~n~  211 (225)
T 1op3_H          166 SGALTSGVH-TF----PAVL-QSSG---------LYSL--SSVVTVPSSSLGT--QTYICNVNHK  211 (225)
T ss_dssp             TTSCCTTCE-EC----CCEE-CTTS---------CEEE--EEEEEEEGGGTTC--CCCCEEEEEG
T ss_pred             cCCCcCCeE-ec----Ccee-CCCC---------CEEE--EEEEEEechhcCC--CcEEEEEEcC
Confidence            988642110 00    0000 1222         2222  2568888776554  9999999997

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.66  E-value=8.5e-16  Score=109.27  Aligned_cols=93  Identities=20%  Similarity=0.245  Sum_probs=81.1

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe----cceEEEeccCCCCCeEEEEEEEc
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      .+|.+...+.... +..|+.+.|.|.+.|.|.+.+.|++++..+....++...    ...|.|.++..+|+|.|+|.|.|
T Consensus         6 ~pp~i~~~~~~~~-v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   84 (114)
T 2cqv_A            6 SGPQIIQFPEDQK-VRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVEN   84 (114)
T ss_dssp             CCCEESCCCCSEE-EETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEEC
T ss_pred             CCCEEEeCCCCeE-EeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEE
Confidence            4566666666666 999999999999999999999999999998877777644    46799999999999999999999


Q ss_pred             CCCCceeEEEEEEecCcc
Q psy14542        296 SEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       296 ~~g~~~~~~~l~v~~~p~  313 (371)
                      ..|.....+.|.|.++|.
T Consensus        85 ~~g~~~~~~~l~V~~~p~  102 (114)
T 2cqv_A           85 KLGSRQAQVNLTVVDKPD  102 (114)
T ss_dssp             SSCEEECCEEEEEECSCS
T ss_pred             CCCcEEEEEEEEEECCCC
Confidence            999999999999988766

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.66  E-value=9.3e-16  Score=125.57  Aligned_cols=173  Identities=13%  Similarity=0.175  Sum_probs=107.2

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC--E--E-Ee-------------eC---------CeeEEEE
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG--L--V-LR-------------RN---------SDEVLVL   63 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~--~--~-~~-------------~~---------~~~~l~i   63 (371)
                      ..+...|.. +.+.+|++++|.|...  .+...+.|+|+.  .  . +.             ..         ...+|.|
T Consensus         4 ~~v~q~p~~-v~v~~G~~v~L~C~~~--~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I   80 (252)
T 1oga_E            4 GGITQSPKY-LFRKEGQNVTLSCEQN--LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTV   80 (252)
T ss_dssp             -CEECSCSE-EEEETTCCEEECCEEC--SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEE
T ss_pred             ccceEcCCe-EEEcCCCcEEEEEEeC--CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEE
Confidence            345555665 8899999999999763  346789999842  1  1 10             00         2458999


Q ss_pred             ccCCcCCCeEEEEEEEcCCC---CeEEEEEEEEec-----ceeeEecC-Cc-eeeecCCcEEEEEEecCC-CCCceEEEe
Q psy14542         64 DRVQREDAGMYQCHVSADDD---SAQMSAQVILGG-----ELVEIASS-NQ-VVVDVGHRIELHCRVSPK-RLSSAKAWL  132 (371)
Q Consensus        64 ~~~~~~d~G~Y~C~~~~~~~---~~~~~~~l~v~~-----~~~~~~~~-~~-~~~~~g~~v~l~C~~~~~-~~~~~v~W~  132 (371)
                      .+++.+|+|.|.|.+.+...   .......|.|..     .+|.+... +. ..+..|+.++|.|.+.+. |.++.+.|+
T Consensus        81 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~  160 (252)
T 1oga_E           81 TSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW  160 (252)
T ss_dssp             CSCCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             CcCChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEE
Confidence            99999999999999987521   111223466652     23444332 21 122468999999999886 443599999


Q ss_pred             eCCEEeeeCCeeE-EEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        133 KDGLVLRRNSDEV-LVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       133 ~~~~~~~~~~~~~-~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      +++..+....... ...........|.|         .+.  +.|.|......|+.|.|+|.+.|.
T Consensus       161 ~~g~~l~~~~~~~~~~~~~~~~~~~gt~---------~~~--s~L~i~~~~~~d~~~~ytC~v~~~  215 (252)
T 1oga_E          161 VNGKEVHSGVSTDPQPLKEQPALNDSRY---------SLS--SRLRVSATFWQNPRNHFRCQVQFY  215 (252)
T ss_dssp             ETTEEECSSEEECSSCEESCTTSTTCCE---------EEE--EEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred             ECCEECCCCcccccccccccccCCCCCE---------EEE--EEEEECHHHhccCCCEEEEEEEcC
Confidence            9998876432100 00000111233333         222  567787766543278899999987

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.66  E-value=1e-15  Score=124.26  Aligned_cols=198  Identities=14%  Similarity=0.167  Sum_probs=112.0

Q ss_pred             CceeeecCCcEEEEEEecCCCC---CceEEEeeCCEEeeeCCeeEEEEcc--cCcCCCeeEEEEEeCCceeEec-----c
Q psy14542        104 NQVVVDVGHRIELHCRVSPKRL---SSAKAWLKDGLVLRRNSDEVLVLDR--VQREDAGMYQCHIEDGKYHMLS-----S  173 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~g~y~~~~~~~~~~~~~-----~  173 (371)
                      +...+.+|++++|.|.+.+.+.   ...+.|++....  ......+.+..  ....+...+......+++.+..     +
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   85 (239)
T 3tv3_H            8 GPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPG--KGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNL   85 (239)
T ss_dssp             SCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTT--SCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTE
T ss_pred             CCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCC--CCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCE
Confidence            3445689999999999976542   258999984310  00111111110  0000000000000012333332     2


Q ss_pred             ceEEEEEeecCCccceeEEEeeccccc---------e-eeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEE
Q psy14542        174 GELIIHQVDESDRYRSYQCRGVNKLTG---------A-SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILP  243 (371)
Q Consensus       174 ~~l~i~~~~~~d~~g~y~C~~~~~~~~---------~-~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~  243 (371)
                      ..|.|.+++.+| +|.|.|.+.+. .+         . .........+.|... ...+|.+........ +..|+.+.|.
T Consensus        86 ~~L~I~~v~~~D-sG~Y~C~~~~~-~~~~~~~w~~~~~~~~~~~~t~l~V~~~-~~~~P~v~~~~~~~~-~~~g~~v~l~  161 (239)
T 3tv3_H           86 VFLKLNSVTAAD-TATYYCARFGG-EVLRYTDWPKPAWVDLWGRGTLVTVSSA-STKGPSVFPLAPSSK-STSGGTAALG  161 (239)
T ss_dssp             EEEEECSCCGGG-CEEEEEEEEEE-ECSSCSSSCEEEEEEEECCCEEEEECCC-CCBCCEEEEECCCCC-C--TTEEEEE
T ss_pred             EEEEECCCChhh-CEEEEEEEecC-ccccccccccccceeeeCCCcEEeeccC-CCcCCEEEEECCChh-hccCCcEEEE
Confidence            469999999999 99999999865 21         0 011111114555421 114455554333333 5679999999


Q ss_pred             EEeec-CCCC-ceEEEeCCcccccC--------CceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        244 CSAQG-NPLP-TIKWYKQDSPVEES--------DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       244 C~~~~-~p~~-~v~W~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      |.+.+ .|.+ .+.|++++..+...        .......+.|.|.....+| |.|+|.|.|..+.......|.+
T Consensus       162 C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~  235 (239)
T 3tv3_H          162 CLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  235 (239)
T ss_dssp             EEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEEeeEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEecc
Confidence            99987 4544 48999988643211        1111223468899888888 9999999999887666655544

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.65  E-value=1.5e-15  Score=124.42  Aligned_cols=170  Identities=15%  Similarity=0.170  Sum_probs=103.5

Q ss_pred             EEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--CE---EEee---------------C-------CeeEEEEccC
Q psy14542         14 EMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--GL---VLRR---------------N-------SDEVLVLDRV   66 (371)
Q Consensus        14 ~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~~---~~~~---------------~-------~~~~l~i~~~   66 (371)
                      ...|.. +.+.+|++++|.|.. .+.+...+.|+|.  +.   .+..               .       ... |.|.++
T Consensus         5 ~q~p~~-v~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v   81 (253)
T 3to4_D            5 EQNPRW-RLVPRGQAVNLRCIL-KNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVA   81 (253)
T ss_dssp             EEECSE-EEEESSCCEEEEEEC-SCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEE
T ss_pred             EeCCCe-EEEeCCCcEEEEEEe-CCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccC
Confidence            344555 889999999999964 4566788999981  11   0000               0       111 999999


Q ss_pred             CcCCCeEEEEEEEcCCC---Ce---EEEEEEEEec-----ceeeEecCCc--eeeecCCcEEEEEEecCC-CCCceEEEe
Q psy14542         67 QREDAGMYQCHVSADDD---SA---QMSAQVILGG-----ELVEIASSNQ--VVVDVGHRIELHCRVSPK-RLSSAKAWL  132 (371)
Q Consensus        67 ~~~d~G~Y~C~~~~~~~---~~---~~~~~l~v~~-----~~~~~~~~~~--~~~~~g~~v~l~C~~~~~-~~~~~v~W~  132 (371)
                      +.+|+|.|.|.+.+..+   ..   .....|.|..     .+|.+.....  ..+..|+.++|.|.+.+. |.+..++|+
T Consensus        82 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~  161 (253)
T 3to4_D           82 NMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW  161 (253)
T ss_dssp             SCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             ChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEE
Confidence            99999999999986543   11   1224555542     2333322111  111356899999999884 443489999


Q ss_pred             eCCEEeeeCCeeEE-EEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        133 KDGLVLRRNSDEVL-VLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       133 ~~~~~~~~~~~~~~-~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      ++|..+........ ..........|.|         ...  +.|.|.....+|..|.|+|.+.+.
T Consensus       162 k~g~~l~~~~~~~~~~~~~~~~~~~g~~---------~~~--s~l~i~~~~~~d~~~~ytC~v~h~  216 (253)
T 3to4_D          162 VNGKEVHSGVSTDPQPLKEQPALNDSRY---------ALS--SRLRVSATFWQNPRNHFRCQVQFY  216 (253)
T ss_dssp             ETTEEECTTEEECSSCEESSTTCTTCCE---------EEE--EEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred             ECCEECCCceecccccccccccCCCCCE---------EEE--EEEEECHHHhccCCCEEEEEEEeC
Confidence            99998765321100 0000111123333         222  567787776666356999999987

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.65  E-value=2.5e-15  Score=121.04  Aligned_cols=163  Identities=13%  Similarity=0.210  Sum_probs=102.8

Q ss_pred             CCCcEEEeccCcEEEEEEecCCCCC----CeeEEEeC--CEE---Eee--------------C----------CeeEEEE
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKRLS----SAKAWLKD--GLV---LRR--------------N----------SDEVLVL   63 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~~~----~~~~W~~~--~~~---~~~--------------~----------~~~~l~i   63 (371)
                      |.. +.+.+|++++|.|.+.. .+.    +.+.|+|+  +..   +..              .          ...+|.|
T Consensus         7 p~~-~~v~~G~~v~L~C~~~~-~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   84 (228)
T 3bae_H            7 SGP-GLLKPSQTLSLTCSFSG-FSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKI   84 (228)
T ss_dssp             ECC-SEECTTCCEEEEEEEES-SCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEE
T ss_pred             CCc-eeecCCCeEEEEEEEeC-cccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEE
Confidence            444 68999999999996653 332    78999983  211   100              0          2478999


Q ss_pred             ccCCcCCCeEEEEEEEcCCC------C--e-EEEEEEEEec---ceeeEec-CCceeeecCCcEEEEEEecCC-CCCceE
Q psy14542         64 DRVQREDAGMYQCHVSADDD------S--A-QMSAQVILGG---ELVEIAS-SNQVVVDVGHRIELHCRVSPK-RLSSAK  129 (371)
Q Consensus        64 ~~~~~~d~G~Y~C~~~~~~~------~--~-~~~~~l~v~~---~~~~~~~-~~~~~~~~g~~v~l~C~~~~~-~~~~~v  129 (371)
                      .+++.+|+|.|.|.+.+..+      .  . ...+.|.|..   .+|.+.. .+...+.+|+.++|.|.+.+. |.+..+
T Consensus        85 ~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v  164 (228)
T 3bae_H           85 TSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTL  164 (228)
T ss_dssp             CSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEE
T ss_pred             cCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEE
Confidence            99999999999999987653      1  1 1235677763   2333332 333334689999999999886 552499


Q ss_pred             EEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecccccee
Q psy14542        130 AWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS  202 (371)
Q Consensus       130 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~  202 (371)
                      .|++++..+..... ....     .. |.|         ..  .+.|.|..+.. | .|.|+|.+.|. .+..
T Consensus       165 ~W~~~~~~~~~~~~-~~~~-----~~-~~~---------~~--~s~L~i~~~~~-d-~g~YtC~~~n~-~~~~  216 (228)
T 3bae_H          165 TWNSGSLSSGVHTF-PAVL-----QS-DLY---------TL--SSSVTVTSSTW-P-SESITCNVAHP-ASST  216 (228)
T ss_dssp             EEGGGTCCTTEEEE-EEEE-----ET-TEE---------EE--EEEEEEETTTT-T-TSCCEEEEEEG-GGTE
T ss_pred             EEeeCCcccCceEc-Ccee-----CC-CcE---------EE--EEEEEEEhhhc-C-CCcEEEEEEEC-CCCC
Confidence            99998764311100 0000     01 222         21  25788887776 6 59999999998 5543

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.65  E-value=1.6e-15  Score=131.53  Aligned_cols=169  Identities=11%  Similarity=0.162  Sum_probs=111.4

Q ss_pred             ceEEEeCCCcEE-EeccCcEEEEEEecCCC--C-CCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCe
Q psy14542         11 LSIEMSPSGQVV-VDVGHRIELHCRVSPKR--L-SSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAG   72 (371)
Q Consensus        11 ~~~~~~p~~~~~-~~~G~~v~l~C~~~~~~--~-~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G   72 (371)
                      +.+.+.+..... +..|++++|.|.+....  | ...|.|+|++..+...              ....|.|.+++.+|+|
T Consensus       167 p~v~~~~p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g  246 (376)
T 2aty_A          167 SSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGK  246 (376)
T ss_pred             cEEEEeCcCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCC
Confidence            555555544234 78999999999765442  3 2469999988655321              2347999999999999


Q ss_pred             EEEEEEEcCCCCeEEEEEE----EEecceeeEecCCcee-eecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeEE
Q psy14542         73 MYQCHVSADDDSAQMSAQV----ILGGELVEIASSNQVV-VDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEVL  146 (371)
Q Consensus        73 ~Y~C~~~~~~~~~~~~~~l----~v~~~~~~~~~~~~~~-~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~  146 (371)
                      .|+|.+.+..+.......+    .+. .+|.+...+... ...|+.++|.|.+.+..+ .+.|+|++++..+.....   
T Consensus       247 ~Y~C~~~~~~~~~~~~~~v~~~~~~~-~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~---  322 (376)
T 2aty_A          247 EFKCRVNSAAFPAPIEKTISKTKGRP-KAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKN---  322 (376)
T ss_pred             EEEEEEecCCCCCceEEEEcCCCCCC-cCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEe---
Confidence            9999999876643332233    233 345544433332 246889999999998633 479999999987643211   


Q ss_pred             EEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        147 VLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       147 ~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                        .......+|.|         .+.  +.|.|.....+| .|.|+|.|.+.
T Consensus       323 --~~~~~~~dgty---------~~~--s~L~i~~~~~~~-~~~YtC~v~h~  359 (376)
T 2aty_A          323 --TQPIMNTNESY---------FVY--SKLNVQKSNWEA-GNTFTCSVLHE  359 (376)
T ss_pred             --CCceECCCCCE---------EEE--EEEEEcHHHhCC-CCcEEEEEEeC
Confidence              11111233333         222  567788777788 99999999987

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.65  E-value=4e-16  Score=125.98  Aligned_cols=171  Identities=14%  Similarity=0.175  Sum_probs=107.8

Q ss_pred             ccceEEEeCCCcEE-EeccCcEEEEEEecCCC--C-CCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCC
Q psy14542          9 SSLSIEMSPSGQVV-VDVGHRIELHCRVSPKR--L-SSAKAWLKDGLVLRRN--------------SDEVLVLDRVQRED   70 (371)
Q Consensus         9 ~~~~~~~~p~~~~~-~~~G~~v~l~C~~~~~~--~-~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d   70 (371)
                      .+|.+.+.+..... +..|+.++|.|.+....  | ...+.|+|||..+...              ....|.|.....+|
T Consensus        21 ~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d  100 (240)
T 4acp_A           21 GGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLN  100 (240)
T ss_dssp             --CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHH
T ss_pred             CCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccC
Confidence            35777777776444 55799999999776655  4 4579999999987422              12467788777778


Q ss_pred             CeEEEEEEEcCCCCe--EEEEEE--EEecceeeEecCCcee-eecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCee
Q psy14542         71 AGMYQCHVSADDDSA--QMSAQV--ILGGELVEIASSNQVV-VDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDE  144 (371)
Q Consensus        71 ~G~Y~C~~~~~~~~~--~~~~~l--~v~~~~~~~~~~~~~~-~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~  144 (371)
                      .|.|+|.+.+..+..  ...+.+  .+. .+|.+...+... ...|+.++|.|.+.++ |....++|+++|..+....  
T Consensus       101 ~~~YtC~v~h~~~~~~~~~~i~~~~~~~-~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~--  177 (240)
T 4acp_A          101 GKEYKCKVSNKALPAPIEKTISKAKGQP-REPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYK--  177 (240)
T ss_dssp             TCCEEEEEECC----CEEEEECCCCSCC-BCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEE--
T ss_pred             CCEEEEEEEcCCCCccccccccccCCCC-CCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcC--
Confidence            999999999876643  233332  122 334443332221 2358999999999885 4435899999998754211  


Q ss_pred             EEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        145 VLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       145 ~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                         ........+|.|         .+.  +.|.+......+ .|.|+|.+.+.
T Consensus       178 ---~~~~~~~~dgt~---------~~~--s~L~v~~~~~~~-~~~ytC~V~h~  215 (240)
T 4acp_A          178 ---ATPPVLDSDGSF---------FLY--SKLTVDKSRWQQ-GNVFSCSVMHE  215 (240)
T ss_dssp             ---ECCCEECTTSCE---------EEE--EEEEEEHHHHHT-TCCEEEEEECT
T ss_pred             ---ccCceECCCCCE---------EEE--EEEEEChHHhCC-CCEEEEEEEEC
Confidence               111111223333         222  567777666667 89999999987

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.65  E-value=3.2e-15  Score=120.80  Aligned_cols=187  Identities=10%  Similarity=0.139  Sum_probs=108.0

Q ss_pred             CceeeecCCcEEEEEEecCCC---CCceEEEeeCCEEeeeCCeeEEEEccc--------CcCCCeeEEEEEeCCceeEec
Q psy14542        104 NQVVVDVGHRIELHCRVSPKR---LSSAKAWLKDGLVLRRNSDEVLVLDRV--------QREDAGMYQCHIEDGKYHMLS  172 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~--------~~~~~g~y~~~~~~~~~~~~~  172 (371)
                      +...+.+|++++|.|.+.+..   ....+.|++....  ......+.+...        .....+         ++.+..
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---------R~~~~~   76 (232)
T 3qhz_H            8 GPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPG--KALEWLALIDWDDDTYYITYSSSLKT---------RLTISK   76 (232)
T ss_dssp             CCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTT--SCCEEEEEEESSSSCEEECCCTTTTT---------TEEEEE
T ss_pred             CCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCC--CCcEEEEEEECCCCccccccCccccC---------ceEEEe
Confidence            344568999999999997532   1134499984310  011111111100        011122         333332


Q ss_pred             -----cceEEEEEeecCCccceeEEEeecccc--------ceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCe
Q psy14542        173 -----SGELIIHQVDESDRYRSYQCRGVNKLT--------GASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDES  239 (371)
Q Consensus       173 -----~~~l~i~~~~~~d~~g~y~C~~~~~~~--------~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~  239 (371)
                           +..|.|.+++.+| +|.|.|.+.+. .        .......   .+.|... ...+|.+........ +..|+.
T Consensus        77 ~~~~~~~sL~I~~v~~~D-sG~Y~C~~~~~-~~~~~~~~~~~~~~~~---~l~V~~~-~~~~P~v~~~~~~~~-~~~g~~  149 (232)
T 3qhz_H           77 DTSKSQVVLTMTNMDPVD-TATYYCARTLR-VSGDYVRDFDLWGRGT---LVTVSSA-STKGPSVFPLAPSSK-STSGGT  149 (232)
T ss_dssp             ETTTTEEEEEECSCCGGG-CEEEEEEEECC-C---CCCCCCEECCCE---EEEECSS-CCBCCEEEEECC--------CE
T ss_pred             ccCCCEEEEEECcCChhh-CEEEEEEEeec-cCccccccceeeCCCe---EEEEecC-CCCCCEEEEeccccc-ccCCCc
Confidence                 2469999999999 99999999865 2        1111112   4555421 114455553333333 667999


Q ss_pred             EEEEEEeecCCC--CceEEEeCCcccccC--------CceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542        240 VILPCSAQGNPL--PTIKWYKQDSPVEES--------DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA  309 (371)
Q Consensus       240 ~~l~C~~~~~p~--~~v~W~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  309 (371)
                      ++|.|.+.+.++  ..+.|++++..+...        .......+.|.|......| |.|+|.|.|..+.......|.+.
T Consensus       150 v~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~~  228 (232)
T 3qhz_H          150 AALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK  228 (232)
T ss_dssp             EEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred             EEEEEEEeeEeCCCeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCCC
Confidence            999999987443  358899988643211        1111223468899988889 99999999998887776666554

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.65  E-value=6.1e-16  Score=125.52  Aligned_cols=168  Identities=11%  Similarity=0.211  Sum_probs=104.7

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC--E---EEe-------------e---------CCeeEEEEcc
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG--L---VLR-------------R---------NSDEVLVLDR   65 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~--~---~~~-------------~---------~~~~~l~i~~   65 (371)
                      +...|.. +.+.+|++++|.|.+.  .+.+.+.|+|++  .   .+.             .         ....+|.|.+
T Consensus         2 v~q~p~~-v~v~~G~~v~L~C~~~--~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~   78 (238)
T 1bec_A            2 VTQSPRN-KVAVTGGKVTLSCQQT--NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILEL   78 (238)
T ss_dssp             EEEECSE-EEEETTCCEEEEEEES--SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESS
T ss_pred             cccCCCe-eEEeCCCcEEEEEEeC--CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEec
Confidence            3445555 8899999999999763  356789999842  1   110             0         1346899999


Q ss_pred             CCcCCCeEEEEEEEcCCC----Ce-EEEEEEEEec-----ceeeEecC-Cc-eeeecCCcEEEEEEecCC-CCCceEEEe
Q psy14542         66 VQREDAGMYQCHVSADDD----SA-QMSAQVILGG-----ELVEIASS-NQ-VVVDVGHRIELHCRVSPK-RLSSAKAWL  132 (371)
Q Consensus        66 ~~~~d~G~Y~C~~~~~~~----~~-~~~~~l~v~~-----~~~~~~~~-~~-~~~~~g~~v~l~C~~~~~-~~~~~v~W~  132 (371)
                      ++.+|+|.|.|.+.+..+    .. .....|.|..     .+|.+... +. ..+..|+.++|.|.+.+. |.+..+.|+
T Consensus        79 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~  158 (238)
T 1bec_A           79 ATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWW  158 (238)
T ss_dssp             CCGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEE
T ss_pred             CCcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEE
Confidence            999999999999997632    11 1224566653     23444332 22 223579999999999886 443599999


Q ss_pred             eCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        133 KDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      +++..+.......   .......         ++.+.+.  +.|.|......|+.|.|+|.+.|.
T Consensus       159 ~~g~~~~~~~~~~---~~~~~~~---------~g~~~~~--s~L~i~~~~~~d~~~~ytC~v~~~  209 (238)
T 1bec_A          159 VNGKEVHSGVSTD---PQAYKES---------NYSYCLS--SRLRVSATFWHNPRNHFRCQVQFH  209 (238)
T ss_dssp             ETTEEECTTEEEC---SSCEEEE---------TTEEEEE--EEECCCHHHHTCTTCEEEEEEEEC
T ss_pred             ECCEECCCceecc---cceEeCC---------CCCEEEE--EEEEEcHHHhccCCCeEEEEEEcC
Confidence            9998876432100   0000011         1222221  345555555444267899999987

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.65  E-value=8.1e-15  Score=118.19  Aligned_cols=196  Identities=10%  Similarity=0.137  Sum_probs=113.6

Q ss_pred             CceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ceEE
Q psy14542        104 NQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GELI  177 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~l~  177 (371)
                      +...+.+|++++|.|.+.+.. ....+.|++....  ......+.+....   ...+......+++.+..+     ..|.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~--~~~~~~~~~~~~~---~~~~~~~~~~~R~~~~~~~~~~~~sL~   82 (230)
T 3n9g_H            8 GAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPG--QGLEWMGIINPSG---GSTTYAQKLQGRVTMTRDTSTSTVYME   82 (230)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTT--SCEEEEEEECTTT---CCEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             CCEEEcCCCCEEEEEEeecceecCcEEEEEEECCC--CCcEEEEEEecCC---CceecCcccCCcEEEEecCCCCEEEEE
Confidence            344568999999999997532 2268999973210  0001111111100   000000000224433322     3599


Q ss_pred             EEEeecCCccceeEEEeecccc----ceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-C-C
Q psy14542        178 IHQVDESDRYRSYQCRGVNKLT----GASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-P-L  251 (371)
Q Consensus       178 i~~~~~~d~~g~y~C~~~~~~~----~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~  251 (371)
                      |.+++.+| +|.|.|.+.+...    +..........+.|..... .+|.+........ +..|+.+.|.|.+.+. | .
T Consensus        83 I~~v~~~D-sG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~-~~P~v~~~~~~~~-~~~g~~v~L~C~~~~~~P~~  159 (230)
T 3n9g_H           83 LSSLRSED-TAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSAST-KGPSVFPLAPSSK-STSGGTAALGCLVKDYFPEP  159 (230)
T ss_dssp             ECSCCGGG-CEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCC-BCCEEEEECCCCC-CCTTCEEEEEEEEEEEBSSC
T ss_pred             ECCCChhh-CEEEEEEEccCCCCcccccccccCCCEEEEEEecCC-CCCEEEecCCCcc-ccCCCCEEEEEEEEeEECCC
Confidence            99999999 9999999987510    1111111112555542211 3455543333333 6689999999999874 4 3


Q ss_pred             CceEEEeCCcccccCC----------ceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEec
Q psy14542        252 PTIKWYKQDSPVEESD----------RIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAH  310 (371)
Q Consensus       252 ~~v~W~~~~~~~~~~~----------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  310 (371)
                      +.+.|  ++..+....          ......+.|.|.....+| |.|+|.|.|..+.......|.|.+
T Consensus       160 ~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~~  225 (230)
T 3n9g_H          160 VTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPKS  225 (230)
T ss_dssp             CEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCCT
T ss_pred             EEEEE--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCCC
Confidence            56999  655443211          111122478999999999 999999999988877777766654

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.65  E-value=3.9e-15  Score=121.90  Aligned_cols=165  Identities=14%  Similarity=0.196  Sum_probs=101.1

Q ss_pred             EEEeccCcEEEEEEecC-CCCCCeeEEEeCC-----EEEee-------------------------CCeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSP-KRLSSAKAWLKDG-----LVLRR-------------------------NSDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~-~~~~~~~~W~~~~-----~~~~~-------------------------~~~~~l~i~~~~~~   69 (371)
                      +.+.+|++++|.|.+.. ..+...+.|+|..     ..+..                         ....+|.|.+++.+
T Consensus        10 v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (253)
T 3liz_H           10 GLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLKSE   89 (253)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCChh
Confidence            78999999999997653 2235679999831     11100                         03456999999999


Q ss_pred             CCeEEEEEEEcCC----CCeEEEEEEEEe---cceeeEe-cCCceeeecCCcEEEEEEecC-CCCCceEEEeeCCEEeee
Q psy14542         70 DAGMYQCHVSADD----DSAQMSAQVILG---GELVEIA-SSNQVVVDVGHRIELHCRVSP-KRLSSAKAWLKDGLVLRR  140 (371)
Q Consensus        70 d~G~Y~C~~~~~~----~~~~~~~~l~v~---~~~~~~~-~~~~~~~~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~  140 (371)
                      |+|.|.|.+.+..    ........|.|.   ..+|.+. ..+...+..|+.++|.|.+.+ .|.+..+.|++++..+..
T Consensus        90 DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~~  169 (253)
T 3liz_H           90 DTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGV  169 (253)
T ss_dssp             GCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTBCTTE
T ss_pred             hCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCeecce
Confidence            9999999998752    111233456664   1334443 233333467999999999988 454348999998863311


Q ss_pred             CCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeee
Q psy14542        141 NSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSV  206 (371)
Q Consensus       141 ~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~  206 (371)
                      ...     ... ..+ |         .+...  +.|.|.....+|  |.|+|.+.|. .+......
T Consensus       170 ~~~-----~~~-~~~-g---------~~~~~--s~L~i~~~~~~d--g~ytC~v~~~-~~~~~~~~  214 (253)
T 3liz_H          170 HTF-----PAV-LQS-D---------LYTLS--SSVTVPSSTWPS--ETVTCNVAHP-ASSTKVDK  214 (253)
T ss_dssp             EEC-----CCE-EET-T---------EEEEE--EEEEEETTSTTT--SCCEEEEEEG-GGTEEEEE
T ss_pred             EeC-----Ccc-ccC-C---------eEEEE--EEEEEcHHHCCC--ceEEEEEEEC-CCCcceEE
Confidence            100     000 001 2         22222  578888776654  8999999998 55444433

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.64  E-value=1.6e-14  Score=136.39  Aligned_cols=239  Identities=11%  Similarity=0.110  Sum_probs=152.1

Q ss_pred             cCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCC-CeEEEEEEEcCCCCeEEE-EEEEEe--cceeeEe
Q psy14542         26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRED-AGMYQCHVSADDDSAQMS-AQVILG--GELVEIA  101 (371)
Q Consensus        26 G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~~~~~-~~l~v~--~~~~~~~  101 (371)
                      +..+.|.| ...+.|.+.+.|.++|..+..-....+.|..+...+ .+.|.|.+.+..|..... +.+.+.  ..+|.+.
T Consensus        91 ~g~l~v~c-~~~g~P~p~i~W~k~g~~~~~~~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p~~~  169 (731)
T 2v5y_A           91 PGLLNVYV-KVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFL  169 (731)
T ss_dssp             SEEEEEEE-EETTCCCCSEEEEECCCCCSSCEEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSCEEC
T ss_pred             cceEEEEE-ecCCCCccceeEEEeCCcCCceeEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeecccccccccc
Confidence            45899999 456778899999999877653344567777653333 489999776666643211 222211  1455666


Q ss_pred             cCCceeeecCCcEEEEEEecCCCCCceEE-Ee--eCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEE
Q psy14542        102 SSNQVVVDVGHRIELHCRVSPKRLSSAKA-WL--KDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELII  178 (371)
Q Consensus       102 ~~~~~~~~~g~~v~l~C~~~~~~~~~~v~-W~--~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i  178 (371)
                      ......+..|++++|.|.+.+.|. +.+. |+  +++..+......  .+.               ...    ..+.|.|
T Consensus       170 ~~~~~~v~~G~~v~l~C~~~g~P~-p~i~~W~~~~~g~~l~~~~~~--~~~---------------~~~----~~~~l~I  227 (731)
T 2v5y_A          170 RIQNVEVNAGQFATFQCSAIGRTV-AGDRLWLQGIDVRDAPLKEIK--VTS---------------SRR----FIASFNV  227 (731)
T ss_dssp             CCCCEEEETTSCEEEEEEEESCCC-TTCEEEEEESSSCCEEEEEEE--ECC---------------SSE----EEEEEEE
T ss_pred             cccceEEeCCCcEEEEEEeCCCCC-CceeEEEecCCCccccccceE--Eec---------------ccc----ceEEEEE
Confidence            555555689999999999999888 6776 87  677655432100  000               001    1268999


Q ss_pred             EEeecCCccceeEEEeeccccce-eeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec---CCC-C-
Q psy14542        179 HQVDESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG---NPL-P-  252 (371)
Q Consensus       179 ~~~~~~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~---~p~-~-  252 (371)
                      .++...| .|.|+|.|.|. .|. .....   .+.|.     .+|.....+...  ......+.|.|....   ..+ . 
T Consensus       228 ~~~~~~d-~g~Y~c~A~n~-~G~~~s~~~---~l~V~-----~~P~~~~~p~~~--~~~~~~v~l~w~~~~~~g~~~i~~  295 (731)
T 2v5y_A          228 VNTTKRD-AGKYRCMIRTE-GGVGISNYA---ELVVK-----EPPVPIAPPQLA--SVGATYLWIQLNANSINGDGPIVA  295 (731)
T ss_dssp             CSCCTTT-CEEEEEEEEET-TEEEECCCE---EEEEE-----CCCCBSSCCEEE--EECSSCEEEECCCSSBSSCSCCCE
T ss_pred             ccccccc-CeEEEEEEECC-CCCcceeeE---EEEEe-----cCCCCCCCccee--ccCCceEEEEeCCcccCCCCccEE
Confidence            9999999 99999999999 665 44444   67776     334332222222  224567888887532   222 2 


Q ss_pred             -ceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEE--cCCCCce
Q psy14542        253 -TIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVAN--NSEGQDK  301 (371)
Q Consensus       253 -~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~--n~~g~~~  301 (371)
                       .+.|...+....  .........+.|.++...+...|+|.|.  |..|...
T Consensus       296 Y~v~~~~~~~~~~--~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~  345 (731)
T 2v5y_A          296 REVEYCTASGSWN--DRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGS  345 (731)
T ss_dssp             EEEEEEESSSSCE--EEEECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCC
T ss_pred             EEEEEEECCCCce--EEeccCcceEEEeCCCCCCEEEEEEEEEecCCCcccc
Confidence             466765433211  0111234678999999988889999999  9998764

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.64  E-value=1.6e-15  Score=126.13  Aligned_cols=183  Identities=14%  Similarity=0.215  Sum_probs=109.0

Q ss_pred             eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEccc--CcCCCeeEEEEEeCCceeEe----ccceEEEE
Q psy14542        106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRV--QREDAGMYQCHIEDGKYHML----SSGELIIH  179 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~g~y~~~~~~~~~~~~----~~~~l~i~  179 (371)
                      ..+.+|++++|.|.+.+.+. +.+.|++++...  ...........  .....+.|     .+++.+.    .+..|.|.
T Consensus        34 v~v~~G~~v~L~C~~~~~~~-~~v~W~r~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~R~~~~~~~~~~~sL~I~  105 (279)
T 2wbj_D           34 VISKSGTSVKIECRSLDFQA-TTMFWYRQFPKQ--SLMLMATSNEGSKATYEQGVE-----KDKFLINHASLTLSTLTVT  105 (279)
T ss_dssp             EEEETTSCEEEEEEESSSCE-EEEEEEEECSSS--CCEEEEEEESSSCCCCCSSSC-----SSSEEEEECSSSEEEEEES
T ss_pred             EEecCCCeEEEEEEeCCCCC-CeEEEEEeCCCC--CeEEEEEEecCCcceecCCcc-----CCcEEEEeCCCCEEEEEEc
Confidence            44589999999999987665 899999864210  00111111110  00000000     1233332    23579999


Q ss_pred             EeecCCccceeEEEeecccc---c--eeeeeeccceeeeecch-hccccceeeeee-eeeeeecCCeEEEEEEeecC-CC
Q psy14542        180 QVDESDRYRSYQCRGVNKLT---G--ASLLSVNRGRLSLTENK-RLLSAAKMFEKH-RILNVKKDESVILPCSAQGN-PL  251 (371)
Q Consensus       180 ~~~~~d~~g~y~C~~~~~~~---~--~~~~~~~~~~l~v~~~~-~~~~p~~~~~~~-~~~~~~~g~~~~l~C~~~~~-p~  251 (371)
                      +++.+| +|.|.|.+.+...   .  ......   .+.|.... ...+|.+..... ... +..|+.+.|.|.+.+. |.
T Consensus       106 ~v~~~D-~G~Y~C~~~~~~~~~~~~~~~~~~~---~l~V~~~~~~~~~P~v~~~~~~~~~-~~~g~~v~L~C~~~g~~P~  180 (279)
T 2wbj_D          106 SAHPED-SSFYICSARDLTSGANNEQFFGPGT---RLTVTEDLKNVFPPEVAVFEPSEAE-ISHTQKATLVCLATGFYPD  180 (279)
T ss_dssp             SCCGGG-CEEEEEEEEETTCBTSCCEEECCCE---EEEEESCGGGCBCCEEEEEECCHHH-HHHHSCCEEEEEEEEEBSS
T ss_pred             cCCccC-CEEEEEEEcccccCCccceeeCCCE---EEEEecCCCCCCCCEEEEECCCccc-ccCCCceEEEEEEeeEcCC
Confidence            999999 9999999998310   1  111122   56665321 113455544322 222 4578999999999986 53


Q ss_pred             -CceEEEeCCcccccCCce---------------EEecceEEEeccCCCC-CeEEEEEEEcCCCCce
Q psy14542        252 -PTIKWYKQDSPVEESDRI---------------QRIGSSLSISHVEESD-SGVWNCVANNSEGQDK  301 (371)
Q Consensus       252 -~~v~W~~~~~~~~~~~~~---------------~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~  301 (371)
                       +.+.|++++..+..+...               ....+.|.|......| .|.|+|+|.|......
T Consensus       181 ~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~~  247 (279)
T 2wbj_D          181 HVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  247 (279)
T ss_dssp             CEEEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCTT
T ss_pred             CcEEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCCC
Confidence             689999999877543211               0112347777776654 7789999999876554

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.64  E-value=1.3e-15  Score=106.37  Aligned_cols=84  Identities=27%  Similarity=0.348  Sum_probs=74.1

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVS   79 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~   79 (371)
                      .+|.|...|.. +.+.+|+.+.|.|.+ .+.|.+.+.|+|||..+...         ...+|.|.+++.+|+|.|+|.|.
T Consensus        12 ~pP~f~~~p~~-~~v~~G~~~~l~C~~-~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   89 (107)
T 3knb_B           12 SPPCFLRFPRP-VRVVSGAEAELKCVV-LGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRAR   89 (107)
T ss_dssp             EEEEEEECCCC-EEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEeCCCc-EEEeCCCcEEEEEEE-EEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEE
Confidence            46788888887 999999999999954 57888999999999988655         45689999999999999999999


Q ss_pred             cCCCCeEEEEEEEEe
Q psy14542         80 ADDDSAQMSAQVILG   94 (371)
Q Consensus        80 ~~~~~~~~~~~l~v~   94 (371)
                      |..|.....+.|.|.
T Consensus        90 N~~G~~~~~~~l~V~  104 (107)
T 3knb_B           90 NAAGEAYAAAAVTVL  104 (107)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             ECCCEEEEEEEEEEE
Confidence            999988888999887

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.64  E-value=2e-14  Score=109.69  Aligned_cols=157  Identities=17%  Similarity=0.206  Sum_probs=108.0

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe--CCEEE-eeC-CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEE
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK--DGLVL-RRN-SDEVLVLDRVQREDAGMYQCHVSADDDSAQMS   88 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~--~~~~~-~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~   88 (371)
                      +.+.|+. ..|.+|+++.|.|.+....| ..+.|.-  ++..+ ... ....|.|.+++. | |.|.|.+..........
T Consensus         2 v~v~P~~-~~V~~G~Sv~l~Cs~~c~~p-~~~~~~t~l~~~~~~~~~~~~~~l~l~~vs~-~-g~y~C~~~c~~~~~~~~   77 (185)
T 1iam_A            2 TSVSPSK-VILPRGGSVLVTCSTSCDQP-KLLGIETPLPKKELLLPGNNRKVYELSNVQE-D-SQPMCYSNCPDGQSTAK   77 (185)
T ss_dssp             EEEESSE-EEEETTEEEEEEEEECSSSC-SEEEEECSSCEEEECSSSSSEEEEEEEEECS-C-BCCEEEEECSSCEEEEE
T ss_pred             eEEECCC-cEEeCCCCEEEEEEccCCCC-ccceEEeeCCCccEeccCCceeEEEEEecCc-C-CEEEEEEECCCCceEEE
Confidence            6678887 88999999999997653332 2477753  22333 222 446799999983 4 99999998776667888


Q ss_pred             EEEEEecceeeEecCCce-eeecCCcEEEEEEecCCCCCc--eEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeC
Q psy14542         89 AQVILGGELVEIASSNQV-VVDVGHRIELHCRVSPKRLSS--AKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED  165 (371)
Q Consensus        89 ~~l~v~~~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~  165 (371)
                      +.|.|+..|..+...+.. .+.+|+.++|.|.+.+..+..  .|+|++++..+.....        . ...+        
T Consensus        78 ~~l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~--------~-~~~~--------  140 (185)
T 1iam_A           78 TFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA--------V-GEPA--------  140 (185)
T ss_dssp             CEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC--------C-TTTE--------
T ss_pred             EEEEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccC--------C-Cccc--------
Confidence            999998555555555443 468999999999998865533  5899999998865310        0 0000        


Q ss_pred             CceeEeccceEEEEEeecCCccceeEEEeeccc
Q psy14542        166 GKYHMLSSGELIIHQVDESDRYRSYQCRGVNKL  198 (371)
Q Consensus       166 ~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~  198 (371)
                             +..|++. +.++|+...|+|.|.+..
T Consensus       141 -------~~tl~~~-~~reD~g~~~sC~A~~~l  165 (185)
T 1iam_A          141 -------EVTTTVL-VRRDHHGAQFSCRTELDL  165 (185)
T ss_dssp             -------EEEEEEE-CCSSCSSCEEEEEEEEEC
T ss_pred             -------cEEEEEe-ceeccCCCeEEEEEEecC
Confidence                   1245555 444553679999999873

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.63  E-value=7.7e-15  Score=119.51  Aligned_cols=196  Identities=12%  Similarity=0.138  Sum_probs=109.0

Q ss_pred             CceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEE
Q psy14542        104 NQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELI  177 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~  177 (371)
                      ....+.+|++++|.|.+.+.. ....+.|++....  ........+.....   ..+......+++.+..     +..|.
T Consensus         7 ~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~--~~~~~l~~~~~~~~---~~~~~~~~~~R~~~~~~~~~~~~sL~   81 (248)
T 3u2s_H            7 GGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPG--QGLEWVAFIKYDGS---EKYHADSVWGRLSISRDNSKDTLYLQ   81 (248)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTT--SCEEEEEEECTTSS---CEEECTTTTTTEEEEEEGGGTEEEEE
T ss_pred             CCEEEeCCCCEEEEEEeccccCCccEEEEEEECCC--CCcEEEEEEecCCC---ceecCcccCCcEEEEecCCCCEEEEE
Confidence            344558999999999997532 2268999984310  00011111111000   0000000012333322     24699


Q ss_pred             EEEeecCCccceeEEEeeccccc--------------e-----eeeeeccceeeeecchhccccceeeeeeeeeeeecCC
Q psy14542        178 IHQVDESDRYRSYQCRGVNKLTG--------------A-----SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDE  238 (371)
Q Consensus       178 i~~~~~~d~~g~y~C~~~~~~~~--------------~-----~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~  238 (371)
                      |.+++.+| +|.|.|.+.+. .+              .     .........+.|.... ..+|.+........ +..|+
T Consensus        82 I~~v~~~D-sG~Y~C~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~-~~~P~v~~~~~~~~-~~~g~  157 (248)
T 3u2s_H           82 MNSLRVED-TATYFCVREAG-GPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSAS-TKGPSVFPLAPSSK-STSGG  157 (248)
T ss_dssp             ECSCCGGG-CEEEEEEEEEE-ECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCC-CBCCEEEEECCC-------C
T ss_pred             ECCCCHHH-CEEEEEEEeCC-CCccccccccccccccccccccceeeCCCEEEEEcccC-CCCCEEEEeCCCcc-ccCCC
Confidence            99999999 99999999863 10              0     1111112255554221 13455543333333 56799


Q ss_pred             eEEEEEEeec-CC-CCceEEEeCCcccccC--------CceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        239 SVILPCSAQG-NP-LPTIKWYKQDSPVEES--------DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       239 ~~~l~C~~~~-~p-~~~v~W~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      .++|.|.+.+ .| .+.+.|++++..+...        +......+.|.|.....+| |.|+|.|.|..+.......|.+
T Consensus       158 ~~~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~  236 (248)
T 3u2s_H          158 TAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP  236 (248)
T ss_dssp             EEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred             cEEEEEEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEcc
Confidence            9999999987 45 3569999988643211        1111223468888888888 9999999999887766665554


Q ss_pred             e
Q psy14542        309 A  309 (371)
Q Consensus       309 ~  309 (371)
                      .
T Consensus       237 ~  237 (248)
T 3u2s_H          237 K  237 (248)
T ss_dssp             -
T ss_pred             C
Confidence            4

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.62  E-value=4.1e-15  Score=120.93  Aligned_cols=168  Identities=11%  Similarity=0.168  Sum_probs=104.3

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCC-CCCCeeEEEeCC-----EEEe---------------eC----------CeeEE
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDG-----LVLR---------------RN----------SDEVL   61 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~~-----~~~~---------------~~----------~~~~l   61 (371)
                      +...|.. +.+.+|++++|.|.+... .+...+.|+|..     ..+.               ..          ...+|
T Consensus         4 v~q~p~~-v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   82 (242)
T 1hxm_B            4 LEQPQIS-STKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTL   82 (242)
T ss_dssp             EECCCSE-EEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEE
T ss_pred             cCcCCce-EEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEE
Confidence            4455555 889999999999976543 256789999832     1111               00          25689


Q ss_pred             EEccCCcCCCeEEEEEEEcCCC-C------eEEEEEEEEecc------eeeEecC-C-ceeeecCCcEEEEEEecCC-CC
Q psy14542         62 VLDRVQREDAGMYQCHVSADDD-S------AQMSAQVILGGE------LVEIASS-N-QVVVDVGHRIELHCRVSPK-RL  125 (371)
Q Consensus        62 ~i~~~~~~d~G~Y~C~~~~~~~-~------~~~~~~l~v~~~------~~~~~~~-~-~~~~~~g~~v~l~C~~~~~-~~  125 (371)
                      .|.+++.+|+|.|.|.+.+... .      ......|.|...      +|.+... + ...+..|+.++|.|.+.+. |.
T Consensus        83 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~  162 (242)
T 1hxm_B           83 TIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPD  162 (242)
T ss_dssp             EECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSC
T ss_pred             EECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECC
Confidence            9999999999999999987531 1      112356777631      1222211 1 1223569999999999876 43


Q ss_pred             CceEEEeeCCE-EeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecccccee
Q psy14542        126 SSAKAWLKDGL-VLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS  202 (371)
Q Consensus       126 ~~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~  202 (371)
                      ++.+.|++++. .+......     ... ..         ++.+...  +.|.|.....   .|.|+|.+.|. .+..
T Consensus       163 ~~~v~W~~~~~~~l~~~~~~-----~~~-~~---------~~~~~~~--s~L~i~~~~~---~g~y~C~v~n~-~~~~  219 (242)
T 1hxm_B          163 VIKIHWEEKKSNTILGSQEG-----NTM-KT---------NDTYMKF--SWLTVPEKSL---DKEHRCIVRHE-NNKN  219 (242)
T ss_dssp             CEEEEEEESSSCCCCCCEEC-----CCE-EC---------SSSEEEE--EEEEECTGGG---GSCEEEEEEET-TSGG
T ss_pred             CeEEEEEcCCCEeecCcccc-----cee-cC---------CCcEEEE--EEEEEccccC---CCEEEEEEEeC-CCCC
Confidence            37999999886 44322100     000 01         2233222  4677765542   38999999998 4433

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.62  E-value=1.9e-15  Score=139.15  Aligned_cols=172  Identities=15%  Similarity=0.297  Sum_probs=112.7

Q ss_pred             eeeecCCcEEEEEEe-cCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542        106 VVVDVGHRIELHCRV-SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES  184 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~  184 (371)
                      ..+.+|++++|.|.+ .+.+. +.++|++++..+....     .  ........|     .++..+..+++|.|.+++.+
T Consensus       376 ~~~~~G~~v~L~C~~~~~~~~-~~v~W~k~~~~~~~~~-----~--~~~~~~~~~-----~~r~~~~~~~~L~i~~v~~~  442 (581)
T 3o3u_N          376 ITARIGEPLVLKCKGAPKKPP-QRLEWKLNTGRTEAWK-----V--LSPQGGGPW-----DSVARVLPNGSLFLPAVGIQ  442 (581)
T ss_dssp             EEEETTSCEEECCTTCCSSSS-CEEEEEEEETTSSSCE-----E--CCSCCSSGG-----GGTSEECTTSCEEESSCCGG
T ss_pred             cceecCCcEEEeeeecCCCCC-ceEEEEEcCCeeEEEE-----e--cccCCCCCc-----CCcEEEcCCceEEEeccccc
Confidence            344899999999999 56565 8999999765221110     0  000000000     23455556678999999999


Q ss_pred             CccceeEEEeecccccee-eeeeccceeeeecchhccccceeeeeeeeeeeecCCe-EEEEEEeec-CCCCceEEEeCCc
Q psy14542        185 DRYRSYQCRGVNKLTGAS-LLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDES-VILPCSAQG-NPLPTIKWYKQDS  261 (371)
Q Consensus       185 d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~-~~l~C~~~~-~p~~~v~W~~~~~  261 (371)
                      | +|.|+|.+.+. .+.. ....   .|.|...+  ..|.+.....  . +..++. +.|.|.+.+ +|.++++|+++|.
T Consensus       443 D-~G~Y~C~~~n~-~~~~~~~~~---~l~V~~~~--~~p~i~~~~~--~-~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~  512 (581)
T 3o3u_N          443 D-EGIFRCQAMNR-NGKETKSNY---RVRVYQIP--GKPEIVDSAS--E-LTAGVPNKVGTCVSEGSYPAGTLSWHLDGK  512 (581)
T ss_dssp             G-CEEEEEEEECT-TSCEEEEEE---EEEEEBCC--CCCEEESCCS--E-ECTTSCEEEEEEEEEEEBSCCEEEEEETTE
T ss_pred             c-CeEEEEEEEcC-CCceeEEEE---EEEEEcCC--CCCEEEcCCc--c-cccCCceeEEEEECCCCCCCCeEEEEECCE
Confidence            9 99999999998 5544 4455   77776321  2333332222  2 444544 567999988 6999999999998


Q ss_pred             ccccCC-ceE--------------EecceEEEeccC-CCCCeEEEEEEEcCCCCc
Q psy14542        262 PVEESD-RIQ--------------RIGSSLSISHVE-ESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       262 ~~~~~~-~~~--------------~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~  300 (371)
                      .+.... ++.              ...++|.|..+. .++.|.|+|+|+|..+..
T Consensus       513 ~l~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~~  567 (581)
T 3o3u_N          513 PLVPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRH  567 (581)
T ss_dssp             ECCTTSTTEEEEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCSS
T ss_pred             ECCCCCCeEEEEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCCC
Confidence            876432 211              112468999888 555889999999987543

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=3.3e-15  Score=103.53  Aligned_cols=92  Identities=24%  Similarity=0.450  Sum_probs=77.7

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCccccc-CCceE-EecceEEEeccCCCCCeEEEEEEEcCC
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEE-SDRIQ-RIGSSLSISHVEESDSGVWNCVANNSE  297 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~  297 (371)
                      .+|.+...+.... +..|+.+.|.|.+.|.|.+.+.|++++..+.. ..++. ..++.|.|.++..+|+|.|+|.|.|..
T Consensus         7 ~~P~i~~~p~~~~-v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~   85 (100)
T 2edj_A            7 GPPIILQGPANQT-LAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSS   85 (100)
T ss_dssp             SSCEEEECCCCEE-EESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEEEECSS
T ss_pred             CCCEEEeCcCCEE-EcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEEEEcCC
Confidence            5667766666666 89999999999999999999999999988763 33333 345689999999999999999999999


Q ss_pred             CCceeEEEEEEecCc
Q psy14542        298 GQDKMQLFIQYAHGK  312 (371)
Q Consensus       298 g~~~~~~~l~v~~~p  312 (371)
                      |.....+.|.|.++|
T Consensus        86 g~~~~~~~l~V~~~~  100 (100)
T 2edj_A           86 GETSWSAVLDVTESG  100 (100)
T ss_dssp             CCCBCCEEEEEESCC
T ss_pred             CCEEEEEEEEEecCC
Confidence            999999999998764

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.62  E-value=1.5e-15  Score=106.96  Aligned_cols=93  Identities=25%  Similarity=0.430  Sum_probs=70.3

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE--ecceEEEeccCCCCCeEEEEEEEcCC
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR--IGSSLSISHVEESDSGVWNCVANNSE  297 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~~  297 (371)
                      .+|.+...+.... +..|+.+.|.|.+.|.|.+.+.|++++..+....++..  .++.|.|.++..+|+|.|+|.|.|..
T Consensus         9 ~~P~~~~~~~~~~-v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   87 (108)
T 3kvq_A            9 VAPTITGNLENQT-TSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVL   87 (108)
T ss_dssp             --CCCBSCCCCEE-EETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEEEEEC---
T ss_pred             CCCceecCCCCeE-EeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEEEEEEeCC
Confidence            6777777776666 99999999999999999999999999998877665553  34689999999999999999999999


Q ss_pred             CCceeEEEEEEecCcc
Q psy14542        298 GQDKMQLFIQYAHGKY  313 (371)
Q Consensus       298 g~~~~~~~l~v~~~p~  313 (371)
                      |.....+.|.|..+|.
T Consensus        88 g~~~~~~~l~V~~~~~  103 (108)
T 3kvq_A           88 GCAKVEAFFIIEGAQE  103 (108)
T ss_dssp             -CEEEEEEEEEEC---
T ss_pred             CceEEEEEEEEeCCCc
Confidence            9999999999988776

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.62  E-value=2.2e-15  Score=104.23  Aligned_cols=90  Identities=23%  Similarity=0.288  Sum_probs=76.7

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE---ec--ceEEEeccCCCCCeEEEEEEE
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR---IG--SSLSISHVEESDSGVWNCVAN  294 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~---~~--~~l~i~~~~~~d~G~Y~C~a~  294 (371)
                      .+|.+...+.... +..|+.+.|.|.+.|.|.+.+.|++++..+....++..   .+  ..|.|.++..+|+|.|+|.|.
T Consensus         4 ~~P~~~~~~~~~~-v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   82 (99)
T 1g1c_A            4 EAPKIFERIQSQT-VGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAI   82 (99)
T ss_dssp             EEEEEEECCCCEE-EETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCceEecCcceE-EcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEE
Confidence            4566666666666 99999999999999999999999999998887766542   22  379999999999999999999


Q ss_pred             cCCCCceeEEEEEEec
Q psy14542        295 NSEGQDKMQLFIQYAH  310 (371)
Q Consensus       295 n~~g~~~~~~~l~v~~  310 (371)
                      |..|.....+.|.|..
T Consensus        83 N~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           83 NIAGETSSHAFLLVQA   98 (99)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             ECCCcEEEEEEEEEec
Confidence            9999999999888864

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.62  E-value=2.9e-15  Score=102.58  Aligned_cols=87  Identities=21%  Similarity=0.424  Sum_probs=76.6

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      .+|.+...+.... +..|+.+.|.|.+.+.| +.+.|++++..+....++...++.|.|.++..+|+|.|+|.|.|..|.
T Consensus         8 ~pp~~~~~~~~~~-v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~   85 (95)
T 2ckn_A            8 QPWGVPVEVESLL-VHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSGS   85 (95)
T ss_dssp             CSCCBTTBBCCEE-ECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEECSSEEEESSCCGGGSEEEEEEEEETTEE
T ss_pred             CCCEEEcCcceEE-EcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEeCCEEEECCCChHHCEEEEEEeccCCCc
Confidence            4556666666666 99999999999999987 799999999999888888877889999999999999999999999999


Q ss_pred             ceeEEEEEE
Q psy14542        300 DKMQLFIQY  308 (371)
Q Consensus       300 ~~~~~~l~v  308 (371)
                      ....+.|.|
T Consensus        86 ~~~~~~l~V   94 (95)
T 2ckn_A           86 DTTYFSVNV   94 (95)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            888888876

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.61  E-value=2.9e-15  Score=104.44  Aligned_cols=92  Identities=20%  Similarity=0.321  Sum_probs=78.5

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEec----ceEEEeccCCCCCeEEEEEEEc
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG----SSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      .+|.+...+.... +..|+.+.|.|.+.|.|.|.+.|++++..+....++....    ..|.|.++..+|+|.|+|.|.|
T Consensus         7 ~~P~~~~~~~~~~-v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   85 (103)
T 3qp3_A            7 HAPRITLRMRSHR-VPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTN   85 (103)
T ss_dssp             EEEEEEECCCCEE-EETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeCCcceE-EeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEe
Confidence            5667766666666 9999999999999999999999999999988777665322    3699999999999999999999


Q ss_pred             CCCCceeEEEEEEecCc
Q psy14542        296 SEGQDKMQLFIQYAHGK  312 (371)
Q Consensus       296 ~~g~~~~~~~l~v~~~p  312 (371)
                      ..|.....+.|.|...+
T Consensus        86 ~~G~~~~~~~l~V~~~~  102 (103)
T 3qp3_A           86 YKGEASDYATLDVTGGD  102 (103)
T ss_dssp             TTEEEEEEEEEEEECC-
T ss_pred             CCCcEEEEEEEEEECCC
Confidence            99999999999887653

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.61  E-value=4e-14  Score=112.85  Aligned_cols=120  Identities=16%  Similarity=0.245  Sum_probs=81.7

Q ss_pred             CCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeCC--EE---Ee--------------eC----------CeeEEEEccC
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--LV---LR--------------RN----------SDEVLVLDRV   66 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~--~~---~~--------------~~----------~~~~l~i~~~   66 (371)
                      |.. +.+.+|++++|.|.+.... +...+.|+|+.  ..   +.              ..          ...+|.|.++
T Consensus         7 p~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (215)
T 1c5d_H            7 SGP-GLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSL   85 (215)
T ss_dssp             ECC-CEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSC
T ss_pred             CCC-eeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCC
Confidence            444 6899999999999765432 35779999842  11   10              00          2458999999


Q ss_pred             CcCCCeEEEEEEEcCCCC---eEEEEEEEEec---ceeeEec-CCceeeecCCcEEEEEEecCC-CCCceEEEeeCCEE
Q psy14542         67 QREDAGMYQCHVSADDDS---AQMSAQVILGG---ELVEIAS-SNQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLV  137 (371)
Q Consensus        67 ~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~---~~~~~~~-~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~  137 (371)
                      +.+|+|.|.|.+.+..+.   ......|.|..   .+|.+.. .+...+..|+.++|.|.+.+. |.+..+.|++++..
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~  164 (215)
T 1c5d_H           86 QTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALS  164 (215)
T ss_dssp             CGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTC
T ss_pred             CcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCcc
Confidence            999999999999876421   12335677763   2233332 223334689999999999887 55249999998764

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.61  E-value=2e-15  Score=104.15  Aligned_cols=83  Identities=19%  Similarity=0.385  Sum_probs=72.0

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEEEE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQCHV   78 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~   78 (371)
                      +|+|...|.. +.+.+|+.+.|.|.+ .+.|.+.+.|+|+|..+...           ...+|.|.+++.+|+|.|+|.|
T Consensus         5 PP~i~~~p~~-~~v~~G~~~~l~C~~-~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   82 (100)
T 3knb_A            5 PPKIEALPSD-ISIDEGKVLTVACAF-TGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSL   82 (100)
T ss_dssp             EEEECCCCSE-EEEETTSEEEEEEEE-EEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCCc-EEEeCCCeEEEEEEE-EEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEE
Confidence            5677777777 899999999999954 57889999999999987643           3468999999999999999999


Q ss_pred             EcCCCCeEEEEEEEEe
Q psy14542         79 SADDDSAQMSAQVILG   94 (371)
Q Consensus        79 ~~~~~~~~~~~~l~v~   94 (371)
                      .|..|.....+.|.|.
T Consensus        83 ~N~~G~~~~~~~l~V~   98 (100)
T 3knb_A           83 GNEFGSDSATVNIHIR   98 (100)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EECCCEEEEEEEEEEE
Confidence            9999988888888886

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.61  E-value=1.8e-14  Score=116.83  Aligned_cols=164  Identities=16%  Similarity=0.231  Sum_probs=99.1

Q ss_pred             EEEeccCcEEEEEEecCCCC---CCeeEEEeC--C---EEE---e------e---------------------CCeeEEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRL---SSAKAWLKD--G---LVL---R------R---------------------NSDEVLV   62 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~---~~~~~W~~~--~---~~~---~------~---------------------~~~~~l~   62 (371)
                      +.+.+|++++|.|.+.....   ...+.|||.  +   ..+   .      .                     ....+|.
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   89 (239)
T 3tv3_H           10 TLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVFLK   89 (239)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEEEE
T ss_pred             EEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEEEE
Confidence            68999999999997654321   347999982  1   111   1      0                     0345699


Q ss_pred             EccCCcCCCeEEEEEEEcCCC-----------C--eEEEEEEEEe---cceeeEe-cCCceeeecCCcEEEEEEecCC-C
Q psy14542         63 LDRVQREDAGMYQCHVSADDD-----------S--AQMSAQVILG---GELVEIA-SSNQVVVDVGHRIELHCRVSPK-R  124 (371)
Q Consensus        63 i~~~~~~d~G~Y~C~~~~~~~-----------~--~~~~~~l~v~---~~~~~~~-~~~~~~~~~g~~v~l~C~~~~~-~  124 (371)
                      |.+++.+|+|.|.|.+.+..+           .  ......|.|.   ...|.+. ..+...+..|+.++|.|.+.+. |
T Consensus        90 I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~~~~p  169 (239)
T 3tv3_H           90 LNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP  169 (239)
T ss_dssp             ECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEEEEEBS
T ss_pred             ECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEEeeEeC
Confidence            999999999999999976421           0  1112355554   1334443 2333334679999999999874 4


Q ss_pred             CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeee
Q psy14542        125 LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLL  204 (371)
Q Consensus       125 ~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~  204 (371)
                      .+..+.|++++..+.....      .......|         .+...  +.|.|......|  |.|+|.+.+. .+....
T Consensus       170 ~~~~v~W~~~g~~~~~~~~------~~~~~~~g---------~~~~~--s~L~i~~~~~~~--~~ytC~v~h~-~~~~~~  229 (239)
T 3tv3_H          170 EPVTVSWNSGALTSGVHTF------PAVLQSSG---------LYSLS--SVVTVPSSSLGT--QTYICNVNHK-PSNTKV  229 (239)
T ss_dssp             SCCEEEEGGGTBCTTEEEC------CCEECTTS---------CEEEE--EEEEEEGGGTTT--CCCEEEEEEG-GGTEEE
T ss_pred             CCeEEEEEECCccCceEec------CceECCCC---------CEEEE--EEEEEchhhcCC--CEEEEEEEEC-CCCceE
Confidence            4457899998863321100      00011223         33222  567777765543  8999999998 544333

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.60  E-value=2.1e-15  Score=102.97  Aligned_cols=88  Identities=18%  Similarity=0.249  Sum_probs=71.3

Q ss_pred             ccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCC--cccccCCceEEe--cceEEEeccCCCCCeEEEEEEEcC
Q psy14542        221 SAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQD--SPVEESDRIQRI--GSSLSISHVEESDSGVWNCVANNS  296 (371)
Q Consensus       221 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~a~n~  296 (371)
                      +|.+...+.... +..|+.+.|.|.+.|.|.|.+.|++++  ..+.........  .+.|.|.++..+|+|.|+|.|.|.
T Consensus         2 ~P~i~~~~~~~~-v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   80 (93)
T 1wit_A            2 KPKILTASRKIK-IKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNE   80 (93)
T ss_dssp             CCEECCCCCEEE-ECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEET
T ss_pred             CCeEEcCCCceE-EeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEcC
Confidence            344544445555 999999999999999999999999999  777655433322  257999999999999999999999


Q ss_pred             CCCceeEEEEEEe
Q psy14542        297 EGQDKMQLFIQYA  309 (371)
Q Consensus       297 ~g~~~~~~~l~v~  309 (371)
                      .|....++.|.|.
T Consensus        81 ~G~~~~~~~l~V~   93 (93)
T 1wit_A           81 LGEDEAIFEVIVQ   93 (93)
T ss_dssp             TEEEEEEEEEEEC
T ss_pred             CCeEEEEEEEEEC
Confidence            9998888888773

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.60  E-value=1.1e-14  Score=119.51  Aligned_cols=160  Identities=16%  Similarity=0.242  Sum_probs=101.6

Q ss_pred             CCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeCC--E---EEe---------------eC----------CeeEEEEcc
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--L---VLR---------------RN----------SDEVLVLDR   65 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~--~---~~~---------------~~----------~~~~l~i~~   65 (371)
                      |.. +.+.+|++++|.|.+.... ....+.|+|+.  .   .+.               ..          ...+|.|.+
T Consensus        13 p~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   91 (261)
T 2xqy_G           13 PGA-ELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSS   91 (261)
T ss_dssp             CSE-EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCC-EEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcC
Confidence            444 7899999999999665322 15779999852  1   110               00          246899999


Q ss_pred             CCcCCCeEEEEEEEcCCCCe---EEEEEEEEec---ceeeEec-CCceeeecCCcEEEEEEecCC-CCCceEEEeeCCEE
Q psy14542         66 VQREDAGMYQCHVSADDDSA---QMSAQVILGG---ELVEIAS-SNQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLV  137 (371)
Q Consensus        66 ~~~~d~G~Y~C~~~~~~~~~---~~~~~l~v~~---~~~~~~~-~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~  137 (371)
                      ++.+|+|.|.|.+.+..+..   .....|.|..   .+|.+.. .+...+..|+.++|.|.+.+. |.+..+.|++++..
T Consensus        92 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~  171 (261)
T 2xqy_G           92 LTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLS  171 (261)
T ss_dssp             CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTCC
T ss_pred             CCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCCCc
Confidence            99999999999999754211   1235677763   2233332 333334679999999999875 54349999998865


Q ss_pred             eeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        138 LRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      +......     ... .. |.|         ..  .+.|.|..... | .|.|+|.+.|.
T Consensus       172 ~~~~~~~-----~~~-~~-g~~---------~~--~s~L~i~~~~~-~-~g~YtC~v~n~  211 (261)
T 2xqy_G          172 SGVHTFP-----AVL-QS-DLY---------TL--SSSVTVTSSTW-P-SQSITCNVAHP  211 (261)
T ss_dssp             TTEEECC-----CEE-ET-TEE---------EE--EEEEEEETTTT-T-TSCCEEEEEEG
T ss_pred             CceEecC-----cee-cC-CcE---------EE--EEEEEEecccc-C-CCEEEEEEEEC
Confidence            4211000     000 01 222         21  25788877666 5 49999999987

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.59  E-value=6.9e-15  Score=120.37  Aligned_cols=182  Identities=15%  Similarity=0.195  Sum_probs=107.0

Q ss_pred             eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe----ccceEEEEEe
Q psy14542        106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML----SSGELIIHQV  181 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~----~~~~l~i~~~  181 (371)
                      ..+.+|++++|.|.+.. +. ..+.|++.....  .............     +......+++.+.    .+..|.|.++
T Consensus        13 v~v~~G~~v~L~C~~~~-~~-~~v~W~r~~~~~--~~~~l~~~~~~~~-----~~~~~~~~R~~~~~~~~~~~~L~I~~v   83 (252)
T 1oga_E           13 LFRKEGQNVTLSCEQNL-NH-DAMYWYRQDPGQ--GLRLIYYSQIVND-----FQKGDIAEGYSVSREKKESFPLTVTSA   83 (252)
T ss_dssp             EEEETTCCEEECCEECS-CC-SEEEEEEECTTC--CEEEEEEESSTTC-----CEECSSCTTEEECCSSTTBCCEEECSC
T ss_pred             EEEcCCCcEEEEEEeCC-CC-CEEEEEEECCCC--CeEEEEEEccCcc-----ccCCccCCcEEEEecCCCEEEEEECcC
Confidence            34589999999999854 34 799999853100  0001111111000     0000012233333    2358999999


Q ss_pred             ecCCccceeEEEeeccc--cceeeeeeccceeeeecch-hccccceeee-eeeeeeeecCCeEEEEEEeecC-CC-CceE
Q psy14542        182 DESDRYRSYQCRGVNKL--TGASLLSVNRGRLSLTENK-RLLSAAKMFE-KHRILNVKKDESVILPCSAQGN-PL-PTIK  255 (371)
Q Consensus       182 ~~~d~~g~y~C~~~~~~--~~~~~~~~~~~~l~v~~~~-~~~~p~~~~~-~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~  255 (371)
                      +.+| +|.|.|.+.+..  ........   .+.|.... ...+|.+... +.... +..|+.+.|.|.+.+. |. +.+.
T Consensus        84 ~~~D-~G~Y~C~~~~~~~~~~~~~~~~---~l~V~~~~~~~~~P~v~~~~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~  158 (252)
T 1oga_E           84 QKNP-TAFYLCASSSRSSYEQYFGPGT---RLTVTEDLKNVFPPEVAVFEPSEAE-ISHTQKATLVCLATGFYPDHVELS  158 (252)
T ss_dssp             CSCC-CEEEEEEEESSTTSCCEECCCE---EEEEESCGGGCBCCEEEEECCCHHH-HHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred             Chhh-CEEEEEEEecCCccceeECCCE---EEEEecccCCCCCCeEEEECCChhh-hccCCceEEEEEEeeEcCCCcEEE
Confidence            9999 999999998751  01111122   45555321 1135555443 22222 4578999999999985 65 4899


Q ss_pred             EEeCCcccccCCceE---------------EecceEEEeccCCC-CCeEEEEEEEcCCCCce
Q psy14542        256 WYKQDSPVEESDRIQ---------------RIGSSLSISHVEES-DSGVWNCVANNSEGQDK  301 (371)
Q Consensus       256 W~~~~~~~~~~~~~~---------------~~~~~l~i~~~~~~-d~G~Y~C~a~n~~g~~~  301 (371)
                      |+++|..+..+....               ...+.|.|...... |.|.|+|.|.|......
T Consensus       159 W~~~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~~  220 (252)
T 1oga_E          159 WWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  220 (252)
T ss_dssp             EEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             EEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCC
Confidence            999998765432110               11134777766654 67899999999876544

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.59  E-value=4.7e-14  Score=111.58  Aligned_cols=122  Identities=17%  Similarity=0.255  Sum_probs=79.1

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC-----EEE--------eeC-----------CeeEEEEccCCc
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG-----LVL--------RRN-----------SDEVLVLDRVQR   68 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~-----~~~--------~~~-----------~~~~l~i~~~~~   68 (371)
                      +...|.. +.+.+|++++|.|......  ..+.|+|..     ..+        ...           ...+|.|.+++.
T Consensus         4 v~q~p~~-v~v~~G~~v~L~C~~~~~~--~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~   80 (207)
T 1ypz_E            4 VEQSPSA-LSLHEGTDSALRCNFTTTM--RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQL   80 (207)
T ss_dssp             EEESCSE-EEEETTCCEEEEEEESSCC--SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCG
T ss_pred             cEECCCe-EEEccCCcEEEEEEEeCCC--eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCH
Confidence            4444555 8899999999999765432  479999832     121        111           346899999999


Q ss_pred             CCCeEEEEEEEcCCC---------Ce--EEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCC-CceEEEeeCCE
Q psy14542         69 EDAGMYQCHVSADDD---------SA--QMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGL  136 (371)
Q Consensus        69 ~d~G~Y~C~~~~~~~---------~~--~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~  136 (371)
                      +|+|.|.|.+.+..+         ..  .....|.|.. .......|...+..+ .+.|.|.+.+..+ ++.++|+++ .
T Consensus        81 ~D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~-~~~~~~~P~v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~-~  157 (207)
T 1ypz_E           81 EDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEP-KSQPPAKPSVFIMKN-GTNVACLVKDFYPKEVTISLRSS-K  157 (207)
T ss_dssp             GGCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEEC-CCCCCCCCEEEEEEE-TTEEEEEEEEESSSCCEEEEECS-S
T ss_pred             HHCEEEEEEEecCCcccccccccceeeecCccEEEEcc-CCCCCCCCeEEEeCC-CCeEEEEEeeEeCCCeEEEEecC-C
Confidence            999999999987632         11  1235677762 111122233333222 3799999987644 379999998 6


Q ss_pred             Eeee
Q psy14542        137 VLRR  140 (371)
Q Consensus       137 ~~~~  140 (371)
                      .+..
T Consensus       158 ~l~~  161 (207)
T 1ypz_E          158 KIVE  161 (207)
T ss_dssp             EEEE
T ss_pred             cccC
Confidence            6543

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.59  E-value=7.8e-15  Score=118.99  Aligned_cols=180  Identities=14%  Similarity=0.174  Sum_probs=104.8

Q ss_pred             eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe----ccceEEEEEe
Q psy14542        106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML----SSGELIIHQV  181 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~----~~~~l~i~~~  181 (371)
                      ..+.+|+.++|.|.+.. +. ..+.|+|.+...  .....+......    ..+ .....+++.+.    .+..|.|.++
T Consensus         9 v~v~~G~~v~L~C~~~~-~~-~~v~W~r~~~~~--~~~~l~~~~~~~----~~~-~~~~~~R~~~~~~~~~~~~L~I~~v   79 (238)
T 1bec_A            9 KVAVTGGKVTLSCQQTN-NH-NNMYWYRQDTGH--GLRLIHYSYGAG----STE-KGDIPDGYKASRPSQEQFSLILELA   79 (238)
T ss_dssp             EEEETTCCEEEEEEESS-CC-SEEEEEEECTTS--CEEEEEEEEETT----EEE-ECSCCTTCEEECCSSSEEEEEESSC
T ss_pred             eEEeCCCcEEEEEEeCC-CC-ceEEEEEECCCC--CEEEEEEEeCCC----ccc-CCCccceEEEEecCCCEEEEEEecC
Confidence            34589999999999854 34 799999854100  000111111100    000 00002344432    2357999999


Q ss_pred             ecCCccceeEEEeeccccc-----eeeeeeccceeeeecch-hccccceeeee-eeeeeeecCCeEEEEEEeecC-CCC-
Q psy14542        182 DESDRYRSYQCRGVNKLTG-----ASLLSVNRGRLSLTENK-RLLSAAKMFEK-HRILNVKKDESVILPCSAQGN-PLP-  252 (371)
Q Consensus       182 ~~~d~~g~y~C~~~~~~~~-----~~~~~~~~~~l~v~~~~-~~~~p~~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~~-  252 (371)
                      +.+| +|.|.|.+.+. .+     ......   .|.|.... ...+|.+.... .... +..|+.+.|.|.+.|. |.+ 
T Consensus        80 ~~~D-~G~Y~C~~~~~-~~~~~~~~~~~~~---~l~V~~~~~~~~~P~v~~~~~~~~~-~~~g~~~~L~C~~~g~~P~~~  153 (238)
T 1bec_A           80 TPSQ-TSVYFCASGGG-RGSYAEQFFGPGT---RLTVLEDLRQVTPPKVSLFEPSKAE-IANKQKATLVCLARGFFPDHV  153 (238)
T ss_dssp             CGGG-CEEEEEEEESC-TTCGGGCEECCCE---EEEEESCGGGCBCCEEEEECCCSTT-CSSSCSCSEEEEEEEEBSCCE
T ss_pred             Cccc-CEEEEEEEecC-CCCccccccCCCE---EEEEeccCCCCCCCceEEECCChHH-cccCCceEEEEEEeeEeCCCc
Confidence            9999 99999999876 21     111122   56665321 11345554432 2223 5679999999999985 655 


Q ss_pred             ceEEEeCCcccccCCce-----EEecce------EEEeccCCCC-CeEEEEEEEcCCCCc
Q psy14542        253 TIKWYKQDSPVEESDRI-----QRIGSS------LSISHVEESD-SGVWNCVANNSEGQD  300 (371)
Q Consensus       253 ~v~W~~~~~~~~~~~~~-----~~~~~~------l~i~~~~~~d-~G~Y~C~a~n~~g~~  300 (371)
                      .+.|+++|..+..+.+.     ...++.      |.|......| .|.|+|.|.|.....
T Consensus       154 ~v~W~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~  213 (238)
T 1bec_A          154 ELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSE  213 (238)
T ss_dssp             EEEEEETTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCCCT
T ss_pred             EEEEEECCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCCCC
Confidence            89999999877654221     122333      3343333334 678999999975443

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.59  E-value=2.5e-13  Score=106.95  Aligned_cols=155  Identities=15%  Similarity=0.227  Sum_probs=107.5

Q ss_pred             eeecCCcEEEEEEecCCCC---CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeec
Q psy14542        107 VVDVGHRIELHCRVSPKRL---SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDE  183 (371)
Q Consensus       107 ~~~~g~~v~l~C~~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~  183 (371)
                      .+..|+.++|.|.+.+..+   +..|+|+|++..+....                               ..|.+..+..
T Consensus        13 ~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGaT-------------------------------~tLti~s~t~   61 (304)
T 3shs_A           13 CFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT-------------------------------ATLTVADATS   61 (304)
T ss_dssp             SBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCCS-------------------------------SEEEESSCCG
T ss_pred             cccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCCc-------------------------------ceEEeeeccc
Confidence            3479999999999976533   36899999998765431                               4677888888


Q ss_pred             CCccceeEEEeeccccceeeeeeccceeeeecchhccccceee-eeeeeeeeecCCeEEEEEEe--ec-CC-----CCce
Q psy14542        184 SDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF-EKHRILNVKKDESVILPCSA--QG-NP-----LPTI  254 (371)
Q Consensus       184 ~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~-~~~~~~~~~~g~~~~l~C~~--~~-~p-----~~~v  254 (371)
                      .| +|.|+|.+.+. .+....+.   .+.|...   ..+.+.. .+.... +..+..+.|.+.+  .| .+     ..++
T Consensus        62 sd-SG~YqCvVTDa-~Gcs~tSs---~VtVT~~---a~l~i~it~P~s~~-vssg~sVtL~aTVt~SGGtppA~~~~yTY  132 (304)
T 3shs_A           62 EN-AGSYKVTVQDT-DTMTSVES---EVFLMEE---AELIVNITEPQHFY-VSSQTDVELHATVKFSGGKTPADNYELHY  132 (304)
T ss_dssp             GG-CEEEEEEEEET-TTCCEEEC---CCEEECB---CCEEEEESSCSEEE-ECSSCCEEEEEEEEETTSCCSSTTCCCEE
T ss_pred             cC-CeEEEEEEEEC-CCCeeeee---eEEEecc---CceeEEecCCCcee-ccCCCeEEEEEEEeccCCCCcccCCCcee
Confidence            99 99999999987 66544443   4455432   1122222 233333 5567888998887  43 44     4689


Q ss_pred             EEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCc--eeEEEEEE
Q psy14542        255 KWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQY  308 (371)
Q Consensus       255 ~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v  308 (371)
                      +|++++..+...       ..|.+......++|.|+|.+.|..+..  +.++.+.+
T Consensus       133 QWyKngt~IsgA-------q~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~  181 (304)
T 3shs_A          133 SWSKGEDVIDTT-------QDITIQEFTADKNGVYTVKVWGESEDSAASASTKIML  181 (304)
T ss_dssp             EEEETTEEEESS-------SEEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEE
T ss_pred             EEeeCCeEccCc-------cccceeeEEecCCeEEEEEEEcCCCCcccccceEEEE
Confidence            999999866432       357777888899999999999997753  34444444

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.59  E-value=2.2e-14  Score=115.88  Aligned_cols=166  Identities=15%  Similarity=0.205  Sum_probs=96.9

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCee--EEEeCC-----EEEe------e---------------------CCeeEEEEcc
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAK--AWLKDG-----LVLR------R---------------------NSDEVLVLDR   65 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~--~W~~~~-----~~~~------~---------------------~~~~~l~i~~   65 (371)
                      +.+.+|++++|.|..... .....+  .|+|..     ..+.      .                     ....+|.|.+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   89 (232)
T 3qhz_H           10 ALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMTN   89 (232)
T ss_dssp             SEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             EEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEECc
Confidence            679999999999976532 122334  999721     1110      0                     0345799999


Q ss_pred             CCcCCCeEEEEEEEcCCC--------CeEEEEEEEEec---ceeeEe-cCCceeeecCCcEEEEEEecCCCC-CceEEEe
Q psy14542         66 VQREDAGMYQCHVSADDD--------SAQMSAQVILGG---ELVEIA-SSNQVVVDVGHRIELHCRVSPKRL-SSAKAWL  132 (371)
Q Consensus        66 ~~~~d~G~Y~C~~~~~~~--------~~~~~~~l~v~~---~~~~~~-~~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~  132 (371)
                      ++.+|+|.|.|.+.+..+        .......|.|..   .+|.+. ..+...+..|+.++|.|.+.+.++ +..+.|+
T Consensus        90 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W~  169 (232)
T 3qhz_H           90 MDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN  169 (232)
T ss_dssp             CCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCEEEEG
T ss_pred             CChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeEEEEE
Confidence            999999999999986521        112234566641   334444 334444467999999999987543 4678899


Q ss_pred             eCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeee
Q psy14542        133 KDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSV  206 (371)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~  206 (371)
                      +++..+.....      .......|         .+...  +.|.|......|  |.|+|.+.+. .+......
T Consensus       170 ~~g~~~~~~~~------~~~~~~~g---------~~~~~--s~L~i~~~~~~~--g~ytC~v~~~-~~~~~~~~  223 (232)
T 3qhz_H          170 SGALTSGVHTF------PAVLQSSG---------LYSLS--SVVTVPSSSLGT--QTYICNVNHK-PSNTKVDK  223 (232)
T ss_dssp             GGTBCTTEEEC------CCEECTTS---------CEEEE--EEEEEEGGGGGT--CCCEEEEEEG-GGTEEEEE
T ss_pred             ECCEecceeec------cceeCCCC---------CEEEE--EEEEEchhhcCC--CEEEEEEEeC-CCCccEEE
Confidence            98853321100      00011122         22222  567777765544  8999999998 54444433

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.59  E-value=4.7e-15  Score=102.74  Aligned_cols=92  Identities=20%  Similarity=0.345  Sum_probs=75.8

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceE---Eec--ceEEEeccCCCCCeEEEEEEE
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ---RIG--SSLSISHVEESDSGVWNCVAN  294 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~---~~~--~~l~i~~~~~~d~G~Y~C~a~  294 (371)
                      .+|.+...+.... +..|+.+.|.|.+.|.|.+.+.|++++..+....+..   ..+  ..|.|.++..+|+|.|+|.|.
T Consensus         4 ~~P~~~~~p~~~~-~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   82 (100)
T 2kdg_A            4 GPPRFIQVPENMS-IDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAK   82 (100)
T ss_dssp             EEEECCCCCCCEE-EETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCeEEeCCCCEE-ecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEE
Confidence            4566666666666 8999999999999999999999999998877664322   222  279999999999999999999


Q ss_pred             cCCCCceeEEEEEEecCc
Q psy14542        295 NSEGQDKMQLFIQYAHGK  312 (371)
Q Consensus       295 n~~g~~~~~~~l~v~~~p  312 (371)
                      |..|....++.|.|..++
T Consensus        83 n~~g~~~~~~~l~V~~~e  100 (100)
T 2kdg_A           83 NRAGEATFTVQLDVLAKE  100 (100)
T ss_dssp             ETTEEEEEEEEEEEECCC
T ss_pred             cCCCeEEEEEEEEEEecC
Confidence            999999999999887653

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.59  E-value=8.7e-15  Score=104.17  Aligned_cols=93  Identities=22%  Similarity=0.340  Sum_probs=79.5

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCccccc-CCceEEe--c-c--eEEEeccCCCCCeEEEEEE
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEE-SDRIQRI--G-S--SLSISHVEESDSGVWNCVA  293 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~--~-~--~l~i~~~~~~d~G~Y~C~a  293 (371)
                      .+|.+...+.... +..|+.+.|.|.+.|.|.+.+.|++++..+.. ..++...  + +  +|.|.++..+|+|.|+|.|
T Consensus        14 ~~p~f~~~p~~~~-v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   92 (116)
T 2kkq_A           14 RAPMFIYKPQSKK-VLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSA   92 (116)
T ss_dssp             BCCCBSSCCCCEE-EETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEE
T ss_pred             CCCeEEeCCCcEE-EeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEE
Confidence            5677777777776 99999999999999999999999999988774 3455422  2 2  7999999999999999999


Q ss_pred             EcCCCCceeEEEEEEecCcc
Q psy14542        294 NNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       294 ~n~~g~~~~~~~l~v~~~p~  313 (371)
                      .|..|.....+.|.|..+|.
T Consensus        93 ~N~~G~~~~~~~l~V~~~p~  112 (116)
T 2kkq_A           93 VNEAGVTTCNTRLDVTARPN  112 (116)
T ss_dssp             EETTEEEEEEEEEEEECCSC
T ss_pred             EcCCCeEEEEEEEEEeCCCC
Confidence            99999999999999998776

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.59  E-value=3e-16  Score=125.08  Aligned_cols=171  Identities=12%  Similarity=0.142  Sum_probs=106.2

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCC--CCeeEEEeCCEEEee--------C------CeeEEEEccCCcCCCeE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRL--SSAKAWLKDGLVLRR--------N------SDEVLVLDRVQREDAGM   73 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~--~~~~~W~~~~~~~~~--------~------~~~~l~i~~~~~~d~G~   73 (371)
                      +|.+.+.++....+.+|+.++|.|.+....+  ...+.| +++ .+..        .      ....|.|.+++.+|+|.
T Consensus         3 ~p~v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~~~-~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~   80 (214)
T 1ow0_A            3 HPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-TPS-SGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKT   80 (214)
T ss_dssp             CCCCEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-SSC-SSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCE
T ss_pred             CCEEEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE-cCC-CCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCe
Confidence            4556555333367899999999997655444  268999 532 2110        0      23478889999999999


Q ss_pred             EEEEEEcCCCCeEEEEEEEE--ecceeeEecCCc--eeeecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeEEEE
Q psy14542         74 YQCHVSADDDSAQMSAQVIL--GGELVEIASSNQ--VVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEVLVL  148 (371)
Q Consensus        74 Y~C~~~~~~~~~~~~~~l~v--~~~~~~~~~~~~--~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~  148 (371)
                      |+|.+.+..+.......+.+  ...+|.+...+.  ..+..|+.++|.|.+.+.++ ++.++|+++|..+.......   
T Consensus        81 Y~C~~~~~~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~---  157 (214)
T 1ow0_A           81 FTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLT---  157 (214)
T ss_dssp             EEEEECCSSCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEE---
T ss_pred             EEEEEecCCCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceee---
Confidence            99999987664433333321  113444432221  22357889999999988543 36999999998876542100   


Q ss_pred             cccCcC---CCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        149 DRVQRE---DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       149 ~~~~~~---~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      ......   ..|.|         .+.  +.|.+......+ .|.|+|.+.|.
T Consensus       158 ~~~~~~~~~~dgt~---------~~~--s~l~v~~~~~~~-~~~ytC~v~n~  197 (214)
T 1ow0_A          158 WASRQEPSQGTTTF---------AVT--SILRVAAEDWKK-GDTFSCMVGHE  197 (214)
T ss_dssp             CCCEECSCSSSCCE---------EEE--EEEEEEHHHHHH-TCCEEEEEECT
T ss_pred             cCCcccccCCCCcE---------EEE--EEEEECHHHccC-CCEEEEEEECC
Confidence            001111   23333         222  456666555556 89999999987

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=6e-15  Score=101.98  Aligned_cols=89  Identities=21%  Similarity=0.411  Sum_probs=74.7

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE-ecceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR-IGSSLSISHVEESDSGVWNCVANNSEG  298 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g  298 (371)
                      .+|.+...+.... +..|+.+.|.|.+.|.|.|.+.|++++..+........ ....|.|.++..+|+|.|+|.|.|..|
T Consensus        10 ~~P~~~~~~~~~~-v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g   88 (99)
T 2yr3_A           10 VAPSFSSVLKDCA-VIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAENALG   88 (99)
T ss_dssp             EEEEEEECCCCEE-ECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEEETTEEEEEECSCCTTCCBCEEEEEECSSC
T ss_pred             cCCceeecCCCCE-EeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEeeCCeEEEEECCCChhhCEEEEEEEEECCC
Confidence            5677776666666 99999999999999999999999999998876544332 235799999999999999999999999


Q ss_pred             CceeEEEEEEe
Q psy14542        299 QDKMQLFIQYA  309 (371)
Q Consensus       299 ~~~~~~~l~v~  309 (371)
                      ....++.|.|+
T Consensus        89 ~~~~~~~l~V~   99 (99)
T 2yr3_A           89 QVSCSAWVTVH   99 (99)
T ss_dssp             EEEEECCEEEC
T ss_pred             eEEEEEEEEEC
Confidence            98888877763

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=7.6e-15  Score=105.03  Aligned_cols=93  Identities=25%  Similarity=0.397  Sum_probs=79.5

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCccccc-CCceE-EecceEEEeccCCCCCeEEEEEEEcCC
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEE-SDRIQ-RIGSSLSISHVEESDSGVWNCVANNSE  297 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~  297 (371)
                      .+|.+...+.... +..|+.+.|.|.+.|.|.+.+.|++++..+.. ..++. ..+++|.|.++..+|+|.|+|.|.|..
T Consensus         7 ~pP~i~~~p~~~~-v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   85 (118)
T 2eo9_A            7 GPPVIRQGPVNQT-VAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPS   85 (118)
T ss_dssp             CSCCCSBCCCCEE-EETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETTEEEEESCCGGGCCCEEEEEECSS
T ss_pred             CCCEEEcCCCCEE-EcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCCEEEEccCCcCCCEEEEEEEEcCC
Confidence            5667766666666 99999999999999999999999999988864 34443 456789999999999999999999999


Q ss_pred             CCceeEEEEEEecCcc
Q psy14542        298 GQDKMQLFIQYAHGKY  313 (371)
Q Consensus       298 g~~~~~~~l~v~~~p~  313 (371)
                      |.....+.|.|..++.
T Consensus        86 g~~~~~~~l~V~~~~~  101 (118)
T 2eo9_A           86 GEATWSAYIEVQEFGV  101 (118)
T ss_dssp             CEEEEECCEEEECCSC
T ss_pred             CcEEEEEEEEEEeCCC
Confidence            9998889999987765

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.58  E-value=5.1e-14  Score=113.44  Aligned_cols=182  Identities=12%  Similarity=0.130  Sum_probs=104.3

Q ss_pred             eeeecCCcEEEEEEecCC--CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEEE
Q psy14542        106 VVVDVGHRIELHCRVSPK--RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELII  178 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~i  178 (371)
                      ..+.+|++++|.|.+.+.  +. ..+.|++....  ......+.......    .+.....++++.+..     +..|.|
T Consensus        11 v~~~~G~~v~L~C~~~~~~~~~-~~v~W~r~~~~--~~~~~l~~~~~~~~----~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (230)
T 1ypz_F           11 ISRPRDETAQISCKVFIESFRS-VTIHWYRQKPN--QGLEFLLYVLATPT----HIFLDKEYKKMEASKNPSASTSILTI   83 (230)
T ss_dssp             EEEETTSCEEEEEEECCGGGGG-CCEEEEEECTT--TCCEEEEEECSSCC----CEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred             EEEeCCCcEEEEEEeeccccCc-cEEEEEEECCC--CCCEEEEEEecCCe----eecCcccCCeEEEEEcCCCCEEEEEE
Confidence            345899999999999764  33 68999984310  00011111111000    000000123444332     247999


Q ss_pred             EEeecCCccceeEEEeecc---ccceeeeeeccceeeeecchh----ccccceeee-eeeeeeeecCCeEEEEEEeecC-
Q psy14542        179 HQVDESDRYRSYQCRGVNK---LTGASLLSVNRGRLSLTENKR----LLSAAKMFE-KHRILNVKKDESVILPCSAQGN-  249 (371)
Q Consensus       179 ~~~~~~d~~g~y~C~~~~~---~~~~~~~~~~~~~l~v~~~~~----~~~p~~~~~-~~~~~~~~~g~~~~l~C~~~~~-  249 (371)
                      .+++.+| +|.|.|.+.+.   .........   .|.|.....    ..+|..... +.... +..|+.++|.|.+.+. 
T Consensus        84 ~~v~~~D-~G~Y~C~~~~~~~~~~~~~~~~~---~L~V~~~~~~l~~~~~p~~~v~~p~~~~-v~~g~~~~L~C~~~g~~  158 (230)
T 1ypz_F           84 YSLEEED-EAIYYCSYGEGSSGFHKVFAEGT---KLIVIPSDKRLDADISPKPTIFLPSVAE-TNLHKTGTYLCLLEAFF  158 (230)
T ss_dssp             CSCCGGG-CSEEEEEECCTTTCCCCEECSCE---EEEEECCCTTCCSCCSCCCCEECCCHHH-HHHHSCEEEEEEEEEES
T ss_pred             CcCChhh-CEEEEEEEECCCCCcccccCCCE---EEEEecccccCcccCCCCceEECCCchh-hccCCcceEEEEEeeec
Confidence            9999999 99999999873   010111122   566652110    012222221 22222 5578999999999875 


Q ss_pred             CC-CceEEEe-CCcccccCC--ceE------EecceEEEeccCCCCCeEEEEEEEcCCCCce
Q psy14542        250 PL-PTIKWYK-QDSPVEESD--RIQ------RIGSSLSISHVEESDSGVWNCVANNSEGQDK  301 (371)
Q Consensus       250 p~-~~v~W~~-~~~~~~~~~--~~~------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  301 (371)
                      |. +.+.|++ +|..+....  ...      ...+.|.|..... + |.|+|.|.|..+...
T Consensus       159 P~~~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~~  218 (230)
T 1ypz_F          159 PDVIRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKGG  218 (230)
T ss_dssp             SCCCEEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTTT
T ss_pred             CCCeEEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCCc
Confidence            75 5899999 777654321  111      1224688887775 4 999999999887643

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.58  E-value=3.8e-14  Score=116.18  Aligned_cols=193  Identities=11%  Similarity=0.157  Sum_probs=108.1

Q ss_pred             ceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEEE
Q psy14542        105 QVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELII  178 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~i  178 (371)
                      ...+.+|++++|.|.+.+.. ....+.|++....  ......+......   ...+......+++.+..     +..|.|
T Consensus        32 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~R~~~~~~~~~~~~sL~I  106 (256)
T 3sob_H           32 GGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPG--KGLEWVGWITPYG---GYTNYADSVKGRFTISADTSKNTAYLQM  106 (256)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTT--CCCEEEEEEETTT---TEEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred             cEEEcCCCCEEEEEEeeccccCCCEEEEEEECCC--CCcEEEEEEecCC---CceecCCCCCCcEEEEEeCCCCEEEEEE
Confidence            34468999999999997532 2268999974210  0011111111100   00000000012333332     235999


Q ss_pred             EEeecCCccceeEEEeeccccc--------eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-C
Q psy14542        179 HQVDESDRYRSYQCRGVNKLTG--------ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-N  249 (371)
Q Consensus       179 ~~~~~~d~~g~y~C~~~~~~~~--------~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~  249 (371)
                      .+++.+| +|.|.|.+.+. .+        ..........+.|.... ..+|.+........ +..|+.++|.|.+.+ .
T Consensus       107 ~~v~~~D-sG~Y~C~~~~~-~~~~~~~~~~~~~~~~~~~~l~V~~~~-~~~P~i~~~~~~~~-~~~g~~v~L~C~~~~~~  182 (256)
T 3sob_H          107 NSLRAED-TAVYYCARGSG-HVNAVKNYGYVMDYWGQGTLVTVSSAS-TKGPSVFPLAPSSK-STSGGTAALGCLVKDYF  182 (256)
T ss_dssp             CSCCGGG-CEEEEEEEESS-CTTCSSCCTTSEEEECCCEEEEECSSC-CBCCEEEEECCC------TTEEEEEEEEEEEB
T ss_pred             CCCCccc-CEEEEEEEecC-CCccccccccceeEECCCEEEEEecCC-CCCCEEEEECCCcc-cccCCcEEEEEEEEEEE
Confidence            9999999 99999999864 20        00111111155554321 14455543333333 678999999999987 4


Q ss_pred             C-CCceEEEeCCcccccC----------CceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542        250 P-LPTIKWYKQDSPVEES----------DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA  309 (371)
Q Consensus       250 p-~~~v~W~~~~~~~~~~----------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  309 (371)
                      | .+.+.|  ++..+...          +......+.|.|.....+| |.|+|.+.|..+.......|.+.
T Consensus       183 p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~~  250 (256)
T 3sob_H          183 PEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPK  250 (256)
T ss_dssp             SSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred             CCCeEEEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEeccc
Confidence            5 356999  55544321          0111122468899999999 99999999998887666666554

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.58  E-value=6.6e-15  Score=102.29  Aligned_cols=80  Identities=21%  Similarity=0.410  Sum_probs=68.8

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceE---------EecceEEEeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ---------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL  304 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  304 (371)
                      ...+..+.|.|.+.|.|.|.++|+++|..+..+.+..         ...+.|.|.++..+|+|.|+|.|.|..|....++
T Consensus        13 ~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~   92 (103)
T 1wwb_X           13 PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQI   92 (103)
T ss_dssp             CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             ceECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEE
Confidence            3457889999999999999999999999888775531         1223599999999999999999999999999999


Q ss_pred             EEEEecCcc
Q psy14542        305 FIQYAHGKY  313 (371)
Q Consensus       305 ~l~v~~~p~  313 (371)
                      .|.|..+|.
T Consensus        93 ~l~V~~~P~  101 (103)
T 1wwb_X           93 SAHFMGWPG  101 (103)
T ss_dssp             EECCSCCCC
T ss_pred             EEEECCCCC
Confidence            999988775

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.58  E-value=6.1e-14  Score=107.77  Aligned_cols=166  Identities=15%  Similarity=0.115  Sum_probs=110.4

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe--CCEEEeeC-CeeEEEEccCCcCCCeEEEEEEEcCCCCeE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK--DGLVLRRN-SDEVLVLDRVQREDAGMYQCHVSADDDSAQ   86 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~--~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   86 (371)
                      ++.+.+.|+. ..|.+|+++.|.|.+.-..+ ..+.|.-  ++.....+ ....+.|.+++ +|.+.|.|.+........
T Consensus         2 ~f~v~v~P~~-~~V~~G~Sv~l~Cs~~c~~p-~~~~~~t~l~~~~~~~g~~~~~~~ls~vs-~d~~~~~C~~~c~~~~~~   78 (196)
T 3bn3_B            2 PFWADLQPRV-AFVERGGSLWLNCSTNCPRP-ERGGLETSLRRNGTQRGLRWLARQLVDIR-EPETQPVCFFRCARRTLQ   78 (196)
T ss_dssp             CSCEEEESSE-EEEETTEEEEEEEEECCSSC-SEEEEECSSEEEEEEEETTEEEEEEEEEC-SSEECCEEEEEETTEEEE
T ss_pred             CcEEEEcCCC-cEEcCCCeEEEEEeCCCCCC-CccEEEEccCCeeEccccCceEEEEEEEc-cCCCceEEEEECCCCceE
Confidence            5678899988 88999999999997653332 2577743  22233322 34458999998 888889999988666678


Q ss_pred             EEEEEEEecceeeEecCCc-eeeecCCcEEEEEEecCCCCCc--eEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEE
Q psy14542         87 MSAQVILGGELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSS--AKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHI  163 (371)
Q Consensus        87 ~~~~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~  163 (371)
                      +.+.|.|+..|..+...+. ..+.+|+.++|.|.+.+..+..  .++|++++..+.....     .    ++.       
T Consensus        79 ~~v~l~Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~-----~----~~~-------  142 (196)
T 3bn3_B           79 ARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSF-----A----GEP-------  142 (196)
T ss_dssp             EECEEEEEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEEC-----T----TSC-------
T ss_pred             EEEEEEEecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeecccc-----c----ccc-------
Confidence            8899999854444444333 2368999999999998875533  4899999998864320     0    000       


Q ss_pred             eCCceeEeccceEEEEEeecCCccceeEEEeeccc
Q psy14542        164 EDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKL  198 (371)
Q Consensus       164 ~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~  198 (371)
                       .....  ....+.+.... +|+...|+|.|.+..
T Consensus       143 -~~~~~--~t~~~~~~~~r-~D~g~~~sC~A~l~l  173 (196)
T 3bn3_B          143 -PRARG--AVLTATVLARR-EDHGANFSCRAELDL  173 (196)
T ss_dssp             -TTCCC--EEEEEEEECCG-GGTTCEEEEEEEEEC
T ss_pred             -ccccc--eeEEEEEeeee-ccCCCeEEEEEEccC
Confidence             00000  11345555444 553779999999873

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.58  E-value=7.4e-14  Score=112.16  Aligned_cols=191  Identities=13%  Similarity=0.164  Sum_probs=108.5

Q ss_pred             CCceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceE
Q psy14542        103 SNQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGEL  176 (371)
Q Consensus       103 ~~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l  176 (371)
                      .+...+.+|++++|.|.+.+.. ....+.|++....  ......+.+....   ...+......+++.+..     +..|
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~--~~~~~~~~~~~~~---~~~~~~~~~~~R~~~~~~~~~~~~sL   81 (226)
T 3mlr_H            7 SGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPG--KGLEWIGIIYPDD---SDAHYSPSFEGQVTMSVDKSISTAYL   81 (226)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTT--SCCEEEEEEETTT---TEEEECTTTBTTBEEEEEGGGTEEEE
T ss_pred             CCCEEEecCCCEEEEEEecCccccCCEEEEEEECCC--CCcEEEEEEecCC---CccccCcccCCcEEEEecCCCCEEEE
Confidence            3344568999999999997532 2268999984310  0111111111100   00000000012343332     2459


Q ss_pred             EEEEeecCCccceeEEEeeccccc-----e-eeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-C
Q psy14542        177 IIHQVDESDRYRSYQCRGVNKLTG-----A-SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-N  249 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~~~~~~-----~-~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~  249 (371)
                      .|.+++.+| +|.|.|.+.+. .+     . ....-....+.|.... ..+|.+........ +..|+.+.|.|.+.+ .
T Consensus        82 ~I~~v~~~D-sG~Y~C~~~~~-~~~~~~~~~~~~~~~~t~l~V~~~~-~~~P~i~~~~~~~~-~~~g~~~~l~C~~~~~~  157 (226)
T 3mlr_H           82 QWTTLQASD-TGKYFCTRLYL-FEGAQSSNAFDLWGQGTMILVSSGT-TKGPSVFPLAPSSK-STSGGTAALGCLVKDYF  157 (226)
T ss_dssp             EESSCCGGG-CEEEEEEEEEE-EESSSEEEEEEEECCCEEEEECCCC-CBCCEEEEEEEEEC-STTSSEEEEEEEEEEEB
T ss_pred             EECCCCccc-CEEEEEeEccC-CCcccccchhhhhCCccEEeeccCC-CCCCcEEEecCccc-ccCCCCEEEEEEEEEEE
Confidence            999999999 99999999765 21     0 1111111245554321 14555554333333 668999999999987 4


Q ss_pred             C-CCceEEEeCCcccccC----------CceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEE
Q psy14542        250 P-LPTIKWYKQDSPVEES----------DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLF  305 (371)
Q Consensus       250 p-~~~v~W~~~~~~~~~~----------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  305 (371)
                      | .+.+.|  ++..+..+          +......+.|.|.....+| |.|+|.|.|..+.......
T Consensus       158 p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~  221 (226)
T 3mlr_H          158 PEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKK  221 (226)
T ss_dssp             SSCCEEEE--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEE
T ss_pred             CCCeEEEE--CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCeEEE
Confidence            4 357999  44433211          0111122468899998889 9999999998887554443

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.58  E-value=1.4e-14  Score=125.49  Aligned_cols=169  Identities=15%  Similarity=0.204  Sum_probs=108.3

Q ss_pred             eecCCcEEEEEEecCC---CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542        108 VDVGHRIELHCRVSPK---RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES  184 (371)
Q Consensus       108 ~~~g~~v~l~C~~~~~---~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~  184 (371)
                      +..|+.++|.|.+.+.   +....|+|++++..+......     ......         ++.+.  ..+.|.|..++.+
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~-----~~~~~~---------~~~~~--~~s~L~I~~~~~~  243 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQ-----PREEQF---------NSTFR--SVSELPIMHQDWL  243 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccC-----CCCccc---------CCcEE--EEEEEEechHhcc
Confidence            4689999999999887   333589999998654322100     000011         11222  2257999999999


Q ss_pred             CccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-C-CCceEEEeCCcc
Q psy14542        185 DRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-P-LPTIKWYKQDSP  262 (371)
Q Consensus       185 d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~v~W~~~~~~  262 (371)
                      | .|.|+|.+.+. .+......   .+.+.. ....+|.+...+.... ...|+.++|.|.+.|+ | .+.|+|+++|..
T Consensus       244 D-~g~Y~C~~~~~-~~~~~~~~---~v~~~~-~~~~~P~v~v~~~~~~-~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~  316 (376)
T 2aty_A          244 N-GKEFKCRVNSA-AFPAPIEK---TISKTK-GRPKAPQLYTIPPPKE-QMAKDKVSLTCMITDFFPEDITVEWQWNGQP  316 (376)
T ss_pred             C-CCEEEEEEecC-CCCCceEE---EEcCCC-CCCcCCeEEeeCCCHH-HhcCCceEEEEEEEEeECCCcEEEEEECCEE
Confidence            9 99999999987 33222211   221100 0115677766655544 4568899999999985 3 458999999987


Q ss_pred             cccCCceE---------EecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        263 VEESDRIQ---------RIGSSLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       263 ~~~~~~~~---------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      +.......         ...+.|.|.....+|.|.|+|+|.|....
T Consensus       317 ~~~~~~~~~~~~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l~  362 (376)
T 2aty_A          317 AENYKNTQPIMNTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  362 (376)
T ss_pred             CCCeEeCCceECCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCCC
Confidence            64321111         11235777777778899999999987654

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.58  E-value=1.6e-14  Score=99.83  Aligned_cols=90  Identities=21%  Similarity=0.327  Sum_probs=76.3

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEec----ceEEEeccCCCCCeEEEEEEEc
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG----SSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      .+|.+...+.... +..|+.+.|.|.+.+.|.+.+.|++++..+....++....    ..|.|.++..+|+|.|+|.|.|
T Consensus         5 ~~P~i~~~~~~~~-v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n   83 (99)
T 3puc_A            5 SKPVIVTGLQDTT-VSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKN   83 (99)
T ss_dssp             EEEEEEECCCCEE-EESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEecCccEE-EeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEe
Confidence            4566666666666 9999999999999999999999999999888777765332    2799999999999999999999


Q ss_pred             CCCCceeEEEEEEec
Q psy14542        296 SEGQDKMQLFIQYAH  310 (371)
Q Consensus       296 ~~g~~~~~~~l~v~~  310 (371)
                      ..|.....+.|.|..
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 3puc_A           84 SAGSVSSSCKLTIKA   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCcEeEEEEEEEEe
Confidence            999998888888753

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=8.8e-15  Score=103.26  Aligned_cols=93  Identities=19%  Similarity=0.272  Sum_probs=77.8

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCccccc-CCceEEe---cc--eEEEeccCCCCCeEEEEEE
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEE-SDRIQRI---GS--SLSISHVEESDSGVWNCVA  293 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~---~~--~l~i~~~~~~d~G~Y~C~a  293 (371)
                      .+|.+...+.... +..|+.+.|.|.+.+.|.+.+.|++++..+.. ..++...   ++  .|.|.++..+|+|.|+|.|
T Consensus         7 ~~P~~~~~~~~~~-v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   85 (110)
T 2dm2_A            7 GAPFFEMKLKHYK-IFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMA   85 (110)
T ss_dssp             CCCCBSSCCCCEE-EETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEE
T ss_pred             CCCEEEecCcCeE-EeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEE
Confidence            4566666666666 99999999999999999999999999998875 3444432   22  6999999999999999999


Q ss_pred             EcCCCCceeEEEEEEecCcc
Q psy14542        294 NNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       294 ~n~~g~~~~~~~l~v~~~p~  313 (371)
                      .|..|.....+.|.|..+|.
T Consensus        86 ~N~~g~~~~~~~l~V~~~~~  105 (110)
T 2dm2_A           86 ANPQGRISCTGRLMVQAVNS  105 (110)
T ss_dssp             ECTTCCEEECCCEEEECCSC
T ss_pred             EECCCeEEEEEEEEEECCCC
Confidence            99999999989999987766

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.58  E-value=6.1e-14  Score=114.20  Aligned_cols=167  Identities=16%  Similarity=0.238  Sum_probs=98.6

Q ss_pred             eCCCcEEEeccCcEEEEEEecC-CCCCCeeEEEeC--CE---EEee-------------------------CCeeEEEEc
Q psy14542         16 SPSGQVVVDVGHRIELHCRVSP-KRLSSAKAWLKD--GL---VLRR-------------------------NSDEVLVLD   64 (371)
Q Consensus        16 ~p~~~~~~~~G~~v~l~C~~~~-~~~~~~~~W~~~--~~---~~~~-------------------------~~~~~l~i~   64 (371)
                      .|.. +.+.+|++++|.|.... ..+...+.|+|.  +.   .+..                         ....+|.|.
T Consensus         5 ~~~~-v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   83 (248)
T 3u2s_H            5 ESGG-GVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMN   83 (248)
T ss_dssp             EECC-EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             cCCC-EEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEEC
Confidence            3444 78999999999997653 233467999972  11   1100                         034579999


Q ss_pred             cCCcCCCeEEEEEEEcCCC----------------------CeEEEEEEEEec---ceeeEe-cCCceeeecCCcEEEEE
Q psy14542         65 RVQREDAGMYQCHVSADDD----------------------SAQMSAQVILGG---ELVEIA-SSNQVVVDVGHRIELHC  118 (371)
Q Consensus        65 ~~~~~d~G~Y~C~~~~~~~----------------------~~~~~~~l~v~~---~~~~~~-~~~~~~~~~g~~v~l~C  118 (371)
                      +++.+|+|.|.|.+.+..+                      .......|.|..   ..|.+. ..+...+..|+.++|.|
T Consensus        84 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C  163 (248)
T 3u2s_H           84 SLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGC  163 (248)
T ss_dssp             SCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEEE
T ss_pred             CCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEEE
Confidence            9999999999999986310                      011224555542   233333 23333346799999999


Q ss_pred             EecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        119 RVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       119 ~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      .+.+. |.+..+.|++++..+.....      .......|         .+...  +.|.|.....+|  |.|+|.+.+.
T Consensus       164 ~~~~~~P~~~~v~W~~~g~~~~~~~~------~~~~~~~g---------~~~~~--s~L~i~~~~~~~--~~ytC~v~h~  224 (248)
T 3u2s_H          164 LVKDYFPEPVTVSWNSGALTSGVHTF------PAVLQSSG---------LYSLS--SVVTVPSSSLGT--QTYICNVNHK  224 (248)
T ss_dssp             EEEEEBSSCCEEEEGGGTBCTTEEEC------CCEECTTS---------CEEEE--EEEEEEGGGBTT--BCCEEEEEEG
T ss_pred             EEeeEECCCeEEEEeECCccCceeec------CceECCCC---------CEEEE--EEEEEChhhcCC--CeEEEEEEEC
Confidence            99874 43478999998853221100      00011222         33322  567777665443  8999999998


Q ss_pred             ccceee
Q psy14542        198 LTGASL  203 (371)
Q Consensus       198 ~~~~~~  203 (371)
                       .+...
T Consensus       225 -~~~~~  229 (248)
T 3u2s_H          225 -PSNTK  229 (248)
T ss_dssp             -GGTEE
T ss_pred             -CCCcc
Confidence             44433

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=1.4e-14  Score=103.53  Aligned_cols=91  Identities=19%  Similarity=0.318  Sum_probs=74.1

Q ss_pred             cccceeee---eeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE--e--cceEEEeccCCCCCeEEEEE
Q psy14542        220 LSAAKMFE---KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR--I--GSSLSISHVEESDSGVWNCV  292 (371)
Q Consensus       220 ~~p~~~~~---~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~--~--~~~l~i~~~~~~d~G~Y~C~  292 (371)
                      .+|.+...   ..... +..|+.+.|.|.+.|.|.|.+.|++++..+.. .++..  .  ...|.|.++..+|+|.|+|.
T Consensus        20 ~~P~i~~~~~~~~~~~-v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   97 (118)
T 2e7c_A           20 EPPKIRLPRHLRQTYI-RKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDT-SRVHVRTSDFDTVFFVRQAARSDSGEYELS   97 (118)
T ss_dssp             EEEEECCCTTTSSCEE-EESSSCEEEEEEEEEESCCEEEEEETTEECCC-SSCEEEECSSEEEEEESSCCTTTCEEEEEE
T ss_pred             cCCeEecCcccCCCEE-EECCCEEEEEEEEccCCCCEEEEEECCEECCC-CcEEEEECCCeEEEEECCCChhcCEEEEEE
Confidence            45665432   23344 88999999999999999999999999998863 33332  2  24599999999999999999


Q ss_pred             EEcCCCCceeEEEEEEecCc
Q psy14542        293 ANNSEGQDKMQLFIQYAHGK  312 (371)
Q Consensus       293 a~n~~g~~~~~~~l~v~~~p  312 (371)
                      |.|..|.....+.|.|.++|
T Consensus        98 a~N~~G~~~~~~~l~V~~~P  117 (118)
T 2e7c_A           98 VQIENMKDTATIRIRVVEKA  117 (118)
T ss_dssp             EECSSCEECCEEEEEEECCC
T ss_pred             EEeCCCeEEEEEEEEEEcCC
Confidence            99999999999999998776

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.57  E-value=1.3e-14  Score=109.02  Aligned_cols=93  Identities=26%  Similarity=0.358  Sum_probs=80.4

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe-----cceEEEeccCCCCCeEEEEEEE
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GSSLSISHVEESDSGVWNCVAN  294 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~a~  294 (371)
                      .+|.+...+.... +..|+.+.|.|.+.|.|.+.+.|++++..+....++...     ...|.|.++..+|+|.|+|.|.
T Consensus        40 ~~P~~~~~~~~~~-v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  118 (154)
T 1fhg_A           40 VKPYFTKTILDME-VVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV  118 (154)
T ss_dssp             EEEEEEECCCCEE-EETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCeEEccCCcEE-EeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEE
Confidence            5677777666666 999999999999999999999999999998877776643     2489999999999999999999


Q ss_pred             cCCCCceeEEEEEEecCcc
Q psy14542        295 NSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       295 n~~g~~~~~~~l~v~~~p~  313 (371)
                      |..|.....+.|.|..+|.
T Consensus       119 N~~G~~~~~~~l~V~~~p~  137 (154)
T 1fhg_A          119 NSLGEATCTAELLVETMGK  137 (154)
T ss_dssp             ETTEEEEEEEEEEEECC--
T ss_pred             ECCCeEEEEEEEEEeCcCc
Confidence            9999999999999998888

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=1.1e-14  Score=100.45  Aligned_cols=89  Identities=19%  Similarity=0.255  Sum_probs=74.8

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe-c---ceEEEeccCCCCCeEEEEEEEc
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-G---SSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~-~---~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      .+|.+...+.... +..|+.+.|.|.+  .|.+.+.|+++|..+..+.++... +   ..|.|.++..+|+|.|+|.|.|
T Consensus         6 ~p~~~~~~~~~~~-v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   82 (100)
T 2yuz_A            6 SGLKILTPLTDQT-VNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDA   82 (100)
T ss_dssp             CCCCCSBCCCCEE-EETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESS
T ss_pred             CCCEEeccCCceE-EcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcC
Confidence            3556666666666 9999999999999  788999999999999888776632 2   3799999999999999999999


Q ss_pred             CCCCceeEEEEEEecCcc
Q psy14542        296 SEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       296 ~~g~~~~~~~l~v~~~p~  313 (371)
                      .  ....++.|.|.++|.
T Consensus        83 ~--~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           83 Y--NVTLPAKVHVISGPS   98 (100)
T ss_dssp             S--CCCEEEEEEEECCSC
T ss_pred             C--CeeEEEEEEEeCCCC
Confidence            8  567788899988876

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.57  E-value=1.9e-14  Score=99.48  Aligned_cols=90  Identities=22%  Similarity=0.391  Sum_probs=74.3

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceE-E-ecc---eEEEeccCCCCCeEEEEEEE
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ-R-IGS---SLSISHVEESDSGVWNCVAN  294 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-~-~~~---~l~i~~~~~~d~G~Y~C~a~  294 (371)
                      .+|.+...+.... +..|+.+.|.|.+.|.|.+.+.|++++..+....+.. . .++   +|.|.++..+|+|.|+|.|.
T Consensus         4 ~~P~~~~~~~~~~-v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   82 (99)
T 1u2h_A            4 APPTFKVSLMDQS-VREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAV   82 (99)
T ss_dssp             EEEEEEECCCCEE-EETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEEcCCceE-ecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEE
Confidence            4566666666666 9999999999999999999999999999887654332 1 122   69999999999999999999


Q ss_pred             cCCCCceeEEEEEEec
Q psy14542        295 NSEGQDKMQLFIQYAH  310 (371)
Q Consensus       295 n~~g~~~~~~~l~v~~  310 (371)
                      |..|.....+.|.|.+
T Consensus        83 N~~g~~~~~~~l~V~~   98 (99)
T 1u2h_A           83 NEYGARQCEARLEVRG   98 (99)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             ECCCceeEEEEEEEEC
Confidence            9999999898888864

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.57  E-value=1.6e-14  Score=118.04  Aligned_cols=158  Identities=17%  Similarity=0.255  Sum_probs=89.3

Q ss_pred             EEEeccCcEEEEEEecCCC-CCCeeEEEeCC--E--E-Ee---------------eC----------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--L--V-LR---------------RN----------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~--~--~-~~---------------~~----------~~~~l~i~~~~~~   69 (371)
                      +.+.+|++++|.|.+.... ....+.|+|..  .  . +.               ..          ...+|.|.+++.+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (257)
T 3bn9_D           10 GLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRAE   89 (257)
T ss_dssp             EEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCGG
T ss_pred             EEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCChh
Confidence            6899999999999765332 15679999842  1  1 10               00          2468999999999


Q ss_pred             CCeEEEEEEEcCCCC---------e----EEEEEEEEec---ceeeEec-CCceeeecCCcEEEEEEecCC-CCCceEEE
Q psy14542         70 DAGMYQCHVSADDDS---------A----QMSAQVILGG---ELVEIAS-SNQVVVDVGHRIELHCRVSPK-RLSSAKAW  131 (371)
Q Consensus        70 d~G~Y~C~~~~~~~~---------~----~~~~~l~v~~---~~~~~~~-~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W  131 (371)
                      |+|.|.|.+.+..+.         .    .....|.|..   .+|.+.. .+...+..|+.++|.|.+.+. |.+..+.|
T Consensus        90 DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi~v~W  169 (257)
T 3bn9_D           90 DTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW  169 (257)
T ss_dssp             GCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSCCEEEE
T ss_pred             hCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCCcEEEE
Confidence            999999999976541         1    1235777763   2344433 233334689999999999886 55349999


Q ss_pred             eeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        132 LKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      ++++..+... ..    ... ....|         .+..  .+.|.|.+...+|  |.|+|.+.|.
T Consensus       170 ~k~g~~~~~~-~~----~~~-~~~~g---------~y~~--~s~L~I~~~~~~~--g~YtC~v~n~  216 (257)
T 3bn9_D          170 NSGALTSGVH-TF----PAV-LQSSG---------LYSL--SSVVTVPSSSLGT--QTYICNVNHK  216 (257)
T ss_dssp             TTTTCCSSCE-EC----CCE-ECTTS---------CEEE--EEECCCC---------CEEEEEEEG
T ss_pred             eeCCCcCCcE-ec----CCe-EcCCC---------CEEE--EEEEEEcccccCC--CeEEEEEEec
Confidence            9988753211 00    000 01222         2222  1567777766543  9999999997

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.57  E-value=1.2e-14  Score=103.09  Aligned_cols=79  Identities=19%  Similarity=0.389  Sum_probs=69.3

Q ss_pred             ecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE-----------ecceEEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542        235 KKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR-----------IGSSLSISHVEESDSGVWNCVANNSEGQDKMQ  303 (371)
Q Consensus       235 ~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  303 (371)
                      ..+..+.|.|.+.|+|.|.|+|++||..+....+...           ..+.|.|.++...|+|.|+|.|.|..|....+
T Consensus        13 ~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t   92 (126)
T 1he7_A           13 VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS   92 (126)
T ss_dssp             CCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             ccCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEE
Confidence            4567899999999999999999999999987765431           13579999999999999999999999999999


Q ss_pred             EEEEEecCcc
Q psy14542        304 LFIQYAHGKY  313 (371)
Q Consensus       304 ~~l~v~~~p~  313 (371)
                      +.|.|...|.
T Consensus        93 ~~l~v~~~P~  102 (126)
T 1he7_A           93 IMAAFMDNPF  102 (126)
T ss_dssp             EEECCCSCTT
T ss_pred             EEEEEEcCCC
Confidence            9999988777

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.56  E-value=7.5e-15  Score=102.64  Aligned_cols=89  Identities=29%  Similarity=0.534  Sum_probs=76.7

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe----cceEEEeccCCCCCeEEEEEEEc
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      .+|.+...+.... +..|+.+.|.|.+.|.|.+.+.|++++..+....++...    ++.|.|.++..+|+|.|+|.|.|
T Consensus        13 ~~~~i~~~p~~~~-v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   91 (106)
T 1nct_A           13 LAARILTKPRSMT-VYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVEN   91 (106)
T ss_dssp             CCCEEEECCCCEE-ESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBC
T ss_pred             CCCEEEECCCCEE-EeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEe
Confidence            4556666666666 999999999999999999999999999988877776643    36899999999999999999999


Q ss_pred             CCCCceeEEEEEEe
Q psy14542        296 SEGQDKMQLFIQYA  309 (371)
Q Consensus       296 ~~g~~~~~~~l~v~  309 (371)
                      ..|....++.|.|.
T Consensus        92 ~~G~~~~~~~l~V~  105 (106)
T 1nct_A           92 SEGKQEAEFTLTIQ  105 (106)
T ss_dssp             SSCBCCEEEEEEEC
T ss_pred             CCCeEEEEEEEEEE
Confidence            99999999888875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.56  E-value=1.2e-14  Score=125.37  Aligned_cols=99  Identities=14%  Similarity=0.213  Sum_probs=68.0

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccC----CceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEES----DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA  309 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  309 (371)
                      +.+|+.+.|.|.+.| |.|.+.|++++..+...    .++...+++|.|.++..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus       258 v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~  336 (361)
T 2xot_A          258 AHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVY  336 (361)
T ss_dssp             EETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEEETTEEEESSCCTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             ecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEeecCeEEEeecCcccCEEEEEEEecCCCccEEEEEEEEE
Confidence            899999999999998 99999999987754332    2555577899999999999999999999999999999988886


Q ss_pred             cCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccc
Q psy14542        310 HGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK  369 (371)
Q Consensus       310 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~  369 (371)
                      ..+.                                    +|+.++|.|.+.|.|+|+|+
T Consensus       337 ~~~~------------------------------------~g~~~~l~C~~~g~P~P~i~  360 (361)
T 2xot_A          337 NFTL------------------------------------HGHHDTLNAAADPWSHPQFE  360 (361)
T ss_dssp             SSCC------------------------------------C-------------------
T ss_pred             eeec------------------------------------cCCceEEEEEeCCCCCCccc
Confidence            5433                                    68899999999999999874

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.55  E-value=1.3e-13  Score=111.01  Aligned_cols=171  Identities=15%  Similarity=0.213  Sum_probs=102.7

Q ss_pred             EEEeccCcEEEEEEecC-CCCCCeeEEEeC--C---EEEee-------------------------CCeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSP-KRLSSAKAWLKD--G---LVLRR-------------------------NSDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~-~~~~~~~~W~~~--~---~~~~~-------------------------~~~~~l~i~~~~~~   69 (371)
                      +.+.+|++++|.|.+.. ......+.|||.  +   ..+..                         ....+|.|.+++.+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (230)
T 3n9g_H           10 EVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRSE   89 (230)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCChh
Confidence            78999999999997653 223467999972  1   11100                         03456999999999


Q ss_pred             CCeEEEEEEEcCC-----CCe---EEEEEEEEec---ceeeEe-cCCceeeecCCcEEEEEEecCCCC-CceEEEeeCCE
Q psy14542         70 DAGMYQCHVSADD-----DSA---QMSAQVILGG---ELVEIA-SSNQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGL  136 (371)
Q Consensus        70 d~G~Y~C~~~~~~-----~~~---~~~~~l~v~~---~~~~~~-~~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~  136 (371)
                      |+|.|.|.+.+..     +..   .....|.|..   .+|.+. ..+...+..|+.++|.|.+.+.++ +..+.|  ++.
T Consensus        90 DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W--~~~  167 (230)
T 3n9g_H           90 DTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSG  167 (230)
T ss_dssp             GCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE--GGG
T ss_pred             hCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE--CCc
Confidence            9999999998753     111   1234566641   233333 233333468999999999987533 468999  444


Q ss_pred             EeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542        137 VLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT  214 (371)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~  214 (371)
                      .+.....    .........|         .+...  +.|.|.....+|  |.|+|.+.+. .+......   .+.+.
T Consensus       168 ~~~~~~~----~~~~~~~~~g---------~~~~~--s~L~i~~~~~~~--~~ytC~v~h~-~~~~~~~~---~~~v~  224 (230)
T 3n9g_H          168 ALTSGVH----TFPAVLQSSG---------LYSLS--SVVTVPSSSLGT--QTYICNVNHK-PSNTKVDK---RVEPK  224 (230)
T ss_dssp             TBCTTEE----ECCCEECTTS---------CEEEE--EEEEEESTTBTT--BCCEEEEEEG-GGTEEEEE---ECCCC
T ss_pred             ccCCCeE----eCCceECCCC---------CEEEE--EEEEECHHHcCC--CeEEEEEEEC-CCCcceEE---EccCC
Confidence            3321100    0000011223         23222  567777776544  8999999998 54444443   44444

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.54  E-value=2.9e-14  Score=114.89  Aligned_cols=164  Identities=13%  Similarity=0.176  Sum_probs=100.6

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCC-CCCCeeEEEeCC-----EEEe--------------eC----------CeeEEE
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDG-----LVLR--------------RN----------SDEVLV   62 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~~-----~~~~--------------~~----------~~~~l~   62 (371)
                      +...|.. +.+.+|++++|.|.+... .+...+.|+|..     ..+.              ..          ...+|.
T Consensus         4 v~q~p~~-v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   82 (230)
T 1ypz_F            4 LEQPEIS-ISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILT   82 (230)
T ss_dssp             EECSCSE-EEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEE
T ss_pred             ccccCCE-EEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEE
Confidence            3444555 889999999999976543 145679999832     1110              01          335899


Q ss_pred             EccCCcCCCeEEEEEEEcC--CCC-e-EEEEEEEEec----------ceeeEecCCceeeecCCcEEEEEEecCC-CCCc
Q psy14542         63 LDRVQREDAGMYQCHVSAD--DDS-A-QMSAQVILGG----------ELVEIASSNQVVVDVGHRIELHCRVSPK-RLSS  127 (371)
Q Consensus        63 i~~~~~~d~G~Y~C~~~~~--~~~-~-~~~~~l~v~~----------~~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~  127 (371)
                      |.+++.+|+|.|.|.+.+.  ... . .....|.|..          ..+.+.......+..|+.++|.|.+.+. |.++
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~  162 (230)
T 1ypz_F           83 IYSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVI  162 (230)
T ss_dssp             ECSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCC
T ss_pred             ECcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCe
Confidence            9999999999999999874  111 1 1234666641          1112222111122468999999999876 5446


Q ss_pred             eEEEee-CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        128 AKAWLK-DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       128 ~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      .+.|++ ++..+.......     .. ..         ++.+...  +.|.|.....   .|.|+|.+.+.
T Consensus       163 ~v~W~~~~g~~l~~~~~~~-----~~-~~---------~~~~~~~--s~L~i~~~~~---~~~ytC~v~~~  213 (230)
T 1ypz_F          163 RVYWKEKDGNTILDSQEGD-----TL-KT---------NDTYMKF--SWLTVPERAM---GKEHRCIVKHE  213 (230)
T ss_dssp             EEEEECTTSSCBCCCEECC-----CE-EE---------TTEEEEE--EEEEECGGGT---TSCEEEEEECS
T ss_pred             EEEEEccCCeEccccccce-----ee-cC---------CCCEEEE--EEEEEEhhhC---CCEEEEEEEEC
Confidence            999999 776554321100     00 11         2233222  5677766653   38999999987

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=2.8e-14  Score=98.48  Aligned_cols=79  Identities=20%  Similarity=0.464  Sum_probs=72.1

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      +..|+.+.|.|.+.+.| +.+.|++++..+....++...++.|.|.++..+|+|.|+|.|.|..|.....+.|.|...+.
T Consensus        15 v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~   93 (99)
T 2cr3_A           15 VHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALP   93 (99)
T ss_dssp             BCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEECSSEEEETTCCTTTCEEEEEEEEETTEEEEEEEEECBCSCCS
T ss_pred             EeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEECCEEEEccCCHHHCEEEEEEEEeCCceEEEEEEEEEecCCC
Confidence            88999999999999877 79999999999887777777788999999999999999999999999998889998887765

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=9.7e-15  Score=103.08  Aligned_cols=93  Identities=23%  Similarity=0.411  Sum_probs=78.7

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE---e--cceEEEeccCCCCCeEEEEEEE
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR---I--GSSLSISHVEESDSGVWNCVAN  294 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~---~--~~~l~i~~~~~~d~G~Y~C~a~  294 (371)
                      .+|.+...+.... +..|+.+.|.|.+.+.|.+.+.|++++..+....+...   .  ..+|.|.++..+|+|.|+|.|.
T Consensus         8 ~~P~i~~~~~~~~-v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   86 (110)
T 2dm3_A            8 FRPHFLQAPGDLT-VQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIAT   86 (110)
T ss_dssp             CCCEEEECCCEEE-EESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEE
T ss_pred             CCCcEEeCCCcEE-EeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEE
Confidence            4666766666666 99999999999999999999999999998876654331   1  2379999999999999999999


Q ss_pred             cCCCCceeEEEEEEecCcc
Q psy14542        295 NSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       295 n~~g~~~~~~~l~v~~~p~  313 (371)
                      |..|.....+.|.|..+|.
T Consensus        87 n~~g~~~~~~~l~V~~~p~  105 (110)
T 2dm3_A           87 NRAGQNSFSLELVVAAKES  105 (110)
T ss_dssp             CSSCEEEECCEEEEECCCC
T ss_pred             CCCCEEEEEEEEEEeCCCC
Confidence            9999999999999988776

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.54  E-value=7e-14  Score=96.12  Aligned_cols=78  Identities=17%  Similarity=0.281  Sum_probs=69.3

Q ss_pred             eecCCeEEEEEEeecC-CCCceEEEeCCcccccCCceEE--ecc--eEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGN-PLPTIKWYKQDSPVEESDRIQR--IGS--SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~--~~~--~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      +..|+.+.|.|.+.+. |.+.+.|++++..+....++..  .++  .|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus        13 v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V   92 (97)
T 2bk8_A           13 GEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV   92 (97)
T ss_dssp             ECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeEeEEEEEEE
Confidence            8999999999999997 8899999999998887777653  334  8999999999999999999999999999999888


Q ss_pred             ecC
Q psy14542        309 AHG  311 (371)
Q Consensus       309 ~~~  311 (371)
                      .+.
T Consensus        93 ~~~   95 (97)
T 2bk8_A           93 KGV   95 (97)
T ss_dssp             TTT
T ss_pred             Eec
Confidence            653

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.53  E-value=1.5e-13  Score=129.88  Aligned_cols=165  Identities=13%  Similarity=0.146  Sum_probs=107.5

Q ss_pred             CCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCcccee
Q psy14542        111 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSY  190 (371)
Q Consensus       111 g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y  190 (371)
                      +..+.|.|.+.+.|. +.+.|.++|..+......                              .+.|..+...+..+.|
T Consensus        91 ~g~l~v~c~~~g~P~-p~i~W~k~g~~~~~~~~~------------------------------~~~i~~~~~~~~~l~~  139 (731)
T 2v5y_A           91 PGLLNVYVKVNNGPL-GNPIWNISGDPTRTWNRA------------------------------ELAISTFWPNFYQVIF  139 (731)
T ss_dssp             SEEEEEEEEETTCCC-CSEEEEECCCCCSSCEEE------------------------------EEEECCCTTSCEEEEE
T ss_pred             cceEEEEEecCCCCc-cceeEEEeCCcCCceeEE------------------------------EEEEeecCCCceEEEE
Confidence            358899999999887 899999999765432221                              1222221111112445


Q ss_pred             EEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceE-EE--eCCcccccCC
Q psy14542        191 QCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK-WY--KQDSPVEESD  267 (371)
Q Consensus       191 ~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~-W~--~~~~~~~~~~  267 (371)
                      .|.+.+. .|.....    .+.+.......+|.+. .+.... +..|+.+.|.|.+.|.|.|.+. |+  ++|..+....
T Consensus       140 ~~va~~~-~G~~~~~----~v~~~~~~~~~~p~~~-~~~~~~-v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~  212 (731)
T 2v5y_A          140 EVITSGH-QGYLAID----EVKVLGHPCTRTPHFL-RIQNVE-VNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKE  212 (731)
T ss_dssp             EEEECSS-CCEEEEC----CBEEESSCCSSSCEEC-CCCCEE-EETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEE
T ss_pred             EEEecCC-ceEEEEe----eEEeeecccccccccc-cccceE-EeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccc
Confidence            5544433 3322211    1222211111455555 344455 9999999999999999999987 88  6777665432


Q ss_pred             ceE----EecceEEEeccCCCCCeEEEEEEEcCCCC-ceeEEEEEEecCcc
Q psy14542        268 RIQ----RIGSSLSISHVEESDSGVWNCVANNSEGQ-DKMQLFIQYAHGKY  313 (371)
Q Consensus       268 ~~~----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~p~  313 (371)
                      ...    ...+.|.|.++...|.|.|+|.|.|..|. .+..+.|.|..+|.
T Consensus       213 ~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~  263 (731)
T 2v5y_A          213 IKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPV  263 (731)
T ss_dssp             EEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCC
T ss_pred             eEEeccccceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCCC
Confidence            211    12368999999999999999999999998 67778888887776

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.52  E-value=2.1e-14  Score=100.98  Aligned_cols=92  Identities=25%  Similarity=0.465  Sum_probs=65.3

Q ss_pred             eeeEEecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCcCCCeEE
Q psy14542          2 QLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAGMY   74 (371)
Q Consensus         2 ~~~~~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y   74 (371)
                      +|.|.+..+|.+...|.. ..+.+|+.+.|.|. ..+.|.+.+.|++++..+...       ...+|.|.+++.+|+|.|
T Consensus         2 ~~~v~~~~~P~~~~~~~~-~~v~~G~~v~l~C~-~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   79 (108)
T 3kvq_A            2 QLTVLERVAPTITGNLEN-QTTSIGESIEVSCT-ASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLY   79 (108)
T ss_dssp             ---------CCCBSCCCC-EEEETTCCEEEECB-CC----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEE
T ss_pred             ceeECccCCCceecCCCC-eEEeCCCeEEEEEE-CcCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEE
Confidence            356677778888888887 89999999999995 457788899999988766533       457899999999999999


Q ss_pred             EEEEEcCCCCeEEEEEEEEec
Q psy14542         75 QCHVSADDDSAQMSAQVILGG   95 (371)
Q Consensus        75 ~C~~~~~~~~~~~~~~l~v~~   95 (371)
                      +|.+.|..|.....+.|.|..
T Consensus        80 ~C~a~n~~g~~~~~~~l~V~~  100 (108)
T 3kvq_A           80 TCQACSVLGCAKVEAFFIIEG  100 (108)
T ss_dssp             EEEEC----CEEEEEEEEEEC
T ss_pred             EEEEEeCCCceEEEEEEEEeC
Confidence            999999999998899998883

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.52  E-value=1.1e-13  Score=97.19  Aligned_cols=88  Identities=16%  Similarity=0.232  Sum_probs=69.1

Q ss_pred             ccceeeeeeeeeeeecCCeEEEEEEeecCCC---CceEEEeCCcccc---cCCceEE----------ecceEEEeccCCC
Q psy14542        221 SAAKMFEKHRILNVKKDESVILPCSAQGNPL---PTIKWYKQDSPVE---ESDRIQR----------IGSSLSISHVEES  284 (371)
Q Consensus       221 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~v~W~~~~~~~~---~~~~~~~----------~~~~l~i~~~~~~  284 (371)
                      .|.+...+.... +..|+.++|.|.+.|.|.   |.+.|++++....   ...++..          ....|.|.++..+
T Consensus         4 ~p~f~~~p~~~~-v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   82 (108)
T 3cx2_A            4 IGLFVMRPQDGE-VTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA   82 (108)
T ss_dssp             CCSCSBCCCCEE-EETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGG
T ss_pred             ccEEEeCCCcEE-EeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCc
Confidence            455666666666 999999999999999988   9999999773211   1123321          2457999999999


Q ss_pred             CCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542        285 DSGVWNCVANNSEGQDKMQLFIQYA  309 (371)
Q Consensus       285 d~G~Y~C~a~n~~g~~~~~~~l~v~  309 (371)
                      |+|.|+|.|.|..|....++.|.|.
T Consensus        83 D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           83 FTGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             cCEEEEEEEecCCCceEEEEEEEEe
Confidence            9999999999999999999999885

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.52  E-value=7.5e-14  Score=95.53  Aligned_cols=78  Identities=23%  Similarity=0.411  Sum_probs=70.4

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      +..|+.+.|.|.+.+  .|.+.|+++|..+....++...++.|.|.++..+|+|.|+|.|.|..|.....+.|.|.+++.
T Consensus        13 v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~   90 (95)
T 4hwu_A           13 VAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDSGLYACTAARTVDSETWIFMVNVTDAAE   90 (95)
T ss_dssp             ECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCC--
T ss_pred             ECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceEEEeCCEEEECcCCcccCEEEEEEEccCCCcEEEEEEEEEeCCcc
Confidence            889999999999886  579999999999988888888888999999999999999999999999999999999987765

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.52  E-value=1.5e-15  Score=120.97  Aligned_cols=167  Identities=14%  Similarity=0.221  Sum_probs=100.7

Q ss_pred             eecCCcEEEEEEecCCCC--CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCC
Q psy14542        108 VDVGHRIELHCRVSPKRL--SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESD  185 (371)
Q Consensus       108 ~~~g~~v~l~C~~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d  185 (371)
                      +.+|+.++|.|.+.+.++  ++.+.| + +.......     .........|         ++.  ....|.|.++..+|
T Consensus        16 v~~G~~v~L~C~~~g~~p~~~~~v~W-~-~~~~~~~~-----~~~~~~~~~g---------~~~--~~~~L~I~~~~~~D   77 (214)
T 1ow0_A           16 LLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAV-----QGPPERDLCG---------CYS--VSSVLPGCAEPWNH   77 (214)
T ss_dssp             HHHCSSCCCEEEETTCCSCCCCCCCB-S-SCSSCCCE-----ECCCCCCSTT---------CCC--EEEECTTTHHHHHH
T ss_pred             hccCCCcEEEEEEeeeECCCCeEEEE-c-CCCCCCcc-----cCCceECCCC---------cEE--EEEEEEEeHHHcCC
Confidence            478999999999988754  268999 3 33222110     0000001122         221  22568888888999


Q ss_pred             ccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CC-CceEEEeCCccc
Q psy14542        186 RYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PL-PTIKWYKQDSPV  263 (371)
Q Consensus       186 ~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~  263 (371)
                       .|.|.|.+.+. .+......   .+.+  .....+|.+.........+..|+.+.|.|.+.|. |. +.|.|+++|..+
T Consensus        78 -~g~Y~C~~~~~-~~~~~~~~---~i~~--~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l  150 (214)
T 1ow0_A           78 -GKTFTCTAAYP-ESKTPLTA---TLSK--SGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQEL  150 (214)
T ss_dssp             -TCEEEEEECCS-SCSSCEEE---EEEC--CSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEEC
T ss_pred             -CCeEEEEEecC-CCCCceeE---eecc--CCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEEC
Confidence             99999999987 43222111   2221  0011556655433221115678999999999984 54 489999999887


Q ss_pred             ccCCc----eE-E---ecce------EEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        264 EESDR----IQ-R---IGSS------LSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       264 ~~~~~----~~-~---~~~~------l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      .....    .. .   .+++      |.+.....+|.|.|+|+|.|....
T Consensus       151 ~~~~~~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~  200 (214)
T 1ow0_A          151 PREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  200 (214)
T ss_dssp             CGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCT
T ss_pred             CCCceeecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCC
Confidence            65421    11 1   2333      344444445689999999997754

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.52  E-value=5.5e-14  Score=93.12  Aligned_cols=73  Identities=21%  Similarity=0.370  Sum_probs=61.8

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe----cceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA  309 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  309 (371)
                      +.+|+.+.|.|.+.+ |.|.+.|++||..+..+.++...    ..+|.|.++..+|+|.|+|.|    |....++.|.|.
T Consensus         8 ~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a----~n~~~~a~l~V~   82 (84)
T 2lu7_A            8 STPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDA----PQDSRIFLVSVE   82 (84)
T ss_dssp             ECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEEC----TTTCEEEEEEEC
T ss_pred             EecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEE----CCEEEEEEEEEE
Confidence            889999999999865 88999999999999888877632    236999999999999999998    446677888887


Q ss_pred             cC
Q psy14542        310 HG  311 (371)
Q Consensus       310 ~~  311 (371)
                      +|
T Consensus        83 eP   84 (84)
T 2lu7_A           83 EP   84 (84)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.51  E-value=7e-14  Score=99.22  Aligned_cols=88  Identities=16%  Similarity=0.227  Sum_probs=69.0

Q ss_pred             cceeeeeeeeeeeecCCeEEEEEEeecC---CCCceEEEeCCccc-c--cCCceEE----------ecceEEEeccCCCC
Q psy14542        222 AAKMFEKHRILNVKKDESVILPCSAQGN---PLPTIKWYKQDSPV-E--ESDRIQR----------IGSSLSISHVEESD  285 (371)
Q Consensus       222 p~~~~~~~~~~~~~~g~~~~l~C~~~~~---p~~~v~W~~~~~~~-~--~~~~~~~----------~~~~l~i~~~~~~d  285 (371)
                      +.|...+.... +.+|++++|.|.+.+.   |.|.|.|+|+.... .  .+.++..          ....|.|.++..+|
T Consensus         8 ~~F~~~P~~v~-V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   86 (126)
T 2dav_A            8 ILFIEKPQGGT-VKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNF   86 (126)
T ss_dssp             CSCCSCCCCCE-EETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTS
T ss_pred             cEEEEcCCCeE-EeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCccc
Confidence            44555565666 9999999999999874   88999999974211 1  1222321          24679999999999


Q ss_pred             CeEEEEEEEcCCCCceeEEEEEEec
Q psy14542        286 SGVWNCVANNSEGQDKMQLFIQYAH  310 (371)
Q Consensus       286 ~G~Y~C~a~n~~g~~~~~~~l~v~~  310 (371)
                      +|.|+|+|.|..|....++.|.|..
T Consensus        87 aG~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           87 AGNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             CEEEEEEEECSSCEEEECCEEEEEC
T ss_pred             CEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            9999999999999999999999998

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.51  E-value=7e-14  Score=99.92  Aligned_cols=90  Identities=17%  Similarity=0.295  Sum_probs=73.2

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE--------ecceEEEeccCCCCCeEEEE
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR--------IGSSLSISHVEESDSGVWNC  291 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C  291 (371)
                      .+|.+.....    ........|.|.+.|.|.|.+.|+++|..+..+.+...        ..+.|.|.++..+|+|.|+|
T Consensus         7 ~pP~i~~~~~----~~~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   82 (118)
T 1wwc_A            7 YPPRVVSLEE----PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTL   82 (118)
T ss_dssp             CCCCCCCCCC----CCCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEE
T ss_pred             cCCceeccCC----CeeccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEEEEE
Confidence            5666554422    22236678999999999999999999998887765442        35689999999999999999


Q ss_pred             EEEcCCCCceeEEEEEEecCcc
Q psy14542        292 VANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       292 ~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      .|.|..|....++.|.|...|.
T Consensus        83 ~a~N~~G~~~~~~~l~v~~~P~  104 (118)
T 1wwc_A           83 IAKNPLGTANQTINGHFLKEPF  104 (118)
T ss_dssp             EEEETTEEEEEEEEECCSCCCC
T ss_pred             EEECCCCeEeeEEEEEEccCCC
Confidence            9999999999999999888776

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.51  E-value=1.6e-13  Score=93.04  Aligned_cols=85  Identities=15%  Similarity=0.096  Sum_probs=68.1

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe--c--ceEEEeccCCCCCeEEEEEEEc
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--G--SSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      .+|.+...+.+.. +.+|+.+.|.|.+.+ +.+.+.|+++|..+..+.++...  +  .+|.|.++..+|+|.|+|.|.|
T Consensus         4 ~~~~~~~~~~~~~-v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n   81 (93)
T 1waa_A            4 ALIEVEKPLYGVE-VFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN   81 (93)
T ss_dssp             CCCCEEECCCCEE-EETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETT
T ss_pred             CCcEeeccCcceE-EeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECC
Confidence            4566666666666 999999999999976 55789999999999888777632  2  3799999999999999999987


Q ss_pred             CCCCceeEEEEEEec
Q psy14542        296 SEGQDKMQLFIQYAH  310 (371)
Q Consensus       296 ~~g~~~~~~~l~v~~  310 (371)
                      .    ..++.|.|.+
T Consensus        82 ~----~~sa~L~V~~   92 (93)
T 1waa_A           82 T----KSAANLKVKE   92 (93)
T ss_dssp             E----EEEEEEEEEC
T ss_pred             C----cEEEEEEEEc
Confidence            4    4566677654

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.50  E-value=1.3e-13  Score=95.17  Aligned_cols=84  Identities=18%  Similarity=0.215  Sum_probs=71.5

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEEEEE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQCHV   78 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~   78 (371)
                      .+|.+...|.. ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+...          ...+|.|.+++.+|+|.|+|.+
T Consensus         4 ~~P~~~~~~~~-~~v~~G~~v~l~C~~-~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   81 (99)
T 1g1c_A            4 EAPKIFERIQS-QTVGQGSDAHFRVRV-VGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKA   81 (99)
T ss_dssp             EEEEEEECCCC-EEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCceEecCcc-eEEcCCCcEEEEEEE-EEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEE
Confidence            35777777877 899999999999965 46788999999999877643          3447999999999999999999


Q ss_pred             EcCCCCeEEEEEEEEe
Q psy14542         79 SADDDSAQMSAQVILG   94 (371)
Q Consensus        79 ~~~~~~~~~~~~l~v~   94 (371)
                      .|..|.....+.|.|.
T Consensus        82 ~N~~g~~~~~~~l~V~   97 (99)
T 1g1c_A           82 INIAGETSSHAFLLVQ   97 (99)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EECCCcEEEEEEEEEe
Confidence            9999888888888876

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.50  E-value=1.1e-13  Score=95.79  Aligned_cols=84  Identities=18%  Similarity=0.335  Sum_probs=71.5

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEEEEE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQCHV   78 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~   78 (371)
                      .+|.+...|.. ..+.+|++++|.|.+ .+.|.+.+.|++++..+...          ...+|.|.+++.+|+|.|+|.+
T Consensus         4 ~~P~~~~~p~~-~~~~~G~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   81 (100)
T 2kdg_A            4 GPPRFIQVPEN-MSIDEGRFCRMDFKV-SGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVA   81 (100)
T ss_dssp             EEEECCCCCCC-EEEETTCCEEEEEEC-EEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCeEEeCCCC-EEecCCCEEEEEEEE-EeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEE
Confidence            35677777777 899999999999954 56788899999999887654          2248999999999999999999


Q ss_pred             EcCCCCeEEEEEEEEe
Q psy14542         79 SADDDSAQMSAQVILG   94 (371)
Q Consensus        79 ~~~~~~~~~~~~l~v~   94 (371)
                      .|..|.....+.|.|.
T Consensus        82 ~n~~g~~~~~~~l~V~   97 (100)
T 2kdg_A           82 KNRAGEATFTVQLDVL   97 (100)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EcCCCeEEEEEEEEEE
Confidence            9999988888888887

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.50  E-value=1e-12  Score=107.59  Aligned_cols=166  Identities=15%  Similarity=0.223  Sum_probs=96.7

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEeC--C---EEEee-------------------------CCeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKD--G---LVLRR-------------------------NSDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~--~---~~~~~-------------------------~~~~~l~i~~~~~~   69 (371)
                      +.+.+|++++|.|..... .....+.|+|.  +   ..+..                         ....+|.|.+++.+
T Consensus        33 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~  112 (256)
T 3sob_H           33 GLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLRAE  112 (256)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCCcc
Confidence            689999999999976532 23467999972  1   11100                         04456999999999


Q ss_pred             CCeEEEEEEEcCCC-------C----eEEEEEEEEec---ceeeEe-cCCceeeecCCcEEEEEEecCC-CCCceEEEee
Q psy14542         70 DAGMYQCHVSADDD-------S----AQMSAQVILGG---ELVEIA-SSNQVVVDVGHRIELHCRVSPK-RLSSAKAWLK  133 (371)
Q Consensus        70 d~G~Y~C~~~~~~~-------~----~~~~~~l~v~~---~~~~~~-~~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~  133 (371)
                      |+|.|.|.+.+..+       .    ......|.|..   .+|.+. ..+...+.+|+.++|.|.+.+. |.+..+.|  
T Consensus       113 DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~v~W--  190 (256)
T 3sob_H          113 DTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--  190 (256)
T ss_dssp             GCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCCEEEE--
T ss_pred             cCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCeEEEE--
Confidence            99999999986431       0    11224566642   233333 2333344689999999999874 43478999  


Q ss_pred             CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeee
Q psy14542        134 DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSV  206 (371)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~  206 (371)
                      ++..+.....    .........|         .+...  +.|.|.....+|  |.|+|.+.+. .+......
T Consensus       191 ~~~~~~~~~~----~~~~~~~~~g---------~~~~~--s~L~i~~~~~~d--~~ytC~v~~~-~~~~~~~~  245 (256)
T 3sob_H          191 NSGALTSGVH----TFPAVLQSSG---------LYSLS--SVVTVPSSSLGT--QTYICNVNHK-PSNTKVDK  245 (256)
T ss_dssp             GGGTBCTTEE----ECCCEECTTS---------CEEEE--EEEEEEGGGTTT--CCCEEEEEEG-GGTEEEEE
T ss_pred             CCcccCCCeE----eCCceeCCCC---------CEEEE--EEEEECHHHcCC--ceEEEEEEeC-CCCcceEE
Confidence            4433321100    0000111223         33322  567777765544  8999999998 54443333

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.50  E-value=3.4e-13  Score=114.61  Aligned_cols=173  Identities=18%  Similarity=0.221  Sum_probs=108.4

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCC-------------CCCeeEEEeC--CE---EEe-----------------
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKR-------------LSSAKAWLKD--GL---VLR-----------------   54 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~-------------~~~~~~W~~~--~~---~~~-----------------   54 (371)
                      .+.+...+.. +.+.+|++++|.|......             ....+.||+.  |+   .+.                 
T Consensus       158 ~f~V~tq~~s-v~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~  236 (401)
T 3f8u_B          158 VLTVLTHTPA-PRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAV  236 (401)
T ss_dssp             EEEEEESCSS-CEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCE
T ss_pred             EEEEeCCCCc-EEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeE
Confidence            3445455555 8999999999999765332             1356999861  21   000                 


Q ss_pred             -------------eCCeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEecceeeEecCCcee--eecCC-cEEEEE
Q psy14542         55 -------------RNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVV--VDVGH-RIELHC  118 (371)
Q Consensus        55 -------------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~--~~~g~-~v~l~C  118 (371)
                                   ...+.+|.|.+++.+|+|.|.|.+.+..+.....+.|.|. .+|.+...+...  ...|+ .++|.|
T Consensus       237 ~f~~~~~~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~-~pP~V~v~p~~~~~~~~G~~~vtL~C  315 (401)
T 3f8u_B          237 AFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVY-KPPKVSLMPATLARAAPGEAPPELLC  315 (401)
T ss_dssp             EEEEESCCCSSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEE-BCCEEEEESSSCCCCCTTCCCCCEEE
T ss_pred             EEEeecccccccccCCcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeec-cCCeEeeccCcceeecCCCccEEEEE
Confidence                         0034689999999999999999999877766778888888 566655443332  24676 799999


Q ss_pred             EecCCCCC--ceEEEe-eCCE---EeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEE
Q psy14542        119 RVSPKRLS--SAKAWL-KDGL---VLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQC  192 (371)
Q Consensus       119 ~~~~~~~~--~~v~W~-~~~~---~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C  192 (371)
                      .+.+..+.  +.++|+ +++.   .+..... . .........+|.|         .+.  +.|.+...+.+++.+.|+|
T Consensus       316 ~a~GfyP~~~~~VtW~~rdg~~g~~~~~~~~-~-~~s~~~~~~DGTy---------svs--S~L~V~~~~~e~~g~~YTC  382 (401)
T 3f8u_B          316 LVSHFYPSGGLEVEWELRGGPGGRSQKAEGQ-R-WLSALRHHSDGSV---------SLS--GHLQPPPVTTEQHGARYAC  382 (401)
T ss_dssp             EEEEEBSSTTCEEEEEEESSSSCSCEECCSE-E-EECCCEECTTSCE---------EEE--EEEECCCCCGGGTTCEEEE
T ss_pred             EecCCcCCCCcEEEEEecCCCCCceeccccc-c-cccccccCCCceE---------EEE--EEEEEccCccccCCCEEEE
Confidence            99887553  689995 7652   1111110 0 0111122223333         222  4566665543341569999


Q ss_pred             Eeecc
Q psy14542        193 RGVNK  197 (371)
Q Consensus       193 ~~~~~  197 (371)
                      .+.+.
T Consensus       383 ~V~H~  387 (401)
T 3f8u_B          383 RIHHP  387 (401)
T ss_dssp             EEECT
T ss_pred             EEEcC
Confidence            99987

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.50  E-value=6.8e-12  Score=106.68  Aligned_cols=181  Identities=11%  Similarity=0.106  Sum_probs=103.7

Q ss_pred             cCCceeeecCCcEEEEEEecCCC-------------CCceEEEeeC--CEEeeeCCeeEEEEcccCc-----CCCeeEEE
Q psy14542        102 SSNQVVVDVGHRIELHCRVSPKR-------------LSSAKAWLKD--GLVLRRNSDEVLVLDRVQR-----EDAGMYQC  161 (371)
Q Consensus       102 ~~~~~~~~~g~~v~l~C~~~~~~-------------~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~-----~~~g~y~~  161 (371)
                      ..+...+..|++++|.|.....+             ....+.|++.  +..     ...+...+-..     ...|....
T Consensus       164 q~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~-----~~vliY~~g~~~q~~~~~~g~~~f  238 (401)
T 3f8u_B          164 HTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKG-----HLLLAATPGLNGQMPAAQEGAVAF  238 (401)
T ss_dssp             SCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEE-----EEEEEECTTSCCCCCCCCTTCEEE
T ss_pred             CCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCC-----cEEEEEeCCCccccccccCCeEEE
Confidence            34455568999999999986332             1257999973  211     11222211110     01121111


Q ss_pred             EEeCCc---eeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCC
Q psy14542        162 HIEDGK---YHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDE  238 (371)
Q Consensus       162 ~~~~~~---~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~  238 (371)
                      ...+..   .....+..|.|.+++.+| .|.|.|.+.+. .+......   .+.|.     .+|.+...+.....+..|+
T Consensus       239 ~~~~~~~~~g~~~g~~sL~I~~v~~~D-~G~Y~C~v~~~-~~~~~~~v---~L~V~-----~pP~V~v~p~~~~~~~~G~  308 (401)
T 3f8u_B          239 AAWDDDEPWGPWTGNGTFWLPRVQPFQ-EGTYLATIHLP-YLQGQVTL---ELAVY-----KPPKVSLMPATLARAAPGE  308 (401)
T ss_dssp             EEESCCCSSCCEEEEEEEEETTCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEE-----BCCEEEEESSSCCCCCTTC
T ss_pred             EeecccccccccCCcEEEEECcCCHhh-CceEEEEEEec-ccceeEEE---EEeec-----cCCeEeeccCcceeecCCC
Confidence            110000   022345789999999999 99999999887 55555455   67777     5676665543322134576


Q ss_pred             -eEEEEEEeec-CCC--CceEEE-eCCc---ccccC------CceEEecc------eEEEeccCC-CCCeEEEEEEEcCC
Q psy14542        239 -SVILPCSAQG-NPL--PTIKWY-KQDS---PVEES------DRIQRIGS------SLSISHVEE-SDSGVWNCVANNSE  297 (371)
Q Consensus       239 -~~~l~C~~~~-~p~--~~v~W~-~~~~---~~~~~------~~~~~~~~------~l~i~~~~~-~d~G~Y~C~a~n~~  297 (371)
                       .++|.|.+.+ +|.  +.++|. +++.   .+...      ......++      .|.+..... ++.+.|+|.+.|..
T Consensus       309 ~~vtL~C~a~GfyP~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~s  388 (401)
T 3f8u_B          309 APPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS  388 (401)
T ss_dssp             CCCCEEEEEEEEBSSTTCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTT
T ss_pred             ccEEEEEEecCCcCCCCcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCC
Confidence             7999999988 465  689995 7752   11111      11111222      344444432 34569999999876

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.50  E-value=8.1e-14  Score=96.99  Aligned_cols=86  Identities=15%  Similarity=0.239  Sum_probs=73.4

Q ss_pred             ecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEE
Q psy14542          7 VKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCH   77 (371)
Q Consensus         7 v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~   77 (371)
                      +..+|.+...+.. ..+.+|+.+.|.|.+ .+.|.+.+.|+|++..+...         ...+|.|.+++.+|+|.|+|.
T Consensus         5 ~~~~P~~~~~~~~-~~v~~G~~v~l~C~~-~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   82 (103)
T 3qp3_A            5 LDHAPRITLRMRS-HRVPCGQNTRFILNV-QSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAV   82 (103)
T ss_dssp             TCEEEEEEECCCC-EEEETTCCEEEEEEE-EEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCCCCEEEeCCcc-eEEeCCCeEEEEEEE-EecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEE
Confidence            3456788888877 899999999999954 56788899999999887654         345799999999999999999


Q ss_pred             EEcCCCCeEEEEEEEEe
Q psy14542         78 VSADDDSAQMSAQVILG   94 (371)
Q Consensus        78 ~~~~~~~~~~~~~l~v~   94 (371)
                      +.|..|.....+.|.|.
T Consensus        83 a~N~~G~~~~~~~l~V~   99 (103)
T 3qp3_A           83 CTNYKGEASDYATLDVT   99 (103)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEeCCCcEEEEEEEEEE
Confidence            99999988888888887

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.50  E-value=7.5e-14  Score=99.11  Aligned_cols=85  Identities=20%  Similarity=0.245  Sum_probs=71.7

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVS   79 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~   79 (371)
                      .+|.+...|.. ..+.+|+.++|.|.+ .+.|.+.+.|+|++..+...         ....|.|.+++.+|+|.|+|.+.
T Consensus         6 ~pp~i~~~~~~-~~v~~G~~v~l~C~~-~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   83 (114)
T 2cqv_A            6 SGPQIIQFPED-QKVRAGESVELFGKV-TGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVE   83 (114)
T ss_dssp             CCCEESCCCCS-EEEETTCCEEEEEEE-ESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEE
T ss_pred             CCCEEEeCCCC-eEEeCCCeEEEEEEE-EcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEE
Confidence            35677777777 899999999999955 46788999999998766533         36789999999999999999999


Q ss_pred             cCCCCeEEEEEEEEec
Q psy14542         80 ADDDSAQMSAQVILGG   95 (371)
Q Consensus        80 ~~~~~~~~~~~l~v~~   95 (371)
                      |..|.....+.|.|.+
T Consensus        84 N~~g~~~~~~~l~V~~   99 (114)
T 2cqv_A           84 NKLGSRQAQVNLTVVD   99 (114)
T ss_dssp             CSSCEEECCEEEEEEC
T ss_pred             ECCCcEEEEEEEEEEC
Confidence            9999888888888873

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.49  E-value=5.5e-15  Score=106.42  Aligned_cols=97  Identities=23%  Similarity=0.302  Sum_probs=80.6

Q ss_pred             eeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCc-eEEEeCCccccc--CCceEEe--------cceEEE
Q psy14542        210 RLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT-IKWYKQDSPVEE--SDRIQRI--------GSSLSI  278 (371)
Q Consensus       210 ~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~~~~--~~~~~~~--------~~~l~i  278 (371)
                      .|.|.     .+|.+.. +.... +..|+.+.|.|.+.|.|.|. +.|++++..+..  ..++...        .+.|.|
T Consensus         8 ~l~V~-----~~P~i~~-~~~~~-~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I   80 (122)
T 2cry_A            8 TLTVN-----GPPIISS-TQTQH-ALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTI   80 (122)
T ss_dssp             CCCCC-----SSCCEEE-ECCCC-CCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEEC
T ss_pred             EEEEe-----cCCCccC-CCeEE-EecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEE
Confidence            66777     7788777 65555 99999999999999999997 999999988775  3444431        237999


Q ss_pred             eccCCCCC-eEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542        279 SHVEESDS-GVWNCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       279 ~~~~~~d~-G~Y~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      .++..+|. |.|+|.|.|..|.....+.|.|..++.
T Consensus        81 ~~v~~~D~~G~Y~C~a~N~~G~~~~~~~l~V~~~~~  116 (122)
T 2cry_A           81 SNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEM  116 (122)
T ss_dssp             TTCCHHHHHSCEEEEEECSSCEEEEEECCCCSCSSC
T ss_pred             cCCChhhCCceEEEEEECCCCeEEEEEEEEECCCCC
Confidence            99999998 999999999999999999998887655

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.49  E-value=6.3e-13  Score=106.72  Aligned_cols=158  Identities=16%  Similarity=0.215  Sum_probs=94.7

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEeCC-----EEEe-----------e-C-------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKDG-----LVLR-----------R-N-------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~~-----~~~~-----------~-~-------------~~~~l~i~~~~~~   69 (371)
                      +.+.+|++++|.|..... .+...+.|||..     ..+.           . .             ...+|.|.+++.+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (226)
T 3mlr_H           10 EVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQAS   89 (226)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCGG
T ss_pred             EEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCcc
Confidence            789999999999976532 234679999821     1110           0 0             4456999999999


Q ss_pred             CCeEEEEEEEcCCC-------Ce--EEEEEEEEec---ceeeEec-CCceeeecCCcEEEEEEecCCCC-CceEEEeeCC
Q psy14542         70 DAGMYQCHVSADDD-------SA--QMSAQVILGG---ELVEIAS-SNQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDG  135 (371)
Q Consensus        70 d~G~Y~C~~~~~~~-------~~--~~~~~l~v~~---~~~~~~~-~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~  135 (371)
                      |+|.|.|.+.+..+       ..  .....|.|..   .+|.+.. .+...+..|+.+.|.|.+.+..+ ++.+.|  ++
T Consensus        90 DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W--~~  167 (226)
T 3mlr_H           90 DTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NS  167 (226)
T ss_dssp             GCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEE--GG
T ss_pred             cCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEE--CC
Confidence            99999999976421       00  1123555542   2333332 22222358999999999987533 478999  33


Q ss_pred             EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        136 LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      ..+....    .........+|         .+...  +.|.|.....+|  |.|+|.+.+.
T Consensus       168 ~~~~~~~----~~~~~~~~~~g---------~~~~~--s~L~i~~~~~~~--~~ytC~v~h~  212 (226)
T 3mlr_H          168 GALTSGV----HTFPAVLQSSG---------LYSLS--SVVTVPSSSLGT--QTYICNVNHK  212 (226)
T ss_dssp             GTCCTTE----EECCCEECTTS---------CEEEE--EEEEEEGGGTTT--CCCEEEEEEG
T ss_pred             ccccCCe----EeCCcEECCCC---------CEEEE--EEEEECHhHcCC--CeEEEEEEEC
Confidence            2221110    00000011223         33332  567887776544  8999999988

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.49  E-value=1.7e-13  Score=94.60  Aligned_cols=84  Identities=20%  Similarity=0.320  Sum_probs=71.1

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEEEEE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQCHV   78 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~   78 (371)
                      .+|.+...|.. ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+...          ...+|.|.+++.+|+|.|+|.+
T Consensus         4 ~~P~~~~~~~~-~~v~~G~~v~l~C~~-~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   81 (99)
T 1u2h_A            4 APPTFKVSLMD-QSVREGQDVIMSIRV-QGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKA   81 (99)
T ss_dssp             EEEEEEECCCC-EEEETTCCEEEEEEE-EEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCEEEEcCCc-eEecCCCEEEEEEEE-EEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEE
Confidence            36778888887 899999999999955 56778899999999877543          2237999999999999999999


Q ss_pred             EcCCCCeEEEEEEEEe
Q psy14542         79 SADDDSAQMSAQVILG   94 (371)
Q Consensus        79 ~~~~~~~~~~~~l~v~   94 (371)
                      .|..|.....+.|.|.
T Consensus        82 ~N~~g~~~~~~~l~V~   97 (99)
T 1u2h_A           82 VNEYGARQCEARLEVR   97 (99)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EECCCceeEEEEEEEE
Confidence            9999888888888876

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=1.1e-13  Score=95.65  Aligned_cols=85  Identities=19%  Similarity=0.363  Sum_probs=73.0

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCcCCCeEEEEEEEc
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAGMYQCHVSA   80 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~   80 (371)
                      ..+|.+...|.. ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+...       .+.+|.|.+++.+|+|.|+|.+.|
T Consensus         6 ~~~P~i~~~p~~-~~v~~G~~~~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n   83 (100)
T 2edj_A            6 SGPPIILQGPAN-QTLAVDGTALLKCKA-TGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATS   83 (100)
T ss_dssp             CSSCEEEECCCC-EEEESSSEEEECCEE-ECSSCCEEEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEEEEC
T ss_pred             CCCCEEEeCcCC-EEEcCCCcEEEEEEE-EEcCCCEEEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEEEEc
Confidence            346788888887 899999999999955 47788899999999887632       456899999999999999999999


Q ss_pred             CCCCeEEEEEEEEe
Q psy14542         81 DDDSAQMSAQVILG   94 (371)
Q Consensus        81 ~~~~~~~~~~l~v~   94 (371)
                      ..|.....+.|.|.
T Consensus        84 ~~g~~~~~~~l~V~   97 (100)
T 2edj_A           84 SSGETSWSAVLDVT   97 (100)
T ss_dssp             SSCCCBCCEEEEEE
T ss_pred             CCCCEEEEEEEEEe
Confidence            99988888888887

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.49  E-value=6.5e-13  Score=105.01  Aligned_cols=168  Identities=15%  Similarity=0.237  Sum_probs=98.0

Q ss_pred             eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc------ceEEEE
Q psy14542        106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS------GELIIH  179 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~------~~l~i~  179 (371)
                      ..+.+|++++|.|.+.+..  ..+.|+|....  ......+.. +.     +    ....+++.+..+      ..|.|.
T Consensus        11 v~v~~G~~v~L~C~~~~~~--~~v~W~r~~~~--~~~~~~~~~-~~-----~----~~~~~R~~~~~~~~~~~~~~L~I~   76 (207)
T 1ypz_E           11 LSLHEGTDSALRCNFTTTM--RSVQWFRQNSR--GSLISLFYL-AS-----G----TKENGRLKSAFDSKERRYSTLHIR   76 (207)
T ss_dssp             EEEETTCCEEEEEEESSCC--SEEEEEEECTT--SCCEEEEEE-SS-----E----EEEETTEEEEECTTTCSEEEEEEC
T ss_pred             EEEccCCcEEEEEEEeCCC--eEEEEEEeCCC--CCeEEEEEE-cc-----C----CccCCCEEEEeccCCCCEEEEEEC
Confidence            3458999999999998654  37999985310  000111111 00     0    001234444322      579999


Q ss_pred             EeecCCccceeEEEeeccccc--------eeeeeeccceeeeecch-hccccceeeeeeeeeeeecCCeEEEEEEeecC-
Q psy14542        180 QVDESDRYRSYQCRGVNKLTG--------ASLLSVNRGRLSLTENK-RLLSAAKMFEKHRILNVKKDESVILPCSAQGN-  249 (371)
Q Consensus       180 ~~~~~d~~g~y~C~~~~~~~~--------~~~~~~~~~~l~v~~~~-~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-  249 (371)
                      +++.+| +|.|.|.+.+. .+        ..........|.|.... ...+|.+.        +..+ .+.|.|.+.+. 
T Consensus        77 ~v~~~D-~G~Y~C~~~~~-~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P~v~--------~~~~-~~~l~C~~~g~~  145 (207)
T 1ypz_E           77 DAQLED-SGTYFCAADTW-HISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVF--------IMKN-GTNVACLVKDFY  145 (207)
T ss_dssp             SCCGGG-CEEEEEEEECB-CCCTTCCCCCCCCEECCCEEEEEECCCCCCCCCEEE--------EEEE-TTEEEEEEEEES
T ss_pred             CCCHHH-CEEEEEEEecC-CcccccccccceeeecCccEEEEccCCCCCCCCeEE--------EeCC-CCeEEEEEeeEe
Confidence            999999 99999999876 21        00000011266666321 01123222        1112 26899999874 


Q ss_pred             CC-CceEEEeCCcccccCCc-eE-EecceEEEeccCC-CCCeEEEEEEEcCCCC
Q psy14542        250 PL-PTIKWYKQDSPVEESDR-IQ-RIGSSLSISHVEE-SDSGVWNCVANNSEGQ  299 (371)
Q Consensus       250 p~-~~v~W~~~~~~~~~~~~-~~-~~~~~l~i~~~~~-~d~G~Y~C~a~n~~g~  299 (371)
                      |. +.+.|+++ ..+..... .. ..++.+.+..... +|.|.|+|.|.|..+.
T Consensus       146 P~~~~v~W~~~-~~l~~~~~~~~~~~~g~y~~~~~~~~~~~~~ytC~v~~~~~~  198 (207)
T 1ypz_E          146 PKEVTISLRSS-KKIVEFDPAIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSET  198 (207)
T ss_dssp             SSCCEEEEECS-SEEEECCCEEEECTTSSEEEEECEEESSTTTCEEEEEETTEE
T ss_pred             CCCeEEEEecC-CcccCCccceEEcCCCcEEEEEeecccCCCcEEEEEEECCcc
Confidence            54 78999999 66543322 11 2345666655544 6789999999998764

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=1.2e-13  Score=95.18  Aligned_cols=80  Identities=26%  Similarity=0.386  Sum_probs=66.3

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVS   79 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~   79 (371)
                      .++.+...+.. ..+.+|+.+.|.|.+   .|.+.+.|+|+|..+...         ....|.|.+++.+|+|.|+|.+.
T Consensus         6 ~p~~~~~~~~~-~~v~~G~~v~l~C~v---~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~   81 (100)
T 2yuz_A            6 SGLKILTPLTD-QTVNLGKEICLKCEI---SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPD   81 (100)
T ss_dssp             CCCCCSBCCCC-EEEETTSCCCEEEEC---SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEES
T ss_pred             CCCEEeccCCc-eEEcCCCCEEEEEEe---CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEc
Confidence            35667777777 899999999999966   677889999999887654         33589999999999999999999


Q ss_pred             cCCCCeEEEEEEEEe
Q psy14542         80 ADDDSAQMSAQVILG   94 (371)
Q Consensus        80 ~~~~~~~~~~~l~v~   94 (371)
                      |.  .....+.|.|.
T Consensus        82 N~--~~~~~a~L~V~   94 (100)
T 2yuz_A           82 AY--NVTLPAKVHVI   94 (100)
T ss_dssp             SS--CCCEEEEEEEE
T ss_pred             CC--CeeEEEEEEEe
Confidence            87  45667777777

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.49  E-value=1.8e-13  Score=92.72  Aligned_cols=82  Identities=18%  Similarity=0.403  Sum_probs=66.3

Q ss_pred             ceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCce-
Q psy14542        223 AKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDK-  301 (371)
Q Consensus       223 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-  301 (371)
                      .+...+.... +..|+.+.|.|.+.|.|.+.+.|++++..+....     .+.|.|.++..+|+|.|+|.|.|..|... 
T Consensus         5 ~i~~~p~~~~-v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s   78 (91)
T 3bfo_A            5 QICVEPTSQK-LMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-----KKLYMVPYVDLEHQGTYWCHVYNDRDSQDS   78 (91)
T ss_dssp             EEEECCCCEE-ECTTSCEEEECEEECSSCCEEEEEETTEECTTCC-----SSEEEESSCCGGGCEEEEEEEECSSCEEEC
T ss_pred             EEEECCCccE-ecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCC-----CCeEEECCCCHHhCEEEEEEEEcCCCCEEe
Confidence            3334444445 8999999999999999999999999998876553     46899999999999999999999999743 


Q ss_pred             eEEEEEEec
Q psy14542        302 MQLFIQYAH  310 (371)
Q Consensus       302 ~~~~l~v~~  310 (371)
                      ..+.|.|.+
T Consensus        79 ~~~~l~V~~   87 (91)
T 3bfo_A           79 KKVEIIIDE   87 (91)
T ss_dssp             CCEEEEEC-
T ss_pred             eeEEEEEeh
Confidence            556776654

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.49  E-value=1.6e-13  Score=93.09  Aligned_cols=84  Identities=26%  Similarity=0.469  Sum_probs=71.0

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCeE-E
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQ-M   87 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~   87 (371)
                      .++.+...|.. ..+.+|+++.|.|. ..+.|.+.+.|+|++..+.......|.|.+++.+|+|.|+|.+.|..|... .
T Consensus         2 ~~~~i~~~p~~-~~v~~G~~~~l~C~-~~g~p~p~i~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~   79 (91)
T 3bfo_A            2 SKLQICVEPTS-QKLMPGSTLVLQCV-AVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSK   79 (91)
T ss_dssp             CCCEEEECCCC-EEECTTSCEEEECE-EECSSCCEEEEEETTEECTTCCSSEEEESSCCGGGCEEEEEEEECSSCEEECC
T ss_pred             CceEEEECCCc-cEecCCCcEEEEEE-eccCCCCEEEEEcCCeeCCcCCCCeEEECCCCHHhCEEEEEEEEcCCCCEEee
Confidence            35778888888 88999999999995 456788899999999988766677999999999999999999999887543 4


Q ss_pred             EEEEEEe
Q psy14542         88 SAQVILG   94 (371)
Q Consensus        88 ~~~l~v~   94 (371)
                      .+.|.|.
T Consensus        80 ~~~l~V~   86 (91)
T 3bfo_A           80 KVEIIID   86 (91)
T ss_dssp             CEEEEEC
T ss_pred             eEEEEEe
Confidence            5677665

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=6.1e-14  Score=98.40  Aligned_cols=90  Identities=18%  Similarity=0.278  Sum_probs=69.7

Q ss_pred             ccceeeeeeeeeeeecCCeEEEEEEeecC---CCCceEEEeCCc-cccc--CCceEE----------ecceEEEeccCCC
Q psy14542        221 SAAKMFEKHRILNVKKDESVILPCSAQGN---PLPTIKWYKQDS-PVEE--SDRIQR----------IGSSLSISHVEES  284 (371)
Q Consensus       221 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~---p~~~v~W~~~~~-~~~~--~~~~~~----------~~~~l~i~~~~~~  284 (371)
                      .+.+...+.... +.+|++++|.|.+.+.   |.|.|.|+|+.. .+..  +.++..          ....|.|.++..+
T Consensus        12 ~~~f~~~P~~v~-V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   90 (118)
T 2edn_A           12 TGVFLKKPDSVS-VETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLG   90 (118)
T ss_dssp             SSSCSBCCCCCE-EETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTT
T ss_pred             cceEEECCCCeE-EeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChh
Confidence            344555566666 9999999999999875   789999999742 1111  122221          2467999999999


Q ss_pred             CCeEEEEEEEcCCCCceeEEEEEEecC
Q psy14542        285 DSGVWNCVANNSEGQDKMQLFIQYAHG  311 (371)
Q Consensus       285 d~G~Y~C~a~n~~g~~~~~~~l~v~~~  311 (371)
                      |+|.|+|+|.|..|..+..+.|.|..+
T Consensus        91 D~G~Y~Cevsn~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           91 DRGYYRLEVKAKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             TCSCEEEEEECSSCEEEEEECCEEECC
T ss_pred             hCEEEEEEEEEcCCcEEEEEEEEEEcC
Confidence            999999999999999999999999874

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.48  E-value=1.9e-12  Score=103.70  Aligned_cols=158  Identities=17%  Similarity=0.229  Sum_probs=94.0

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeC--C---EEEee----------C----------CeeEEEEccC
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKD--G---LVLRR----------N----------SDEVLVLDRV   66 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~--~---~~~~~----------~----------~~~~l~i~~~   66 (371)
                      +...|.. +.+.+|++++|.|.+.... ....+.|+|.  +   ..+..          .          ...+|.|.++
T Consensus         4 v~q~p~~-v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   82 (229)
T 1hxm_A            4 LVPEHQT-VPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAP   82 (229)
T ss_dssp             EEESCSE-EEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSC
T ss_pred             cEeCCCE-EEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcC
Confidence            3444555 8899999999999765221 2457999983  1   22210          0          3458999999


Q ss_pred             CcCCCeEEEEEEEcCC------CC--eEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCC-CceEEEeeCCEE
Q psy14542         67 QREDAGMYQCHVSADD------DS--AQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLV  137 (371)
Q Consensus        67 ~~~d~G~Y~C~~~~~~------~~--~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~  137 (371)
                      +.+|+|.|.|.+.+..      +.  ......|.|.. .......|...+.. ..+.|.|.+.+..+ +..+.|+++ ..
T Consensus        83 ~~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~-~~~~~~~P~v~~~~-~~~~L~C~~~g~~P~~i~v~W~~~-~~  159 (229)
T 1hxm_A           83 SERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEP-RSQPHTKPSVFVMK-NGTNVACLVKEFYPKDIRINLVSS-KK  159 (229)
T ss_dssp             CGGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEEC-CSCCCBCCEEEEEE-ETTEEEEEEESCBSSCCEEEEECS-SE
T ss_pred             CHhHCeEEEEEEecCCCcccccchhhcCccEEEEEec-cCCCCcCCcEEEcC-CCCeEEEEEEEEeCCCEEEEEecC-CE
Confidence            9999999999998753      11  11224666662 11111223333322 23589999988744 359999998 66


Q ss_pred             eeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542        138 LRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      +...... ...     ...|         .+.+.       ......+ .|.|+|.+.+.
T Consensus       160 ~~~~~~~-~~~-----~~dg---------~y~~~-------~~~~~~~-~~~ytC~V~h~  196 (229)
T 1hxm_A          160 ITEFDPA-IVI-----SPSG---------KYNAV-------KLGKYED-SNSVTCSVQHD  196 (229)
T ss_dssp             EEECCCE-EEE-----CTTS---------SEEEE-------EEEEETT-TTTCEEEEEET
T ss_pred             EecCccc-eEE-----CCCC---------cEEEE-------ECcccCC-CCcEEEEEEeC
Confidence            5533211 110     1222         22221       1123366 89999999987

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.48  E-value=5.3e-14  Score=95.87  Aligned_cols=82  Identities=16%  Similarity=0.240  Sum_probs=67.4

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC--EEEeeC-------CeeEEEEccCCcCCCeEEEEEEEc
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG--LVLRRN-------SDEVLVLDRVQREDAGMYQCHVSA   80 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~--~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~   80 (371)
                      +|.+...+.. ..+.+|+.+.|.|. ..+.|.+.+.|++++  ..+...       ....|.|.+++.+|+|.|+|.+.|
T Consensus         2 ~P~i~~~~~~-~~v~~G~~~~l~C~-~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   79 (93)
T 1wit_A            2 KPKILTASRK-IKIKAGFTHNLEVD-FIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKN   79 (93)
T ss_dssp             CCEECCCCCE-EEECTTBCCEEEEE-EECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEE
T ss_pred             CCeEEcCCCc-eEEeCCCEEEEEEE-EEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEc
Confidence            4566555555 89999999999995 557889999999998  554322       557899999999999999999999


Q ss_pred             CCCCeEEEEEEEE
Q psy14542         81 DDDSAQMSAQVIL   93 (371)
Q Consensus        81 ~~~~~~~~~~l~v   93 (371)
                      ..|.....+.|.|
T Consensus        80 ~~G~~~~~~~l~V   92 (93)
T 1wit_A           80 ELGEDEAIFEVIV   92 (93)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCeEEEEEEEEE
Confidence            9998888888776

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=5.8e-14  Score=96.94  Aligned_cols=85  Identities=21%  Similarity=0.283  Sum_probs=71.4

Q ss_pred             ecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCCcCCCeEEEEEEEc
Q psy14542          7 VKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQCHVSA   80 (371)
Q Consensus         7 v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~   80 (371)
                      +..+|.+...|.. ..+.+|+++.|.|.+ .+.|.+.+.|++++..+...      ....|.|.+++.+|+|.|+|.+.|
T Consensus         8 ~~~~P~~~~~~~~-~~v~~G~~v~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   85 (99)
T 2yr3_A            8 MEVAPSFSSVLKD-CAVIEGQDFVLQCSV-RGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAEN   85 (99)
T ss_dssp             CCEEEEEEECCCC-EEECTTCCEEEECEE-EEESCCCCEEEESSSBCSSCCCEEETTEEEEEECSCCTTCCBCEEEEEEC
T ss_pred             cccCCceeecCCC-CEEeCCCeEEEEEEE-eeeCCCeEEEEECCEECcccceEeeCCeEEEEECCCChhhCEEEEEEEEE
Confidence            3456788888887 899999999999965 56788899999998766543      457899999999999999999999


Q ss_pred             CCCCeEEEEEEEE
Q psy14542         81 DDDSAQMSAQVIL   93 (371)
Q Consensus        81 ~~~~~~~~~~l~v   93 (371)
                      ..|.....+.|.|
T Consensus        86 ~~g~~~~~~~l~V   98 (99)
T 2yr3_A           86 ALGQVSCSAWVTV   98 (99)
T ss_dssp             SSCEEEEECCEEE
T ss_pred             CCCeEEEEEEEEE
Confidence            9988877777766

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.48  E-value=3e-12  Score=97.59  Aligned_cols=154  Identities=10%  Similarity=0.138  Sum_probs=98.5

Q ss_pred             eeeecCCcEEEEEEecCCCCCceEEEeeC-CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542        106 VVVDVGHRIELHCRVSPKRLSSAKAWLKD-GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES  184 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~  184 (371)
                      ..+.+|+++.|.|.+....+ ..+.|.-. ++.....                       ++.    ....|.|.+++  
T Consensus         9 ~~V~~G~Sv~l~Cs~~c~~p-~~~~~~t~l~~~~~~~-----------------------~~~----~~~~l~l~~vs--   58 (185)
T 1iam_A            9 VILPRGGSVLVTCSTSCDQP-KLLGIETPLPKKELLL-----------------------PGN----NRKVYELSNVQ--   58 (185)
T ss_dssp             EEEETTEEEEEEEEECSSSC-SEEEEECSSCEEEECS-----------------------SSS----SEEEEEEEEEC--
T ss_pred             cEEeCCCCEEEEEEccCCCC-ccceEEeeCCCccEec-----------------------cCC----ceeEEEEEecC--
Confidence            34589999999999975443 45777531 1111100                       000    01468899997  


Q ss_pred             CccceeEEEeeccccceeeeeeccceeeeecchhccccce-eeeeeeeeeeecCCeEEEEEEeec-CCCC--ceEEEeCC
Q psy14542        185 DRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAK-MFEKHRILNVKKDESVILPCSAQG-NPLP--TIKWYKQD  260 (371)
Q Consensus       185 d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~-~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~v~W~~~~  260 (371)
                      + .|.|.|.+... ........   .+.|.     .+|.. .+.+.... +.+|+.++|.|.+.| .|..  .|+|++++
T Consensus        59 ~-~g~y~C~~~c~-~~~~~~~~---~l~V~-----~~P~~v~i~~~~~~-~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~  127 (185)
T 1iam_A           59 E-DSQPMCYSNCP-DGQSTAKT---FLTVY-----WTPERVELAPLPSW-QPVGKQLTLRCQVEGGAPRAQLTVVLLRGE  127 (185)
T ss_dssp             S-CBCCEEEEECS-SCEEEEEC---EEEEE-----BCCSEEEECCCCSE-ECTTSEEEEEEEEECCBCGGGEEEEEEETT
T ss_pred             c-CCEEEEEEECC-CCceEEEE---EEEEe-----CCCCCCEEccCCcc-ccCCCcEEEEEEcCCccCCCCcEEEEEeCC
Confidence            3 58999998765 44444444   77777     34433 23333333 899999999999998 4554  48999999


Q ss_pred             cccccCCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        261 SPVEESDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       261 ~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      ..+....... ..+.+|.+.....+|...|+|+|.|..+..
T Consensus       128 ~~l~~~~~~~~~~~~tl~~~~~reD~g~~~sC~A~~~l~~~  168 (185)
T 1iam_A          128 KELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQ  168 (185)
T ss_dssp             EEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGG
T ss_pred             EEcccccCCCccccEEEEEeceeccCCCeEEEEEEecCccc
Confidence            8775422100 112357777666767779999999988743

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.47  E-value=2.8e-13  Score=93.50  Aligned_cols=85  Identities=18%  Similarity=0.324  Sum_probs=71.9

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEE
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHV   78 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~   78 (371)
                      ..+|.+...|.. ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+...         ...+|.|.+++.+|+|.|+|.+
T Consensus         4 ~~~P~i~~~~~~-~~v~~G~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a   81 (99)
T 3puc_A            4 SSKPVIVTGLQD-TTVSSDSVAKFAVKA-TGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTV   81 (99)
T ss_dssp             CEEEEEEECCCC-EEEESSSCEEEEEEE-EEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCCEEEecCcc-EEEeCCCcEEEEEEE-EecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEE
Confidence            456778888877 899999999999955 56778899999999887654         3347999999999999999999


Q ss_pred             EcCCCCeEEEEEEEEe
Q psy14542         79 SADDDSAQMSAQVILG   94 (371)
Q Consensus        79 ~~~~~~~~~~~~l~v~   94 (371)
                      .|..|.....+.|.|.
T Consensus        82 ~n~~g~~~~~~~l~V~   97 (99)
T 3puc_A           82 KNSAGSVSSSCKLTIK   97 (99)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EeCCCcEeEEEEEEEE
Confidence            9998888888888775

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.47  E-value=1.2e-13  Score=95.56  Aligned_cols=75  Identities=31%  Similarity=0.568  Sum_probs=65.0

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccCCce---E--EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI---Q--RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~---~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      +..|+.+.|.|.+.|.|.+.+.|++++..+....+.   .  ..++.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus        20 v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V   99 (100)
T 3caf_A           20 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV   99 (100)
T ss_dssp             ECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEEEEEEE
Confidence            889999999999999999999999999887665432   2  23358999999999999999999999999888888876

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.47  E-value=1.2e-12  Score=107.78  Aligned_cols=194  Identities=10%  Similarity=0.138  Sum_probs=108.4

Q ss_pred             CceeeecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEE
Q psy14542        104 NQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELI  177 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~  177 (371)
                      +...+.+|++++|.|.+.+. .....+.|++....  ......+.+....   ...+......+++.+..     +..|.
T Consensus        31 ~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~--~~~~~l~~~~~~~---~~~~~~~~~~~R~~~~~~~~~~~~sL~  105 (267)
T 3u1s_H           31 GAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATG--QGLEWMGWMSHEG---DKTGLAQKFQGRVTITRDSGASTVYME  105 (267)
T ss_dssp             CCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTT--SCCEEEEEECTTS---SCEEECGGGTTTEEEEECGGGCCEEEE
T ss_pred             CCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCC--CCcEEEEEEeCCC---CceecCcccCCcEEEEEcCCCCEEEEE
Confidence            34445899999999999652 12268999984210  0111111221100   00000000123444332     24599


Q ss_pred             EEEeecCCccceeEEEeeccc-----cc------------e-ee---eeeccceeeeecchhccccceeeeeeeeeeeec
Q psy14542        178 IHQVDESDRYRSYQCRGVNKL-----TG------------A-SL---LSVNRGRLSLTENKRLLSAAKMFEKHRILNVKK  236 (371)
Q Consensus       178 i~~~~~~d~~g~y~C~~~~~~-----~~------------~-~~---~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~  236 (371)
                      |.+++.+| +|.|.|.+.+.-     .+            . ..   .......+.|.... ..+|.+........ ...
T Consensus       106 I~~v~~~D-sG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~-~~~P~v~~~~~~~~-~~~  182 (267)
T 3u1s_H          106 LRGLTADD-TAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSAS-TKGPSVFPLAPSSK-STS  182 (267)
T ss_dssp             ECSCCGGG-CEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCC-CBCCEEEEECCCGG-GEE
T ss_pred             ECCCChhh-CEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCC-CCCCEEEEecCCcc-cCC
Confidence            99999999 999999986210     00            0 10   01112245554221 13455543232223 467


Q ss_pred             CCeEEEEEEeec-CC-CCceEEEeCCcccccC----------CceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542        237 DESVILPCSAQG-NP-LPTIKWYKQDSPVEES----------DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL  304 (371)
Q Consensus       237 g~~~~l~C~~~~-~p-~~~v~W~~~~~~~~~~----------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  304 (371)
                      |+.++|.|.+.+ +| .+.+.|  ++..+..+          +......+.|.|.....+| |.|+|.+.|..+......
T Consensus       183 g~~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~  259 (267)
T 3u1s_H          183 GGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDK  259 (267)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEE
T ss_pred             CCcEEEEEEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCcceEE
Confidence            899999999987 45 467999  65544321          1111122468898888888 999999999887765555


Q ss_pred             EEEE
Q psy14542        305 FIQY  308 (371)
Q Consensus       305 ~l~v  308 (371)
                      .+.+
T Consensus       260 ~~~~  263 (267)
T 3u1s_H          260 KVEP  263 (267)
T ss_dssp             ECCC
T ss_pred             Eccc
Confidence            5443

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.47  E-value=6.6e-13  Score=91.37  Aligned_cols=75  Identities=24%  Similarity=0.398  Sum_probs=64.2

Q ss_pred             eecCCeEEEEEEee-cCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542        234 VKKDESVILPCSAQ-GNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA  309 (371)
Q Consensus       234 ~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  309 (371)
                      +..|+.+.|.|.+. +.|.+.+.|++++...... +....++.|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus        22 v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~   97 (98)
T 1gl4_B           22 VRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS-RAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ   97 (98)
T ss_dssp             ECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCT-TEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             EecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCc-eeecCCCEEEEeCCChhhCEEEEEEecCCCCccccEEEEEEe
Confidence            89999999999998 6899999999986544333 334557799999999999999999999999999888888875

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.47  E-value=7.9e-13  Score=93.61  Aligned_cols=93  Identities=15%  Similarity=0.304  Sum_probs=75.7

Q ss_pred             eeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe-cc---eEEEeccCCCC
Q psy14542        210 RLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-GS---SLSISHVEESD  285 (371)
Q Consensus       210 ~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~-~~---~l~i~~~~~~d  285 (371)
                      .|.|..    .+|.+...+.... +..|+.+.|.|.+.+.  |.+.|++++..+..+.++... ++   .|.|.++..+|
T Consensus        12 ~l~V~~----~pp~~~~~~~~~~-v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
T 2edh_A           12 MLTVRA----LPIKFTEGLRNEE-ATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAED   84 (113)
T ss_dssp             CCCCCC----SCCCEEECCCCCE-ECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTT
T ss_pred             EEEEEc----CCCcccccCCceE-EeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhh
Confidence            666663    3356666666666 9999999999999765  789999999999887777632 33   79999999999


Q ss_pred             CeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542        286 SGVWNCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       286 ~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      +|.|+|.|    |.....+.|.|..+|.
T Consensus        85 ~G~Y~C~a----~~~~~~~~l~V~~~p~  108 (113)
T 2edh_A           85 AGEYLCMC----GKERTSAMLTVRAMPS  108 (113)
T ss_dssp             CEEEEEEE----TTEEEEEEEEECCCCC
T ss_pred             CEEEEEEe----CCCCEEEEEEEeCCCC
Confidence            99999999    7788889999988776

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.46  E-value=2.3e-13  Score=96.58  Aligned_cols=85  Identities=20%  Similarity=0.271  Sum_probs=68.7

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecC--CCCCCeeEEEeCC---------EEEee--C-------CeeEEEEccCCcC
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSP--KRLSSAKAWLKDG---------LVLRR--N-------SDEVLVLDRVQRE   69 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~--~~~~~~~~W~~~~---------~~~~~--~-------~~~~l~i~~~~~~   69 (371)
                      .+.+...|.. +.+.+|++++|.|.+..  +.|.+.|.|||+.         ..+..  .       ...+|.|.+++.+
T Consensus         7 ~~~F~~~P~~-v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   85 (126)
T 2dav_A            7 GILFIEKPQG-GTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDN   85 (126)
T ss_dssp             SCSCCSCCCC-CEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred             ccEEEEcCCC-eEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcc
Confidence            3556777877 89999999999997653  2588999999973         21111  0       2588999999999


Q ss_pred             CCeEEEEEEEcCCCCeEEEEEEEEec
Q psy14542         70 DAGMYQCHVSADDDSAQMSAQVILGG   95 (371)
Q Consensus        70 d~G~Y~C~~~~~~~~~~~~~~l~v~~   95 (371)
                      |+|.|+|++.|..+..+..+.|+|..
T Consensus        86 DaG~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           86 FAGNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             SCEEEEEEEECSSCEEEECCEEEEEC
T ss_pred             cCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            99999999999998888999999884

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.45  E-value=3e-13  Score=96.16  Aligned_cols=85  Identities=16%  Similarity=0.300  Sum_probs=72.2

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEE
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQC   76 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C   76 (371)
                      ..+|.+...|.. ..+.+|++++|.|. ..+.|.+.+.|++++..+...           ...+|.|.+++.+|+|.|+|
T Consensus        13 ~~~p~f~~~p~~-~~v~~G~~v~L~C~-~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   90 (116)
T 2kkq_A           13 KRAPMFIYKPQS-KKVLEGDSVKLECQ-ISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTV   90 (116)
T ss_dssp             CBCCCBSSCCCC-EEEETTEEEEEEEE-BCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEE
T ss_pred             CCCCeEEeCCCc-EEEeCCCcEEEEEE-EeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEE
Confidence            346777778888 89999999999995 457788899999999887642           22389999999999999999


Q ss_pred             EEEcCCCCeEEEEEEEEe
Q psy14542         77 HVSADDDSAQMSAQVILG   94 (371)
Q Consensus        77 ~~~~~~~~~~~~~~l~v~   94 (371)
                      .+.|..|.....+.|.|.
T Consensus        91 ~a~N~~G~~~~~~~l~V~  108 (116)
T 2kkq_A           91 SAVNEAGVTTCNTRLDVT  108 (116)
T ss_dssp             EEEETTEEEEEEEEEEEE
T ss_pred             EEEcCCCeEEEEEEEEEe
Confidence            999999888888888887

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.45  E-value=4.1e-13  Score=96.56  Aligned_cols=80  Identities=23%  Similarity=0.399  Sum_probs=66.1

Q ss_pred             eecCCeEEEEEEeecC--CCCceEEEeCCccccc-----CCc-e------EEecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        234 VKKDESVILPCSAQGN--PLPTIKWYKQDSPVEE-----SDR-I------QRIGSSLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~--p~~~v~W~~~~~~~~~-----~~~-~------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      +..|+.+.|.|.+.|.  |.+.+.|++++..+..     ..+ .      ....+.|.|.++..+|+|.|+|.|.|..|.
T Consensus        20 v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~   99 (122)
T 3s35_X           20 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT   99 (122)
T ss_dssp             EEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECSSCE
T ss_pred             EecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccCCCc
Confidence            8899999999999984  4568999999885431     111 1      123457999999999999999999999999


Q ss_pred             ceeEEEEEEecCcc
Q psy14542        300 DKMQLFIQYAHGKY  313 (371)
Q Consensus       300 ~~~~~~l~v~~~p~  313 (371)
                      ....+.|.|.++|.
T Consensus       100 ~~~~~~l~V~~~p~  113 (122)
T 3s35_X          100 KKNSTFVRVHEKPF  113 (122)
T ss_dssp             EEEEEEEEEEEEEC
T ss_pred             eEEEEEEEEeccCe
Confidence            99999999999888

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.45  E-value=5.6e-13  Score=93.56  Aligned_cols=91  Identities=19%  Similarity=0.285  Sum_probs=70.8

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCc-ccc-------cCCceEE-----ecceEEEeccCCCCC
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDS-PVE-------ESDRIQR-----IGSSLSISHVEESDS  286 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~-~~~-------~~~~~~~-----~~~~l~i~~~~~~d~  286 (371)
                      ..|.+...+.... +..|+.+.|.|.+.+.|.+.+.|++++. .+.       ...++..     ....|.|.++..+|+
T Consensus         5 ~~p~~~~~~~~~~-v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~   83 (108)
T 3m45_A            5 GSQGQFPLTQNVT-VVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDE   83 (108)
T ss_dssp             ---CCCEECCCEE-EETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGC
T ss_pred             cCCCccccCCeeE-EEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHC
Confidence            3455555566666 9999999999999999999999998775 211       2234443     345799999999999


Q ss_pred             eEEEEEEEcCCCCceeEEEEEEecCc
Q psy14542        287 GVWNCVANNSEGQDKMQLFIQYAHGK  312 (371)
Q Consensus       287 G~Y~C~a~n~~g~~~~~~~l~v~~~p  312 (371)
                      |.|+|.|.| .|.....+.|.|..+|
T Consensus        84 G~Y~C~~~n-~~~~~~~~~L~V~~~P  108 (108)
T 3m45_A           84 GQYTCSLFT-MPVKTSKAYLTVLGVP  108 (108)
T ss_dssp             EEEEEEECS-SSCEEEEEEEEEECCC
T ss_pred             eEEEEEEEc-CCCcEEEEEEEEEcCC
Confidence            999999999 8888899999998765

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=3.8e-13  Score=93.52  Aligned_cols=88  Identities=19%  Similarity=0.289  Sum_probs=72.4

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe--c--ceEEEeccCCCCCeEEEEEEEc
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--G--SSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      .+|.+...+.... +..|+.+.|.|.+.+ |.+.+.|++++..+....++...  +  ..|.|.++..+|+|.|+|.|.|
T Consensus         7 ~pp~~~~~~~~~~-v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   84 (103)
T 2edf_A            7 GPAAIIKPLEDQW-VAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA   84 (103)
T ss_dssp             CCCCEEECCCCEE-ECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS
T ss_pred             CCcEEEecCCccE-EcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc
Confidence            4566666666666 999999999999987 78899999999998877776632  2  2699999999999999999998


Q ss_pred             CCCCceeEEEEEEecCcc
Q psy14542        296 SEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       296 ~~g~~~~~~~l~v~~~p~  313 (371)
                          ...++.|.|..+|.
T Consensus        85 ----~~~~~~l~V~~~p~   98 (103)
T 2edf_A           85 ----SKSTASLHVEEKAS   98 (103)
T ss_dssp             ----CEEEEEEEECCCSS
T ss_pred             ----CCcEEEEEEeCCCC
Confidence                47778888887776

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.45  E-value=5.3e-13  Score=92.77  Aligned_cols=85  Identities=13%  Similarity=0.145  Sum_probs=68.4

Q ss_pred             ceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCC--ceEEec----ceEEEeccCCCCCeEEEEEEEcC
Q psy14542        223 AKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD--RIQRIG----SSLSISHVEESDSGVWNCVANNS  296 (371)
Q Consensus       223 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~  296 (371)
                      .+...+.... +..|+.+.|.|.+.+ |.+.+.|++++..+....  ++....    ..|.|.++..+|+|.|+|.|.| 
T Consensus         9 ~~~~~~~~~~-v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n-   85 (103)
T 1x44_A            9 MVTKQLEDTT-AYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG-   85 (103)
T ss_dssp             CCSBCCCCEE-EETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT-
T ss_pred             eeeccCCCEE-EECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC-
Confidence            3555555555 899999999999977 778999999999888776  444322    5799999999999999999987 


Q ss_pred             CCCceeEEEEEEecCcc
Q psy14542        297 EGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       297 ~g~~~~~~~l~v~~~p~  313 (371)
                         ...++.|.|..+|.
T Consensus        86 ---~~~~~~l~V~~~p~   99 (103)
T 1x44_A           86 ---GQSSAKLSVDLKSG   99 (103)
T ss_dssp             ---EEEEEEEEEECCCS
T ss_pred             ---CcEEEEEEEeCCCC
Confidence               56777888887665

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.45  E-value=2.7e-13  Score=93.34  Aligned_cols=87  Identities=18%  Similarity=0.231  Sum_probs=68.9

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----CeeEEEEccCCcCCCeEEEEEEEcCCC
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----SDEVLVLDRVQREDAGMYQCHVSADDD   83 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~   83 (371)
                      ..++.+.+.+.....+.+|++++|.|.+..+.|.+.+.|+|++......    ...+|.|.+++.+|+|.|+|.+.|..|
T Consensus         7 ~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   86 (98)
T 1gl4_B            7 SKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFA   86 (98)
T ss_dssp             --CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             CCCcEEEEeCCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCceeecCCCEEEEeCCChhhCEEEEEEecCCCC
Confidence            4466777777665799999999999976656788999999964322211    456899999999999999999999988


Q ss_pred             CeEEEEEEEEe
Q psy14542         84 SAQMSAQVILG   94 (371)
Q Consensus        84 ~~~~~~~l~v~   94 (371)
                      .....+.|.|.
T Consensus        87 ~~~~~~~l~V~   97 (98)
T 1gl4_B           87 MDQGTATLHVQ   97 (98)
T ss_dssp             EEEEEEEEEEC
T ss_pred             ccccEEEEEEe
Confidence            88888888775

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.44  E-value=1.8e-13  Score=93.55  Aligned_cols=82  Identities=22%  Similarity=0.462  Sum_probs=67.7

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCCC
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHVSADDD   83 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~   83 (371)
                      .++.+...|.. ..+.+|+.+.|.|.+. +.| +.+.|+|++..+...     ....|.|.+++.+|+|.|+|.+.|..|
T Consensus         8 ~pp~~~~~~~~-~~v~~G~~v~l~C~~~-g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g   84 (95)
T 2ckn_A            8 QPWGVPVEVES-LLVHPGDLLQLRCRLR-DDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSG   84 (95)
T ss_dssp             CSCCBTTBBCC-EEECTTSCEEEECCEE-SSC-CEEEEEBTTBCCCCCSSEEECSSEEEESSCCGGGSEEEEEEEEETTE
T ss_pred             CCCEEEcCcce-EEEcCCCeEEEEEECC-CCC-CceEEEECCEecCCCCCEEEeCCEEEECCCChHHCEEEEEEeccCCC
Confidence            45667677777 8999999999999654 456 699999998876543     456899999999999999999999888


Q ss_pred             CeEEEEEEEE
Q psy14542         84 SAQMSAQVIL   93 (371)
Q Consensus        84 ~~~~~~~l~v   93 (371)
                      .....+.|.|
T Consensus        85 ~~~~~~~l~V   94 (95)
T 2ckn_A           85 SDTTYFSVNV   94 (95)
T ss_dssp             EEEEEEEEEE
T ss_pred             cEEEEEEEEE
Confidence            8777777776

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=3.3e-13  Score=95.85  Aligned_cols=95  Identities=12%  Similarity=0.187  Sum_probs=76.3

Q ss_pred             eeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe-----cceEEEeccCCC
Q psy14542        210 RLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GSSLSISHVEES  284 (371)
Q Consensus       210 ~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~  284 (371)
                      .|.|..    .++.+...+.... +.+|+.+.|.|.+.+.|.|.+.|++++..+..+.++...     ...|.|.++..+
T Consensus         6 ~l~V~~----~p~~~~~~~~~~~-v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~   80 (115)
T 2cr6_A            6 SGLVQG----RRVHIIEDLEDVD-VQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALK   80 (115)
T ss_dssp             CCCCCS----SCCEEEECCCEEE-EETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTT
T ss_pred             EEEEcC----CCCeEeccCccEE-EeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChh
Confidence            566662    2335555566666 999999999999999999999999999988877665432     237999999999


Q ss_pred             CCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542        285 DSGVWNCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       285 d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      |+|.|+|.+    |.....+.|.|..+|.
T Consensus        81 D~G~Y~C~~----g~~~~~~~L~V~~~p~  105 (115)
T 2cr6_A           81 DSGTIYFEA----GDQRASAALRVTEKPS  105 (115)
T ss_dssp             TCEEEEEEE----TTEECCEEEEEECCSS
T ss_pred             hCEEEEEEE----CCeeEEEEEEEECCCc
Confidence            999999994    6777778999998887

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.44  E-value=1.7e-11  Score=93.28  Aligned_cols=127  Identities=13%  Similarity=0.275  Sum_probs=91.8

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe--CCEEEeeC-CeeEEEEccCCcCCCeEEEEEEEcCCCCeE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK--DGLVLRRN-SDEVLVLDRVQREDAGMYQCHVSADDDSAQ   86 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~--~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   86 (371)
                      .+.+.+.|+. ..|..|+++.|.|...-.. ...+.|--  ++..+..+ ....|.|.+++  |+|.|.|.+.....+..
T Consensus         2 ~f~v~v~P~~-~~V~~G~S~~l~Cs~~c~~-p~~~glet~l~~~~~~~g~~w~~l~l~~vs--~~g~~~C~~~c~~~~~~   77 (192)
T 1zxq_A            2 VFEVHVRPKK-LAVEPKGSLEVNCSTTCNQ-PEVGGLETSLNKILLDEQAQWKHYLVSNIS--HDTVLQCHFTCSGKQES   77 (192)
T ss_dssp             CCCEEEESSE-EEECTTEEEEEEEEESCSS-CSEEEEECSSEEEEEEEETTEEEEEEEEEC--SCEEEEEEEEETTEEEE
T ss_pred             CcEEEEeCCC-cEEeCCCcEEEEEECCCCC-ccccccccccCceEEcCCCCeEEEEEeccc--cCCeeEEEEECCCcceE
Confidence            4678889997 8899999999999764222 22355643  22223322 44679999998  78999999998766777


Q ss_pred             EEEEEEEecceeeEecCC-ceeeecCCcEEEEEEecCCCCC--ceEEEeeCCEEeee
Q psy14542         87 MSAQVILGGELVEIASSN-QVVVDVGHRIELHCRVSPKRLS--SAKAWLKDGLVLRR  140 (371)
Q Consensus        87 ~~~~l~v~~~~~~~~~~~-~~~~~~g~~v~l~C~~~~~~~~--~~v~W~~~~~~~~~  140 (371)
                      +.+.|+|+..|..+...+ ...+.+|+.++|.|.+.+..+.  ..+.|++++..+..
T Consensus        78 ~~~~itVy~~P~~v~i~~~p~~~~~G~~~tL~C~v~~v~P~~~L~v~llrG~~~l~~  134 (192)
T 1zxq_A           78 MNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHY  134 (192)
T ss_dssp             EEEEEEECBCCCCCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEE
T ss_pred             EEEEEEEEeCCCCceEccCCccccCCCcEEEEEEeCCeECCCCcEEEEEcCCEEeee
Confidence            899999995444444443 2456899999999999875432  35899999988754

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.44  E-value=1.5e-12  Score=89.88  Aligned_cols=89  Identities=21%  Similarity=0.246  Sum_probs=71.9

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe--c--ceEEEeccCCCCCeEEEEEEEc
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--G--SSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      .+|.+...+.....+..|+.+.|.|.+. .|.+.+.|++++..+..+.++...  +  ..|.|.++..+|+|.|+|.|  
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a--   82 (100)
T 2yuv_A            6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA--   82 (100)
T ss_dssp             SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE--
T ss_pred             CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE--
Confidence            3556665555422288999999999998 788999999999998877776532  2  26999999999999999999  


Q ss_pred             CCCCceeEEEEEEecCcc
Q psy14542        296 SEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       296 ~~g~~~~~~~l~v~~~p~  313 (371)
                        |....++.|.|.++|.
T Consensus        83 --g~~~~~~~l~V~~~P~   98 (100)
T 2yuv_A           83 --GDEKCSTELFVRSGPS   98 (100)
T ss_dssp             --TTEEEEEEEEECCSCC
T ss_pred             --CCceEEEEEEEecCCC
Confidence              7788889999988775

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.43  E-value=5.4e-13  Score=100.13  Aligned_cols=92  Identities=15%  Similarity=0.259  Sum_probs=74.9

Q ss_pred             ecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEEE
Q psy14542          7 VKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQC   76 (371)
Q Consensus         7 v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C   76 (371)
                      +..+|.+...|.. ..+.+|+.++|.|.+ .+.|.+.+.|+|++..+...          ....|.|.+++.+|+|.|+|
T Consensus        38 v~~~P~~~~~~~~-~~v~~G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  115 (154)
T 1fhg_A           38 PHVKPYFTKTILD-MEVVEGSAARFDCKV-EGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC  115 (154)
T ss_dssp             CCEEEEEEECCCC-EEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEE
T ss_pred             CCCCCeEEccCCc-EEEeCCCeEEEEEEE-EEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEE
Confidence            3457788888887 999999999999954 56788899999999877654          24589999999999999999


Q ss_pred             EEEcCCCCeEEEEEEEEecceeeEe
Q psy14542         77 HVSADDDSAQMSAQVILGGELVEIA  101 (371)
Q Consensus        77 ~~~~~~~~~~~~~~l~v~~~~~~~~  101 (371)
                      .+.|..|.....+.|.|. .++.+.
T Consensus       116 ~a~N~~G~~~~~~~l~V~-~~p~~~  139 (154)
T 1fhg_A          116 KAVNSLGEATCTAELLVE-TMGKEG  139 (154)
T ss_dssp             EEEETTEEEEEEEEEEEE-CC----
T ss_pred             EEEECCCeEEEEEEEEEe-CcCcCC
Confidence            999999988888899988 444443

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=1.6e-13  Score=97.98  Aligned_cols=85  Identities=24%  Similarity=0.364  Sum_probs=71.9

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAGMYQCHVSAD   81 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~~   81 (371)
                      .+|.+...|.. ..+.+|+.++|.|. ..+.|.+.+.|+|++..+...       .+++|.|.+++.+|+|.|+|.+.|.
T Consensus         7 ~pP~i~~~p~~-~~v~~G~~v~l~C~-~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   84 (118)
T 2eo9_A            7 GPPVIRQGPVN-QTVAVDGTFVLSCV-ATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTP   84 (118)
T ss_dssp             CSCCCSBCCCC-EEEETTCEEEEECB-CCCSSCCEEEEEESSSBCCTTSTTEEEEETTEEEEESCCGGGCCCEEEEEECS
T ss_pred             CCCEEEcCCCC-EEEcCCCeEEEEEE-EEecCCCEEEEEECCEECcCCCCeEEEccCCEEEEccCCcCCCEEEEEEEEcC
Confidence            46777777877 89999999999995 467788999999998776532       4558999999999999999999999


Q ss_pred             CCCeEEEEEEEEec
Q psy14542         82 DDSAQMSAQVILGG   95 (371)
Q Consensus        82 ~~~~~~~~~l~v~~   95 (371)
                      .|.....+.|.|.+
T Consensus        85 ~g~~~~~~~l~V~~   98 (118)
T 2eo9_A           85 SGEATWSAYIEVQE   98 (118)
T ss_dssp             SCEEEEECCEEEEC
T ss_pred             CCcEEEEEEEEEEe
Confidence            99888888888873

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.43  E-value=1.9e-12  Score=88.88  Aligned_cols=80  Identities=18%  Similarity=0.310  Sum_probs=66.3

Q ss_pred             EEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542         14 EMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDS   84 (371)
Q Consensus        14 ~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   84 (371)
                      ...|.. ..+.+|+++.|.|.+....|.+.+.|++++..+...         ....|.|.+++.+|+|.|+|.+.|..|.
T Consensus         5 ~~~~~~-~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   83 (97)
T 2bk8_A            5 SGQIMH-AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGE   83 (97)
T ss_dssp             ECCCCC-EEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             eccCcC-EEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCe
Confidence            334445 899999999999965543478899999999877544         3348999999999999999999999998


Q ss_pred             eEEEEEEEEe
Q psy14542         85 AQMSAQVILG   94 (371)
Q Consensus        85 ~~~~~~l~v~   94 (371)
                      ....+.|.|.
T Consensus        84 ~~~~~~l~V~   93 (97)
T 2bk8_A           84 DSSYAELFVK   93 (97)
T ss_dssp             EEEEEEEEET
T ss_pred             EeEEEEEEEE
Confidence            8888888886

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.43  E-value=6.7e-13  Score=93.06  Aligned_cols=84  Identities=23%  Similarity=0.226  Sum_probs=67.5

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCC---CeeEEEeCCEEEeeC------------------CeeEEEEccCC
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLS---SAKAWLKDGLVLRRN------------------SDEVLVLDRVQ   67 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~---~~~~W~~~~~~~~~~------------------~~~~l~i~~~~   67 (371)
                      +.|.+...|.. +.+.+|++++|.|.+. +.|.   +.+.|+|++......                  ...+|.|.+++
T Consensus         3 p~p~f~~~p~~-~~v~~G~~v~L~C~~~-g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~   80 (108)
T 3cx2_A            3 PIGLFVMRPQD-GEVTVGGSITFSARVA-GASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQ   80 (108)
T ss_dssp             CCCSCSBCCCC-EEEETTCCEEEEEEEE-CC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCC
T ss_pred             CccEEEeCCCc-EEEeCCCCEEEEEEEC-CCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCC
Confidence            45667777877 8999999999999654 5666   899999976221100                  25689999999


Q ss_pred             cCCCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542         68 REDAGMYQCHVSADDDSAQMSAQVILG   94 (371)
Q Consensus        68 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~   94 (371)
                      .+|+|.|+|.+.|..|.....+.|.|.
T Consensus        81 ~~D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           81 PAFTGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CccCEEEEEEEecCCCceEEEEEEEEe
Confidence            999999999999999999999998885

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.43  E-value=1.8e-12  Score=87.76  Aligned_cols=79  Identities=19%  Similarity=0.266  Sum_probs=63.5

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVS   79 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~   79 (371)
                      .++.+...+.. ..+.+|+.++|.|.+. + +.+.+.|+|||..+...         ...+|.|.+++.+|+|.|+|.+.
T Consensus         4 ~~~~~~~~~~~-~~v~~G~~v~l~C~v~-~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~   80 (93)
T 1waa_A            4 ALIEVEKPLYG-VEVFVGETAHFEIELS-E-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAA   80 (93)
T ss_dssp             CCCCEEECCCC-EEEETTSCEEEEEEES-S-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEET
T ss_pred             CCcEeeccCcc-eEEeCCCCEEEEEEEC-C-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEEC
Confidence            46777777777 9999999999999765 3 34779999999988654         34589999999999999999997


Q ss_pred             cCCCCeEEEEEEEEe
Q psy14542         80 ADDDSAQMSAQVILG   94 (371)
Q Consensus        80 ~~~~~~~~~~~l~v~   94 (371)
                      |.    ..+..|.|.
T Consensus        81 n~----~~sa~L~V~   91 (93)
T 1waa_A           81 NT----KSAANLKVK   91 (93)
T ss_dssp             TE----EEEEEEEEE
T ss_pred             CC----cEEEEEEEE
Confidence            63    456667665

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=7.6e-13  Score=94.47  Aligned_cols=85  Identities=18%  Similarity=0.304  Sum_probs=69.6

Q ss_pred             ccceEEEe--CCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEE
Q psy14542          9 SSLSIEMS--PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHV   78 (371)
Q Consensus         9 ~~~~~~~~--p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~   78 (371)
                      .+|.+.+.  +.....+.+|+.+.|.|. ..+.|.+.+.|+|++..+...        ....|.|.+++.+|+|.|+|.+
T Consensus        20 ~~P~i~~~~~~~~~~~v~~G~~~~l~C~-~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   98 (118)
T 2e7c_A           20 EPPKIRLPRHLRQTYIRKVGEQLNLVVP-FQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSV   98 (118)
T ss_dssp             EEEEECCCTTTSSCEEEESSSCEEEEEE-EEEESCCEEEEEETTEECCCSSCEEEECSSEEEEEESSCCTTTCEEEEEEE
T ss_pred             cCCeEecCcccCCCEEEECCCEEEEEEE-EccCCCCEEEEEECCEECCCCcEEEEECCCeEEEEECCCChhcCEEEEEEE
Confidence            35666543  233488999999999995 457788999999999887632        3566999999999999999999


Q ss_pred             EcCCCCeEEEEEEEEe
Q psy14542         79 SADDDSAQMSAQVILG   94 (371)
Q Consensus        79 ~~~~~~~~~~~~l~v~   94 (371)
                      .|..|.....+.|.|.
T Consensus        99 ~N~~G~~~~~~~l~V~  114 (118)
T 2e7c_A           99 QIENMKDTATIRIRVV  114 (118)
T ss_dssp             ECSSCEECCEEEEEEE
T ss_pred             EeCCCeEEEEEEEEEE
Confidence            9999988888888887

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.42  E-value=1e-12  Score=86.95  Aligned_cols=68  Identities=25%  Similarity=0.361  Sum_probs=56.6

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV   91 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   91 (371)
                      +.+.+|+++.|.|.+ .+ |.+.+.|+|||..+...         ...+|.|.+++.+|+|.|+|.|.+    ....+.|
T Consensus         6 v~~~~G~~v~l~C~v-s~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~a~l   79 (84)
T 2lu7_A            6 VRSTPGGDLELVVHL-SG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ----DSRIFLV   79 (84)
T ss_dssp             EEECTTSCEEEECCC-SC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT----TCEEEEE
T ss_pred             EEEecCCCEEEEEEE-CC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECC----EEEEEEE
Confidence            789999999999965 44 77889999999988765         446899999999999999999843    4566777


Q ss_pred             EEe
Q psy14542         92 ILG   94 (371)
Q Consensus        92 ~v~   94 (371)
                      .|.
T Consensus        80 ~V~   82 (84)
T 2lu7_A           80 SVE   82 (84)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            776

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=3.9e-13  Score=94.68  Aligned_cols=85  Identities=16%  Similarity=0.258  Sum_probs=71.4

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEE
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQC   76 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C   76 (371)
                      ..+|.+...|.. ..+.+|+.+.|.|.+ .+.|.+.+.|+|++..+...           ....|.|.+++.+|+|.|+|
T Consensus         6 ~~~P~~~~~~~~-~~v~~G~~v~l~C~~-~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C   83 (110)
T 2dm2_A            6 SGAPFFEMKLKH-YKIFEGMPVTFTCRV-AGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTI   83 (110)
T ss_dssp             SCCCCBSSCCCC-EEEETTCCEEEEEEB-CCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEE
T ss_pred             CCCCEEEecCcC-eEEeCCCeEEEEEEE-EecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEE
Confidence            346777777777 899999999999954 57788899999988776542           22379999999999999999


Q ss_pred             EEEcCCCCeEEEEEEEEe
Q psy14542         77 HVSADDDSAQMSAQVILG   94 (371)
Q Consensus        77 ~~~~~~~~~~~~~~l~v~   94 (371)
                      .+.|..|.....+.|.|.
T Consensus        84 ~a~N~~g~~~~~~~l~V~  101 (110)
T 2dm2_A           84 MAANPQGRISCTGRLMVQ  101 (110)
T ss_dssp             EEECTTCCEEECCCEEEE
T ss_pred             EEEECCCeEEEEEEEEEE
Confidence            999999998888888887

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.41  E-value=1.6e-13  Score=95.84  Aligned_cols=84  Identities=19%  Similarity=0.345  Sum_probs=71.4

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVS   79 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~   79 (371)
                      ..+.+...|.. ..+.+|+++.|.|.+ .+.|.+.+.|++++..+...         ...+|.|.+++.+|+|.|+|.+.
T Consensus        13 ~~~~i~~~p~~-~~v~~G~~v~L~C~~-~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   90 (106)
T 1nct_A           13 LAARILTKPRS-MTVYEGESARFSCDT-DGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVE   90 (106)
T ss_dssp             CCCEEEECCCC-EEESSSSCEECCEEE-ECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCB
T ss_pred             CCCEEEECCCC-EEEeCCCcEEEEEEE-EEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEE
Confidence            35778888888 999999999999955 56788899999988665433         35789999999999999999999


Q ss_pred             cCCCCeEEEEEEEEe
Q psy14542         80 ADDDSAQMSAQVILG   94 (371)
Q Consensus        80 ~~~~~~~~~~~l~v~   94 (371)
                      |..|.....+.|.|.
T Consensus        91 N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           91 NSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             CSSCBCCEEEEEEEC
T ss_pred             eCCCeEEEEEEEEEE
Confidence            999988888888875

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.41  E-value=9.8e-13  Score=88.51  Aligned_cols=70  Identities=29%  Similarity=0.532  Sum_probs=57.1

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE--ec--ceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR--IG--SSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~--~~--~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      +..|+.+.|.|.+.+ |.+.+.|++||..+..+.++..  .+  .+|.|.++..+|+|.|+|.|.|    ...++.|.|
T Consensus        18 ~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~~~ltV   91 (91)
T 2lvc_A           18 AITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGD----ECAYFTVTI   91 (91)
T ss_dssp             CCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSS----CEEEEEEEC
T ss_pred             EECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcc----eEEEEEEEC
Confidence            568999999999865 8889999999999988877663  22  3699999999999999999855    455555543

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=4.1e-13  Score=92.00  Aligned_cols=85  Identities=22%  Similarity=0.393  Sum_probs=67.6

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      .+|.+...+.... +..|+.+.|.|.+.+.|.+.+.|++++..+....     +..|.|.++..+|+|.|+|.|.|..+.
T Consensus         9 ~~~~i~~~p~~~~-v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~n~~~~   82 (96)
T 2ens_A            9 EEVQLVVEPEGGA-VAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP-----SPVLILPEIGPQDQGTYSCVATHSSHG   82 (96)
T ss_dssp             CSCCCEEESTTSE-ECTTCEEEEECCCSSCSSCCCCCEESSSBCSSCC-----CSEEEEESCCTTTCEEEECEECCSSCC
T ss_pred             CCCEEEECCCCCE-EcCCCeEEEEEEEccCCCCEEEEEECCEECcCCC-----CCEEEECCCCcccCEEEEEEEEeCCCC
Confidence            3455555555555 8999999999999999999999999998876543     568999999999999999999997655


Q ss_pred             c--eeEEEEEEec
Q psy14542        300 D--KMQLFIQYAH  310 (371)
Q Consensus       300 ~--~~~~~l~v~~  310 (371)
                      .  +..+.|.|.+
T Consensus        83 ~~~s~~~~v~V~~   95 (96)
T 2ens_A           83 PQESRAVSISIIE   95 (96)
T ss_dssp             CEECCCEEEEECC
T ss_pred             cEEEEEEEEEEeC
Confidence            3  4455565543

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=7e-13  Score=92.12  Aligned_cols=88  Identities=16%  Similarity=0.116  Sum_probs=71.0

Q ss_pred             ccceeeeeeeeeeeecCCeEEEEEEeecCCC-CceEEEeCCcccccCCceEEe--c--ceEEEeccCCCCCeEEEEEEEc
Q psy14542        221 SAAKMFEKHRILNVKKDESVILPCSAQGNPL-PTIKWYKQDSPVEESDRIQRI--G--SSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       221 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      ++.+...+.... +.+|+.+.|.|.+.+.|. +.+.|+++|..+..+.++...  +  .+|.|.++..+|+|.|+|.|. 
T Consensus         8 p~~~~~~~~~~~-v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~-   85 (104)
T 2eny_A            8 HVGITKRLKTME-VLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVR-   85 (104)
T ss_dssp             CCCCSBCCCCEE-EESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEET-
T ss_pred             CCEEEecCCCcE-EcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEEC-
Confidence            445555555666 999999999999998775 479999999999887776632  2  379999999999999999984 


Q ss_pred             CCCCceeEEEEEEecCcc
Q psy14542        296 SEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       296 ~~g~~~~~~~l~v~~~p~  313 (371)
                         ....++.|.|.++|.
T Consensus        86 ---~~~~~a~L~V~~~p~  100 (104)
T 2eny_A           86 ---GLTSKASLIVRERSG  100 (104)
T ss_dssp             ---TEEEEECEEEECCCS
T ss_pred             ---CeeEEEEEEEeCCCc
Confidence               456788899988776

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.41  E-value=8.7e-12  Score=95.82  Aligned_cols=154  Identities=10%  Similarity=0.040  Sum_probs=97.6

Q ss_pred             eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCC
Q psy14542        106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESD  185 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d  185 (371)
                      ..+.+|+++.|.|.+....+ ..+.|.-.-......                       .+.    ....+.|.+++ +|
T Consensus        12 ~~V~~G~Sv~l~Cs~~c~~p-~~~~~~t~l~~~~~~-----------------------~g~----~~~~~~ls~vs-~d   62 (196)
T 3bn3_B           12 AFVERGGSLWLNCSTNCPRP-ERGGLETSLRRNGTQ-----------------------RGL----RWLARQLVDIR-EP   62 (196)
T ss_dssp             EEEETTEEEEEEEEECCSSC-SEEEEECSSEEEEEE-----------------------EET----TEEEEEEEEEC-SS
T ss_pred             cEEcCCCeEEEEEeCCCCCC-CccEEEEccCCeeEc-----------------------ccc----CceEEEEEEEc-cC
Confidence            34589999999999965333 467775321110000                       000    01347899998 77


Q ss_pred             ccceeEEEeeccccceeeeeeccceeeeecchhcccccee-eeeeeeeeeecCCeEEEEEEeec-CCCCc--eEEEeCCc
Q psy14542        186 RYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKM-FEKHRILNVKKDESVILPCSAQG-NPLPT--IKWYKQDS  261 (371)
Q Consensus       186 ~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~-~~~~~~~~~~~g~~~~l~C~~~~-~p~~~--v~W~~~~~  261 (371)
                       .+.|.|.+... .......+   .|.|.     .+|... +.+.... +.+|+.++|+|.+.+ .|..+  |+|++++.
T Consensus        63 -~~~~~C~~~c~-~~~~~~~v---~l~Vy-----~~P~~v~i~~~~~~-~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~  131 (196)
T 3bn3_B           63 -ETQPVCFFRCA-RRTLQARG---LIRTF-----QRPDRVELMPLPPW-QPVGENFTLSCRVPGAGPRASLTLTLLRGAQ  131 (196)
T ss_dssp             -EECCEEEEEET-TEEEEEEC---EEEEE-----BCCCCCEECCCCSS-EETTSEEEEEEEETTCBCGGGEEEEEEETTE
T ss_pred             -CCceEEEEECC-CCceEEEE---EEEEe-----cCCCcCEEccCCcc-ccCCCcEEEEEEeCCccCCCCcEEEEEeCCE
Confidence             78899998765 44444444   77777     333332 2222223 889999999999987 45544  79999998


Q ss_pred             ccccCCce------EEecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        262 PVEESDRI------QRIGSSLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       262 ~~~~~~~~------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      .+......      ......+.+.....+|...|+|+|.|..+.
T Consensus       132 ~l~~~~~~~~~~~~~~~t~~~~~~~~r~D~g~~~sC~A~l~l~~  175 (196)
T 3bn3_B          132 ELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRP  175 (196)
T ss_dssp             EEEEEECTTSCTTCCCEEEEEEEECCGGGTTCEEEEEEEEECGG
T ss_pred             EeeccccccccccccceeEEEEEeeeeccCCCeEEEEEEccCCc
Confidence            76432200      001145677766676777999999998774

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=7.9e-13  Score=92.07  Aligned_cols=87  Identities=21%  Similarity=0.401  Sum_probs=68.7

Q ss_pred             ccceeeeeee---eeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe--c--ceEEEeccCCCCCeEEEEEE
Q psy14542        221 SAAKMFEKHR---ILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--G--SSLSISHVEESDSGVWNCVA  293 (371)
Q Consensus       221 ~p~~~~~~~~---~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~d~G~Y~C~a  293 (371)
                      +|.+...+..   .. +..|+.+.|.|.+.+.|.+ +.|++++..+....++...  +  ..|.|.++..+|+|.|+|.|
T Consensus         7 ~P~~~~~p~~~~~~~-v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   84 (104)
T 2e6p_A            7 GPVHILSPQDKVSLT-FTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRT   84 (104)
T ss_dssp             SSCCCCBCCSCEEEE-EESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEEC
T ss_pred             CCCEEECCCCCccEE-EeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEE
Confidence            4444444444   44 8999999999999999988 9999999988877666532  2  36999999999999999999


Q ss_pred             EcCCCCceeEEEEEEecCcc
Q psy14542        294 NNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       294 ~n~~g~~~~~~~l~v~~~p~  313 (371)
                      .|..+    .+.|.|.++|.
T Consensus        85 ~n~~~----~~~l~V~~~P~  100 (104)
T 2e6p_A           85 EGVSA----FFGVTVQDPSG  100 (104)
T ss_dssp             SSCCC----CEEEEEECCCC
T ss_pred             CCceE----EEEEEEcCCCC
Confidence            98743    56777777665

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=3.3e-13  Score=94.65  Aligned_cols=84  Identities=19%  Similarity=0.273  Sum_probs=67.4

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCC--CCCCeeEEEeCCE-----------EEeeC-------CeeEEEEccCCcC
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPK--RLSSAKAWLKDGL-----------VLRRN-------SDEVLVLDRVQRE   69 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~--~~~~~~~W~~~~~-----------~~~~~-------~~~~l~i~~~~~~   69 (371)
                      .+.+...|.. +.+.+|++++|.|.+...  .|.+.|.|||+..           .+...       ...+|.|.+++.+
T Consensus        12 ~~~f~~~P~~-v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   90 (118)
T 2edn_A           12 TGVFLKKPDS-VSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLG   90 (118)
T ss_dssp             SSSCSBCCCC-CEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTT
T ss_pred             cceEEECCCC-eEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChh
Confidence            3445666766 899999999999977543  4789999999741           11110       2588999999999


Q ss_pred             CCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542         70 DAGMYQCHVSADDDSAQMSAQVILG   94 (371)
Q Consensus        70 d~G~Y~C~~~~~~~~~~~~~~l~v~   94 (371)
                      |+|.|+|.+.+..+..+..+.|.|.
T Consensus        91 D~G~Y~Cevsn~~g~~s~~~~L~V~  115 (118)
T 2edn_A           91 DRGYYRLEVKAKDTCDSCGFNIDVE  115 (118)
T ss_dssp             TCSCEEEEEECSSCEEEEEECCEEE
T ss_pred             hCEEEEEEEEEcCCcEEEEEEEEEE
Confidence            9999999999999998999999987

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=2.8e-13  Score=92.86  Aligned_cols=84  Identities=24%  Similarity=0.499  Sum_probs=69.1

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCe--E
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSA--Q   86 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~--~   86 (371)
                      .++.+...|.. ..+.+|+.++|.|. ..+.|.+.+.|+|++..+.......|.|.+++.+|+|.|+|.+.|..+..  .
T Consensus         9 ~~~~i~~~p~~-~~v~~G~~v~l~C~-~~g~p~~~v~W~k~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s   86 (96)
T 2ens_A            9 EEVQLVVEPEG-GAVAPGGTVTLTCE-VPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQES   86 (96)
T ss_dssp             CSCCCEEESTT-SEECTTCEEEEECC-CSSCSSCCCCCEESSSBCSSCCCSEEEEESCCTTTCEEEECEECCSSCCCEEC
T ss_pred             CCCEEEECCCC-CEEcCCCeEEEEEE-EccCCCCEEEEEECCEECcCCCCCEEEECCCCcccCEEEEEEEEeCCCCcEEE
Confidence            46788888887 78999999999995 45677889999999988876677899999999999999999999965543  3


Q ss_pred             EEEEEEEe
Q psy14542         87 MSAQVILG   94 (371)
Q Consensus        87 ~~~~l~v~   94 (371)
                      ..+.|.|.
T Consensus        87 ~~~~v~V~   94 (96)
T 2ens_A           87 RAVSISII   94 (96)
T ss_dssp             CCEEEEEC
T ss_pred             EEEEEEEe
Confidence            44556554

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.39  E-value=7.5e-13  Score=95.15  Aligned_cols=92  Identities=23%  Similarity=0.334  Sum_probs=69.8

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecC-CCCCCeeEEEeCCEEEee-----------------CCeeEEEEccCCcCCCeE
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSP-KRLSSAKAWLKDGLVLRR-----------------NSDEVLVLDRVQREDAGM   73 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~-~~~~~~~~W~~~~~~~~~-----------------~~~~~l~i~~~~~~d~G~   73 (371)
                      .+.+.|...+.+.+|++++|.|.+.. ..+.+.+.|++++..+..                 ....+|.|.+++.+|+|.
T Consensus         9 ~v~i~p~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~   88 (122)
T 3s35_X            9 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGL   88 (122)
T ss_dssp             EEEEESCSCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEE
T ss_pred             EEEEcCCCCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEE
Confidence            46777777568999999999996543 245578999998763211                 034579999999999999


Q ss_pred             EEEEEEcCCCCeEEEEEEEEecceeeEecCC
Q psy14542         74 YQCHVSADDDSAQMSAQVILGGELVEIASSN  104 (371)
Q Consensus        74 Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~  104 (371)
                      |+|.+.|..|.....+.|.|. .+|.+...+
T Consensus        89 Y~C~a~n~~g~~~~~~~l~V~-~~p~i~~~p  118 (122)
T 3s35_X           89 YTCAASSGLMTKKNSTFVRVH-EKPFVAFGS  118 (122)
T ss_dssp             EEEEEECSSCEEEEEEEEEEE-EEECC----
T ss_pred             EEEEEccCCCceEEEEEEEEe-ccCeEEeec
Confidence            999999999988899999998 666655443

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=4e-13  Score=93.01  Aligned_cols=87  Identities=15%  Similarity=0.184  Sum_probs=67.5

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCC----ceEE--ec--ceEEEeccCCCCCeEEEE
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD----RIQR--IG--SSLSISHVEESDSGVWNC  291 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~----~~~~--~~--~~l~i~~~~~~d~G~Y~C  291 (371)
                      .+|.+...+.... +..|+.+.|.|.+.+.| +.+.|++++..+....    ++..  .+  ..|.|.++..+|+|.|+|
T Consensus         7 ~p~~~~~~~~~~~-v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C   84 (101)
T 2edk_A            7 GPVLIVTPLEDQQ-VFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQV   84 (101)
T ss_dssp             CCCCEEECCCCEE-EESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEE
T ss_pred             CCCEEEecCCceE-EcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEE
Confidence            3455665555666 99999999999999888 9999999999887765    3342  22  369999999999999999


Q ss_pred             EEEcCCCCceeEEEEEEecCc
Q psy14542        292 VANNSEGQDKMQLFIQYAHGK  312 (371)
Q Consensus       292 ~a~n~~g~~~~~~~l~v~~~p  312 (371)
                      .|.|    ...++.|.|.++|
T Consensus        85 ~a~n----~~~~~~l~V~~~P  101 (101)
T 2edk_A           85 ITNG----GQCEAELIVEEKQ  101 (101)
T ss_dssp             ECSS----CEECCBEEEECCC
T ss_pred             EEcC----CcEEEEEEEeCCC
Confidence            9987    3445567776654

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.39  E-value=3.2e-12  Score=87.28  Aligned_cols=82  Identities=16%  Similarity=0.328  Sum_probs=66.0

Q ss_pred             cceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe--c--ceEEEeccCCCCCeEEEEEEEcCC
Q psy14542        222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--G--SSLSISHVEESDSGVWNCVANNSE  297 (371)
Q Consensus       222 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~d~G~Y~C~a~n~~  297 (371)
                      +.+...+.... +..|+.+.|.|.+ +.|.+.+.|++++..+..+.++...  +  ..|.|.++..+|+|.|+|.|    
T Consensus         9 ~~~~~~~~~~~-v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----   82 (95)
T 2k1m_A            9 SAFSKKPRSVE-VAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----   82 (95)
T ss_dssp             CCCSBCCCCEE-EETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE----
T ss_pred             CeeEeCCCcEE-EeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE----
Confidence            44444455555 9999999999999 7888999999999988877666532  2  36999999999999999999    


Q ss_pred             CCceeEEEEEEe
Q psy14542        298 GQDKMQLFIQYA  309 (371)
Q Consensus       298 g~~~~~~~l~v~  309 (371)
                      |....++.|.|.
T Consensus        83 g~~~~~~~l~V~   94 (95)
T 2k1m_A           83 GSSKVKFDLKVI   94 (95)
T ss_dssp             TTEEEEEEEEEE
T ss_pred             CCceEEEEEEEe
Confidence            666777777775

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.39  E-value=1.5e-12  Score=90.44  Aligned_cols=88  Identities=15%  Similarity=0.226  Sum_probs=71.7

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe-cc---eEEEeccCCCCCeEEEEEEEc
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-GS---SLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~-~~---~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      .+|.+...+.... +..|+.+.|.|.+.+.|.+ +.|++++..+..+.++... ++   .|.|.++..+|+|.|+|.   
T Consensus         7 ~pp~~~~~~~~~~-v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~---   81 (103)
T 2e7b_A            7 GPVRFQEALKDLE-VLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS---   81 (103)
T ss_dssp             CCCCCTBCCCCEE-EESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEE---
T ss_pred             CCCEEEecCccEE-EECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEE---
Confidence            4556655556666 9999999999999999888 9999999998877766632 23   599999999999999998   


Q ss_pred             CCCCceeEEEEEEecCcc
Q psy14542        296 SEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       296 ~~g~~~~~~~l~v~~~p~  313 (371)
                       .|.....+.|.|..+|.
T Consensus        82 -~g~~~~~~~l~V~~~p~   98 (103)
T 2e7b_A           82 -FGDQTTSATLTVTALPS   98 (103)
T ss_dssp             -CSSCBCCBCEEEECCCC
T ss_pred             -ECCcEEEEEEEEEeccc
Confidence             56677778888888776

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.39  E-value=9e-13  Score=92.10  Aligned_cols=86  Identities=22%  Similarity=0.361  Sum_probs=68.3

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe--c--ceEEEeccCCCCCeEEEEEEEc
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--G--SSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      .+|.+...+.... +..|+.+.|.|.+.+.|.+ +.|++++..+....++...  +  ..|.|.++..+|+|.|+|.|.|
T Consensus         7 ~~p~~~~~~~~~~-v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   84 (106)
T 2dlt_A            7 GQLEVLQDIADLT-VKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDG   84 (106)
T ss_dssp             CCCCEEECCCCEE-EESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEET
T ss_pred             CCCEEecCCCCeE-EeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEcc
Confidence            4566666666666 9999999999999988877 9999999998877776632  2  3799999999999999999999


Q ss_pred             CCCCceeEEEEEEe
Q psy14542        296 SEGQDKMQLFIQYA  309 (371)
Q Consensus       296 ~~g~~~~~~~l~v~  309 (371)
                      .  .....+.|.|.
T Consensus        85 ~--~~~~~~~l~V~   96 (106)
T 2dlt_A           85 Y--ALSLSAKLNFL   96 (106)
T ss_dssp             S--CCCCCBCEEEE
T ss_pred             C--CceEEEEEEEE
Confidence            8  33344445554

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.38  E-value=7.4e-13  Score=91.51  Aligned_cols=83  Identities=17%  Similarity=0.310  Sum_probs=66.3

Q ss_pred             cceEEEeC---CCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEEE
Q psy14542         10 SLSIEMSP---SGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQC   76 (371)
Q Consensus        10 ~~~~~~~p---~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C   76 (371)
                      +|.+...|   ...+.+.+|+++.|.|.+ .+.|.+.+.|++++..+...          ...+|.|.+++.+|+|.|+|
T Consensus         4 ~P~~~~~~~~~~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C   82 (100)
T 3caf_A            4 APYWTNTEKMEKRLHAVPAANTVKFRCPA-GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC   82 (100)
T ss_dssp             EEEESCTTTTSCCEEEECTTCCEEEECCE-EEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred             CCEeEcCccccccEEEecCCCEEEEEEEc-cccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEE
Confidence            34454444   223778999999999954 56788899999999887653          23489999999999999999


Q ss_pred             EEEcCCCCeEEEEEEEE
Q psy14542         77 HVSADDDSAQMSAQVIL   93 (371)
Q Consensus        77 ~~~~~~~~~~~~~~l~v   93 (371)
                      .+.|..|.....+.|.|
T Consensus        83 ~a~N~~g~~~~~~~l~V   99 (100)
T 3caf_A           83 VVENEYGSINHTYHLDV   99 (100)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEeCCCEEEEEEEEEE
Confidence            99999888887777776

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=4.6e-12  Score=87.97  Aligned_cols=88  Identities=20%  Similarity=0.315  Sum_probs=72.5

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe-cc---eEEEeccCCCCCeEEEEEEEc
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-GS---SLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~-~~---~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      .+|.+...+.... +..|+.+.|.|.+ +.|.+.+.|++++..+..+.++... ++   .|.|.++..+|+|.|+|.   
T Consensus         7 ~pp~~~~~~~~~~-v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~---   81 (103)
T 2dku_A            7 GANCFTEELTNLQ-VEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD---   81 (103)
T ss_dssp             CCCCCSSCCCCEE-EETTSEEEEEEEC-SSCCSCCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE---
T ss_pred             CCCEeEecCCcEE-EeCCCcEEEEEEe-CCCCCeEEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE---
Confidence            3556666666666 9999999999994 7888999999999999887777643 33   799999999999999998   


Q ss_pred             CCCCceeEEEEEEecCcc
Q psy14542        296 SEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       296 ~~g~~~~~~~l~v~~~p~  313 (371)
                       .|.....+.|.|..+|.
T Consensus        82 -~g~~~~~~~l~V~~~p~   98 (103)
T 2dku_A           82 -IGQAQSRAQLLVQGRRS   98 (103)
T ss_dssp             -CSSCBCCEEEEEECSCC
T ss_pred             -eCCceEEEEEEEeCccC
Confidence             67777788898887766

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=2.6e-13  Score=95.68  Aligned_cols=84  Identities=20%  Similarity=0.434  Sum_probs=71.1

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEEEEE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQCHV   78 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~   78 (371)
                      .+|.+...|.. ..+.+|+.++|.|.+ .+.|.+.+.|++++..+...          ...+|.|.+++.+|+|.|+|.+
T Consensus         8 ~~P~i~~~~~~-~~v~~G~~v~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   85 (110)
T 2dm3_A            8 FRPHFLQAPGD-LTVQEGKLCRMDCKV-SGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIA   85 (110)
T ss_dssp             CCCEEEECCCE-EEEESSSCBCCEEEE-ECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEE
T ss_pred             CCCcEEeCCCc-EEEeCCCEEEEEEEE-EEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEE
Confidence            36778887877 899999999999965 46788899999988766543          2358999999999999999999


Q ss_pred             EcCCCCeEEEEEEEEe
Q psy14542         79 SADDDSAQMSAQVILG   94 (371)
Q Consensus        79 ~~~~~~~~~~~~l~v~   94 (371)
                      .|..|.....+.|.|.
T Consensus        86 ~n~~g~~~~~~~l~V~  101 (110)
T 2dm3_A           86 TNRAGQNSFSLELVVA  101 (110)
T ss_dssp             ECSSCEEEECCEEEEE
T ss_pred             ECCCCEEEEEEEEEEe
Confidence            9999888888888887

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.38  E-value=2.1e-12  Score=91.25  Aligned_cols=88  Identities=20%  Similarity=0.325  Sum_probs=68.8

Q ss_pred             EEecccceEEEeCCCcEEEeccCcEEEEEEecCC-CCCCeeEEEeCCEEEeeC----------C-------eeEEEEccC
Q psy14542          5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRN----------S-------DEVLVLDRV   66 (371)
Q Consensus         5 ~~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~~~~~~~~----------~-------~~~l~i~~~   66 (371)
                      ....++|.+...|.. ..+.+|++++|.|.+... .+.+.+.|+|++..+...          .       ..+|.|.++
T Consensus         5 c~~~~~P~i~~~p~~-~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v   83 (112)
T 3so5_A            5 CDDFPXPQITVQPET-QSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNV   83 (112)
T ss_dssp             ---CCSCEEEECCCC-EEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSC
T ss_pred             cCCCCCCeEEeCCCC-cEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEecc
Confidence            344678889998888 899999999999976533 456789999999876542          1       478999999


Q ss_pred             CcCCCeEEEEEEEcCCCC-eEEEEEEEE
Q psy14542         67 QREDAGMYQCHVSADDDS-AQMSAQVIL   93 (371)
Q Consensus        67 ~~~d~G~Y~C~~~~~~~~-~~~~~~l~v   93 (371)
                      +.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus        84 ~~~D~G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           84 EFTSEGXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             CGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ccccCCeEEEEEEeCCCcEEEeEEEEEe
Confidence            999999999999998776 345566655

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=1.1e-11  Score=86.39  Aligned_cols=88  Identities=11%  Similarity=0.112  Sum_probs=71.6

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCC----------ceEEec----ceEEEeccCCCC
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD----------RIQRIG----SSLSISHVEESD  285 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~----------~~~~~~----~~l~i~~~~~~d  285 (371)
                      .+|.+...+.+.. +.+|+.+.|.|.+.+  .+.+.|++||..+..+.          ++....    .+|.|.++..+|
T Consensus         7 p~~~~~~~l~d~~-v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D   83 (112)
T 2e6q_A            7 GTARLVAGLEDVQ-VYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQD   83 (112)
T ss_dssp             SCCCEEECCCCEE-EETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTT
T ss_pred             CCcEEecCCCCeE-EcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHH
Confidence            3466776777777 999999999999987  77899999999998887          766432    279999999999


Q ss_pred             CeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542        286 SGVWNCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       286 ~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      +|.|+|...+   ....++.|.|..+|.
T Consensus        84 ~G~Y~~~~~~---~~~ssA~L~V~~~p~  108 (112)
T 2e6q_A           84 SGALVGFSCP---GVQDSAALTIQESSG  108 (112)
T ss_dssp             CSEEEEEEET---TEEEEEEEEEECSSC
T ss_pred             CccEEEEEEC---CeeEEEEEEEeCCCc
Confidence            9999875443   445688999998876

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.37  E-value=4e-12  Score=91.49  Aligned_cols=83  Identities=14%  Similarity=0.305  Sum_probs=66.6

Q ss_pred             eeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccc--------cCCceEEe-----cceEEEeccCCCCCeEEEEEEEc
Q psy14542        229 HRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVE--------ESDRIQRI-----GSSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       229 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      .... +.+|++++|.|.+.+.|.+.+.|++++..+.        ...++...     ..+|.|.+++.+|+|.|+|.+.|
T Consensus         9 ~~~~-v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n   87 (124)
T 3rbg_A            9 ETIT-VEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYS   87 (124)
T ss_dssp             EEEE-EETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEES
T ss_pred             ccEE-EcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEEc
Confidence            3344 8999999999999999999999998665421        33444432     35899999999999999999999


Q ss_pred             CCCCceeEEEEEEecCcc
Q psy14542        296 SEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       296 ~~g~~~~~~~l~v~~~p~  313 (371)
                      . |.....+.|.|..+|.
T Consensus        88 ~-g~~~~~~~l~V~~~P~  104 (124)
T 3rbg_A           88 D-SVSTKEVKVIVLATMK  104 (124)
T ss_dssp             S-SEEEEEEEEEEECC--
T ss_pred             C-CCCcEEEEEEEEeCCC
Confidence            9 9899999999998887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	371
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	4e-14
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	2e-05
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	0.001
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	6e-14
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	9e-08
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	4e-05
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	6e-13
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	5e-06
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	4e-04
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	4e-11
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	1e-05
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	3e-04
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	5e-11
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	6e-11
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	1e-07
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	9e-06
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	4e-10
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	6e-10
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	1e-09
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	2e-04
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	1e-09
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-09
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-04
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	0.002
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-09
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-04
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	3e-09
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	0.004
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	3e-09
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	5e-09
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	0.002
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	7e-09
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	9e-09
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	1e-08
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	2e-08
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	0.002
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-08
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	8e-08
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	9e-08
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	5e-04
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	3e-07
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	3e-07
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	0.002
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	4e-07
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	3e-04
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	4e-07
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	8e-07
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	1e-06
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	2e-06
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	2e-06
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	7e-06
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	2e-05
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	3e-06
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	0.004
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	6e-06
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	1e-05
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	3e-05
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	4e-05
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	5e-05
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	7e-05
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	9e-05
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	1e-04
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	1e-04
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	2e-04
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	2e-04
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	2e-04
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	2e-04
d1f2qa1	82	b.1.1.4 (A:4-85) IgE high affinity receptor alpha	2e-04
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	3e-04
d1fnla1	84	b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3	4e-04
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	0.001
d2fcba1	85	b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD3	0.003
d1jbja2	100	b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fra	0.003
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	0.004
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	0.004
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	0.004

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 65.6 bits (159), Expect = 4e-14
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GSSLSISHVEES 284
           R+  V    +V   C A GNP+PT++W K     ++  RI          SL +  V  S
Sbjct: 13  RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS 72

Query: 285 DSGVWNCVANNSEGQDK 301
           D G + CV  N  G   
Sbjct: 73  DKGNYTCVVENEYGSIN 89

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 2e-05
 Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 12/89 (13%)

Query: 14 EMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE----------VLVL 63
          +M      V    + ++  C      + + + WLK+G   ++               L++
Sbjct: 9  KMEKRLHAV-PAANTVKFRCPAGGNPMPTMR-WLKNGKEFKQEHRIGGYKVRNQHWSLIM 66

Query: 64 DRVQREDAGMYQCHVSADDDSAQMSAQVI 92
          + V   D G Y C V  +  S   +  + 
Sbjct: 67 ESVVPSDKGNYTCVVENEYGSINHTYHLD 95

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 0.001
 Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 11/83 (13%)

Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE----------VLVLDRVQRED 155
             V   + ++  C      + + + WLK+G   ++               L+++ V   D
Sbjct: 15  HAVPAANTVKFRCPAGGNPMPTMR-WLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSD 73

Query: 156 AGMYQCHIEDGKYHMLSSGELII 178
            G Y C +E+    +  +  L +
Sbjct: 74  KGNYTCVVENEYGSINHTYHLDV 96

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 64.8 bits (157), Expect = 6e-14
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 3/88 (3%)

Query: 222 AAKMFEKH--RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSIS 279
           +A  +E+   +++ VK+ + V +PC   G P P + W     P+    R     S L I 
Sbjct: 1   SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSG-GRATVTDSGLVIK 59

Query: 280 HVEESDSGVWNCVANNSEGQDKMQLFIQ 307
            V+  D G + C A N  G    +  +Q
Sbjct: 60  GVKNGDKGYYGCRATNEHGDKYFETLVQ 87

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 47.1 bits (111), Expect = 9e-08
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 9  SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS----DEVLVLD 64
          S+   E  P   +VV  G  + + C+V+     +   W  +   L        D  LV+ 
Sbjct: 1  SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVV-WSHNAKPLSGGRATVTDSGLVIK 59

Query: 65 RVQREDAGMYQCHVSADDDSAQMSAQV 91
           V+  D G Y C  + +         V
Sbjct: 60 GVKNGDKGYYGCRATNEHGDKYFETLV 86

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 39.7 bits (92), Expect = 4e-05
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 5/81 (6%)

Query: 103 SNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS----DEVLVLDRVQREDAGM 158
              +VV  G  + + C+V+     +   W  +   L        D  LV+  V+  D G 
Sbjct: 10  EKVIVVKQGQDVTIPCKVTGLPAPNVV-WSHNAKPLSGGRATVTDSGLVIKGVKNGDKGY 68

Query: 159 YQCHIEDGKYHMLSSGELIIH 179
           Y C   +          + ++
Sbjct: 69  YGCRATNEHGDKYFETLVQVN 89

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (150), Expect = 6e-13
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ----RIGSSLSISHVEESDSG 287
             V+  ESV L     G    T  W K    ++ES+ ++      GS L+I    +   G
Sbjct: 10  QKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCG 69

Query: 288 VWNCVANNSEGQDK 301
            +  +  N  G  +
Sbjct: 70  CYTLLVENKLGSRQ 83

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 5e-06
 Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 10/81 (12%)

Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQREDA 71
            V  G  +EL  +V+  +  +   W+K    ++ +             L +   ++E  
Sbjct: 10 QKVRAGESVELFGKVTGTQPITCT-WMKFRKQIQESEHMKVENSENGSKLTILAARQEHC 68

Query: 72 GMYQCHVSADDDSAQMSAQVI 92
          G Y   V     S Q    + 
Sbjct: 69 GCYTLLVENKLGSRQAQVNLT 89

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 4e-04
 Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 10/85 (11%)

Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQREDA 156
             V  G  +EL  +V+  +  +   W+K    ++ +             L +   ++E  
Sbjct: 10  QKVRAGESVELFGKVTGTQPITCT-WMKFRKQIQESEHMKVENSENGSKLTILAARQEHC 68

Query: 157 GMYQCHIEDGKYHMLSSGELIIHQV 181
           G Y   +E+      +   L +   
Sbjct: 69  GCYTLLVENKLGSRQAQVNLTVVDK 93

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 56.8 bits (136), Expect = 4e-11
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVA 293
                 +   C A G P P ++W +   P+   +RI+  G  L  S +   DSG++ CVA
Sbjct: 13  ADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVA 72

Query: 294 NNSEGQDK--MQLFIQ 307
            N  G      +L +Q
Sbjct: 73  ENKHGTVYASAELTVQ 88

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 4/76 (5%)

Query: 21 VVVDVGHRIELHCRVS----PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 76
             D+G  +   C  S    P                   S   L   ++  ED+GMYQC
Sbjct: 11 TEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQC 70

Query: 77 HVSADDDSAQMSAQVI 92
                 +   SA++ 
Sbjct: 71 VAENKHGTVYASAELT 86

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.2 bits (85), Expect = 3e-04
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 4/77 (5%)

Query: 106 VVVDVGHRIELHCRVS----PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 161
              D+G  +   C  S    P                   S   L   ++  ED+GMYQC
Sbjct: 11  TEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQC 70

Query: 162 HIEDGKYHMLSSGELII 178
             E+    + +S EL +
Sbjct: 71  VAENKHGTVYASAELTV 87

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 5e-11
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 11/77 (14%)

Query: 242 LPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----------GSSLSISHVEESDSGVWN 290
           +P S  G P P+++W    S + E+  I                 L ++     ++G + 
Sbjct: 20  IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79

Query: 291 CVANNSEGQDKMQLFIQ 307
            +A N  GQ    +   
Sbjct: 80  LLAANPFGQASASIMAA 96

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 56.4 bits (135), Expect = 6e-11
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNC 291
                 + V L C A GNP+P IKW K D    ++ +       L I +V+  D G + C
Sbjct: 15  TYALTGQMVTLECFAFGNPVPQIKWRKLDGS--QTSKWLSSEPLLHIQNVDFEDEGTYEC 72

Query: 292 VANNSEGQD--KMQLFIQ 307
            A N +G+D  + ++ I 
Sbjct: 73  EAENIKGRDTYQGRIIIH 90

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.7 bits (110), Expect = 1e-07
 Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 2/83 (2%)

Query: 12 SIEMSPSGQVVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE 69
          SI+           G  + L C     P      +           +S+ +L +  V  E
Sbjct: 6  SIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFE 65

Query: 70 DAGMYQCHVSADDDSAQMSAQVI 92
          D G Y+C             ++I
Sbjct: 66 DEGTYECEAENIKGRDTYQGRII 88

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.7 bits (97), Expect = 9e-06
 Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 2/84 (2%)

Query: 98  VEIASSNQVVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRED 155
           ++           G  + L C     P      +           +S+ +L +  V  ED
Sbjct: 7   IKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFED 66

Query: 156 AGMYQCHIEDGKYHMLSSGELIIH 179
            G Y+C  E+ K      G +IIH
Sbjct: 67  EGTYECEAENIKGRDTYQGRIIIH 90

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.1 bits (129), Expect = 4e-10
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 237 DESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR---IGSSLSISHVEESDSGVWNCVA 293
           +E V L C A+ NP  T +W    + ++     +     G  +  + V+  D+G + CVA
Sbjct: 22  EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVA 81

Query: 294 NNSEGQ 299
            N+ G 
Sbjct: 82  TNARGT 87

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 6e-10
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 7/70 (10%)

Query: 238 ESVILPC------SAQGNPLPTIKWYKQDSPVEESDRIQRI-GSSLSISHVEESDSGVWN 290
               L C        + N LP ++WYK   P+   +         L + +V E   G + 
Sbjct: 15  GDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYT 74

Query: 291 CVANNSEGQD 300
           C A+ +    
Sbjct: 75  CHASYTYLGK 84

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.0 bits (126), Expect = 1e-09
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSG 287
             V + +S    C    +  P + W+K D  +++S +  +        L+I+ V+  D G
Sbjct: 11  TEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKG 70

Query: 288 VWNCVANNSEGQDKMQLFIQ 307
            +   A NS G  +  +F+ 
Sbjct: 71  EYTVRAKNSYGTKEEIVFLN 90

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (87), Expect = 2e-04
 Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 8/80 (10%)

Query: 21 VVVDVGHRIELHCRVS--PK------RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAG 72
            V  G     +CRV           +           +     +D  L ++RV+ +D G
Sbjct: 11 TEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKG 70

Query: 73 MYQCHVSADDDSAQMSAQVI 92
           Y         + +    + 
Sbjct: 71 EYTVRAKNSYGTKEEIVFLN 90

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 1e-09
 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 9/87 (10%)

Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI---------GSSLSISH 280
            + +   D    +P + +GNP P ++W+   + + ES  I               L + +
Sbjct: 9   FLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDN 68

Query: 281 VEESDSGVWNCVANNSEGQDKMQLFIQ 307
               ++G +  +A N  G+D+ Q+   
Sbjct: 69  PTHMNNGDYTLIAKNEYGKDEKQISAH 95

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.0 bits (126), Expect = 1e-09
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 238 ESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI------GSSLSISHVEESDSGVWNC 291
           +SV L C A G P PT+ W K   P+E  +            S L+I +V+++D   + C
Sbjct: 21  QSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVC 80

Query: 292 VANNSEGQDK 301
           +A N  G+  
Sbjct: 81  IAENKAGEQD 90

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.7 bits (89), Expect = 1e-04
 Identities = 11/91 (12%), Positives = 22/91 (24%), Gaps = 11/91 (12%)

Query: 12 SIEMSPS-GQVVVDVGHRIELHCRVS----------PKRLSSAKAWLKDGLVLRRNSDEV 60
          +++   S      ++G  + L C                         D   +  +    
Sbjct: 5  TVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSE 64

Query: 61 LVLDRVQREDAGMYQCHVSADDDSAQMSAQV 91
          L +  V + D   Y C           S  +
Sbjct: 65 LTIRNVDKNDEAEYVCIAENKAGEQDASIHL 95

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 13/88 (14%), Positives = 23/88 (26%), Gaps = 10/88 (11%)

Query: 102 SSNQVVVDVGHRIELHCRVS----------PKRLSSAKAWLKDGLVLRRNSDEVLVLDRV 151
           S      ++G  + L C                         D   +  +    L +  V
Sbjct: 11  SIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNV 70

Query: 152 QREDAGMYQCHIEDGKYHMLSSGELIIH 179
            + D   Y C  E+      +S  L + 
Sbjct: 71  DKNDEAEYVCIAENKAGEQDASIHLKVF 98

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 2e-09
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 224 KMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS----SLSIS 279
           ++  K R + V + ES    C   G P+PT+ W ++   +  S R Q   +    +  IS
Sbjct: 1   RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEIS 60

Query: 280 HVEESDSGVWNCVANNSEGQDK--MQLFIQ 307
            V+ SD G ++ V  NSEG+ +    L IQ
Sbjct: 61  SVQASDEGNYSVVVENSEGKQEAEFTLTIQ 90

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 3e-04
 Identities = 12/80 (15%), Positives = 18/80 (22%), Gaps = 8/80 (10%)

Query: 21 VVVDVGHRIELHCRVS--PK------RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAG 72
          + V  G      C     P       R     +      V          +  VQ  D G
Sbjct: 9  MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEG 68

Query: 73 MYQCHVSADDDSAQMSAQVI 92
           Y   V   +   +    + 
Sbjct: 69 NYSVVVENSEGKQEAEFTLT 88

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 3e-09
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI------GSSLSISHVEESD 285
           L V + + V L CS +G   P I+W K  + V+  D++            LS+  VE SD
Sbjct: 6   LTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSD 65

Query: 286 SGVWNCVANNSEGQD 300
           +G + C   +    +
Sbjct: 66  AGRYWCQVEDGGETE 80

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (77), Expect = 0.004
 Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 11/74 (14%)

Query: 16 SPSGQVVVDVGHRIELHCRVS----PKRLSSAKAWLKDGLVLRRNSDE------VLVLDR 65
          +P  ++ V  G  ++L+C V     P         +   L               L L  
Sbjct: 2  APV-KLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKS 60

Query: 66 VQREDAGMYQCHVS 79
          V+R DAG Y C V 
Sbjct: 61 VERSDAGRYWCQVE 74

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 3e-09
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 227 EKHRILNVKKDESVILPCSA-QGNPLPTIKWY----KQDSPVEESDRIQRIGSSLSISHV 281
           E+  IL    +E  + PC         TI WY    K     E++ RI +    L     
Sbjct: 7   EEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPA 66

Query: 282 EESDSGVWNCVANNSEGQDKM 302
           +  DSG + CV  NS    ++
Sbjct: 67  KVEDSGHYYCVVRNSSYCLRI 87

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 5e-09
 Identities = 16/84 (19%), Positives = 23/84 (27%), Gaps = 17/84 (20%)

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----------------GSSL 276
                 V   C    +  P I+W K             +                    L
Sbjct: 17  TVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVL 76

Query: 277 SISHVEESDSGVWNCVANNSEGQD 300
            I +V   D+G + C+A NS G  
Sbjct: 77  YIRNVTFEDAGEYTCLAGNSIGIS 100

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 21/101 (20%)

Query: 13  IEMSPSGQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDE---------- 59
           ++          VG  +E  C+V       +   K   K+G     +             
Sbjct: 7   LQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGV 66

Query: 60  --------VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
                   VL +  V  EDAG Y C        +  SA + 
Sbjct: 67  NTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLT 107

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 50.7 bits (120), Expect = 7e-09
 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 6/74 (8%)

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI------GSSLSISHVEESDSG 287
            K  +  ++ C    NP+    ++K    V  +   +        G  L        D G
Sbjct: 15  AKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEG 74

Query: 288 VWNCVANNSEGQDK 301
           V+ C  +N  G+ +
Sbjct: 75  VYTCEVDNGVGKPQ 88

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 9e-09
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 11/89 (12%)

Query: 230 RILNVKKDES---VILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--------GSSLSI 278
           R++++++ E      +    +GNP PT+ W     P+ ES  I              L  
Sbjct: 7   RVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLF 66

Query: 279 SHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
           +     ++G +  +A N  G     +   
Sbjct: 67  NKPTHYNNGNYTLIAKNPLGTANQTINGH 95

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.0 bits (118), Expect = 1e-08
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 227 EKHRILNVKKDESVILPCSAQ-GNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESD 285
           E+ R  +V+    V   C+A+  +P  T+ W +  +    S  +   G  L+I +V+ SD
Sbjct: 7   EEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGI-LTIRNVQPSD 65

Query: 286 SGVWNCVANNSEGQDK--MQLFIQ 307
           +G + C  +N    D+    L +Q
Sbjct: 66  AGTYVCTGSNMFAMDQGTATLHVQ 89

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.5 bits (117), Expect = 2e-08
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 3/72 (4%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD---RIQRIGSSLSISHVEESDSGV 288
              K+ E  ++ C    +  PTI W  +   V        I    + L I  ++++D G 
Sbjct: 11  QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGT 70

Query: 289 WNCVANNSEGQD 300
           + C        +
Sbjct: 71  YRCEGRILARGE 82

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 10/91 (10%)

Query: 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD-------EVLVL 63
          L  + +P+ Q     G    + C V      +     K   V+ +            L +
Sbjct: 2  LMFKNAPTPQEFK-EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI 60

Query: 64 DRVQREDAGMYQCHVS--ADDDSAQMSAQVI 92
            +++ D G Y+C     A  +      QVI
Sbjct: 61 RGIKKTDEGTYRCEGRILARGEINFKDIQVI 91

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 2e-08
 Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSIS 279
           + A K+FE+ +   V +           G P P  +WYK    +E SDRI       ++ 
Sbjct: 2   MEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVC 61

Query: 280 H-----VEESDSGVWNCVANNSEGQDK 301
                 V   DS      A N  G+  
Sbjct: 62  ELVIRDVTGEDSASIMVKAINIAGETS 88

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 8e-08
 Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 33/109 (30%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI------------------- 272
           + V     + L     G+P PT+ W K  +   ++                         
Sbjct: 19  IVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLL 78

Query: 273 --------------GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
                          S  ++   E+ D GV+     N  G+D++ L ++
Sbjct: 79  CETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 127

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 9e-08
 Identities = 10/71 (14%), Positives = 22/71 (30%), Gaps = 7/71 (9%)

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI------GSSLSISHVEESDSG 287
               E V L C         +KW+K    +    + +           L I    ++D+ 
Sbjct: 12  AYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAA 70

Query: 288 VWNCVANNSEG 298
            ++ +    + 
Sbjct: 71  EYSVMTTGGQS 81

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 5e-04
 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 9/79 (11%)

Query: 21 VVVDVGHRIELHCRVS--PKRLSSAKAWLKDGL-------VLRRNSDEVLVLDRVQREDA 71
               G R+EL C VS     +   K   +          +       +L+++   + DA
Sbjct: 10 TTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADA 69

Query: 72 GMYQCHVSADDDSAQMSAQ 90
            Y    +    SA++S  
Sbjct: 70 AEYSVMTTGGQSSAKLSVD 88

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 3e-07
 Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 12/81 (14%)

Query: 233 NVKKDESVILPCSAQ-GNPLPTIKWYKQDSPVEESDRIQRI-----------GSSLSISH 280
           +       +L CS Q G+P     W+K    +  + +  R               L    
Sbjct: 13  SATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDP 72

Query: 281 VEESDSGVWNCVANNSEGQDK 301
           +  SD+G ++C A N  G   
Sbjct: 73  LSASDTGEYSCEARNGYGTPM 93

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.2 bits (108), Expect = 3e-07
 Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 13/82 (15%)

Query: 233 NVKKDESVILPCSA-QGNPLPTIKWYKQDSPVEESDRIQRIG------------SSLSIS 279
           +V      +L CS   G+P     W+K    +  +D  +                 L   
Sbjct: 13  SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFD 72

Query: 280 HVEESDSGVWNCVANNSEGQDK 301
            V   DSG + C A N  G   
Sbjct: 73  PVTAFDSGEYYCQAQNGYGTAM 94

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 17/91 (18%)

Query: 20  QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE-----------------VLV 62
              V +G+R  L C        S  +W KDG+ +     +                  L+
Sbjct: 11  PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLI 70

Query: 63  LDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93
            D V   D+G Y C       +A  S    +
Sbjct: 71  FDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 101

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 46.0 bits (108), Expect = 4e-07
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 7/83 (8%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GSSLSISHVEESDS 286
           + V +  +    C  +G P P + W+K D+PV+ES   Q         SL+IS V   D 
Sbjct: 18  MEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDD 77

Query: 287 GVWNCVANNSEGQD--KMQLFIQ 307
             + C A NS G+     +L ++
Sbjct: 78  AKYTCKAVNSLGEATCTAELLVE 100

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 37.6 bits (86), Expect = 3e-04
 Identities = 12/81 (14%), Positives = 22/81 (27%), Gaps = 9/81 (11%)

Query: 21 VVVDVGHRIELHCRVSPKRLSS---------AKAWLKDGLVLRRNSDEVLVLDRVQREDA 71
          + V  G      C+V                 K      +      +  L +  V  +D 
Sbjct: 18 MEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDD 77

Query: 72 GMYQCHVSADDDSAQMSAQVI 92
            Y C        A  +A+++
Sbjct: 78 AKYTCKAVNSLGEATCTAELL 98

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 4e-07
 Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 7/80 (8%)

Query: 226 FEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-------GSSLSI 278
           F + + + V   +     CSA G  +   + + Q   V ++   +          +S ++
Sbjct: 5   FLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNV 64

Query: 279 SHVEESDSGVWNCVANNSEG 298
            +  + D+G + C+     G
Sbjct: 65  VNTTKRDAGKYRCMIRTEGG 84

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 8e-07
 Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 17/98 (17%)

Query: 228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ----------------R 271
            +  + V     + L C+  G       W    S ++E D +                  
Sbjct: 8   ANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRST 67

Query: 272 IGSSLSISHVEESDSGV-WNCVANNSEGQDKMQLFIQY 308
           + + L+IS +E       + C A N+ G D   + + Y
Sbjct: 68  LITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 1e-06
 Identities = 7/78 (8%), Positives = 23/78 (29%), Gaps = 4/78 (5%)

Query: 232 LNVKKDESVILPCSAQG---NPLPTIKWYKQDSPVEESDRIQRIGSS-LSISHVEESDSG 287
                 + + L C  +G       T+   + +  ++    +        ++    +    
Sbjct: 14  SWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGA 73

Query: 288 VWNCVANNSEGQDKMQLF 305
            ++C          ++LF
Sbjct: 74  QFSCRTELDLRPQGLELF 91

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 2e-06
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 9/69 (13%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNC 291
               ++      C A GNPLP +K  K  +          +              G + C
Sbjct: 14  WTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTV---------TRDLEGTYLC 64

Query: 292 VANNSEGQD 300
            A +++G+ 
Sbjct: 65  RARSTQGEV 73

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 2e-06
 Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 2/67 (2%)

Query: 232 LNVKKDESVILPCSAQGNPLP-TIKWYKQDSPVEESDR-IQRIGSSLSISHVEESDSGVW 289
           L     +SV L C         T+ W  +             +G  L +  V+  DSG +
Sbjct: 16  LTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNY 75

Query: 290 NCVANNS 296
           +C     
Sbjct: 76  SCYRAGR 82

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 7e-06
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 6/69 (8%)

Query: 17 PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL------RRNSDEVLVLDRVQRED 70
            G +    G  + L C       ++   W+                   L+L  VQ  D
Sbjct: 12 ARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHD 71

Query: 71 AGMYQCHVS 79
          +G Y C+ +
Sbjct: 72 SGNYSCYRA 80

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-05
 Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 9/84 (10%)

Query: 102 SSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL------RRNSDEVLVLDRVQRED 155
           +   +    G  + L C       ++   W+                   L+L  VQ  D
Sbjct: 12  ARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHD 71

Query: 156 AGMYQCHIEDGKYHMLSSGELIIH 179
           +G Y C+          +  L++ 
Sbjct: 72  SGNYSCYRAG---RPAGTVHLLVD 92

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 3e-06
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 15/89 (16%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--------------GSSLS 277
           +      +V     +   PL  + W KQ   V E +  +                  SL+
Sbjct: 5   IYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLT 63

Query: 278 ISHVEESDSGVWNCVANNSEGQDKMQLFI 306
           I ++  SD   +   + N     K  L++
Sbjct: 64  IYNLTSSDEDEYEMESPNITDTMKFFLYV 92

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (77), Expect = 0.004
 Identities = 12/92 (13%), Positives = 23/92 (25%), Gaps = 17/92 (18%)

Query: 18 SGQVVVDVGHRIELHCRVS-PKRLSSAKAWLKDGLVLRRNSDEV---------------- 60
          S Q+   V   +  H   + P +    K        L  +                    
Sbjct: 2  SQQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS 61

Query: 61 LVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
          L +  +   D   Y+       D+ +    V+
Sbjct: 62 LTIYNLTSSDEDEYEMESPNITDTMKFFLYVL 93

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 42.3 bits (98), Expect = 6e-06
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 4/72 (5%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWY----KQDSPVEESDRIQRIGSSLSISHVEESDSG 287
           +  +++   +L C  +GN       +    K  +  E +  +++   SL     + SD G
Sbjct: 12  VLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEG 71

Query: 288 VWNCVANNSEGQ 299
            + C A    G 
Sbjct: 72  HYQCFAETPAGV 83

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 16/90 (17%)

Query: 227 EKHRILNVKKDESVILPCSAQGNPL---PTIKWYKQDSPVEESDRIQRI----------- 272
            + +   V    S+       G  L   P +KW+K       S   Q +           
Sbjct: 9   MRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASK 68

Query: 273 --GSSLSISHVEESDSGVWNCVANNSEGQD 300
                L I+  + + +G + C  +  +  D
Sbjct: 69  VYLFELHITDAQPAFTGGYRCEVSTKDKFD 98

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 3e-05
 Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 234 VKKDESVILPCSAQGN-PLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCV 292
            ++ E+++L C +  + PL  + +++     + S        + SI     S SG ++C 
Sbjct: 12  FQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSD----PNFSIPQANHSHSGDYHCT 67

Query: 293 ANNSEGQ---DKMQLFIQY 308
            N          + + +Q 
Sbjct: 68  GNIGYTLYSSKPVTITVQA 86

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 4e-05
 Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR-----IGSSLSISHVEESDSGV 288
           V K   + L      +    +KW K    ++ S             +L+IS    +D   
Sbjct: 18  VSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAA 76

Query: 289 WNCVANNSEG 298
           + CV    + 
Sbjct: 77  YQCVVGGEKC 86

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 5e-05
 Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 16/90 (17%)

Query: 227 EKHRILNVKKDESVILPCSAQGNPL---PTIKWYKQDSPVEESDRIQRI----------- 272
           EK +   VK  E +      +   L   PTIKW+K       S   + +           
Sbjct: 5   EKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSR 64

Query: 273 --GSSLSISHVEESDSGVWNCVANNSEGQD 300
                + I   +++ +G + C     +  D
Sbjct: 65  VYTFEMQIIKAKDNFAGNYRCEVTYKDKFD 94

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.6 bits (91), Expect = 7e-05
 Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 5/88 (5%)

Query: 227 EKHRILNVKKDESVILPCSA-QGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHV 281
           E+   + + +   V+  CS     P  + +W   + P       +R       +L I+  
Sbjct: 9   EERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKT 68

Query: 282 EESDSGVWNCVANNSEGQDKMQLFIQYA 309
           E SD G ++C A +        +F +++
Sbjct: 69  EASDLGNYSCFATSHIDFITKSVFSKFS 96

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 9e-05
 Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 10/83 (12%)

Query: 227 EKHRILNVKKDESVILPCSAQGNP-LPTIKWYKQDSPVEESDRIQRI---------GSSL 276
           ++    ++   +   L C  +     P + W K +         ++             L
Sbjct: 8   KRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFIL 67

Query: 277 SISHVEESDSGVWNCVANNSEGQ 299
               V  +D+G + C AN     
Sbjct: 68  HFEPVLPNDNGSYRCSANFQSNL 90

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 1e-04
 Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 12/88 (13%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWY------------KQDSPVEESDRIQRIGSSLSIS 279
           + + ++  V L C+  G   P ++W                      DR+  + + ++  
Sbjct: 14  VRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFK 73

Query: 280 HVEESDSGVWNCVANNSEGQDKMQLFIQ 307
            V   D+G + C+ +   G    ++ ++
Sbjct: 74  SVTREDTGTYTCMVSEEGGNSYGEVKVK 101

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (88), Expect = 1e-04
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 6/90 (6%)

Query: 224 KMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS----SLSIS 279
           K+    R + +K   +  L     G P PT  W   DS    +  +         S+   
Sbjct: 4   KILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFP 63

Query: 280 HVEESDSGVWNCVANNSEGQDK--MQLFIQ 307
             + +DSG +     N  G+D+   ++ +Q
Sbjct: 64  SAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 12/91 (13%)

Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPV-----------EESDRIQ 270
              +    +  +    E   + C  +  P P    +     V           E     +
Sbjct: 6   GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 65

Query: 271 RIGSSLSISHV-EESDSGVWNCVANNSEGQD 300
            + S+L+IS++       ++NC A NS G D
Sbjct: 66  GVISTLTISNIVRADFQTIYNCTAWNSFGSD 96

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 8/80 (10%)

Query: 234 VKKDESVILPCSAQGN-PLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCV 292
           V + + + L C    N  +  + +YK    ++          ++SI++    DSG + C 
Sbjct: 12  VMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYEN----HNISITNATVEDSGTYYCT 67

Query: 293 ANNSEGQ---DKMQLFIQYA 309
               +     + + + +  A
Sbjct: 68  GKVWQLDYESEPLNITVIKA 87

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (86), Expect = 2e-04
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 12/88 (13%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWY------------KQDSPVEESDRIQRIGSSLSIS 279
           + V ++ES+ L C+  G   P ++W                     +DR+    S ++ S
Sbjct: 11  VQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFS 70

Query: 280 HVEESDSGVWNCVANNSEGQDKMQLFIQ 307
            V   D+G + C+ +   GQ+  ++ I 
Sbjct: 71  SVTRKDNGEYTCMVSEEGGQNYGEVSIH 98

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 2e-04
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 12/81 (14%)

Query: 233 NVKKDESVILPCSAQGNPLPTI-------KWYKQDSPVEESDRIQRI----GSSLSISHV 281
           ++ + E+ +L C ++  P  T            +        R         S L I ++
Sbjct: 13  HINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENL 72

Query: 282 EESD-SGVWNCVANNSEGQDK 301
                 G + C   +S+G D+
Sbjct: 73  NMEADPGQYRCNGTSSKGSDQ 93

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 2e-04
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 5/72 (6%)

Query: 233 NVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCV 292
            + K E+V L C+       +   +  +         +   SSL+I + +  DSG + C 
Sbjct: 12  RIFKGENVTLTCNGNNFFEVSSTKWFHNG-----SLSEETNSSLNIVNAKFEDSGEYKCQ 66

Query: 293 ANNSEGQDKMQL 304
                  + + L
Sbjct: 67  HQQVNESEPVYL 78

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 3e-04
 Identities = 10/71 (14%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ----RIGSSLSISHVEESDSG 287
           + V   E+          P    +W  +  P+  S   +         L + + +   +G
Sbjct: 11  VEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTG 69

Query: 288 VWNCVANNSEG 298
             +  A N++ 
Sbjct: 70  EVSFQAANAKS 80

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 4e-04
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 233 NVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCV 292
           +V + +SV L C    +P      +  +        I    SS  I     +DSG + C 
Sbjct: 16  SVLEKDSVTLKCQGAYSPEDNSTQWFHNES-----LISSQASSYFIDAATVNDSGEYRCQ 70

Query: 293 ANNSEGQDKMQL 304
            N S   D +QL
Sbjct: 71  TNLSTLSDPVQL 82

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 13/76 (17%)

Query: 238 ESVILPCS--AQGNPLPTIKWYKQD----------SPVEESDRIQRIGS-SLSISHVEES 284
             + L        + +  ++W +             P  +S   + + +  L I ++   
Sbjct: 11  HGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRD 70

Query: 285 DSGVWNCVANNSEGQD 300
           DSG +N    ++ G  
Sbjct: 71  DSGTYNVTVYSTNGTR 86

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 34.2 bits (77), Expect = 0.003
 Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 5/72 (6%)

Query: 233 NVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCV 292
           NV +++SV L C    +P      +  +        I              +DSG + C 
Sbjct: 15  NVLQEDSVTLTCRGTHSPESDSIQWFHNGN-----LIPTHTQPSYRFKANNNDSGEYTCQ 69

Query: 293 ANNSEGQDKMQL 304
              +   D + L
Sbjct: 70  TGQTSLSDPVHL 81

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDR-VQREDAGMYQCHVSADDDS 84
          G  +EL C   P        W K+G  L +  D+ LVL    + ED+G Y C+  A + +
Sbjct: 14 GTSVELTC---PLDSDENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKN 70

Query: 85 AQM 87
            +
Sbjct: 71 TYL 73

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (77), Expect = 0.004
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 232 LNVKKDESVILPCSAQ-GNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWN 290
           L V  +    L C A       TI W++  + +        + +         + S +++
Sbjct: 11  LAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNV-----TGVTQSTMFS 65

Query: 291 CVANNSEG 298
           C A+N +G
Sbjct: 66  CEAHNLKG 73

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 15/96 (15%), Positives = 25/96 (26%), Gaps = 27/96 (28%)

Query: 232 LNVKKDESVILPCSAQGNP-LPTIKWYKQDSPVEESDRIQRIG----------------- 273
           +     +   LPC          ++     SP      + R G                 
Sbjct: 12  IRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTEL 71

Query: 274 ---------SSLSISHVEESDSGVWNCVANNSEGQD 300
                     +L I +V  SD G + C   +   Q+
Sbjct: 72  LKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQE 107

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 17/109 (15%), Positives = 28/109 (25%), Gaps = 31/109 (28%)

Query: 15  MSPSGQVVVDVGHRIELHCRVSPK-------------RLSSAKAWLKDGLVLRRNSDE-- 59
           + P   +   VG   EL CR+SP                S      ++G           
Sbjct: 6   IGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEY 65

Query: 60  ----------------VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
                            L +  V+  D G Y C         + + ++ 
Sbjct: 66  RGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELK 114

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	371
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.76
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.72
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.68
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.68
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.67
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.67
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.65
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.65
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.63
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.62
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.62
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.61
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.61
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.61
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.61
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.6
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.59
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.59
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.59
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.59
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.59
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.58
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.58
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.58
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.58
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.57
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.57
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.57
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.57
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.57
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.57
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.56
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.56
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.55
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.55
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.55
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.54
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.54
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.54
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.53
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.53
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.53
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.53
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.52
d2avga1	110	Cardiac myosin binding protein C, different domain	99.52
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.52
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.51
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.5
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.5
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.5
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.5
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.5
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.49
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.49
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.49
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.49
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.47
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.47
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.47
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.47
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.47
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.47
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.46
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.46
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.46
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.46
d2avga1	110	Cardiac myosin binding protein C, different domain	99.46
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.46
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.46
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.45
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.45
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.45
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.44
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.43
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.43
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.43
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.42
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.41
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.4
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.4
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.4
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.4
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.39
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.39
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.39
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.38
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.38
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.38
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.38
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.38
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.37
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.36
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.36
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.36
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.36
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.35
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.35
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.35
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.34
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.32
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.32
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.3
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.29
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.29
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.28
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.28
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.28
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.26
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.26
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.25
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.25
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.24
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.24
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.23
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.22
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.15
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.15
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.08
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	99.05
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	99.03
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.0
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.93
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.92
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.86
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.86
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.86
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.84
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.84
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.83
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.79
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.78
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.77
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.74
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.71
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.7
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.69
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.68
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.68
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.68
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.67
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.66
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.66
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.66
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.66
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.65
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.64
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.63
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.62
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.62
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.62
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.62
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.61
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.6
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.6
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.59
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.59
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.57
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.57
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.57
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.56
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.56
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.55
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.55
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.55
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.55
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.54
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.54
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.52
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.52
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.51
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.51
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.51
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.5
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.5
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.5
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.49
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.49
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.48
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.47
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.46
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.46
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.45
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.44
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.43
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.42
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.41
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.41
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.4
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.4
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.4
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.4
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.4
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.39
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.38
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.38
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.37
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.37
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.37
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.36
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.36
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.35
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.34
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.34
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.34
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.32
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.32
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.3
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.3
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.3
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.3
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.29
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.29
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.28
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.28
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	98.27
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.26
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.26
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.23
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.23
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.22
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.22
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.2
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.2
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.2
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.19
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.18
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.17
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.16
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.16
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.15
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.15
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.15
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.14
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.13
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.13
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	98.13
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	98.13
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.12
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.12
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.11
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.11
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.11
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.1
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.1
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.1
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.09
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.08
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.08
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.08
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.08
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.07
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.07
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.07
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.07
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.06
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.06
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.06
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.06
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.06
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.06
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.05
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	98.05
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.04
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	98.04
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.04
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.02
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.02
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.01
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.0
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	98.0
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.0
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	97.99
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.99
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	97.99
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.98
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.98
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.98
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.97
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.97
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.97
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.96
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.95
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.94
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.94
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.94
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.93
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.93
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.91
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.9
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.89
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.89
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.89
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.88
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.88
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.87
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.87
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.86
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.86
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.86
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.85
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.85
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.84
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.84
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.84
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.83
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.83
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.82
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.82
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.81
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.81
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.8
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.79
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.79
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.79
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.78
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.77
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.76
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.76
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.76
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.76
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.76
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.76
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.73
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.73
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.73
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.72
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.72
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.72
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.72
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.71
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.71
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.7
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.7
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.7
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.7
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.69
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.69
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.69
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.69
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.68
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.68
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.68
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.67
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.67
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.67
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.67
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.67
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.67
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.66
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.66
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.66
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.65
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.65
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.64
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.64
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.64
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.64
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.63
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.63
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.62
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.62
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.61
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.61
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.61
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.6
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.6
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.6
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.6
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.6
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.6
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.6
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.59
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.59
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.59
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.59
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.59
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.59
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.59
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.58
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.58
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.58
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.57
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.57
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.57
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.56
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.56
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.56
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.56
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.56
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.56
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.55
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.55
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.55
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.55
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.55
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.55
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.54
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.54
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.54
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.54
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.53
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.53
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.53
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.52
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.52
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.51
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.51
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.51
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.51
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.49
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.49
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.49
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.48
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.48
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.48
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.48
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.48
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.48
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.48
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.47
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.47
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.46
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.46
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.46
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.45
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.45
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.45
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.45
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.44
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.43
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.42
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.42
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.41
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.41
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.4
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	97.39
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	97.37
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.36
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.35
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.35
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.34
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.33
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.33
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.32
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.31
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.29
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.29
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.28
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.27
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.27
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.27
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.27
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.26
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.26
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.26
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.26
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.25
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.23
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	97.23
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	97.23
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.22
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.21
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	97.21
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.2
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.2
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.19
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.19
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.19
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.18
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.17
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.17
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.16
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.16
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	97.16
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.15
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.13
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.13
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.12
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.12
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.11
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.11
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.11
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.1
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.1
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.1
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.09
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.09
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	97.08
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.07
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.06
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	97.06
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.05
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.05
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	97.04
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.04
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.03
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.02
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.02
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.01

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.76  E-value=2.3e-18  Score=114.21  Aligned_cols=87  Identities=23%  Similarity=0.437  Sum_probs=79.6

Q ss_pred             cceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCce
Q psy14542        222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDK  301 (371)
Q Consensus       222 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  301 (371)
                      |.+...+.+.. +..|+++.|.|.+.|.|.|.+.|++||..+..+.++...++.|.|.++..+|+|.|+|.|.|..|...
T Consensus         2 P~f~~~~~~~~-v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   80 (89)
T d1cs6a4           2 PDWLDVITDTE-ADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVY   80 (89)
T ss_dssp             EEEEECCCCEE-EETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CCeEEECCCEE-ECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeeeeeeEEEEeecccCCEEEEEEEEeCCCEEE
Confidence            55666666666 99999999999999999999999999999999999888889999999999999999999999999998


Q ss_pred             eEEEEEEe
Q psy14542        302 MQLFIQYA  309 (371)
Q Consensus       302 ~~~~l~v~  309 (371)
                      .++.|.|.
T Consensus        81 ~~~~l~V~   88 (89)
T d1cs6a4          81 ASAELTVQ   88 (89)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            89988885

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.72  E-value=2.2e-17  Score=109.50  Aligned_cols=88  Identities=25%  Similarity=0.532  Sum_probs=74.1

Q ss_pred             ccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        221 SAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       221 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      +|.+...+.....+.+|+.+.|.|.+.|.|.|.+.|++++..+.. .++...++.|.|.++..+|+|.|+|.|.|..|..
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~   80 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSG-GRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDK   80 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCS-SSEEEETTEEEESSCCSTTCEEEEEEEEETTEEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCcc-ccEEEeeeeEEECCCChhhCEEEEEEEEECCCEE
Confidence            355555444333388999999999999999999999999999864 4566677889999999999999999999999999


Q ss_pred             eeEEEEEEe
Q psy14542        301 KMQLFIQYA  309 (371)
Q Consensus       301 ~~~~~l~v~  309 (371)
                      ...+.|.|.
T Consensus        81 ~~~~~l~V~   89 (89)
T d1biha4          81 YFETLVQVN   89 (89)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEC
Confidence            988888874

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6.6e-17  Score=110.16  Aligned_cols=89  Identities=21%  Similarity=0.262  Sum_probs=77.0

Q ss_pred             eeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe----cceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        224 KMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       224 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      +...+.... +..|+.+.|.|.+.|.|.+.+.|++++..+....++...    ..+|.|.++..+|+|.|+|.|.|..|.
T Consensus         3 ~~~~p~~~~-v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   81 (101)
T d2cqva1           3 IIQFPEDQK-VRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGS   81 (101)
T ss_dssp             ESCCCCSEE-EETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCE
T ss_pred             EEeeCCcEE-EeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCE
Confidence            334445555 899999999999999999999999999999888777632    236999999999999999999999999


Q ss_pred             ceeEEEEEEecCcc
Q psy14542        300 DKMQLFIQYAHGKY  313 (371)
Q Consensus       300 ~~~~~~l~v~~~p~  313 (371)
                      ...++.|.|.++|.
T Consensus        82 ~~~~~~l~V~~~P~   95 (101)
T d2cqva1          82 RQAQVNLTVVDKPD   95 (101)
T ss_dssp             EECCEEEEEECSCS
T ss_pred             EEEEEEEEEEecCC
Confidence            99999999998776

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.68  E-value=4.2e-17  Score=110.30  Aligned_cols=90  Identities=20%  Similarity=0.333  Sum_probs=76.7

Q ss_pred             cceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE----ecceEEEeccCCCCCeEEEEEEEcCC
Q psy14542        222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR----IGSSLSISHVEESDSGVWNCVANNSE  297 (371)
Q Consensus       222 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~  297 (371)
                      |.|...+.+.. +.+|+.+.|.|.+.|.|.|.+.|++++..+..+.++..    ....|.|.++..+|+|.|+|.|.|..
T Consensus         2 P~f~~~p~~~~-v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   80 (97)
T d1koaa1           2 PRFIVKPYGTE-VGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY   80 (97)
T ss_dssp             CEEEECCCCCE-EETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETT
T ss_pred             CEEEEeCCCEE-EeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECC
Confidence            55566666666 89999999999999999999999999999988766552    22369999999999999999999999


Q ss_pred             CCceeEEEEEEecCc
Q psy14542        298 GQDKMQLFIQYAHGK  312 (371)
Q Consensus       298 g~~~~~~~l~v~~~p  312 (371)
                      |....++.|.|...+
T Consensus        81 G~~~~~~~l~V~~~~   95 (97)
T d1koaa1          81 GTKEEIVFLNVTRHS   95 (97)
T ss_dssp             EEEEEEECCEEECSC
T ss_pred             CEEEEEEEEEEeecC
Confidence            999999999887654

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.68  E-value=9.2e-17  Score=109.70  Aligned_cols=89  Identities=27%  Similarity=0.400  Sum_probs=78.2

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe-----cceEEEeccCCCCCeEEEEEEE
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GSSLSISHVEESDSGVWNCVAN  294 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~a~  294 (371)
                      .+|.+...+.+.. +..|+.+.|.|.+.|.|.|.+.|+++|..+..+.++...     ..+|.|.++..+|+|.|+|.|.
T Consensus         7 ~~P~f~~~~~~~~-v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   85 (102)
T d1fhga_           7 VKPYFTKTILDME-VVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV   85 (102)
T ss_dssp             EEEEEEECCCCEE-EETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCeEEcCCCcEE-EecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEE
Confidence            5677777777777 899999999999999999999999999999888776631     2369999999999999999999


Q ss_pred             cCCCCceeEEEEEEe
Q psy14542        295 NSEGQDKMQLFIQYA  309 (371)
Q Consensus       295 n~~g~~~~~~~l~v~  309 (371)
                      |..|....++.|.|.
T Consensus        86 N~~G~~~~~~~L~V~  100 (102)
T d1fhga_          86 NSLGEATCTAELLVE  100 (102)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             ECCcEEEEEEEEEEE
Confidence            999999999999885

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.67  E-value=1.4e-16  Score=107.92  Aligned_cols=90  Identities=23%  Similarity=0.288  Sum_probs=77.6

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE---ec--ceEEEeccCCCCCeEEEEEEE
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR---IG--SSLSISHVEESDSGVWNCVAN  294 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~---~~--~~l~i~~~~~~d~G~Y~C~a~  294 (371)
                      .+|.+...+.... +..|+.+.|.|.+.|.|.|.+.|++++..+..+.+...   .+  ..|.|.++..+|+|.|+|.|.
T Consensus         3 eaP~f~~~~~~~~-v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   81 (98)
T d1g1ca_           3 EAPKIFERIQSQT-VGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAI   81 (98)
T ss_dssp             EEEEEEECCCCEE-EETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cCCeEecCCCcEE-EcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEE
Confidence            4567776666666 99999999999999999999999999999988766542   22  279999999999999999999


Q ss_pred             cCCCCceeEEEEEEec
Q psy14542        295 NSEGQDKMQLFIQYAH  310 (371)
Q Consensus       295 n~~g~~~~~~~l~v~~  310 (371)
                      |..|....++.|.|..
T Consensus        82 N~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          82 NIAGETSSHAFLLVQA   97 (98)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             ECCcEEEEEEEEEEEE
Confidence            9999999999998875

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.67  E-value=7.3e-17  Score=108.18  Aligned_cols=88  Identities=19%  Similarity=0.242  Sum_probs=75.3

Q ss_pred             ccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE----ecceEEEeccCCCCCeEEEEEEEcC
Q psy14542        221 SAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR----IGSSLSISHVEESDSGVWNCVANNS  296 (371)
Q Consensus       221 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~  296 (371)
                      +|.+...+.... +..|+++.|.|.+.|.|.|.+.|++++..+..+.++..    ....|.|.++..+|+|.|+|.|.|.
T Consensus         2 ~P~i~~~~~~~~-v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~   80 (93)
T d1wiua_           2 KPKILTASRKIK-IKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNE   80 (93)
T ss_dssp             CCEECCCCCEEE-ECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEET
T ss_pred             CCeEEeCCCcEE-EeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEEC
Confidence            455655566666 99999999999999999999999999999888766552    2247999999999999999999999


Q ss_pred             CCCceeEEEEEEe
Q psy14542        297 EGQDKMQLFIQYA  309 (371)
Q Consensus       297 ~g~~~~~~~l~v~  309 (371)
                      .|....++.|.|+
T Consensus        81 ~G~~~~~~~l~V~   93 (93)
T d1wiua_          81 LGEDEAIFEVIVQ   93 (93)
T ss_dssp             TEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEEEC
Confidence            9999999988874

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.65  E-value=9.9e-17  Score=106.96  Aligned_cols=81  Identities=30%  Similarity=0.559  Sum_probs=70.7

Q ss_pred             eeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE----ecceEEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542        228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR----IGSSLSISHVEESDSGVWNCVANNSEGQDKMQ  303 (371)
Q Consensus       228 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  303 (371)
                      +.+.. +.+|+.+.|.|.+.|.|.|.+.|+++|..+..+.++..    ..+.|.|.++..+|+|.|+|.|.|..|....+
T Consensus         6 P~~~~-v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~   84 (91)
T d1tnna_           6 PRSMT-VYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAE   84 (91)
T ss_dssp             CCCEE-CSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEE
T ss_pred             CcCEE-EeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEEE
Confidence            34445 89999999999999999999999999999987766542    33579999999999999999999999999999


Q ss_pred             EEEEEe
Q psy14542        304 LFIQYA  309 (371)
Q Consensus       304 ~~l~v~  309 (371)
                      +.|.|.
T Consensus        85 ~~l~V~   90 (91)
T d1tnna_          85 FTLTIQ   90 (91)
T ss_dssp             EEEECC
T ss_pred             EEEEEE
Confidence            988875

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.65  E-value=3.3e-16  Score=104.28  Aligned_cols=87  Identities=29%  Similarity=0.409  Sum_probs=71.4

Q ss_pred             cccceeee-eeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542        220 LSAAKMFE-KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEG  298 (371)
Q Consensus       220 ~~p~~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  298 (371)
                      ++|.+... +.... +..|+.+.|.|.+.|.|.|.+.|++++......  ....++.|.|.++..+|+|.|+|.|.|..|
T Consensus         3 ~~P~i~~~~p~~~~-~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   79 (91)
T d1cs6a3           3 YAPSIKAKFPADTY-ALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK--WLSSEPLLHIQNVDFEDEGTYECEAENIKG   79 (91)
T ss_dssp             EEEEEEECCCSEEE-EETTCCEEEECEEEEESCCEEEEEECCSCCSCC--CSBSSSEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             cCCeEEeeCCCcEE-EecCCcEEEEEEEEEccCCEEEEEecccccceE--eeeeeeEEEeCCCCccCCEEEEEEEEECCC
Confidence            45555544 45555 899999999999999999999999987654332  233567899999999999999999999999


Q ss_pred             CceeEEEEEEe
Q psy14542        299 QDKMQLFIQYA  309 (371)
Q Consensus       299 ~~~~~~~l~v~  309 (371)
                      .....+.|.|.
T Consensus        80 ~~~~~~~l~V~   90 (91)
T d1cs6a3          80 RDTYQGRIIIH   90 (91)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            99999988885

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.63  E-value=4.6e-16  Score=102.96  Aligned_cols=83  Identities=22%  Similarity=0.432  Sum_probs=71.6

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----CeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----SDEVLVLDRVQREDAGMYQCHVSADDDSA   85 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   85 (371)
                      +|.+...|...+.+.+|+++.|.|.+ .+.|.+.+.|++++..+...    ....|.|.+++.+|+|.|+|.+.|..|..
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~-~g~P~p~v~W~~~~~~i~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~   80 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKV-TGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDK   80 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEE-EEESCCCCEEEETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEE-EEeCCCEEEEEeCCccCccccEEEeeeeEEECCCChhhCEEEEEEEEECCCEE
Confidence            57788888775788999999999954 67888999999999988655    44579999999999999999999999988


Q ss_pred             EEEEEEEE
Q psy14542         86 QMSAQVIL   93 (371)
Q Consensus        86 ~~~~~l~v   93 (371)
                      ...+.|.|
T Consensus        81 ~~~~~l~V   88 (89)
T d1biha4          81 YFETLVQV   88 (89)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            88888876

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=6.7e-16  Score=104.95  Aligned_cols=90  Identities=24%  Similarity=0.469  Sum_probs=70.8

Q ss_pred             ccceeeeeeeee-eeecCCeEEEEEEeecCCCCceEEEeCCcccccCCce----E--EecceEEEeccCCCCCeEEEEEE
Q psy14542        221 SAAKMFEKHRIL-NVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI----Q--RIGSSLSISHVEESDSGVWNCVA  293 (371)
Q Consensus       221 ~p~~~~~~~~~~-~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~----~--~~~~~l~i~~~~~~d~G~Y~C~a  293 (371)
                      ||.+...+.... .+..|+.+.|.|.+.|.|.|.+.|+++|..+......    .  ...+.|.|.++..+|+|.|+|.|
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIA   82 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEE
Confidence            455554333221 2678999999999999999999999999987654321    1  23468999999999999999999


Q ss_pred             EcCCCCceeEEEEEEec
Q psy14542        294 NNSEGQDKMQLFIQYAH  310 (371)
Q Consensus       294 ~n~~g~~~~~~~l~v~~  310 (371)
                      .|..|.....+.|.|..
T Consensus        83 ~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          83 ENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCCEEEEEEEEEEEE
Confidence            99999999999998864

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=8.6e-16  Score=100.41  Aligned_cols=74  Identities=19%  Similarity=0.304  Sum_probs=65.7

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      +.+|++++|.|.+.|.|.|.+.|++++..+.      ..+..|.|.++..+|+|.|+|.|.|..|.....+.|.|...|+
T Consensus        11 v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~------~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~~~~k   84 (84)
T d2nxyb2          11 LLQGQSLTLTLESPPGSSPSVQCRSPRGKNI------QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK   84 (84)
T ss_dssp             EETTCCEEEEEECCTTCCCEEEEECTTCCEE------EESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECEECCCC
T ss_pred             EECCCeEEEEEEeEcCCchheEEEeecccce------eeeeeeeeeecccccccEEEEEEEeCCCEEEEEEEEEEEecCC
Confidence            8999999999999999999999999765443      3456899999999999999999999999999999999887653

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=8.2e-16  Score=102.16  Aligned_cols=85  Identities=19%  Similarity=0.236  Sum_probs=70.8

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----CeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----SDEVLVLDRVQREDAGMYQCHVSADDDSA   85 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   85 (371)
                      |+.+.+.+.....+.+|+++.|.|.+..+.|.+.+.|+|++..+...    .++.|.|.+++.+|+|.|+|.|.|..|..
T Consensus         1 P~~v~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~   80 (89)
T d1gl4b_           1 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMD   80 (89)
T ss_dssp             CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred             CCEEEEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccEeeceEEEEecCCcccCEEEEEEEEECCCEE
Confidence            35566665555889999999999977667888999999987665443    56689999999999999999999999988


Q ss_pred             EEEEEEEEe
Q psy14542         86 QMSAQVILG   94 (371)
Q Consensus        86 ~~~~~l~v~   94 (371)
                      ...+.|.|.
T Consensus        81 ~~~~~l~V~   89 (89)
T d1gl4b_          81 QGTATLHVQ   89 (89)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEC
Confidence            888888773

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=4.1e-15  Score=98.69  Aligned_cols=75  Identities=23%  Similarity=0.376  Sum_probs=66.1

Q ss_pred             eecCCeEEEEEEee-cCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542        234 VKKDESVILPCSAQ-GNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA  309 (371)
Q Consensus       234 ~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  309 (371)
                      +.+|+++.|.|.+. +.|.+.+.|++++..+.... ....++.|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus        14 v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~   89 (89)
T d1gl4b_          14 VRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR-AMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ   89 (89)
T ss_dssp             ECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT-EEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             EeCCCcEEEEEEccCCCCCCEEEEecCCceeeccc-cEeeceEEEEecCCcccCEEEEEEEEECCCEEEEEEEEEEC
Confidence            89999999999997 57889999999988776553 44567899999999999999999999999999999888874

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.61  E-value=1.2e-15  Score=100.92  Aligned_cols=82  Identities=24%  Similarity=0.404  Sum_probs=72.1

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHVSADDDSA   85 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   85 (371)
                      |.+...|.+ ..+.+|+++.|.|.+ .+.|.+.+.|+|||..+...     ....|.|.+++.+|+|.|+|.+.|..|..
T Consensus         2 P~f~~~~~~-~~v~~G~~~~l~C~~-~g~P~p~v~W~k~g~~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~   79 (89)
T d1cs6a4           2 PDWLDVITD-TEADIGSDLRWSCVA-SGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTV   79 (89)
T ss_dssp             EEEEECCCC-EEEETTCCEEEECEE-EEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             CCeEEECCC-EEECCCCcEEEEEEE-EEEcCCEEEEEEeeccccccceeeeeeeeEEEEeecccCCEEEEEEEEeCCCEE
Confidence            667777887 899999999999955 57888999999999988765     45689999999999999999999999988


Q ss_pred             EEEEEEEEe
Q psy14542         86 QMSAQVILG   94 (371)
Q Consensus        86 ~~~~~l~v~   94 (371)
                      ...+.|.|.
T Consensus        80 ~~~~~l~V~   88 (89)
T d1cs6a4          80 YASAELTVQ   88 (89)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            888888875

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.61  E-value=1.3e-15  Score=102.83  Aligned_cols=83  Identities=20%  Similarity=0.336  Sum_probs=73.1

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEc
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSA   80 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~   80 (371)
                      .|++...|.. ..+.+|+++.|.|. ..+.|.+.+.|++++..+...         ....|.|.+++.+|+|.|+|.|.|
T Consensus         1 ~P~f~~~p~~-~~v~~G~~~~l~C~-~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   78 (97)
T d1koaa1           1 QPRFIVKPYG-TEVGEGQSANFYCR-VIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKN   78 (97)
T ss_dssp             SCEEEECCCC-CEEETTSCEEEEEE-EECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEE
T ss_pred             CCEEEEeCCC-EEEeCCCcEEEEEE-EEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEE
Confidence            3778888888 89999999999995 457788999999999988665         556899999999999999999999


Q ss_pred             CCCCeEEEEEEEEe
Q psy14542         81 DDDSAQMSAQVILG   94 (371)
Q Consensus        81 ~~~~~~~~~~l~v~   94 (371)
                      ..|.....+.|.|.
T Consensus        79 ~~G~~~~~~~l~V~   92 (97)
T d1koaa1          79 SYGTKEEIVFLNVT   92 (97)
T ss_dssp             TTEEEEEEECCEEE
T ss_pred             CCCEEEEEEEEEEe
Confidence            99988888888887

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2e-15  Score=100.21  Aligned_cols=83  Identities=17%  Similarity=0.300  Sum_probs=69.7

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQCHVSADDDS   84 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   84 (371)
                      ++|.+.|...+.+.+|+++.|.|.+ .+.|.+.+.|++++..+...      ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 f~i~i~P~~~~~~~~G~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~   79 (90)
T d1vcaa2           1 FKIETTPESRYLAQIGDSVSLTCST-TGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRK   79 (90)
T ss_dssp             CEEEEESSSEEEEETTSCEEEEEEE-ESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEE
T ss_pred             CEEEEECCCcEEEECCCEEEEEEec-cCCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeCCCE
Confidence            3567778775777899999999955 68899999999976544322      6778999999999999999999999999


Q ss_pred             eEEEEEEEEe
Q psy14542         85 AQMSAQVILG   94 (371)
Q Consensus        85 ~~~~~~l~v~   94 (371)
                      .+..+.|.|+
T Consensus        80 ~~~~~~v~V~   89 (90)
T d1vcaa2          80 LEKGIQVEIY   89 (90)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            8999999886

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.8e-15  Score=99.50  Aligned_cols=76  Identities=18%  Similarity=0.270  Sum_probs=65.1

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA  309 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  309 (371)
                      +..|+.+.|.|.+.|.|.|.+.|++++..+..+.... ...+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus        13 ~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V~   89 (90)
T d1vcaa2          13 AQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY   89 (90)
T ss_dssp             EETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EECCCEEEEEEeccCCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEEE
Confidence            6789999999999999999999999887665443222 234579999999999999999999999999999998875

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.59  E-value=7.8e-16  Score=103.80  Aligned_cols=75  Identities=31%  Similarity=0.557  Sum_probs=66.3

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceE-----EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ-----RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      +..|+.+.|.|.+.|+|.|.+.|++||..+....+..     ...++|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus        17 v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   96 (97)
T d3dara1          17 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV   96 (97)
T ss_dssp             ECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEEEE
Confidence            7899999999999999999999999999887654332     23468999999999999999999999999999988887

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3e-15  Score=97.67  Aligned_cols=82  Identities=21%  Similarity=0.371  Sum_probs=65.6

Q ss_pred             cceeeeeeeeeeeecCCeEEEEEEeecCCCC-ceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        222 AAKMFEKHRILNVKKDESVILPCSAQGNPLP-TIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       222 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      |.|...+.+.. +..|+++.|.|.+.|.|.| +|+|++||..+....     .+.+.|.....+|+|.|+|.|.|..|..
T Consensus         2 P~f~~~P~~~~-v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~-----~~~~~l~~~~~~d~G~Y~C~A~N~~G~~   75 (85)
T d1rhfa2           2 PFFTVEPKDLA-VPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA-----PSPSVLNVTGVTQSTMFSCEAHNLKGLA   75 (85)
T ss_dssp             CEEEECCCCEE-ECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE-----ESSEEEEECCCSSCEEEEEEEEETTEEE
T ss_pred             CcEEEeCCcEE-EcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC-----CcceEEecCCccccEEEEEEEEcCCCcE
Confidence            45566666666 9999999999999999987 899999999886553     2446667777789999999999999964


Q ss_pred             -eeEEEEEEe
Q psy14542        301 -KMQLFIQYA  309 (371)
Q Consensus       301 -~~~~~l~v~  309 (371)
                       +..+.|.|+
T Consensus        76 ~S~~~~v~Vk   85 (85)
T d1rhfa2          76 SSRTATVHLQ   85 (85)
T ss_dssp             ECCCEEEEEC
T ss_pred             EEEEEEEEEC
Confidence             456777663

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.5e-15  Score=99.25  Aligned_cols=78  Identities=22%  Similarity=0.310  Sum_probs=64.7

Q ss_pred             CCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEe----eCCeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEE
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR----RNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI   92 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~----~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~   92 (371)
                      |...+.+.+|+++.|.|.+..+.|.+.|.|++++..+.    ....+.|.|.+++.+|+|.|+|.|.|..+..+.++.|.
T Consensus         9 p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~l~   88 (90)
T d1gsma1           9 PEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLL   88 (90)
T ss_dssp             CCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeeeeeccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEEEEEE
Confidence            33337888999999999776788899999999655332    12678899999999999999999999988888888888


Q ss_pred             Ee
Q psy14542         93 LG   94 (371)
Q Consensus        93 v~   94 (371)
                      |+
T Consensus        89 Vy   90 (90)
T d1gsma1          89 VY   90 (90)
T ss_dssp             EE
T ss_pred             EC
Confidence            75

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=2e-15  Score=100.58  Aligned_cols=86  Identities=17%  Similarity=0.197  Sum_probs=69.7

Q ss_pred             ceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCc--eE-EecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        223 AKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDR--IQ-RIGSSLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       223 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~--~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      .|...+.... +.+|+.+.|.|.+.|.|.|.+.|++++..+....+  +. ..+++|.|.++..+|+|.|+|.|.|..+.
T Consensus         3 ~F~~~P~~~~-v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~   81 (92)
T d1epfa2           3 MFKNAPTPQE-FKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG   81 (92)
T ss_dssp             EEEECCSSEE-CCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGT
T ss_pred             EEEEcCCCEE-EeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcCC
Confidence            3444455555 99999999999999999999999999987766543  22 34568999999999999999999998888


Q ss_pred             ceeEEEEEEe
Q psy14542        300 DKMQLFIQYA  309 (371)
Q Consensus       300 ~~~~~~l~v~  309 (371)
                      ......|.|.
T Consensus        82 ~~~~~~i~Vi   91 (92)
T d1epfa2          82 EINFKDIQVI   91 (92)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            7766666664

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3e-15  Score=97.80  Aligned_cols=79  Identities=13%  Similarity=0.225  Sum_probs=67.4

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEE
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV   91 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   91 (371)
                      ++++.|.  ..+.+|++++|.| ...+.|.+.+.|++++..+.. ....|.|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus         2 ~it~~~~--~~v~~G~~~~L~C-~~~g~p~P~i~W~~~~~~~~~-~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v   77 (84)
T d2nxyb2           2 GLTANSD--THLLQGQSLTLTL-ESPPGSSPSVQCRSPRGKNIQ-GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI   77 (84)
T ss_dssp             EEEESCS--SCEETTCCEEEEE-ECCTTCCCEEEEECTTCCEEE-ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             eEcCCCC--eEEECCCeEEEEE-EeEcCCchheEEEeeccccee-eeeeeeeeecccccccEEEEEEEeCCCEEEEEEEE
Confidence            4555554  4789999999999 567889999999998776554 56789999999999999999999999988888888


Q ss_pred             EEe
Q psy14542         92 ILG   94 (371)
Q Consensus        92 ~v~   94 (371)
                      .|.
T Consensus        78 ~V~   80 (84)
T d2nxyb2          78 VVL   80 (84)
T ss_dssp             CEE
T ss_pred             EEE
Confidence            887

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.58  E-value=5.8e-15  Score=100.58  Aligned_cols=83  Identities=17%  Similarity=0.302  Sum_probs=73.0

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEEEEEE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQCHVS   79 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~~   79 (371)
                      +|.+...|.. ..+.+|+++.|.|.+ .+.|.+.+.|++||..+...          ...+|.|.+++.+|+|.|+|.+.
T Consensus         8 ~P~f~~~~~~-~~v~~G~~~~l~C~~-~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   85 (102)
T d1fhga_           8 KPYFTKTILD-MEVVEGSAARFDCKV-EGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV   85 (102)
T ss_dssp             EEEEEECCCC-EEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCeEEcCCCc-EEEecCCcEEEEEEE-EeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEE
Confidence            5777777777 999999999999965 56788999999999888765          46789999999999999999999


Q ss_pred             cCCCCeEEEEEEEEe
Q psy14542         80 ADDDSAQMSAQVILG   94 (371)
Q Consensus        80 ~~~~~~~~~~~l~v~   94 (371)
                      |..|....++.|.|.
T Consensus        86 N~~G~~~~~~~L~V~  100 (102)
T d1fhga_          86 NSLGEATCTAELLVE  100 (102)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             ECCcEEEEEEEEEEE
Confidence            999998888888886

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5.4e-15  Score=100.62  Aligned_cols=79  Identities=22%  Similarity=0.421  Sum_probs=68.7

Q ss_pred             ecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE---------ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEE
Q psy14542        235 KKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR---------IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLF  305 (371)
Q Consensus       235 ~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  305 (371)
                      ..+....|.|.+.|+|.|.+.|+++|..+..+.+...         ..+.|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus        14 ~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   93 (103)
T d1wwbx_          14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             ccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEE
Confidence            4567788999999999999999999999987655431         1246999999999999999999999999999999


Q ss_pred             EEEecCcc
Q psy14542        306 IQYAHGKY  313 (371)
Q Consensus       306 l~v~~~p~  313 (371)
                      |.|.++|.
T Consensus        94 v~V~~~P~  101 (103)
T d1wwbx_          94 AHFMGWPG  101 (103)
T ss_dssp             ECCSCCCC
T ss_pred             EEEEeCCC
Confidence            99988886

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.58  E-value=4.7e-15  Score=97.73  Aligned_cols=81  Identities=12%  Similarity=0.227  Sum_probs=64.9

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-CeeEEEEccCCcCCCeEEEEEEEcCCCCe-EEEEE
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-SDEVLVLDRVQREDAGMYQCHVSADDDSA-QMSAQ   90 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~   90 (371)
                      +.+.++. ..+.+|++++|.|....+.|.+.+.|||||..+... ....|.|.+++.+|+|.|.|.+.|..+.. +..+.
T Consensus         5 Lilq~p~-~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~   83 (89)
T d1fnla2           5 LLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVN   83 (89)
T ss_dssp             EEEECSC-SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             EEEECCC-CeEccCCeEEEEEEecCCCCCcEEEEEEcccccceeccccccEECccceeccceEEEEEEeCCCCeEEeeEE
Confidence            3444555 578999999999976667777889999999987654 55689999999999999999999877654 35577


Q ss_pred             EEEe
Q psy14542         91 VILG   94 (371)
Q Consensus        91 l~v~   94 (371)
                      |+|.
T Consensus        84 itV~   87 (89)
T d1fnla2          84 ITIT   87 (89)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7776

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.57  E-value=7.3e-15  Score=99.26  Aligned_cols=83  Identities=18%  Similarity=0.217  Sum_probs=72.5

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEEEEEE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQCHVS   79 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~~   79 (371)
                      +|.|...+.. ..+.+|+.+.|.|.+ .+.|.+.+.|++|+..+...          +..+|.|.+++.+|+|.|+|.+.
T Consensus         4 aP~f~~~~~~-~~v~~g~~v~l~c~v-~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   81 (98)
T d1g1ca_           4 APKIFERIQS-QTVGQGSDAHFRVRV-VGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAI   81 (98)
T ss_dssp             EEEEEECCCC-EEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCeEecCCCc-EEEcCCCcEEEEEEE-EEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEE
Confidence            5677777777 899999999999965 57788999999999888655          44589999999999999999999


Q ss_pred             cCCCCeEEEEEEEEe
Q psy14542         80 ADDDSAQMSAQVILG   94 (371)
Q Consensus        80 ~~~~~~~~~~~l~v~   94 (371)
                      |..|.......|.|.
T Consensus        82 N~~G~~~~~~~L~V~   96 (98)
T d1g1ca_          82 NIAGETSSHAFLLVQ   96 (98)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             ECCcEEEEEEEEEEE
Confidence            999998888888886

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=6.2e-15  Score=97.28  Aligned_cols=75  Identities=16%  Similarity=0.217  Sum_probs=62.9

Q ss_pred             eecCCeEEEEEEee-cCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542        234 VKKDESVILPCSAQ-GNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA  309 (371)
Q Consensus       234 ~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  309 (371)
                      +..|+++.|.|.+. |.|.++|.|++++.++... ......+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus        15 ~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~l~Vy   90 (90)
T d1gsma1          15 VALGASRQLTCRLACADRGASVQWRGLDTSLGAV-QSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVY   90 (90)
T ss_dssp             EETTCCEEEEEEECCSSTTCEEEEESSTTTTCCE-EEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEeCCcEEEEEEecCCCCccEEEEEEeeeeeeee-eccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEEEEEEEC
Confidence            88999999999885 7889999999988776321 122334689999999999999999999999999999888773

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=6.6e-15  Score=98.07  Aligned_cols=80  Identities=25%  Similarity=0.461  Sum_probs=66.9

Q ss_pred             eeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE------ecceEEEeccCCCCCeEEEEEEEcCCCCc-e
Q psy14542        229 HRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR------IGSSLSISHVEESDSGVWNCVANNSEGQD-K  301 (371)
Q Consensus       229 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~  301 (371)
                      .... +.+|+.+.|.|.+.|.|.|.+.|++++..+....+...      ....|.|.++..+|+|.|+|.|.|..|.. +
T Consensus         4 ~~~~-v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S   82 (91)
T d1rhfa1           4 VKLT-VSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS   82 (91)
T ss_dssp             EEEE-EETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEEC
T ss_pred             eeEE-EcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEE
Confidence            3444 89999999999999999999999999999877655431      22469999999999999999999999985 5


Q ss_pred             eEEEEEEe
Q psy14542        302 MQLFIQYA  309 (371)
Q Consensus       302 ~~~~l~v~  309 (371)
                      ..+.|.|.
T Consensus        83 ~~~~l~V~   90 (91)
T d1rhfa1          83 QPVWLTVE   90 (91)
T ss_dssp             CCEEEEEE
T ss_pred             EEEEEEEE
Confidence            67888774

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=5.5e-15  Score=101.23  Aligned_cols=90  Identities=17%  Similarity=0.295  Sum_probs=71.3

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE--------ecceEEEeccCCCCCeEEEE
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR--------IGSSLSISHVEESDSGVWNC  291 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C  291 (371)
                      .||.+.....    ...+....|.|.+.|+|.|.+.|+++|..+..+.+...        ..+.|.|.++..+|+|.|+|
T Consensus         4 ~PP~i~~~~~----~~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   79 (105)
T d1wwca_           4 YPPRVVSLEE----PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTL   79 (105)
T ss_dssp             CCCCCCCCCC----CCCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEE
T ss_pred             cCCeeEEeCC----CEEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEE
Confidence            5566543222    23345567888999999999999999999887765431        22469999999999999999


Q ss_pred             EEEcCCCCceeEEEEEEecCcc
Q psy14542        292 VANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       292 ~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      .|.|..|..+.++.|.|.++|.
T Consensus        80 ~a~N~~G~~~~~~~v~V~~~P~  101 (105)
T d1wwca_          80 IAKNPLGTANQTINGHFLKEPF  101 (105)
T ss_dssp             EEEETTEEEEEEEEECCSCCCC
T ss_pred             EEEcCCCEEEEEEEEEEEeCCC
Confidence            9999999999999999987765

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.57  E-value=6.4e-15  Score=96.92  Aligned_cols=79  Identities=13%  Similarity=0.243  Sum_probs=64.4

Q ss_pred             EeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-CeeEEEEccCCcCCCeEEEEEEEcCCCCe-EEEEEEE
Q psy14542         15 MSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-SDEVLVLDRVQREDAGMYQCHVSADDDSA-QMSAQVI   92 (371)
Q Consensus        15 ~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~   92 (371)
                      +.++. ..+.+|++++|.|.+..+.|.+.+.|||||..+... ....|.|.+++.+|+|.|.|.+.|..+.. +..+.|.
T Consensus         5 lq~p~-~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~   83 (88)
T d2fcba2           5 LQTPH-LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTIT   83 (88)
T ss_dssp             EECSC-SEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEESSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             EeCCC-CeEecCCeEEEEEEecCCCCCcEEEEEeecccccccccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEE
Confidence            34444 578999999999976666777889999999988654 56789999999999999999999977654 3557777


Q ss_pred             Ee
Q psy14542         93 LG   94 (371)
Q Consensus        93 v~   94 (371)
                      |.
T Consensus        84 V~   85 (88)
T d2fcba2          84 VQ   85 (88)
T ss_dssp             EC
T ss_pred             Ee
Confidence            76

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.57  E-value=3.1e-15  Score=99.50  Aligned_cols=84  Identities=19%  Similarity=0.283  Sum_probs=68.8

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---CeeEEEEccCCcCCCeEEEEEEEcCCCCeE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---SDEVLVLDRVQREDAGMYQCHVSADDDSAQ   86 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   86 (371)
                      +|.+....+....+.+|++++|.|.+ .+.|.+.+.|+|++......   .+..|.|.+++.+|+|.|+|.|.|..|...
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~-~g~P~p~i~W~k~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   82 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFA-FGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDT   82 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEE-EEESCCEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEE-EEccCCEEEEEecccccceEeeeeeeEEEeCCCCccCCEEEEEEEEECCCEEE
Confidence            45666654333899999999999965 57788999999976544332   667899999999999999999999999888


Q ss_pred             EEEEEEEe
Q psy14542         87 MSAQVILG   94 (371)
Q Consensus        87 ~~~~l~v~   94 (371)
                      ..+.|.|.
T Consensus        83 ~~~~l~V~   90 (91)
T d1cs6a3          83 YQGRIIIH   90 (91)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            88888875

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7.3e-16  Score=102.89  Aligned_cols=86  Identities=15%  Similarity=0.241  Sum_probs=71.1

Q ss_pred             cceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceE--EecceEEEeccCCCCCe-EEEEEEEcCCC
Q psy14542        222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ--RIGSSLSISHVEESDSG-VWNCVANNSEG  298 (371)
Q Consensus       222 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G-~Y~C~a~n~~g  298 (371)
                      |.+...+.... +.+|+.+.|.|.+.|.|.|.+.|++++..+....+..  .....|.|.++..+|.| .|+|.|.|..|
T Consensus         3 P~i~~~~~~~~-v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G   81 (92)
T d2ifga1           3 PTLKVQVPNAS-VDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVG   81 (92)
T ss_dssp             CEEEEECCSSC-CBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTE
T ss_pred             CEEEEeCCCEE-EeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcCCC
Confidence            55666666666 9999999999999999999999999998776543322  23357999999999999 69999999999


Q ss_pred             CceeEEEEEE
Q psy14542        299 QDKMQLFIQY  308 (371)
Q Consensus       299 ~~~~~~~l~v  308 (371)
                      ....++.|.|
T Consensus        82 ~~~~s~~l~V   91 (92)
T d2ifga1          82 RAEVSVQVNV   91 (92)
T ss_dssp             ECCEEECCCC
T ss_pred             EEEEEEEEEE
Confidence            9988887765

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.56  E-value=1.3e-14  Score=97.73  Aligned_cols=79  Identities=20%  Similarity=0.386  Sum_probs=65.4

Q ss_pred             eeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCce--E----EecceEEEeccCCCCCeEEEEEEEcCCCCc-e
Q psy14542        229 HRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI--Q----RIGSSLSISHVEESDSGVWNCVANNSEGQD-K  301 (371)
Q Consensus       229 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~--~----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~  301 (371)
                      .+.. +..|+++.|.|.+.|.|.+.+.|+++|..+......  .    ....+|.|.++..+|+|.|+|.|.|..|.. +
T Consensus        11 ~~~~-~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   89 (97)
T d1biha3          11 KDMM-AKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK   89 (97)
T ss_dssp             CSEE-EETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEE
T ss_pred             CCEE-EecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEE
Confidence            3444 899999999999999999999999999988654332  2    223579999999999999999999999985 4


Q ss_pred             eEEEEEE
Q psy14542        302 MQLFIQY  308 (371)
Q Consensus       302 ~~~~l~v  308 (371)
                      .++.|.|
T Consensus        90 ~s~~L~V   96 (97)
T d1biha3          90 HSLKLTV   96 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5777876

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=8.6e-15  Score=99.44  Aligned_cols=82  Identities=20%  Similarity=0.253  Sum_probs=70.0

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADD   82 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~   82 (371)
                      .+...|.. ..+.+|+++.|.|.+ .+.|.+.+.|+|++..+...         ...+|.|.+++.+|+|.|+|.+.|..
T Consensus         2 ~~~~~p~~-~~v~~G~~~~l~C~v-~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   79 (101)
T d2cqva1           2 QIIQFPED-QKVRAGESVELFGKV-TGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKL   79 (101)
T ss_dssp             EESCCCCS-EEEETTCCEEEEEEE-ESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSS
T ss_pred             eEEeeCCc-EEEeCCCcEEEEEEE-EecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECC
Confidence            44455666 899999999999965 57788899999998877554         55689999999999999999999999


Q ss_pred             CCeEEEEEEEEec
Q psy14542         83 DSAQMSAQVILGG   95 (371)
Q Consensus        83 ~~~~~~~~l~v~~   95 (371)
                      |.....+.|.|.+
T Consensus        80 G~~~~~~~l~V~~   92 (101)
T d2cqva1          80 GSRQAQVNLTVVD   92 (101)
T ss_dssp             CEEECCEEEEEEC
T ss_pred             CEEEEEEEEEEEe
Confidence            9998889999883

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.1e-15  Score=99.11  Aligned_cols=72  Identities=19%  Similarity=0.272  Sum_probs=61.5

Q ss_pred             eeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542        230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA  309 (371)
Q Consensus       230 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  309 (371)
                      ... +.+|+.+.|.|.+.|.|.|.+.|++++..+....         .+..++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus        13 ~~~-~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~---------~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~   82 (84)
T d2oz4a3          13 NWT-WPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG---------ESVTVTRDLEGTYLCRARSTQGEVTREVTVNVL   82 (84)
T ss_dssp             EEE-EETTCEECCCCCCEEESCCEEEEEETTTEECCTT---------SCEECCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cEE-EeCCCEEEEEEEEeEcCccEEEEEEeeccceeee---------eeeccccCCCCEEEEEEEcCCCEEEEEEEEEEE
Confidence            344 8899999999999999999999999988765543         234678899999999999999999999999886


Q ss_pred             cC
Q psy14542        310 HG  311 (371)
Q Consensus       310 ~~  311 (371)
                      .|
T Consensus        83 ~P   84 (84)
T d2oz4a3          83 SP   84 (84)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=3.6e-14  Score=95.57  Aligned_cols=82  Identities=24%  Similarity=0.485  Sum_probs=65.2

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe-CCEEEeeC-----------CeeEEEEccCCcCCCeEEEEEEE
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRN-----------SDEVLVLDRVQREDAGMYQCHVS   79 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~-~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~~   79 (371)
                      +|.+.|.. ..+.+|+++.|.|.+....+.+.+.|++ ++..+...           ...+|.|.+++.+|+|.|+|.|.
T Consensus         2 ~V~i~P~~-~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   80 (97)
T d1epfa1           2 QVDIVPSQ-GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVT   80 (97)
T ss_dssp             CEEEESSS-EEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEEEECCC-EEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEE
Confidence            56777888 8999999999999665443457899999 45544332           45789999999999999999999


Q ss_pred             cCCCCe-EEEEEEEEe
Q psy14542         80 ADDDSA-QMSAQVILG   94 (371)
Q Consensus        80 ~~~~~~-~~~~~l~v~   94 (371)
                      |..|.. +.++.|.|+
T Consensus        81 N~~G~~~~~tv~l~V~   96 (97)
T d1epfa1          81 AEDGTQSEATVNVKIF   96 (97)
T ss_dssp             ETTTEEEEEEEEEEEE
T ss_pred             eCCCcEEEEEEEEEEE
Confidence            988864 467888776

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.54  E-value=3.9e-15  Score=99.56  Aligned_cols=83  Identities=14%  Similarity=0.197  Sum_probs=70.6

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEc
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSA   80 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~   80 (371)
                      +|.+...+.. +.+.+|+++.|.|.+ .+.|.+.+.|++++..+...         ....|.|.+++.+|+|.|+|.|.|
T Consensus         2 ~P~i~~~~~~-~~v~~G~~~~l~c~~-~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N   79 (93)
T d1wiua_           2 KPKILTASRK-IKIKAGFTHNLEVDF-IGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKN   79 (93)
T ss_dssp             CCEECCCCCE-EEECSSBCCEEEEEE-ECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEE
T ss_pred             CCeEEeCCCc-EEEeCCCeEEEEEEE-EEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEE
Confidence            4566655555 999999999999965 57889999999998776654         567899999999999999999999


Q ss_pred             CCCCeEEEEEEEEe
Q psy14542         81 DDDSAQMSAQVILG   94 (371)
Q Consensus        81 ~~~~~~~~~~l~v~   94 (371)
                      ..|..+..+.|.|.
T Consensus        80 ~~G~~~~~~~l~V~   93 (93)
T d1wiua_          80 ELGEDEAIFEVIVQ   93 (93)
T ss_dssp             TTEEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEEEC
Confidence            99998888888873

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=9e-15  Score=98.37  Aligned_cols=78  Identities=21%  Similarity=0.371  Sum_probs=67.6

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE--ecceEEEeccCCCCCeEEEEEEEcCCCCce-eEEEEEEec
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR--IGSSLSISHVEESDSGVWNCVANNSEGQDK-MQLFIQYAH  310 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~  310 (371)
                      +.+|+++.|+|.+.+ +.+.+.|++++..+..+.+...  ..++|.|.++..+|.|.|+|.|.|..|... ..+.|.|..
T Consensus        15 v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V~~   93 (96)
T d1l6za2          15 VKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIF   93 (96)
T ss_dssp             ECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEEECC
T ss_pred             EeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEEEEc
Confidence            889999999999865 5679999999999988777664  345899999999999999999999999864 568999988


Q ss_pred             Cc
Q psy14542        311 GK  312 (371)
Q Consensus       311 ~p  312 (371)
                      +|
T Consensus        94 ~P   95 (96)
T d1l6za2          94 DP   95 (96)
T ss_dssp             SC
T ss_pred             CC
Confidence            77

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.1e-14  Score=95.02  Aligned_cols=81  Identities=16%  Similarity=0.242  Sum_probs=65.6

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCCCC-eeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCe-EEE
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSS-AKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSA-QMS   88 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~   88 (371)
                      |.+...|.+ ..+.+|+++.|.|.+ .+.|.+ +|+|+|||..+.......+.|.....+|+|.|+|.|.|..|.. +..
T Consensus         2 P~f~~~P~~-~~v~~G~~~~l~C~~-~g~P~P~~i~W~k~g~~i~~~~~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~   79 (85)
T d1rhfa2           2 PFFTVEPKD-LAVPPNAPFQLSCEA-VGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSRT   79 (85)
T ss_dssp             CEEEECCCC-EEECTTCCEEEEEEE-ECSSSCCEEEEEETTEECSCSEESSEEEEECCCSSCEEEEEEEEETTEEEECCC
T ss_pred             CcEEEeCCc-EEEcCCCEEEEEEEE-ecCCcceEEEEEECCEECCCCCCcceEEecCCccccEEEEEEEEcCCCcEEEEE
Confidence            678888888 999999999999965 567776 8999999999877644556677777889999999999998854 345


Q ss_pred             EEEEE
Q psy14542         89 AQVIL   93 (371)
Q Consensus        89 ~~l~v   93 (371)
                      +.|.|
T Consensus        80 ~~v~V   84 (85)
T d1rhfa2          80 ATVHL   84 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66655

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.53  E-value=2.3e-15  Score=100.17  Aligned_cols=79  Identities=19%  Similarity=0.366  Sum_probs=68.0

Q ss_pred             EEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542         14 EMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDS   84 (371)
Q Consensus        14 ~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   84 (371)
                      ...|.. +.+.+|+++.|.|. ..+.|.+.+.|+++|..+...         ...+|.|.+++.+|+|.|+|.+.|..|.
T Consensus         3 i~~P~~-~~v~~G~~~~l~C~-~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~   80 (91)
T d1tnna_           3 LTKPRS-MTVYEGESARFSCD-TDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGK   80 (91)
T ss_dssp             SBCCCC-EECSSSSCCCEEEE-CCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCB
T ss_pred             EeCCcC-EEEeCCCcEEEEEE-EEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCE
Confidence            345666 89999999999995 567888999999988766544         6788999999999999999999999999


Q ss_pred             eEEEEEEEEe
Q psy14542         85 AQMSAQVILG   94 (371)
Q Consensus        85 ~~~~~~l~v~   94 (371)
                      ....+.|.|.
T Consensus        81 ~~~~~~l~V~   90 (91)
T d1tnna_          81 QEAEFTLTIQ   90 (91)
T ss_dssp             CCEEEEEECC
T ss_pred             EEEEEEEEEE
Confidence            8888888875

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.53  E-value=1.2e-14  Score=95.09  Aligned_cols=83  Identities=16%  Similarity=0.303  Sum_probs=66.4

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCeEE
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQM   87 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~   87 (371)
                      +++|.+.+.|+. ..+.+|++++|.|.+....+...+.|++||..+.. ....|.|.+++.+|+|.|+|.+.+..+++  
T Consensus         2 Ppkp~i~~~P~~-~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~-~~~~l~i~~v~~~dsG~Y~C~a~ns~~S~--   77 (85)
T d2fcba1           2 PPKAVLKLEPQW-INVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPT-HTQPSYRFKANNNDSGEYTCQTGQTSLSD--   77 (85)
T ss_dssp             CCBCEEEEESCC-SEEETTCEEEEEEECSSCCCTTCCEEEETTEECTT-CCSSEEEEECCGGGCEEEEEECTTSBCCC--
T ss_pred             CCCCEEEECCCC-eEEcCCCeEEEEEEEeeccceeEEEeecccccccc-cccceEEeeccccCCcEEEEECCCCcccc--
Confidence            467889999988 88999999999997655444557999999998875 56679999999999999999998765444  


Q ss_pred             EEEEEEe
Q psy14542         88 SAQVILG   94 (371)
Q Consensus        88 ~~~l~v~   94 (371)
                      .+.|.|.
T Consensus        78 ~v~l~V~   84 (85)
T d2fcba1          78 PVHLTVL   84 (85)
T ss_dssp             CEEEEEE
T ss_pred             cEEEEEE
Confidence            3455543

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=9.6e-15  Score=96.28  Aligned_cols=79  Identities=19%  Similarity=0.207  Sum_probs=64.2

Q ss_pred             EeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-CeeEEEEccCCcCCCeEEEEEEEcCCCCe-EEEEEEE
Q psy14542         15 MSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-SDEVLVLDRVQREDAGMYQCHVSADDDSA-QMSAQVI   92 (371)
Q Consensus        15 ~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~   92 (371)
                      +.++. ..+.+|++++|.|....+.+...+.|||||..+... ....|.|.+++.+|+|.|.|.+.|..+.. +..+.|+
T Consensus         5 lq~p~-~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~   83 (89)
T d1f2qa2           5 LQASA-EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNIT   83 (89)
T ss_dssp             EEESC-SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             EeCCc-CeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccccccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEE
Confidence            34444 578999999999977666677789999999988654 56789999999999999999999876543 4567788


Q ss_pred             Ee
Q psy14542         93 LG   94 (371)
Q Consensus        93 v~   94 (371)
                      |.
T Consensus        84 V~   85 (89)
T d1f2qa2          84 VI   85 (89)
T ss_dssp             EE
T ss_pred             EE
Confidence            77

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.53  E-value=9.5e-15  Score=97.94  Aligned_cols=85  Identities=18%  Similarity=0.315  Sum_probs=67.6

Q ss_pred             ccceeeeeeeeeeeecCCeEEEEEEeecCCCC-ceEEEeCCcccccCCceE---EecceEEEeccCCCCCeEEEEEEEcC
Q psy14542        221 SAAKMFEKHRILNVKKDESVILPCSAQGNPLP-TIKWYKQDSPVEESDRIQ---RIGSSLSISHVEESDSGVWNCVANNS  296 (371)
Q Consensus       221 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~a~n~  296 (371)
                      .|.+...+.... +.+|+.+.|.|.+.|.|.| .+.|+++|..+.......   ..+++|.|.++..+|+|.|+|.|.|.
T Consensus         2 ~P~i~~~p~~~~-v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~   80 (94)
T d1biha1           2 YPVLKDQPAEVL-FRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETP   80 (94)
T ss_dssp             CCEECCCCSEEE-EETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEEecCCcEE-EeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeC
Confidence            456666666666 9999999999999999876 699999999886654322   23568999999999999999999999


Q ss_pred             CCCce-eEEEE
Q psy14542        297 EGQDK-MQLFI  306 (371)
Q Consensus       297 ~g~~~-~~~~l  306 (371)
                      .|... ..+.|
T Consensus        81 ~G~~~s~~v~l   91 (94)
T d1biha1          81 AGVASSRVISF   91 (94)
T ss_dssp             TEEEECCCEEE
T ss_pred             CCEEEEEEEEE
Confidence            99743 34444

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.52  E-value=4.5e-14  Score=91.95  Aligned_cols=76  Identities=14%  Similarity=0.294  Sum_probs=61.7

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSA   85 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   85 (371)
                      -+++.|.+.|.. ..+.+|++++|.|.+....+...+.|++++..+.. ...+|.|.+++.+|+|.|+|.+.+...++
T Consensus         3 lPkpvi~~~P~~-~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~~s~~S~   78 (84)
T d1fnla1           3 LPKAVVFLEPQW-YSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS-QASSYFIDAATVNDSGEYRCQTNLSTLSD   78 (84)
T ss_dssp             CCCCEEEEESCC-SEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES-SCSEEEESSCCGGGCEEEEEECSSSCCCC
T ss_pred             CCCCEEEECCCC-cEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeee-cceeeEecCCcccCCEEEEEEccCCCccc
Confidence            356789999988 88999999999996544444445888999998876 66789999999999999999998754433

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=6.4e-14  Score=96.79  Aligned_cols=89  Identities=15%  Similarity=0.216  Sum_probs=70.0

Q ss_pred             cceeeeeeeeeeeecCCeEEEEEEeecCC---CCceEEEeCCccccc---CCceE----------EecceEEEeccCCCC
Q psy14542        222 AAKMFEKHRILNVKKDESVILPCSAQGNP---LPTIKWYKQDSPVEE---SDRIQ----------RIGSSLSISHVEESD  285 (371)
Q Consensus       222 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p---~~~v~W~~~~~~~~~---~~~~~----------~~~~~l~i~~~~~~d  285 (371)
                      +.|...+.... +..|++++|.|.+.|.|   .|.+.|++++.....   ..++.          .....|.|.++..+|
T Consensus         5 ~~Fv~~P~~~~-v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (110)
T d2avga1           5 GLFVMRPQDGE-VTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (110)
T ss_dssp             CSEEECCCCEE-EETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTC
T ss_pred             CEeEECCCeEE-EECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHH
Confidence            44555566666 99999999999999988   478999998753321   12222          122469999999999


Q ss_pred             CeEEEEEEEcCCCCceeEEEEEEecC
Q psy14542        286 SGVWNCVANNSEGQDKMQLFIQYAHG  311 (371)
Q Consensus       286 ~G~Y~C~a~n~~g~~~~~~~l~v~~~  311 (371)
                      +|.|+|.|.|..|....++.|.|.++
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~~~  109 (110)
T d2avga1          84 TGGYRCEVSTKDKFDCSNFNLTVHEA  109 (110)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEESC
T ss_pred             CcEEEEEEEECCCeEEEEEEEEEEec
Confidence            99999999999999999999999764

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=1.6e-14  Score=97.97  Aligned_cols=84  Identities=17%  Similarity=0.334  Sum_probs=69.2

Q ss_pred             cceEEEeCCC-cEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEEE
Q psy14542         10 SLSIEMSPSG-QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQCH   77 (371)
Q Consensus        10 ~~~~~~~p~~-~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~   77 (371)
                      +|.+...+.. ...+..|+++.|.|. ..+.|.+.+.|+++|..+...           ....|.|.+++.+|+|.|+|.
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~-~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCD-ADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCI   81 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEE-EEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEE-EEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEE
Confidence            4566665554 135678999999995 467888999999999887644           456899999999999999999


Q ss_pred             EEcCCCCeEEEEEEEEe
Q psy14542         78 VSADDDSAQMSAQVILG   94 (371)
Q Consensus        78 ~~~~~~~~~~~~~l~v~   94 (371)
                      +.|..|.....+.|.|.
T Consensus        82 a~N~~G~~~~~~~l~V~   98 (100)
T d1qz1a3          82 AENKAGEQDASIHLKVF   98 (100)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEECCCEEEEEEEEEEE
Confidence            99999988888888886

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=1.7e-14  Score=95.95  Aligned_cols=81  Identities=17%  Similarity=0.309  Sum_probs=67.5

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHVSADD   82 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~   82 (371)
                      +.+...|+. ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+...        .+++|.|.+++.+|+|.|+|.+.|..
T Consensus         2 ~~F~~~P~~-~~v~~G~~~~l~C~v-~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~   79 (92)
T d1epfa2           2 LMFKNAPTP-QEFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILA   79 (92)
T ss_dssp             SEEEECCSS-EECCTTSCEEECCEE-ECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGG
T ss_pred             cEEEEcCCC-EEEeCCCcEEEEEEE-eecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECc
Confidence            567777888 999999999999954 56788999999999877655        45679999999999999999999977


Q ss_pred             CCeEEEEEEEE
Q psy14542         83 DSAQMSAQVIL   93 (371)
Q Consensus        83 ~~~~~~~~l~v   93 (371)
                      +.......+.|
T Consensus        80 ~~~~~~~~i~V   90 (92)
T d1epfa2          80 RGEINFKDIQV   90 (92)
T ss_dssp             GTEEEEEEEEE
T ss_pred             CCEEEEEEEEE
Confidence            76655555555

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3e-14  Score=94.46  Aligned_cols=85  Identities=16%  Similarity=0.269  Sum_probs=66.7

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCC-CceEEEeCCcccccCCceE-EecceEEEeccCCCCCeEEEEEEEcCC
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPL-PTIKWYKQDSPVEESDRIQ-RIGSSLSISHVEESDSGVWNCVANNSE  297 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~  297 (371)
                      ..|.+...+.... +.+|+.+.|.|.+.+.|+ ++|+|+|++..+....+.. ..+++|.|.++..+|+|.|+|.|.|..
T Consensus         5 ~~P~~~~~~~~v~-~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~   83 (93)
T d1n26a1           5 RCPAQEVARGVLT-SLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRP   83 (93)
T ss_dssp             CCCCCCCCTTEEE-ECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEESSSSC
T ss_pred             CCCcEEeCCCCEE-EeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecCCCEEEECCCChhcCEEEEEEECCcc
Confidence            4566666666666 889999999999988765 5899999999887765544 456789999999999999999998754


Q ss_pred             CCceeEEEEEE
Q psy14542        298 GQDKMQLFIQY  308 (371)
Q Consensus       298 g~~~~~~~l~v  308 (371)
                      +.   ++.|.|
T Consensus        84 ~~---t~~l~V   91 (93)
T d1n26a1          84 AG---TVHLLV   91 (93)
T ss_dssp             SC---EEEEEE
T ss_pred             cc---EEEEEE
Confidence            33   344444

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=9.1e-14  Score=94.47  Aligned_cols=88  Identities=22%  Similarity=0.393  Sum_probs=68.6

Q ss_pred             ccceeeeeeeeeeeecCCeEEEEEEeecCCCC-ceEEEeCCcccc------cCCceEE----ecceEEEeccC-CCCCeE
Q psy14542        221 SAAKMFEKHRILNVKKDESVILPCSAQGNPLP-TIKWYKQDSPVE------ESDRIQR----IGSSLSISHVE-ESDSGV  288 (371)
Q Consensus       221 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~------~~~~~~~----~~~~l~i~~~~-~~d~G~  288 (371)
                      ||.+...+.... +.+|+.+.|.|.+.|.|.+ .+.|++++....      ...++..    ....|.|.++. .+|+|.
T Consensus         2 PP~i~~~~~~~~-v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~   80 (101)
T d3b5ha1           2 PPRVKAVKSSEH-INEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ   80 (101)
T ss_dssp             SCCCEESCSEEE-ECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEE
T ss_pred             CceEEEcCCcEE-ECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEE
Confidence            566666666666 8999999999999999987 699999764332      1223331    12379999998 579999


Q ss_pred             EEEEEEcCCCCceeEEEEEEe
Q psy14542        289 WNCVANNSEGQDKMQLFIQYA  309 (371)
Q Consensus       289 Y~C~a~n~~g~~~~~~~l~v~  309 (371)
                      |+|.|.|..|.....+.|.|+
T Consensus        81 Y~C~A~N~~G~~~~~~~L~Vr  101 (101)
T d3b5ha1          81 YRCNGTSSKGSDQAIITLRVR  101 (101)
T ss_dssp             EEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEECCCEEEEEEEEEEC
Confidence            999999999999999998874

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.50  E-value=1e-13  Score=93.18  Aligned_cols=76  Identities=20%  Similarity=0.340  Sum_probs=64.0

Q ss_pred             eCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542         16 SPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQCHVSADDDS   84 (371)
Q Consensus        16 ~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   84 (371)
                      .+.. +.+.+|+++.|.|.+ .+.|.+.+.|+++|..+...           ...+|.|.+++.+|+|.|+|.|.|..|.
T Consensus         9 ~~~~-~~~~~G~~v~l~C~~-~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   86 (97)
T d1biha3           9 VSKD-MMAKAGDVTMIYCMY-GSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGK   86 (97)
T ss_dssp             ECCS-EEEETTSCEEEEEEE-ECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSS
T ss_pred             CCCC-EEEecCCeEEEEEEE-EEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCc
Confidence            3555 899999999999954 56788899999999987644           4468999999999999999999999887


Q ss_pred             eE-EEEEEEE
Q psy14542         85 AQ-MSAQVIL   93 (371)
Q Consensus        85 ~~-~~~~l~v   93 (371)
                      .. ..+.|.|
T Consensus        87 ~~s~s~~L~V   96 (97)
T d1biha3          87 PQKHSLKLTV   96 (97)
T ss_dssp             CEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            54 5677776

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.8e-14  Score=93.35  Aligned_cols=76  Identities=18%  Similarity=0.265  Sum_probs=64.1

Q ss_pred             eecCCeEEEEEEeecC-CCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEEecC
Q psy14542        234 VKKDESVILPCSAQGN-PLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQYAHG  311 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~  311 (371)
                      +.+|+.++|.|.+.+. +...+.|++||..+....    ..+.|.|.++..+|+|.|+|+|.|..|.. +..+.|.|.++
T Consensus        12 V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~----~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~~~   87 (89)
T d1f2qa2          12 VMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY----ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKA   87 (89)
T ss_dssp             EETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC----CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECS
T ss_pred             EeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc----ccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEEeC
Confidence            8999999999999765 556899999998776543    35679999999999999999999988764 57788999888


Q ss_pred             cc
Q psy14542        312 KY  313 (371)
Q Consensus       312 p~  313 (371)
                      |+
T Consensus        88 Pr   89 (89)
T d1f2qa2          88 PR   89 (89)
T ss_dssp             CC
T ss_pred             CC
Confidence            74

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.50  E-value=5.2e-14  Score=97.28  Aligned_cols=87  Identities=18%  Similarity=0.254  Sum_probs=65.9

Q ss_pred             ccceeee-eeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccC----C--ceE-----------EecceEEEeccC
Q psy14542        221 SAAKMFE-KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEES----D--RIQ-----------RIGSSLSISHVE  282 (371)
Q Consensus       221 ~p~~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~----~--~~~-----------~~~~~l~i~~~~  282 (371)
                      +|.+... +.+.. +..|+++.|.|.+.|.|.|.+.|++++......    .  ...           ...+.|.|.++.
T Consensus         4 ~P~i~~~~P~~~t-v~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   82 (109)
T d2fdbp2           4 RPILQAGLPANAS-TVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT   82 (109)
T ss_dssp             CCEECTTCSCCEE-ECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCC
T ss_pred             CCEEcCCCCCCEE-EecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCC
Confidence            4555443 45555 999999999999999999999999876432111    0  000           123579999999


Q ss_pred             CCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        283 ESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       283 ~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      .+|+|.|+|.|.|..|....++.|.|
T Consensus        83 ~~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          83 FEDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             HHHCeEEEEEEEECCCEEEEEEEEEE
Confidence            99999999999999999999999887

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.9e-14  Score=91.78  Aligned_cols=80  Identities=16%  Similarity=0.354  Sum_probs=61.7

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCC-eeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCeEEE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSS-AKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMS   88 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~   88 (371)
                      +|.|.+.|+. ..+.+|++++|.|.+. +.+.+ .+.|++++..+.. ....|.|.+++.+|+|.|+|.+.+...++  .
T Consensus         1 KP~It~~P~~-~~v~~G~~v~L~C~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~i~~v~~~d~G~Y~C~a~~s~~S~--~   75 (82)
T d1f2qa1           1 KPKVSLNPPW-NRIFKGENVTLTCNGN-NFFEVSSTKWFHNGSLSEE-TNSSLNIVNAKFEDSGEYKCQHQQVNESE--P   75 (82)
T ss_dssp             CCCCEEESSC-SEEETTCCEEEECCTT-CC----CCEEEETTEECSC-CSSEEEECSCCGGGCEEEEEECTTSSCCC--C
T ss_pred             CCEEEEcCCC-eEEeCCCeEEEEEEEe-eeeeecceeeeeeeeeeec-ccceeEECCCChhhCCcEEEEecCCCCcc--c
Confidence            4678889987 7899999999999654 44444 5788999988775 66789999999999999999998754443  4


Q ss_pred             EEEEEe
Q psy14542         89 AQVILG   94 (371)
Q Consensus        89 ~~l~v~   94 (371)
                      +.|.|.
T Consensus        76 v~l~V~   81 (82)
T d1f2qa1          76 VYLEVF   81 (82)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555553

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.49  E-value=2.8e-14  Score=96.02  Aligned_cols=73  Identities=19%  Similarity=0.381  Sum_probs=63.8

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQ   90 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   90 (371)
                      ..+.+|+++.|.|. ..+.|.+.+.|++||..+...          ...+|.|.+++.+|+|.|+|.+.|..|....++.
T Consensus        15 ~~v~~G~~v~l~C~-~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   93 (97)
T d3dara1          15 HAVPAANTVKFRCP-AGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH   93 (97)
T ss_dssp             EEECTTCCEEEECC-EEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEECCCCcEEEEEE-EeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEE
Confidence            56889999999995 567788999999999988654          4568999999999999999999999998888888


Q ss_pred             EEEe
Q psy14542         91 VILG   94 (371)
Q Consensus        91 l~v~   94 (371)
                      |.|.
T Consensus        94 l~Vl   97 (97)
T d3dara1          94 LDVV   97 (97)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            8873

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.49  E-value=3.8e-14  Score=93.11  Aligned_cols=74  Identities=19%  Similarity=0.348  Sum_probs=61.5

Q ss_pred             eecCCeEEEEEEeec-CCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEEecC
Q psy14542        234 VKKDESVILPCSAQG-NPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQYAHG  311 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~  311 (371)
                      +.+|+.++|.|.+.+ .|.+.+.|+++|..+....    .++.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|+.|
T Consensus        12 v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~----~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V~~P   87 (88)
T d2fcba2          12 FQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSR----SDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAP   87 (88)
T ss_dssp             ECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEES----SCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEECCC
T ss_pred             EecCCeEEEEEEecCCCCCcEEEEEeecccccccc----cccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEEEeCC
Confidence            889999999999975 4667899999998765432    35679999999999999999999998874 56688888765

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.49  E-value=1.4e-14  Score=97.58  Aligned_cols=87  Identities=22%  Similarity=0.379  Sum_probs=66.3

Q ss_pred             cccceeeeeeeeeeeecC---CeEEEEEEeecCCCCceEEEeCCcccccCCc--eEE-ecceEEEeccCCCCCeEEEEEE
Q psy14542        220 LSAAKMFEKHRILNVKKD---ESVILPCSAQGNPLPTIKWYKQDSPVEESDR--IQR-IGSSLSISHVEESDSGVWNCVA  293 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g---~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~--~~~-~~~~l~i~~~~~~d~G~Y~C~a  293 (371)
                      .+|.+...+.+.. +..|   +++.|.|.+.|.|.|.+.|++||..+.....  +.. .+..|.|..+..+|+|.|+|.|
T Consensus         3 ~~P~f~~~P~~~~-~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a   81 (97)
T d1cs6a1           3 YGPVFEEQPAHTL-FPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVA   81 (97)
T ss_dssp             EEEEEEECCCCEE-EETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEE
T ss_pred             cCCEEEEeCCCEE-EECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEE
Confidence            4566666666555 5554   7899999999999999999999998865432  223 3346777888999999999999


Q ss_pred             EcCCCCc-eeEEEEE
Q psy14542        294 NNSEGQD-KMQLFIQ  307 (371)
Q Consensus       294 ~n~~g~~-~~~~~l~  307 (371)
                      .|..|.. +..+.|+
T Consensus        82 ~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          82 TNARGTVVSREASLR   96 (97)
T ss_dssp             EETTEEEECCCEEEE
T ss_pred             EECCCEEEEEEEEEe
Confidence            9999975 4456554

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.9e-14  Score=101.48  Aligned_cols=82  Identities=23%  Similarity=0.434  Sum_probs=65.8

Q ss_pred             eeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCC-----------------------------ceEE----ecc
Q psy14542        228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD-----------------------------RIQR----IGS  274 (371)
Q Consensus       228 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~-----------------------------~~~~----~~~  274 (371)
                      +.... +..|+.++|.|.+.|.|.|.+.|++++..+....                             ++..    ...
T Consensus        16 ~~~v~-v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   94 (130)
T d1gxea_          16 PDTIV-VVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRS   94 (130)
T ss_dssp             CCEEE-ESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEE
T ss_pred             CCCEE-EEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEE
Confidence            34445 8999999999999999999999999876543221                             1111    123


Q ss_pred             eEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEec
Q psy14542        275 SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAH  310 (371)
Q Consensus       275 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  310 (371)
                      .|.|.++..+|+|.|+|.|.|..|....++.|.|.+
T Consensus        95 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~d  130 (130)
T d1gxea_          95 IFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID  130 (130)
T ss_dssp             EEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEECC
T ss_pred             EEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEEC
Confidence            699999999999999999999999999999998863

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=9.2e-14  Score=96.08  Aligned_cols=77  Identities=23%  Similarity=0.417  Sum_probs=60.1

Q ss_pred             eecCCeEEEEEEee-cCCCCceEEEeCCcccccCCceE------------EecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        234 VKKDESVILPCSAQ-GNPLPTIKWYKQDSPVEESDRIQ------------RIGSSLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       234 ~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~------------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      +..|+.+.|.|.+. |.|.+.+.|++++..+.......            ...+.|.|.++..+|+|.|+|.|.|..|..
T Consensus        14 v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~   93 (110)
T d1f97a2          14 VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTA   93 (110)
T ss_dssp             EETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCC
T ss_pred             EecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCcE
Confidence            88999999999985 79999999999998765442211            123479999999999999999999999987


Q ss_pred             ee--EEEEEEec
Q psy14542        301 KM--QLFIQYAH  310 (371)
Q Consensus       301 ~~--~~~l~v~~  310 (371)
                      ..  .+.|.|.+
T Consensus        94 ~~s~~v~l~V~~  105 (110)
T d1f97a2          94 MRSEAAHMDAVE  105 (110)
T ss_dssp             EECCCEEEEEES
T ss_pred             EEEEEEEEEEEe
Confidence            54  56666654

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.47  E-value=6.1e-14  Score=92.27  Aligned_cols=73  Identities=15%  Similarity=0.242  Sum_probs=60.2

Q ss_pred             eecCCeEEEEEEeec-CCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEEec
Q psy14542        234 VKKDESVILPCSAQG-NPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQYAH  310 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~  310 (371)
                      +.+|++++|.|.+.+ .|.+.+.|++||..+...    ..++.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|.+
T Consensus        14 v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~----~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~itV~E   88 (89)
T d1fnla2          14 FKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF----HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ   88 (89)
T ss_dssp             EETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE----EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EccCCeEEEEEEecCCCCCcEEEEEEccccccee----ccccccEECccceeccceEEEEEEeCCCCeEEeeEEEEEEe
Confidence            889999999999875 455689999999876532    245689999999999999999999998864 4567787765

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.2e-13  Score=95.96  Aligned_cols=86  Identities=16%  Similarity=0.236  Sum_probs=67.8

Q ss_pred             eeeeeeeeecCCeEEEEEEeecCC---CCceEEEeCCcccc---cCCceE----------EecceEEEeccCCCCCeEEE
Q psy14542        227 EKHRILNVKKDESVILPCSAQGNP---LPTIKWYKQDSPVE---ESDRIQ----------RIGSSLSISHVEESDSGVWN  290 (371)
Q Consensus       227 ~~~~~~~~~~g~~~~l~C~~~~~p---~~~v~W~~~~~~~~---~~~~~~----------~~~~~l~i~~~~~~d~G~Y~  290 (371)
                      .+.+.. +..|+.+.|.|.+.|.|   .|.+.|++++....   ...++.          .....|.|.++..+|+|.|+
T Consensus         6 ~P~~~~-v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   84 (113)
T d2dava1           6 KPQGGT-VKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYR   84 (113)
T ss_dssp             CCCCCE-EETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEE
T ss_pred             CCceEE-EeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEE
Confidence            344445 99999999999999988   47899999875321   112221          11246999999999999999


Q ss_pred             EEEEcCCCCceeEEEEEEecCcc
Q psy14542        291 CVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       291 C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      |.|.|..|..+.++.|.|.+++.
T Consensus        85 C~a~N~~G~~~~~~~L~V~~~~~  107 (113)
T d2dava1          85 CEVTYKDKFDSCSFDLEVHESTG  107 (113)
T ss_dssp             EEEECSSCEEEECCEEEEECCCC
T ss_pred             EEEEeCCCEEEEEEEEEEEcCCC
Confidence            99999999999999999987766

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=1.5e-13  Score=94.97  Aligned_cols=73  Identities=26%  Similarity=0.424  Sum_probs=60.7

Q ss_pred             EEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------------CeeEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542         22 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------------SDEVLVLDRVQREDAGMYQCHVSADDDS   84 (371)
Q Consensus        22 ~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   84 (371)
                      .+.+|+++.|.|.+..+.|.+.+.|++++..+...                 ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus        13 ~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~   92 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT   92 (110)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSC
T ss_pred             EEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCc
Confidence            58899999999977678899999999998876443                 3447999999999999999999999887


Q ss_pred             eEE--EEEEEEe
Q psy14542         85 AQM--SAQVILG   94 (371)
Q Consensus        85 ~~~--~~~l~v~   94 (371)
                      ...  .+.|.|.
T Consensus        93 ~~~s~~v~l~V~  104 (110)
T d1f97a2          93 AMRSEAAHMDAV  104 (110)
T ss_dssp             CEECCCEEEEEE
T ss_pred             EEEEEEEEEEEE
Confidence            644  5667766

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5.2e-14  Score=96.37  Aligned_cols=76  Identities=20%  Similarity=0.420  Sum_probs=63.9

Q ss_pred             CeEEEEEEeecCCCCceEEEeCCcccccCCceEE-----------ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542        238 ESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR-----------IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI  306 (371)
Q Consensus       238 ~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  306 (371)
                      ....+.|.+.|+|.|.+.|++||..+..+.+...           ..+.|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus        16 ~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~v   95 (107)
T d1he7a_          16 HHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA   95 (107)
T ss_dssp             CEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEEEE
Confidence            3344556899999999999999999877655431           12469999999999999999999999999999999


Q ss_pred             EEecCcc
Q psy14542        307 QYAHGKY  313 (371)
Q Consensus       307 ~v~~~p~  313 (371)
                      .|.++|.
T Consensus        96 ~v~~~P~  102 (107)
T d1he7a_          96 AFMDNPF  102 (107)
T ss_dssp             CCCSCTT
T ss_pred             EEEcCCC
Confidence            9998886

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=6.5e-14  Score=93.13  Aligned_cols=76  Identities=28%  Similarity=0.493  Sum_probs=63.3

Q ss_pred             CCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQCHVSADDDSA   85 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   85 (371)
                      |.. +.+.+|+++.|.|.+ .+.|.+.+.|+|++..+...           ....|.|.+++.+|+|.|+|.|.|..|..
T Consensus         3 P~~-~~v~~G~~~~l~C~v-~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   80 (91)
T d1rhfa1           3 PVK-LTVSQGQPVKLNCSV-EGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETE   80 (91)
T ss_dssp             CEE-EEEETTCCEEEEEEE-ESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCE
T ss_pred             Cee-EEEcCCCeEEEEEEE-EecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCE
Confidence            455 789999999999965 67788999999999887654           34579999999999999999999988875


Q ss_pred             -EEEEEEEEe
Q psy14542         86 -QMSAQVILG   94 (371)
Q Consensus        86 -~~~~~l~v~   94 (371)
                       +..+.|.|.
T Consensus        81 ~S~~~~l~V~   90 (91)
T d1rhfa1          81 ISQPVWLTVE   90 (91)
T ss_dssp             ECCCEEEEEE
T ss_pred             EEEEEEEEEE
Confidence             456777764

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=2.3e-13  Score=92.61  Aligned_cols=81  Identities=23%  Similarity=0.484  Sum_probs=64.4

Q ss_pred             eeeeeeeecCCeEEEEEEeecCCCCceEEEeCCccccc------------CCceEEecceEEEeccCCCCCeEEEEEEEc
Q psy14542        228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEE------------SDRIQRIGSSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       228 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~------------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      ..... +.+|+++.|.|.+.|.|.|.+.|++++.....            ..+....+++|.|.++..+|+|.|+|.|.|
T Consensus         8 ~~~v~-v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~a~n   86 (102)
T d1f97a1           8 QSDVQ-VPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSE   86 (102)
T ss_dssp             CSEEE-EETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEE
T ss_pred             CCcEE-EeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEEEEEE
Confidence            33444 89999999999999999999999986653211            123345567899999999999999999999


Q ss_pred             CCCCceeEEEEEEe
Q psy14542        296 SEGQDKMQLFIQYA  309 (371)
Q Consensus       296 ~~g~~~~~~~l~v~  309 (371)
                      ..|.....+.|.|.
T Consensus        87 ~~g~~~~~~~v~v~  100 (102)
T d1f97a1          87 EGGQNYGEVSIHLT  100 (102)
T ss_dssp             TTSSSEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEE
Confidence            99998777666654

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.5e-13  Score=93.41  Aligned_cols=83  Identities=17%  Similarity=0.250  Sum_probs=65.5

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCC-eeEEEeCCEEE----eeC-----------CeeEEEEccCC-cCCCe
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSS-AKAWLKDGLVL----RRN-----------SDEVLVLDRVQ-REDAG   72 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~-~~~W~~~~~~~----~~~-----------~~~~l~i~~~~-~~d~G   72 (371)
                      ||.|...+.. ..+.+|+.+.|.|.+ .+.|.+ .+.|++++...    ...           ....|.|.+++ .+|+|
T Consensus         2 PP~i~~~~~~-~~v~~G~~v~l~C~v-~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G   79 (101)
T d3b5ha1           2 PPRVKAVKSS-EHINEGETAMLVCKS-ESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPG   79 (101)
T ss_dssp             SCCCEESCSE-EEECTTSCEEEEEEC-CCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSE
T ss_pred             CceEEEcCCc-EEECcCCeEEEEEEE-EecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCE
Confidence            6778887777 889999999999965 455655 79999864211    111           56689999998 57999


Q ss_pred             EEEEEEEcCCCCeEEEEEEEEe
Q psy14542         73 MYQCHVSADDDSAQMSAQVILG   94 (371)
Q Consensus        73 ~Y~C~~~~~~~~~~~~~~l~v~   94 (371)
                      .|+|.|.|..|.....+.|.|.
T Consensus        80 ~Y~C~A~N~~G~~~~~~~L~Vr  101 (101)
T d3b5ha1          80 QYRCNGTSSKGSDQAIITLRVR  101 (101)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEEECCCEEEEEEEEEEC
Confidence            9999999999998888888873

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=1.8e-13  Score=92.01  Aligned_cols=81  Identities=20%  Similarity=0.442  Sum_probs=61.9

Q ss_pred             eeeeeeeecCCeEEEEEEeecCCC-CceEEEeCC-ccccc-CCceEE-----ecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        228 KHRILNVKKDESVILPCSAQGNPL-PTIKWYKQD-SPVEE-SDRIQR-----IGSSLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       228 ~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~~~~-~~~~~-~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      +.... +..|+.+.|.|.+.|.|+ +++.|++++ ..+.. ..++..     ..++|.|.++..+|+|.|+|.|.|..|.
T Consensus         7 P~~~~-v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   85 (97)
T d1epfa1           7 PSQGE-ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGT   85 (97)
T ss_dssp             SSSEE-EETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTE
T ss_pred             CCCEE-EccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCc
Confidence            33444 899999999999999885 799999854 44333 334432     1247999999999999999999999997


Q ss_pred             c-eeEEEEEEe
Q psy14542        300 D-KMQLFIQYA  309 (371)
Q Consensus       300 ~-~~~~~l~v~  309 (371)
                      . ..++.|.|.
T Consensus        86 ~~~~tv~l~V~   96 (97)
T d1epfa1          86 QSEATVNVKIF   96 (97)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            4 456777764

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.4e-13  Score=95.04  Aligned_cols=84  Identities=24%  Similarity=0.248  Sum_probs=66.7

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCC--CCeeEEEeCCEEEeeC------------------CeeEEEEccCCcC
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRL--SSAKAWLKDGLVLRRN------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~--~~~~~W~~~~~~~~~~------------------~~~~l~i~~~~~~   69 (371)
                      .+.+...|.. +.+.+|++++|.|.+....+  .+.+.|+|++......                  ....|.|.+++.+
T Consensus         4 ~~~Fv~~P~~-~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   82 (110)
T d2avga1           4 IGLFVMRPQD-GEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA   82 (110)
T ss_dssp             TCSEEECCCC-EEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTT
T ss_pred             CCEeEECCCe-EEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHH
Confidence            3456666777 99999999999997654332  5689999976322111                  3457999999999


Q ss_pred             CCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542         70 DAGMYQCHVSADDDSAQMSAQVILG   94 (371)
Q Consensus        70 d~G~Y~C~~~~~~~~~~~~~~l~v~   94 (371)
                      |+|.|+|.+.|..|.....+.|.|.
T Consensus        83 D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (110)
T d2avga1          83 FTGGYRCEVSTKDKFDCSNFNLTVH  107 (110)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             HCcEEEEEEEECCCeEEEEEEEEEE
Confidence            9999999999999999999999997

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.7e-14  Score=98.85  Aligned_cols=74  Identities=20%  Similarity=0.425  Sum_probs=60.4

Q ss_pred             eecCCeEEEEEEe-ecCCCCceEEEeCCcccccCCceE-----------EecceEEEeccCCCCCeEEEEEEEcCCCCce
Q psy14542        234 VKKDESVILPCSA-QGNPLPTIKWYKQDSPVEESDRIQ-----------RIGSSLSISHVEESDSGVWNCVANNSEGQDK  301 (371)
Q Consensus       234 ~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~-----------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  301 (371)
                      +..|+.+.|.|.+ .|.|.+.+.|++++..+....+..           ...+.|.|.++..+|+|.|+|.|.|..|...
T Consensus        14 v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~   93 (104)
T d1nbqa2          14 ATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPM   93 (104)
T ss_dssp             EETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCE
T ss_pred             EecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCCceE
Confidence            8899999999998 479999999999998876553322           1235799999999999999999999999886


Q ss_pred             eEEEEE
Q psy14542        302 MQLFIQ  307 (371)
Q Consensus       302 ~~~~l~  307 (371)
                      .+..|.
T Consensus        94 ~s~~v~   99 (104)
T d1nbqa2          94 TSNAVR   99 (104)
T ss_dssp             ECCCBC
T ss_pred             EEEEEE
Confidence            654443

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.2e-14  Score=96.36  Aligned_cols=74  Identities=18%  Similarity=0.263  Sum_probs=59.3

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQCHVSAD   81 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~   81 (371)
                      ...|.+.+.+.. +.+.+|++++|.|.+....+.++|.|+|++..+...      .+.+|.|.+++.+|+|.|+|.+.+.
T Consensus         4 ~~~P~~~~~~~~-v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   82 (93)
T d1n26a1           4 RRCPAQEVARGV-LTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGR   82 (93)
T ss_dssp             SCCCCCCCCTTE-EEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEESSSS
T ss_pred             CCCCcEEeCCCC-EEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecCCCEEEECCCChhcCEEEEEEECCc
Confidence            456888887777 899999999999955444455689999987665443      4568999999999999999999754


Q ss_pred             C
Q psy14542         82 D   82 (371)
Q Consensus        82 ~   82 (371)
                      .
T Consensus        83 ~   83 (93)
T d1n26a1          83 P   83 (93)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.9e-13  Score=92.52  Aligned_cols=85  Identities=14%  Similarity=0.227  Sum_probs=70.7

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCC--eeEEEeCCEEEeeC------CeeEEEEccCCcCCCeEEEEEEEc
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSS--AKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQCHVSA   80 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~--~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~   80 (371)
                      .++++.+.|.. ..+.+|+.++|.|.+..+.|.+  .+.|++++..+...      ....|.|..++.+|.|.|+|+|.|
T Consensus         3 ~P~~v~i~p~~-~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~n   81 (103)
T d1iama1           3 TPERVELAPLP-SWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTEL   81 (103)
T ss_dssp             CCSEEEECCCC-SEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred             CCCceEEeCCC-ceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccccccceEEEEEeeehhHCCCEEEEEEEe
Confidence            46778888887 7799999999999887777765  58899999988765      456899999999999999999999


Q ss_pred             CCCCeEEEEEEEEe
Q psy14542         81 DDDSAQMSAQVILG   94 (371)
Q Consensus        81 ~~~~~~~~~~l~v~   94 (371)
                      ..+.....+.+.+.
T Consensus        82 ~~g~~~~~~~~~~s   95 (103)
T d1iama1          82 DLRPQGLELFENTS   95 (103)
T ss_dssp             ECGGGTSCEEEEEC
T ss_pred             CCCCccCeEeeeEc
Confidence            88876666666665

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.5e-13  Score=93.32  Aligned_cols=74  Identities=23%  Similarity=0.366  Sum_probs=62.3

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceE----------------EecceEEEeccCCCCCe-EEEEEEEcC
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ----------------RIGSSLSISHVEESDSG-VWNCVANNS  296 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~----------------~~~~~l~i~~~~~~d~G-~Y~C~a~n~  296 (371)
                      +..|+.+.|.|.+.|.|.|.+.|+++|..+.......                ...+.|.|.++..+|.| .|+|.|.|.
T Consensus        14 v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A~N~   93 (107)
T d1iray3          14 VDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNT   93 (107)
T ss_dssp             CCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEEECS
T ss_pred             EeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEEEeC
Confidence            7889999999999999999999999998775443211                11246999999999999 599999999


Q ss_pred             CCCceeEEEEE
Q psy14542        297 EGQDKMQLFIQ  307 (371)
Q Consensus       297 ~g~~~~~~~l~  307 (371)
                      .|..+..+.|.
T Consensus        94 ~G~~~~~i~L~  104 (107)
T d1iray3          94 HGIDAAYIQLI  104 (107)
T ss_dssp             SCEEEEEEEEE
T ss_pred             CCeEEEEEEEE
Confidence            99998888875

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.45  E-value=1.9e-13  Score=94.36  Aligned_cols=83  Identities=24%  Similarity=0.303  Sum_probs=65.3

Q ss_pred             cceEEEe-CCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------------------CeeEEEEccC
Q psy14542         10 SLSIEMS-PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------------------SDEVLVLDRV   66 (371)
Q Consensus        10 ~~~~~~~-p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------------------~~~~l~i~~~   66 (371)
                      +|.|... |.. ..+.+|++++|.|.+ .+.|.+.+.|+|++......                      ....|.|.++
T Consensus         4 ~P~i~~~~P~~-~tv~~G~~v~l~C~v-~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~   81 (109)
T d2fdbp2           4 RPILQAGLPAN-ASTVVGGDVEFVCKV-YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNV   81 (109)
T ss_dssp             CCEECTTCSCC-EEECTTCCEEEEEEE-ECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSC
T ss_pred             CCEEcCCCCCC-EEEecCCcEEEEEEE-EEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCC
Confidence            4555544 566 899999999999965 57889999999865432111                      3468999999


Q ss_pred             CcCCCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542         67 QREDAGMYQCHVSADDDSAQMSAQVILG   94 (371)
Q Consensus        67 ~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   94 (371)
                      +.+|+|.|+|.|.|..|.....+.|.|.
T Consensus        82 ~~~D~G~Y~C~a~N~~G~~~~~~~L~Vl  109 (109)
T d2fdbp2          82 TFEDAGEYTCLAGNSIGISFHSAWLTVL  109 (109)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CHHHCeEEEEEEEECCCEEEEEEEEEEC
Confidence            9999999999999999999888888873

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.2e-14  Score=96.76  Aligned_cols=82  Identities=23%  Similarity=0.319  Sum_probs=69.7

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCcCCCe-EEEEEEEcC
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAG-MYQCHVSAD   81 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~G-~Y~C~~~~~   81 (371)
                      .|.|...+.. ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+...       ....|.|.+++.+|+| .|+|.|.|.
T Consensus         2 ~P~i~~~~~~-~~v~~G~~v~l~C~~-~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~   79 (92)
T d2ifga1           2 VPTLKVQVPN-ASVDVGDDVLLRCQV-EGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAEND   79 (92)
T ss_dssp             CCEEEEECCS-SCCBTTCCEEEEEEE-ECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEET
T ss_pred             CCEEEEeCCC-EEEeCCCEEEEeeec-cCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcC
Confidence            4778888887 889999999999954 67889999999988655443       6678999999999999 799999999


Q ss_pred             CCCeEEEEEEEE
Q psy14542         82 DDSAQMSAQVIL   93 (371)
Q Consensus        82 ~~~~~~~~~l~v   93 (371)
                      .|....++.|.|
T Consensus        80 ~G~~~~s~~l~V   91 (92)
T d2ifga1          80 VGRAEVSVQVNV   91 (92)
T ss_dssp             TEECCEEECCCC
T ss_pred             CCEEEEEEEEEE
Confidence            998887777665

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.4e-13  Score=93.96  Aligned_cols=81  Identities=15%  Similarity=0.181  Sum_probs=62.3

Q ss_pred             eeeeeeecCCeEEEEEEeecCC-CCceEEEeCCcccccCC---ceE-Ee-----cceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542        229 HRILNVKKDESVILPCSAQGNP-LPTIKWYKQDSPVEESD---RIQ-RI-----GSSLSISHVEESDSGVWNCVANNSEG  298 (371)
Q Consensus       229 ~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~~~~~~~~~~---~~~-~~-----~~~l~i~~~~~~d~G~Y~C~a~n~~g  298 (371)
                      .... +..|+++.|.|.+.|.| .|.++|++++..+....   ... ..     ...|.|.++..+|+|.|+|.|.|..|
T Consensus        11 ~~~~-v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   89 (104)
T d2aw2a1          11 SEHS-ILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSN   89 (104)
T ss_dssp             EEEE-EETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CeEE-EeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCC
Confidence            3344 99999999999999998 48999999987653221   111 11     12599999999999999999999999


Q ss_pred             Cc-eeEEEEEEec
Q psy14542        299 QD-KMQLFIQYAH  310 (371)
Q Consensus       299 ~~-~~~~~l~v~~  310 (371)
                      .. +.++.|.|.+
T Consensus        90 ~~~s~~~~l~V~e  102 (104)
T d2aw2a1          90 LIESHSTTLYVTD  102 (104)
T ss_dssp             EEECCCEEEEEEC
T ss_pred             eEEEEEEEEEEEE
Confidence            75 4567777754

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=8.2e-14  Score=95.51  Aligned_cols=76  Identities=17%  Similarity=0.462  Sum_probs=62.6

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccC------------CceEEecceEEEeccCCCCCeEEEEEEEcCCCCce
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEES------------DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDK  301 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~------------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  301 (371)
                      +.+|+++.|.|.+.|.|.|.+.|++++..+...            .+....+++|.|.++..+|+|.|+|.|.|..|...
T Consensus        16 v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~G~~~   95 (105)
T d1nbqa1          16 IPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSY   95 (105)
T ss_dssp             EETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEETTSSCE
T ss_pred             EeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEECCCCEE
Confidence            889999999999999999999999987654321            22334557899999999999999999999999987


Q ss_pred             eEEEEEEe
Q psy14542        302 MQLFIQYA  309 (371)
Q Consensus       302 ~~~~l~v~  309 (371)
                      ..+.|.|.
T Consensus        96 ~~~~v~v~  103 (105)
T d1nbqa1          96 GEVKVKLI  103 (105)
T ss_dssp             ECCEEECC
T ss_pred             EEEEEEEE
Confidence            77666553

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3e-13  Score=89.44  Aligned_cols=74  Identities=20%  Similarity=0.342  Sum_probs=60.9

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCcccccCCc-eE-EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDR-IQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~-~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      +.+|+++.|.|.+.+ |.|.+.|+++|..+..... +. ..++.|.|.++..+|+|.|+|.|.|..|.......|.+
T Consensus         9 ~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l~~   84 (92)
T d1olza1           9 FKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAK   84 (92)
T ss_dssp             EETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEEEE
T ss_pred             EeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEEEEEE
Confidence            899999999999987 6689999999998765432 22 35568999999999999999999999998765555443

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.42  E-value=7e-14  Score=93.60  Aligned_cols=74  Identities=24%  Similarity=0.376  Sum_probs=61.2

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCC-CeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEEEc
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHVSA   80 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~   80 (371)
                      .|.|...|.. +.+.+|+.+.|.|.+. +.|. ..+.|++||..+...        ..++|.|.+++.+|+|.|+|.|.|
T Consensus         2 ~P~i~~~p~~-~~v~~g~~~~l~C~~~-g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   79 (94)
T d1biha1           2 YPVLKDQPAE-VLFRENNPTVLECIIE-GNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAET   79 (94)
T ss_dssp             CCEECCCCSE-EEEETTSCEEECCCEE-SCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEecCCc-EEEeCCCeEEEEEEec-CCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEe
Confidence            3667777777 8999999999999654 5554 479999999877544        567899999999999999999999


Q ss_pred             CCCCe
Q psy14542         81 DDDSA   85 (371)
Q Consensus        81 ~~~~~   85 (371)
                      ..|..
T Consensus        80 ~~G~~   84 (94)
T d1biha1          80 PAGVA   84 (94)
T ss_dssp             TTEEE
T ss_pred             CCCEE
Confidence            88854

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.8e-13  Score=89.72  Aligned_cols=80  Identities=25%  Similarity=0.413  Sum_probs=67.8

Q ss_pred             eecCCeEEEEEEee-cCCCCceEEEeCCccccc----CCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        234 VKKDESVILPCSAQ-GNPLPTIKWYKQDSPVEE----SDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       234 ~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      +.+|+.+.|.|.+. +.|.++|.|++++..+..    ..++...+++|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus        14 ~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~L~V   93 (101)
T d1iray1          14 SSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKF   93 (101)
T ss_dssp             EETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeEEEEEEEEE
Confidence            77899999999885 678899999999875542    2345567789999999999999999999999999999999999


Q ss_pred             ecCcc
Q psy14542        309 AHGKY  313 (371)
Q Consensus       309 ~~~p~  313 (371)
                      ....+
T Consensus        94 ~~~~p   98 (101)
T d1iray1          94 VENEP   98 (101)
T ss_dssp             ECCCT
T ss_pred             EeCCC
Confidence            76543

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.7e-13  Score=92.71  Aligned_cols=92  Identities=9%  Similarity=0.163  Sum_probs=70.5

Q ss_pred             ccceeeeeeeeeeeecCCeEEEEEEeec-CCCC--ceEEEeCCcccccCCceE-EecceEEEeccCCCCCeEEEEEEEcC
Q psy14542        221 SAAKMFEKHRILNVKKDESVILPCSAQG-NPLP--TIKWYKQDSPVEESDRIQ-RIGSSLSISHVEESDSGVWNCVANNS  296 (371)
Q Consensus       221 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~v~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~  296 (371)
                      |+.+.+.+.... +.+|+.++|.|.+.| .|.+  .+.|++++..+....... ...+.|.|..+..+|+|.|+|+|+|.
T Consensus         4 P~~v~i~p~~~~-v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~n~   82 (103)
T d1iama1           4 PERVELAPLPSW-QPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELD   82 (103)
T ss_dssp             CSEEEECCCCSE-ECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEE
T ss_pred             CCceEEeCCCce-EeCCCEEEEEEEecCCCCCCceEEEEccccccccccccccccceEEEEEeeehhHCCCEEEEEEEeC
Confidence            444555555555 889999999999986 5655  478999998876543221 22357999999999999999999999


Q ss_pred             CCCceeEEEEEEecCcc
Q psy14542        297 EGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       297 ~g~~~~~~~l~v~~~p~  313 (371)
                      .|.....+.+.+..+..
T Consensus        83 ~g~~~~~~~~~~s~p~~   99 (103)
T d1iama1          83 LRPQGLELFENTSAPYQ   99 (103)
T ss_dssp             CGGGTSCEEEEECCCEE
T ss_pred             CCCccCeEeeeEcCCCE
Confidence            99988888888876655

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.8e-13  Score=97.92  Aligned_cols=74  Identities=18%  Similarity=0.316  Sum_probs=63.7

Q ss_pred             cEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------------------------------------CeeEE
Q psy14542         20 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------------------------------------SDEVL   61 (371)
Q Consensus        20 ~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------------------------------------~~~~l   61 (371)
                      .+.+.+|++++|.|.+ .+.|.+.+.|++++..+...                                      ....|
T Consensus        18 ~v~v~~G~~v~L~C~v-~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L   96 (130)
T d1gxea_          18 TIVVVAGNKLRLDVPI-SGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIF   96 (130)
T ss_dssp             EEEESSSSCCCCEEEC-CSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEEEE
T ss_pred             CEEEEcCCeEEEEEEE-EEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEEEE
Confidence            3889999999999955 68899999999976554332                                      44679


Q ss_pred             EEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542         62 VLDRVQREDAGMYQCHVSADDDSAQMSAQVILG   94 (371)
Q Consensus        62 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   94 (371)
                      .|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus        97 ~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          97 TVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             ECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             EECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            999999999999999999999999999999886

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.40  E-value=8e-14  Score=95.11  Aligned_cols=76  Identities=17%  Similarity=0.293  Sum_probs=61.4

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCC
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDD   83 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~   83 (371)
                      +...|..++.+.+|+++.|.|.+..+.|.+.+.|+|++..+...         ..++|.|.+++.+|+|.|+|.|.|..+
T Consensus         6 F~~~~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g   85 (105)
T d1cs6a2           6 FSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHID   85 (105)
T ss_dssp             CCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEET
T ss_pred             ccCCCCCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCC
Confidence            34455555899999999999966678889999999987654322         566899999999999999999999887


Q ss_pred             CeEEE
Q psy14542         84 SAQMS   88 (371)
Q Consensus        84 ~~~~~   88 (371)
                      .....
T Consensus        86 ~~~~~   90 (105)
T d1cs6a2          86 FITKS   90 (105)
T ss_dssp             TEEEE
T ss_pred             CEEEE
Confidence            76544

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=4e-13  Score=90.10  Aligned_cols=80  Identities=23%  Similarity=0.390  Sum_probs=64.3

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAGMYQCHVSADD   82 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~~~   82 (371)
                      +|.+.  +.. ..+.+|++++|.|.+ .+ +.+.+.|++++..+...       ...+|.|.+++.+|+|.|+|.|.|..
T Consensus         5 ~P~i~--~~~-~~v~~g~~v~l~C~~-~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~   79 (96)
T d1l6za2           5 QPFLQ--VTN-TTVKELDSVTLTCLS-ND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPV   79 (96)
T ss_dssp             CCCEE--CSC-SEECTTSCEEEEECC-CC-SSCEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSS
T ss_pred             CCeEE--cCc-eEEeCCCeEEEEEcc-CC-CCCCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCC
Confidence            34454  344 579999999999954 44 45789999999988665       56689999999999999999999988


Q ss_pred             CCeE-EEEEEEEe
Q psy14542         83 DSAQ-MSAQVILG   94 (371)
Q Consensus        83 ~~~~-~~~~l~v~   94 (371)
                      |... ..+.|.|.
T Consensus        80 g~~~S~~~~L~V~   92 (96)
T d1l6za2          80 SVRRSNSIKLDII   92 (96)
T ss_dssp             CCEECCCCEEEEC
T ss_pred             CCeEEEeEEEEEE
Confidence            8764 46888887

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=4.8e-14  Score=96.50  Aligned_cols=68  Identities=28%  Similarity=0.522  Sum_probs=58.4

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------------CeeEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------------SDEVLVLDRVQREDAGMYQCHVSADDDS   84 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   84 (371)
                      ..+.+|+.++|.|.+..+.|.+.+.|+|++..+...                ....|.|.+++.+|+|.|+|.+.|..|.
T Consensus        12 ~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~   91 (104)
T d1nbqa2          12 SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGT   91 (104)
T ss_dssp             SEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSC
T ss_pred             CEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCCc
Confidence            568899999999976678899999999999887554                3467999999999999999999999988


Q ss_pred             eEEE
Q psy14542         85 AQMS   88 (371)
Q Consensus        85 ~~~~   88 (371)
                      ...+
T Consensus        92 ~~~s   95 (104)
T d1nbqa2          92 PMTS   95 (104)
T ss_dssp             CEEC
T ss_pred             eEEE
Confidence            7554

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=8.3e-13  Score=88.56  Aligned_cols=86  Identities=14%  Similarity=0.209  Sum_probs=60.9

Q ss_pred             cceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEe--CCc-ccccCCceE----EecceEEEeccCCCCCeEEEEEEE
Q psy14542        222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYK--QDS-PVEESDRIQ----RIGSSLSISHVEESDSGVWNCVAN  294 (371)
Q Consensus       222 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~--~~~-~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~a~  294 (371)
                      |.|. .+.+.. +..|+++.|.|.+.|.|.|.+.|++  ++. .+.......    ...++|.|.++..+|+|.|+|.|.
T Consensus         3 P~f~-~~~~~~-v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   80 (96)
T d2c9aa1           3 PHFL-RIQNVE-VNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR   80 (96)
T ss_dssp             CEEC-CCCCEE-ECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEE
T ss_pred             Ceec-ccCCEE-EeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEE
Confidence            4554 345555 9999999999999999988755433  222 222222221    123579999999999999999999


Q ss_pred             cCCCCce-eEEEEEEe
Q psy14542        295 NSEGQDK-MQLFIQYA  309 (371)
Q Consensus       295 n~~g~~~-~~~~l~v~  309 (371)
                      |..|... ..+.|.|+
T Consensus        81 N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          81 TEGGVGISNYAELVVK   96 (96)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             eCCCeEEEEEEEEEEC
Confidence            9999864 44677764

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=8.1e-13  Score=89.01  Aligned_cols=68  Identities=22%  Similarity=0.427  Sum_probs=58.5

Q ss_pred             eecCCeEEEEE------EeecCCCCceEEEeCCcccccCC-ceEEecceEEEeccCCCCCeEEEEEEEcCCCCce
Q psy14542        234 VKKDESVILPC------SAQGNPLPTIKWYKQDSPVEESD-RIQRIGSSLSISHVEESDSGVWNCVANNSEGQDK  301 (371)
Q Consensus       234 ~~~g~~~~l~C------~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  301 (371)
                      +..|....|.|      .+.++|.|.+.|++||..+.... ++...++.|.|.++..+|+|.|+|.|.|..|...
T Consensus        11 ~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g~~   85 (103)
T d1iray2          11 LPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQ   85 (103)
T ss_dssp             EESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             EecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECcCCEE
Confidence            78899999999      56788999999999999887654 3446778999999999999999999999887543

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=7.9e-14  Score=95.59  Aligned_cols=84  Identities=24%  Similarity=0.308  Sum_probs=65.8

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------------CeeEEEEccCCcCCC
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------------SDEVLVLDRVQREDA   71 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------------~~~~l~i~~~~~~d~   71 (371)
                      .++.+...++. +.+.+|++++|.|.+ .+.|.+.+.|++++..+...                 ...+|.|.+++.+|+
T Consensus         3 g~v~V~~~~~~-v~v~~g~~v~L~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   80 (105)
T d1nbqa1           3 GSVTVHSSEPE-VRIPENNPVKLSCAY-SGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDT   80 (105)
T ss_dssp             CCCEEECSCSB-CCEETTCCCEEECEE-ESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSC
T ss_pred             CceEEECCCCe-EEEeCCCeEEEEEEe-CCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccce
Confidence            35566666666 889999999999965 57788899999965433322                 235799999999999


Q ss_pred             eEEEEEEEcCCCCeEEEEEEEEe
Q psy14542         72 GMYQCHVSADDDSAQMSAQVILG   94 (371)
Q Consensus        72 G~Y~C~~~~~~~~~~~~~~l~v~   94 (371)
                      |.|+|.+.|..|.....+.|.|.
T Consensus        81 G~Y~C~a~n~~G~~~~~~~v~v~  103 (105)
T d1nbqa1          81 GTYTCMVSEEGGNSYGEVKVKLI  103 (105)
T ss_dssp             SEEEEEEEETTSSCEECCEEECC
T ss_pred             eeEEEEEEECCCCEEEEEEEEEE
Confidence            99999999999988776666543

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.6e-13  Score=91.46  Aligned_cols=79  Identities=18%  Similarity=0.228  Sum_probs=66.0

Q ss_pred             eCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeE
Q psy14542         16 SPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQ   86 (371)
Q Consensus        16 ~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   86 (371)
                      .|.. +.+.+|+.+.|.|.+..+.+.+.|.|+|++..+...         ...+|.|.+++.+|+|.|+|.+.|..|...
T Consensus         8 ~~~~-~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~   86 (101)
T d1iray1           8 EKII-LVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLR   86 (101)
T ss_dssp             CCCC-EEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEEE
T ss_pred             CCcE-EEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeEE
Confidence            4444 778899999999977677889999999987543321         456899999999999999999999999888


Q ss_pred             EEEEEEEec
Q psy14542         87 MSAQVILGG   95 (371)
Q Consensus        87 ~~~~l~v~~   95 (371)
                      ..+.|.|..
T Consensus        87 ~~~~L~V~~   95 (101)
T d1iray1          87 IKISAKFVE   95 (101)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEe
Confidence            889999874

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.1e-13  Score=93.78  Aligned_cols=79  Identities=20%  Similarity=0.281  Sum_probs=62.9

Q ss_pred             EeCCCcEEEeccCcEEEEEEecCCCC---CCeeEEEeCCEEEee--------------C----CeeEEEEccCCcCCCeE
Q psy14542         15 MSPSGQVVVDVGHRIELHCRVSPKRL---SSAKAWLKDGLVLRR--------------N----SDEVLVLDRVQREDAGM   73 (371)
Q Consensus        15 ~~p~~~~~~~~G~~v~l~C~~~~~~~---~~~~~W~~~~~~~~~--------------~----~~~~l~i~~~~~~d~G~   73 (371)
                      ..|.. +.+.+|++++|.|.+. +.|   .+.+.|+|++.....              .    ....|.|.+++.+|+|.
T Consensus         5 ~~P~~-~~v~~G~~v~l~C~v~-g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   82 (113)
T d2dava1           5 EKPQG-GTVKVGEDITFIAKVK-AEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN   82 (113)
T ss_dssp             SCCCC-CEEETTCCEEEEEEEE-CCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred             ECCce-EEEeCCCEEEEEEEEc-cCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeE
Confidence            44566 8999999999999665 444   578999997532110              0    34579999999999999


Q ss_pred             EEEEEEcCCCCeEEEEEEEEec
Q psy14542         74 YQCHVSADDDSAQMSAQVILGG   95 (371)
Q Consensus        74 Y~C~~~~~~~~~~~~~~l~v~~   95 (371)
                      |+|.|.|..|.....+.|.|.+
T Consensus        83 Y~C~a~N~~G~~~~~~~L~V~~  104 (113)
T d2dava1          83 YRCEVTYKDKFDSCSFDLEVHE  104 (113)
T ss_dssp             EEEEEECSSCEEEECCEEEEEC
T ss_pred             EEEEEEeCCCEEEEEEEEEEEc
Confidence            9999999999999899999873

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.38  E-value=1.3e-12  Score=85.15  Aligned_cols=75  Identities=21%  Similarity=0.410  Sum_probs=60.4

Q ss_pred             ccceeeeeeeeeeeecCCeEEEEEEeecCCCC-ceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        221 SAAKMFEKHRILNVKKDESVILPCSAQGNPLP-TIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       221 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      +|.+...+.... +.+|+.++|.|.+.+.|.+ .+.|++||..+...      ++.|.|..+..+|+|.|+|.|.|..++
T Consensus         4 kp~i~~~P~~~~-v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~------~~~l~i~~v~~~dsG~Y~C~a~ns~~S   76 (85)
T d2fcba1           4 KAVLKLEPQWIN-VLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTH------TQPSYRFKANNNDSGEYTCQTGQTSLS   76 (85)
T ss_dssp             BCEEEEESCCSE-EETTCEEEEEEECSSCCCTTCCEEEETTEECTTC------CSSEEEEECCGGGCEEEEEECTTSBCC
T ss_pred             CCEEEECCCCeE-EcCCCeEEEEEEEeeccceeEEEeeccccccccc------ccceEEeeccccCCcEEEEECCCCccc
Confidence            455555555555 9999999999999988776 58999999887654      457999999999999999999987665


Q ss_pred             cee
Q psy14542        300 DKM  302 (371)
Q Consensus       300 ~~~  302 (371)
                      +..
T Consensus        77 ~~v   79 (85)
T d2fcba1          77 DPV   79 (85)
T ss_dssp             CCE
T ss_pred             ccE
Confidence            543

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=3.6e-13  Score=91.56  Aligned_cols=82  Identities=23%  Similarity=0.247  Sum_probs=62.2

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------------CeeEEEEccCCcCCCeE
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------------SDEVLVLDRVQREDAGM   73 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------------~~~~l~i~~~~~~d~G~   73 (371)
                      +.+...+.. +.+.+|++++|.|.+ .+.|.+.+.|++++......                 .+++|.|.+++.+|+|.
T Consensus         2 ~sV~t~~~~-v~v~~G~~v~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~   79 (102)
T d1f97a1           2 GSVYTAQSD-VQVPENESIKLTCTY-SGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGE   79 (102)
T ss_dssp             CEEECSCSE-EEEETTCCEEEECEE-ESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEE
T ss_pred             CCEEccCCc-EEEeCCCEEEEEEEc-CCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEE
Confidence            445555555 889999999999965 46788899999843222111                 34579999999999999


Q ss_pred             EEEEEEcCCCCeEEEEEEEEe
Q psy14542         74 YQCHVSADDDSAQMSAQVILG   94 (371)
Q Consensus        74 Y~C~~~~~~~~~~~~~~l~v~   94 (371)
                      |+|.+.|..|.....+.|.|.
T Consensus        80 Y~C~a~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          80 YTCMVSEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             EEEEEEETTSSSEEEEEEEEE
T ss_pred             EEEEEEECCCCEEEEEEEEEE
Confidence            999999999887766555543

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.37  E-value=3e-13  Score=92.22  Aligned_cols=71  Identities=21%  Similarity=0.342  Sum_probs=59.0

Q ss_pred             eecCCeEEEEEEe-ecCCCCceEEEeCCcccccC--CceE--EecceEEEeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542        234 VKKDESVILPCSA-QGNPLPTIKWYKQDSPVEES--DRIQ--RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL  304 (371)
Q Consensus       234 ~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~--~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  304 (371)
                      +.+|+.+.|.|.+ .+.|.+.+.|++++..+...  .+..  ..++.|.|.++..+|+|.|+|.|.|..|..+.++
T Consensus        16 v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~v   91 (105)
T d1cs6a2          16 ITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSV   91 (105)
T ss_dssp             EETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEE
T ss_pred             EeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEEEE
Confidence            9999999999997 68899999999999866432  2222  2456899999999999999999999999876654

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.9e-13  Score=91.12  Aligned_cols=74  Identities=20%  Similarity=0.256  Sum_probs=57.6

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeEEEEEEEcCCCCeE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGMYQCHVSADDDSAQ   86 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~   86 (371)
                      ..+.+|+++.|.|.+....+.+.+.|+|++..+...              ....|.|.+++.+|+|.|+|.|.|..|...
T Consensus        13 ~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~   92 (104)
T d2aw2a1          13 HSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIE   92 (104)
T ss_dssp             EEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCeEE
Confidence            789999999999976544335899999976543221              234699999999999999999999888653


Q ss_pred             -EEEEEEEe
Q psy14542         87 -MSAQVILG   94 (371)
Q Consensus        87 -~~~~l~v~   94 (371)
                       ..+.|.|.
T Consensus        93 s~~~~l~V~  101 (104)
T d2aw2a1          93 SHSTTLYVT  101 (104)
T ss_dssp             CCCEEEEEE
T ss_pred             EEEEEEEEE
Confidence             46777775

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=9.2e-13  Score=87.71  Aligned_cols=84  Identities=21%  Similarity=0.317  Sum_probs=61.1

Q ss_pred             ccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCC-ceE--Eec--ceEEEeccCCCCCeEEEEEEEc
Q psy14542        221 SAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD-RIQ--RIG--SSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       221 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~--~~~--~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      +|.+.........+..|+.+.|.|.+. .|.+.+.|+++|..+..+. ++.  ..+  ..|.|.++..+|+|.|+|.|.|
T Consensus         5 ~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n   83 (94)
T d1pd6a_           5 STAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG   83 (94)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT
T ss_pred             CCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEee
Confidence            344444433322289999999999985 5889999999999887653 333  222  3699999999999999999966


Q ss_pred             CCCCceeEEEEEEe
Q psy14542        296 SEGQDKMQLFIQYA  309 (371)
Q Consensus       296 ~~g~~~~~~~l~v~  309 (371)
                      .    ..++.|.|.
T Consensus        84 ~----~~s~~l~V~   93 (94)
T d1pd6a_          84 E----KCSTELFVK   93 (94)
T ss_dssp             E----EECCEEEEE
T ss_pred             E----EEEEEEEEE
Confidence            3    444556654

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=8.9e-13  Score=85.19  Aligned_cols=78  Identities=23%  Similarity=0.391  Sum_probs=57.8

Q ss_pred             cceeeeeeeeeeeecCCeEEEEEEeecCCCCc-eEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPT-IKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       222 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      |.+...+.... +.+|+.++|.|.+.+.|.+. +.|++++..+...      +..|.|.++..+|+|.|+|.|.|..+.+
T Consensus         2 P~It~~P~~~~-v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~------~~~l~i~~v~~~d~G~Y~C~a~~s~~S~   74 (82)
T d1f2qa1           2 PKVSLNPPWNR-IFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET------NSSLNIVNAKFEDSGEYKCQHQQVNESE   74 (82)
T ss_dssp             CCCEEESSCSE-EETTCCEEEECCTTCC----CCEEEETTEECSCC------SSEEEECSCCGGGCEEEEEECTTSSCCC
T ss_pred             CEEEEcCCCeE-EeCCCeEEEEEEEeeeeeecceeeeeeeeeeecc------cceeEECCCChhhCCcEEEEecCCCCcc
Confidence            55566665555 89999999999999988875 6778888766543      4679999999999999999999876654


Q ss_pred             eeEEEEEE
Q psy14542        301 KMQLFIQY  308 (371)
Q Consensus       301 ~~~~~l~v  308 (371)
                      .  +.|.|
T Consensus        75 ~--v~l~V   80 (82)
T d1f2qa1          75 P--VYLEV   80 (82)
T ss_dssp             C--EEEEE
T ss_pred             c--EEEEE
Confidence            3  45554

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3e-12  Score=85.18  Aligned_cols=77  Identities=21%  Similarity=0.423  Sum_probs=59.1

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQCHVSAD   81 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~~~~   81 (371)
                      .+.........+.+|+++.|.|.+ + .|.+.+.|++||..+..+          ....|.|.+++.+|+|.|+|.|.| 
T Consensus         7 ~f~~~l~~~~~v~~G~~v~l~c~v-~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n-   83 (94)
T d1pd6a_           7 AFQKKLEPAYQVSKGHKIRLTVEL-A-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG-   83 (94)
T ss_dssp             SCSEECCSEEEEETTSCEEEEEEC-S-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT-
T ss_pred             cEEEeCCCCEEECcCCeEEEEEEE-C-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEee-
Confidence            333333332679999999999975 3 477889999999988654          567899999999999999999955 


Q ss_pred             CCCeEEEEEEEEe
Q psy14542         82 DDSAQMSAQVILG   94 (371)
Q Consensus        82 ~~~~~~~~~l~v~   94 (371)
                         ...+..|.|.
T Consensus        84 ---~~~s~~l~V~   93 (94)
T d1pd6a_          84 ---EKCSTELFVK   93 (94)
T ss_dssp             ---EEECCEEEEE
T ss_pred             ---EEEEEEEEEE
Confidence               4555566664

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=6e-14  Score=90.84  Aligned_cols=72  Identities=17%  Similarity=0.105  Sum_probs=60.8

Q ss_pred             CCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILG   94 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   94 (371)
                      |.. ..+.+|+.+.|.| ...+.|.+.+.|+|++..+...    +.+.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus        11 p~~-~~~~~G~~~~l~C-~a~G~P~P~v~W~k~g~~~~~~----~~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~   82 (84)
T d2oz4a3          11 PGN-WTWPENSQQTPMC-QAWGNPLPELKCLKDGTFPLPI----GESVTVTRDLEGTYLCRARSTQGEVTREVTVNVL   82 (84)
T ss_dssp             CSE-EEEETTCEECCCC-CCEEESCCEEEEEETTTEECCT----TSCEECCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             Ccc-EEEeCCCEEEEEE-EEeEcCccEEEEEEeeccceee----eeeeccccCCCCEEEEEEEcCCCEEEEEEEEEEE
Confidence            444 7899999999999 5678899999999998877642    2345788999999999999999988888888886

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.2e-12  Score=86.38  Aligned_cols=77  Identities=14%  Similarity=0.244  Sum_probs=59.6

Q ss_pred             eeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCc--eE--Eec--ceEEEeccCCCCCeEEEEEEEcCCCCce
Q psy14542        228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDR--IQ--RIG--SSLSISHVEESDSGVWNCVANNSEGQDK  301 (371)
Q Consensus       228 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~--~~--~~~--~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  301 (371)
                      +.+.. +..|+++.|.|.+. .|.+.+.|++++..+..+.+  +.  ..+  .+|.|.++..+|+|.|+|.|.|.    .
T Consensus         7 l~~~~-v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~----~   80 (90)
T d1x44a1           7 LEDTT-AYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGG----Q   80 (90)
T ss_dssp             CCCEE-EETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTE----E
T ss_pred             CCCEE-EeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecc----e
Confidence            34444 99999999999984 68889999999998766543  33  222  37999999999999999999763    4


Q ss_pred             eEEEEEEec
Q psy14542        302 MQLFIQYAH  310 (371)
Q Consensus       302 ~~~~l~v~~  310 (371)
                      .++.|.|..
T Consensus        81 ~~a~l~V~~   89 (90)
T d1x44a1          81 SSAKLSVDL   89 (90)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEE
Confidence            556676654

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.35  E-value=1.6e-12  Score=84.45  Aligned_cols=75  Identities=27%  Similarity=0.408  Sum_probs=59.4

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCc-eEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT-IKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEG  298 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  298 (371)
                      .+|.+...+.... +.+|++++|.|.+.+.|.+. +.|++++..+...      +.+|.|.++..+|+|.|+|.|.|..+
T Consensus         4 Pkpvi~~~P~~~~-v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~a~~s~~   76 (84)
T d1fnla1           4 PKAVVFLEPQWYS-VLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ------ASSYFIDAATVNDSGEYRCQTNLSTL   76 (84)
T ss_dssp             CCCEEEEESCCSE-EETTCCEEEEEECCCBTTBCCCEEEETTEEEESS------CSEEEESSCCGGGCEEEEEECSSSCC
T ss_pred             CCCEEEECCCCcE-EeCCCeEEEEEEeccCCCCeEEEEeeeceeeeec------ceeeEecCCcccCCEEEEEEccCCCc
Confidence            4566666666666 99999999999999888775 6777877665433      46799999999999999999988665


Q ss_pred             Cce
Q psy14542        299 QDK  301 (371)
Q Consensus       299 ~~~  301 (371)
                      +..
T Consensus        77 S~~   79 (84)
T d1fnla1          77 SDP   79 (84)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            543

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.8e-12  Score=83.96  Aligned_cols=71  Identities=24%  Similarity=0.457  Sum_probs=57.6

Q ss_pred             CCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQCHVSADDDSA   85 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   85 (371)
                      +.+ ..+.+|+.+.|.|.+.  .|.+.+.|++++..+..+           ...+|.|.+++.+|+|.|+|.+.|    .
T Consensus         7 l~~-~~v~~G~~v~l~C~v~--~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~   79 (90)
T d1x44a1           7 LED-TTAYCGERVELECEVS--EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----G   79 (90)
T ss_dssp             CCC-EEEETTEEEEEEEECS--SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----E
T ss_pred             CCC-EEEeCCCcEEEEEEEC--CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec----c
Confidence            444 8999999999999763  477889999999887654           456899999999999999999965    3


Q ss_pred             EEEEEEEEe
Q psy14542         86 QMSAQVILG   94 (371)
Q Consensus        86 ~~~~~l~v~   94 (371)
                      ..+..|.|.
T Consensus        80 ~~~a~l~V~   88 (90)
T d1x44a1          80 QSSAKLSVD   88 (90)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEEE
Confidence            556666664

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=9.8e-14  Score=96.81  Aligned_cols=92  Identities=21%  Similarity=0.295  Sum_probs=71.4

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCC-CCceEEEeCCcccccCC--ceEE--------ecceEEEeccCCCC-Ce
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNP-LPTIKWYKQDSPVEESD--RIQR--------IGSSLSISHVEESD-SG  287 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~~~~~~~~~~--~~~~--------~~~~l~i~~~~~~d-~G  287 (371)
                      .||.+. .+.... +..|+.+.|.|.+.+.+ .+.+.|++++..+....  ++..        ..+.|.|.++..+| +|
T Consensus         6 ~Pp~i~-~~~~~~-~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G   83 (115)
T d2crya1           6 GPPIIS-STQTQH-ALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQT   83 (115)
T ss_dssp             SSCCEE-EECCCC-CCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHS
T ss_pred             cCCEEe-cCCCEE-EecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCe
Confidence            566664 344455 88999999999999854 55799999998776542  2221        11369999999998 79


Q ss_pred             EEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542        288 VWNCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       288 ~Y~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      .|+|.|.|..|.++..+.|.|...+.
T Consensus        84 ~Y~C~A~N~~G~~~~~~~L~V~~~~~  109 (115)
T d2crya1          84 IYNCTAWNSFGSDTEIIRLKEQGSEM  109 (115)
T ss_dssp             CEEEEEECSSCEEEEEECCCCSCSSC
T ss_pred             EEEEEEEECCCeEEEEEEEEEECCCC
Confidence            99999999999999999998876554

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.32  E-value=7.1e-13  Score=89.03  Aligned_cols=80  Identities=21%  Similarity=0.460  Sum_probs=63.9

Q ss_pred             cceEEEeCCCcEEEecc---CcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEE
Q psy14542         10 SLSIEMSPSGQVVVDVG---HRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHV   78 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G---~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~   78 (371)
                      +|.+...|.. ..+.+|   ++++|.|.+ .+.|.+.+.|++||..+...        ....|.|..++.+|+|.|+|.|
T Consensus         4 ~P~f~~~P~~-~~~~~g~~~~~v~l~C~~-~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a   81 (97)
T d1cs6a1           4 GPVFEEQPAH-TLFPEGSAEEKVTLTCRA-RANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVA   81 (97)
T ss_dssp             EEEEEECCCC-EEEETTCSCCEEEECCEE-EEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEE
T ss_pred             CCEEEEeCCC-EEEECccCCCeEEEEEEE-EEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEE
Confidence            5677788887 777666   789999954 57788999999999988655        5567888999999999999999


Q ss_pred             EcCCCCe-EEEEEE
Q psy14542         79 SADDDSA-QMSAQV   91 (371)
Q Consensus        79 ~~~~~~~-~~~~~l   91 (371)
                      .|..|.. +..+.|
T Consensus        82 ~N~~G~~~S~~a~L   95 (97)
T d1cs6a1          82 TNARGTVVSREASL   95 (97)
T ss_dssp             EETTEEEECCCEEE
T ss_pred             EECCCEEEEEEEEE
Confidence            9998864 234444

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.4e-12  Score=85.01  Aligned_cols=72  Identities=19%  Similarity=0.272  Sum_probs=57.6

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL   93 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v   93 (371)
                      ..+.+|+++.|.|.+ .+ +.+.+.|+++|..+...       .+++|.|.+++.+|+|.|+|.|.|..+.......|.+
T Consensus         7 ~~~~~G~~~~l~C~~-~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l~~   84 (92)
T d1olza1           7 HFFKHGGTAELKCSQ-KS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAK   84 (92)
T ss_dssp             EEEETTSCEEECCCC-SC-TTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEEEE
T ss_pred             eeEeCCCEEEEEEEe-ec-cCCceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEEEEEE
Confidence            579999999999954 44 56789999998877654       5568999999999999999999998776654444443


Q ss_pred             e
Q psy14542         94 G   94 (371)
Q Consensus        94 ~   94 (371)
                      .
T Consensus        85 ~   85 (92)
T d1olza1          85 H   85 (92)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.4e-12  Score=86.89  Aligned_cols=81  Identities=22%  Similarity=0.345  Sum_probs=63.8

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------------------CeeEEEEccCCcC
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------------------~~~~l~i~~~~~~   69 (371)
                      |.+...+...+.+..|+++.|.|.+ .+.|.+.+.|+++|..+...                     ....|.|.+++.+
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v-~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   80 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNV-TGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR   80 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEE-EECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEe-ccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchH
Confidence            4444433333667889999999955 56788999999998876533                     2357999999999


Q ss_pred             CCe-EEEEEEEcCCCCeEEEEEEE
Q psy14542         70 DAG-MYQCHVSADDDSAQMSAQVI   92 (371)
Q Consensus        70 d~G-~Y~C~~~~~~~~~~~~~~l~   92 (371)
                      |.| .|+|.|.|..|.....+.|.
T Consensus        81 D~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          81 FYKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GGSSCEEEEEECSSCEEEEEEEEE
T ss_pred             HCCcEEEEEEEeCCCeEEEEEEEE
Confidence            999 59999999999888777775

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.1e-13  Score=95.09  Aligned_cols=88  Identities=16%  Similarity=0.196  Sum_probs=70.6

Q ss_pred             EEecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------------CeeEEEEccCCcC
Q psy14542          5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------------SDEVLVLDRVQRE   69 (371)
Q Consensus         5 ~~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------------~~~~l~i~~~~~~   69 (371)
                      |+|..+|.+.. +.. ..+.+|+.+.|.|.+....|.+.+.|++++..+...               ....|.|.+++.+
T Consensus         2 L~V~~Pp~i~~-~~~-~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~   79 (115)
T d2crya1           2 LTVNGPPIISS-TQT-QHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRA   79 (115)
T ss_dssp             CCCCSSCCEEE-ECC-CCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHH
T ss_pred             eEEecCCEEec-CCC-EEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchh
Confidence            44555666654 445 678999999999977666677789999988877543               1246999999999


Q ss_pred             C-CeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542         70 D-AGMYQCHVSADDDSAQMSAQVILG   94 (371)
Q Consensus        70 d-~G~Y~C~~~~~~~~~~~~~~l~v~   94 (371)
                      | +|.|+|.|.|..|.....+.|.|.
T Consensus        80 D~~G~Y~C~A~N~~G~~~~~~~L~V~  105 (115)
T d2crya1          80 DFQTIYNCTAWNSFGSDTEIIRLKEQ  105 (115)
T ss_dssp             HHHSCEEEEEECSSCEEEEEECCCCS
T ss_pred             cCCeEEEEEEEECCCeEEEEEEEEEE
Confidence            9 699999999999999999988886

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.6e-12  Score=86.73  Aligned_cols=81  Identities=14%  Similarity=0.142  Sum_probs=59.9

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCC--CCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEEEEE
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRL--SSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQCHVS   79 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~--~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~~   79 (371)
                      +.+.+.. ..+.+|+.++|.|.+..+.|  .+.+.|+|+++.+...           ....|.|.....+|.|.|+|+|.
T Consensus         5 v~i~~~p-~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~   83 (106)
T d1zxqa1           5 VILTLQP-TLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAV   83 (106)
T ss_dssp             CEEEEES-SEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEE
T ss_pred             CEecCCC-CEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEE
Confidence            3334444 46999999999998877664  4479999999988754           23467777777788889999999


Q ss_pred             cCCCCeEEEEEEEEe
Q psy14542         80 ADDDSAQMSAQVILG   94 (371)
Q Consensus        80 ~~~~~~~~~~~l~v~   94 (371)
                      |..+.....+.+.+.
T Consensus        84 n~~~~~~~~~~~~~s   98 (106)
T d1zxqa1          84 LDLMSRGGNIFHKHS   98 (106)
T ss_dssp             EECGGGTCCEEEEEC
T ss_pred             ecCCCCCCeeEeccc
Confidence            887655445555554

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=5e-12  Score=85.60  Aligned_cols=70  Identities=14%  Similarity=0.190  Sum_probs=60.9

Q ss_pred             eccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEE
Q psy14542         24 DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSA   89 (371)
Q Consensus        24 ~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   89 (371)
                      ..++...|.|. ..+.|.+.+.|+++|..+..+              ....|.|.+++..|+|.|+|.|.|..|.....+
T Consensus        14 ~~~~~~~i~~~-v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   92 (103)
T d1wwbx_          14 TSDHHWCIPFT-VKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQI   92 (103)
T ss_dssp             CCCCEEEEEEE-EECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             ccceeEEEEEE-EEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEE
Confidence            36777889995 478899999999999998754              235799999999999999999999999999999


Q ss_pred             EEEEe
Q psy14542         90 QVILG   94 (371)
Q Consensus        90 ~l~v~   94 (371)
                      .|.|.
T Consensus        93 ~v~V~   97 (103)
T d1wwbx_          93 SAHFM   97 (103)
T ss_dssp             EECCS
T ss_pred             EEEEE
Confidence            99887

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.28  E-value=5.8e-13  Score=87.60  Aligned_cols=75  Identities=15%  Similarity=0.138  Sum_probs=60.9

Q ss_pred             eeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe----cceEEEeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542        229 HRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVANNSEGQDKMQL  304 (371)
Q Consensus       229 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  304 (371)
                      .+.. +.+|+++.|.|.+ +.|.+.+.|++||..+..+.++...    ..+|.|.++..+|+|.|+|.|.|..+    ++
T Consensus         9 ~d~~-v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~----sa   82 (89)
T d1tiua_           9 YGVE-VFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKS----AA   82 (89)
T ss_dssp             CCEE-EETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBC----CE
T ss_pred             cCEE-EeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceEE----EE
Confidence            3445 8999999999997 5788999999999999888877632    23799999999999999999977543    45


Q ss_pred             EEEEe
Q psy14542        305 FIQYA  309 (371)
Q Consensus       305 ~l~v~  309 (371)
                      .|.|.
T Consensus        83 ~l~V~   87 (89)
T d1tiua_          83 NLKVK   87 (89)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            56654

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.6e-12  Score=87.47  Aligned_cols=77  Identities=12%  Similarity=0.169  Sum_probs=58.9

Q ss_pred             eecCCeEEEEEEeec-CC--CCceEEEeCCcccccCCceE------EecceEEEeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542        234 VKKDESVILPCSAQG-NP--LPTIKWYKQDSPVEESDRIQ------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL  304 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~-~p--~~~v~W~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  304 (371)
                      +.+|+.++|.|.+.| +|  .++++|++++..+.......      .....|.|.....+|+|+|+|+|.|..|.....+
T Consensus        14 v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~~~~~   93 (106)
T d1zxqa1          14 VAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGGNI   93 (106)
T ss_dssp             ECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGGTCCE
T ss_pred             EeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCCCCee
Confidence            889999999999986 44  34799999998775432221      1123578888888899999999999998877777


Q ss_pred             EEEEec
Q psy14542        305 FIQYAH  310 (371)
Q Consensus       305 ~l~v~~  310 (371)
                      .+.+..
T Consensus        94 ~~~~s~   99 (106)
T d1zxqa1          94 FHKHSA   99 (106)
T ss_dssp             EEEECC
T ss_pred             EecccC
Confidence            666654

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=5.4e-12  Score=85.96  Aligned_cols=69  Identities=14%  Similarity=0.185  Sum_probs=57.6

Q ss_pred             ccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEE
Q psy14542         25 VGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV   91 (371)
Q Consensus        25 ~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l   91 (371)
                      .+....|.|. ..+.|.+.+.|++||..+...             ....|.|.+++.+|+|.|+|.|.|..|....++.|
T Consensus        16 ~~~~~~i~~~-v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v   94 (105)
T d1wwca_          16 LRLEHCIEFV-VRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTING   94 (105)
T ss_dssp             CCCEEEEEEE-EECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEEEE-EEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEE
Confidence            3444567884 467899999999999987654             34569999999999999999999999999999998


Q ss_pred             EEe
Q psy14542         92 ILG   94 (371)
Q Consensus        92 ~v~   94 (371)
                      .|.
T Consensus        95 ~V~   97 (105)
T d1wwca_          95 HFL   97 (105)
T ss_dssp             CCS
T ss_pred             EEE
Confidence            887

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=5e-12  Score=84.64  Aligned_cols=82  Identities=15%  Similarity=0.189  Sum_probs=57.9

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe---CCEEEeeC---------CeeEEEEccCCcCCCeEEEEE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK---DGLVLRRN---------SDEVLVLDRVQREDAGMYQCH   77 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~---~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~   77 (371)
                      .|++. .+.+ +.+.+|+++.|.|.+ .+.|.+.+.|++   ++..+...         ...+|.|.+++.+|+|.|+|.
T Consensus         2 ~P~f~-~~~~-~~v~~G~~v~l~C~~-~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   78 (96)
T d2c9aa1           2 TPHFL-RIQN-VEVNAGQFATFQCSA-IGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCM   78 (96)
T ss_dssp             SCEEC-CCCC-EEECSSSCEEEEEEE-ESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEE
T ss_pred             cCeec-ccCC-EEEeCCCEEEEEEEE-eecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEE
Confidence            35564 5777 999999999999954 455655544322   22222111         346799999999999999999


Q ss_pred             EEcCCCCeE-EEEEEEEe
Q psy14542         78 VSADDDSAQ-MSAQVILG   94 (371)
Q Consensus        78 ~~~~~~~~~-~~~~l~v~   94 (371)
                      +.|..|... ....|.|.
T Consensus        79 a~N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          79 IRTEGGVGISNYAELVVK   96 (96)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEeCCCeEEEEEEEEEEC
Confidence            999998764 44677763

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=4.3e-12  Score=86.58  Aligned_cols=74  Identities=18%  Similarity=0.230  Sum_probs=60.1

Q ss_pred             EEEeccCcEEEEEE--ecCCCCCCeeEEEeCCEEEeeC----------------CeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542         21 VVVDVGHRIELHCR--VSPKRLSSAKAWLKDGLVLRRN----------------SDEVLVLDRVQREDAGMYQCHVSADD   82 (371)
Q Consensus        21 ~~~~~G~~v~l~C~--~~~~~~~~~~~W~~~~~~~~~~----------------~~~~l~i~~~~~~d~G~Y~C~~~~~~   82 (371)
                      +.+.+|....+.|-  ...+.|.+.+.|++||..+...                ....|.|.++..+|+|.|+|.|.|..
T Consensus         7 ~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~   86 (107)
T d1he7a_           7 VQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPF   86 (107)
T ss_dssp             CCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETT
T ss_pred             eEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCC
Confidence            55656666655541  4568899999999999987654                23569999999999999999999999


Q ss_pred             CCeEEEEEEEEe
Q psy14542         83 DSAQMSAQVILG   94 (371)
Q Consensus        83 ~~~~~~~~l~v~   94 (371)
                      |.....+.|.|.
T Consensus        87 G~~~~~i~v~v~   98 (107)
T d1he7a_          87 GQASASIMAAFM   98 (107)
T ss_dssp             EEEEEEEEECCC
T ss_pred             CEEEEEEEEEEE
Confidence            999999999887

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.24  E-value=6.6e-12  Score=85.98  Aligned_cols=76  Identities=21%  Similarity=0.314  Sum_probs=60.5

Q ss_pred             eecCCeEEEEEEe-ecCCCCceEEEeCCcccccCCc-------eE-EecceEEEeccCCCCCe---EEEEEEEcCCCCce
Q psy14542        234 VKKDESVILPCSA-QGNPLPTIKWYKQDSPVEESDR-------IQ-RIGSSLSISHVEESDSG---VWNCVANNSEGQDK  301 (371)
Q Consensus       234 ~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~-------~~-~~~~~l~i~~~~~~d~G---~Y~C~a~n~~g~~~  301 (371)
                      +.+|+.+.|.|.+ .|.|.|.+.|++++..+.....       +. ..+++|.|.+++.+|+|   .|.|.|.|..|...
T Consensus        14 ~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~~   93 (111)
T d1biha2          14 PIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEE   93 (111)
T ss_dssp             CBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSC
T ss_pred             ccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCCce
Confidence            7789999999996 8999999999998876543321       22 34578999999988877   79999999999987


Q ss_pred             eEEEEEEe
Q psy14542        302 MQLFIQYA  309 (371)
Q Consensus       302 ~~~~l~v~  309 (371)
                      ..+.+.+.
T Consensus        94 ~~~~~~~i  101 (111)
T d1biha2          94 VVLVEYEI  101 (111)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            76655443

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.7e-11  Score=82.36  Aligned_cols=68  Identities=22%  Similarity=0.271  Sum_probs=55.9

Q ss_pred             EEEeccCcEEEEEE-----ecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEE
Q psy14542         21 VVVDVGHRIELHCR-----VSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMS   88 (371)
Q Consensus        21 ~~~~~G~~v~l~C~-----~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~   88 (371)
                      ..+..|....|.|.     ...+.|.+.+.|++||..+...      .+..|.|.+++.+|+|.|+|.|.|..+....+
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g~~~~   87 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYP   87 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECcCCEEEE
Confidence            45889999999994     2357788999999999998654      44689999999999999999999877655433

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.23  E-value=1.3e-12  Score=85.95  Aligned_cols=73  Identities=18%  Similarity=0.231  Sum_probs=58.0

Q ss_pred             EeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542         15 MSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSA   85 (371)
Q Consensus        15 ~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~   85 (371)
                      ..+.+ +.+.+|+++.|.|.+  +.|.+.+.|+|||..+...         ...+|.|.+++.+|+|.|+|.+.+..   
T Consensus         6 ~~l~d-~~v~~G~~~~~~c~v--s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~---   79 (89)
T d1tiua_           6 KPLYG-VEVFVGETAHFEIEL--SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAK---   79 (89)
T ss_dssp             BCCCC-EEEETTSCCCEEEBC--SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCB---
T ss_pred             cCCcC-EEEeCCCcEEEEEEE--CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceE---
Confidence            33455 899999999999965  3577899999999887655         56789999999999999999986643   


Q ss_pred             EEEEEEEEe
Q psy14542         86 QMSAQVILG   94 (371)
Q Consensus        86 ~~~~~l~v~   94 (371)
                       .+..|.|.
T Consensus        80 -~sa~l~V~   87 (89)
T d1tiua_          80 -SAANLKVK   87 (89)
T ss_dssp             -CCEEEEEE
T ss_pred             -EEEEEEEE
Confidence             34555554

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=3.2e-11  Score=85.30  Aligned_cols=78  Identities=22%  Similarity=0.439  Sum_probs=58.9

Q ss_pred             CCCcEEEeccCcEEEEEEecC--CCCCCeeEEEeCCEEE-----eeC------------------------CeeEEEEcc
Q psy14542         17 PSGQVVVDVGHRIELHCRVSP--KRLSSAKAWLKDGLVL-----RRN------------------------SDEVLVLDR   65 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~--~~~~~~~~W~~~~~~~-----~~~------------------------~~~~l~i~~   65 (371)
                      |..++.+.+|++++|.|.+..  ......+.|++.+...     ...                        .+.+|.|.+
T Consensus         8 p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~   87 (126)
T d1pkoa_           8 PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQN   87 (126)
T ss_dssp             CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESS
T ss_pred             CCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEE
Confidence            333489999999999997643  2334568999854311     001                        367999999


Q ss_pred             CCcCCCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542         66 VQREDAGMYQCHVSADDDSAQMSAQVILG   94 (371)
Q Consensus        66 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   94 (371)
                      ++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus        88 v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~  116 (126)
T d1pkoa_          88 VRFSDEGGYTCFFRDHSYQEEAAVELKVE  116 (126)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EchhHCeEEEEEEEECCCEEEEEEEEEEe
Confidence            99999999999999887777888889988

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=7.5e-11  Score=78.63  Aligned_cols=74  Identities=16%  Similarity=0.255  Sum_probs=58.3

Q ss_pred             EEEeccCcEEEEEEecCCC-CCCeeEEEeCCEEEeeC----------------CeeEEEEccCCcCCCeEEEEEEEcCCC
Q psy14542         21 VVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRN----------------SDEVLVLDRVQREDAGMYQCHVSADDD   83 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~~~~~~~----------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~   83 (371)
                      +....|++|+|.|...... ....|.|++++..+..-                .+++|.|.+++.+|+|.|+|.+.+..|
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g   84 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG   84 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCC
Confidence            5778899999999433222 23469999998876432                567899999999999999999998888


Q ss_pred             Ce--EEEEEEEEe
Q psy14542         84 SA--QMSAQVILG   94 (371)
Q Consensus        84 ~~--~~~~~l~v~   94 (371)
                      ..  ..++.|.|.
T Consensus        85 ~~~~~~~~~L~V~   97 (98)
T d1hnga1          85 TRILNKALDLRIL   97 (98)
T ss_dssp             CEEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEEE
Confidence            76  567778776

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=5.4e-11  Score=78.96  Aligned_cols=69  Identities=12%  Similarity=0.086  Sum_probs=54.3

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------------------CeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------------------SDEVLVLDRVQREDAGMYQCHVSAD   81 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------------------~~~~l~i~~~~~~d~G~Y~C~~~~~   81 (371)
                      +....|++|+|.|..  ..|...+.|++++..+...                   .+++|.|.+++.+|+|.|.|.+.+.
T Consensus         5 v~~~~G~sVtl~c~~--~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~   82 (93)
T d1ccza1           5 IYGVVYGNVTFHVPS--NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (93)
T ss_dssp             EEEETTCCEEECCCC--SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEECCCEEEEecC--CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC
Confidence            688999999999953  3577889999998776432                   4568999999999999999999876


Q ss_pred             CCCeEEEEEEEE
Q psy14542         82 DDSAQMSAQVIL   93 (371)
Q Consensus        82 ~~~~~~~~~l~v   93 (371)
                      .+..  .+.|.|
T Consensus        83 ~~t~--~~~l~V   92 (93)
T d1ccza1          83 TDTM--KFFLYV   92 (93)
T ss_dssp             CSCE--EEEEEE
T ss_pred             CcEE--EEEEEE
Confidence            5544  455544

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.08  E-value=9.2e-12  Score=85.26  Aligned_cols=73  Identities=18%  Similarity=0.179  Sum_probs=58.1

Q ss_pred             EEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------------CeeEEEEccCCcCCCe---EEEEEEEcCCCCe
Q psy14542         22 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------------SDEVLVLDRVQREDAG---MYQCHVSADDDSA   85 (371)
Q Consensus        22 ~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------------~~~~l~i~~~~~~d~G---~Y~C~~~~~~~~~   85 (371)
                      .+.+|+++.|.|.+..+.|.+.+.|+|++..+...             .+.+|.|.+++.+|+|   .|.|.|.|..|..
T Consensus        13 t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~   92 (111)
T d1biha2          13 TPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDE   92 (111)
T ss_dssp             CCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSS
T ss_pred             cccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCCc
Confidence            46789999999976678999999999975443221             4568999999999877   7999999999888


Q ss_pred             EEEEEEEEe
Q psy14542         86 QMSAQVILG   94 (371)
Q Consensus        86 ~~~~~l~v~   94 (371)
                      ...+.+.+.
T Consensus        93 ~~~~~~~~i  101 (111)
T d1biha2          93 EVVLVEYEI  101 (111)
T ss_dssp             CEEEEEEEE
T ss_pred             eEEEEEEEe
Confidence            766555444

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.2e-09  Score=72.06  Aligned_cols=82  Identities=11%  Similarity=0.137  Sum_probs=61.4

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEEEc
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHVSA   80 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~   80 (371)
                      ++|.|.+.|..  .|..|++|+|.|..  ......+.|+|+|......        ....|.|.+++..|+|.|+|...+
T Consensus         3 PKPsLsa~P~~--~V~~G~~VTL~C~~--~~~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (95)
T d1olla1           3 PKPFIWAEPHF--MVPKEKQVTICCQG--NYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRV   78 (95)
T ss_dssp             CCCEEEEESCS--EEETTCCEEEEEEC--CTTCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeeCCC--cccCCCcEEEEEec--CCCccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCC
Confidence            57899999987  68899999999963  3446779999998754321        446899999999999999999876


Q ss_pred             CCCC--eEEEEEEEEe
Q psy14542         81 DDDS--AQMSAQVILG   94 (371)
Q Consensus        81 ~~~~--~~~~~~l~v~   94 (371)
                      ....  .+..+.|.|.
T Consensus        79 ~~~~S~~Sd~leL~VT   94 (95)
T d1olla1          79 GELWSEPSNLLDLVVT   94 (95)
T ss_dssp             TTEECCCCCCEEEEEE
T ss_pred             CCCccCCCCCEEEEEe
Confidence            4321  2344555553

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=9.8e-11  Score=79.37  Aligned_cols=78  Identities=21%  Similarity=0.320  Sum_probs=54.7

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEE-----Ee-eC-------------------CeeEEEEccC
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLV-----LR-RN-------------------SDEVLVLDRV   66 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~-----~~-~~-------------------~~~~l~i~~~   66 (371)
                      +|...|..   +.+|++|.|.|...++ ....+.|+|+...     +. ..                   .+++|.|.++
T Consensus         3 ti~~~P~~---v~~G~~V~L~c~~~p~-~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v   78 (107)
T d1l6za1           3 TIEAVPPQ---VAEDNNVLLLVHNLPL-ALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMI   78 (107)
T ss_dssp             EEEEESSS---CCTTCCEEEEEESCCT-TCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSC
T ss_pred             EEEEcCCc---ccCCCCEEEEecCCCC-CceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCC
Confidence            44555554   7799999999965443 3567999984321     10 00                   6678999999


Q ss_pred             CcCCCeEEEEEEEcCCC-CeEEEEEEEE
Q psy14542         67 QREDAGMYQCHVSADDD-SAQMSAQVIL   93 (371)
Q Consensus        67 ~~~d~G~Y~C~~~~~~~-~~~~~~~l~v   93 (371)
                      +.+|+|.|+|.+.+..+ ....++.|.|
T Consensus        79 ~~~D~G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          79 TMKDMGVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             CGGGCEEEEEEEEETTEEECCCCEEECC
T ss_pred             CchhCEEEEEEEEECCCCEEEEEEEEEE
Confidence            99999999999987653 3345566654

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=3.4e-10  Score=74.94  Aligned_cols=72  Identities=24%  Similarity=0.351  Sum_probs=54.0

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCccccc------------CCceE--EecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEE------------SDRIQ--RIGSSLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~------------~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      ...|++++|.|... .|.+.+.|++++..+..            ..+..  ..+++|.|.+++.+|+|.|+|.+.|..+.
T Consensus         7 ~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~~~t   85 (93)
T d1ccza1           7 GVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDT   85 (93)
T ss_dssp             EETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCCSC
T ss_pred             EEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECCCcE
Confidence            78999999999864 67889999998865421            11222  12457999999999999999999987765


Q ss_pred             ceeEEEEEE
Q psy14542        300 DKMQLFIQY  308 (371)
Q Consensus       300 ~~~~~~l~v  308 (371)
                      ..  +.|.|
T Consensus        86 ~~--~~l~V   92 (93)
T d1ccza1          86 MK--FFLYV   92 (93)
T ss_dssp             EE--EEEEE
T ss_pred             EE--EEEEE
Confidence            54  44544

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.3e-09  Score=72.70  Aligned_cols=72  Identities=18%  Similarity=0.254  Sum_probs=55.1

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEE--EeeC--------CeeEEEEccCCcCCCeEEEEE
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLV--LRRN--------SDEVLVLDRVQREDAGMYQCH   77 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~--~~~~--------~~~~l~i~~~~~~d~G~Y~C~   77 (371)
                      -++|.|.+.|..  .|..|++|+|.|..  ..+...+.|+|+|..  ....        ....+.|.+++..|+|.|+|.
T Consensus         5 lpkPsLsa~P~~--~V~~G~~VTL~C~~--~~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~   80 (99)
T d1ucta1           5 FPMPFISAKSSP--VIPLDGSVKIQCQA--IREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQ   80 (99)
T ss_dssp             SCCCCEEESSCS--EEETTCCEEEEECC--CTTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEE
T ss_pred             CCCCEEEecCCC--ceeCCCeEEEEEcC--CCCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEE
Confidence            357899999976  68899999999953  345678999986532  1111        345799999999999999999


Q ss_pred             EEcCCC
Q psy14542         78 VSADDD   83 (371)
Q Consensus        78 ~~~~~~   83 (371)
                      ..+...
T Consensus        81 y~~~~~   86 (99)
T d1ucta1          81 YRIGHY   86 (99)
T ss_dssp             EEETTT
T ss_pred             EECCCc
Confidence            887543

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.92  E-value=1.8e-09  Score=71.79  Aligned_cols=76  Identities=17%  Similarity=0.284  Sum_probs=56.2

Q ss_pred             eecCCeEEEEEEee-cCC-CCceEEEeCCccccc----------CCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        234 VKKDESVILPCSAQ-GNP-LPTIKWYKQDSPVEE----------SDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       234 ~~~g~~~~l~C~~~-~~p-~~~v~W~~~~~~~~~----------~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      ...|++++|.|... ... ...|.|++++..+..          ..+.. ..+++|.|.+++.+|+|.|+|.+.+..|..
T Consensus         7 G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g~~   86 (98)
T d1hnga1           7 GALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTR   86 (98)
T ss_dssp             EETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTCCE
T ss_pred             EecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCCCE
Confidence            67899999999632 222 246999998764421          12222 345789999999999999999999999986


Q ss_pred             --eeEEEEEEe
Q psy14542        301 --KMQLFIQYA  309 (371)
Q Consensus       301 --~~~~~l~v~  309 (371)
                        ..++.|.|.
T Consensus        87 ~~~~~~~L~V~   97 (98)
T d1hnga1          87 ILNKALDLRIL   97 (98)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEEEE
Confidence              567777775

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=4.4e-09  Score=69.87  Aligned_cols=68  Identities=24%  Similarity=0.473  Sum_probs=48.7

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeCCE--EEeeC------------------------CeeEEEEccCCcCCCeEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGL--VLRRN------------------------SDEVLVLDRVQREDAGMY   74 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~--~~~~~------------------------~~~~l~i~~~~~~d~G~Y   74 (371)
                      +...+|++|+|+|... ......+.|++...  .+...                        .+.+|.|.+++.+|+|.|
T Consensus         4 V~~~~G~svtL~C~~s-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y   82 (97)
T d2nxyb1           4 VLGKKGDTVELTCTAS-QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (97)
T ss_dssp             EEEETTSCEEECCBCS-SSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             EEEEcCCcEEEEEEEe-cCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEE
Confidence            5678999999999654 44556799998432  11111                        356799999999999999


Q ss_pred             EEEEEcCCCCeEEEEEEEE
Q psy14542         75 QCHVSADDDSAQMSAQVIL   93 (371)
Q Consensus        75 ~C~~~~~~~~~~~~~~l~v   93 (371)
                      .|.+.+    ....+.|.|
T Consensus        83 ~C~v~~----~~~~v~L~V   97 (97)
T d2nxyb1          83 ICEVED----QKEEVQLLV   97 (97)
T ss_dssp             EEEETT----EEEEEEEEE
T ss_pred             EEEEec----CCeEEEEEC
Confidence            999954    344555554

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=1.3e-08  Score=69.63  Aligned_cols=69  Identities=19%  Similarity=0.300  Sum_probs=51.5

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe--CCE-E--E-ee-C-------------------CeeEEEEccC
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK--DGL-V--L-RR-N-------------------SDEVLVLDRV   66 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~--~~~-~--~-~~-~-------------------~~~~l~i~~~   66 (371)
                      |+..|.. +.+.+|++++|.|..........+.|||  .++ .  + .. .                   ...+|.|.++
T Consensus         2 vtqsP~~-l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   80 (114)
T d3bp5a1           2 LTFYPAW-LTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDT   80 (114)
T ss_dssp             EEEESSE-EEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSC
T ss_pred             ceECCCe-EEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECcc
Confidence            6677888 9999999999999765544455689998  121 1  1 10 0                   4567999999


Q ss_pred             CcCCCeEEEEEEEcCC
Q psy14542         67 QREDAGMYQCHVSADD   82 (371)
Q Consensus        67 ~~~d~G~Y~C~~~~~~   82 (371)
                      +.+|+|.|.|.+....
T Consensus        81 ~~~Dsg~YyCa~~~~~   96 (114)
T d3bp5a1          81 RRNDSGIYLCGAISLH   96 (114)
T ss_dssp             CGGGCEEEEEEEECSS
T ss_pred             CcCCCeEEEEEEEeCC
Confidence            9999999999987543

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=5.7e-10  Score=78.39  Aligned_cols=74  Identities=20%  Similarity=0.345  Sum_probs=53.5

Q ss_pred             EEEeccCcEEEEEEecCCCC---CCeeEEEeC--C-----EE-Ee-eC------------------------CeeEEEEc
Q psy14542         21 VVVDVGHRIELHCRVSPKRL---SSAKAWLKD--G-----LV-LR-RN------------------------SDEVLVLD   64 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~---~~~~~W~~~--~-----~~-~~-~~------------------------~~~~l~i~   64 (371)
                      +.+.+|++++|.|.......   ...+.|++.  +     .. +. ..                        ...+|.|.
T Consensus        14 v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~   93 (124)
T d1eaja_          14 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVT   93 (124)
T ss_dssp             EEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEEC
T ss_pred             EEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEEc
Confidence            78899999999997653222   235899861  1     00 00 00                        34679999


Q ss_pred             cCCcCCCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542         65 RVQREDAGMYQCHVSADDDSAQMSAQVILG   94 (371)
Q Consensus        65 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~   94 (371)
                      +++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus        94 ~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          94 NLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            999999999999999887766777777774

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.84  E-value=5.5e-09  Score=73.40  Aligned_cols=80  Identities=20%  Similarity=0.306  Sum_probs=58.4

Q ss_pred             eecCCeEEEEEEeecCC---CCceEEEeCCccc-------------c----cCCceEE-------ecceEEEeccCCCCC
Q psy14542        234 VKKDESVILPCSAQGNP---LPTIKWYKQDSPV-------------E----ESDRIQR-------IGSSLSISHVEESDS  286 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p---~~~v~W~~~~~~~-------------~----~~~~~~~-------~~~~l~i~~~~~~d~  286 (371)
                      +..|++++|.|.+....   ...+.|++.+...             .    ...+...       .+.+|.|.+++.+|+
T Consensus        14 ~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~   93 (126)
T d1pkoa_          14 ALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDE   93 (126)
T ss_dssp             EETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGGGC
T ss_pred             EEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEchhHC
Confidence            88999999999976432   2358999865311             0    0012221       124799999999999


Q ss_pred             eEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542        287 GVWNCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       287 G~Y~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      |.|.|.+.+..+.....+.|.|.+|+.
T Consensus        94 G~Y~C~v~~~~~~~~~~v~L~V~~P~~  120 (126)
T d1pkoa_          94 GGYTCFFRDHSYQEEAAVELKVEDPFY  120 (126)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEECTTT
T ss_pred             eEEEEEEEECCCEEEEEEEEEEeCCCE
Confidence            999999999988888889999988655

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=6.3e-09  Score=68.31  Aligned_cols=71  Identities=17%  Similarity=0.174  Sum_probs=55.6

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----CeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHVSAD   81 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~   81 (371)
                      .++|.+.+.|..  .|..|++|+|.|.. .......+.|+|+|......     ....+.|.+++.+|+|.|+|.....
T Consensus         3 ~PkP~Lsa~P~~--~V~~G~~VTL~C~~-~~~~~~~f~L~k~g~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2           3 YGKPFLSADRGL--VLMPGENISLTCSS-AHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             SCCCEEEESSCS--EECTTCCCEEEEEC-SSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CCCCEEEEeCCC--ccCCCCeEEEEEeC-CCCCceEEEEEECCcccceEEcCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            468899999987  79999999999953 22344579999987532221     4578999999999999999998754

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=4.3e-09  Score=72.65  Aligned_cols=79  Identities=18%  Similarity=0.412  Sum_probs=55.7

Q ss_pred             eCCCcEEEeccCcEEEEEEecCCC--CCCeeEEEeCCE-----EEeeC--------------------CeeEEEEccCCc
Q psy14542         16 SPSGQVVVDVGHRIELHCRVSPKR--LSSAKAWLKDGL-----VLRRN--------------------SDEVLVLDRVQR   68 (371)
Q Consensus        16 ~p~~~~~~~~G~~v~l~C~~~~~~--~~~~~~W~~~~~-----~~~~~--------------------~~~~l~i~~~~~   68 (371)
                      .|.. +.+.+|++|+|.|......  ....+.|+|...     .+...                    ...+|.|.+++.
T Consensus         5 ~P~~-V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~   83 (116)
T d1xeda_           5 GPEE-VNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ   83 (116)
T ss_dssp             CCSE-EEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CCCE-EEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCc
Confidence            4555 8899999999999654332  234578987321     11111                    567899999999


Q ss_pred             CCCeEEEEEEEcCCCCeEEEEEEEEec
Q psy14542         69 EDAGMYQCHVSADDDSAQMSAQVILGG   95 (371)
Q Consensus        69 ~d~G~Y~C~~~~~~~~~~~~~~l~v~~   95 (371)
                      +|+|.|.|.+..........+.|.|.+
T Consensus        84 ~DsG~Y~C~v~~~~~~~~~~v~L~V~~  110 (116)
T d1xeda_          84 DDSGRYKCGLGINSRGLSFDVSLEVLE  110 (116)
T ss_dssp             GGCEEEEEEESCGGGCCEEEEEEEEEC
T ss_pred             CCCEEEEEEEEcCCCCceEeEEEEEEC
Confidence            999999999975555555667888873

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.79  E-value=2.3e-08  Score=68.60  Aligned_cols=70  Identities=20%  Similarity=0.315  Sum_probs=51.7

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe---CCE--EEe-eC----------------------CeeEEEEc
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK---DGL--VLR-RN----------------------SDEVLVLD   64 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~---~~~--~~~-~~----------------------~~~~l~i~   64 (371)
                      |+..|.. +.+.+|++++|.|..........+.|||   +..  .+. ..                      ...+|.|.
T Consensus         3 VtQ~p~~-~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~   81 (116)
T d1tvda_           3 VTQSSPD-QTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVIS   81 (116)
T ss_dssp             EECCSCC-EEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEES
T ss_pred             EEccCCC-EEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeec
Confidence            5566777 8999999999999765555556799997   211  111 10                      44689999


Q ss_pred             cCCcCCCeEEEEEEEcCCC
Q psy14542         65 RVQREDAGMYQCHVSADDD   83 (371)
Q Consensus        65 ~~~~~d~G~Y~C~~~~~~~   83 (371)
                      +++.+|+|.|.|.+....+
T Consensus        82 ~~~~~Dsg~YyCa~~~~~~  100 (116)
T d1tvda_          82 PVRTEDSATYYCAFTLPPP  100 (116)
T ss_dssp             SCCGGGCEEEEEEEECTTT
T ss_pred             CccccccccceeeEecCCC
Confidence            9999999999999875543

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.78  E-value=6.8e-09  Score=72.06  Aligned_cols=79  Identities=19%  Similarity=0.375  Sum_probs=52.5

Q ss_pred             EeCCCcEEEeccCcEEEEEEecCC---CCCCeeEEEeC--C----EEE---------eeC----------------CeeE
Q psy14542         15 MSPSGQVVVDVGHRIELHCRVSPK---RLSSAKAWLKD--G----LVL---------RRN----------------SDEV   60 (371)
Q Consensus        15 ~~p~~~~~~~~G~~v~l~C~~~~~---~~~~~~~W~~~--~----~~~---------~~~----------------~~~~   60 (371)
                      ..|.. +.+..|++++|.|.....   .....+.|++.  +    ..+         ...                .+.+
T Consensus         4 ~~p~~-v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   82 (119)
T d1neua_           4 YTDRE-VYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGS   82 (119)
T ss_dssp             ECCSE-EEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCC
T ss_pred             cCCCe-EEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEE
Confidence            34444 889999999999976432   23347999861  1    111         000                3468


Q ss_pred             EEEccCCcCCCeEEEEEEEcCCC--CeEEEEEEEEe
Q psy14542         61 LVLDRVQREDAGMYQCHVSADDD--SAQMSAQVILG   94 (371)
Q Consensus        61 l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~l~v~   94 (371)
                      |.|.+++.+|+|.|.|.+.+..+  .....+.|.|.
T Consensus        83 L~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             EEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            99999999999999999987543  23455677665

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.2e-08  Score=66.38  Aligned_cols=68  Identities=22%  Similarity=0.367  Sum_probs=53.6

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee-----CCeeEEEEccCCcCCCeEEEEEEE
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR-----NSDEVLVLDRVQREDAGMYQCHVS   79 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~~~   79 (371)
                      -++|.+.+.|..  .|..|++|+|.|..  ......+.|+|+|.....     .....+.|.+++..|+|.|+|...
T Consensus         2 ypkPsLsa~P~~--~V~~G~~VTL~C~~--~~~~~~f~L~Keg~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2           2 YDTPTLSVHPGP--EVISGEKVTFYCRL--DTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             SCCCEEEEESCS--EEETTCEEEEEEEC--SSSCSEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CCCCEEEEeCCC--cccCCCcEEEEECC--CCCCCEEEEEECCCccceeecCCCceeEEEecccChhcCceEEEEeE
Confidence            468999999987  79999999999953  345567999997542211     156789999999999999999754

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=5.8e-09  Score=70.41  Aligned_cols=81  Identities=20%  Similarity=0.286  Sum_probs=53.2

Q ss_pred             eecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEc-ccCcC-CCeeEEEEEeCCceeEeccceEEEEEeecCC
Q psy14542        108 VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLD-RVQRE-DAGMYQCHIEDGKYHMLSSGELIIHQVDESD  185 (371)
Q Consensus       108 ~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~-~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d  185 (371)
                      +.+|++|.|.|....... ..+.|+|........  ...... ..... ..+.|     .+|..+..+++|.|.+++.+|
T Consensus        11 v~~G~~V~L~c~~~p~~~-~~~~W~k~~~~~~~~--~i~~y~~~~~~~~~~~~y-----~gR~~l~~ngSL~I~~v~~~D   82 (107)
T d1l6za1          11 VAEDNNVLLLVHNLPLAL-GAFAWYKGNTTAIDK--EIARFVPNSNMNFTGQAY-----SGREIIYSNGSLLFQMITMKD   82 (107)
T ss_dssp             CCTTCCEEEEEESCCTTC-SEEEEEESSCCSGGG--EEEEECSTTCCEECCSSC-----CSSEEECTTSCEEECSCCGGG
T ss_pred             ccCCCCEEEEecCCCCCc-eEEEEEeCcccCCce--eeEEEEcCCCccccCCcc-----eeEEEEcccccEEEcCCCchh
Confidence            369999999998543333 689999965432211  111111 10000 01112     457788888999999999999


Q ss_pred             ccceeEEEeecc
Q psy14542        186 RYRSYQCRGVNK  197 (371)
Q Consensus       186 ~~g~y~C~~~~~  197 (371)
                       +|.|+|.+.+.
T Consensus        83 -~G~Y~c~v~~~   93 (107)
T d1l6za1          83 -MGVYTLDMTDE   93 (107)
T ss_dssp             -CEEEEEEEEET
T ss_pred             -CEEEEEEEEEC
Confidence             99999999876

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.71  E-value=8.4e-08  Score=65.49  Aligned_cols=68  Identities=24%  Similarity=0.377  Sum_probs=51.1

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC---C--EE-EeeC-------------------CeeEEEEccCC
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD---G--LV-LRRN-------------------SDEVLVLDRVQ   67 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~---~--~~-~~~~-------------------~~~~l~i~~~~   67 (371)
                      |+..|.. +.+.+|++++|.|.... .....+.||+-   +  .. +...                   ...+|.|.+++
T Consensus         3 V~Q~P~~-~~~~~G~~vtL~C~~~~-~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~   80 (114)
T d2cdea1           3 VEQSPQS-LIILEGKNCTLQCNYTV-SPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQ   80 (114)
T ss_dssp             EEEECSE-EEEETTCCCEEEEEECC-SCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCC
T ss_pred             cEeeCCE-EEEeCCCCEEEEEEEcC-CCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccC
Confidence            5667777 89999999999996543 44567999971   1  11 1111                   67789999999


Q ss_pred             cCCCeEEEEEEEcCC
Q psy14542         68 REDAGMYQCHVSADD   82 (371)
Q Consensus        68 ~~d~G~Y~C~~~~~~   82 (371)
                      .+|+|.|.|.+....
T Consensus        81 ~~Dsg~Y~Ca~~~~~   95 (114)
T d2cdea1          81 LSDSASYICVVSDRG   95 (114)
T ss_dssp             GGGCSEEEEEEECSC
T ss_pred             hhhCcccceeeecCC
Confidence            999999999998643

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.70  E-value=3.3e-08  Score=65.30  Aligned_cols=69  Identities=17%  Similarity=0.212  Sum_probs=53.5

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEEE
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHVS   79 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~   79 (371)
                      -++|.+.+.|..  .|..|++|+|.|...  .+...+.|+|+|......        ....+.|..+...|+|.|+|...
T Consensus         4 ~pkPsLsa~P~~--~V~~G~~VTL~C~~~--~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~   79 (99)
T d1nkra2           4 YEKPSLSAQPGP--TVLAGENVTLSCSSR--SSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGS   79 (99)
T ss_dssp             SCCCEEEEESCS--EECTTCEEEEEEEES--SCCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEE
T ss_pred             CCCCEEEEeCCC--cccCCCeEEEEECCC--CCccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEee
Confidence            468999999987  789999999999643  456779999987432111        34567888888999999999876


Q ss_pred             c
Q psy14542         80 A   80 (371)
Q Consensus        80 ~   80 (371)
                      .
T Consensus        80 ~   80 (99)
T d1nkra2          80 F   80 (99)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=4e-08  Score=66.24  Aligned_cols=65  Identities=20%  Similarity=0.319  Sum_probs=48.1

Q ss_pred             EEEeccCcEEEEEEecCCCCC---CeeEEEeCCEEEeeC--------------------CeeEEEEccCCcCCCeEEEEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLS---SAKAWLKDGLVLRRN--------------------SDEVLVLDRVQREDAGMYQCH   77 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~---~~~~W~~~~~~~~~~--------------------~~~~l~i~~~~~~d~G~Y~C~   77 (371)
                      +.+..|++++|.|........   ..+.|.+++..+...                    ++.+|.|.+++.+|+|.|.|.
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~   83 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV   83 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEE
Confidence            578899999999965433222   347888877654221                    467999999999999999999


Q ss_pred             EEcCCCCe
Q psy14542         78 VSADDDSA   85 (371)
Q Consensus        78 ~~~~~~~~   85 (371)
                      +.+..+..
T Consensus        84 V~~~~~~~   91 (105)
T d1dr9a1          84 VLKYEKDA   91 (105)
T ss_dssp             EEECCTTS
T ss_pred             EEeCCCCC
Confidence            98654443

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=3.3e-08  Score=64.88  Aligned_cols=68  Identities=13%  Similarity=0.276  Sum_probs=54.1

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee---C-----CeeEEEEccCCcCCCeEEEEEEEc
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR---N-----SDEVLVLDRVQREDAGMYQCHVSA   80 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~---~-----~~~~l~i~~~~~~d~G~Y~C~~~~   80 (371)
                      ++|.|.+.|..  .|..|++|+|.|..  ..+...|.++|+|.....   .     ....+.|.+++.+|+|.|+|....
T Consensus         3 PkP~Lsa~Ps~--~V~~G~~VTL~C~~--~~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1           3 PKPTLWAEPGS--VITQGSPVTLRCQG--GQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             CCCEEEEESCS--EEETTCCEEEEEEC--CTTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeECCC--ccCCCCcEEEEEeC--CCCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            57899999987  68899999999963  344567899998753221   0     556899999999999999998753

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.68  E-value=6.2e-08  Score=66.26  Aligned_cols=69  Identities=19%  Similarity=0.296  Sum_probs=50.1

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--C---EEEee--C-------------------CeeEEEEccC
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--G---LVLRR--N-------------------SDEVLVLDRV   66 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~---~~~~~--~-------------------~~~~l~i~~~   66 (371)
                      |+..|.. +.+.+|++|+|.|..........+.|||-  +   ..+..  .                   ...+|.|.++
T Consensus         3 VtQ~~~~-v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   81 (114)
T d2ak4d1           3 VTQAQTE-ISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITAS   81 (114)
T ss_dssp             EECCCCE-EEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSC
T ss_pred             EEecCCe-EEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccc
Confidence            4555666 88999999999996555544556889981  1   11110  0                   5678999999


Q ss_pred             CcCCCeEEEEEEEcCC
Q psy14542         67 QREDAGMYQCHVSADD   82 (371)
Q Consensus        67 ~~~d~G~Y~C~~~~~~   82 (371)
                      +.+|+|.|.|.+....
T Consensus        82 ~~~Dsg~YyCa~~~~~   97 (114)
T d2ak4d1          82 QVVDSAVYFCALSGFY   97 (114)
T ss_dssp             CGGGCEEEEEEEECSB
T ss_pred             ccccCCCceEeCCCCC
Confidence            9999999999876543

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.68  E-value=2.7e-08  Score=68.81  Aligned_cols=69  Identities=23%  Similarity=0.515  Sum_probs=52.0

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe---CC-----EEE-eeC------------------------
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK---DG-----LVL-RRN------------------------   56 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~---~~-----~~~-~~~------------------------   56 (371)
                      .|.|...|.. +.+.+|++++|.|.... .....+.|||   +.     ..+ ...                        
T Consensus         1 a~~~~~~P~~-~~~~~G~~vtL~C~~~~-~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~   78 (122)
T d1nezg_           1 APELRIFPKK-MDAELGQKVDLVCEVLG-SVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDT   78 (122)
T ss_dssp             CCEEEEESSC-EEECTTCCEEEEEEEES-CCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEET
T ss_pred             CCceEEcCCE-EEECCCCCEEEEEEEcC-ccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCC
Confidence            3678889999 99999999999996543 3456799998   21     111 110                        


Q ss_pred             -CeeEEEEccCCcCCCeEEEEEEEc
Q psy14542         57 -SDEVLVLDRVQREDAGMYQCHVSA   80 (371)
Q Consensus        57 -~~~~l~i~~~~~~d~G~Y~C~~~~   80 (371)
                       ...+|.|.+++.+|+|.|.|.+..
T Consensus        79 ~~~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          79 NNKYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             TTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEeEEEEcccccCCCEEEEeeEeC
Confidence             235799999999999999999863

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=2.4e-08  Score=68.23  Aligned_cols=67  Identities=28%  Similarity=0.497  Sum_probs=51.1

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe----CCE----EEeeC---------------------CeeEEEE
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK----DGL----VLRRN---------------------SDEVLVL   63 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~----~~~----~~~~~---------------------~~~~l~i   63 (371)
                      +...|.. ..+.+|++|+|.|..........+.|||    .+.    .+...                     ....|.|
T Consensus         3 ~~~sP~~-~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I   81 (114)
T d1akjd_           3 FRVSPLD-RTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTL   81 (114)
T ss_dssp             EEEECCS-CCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEE
T ss_pred             eeECCCc-EeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEE
Confidence            6678888 8899999999999766555455689998    111    11111                     4568999


Q ss_pred             ccCCcCCCeEEEEEEEc
Q psy14542         64 DRVQREDAGMYQCHVSA   80 (371)
Q Consensus        64 ~~~~~~d~G~Y~C~~~~   80 (371)
                      .+++.+|+|.|.|.+..
T Consensus        82 ~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          82 SDFRRENEGYYFCSALS   98 (114)
T ss_dssp             SSCCGGGCEEEEEEEEE
T ss_pred             ccCCCCCCEEEeEeEcC
Confidence            99999999999999874

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.66  E-value=1e-07  Score=64.52  Aligned_cols=64  Identities=19%  Similarity=0.348  Sum_probs=46.8

Q ss_pred             CCCcEEEeccCcEEEEEEecCCCCCCeeEEEe--CC---EEEeeC------------------CeeEEEEccCCcCCCeE
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK--DG---LVLRRN------------------SDEVLVLDRVQREDAGM   73 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~--~~---~~~~~~------------------~~~~l~i~~~~~~d~G~   73 (371)
                      |+. +.+.+|++++|.|..........+.|||  .|   +.+...                  ....|.|.+++.+|+|.
T Consensus         5 P~s-vsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   83 (110)
T d2esvd1           5 PPS-MDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAV   83 (110)
T ss_dssp             CSE-EEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEE
T ss_pred             CCE-EEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceE
Confidence            444 7899999999999655444445589998  12   111110                  66789999999999999


Q ss_pred             EEEEEEcC
Q psy14542         74 YQCHVSAD   81 (371)
Q Consensus        74 Y~C~~~~~   81 (371)
                      |.|.+...
T Consensus        84 YyCa~~~~   91 (110)
T d2esvd1          84 YYCIVVRS   91 (110)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEeCC
Confidence            99998644

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.7e-07  Score=63.31  Aligned_cols=63  Identities=21%  Similarity=0.452  Sum_probs=45.5

Q ss_pred             EEEeccCcEEEEEEecCCCC-CCeeEEEeC---CEE--E-eeC-------------------CeeEEEEccCCcCCCeEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRL-SSAKAWLKD---GLV--L-RRN-------------------SDEVLVLDRVQREDAGMY   74 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~---~~~--~-~~~-------------------~~~~l~i~~~~~~d~G~Y   74 (371)
                      +.+.+|++++|.|....... ...+.|+|.   +..  + ...                   ...+|.|.+++.+|+|.|
T Consensus         6 v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~Y   85 (108)
T d1hkfa_           6 LQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHY   85 (108)
T ss_dssp             EEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             EEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEEE
Confidence            77899999999997654433 345789872   111  1 111                   667899999999999999


Q ss_pred             EEEEEcCCC
Q psy14542         75 QCHVSADDD   83 (371)
Q Consensus        75 ~C~~~~~~~   83 (371)
                      .|.+.....
T Consensus        86 ~C~v~~~~~   94 (108)
T d1hkfa_          86 WCRIYRPSD   94 (108)
T ss_dssp             EEEEECTTT
T ss_pred             EEEEecCCC
Confidence            999885443

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.66  E-value=9.2e-08  Score=64.11  Aligned_cols=67  Identities=19%  Similarity=0.426  Sum_probs=49.2

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe---CCEE-E-eeC------------------CeeEEEEccCCc
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK---DGLV-L-RRN------------------SDEVLVLDRVQR   68 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~---~~~~-~-~~~------------------~~~~l~i~~~~~   68 (371)
                      .|+..|.. +.+.+|++++|.|... ......+.||+   +... + ...                  ...+|.|.+++.
T Consensus         2 qltQsP~~-l~~~~G~svtl~C~~s-~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~   79 (106)
T d1a0ql1           2 ELTQSPSS-LSASLGGKVTITCKAS-QDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEP   79 (106)
T ss_dssp             CEEEECSE-EEECTTCCEEEEEEES-SCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCG
T ss_pred             ceECcCCE-EEECCCCCEEEEEEcC-CCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcc
Confidence            35666777 8899999999999654 33344599998   1111 1 111                  567899999999


Q ss_pred             CCCeEEEEEEEc
Q psy14542         69 EDAGMYQCHVSA   80 (371)
Q Consensus        69 ~d~G~Y~C~~~~   80 (371)
                      +|+|.|.|.+..
T Consensus        80 ~DsA~YyCa~~~   91 (106)
T d1a0ql1          80 EDIATYYCLQYY   91 (106)
T ss_dssp             GGCSEEEEEECS
T ss_pred             cCCEeEEEEEeC
Confidence            999999998754

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.9e-07  Score=61.44  Aligned_cols=69  Identities=19%  Similarity=0.264  Sum_probs=52.0

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEEE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQCH   77 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~   77 (371)
                      ++|.|.+.|..  .|..|++|+|.|...  .....+.++|+|......           ....+.|.+++..|+|.|+|.
T Consensus         3 pkPsLsa~P~~--~v~~G~~VTL~C~~~--~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~   78 (98)
T d1ugna2           3 IKPTLSAQPSP--VVNSGGNVTLQCDSQ--VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCY   78 (98)
T ss_dssp             CCCEEEEESCS--EEETTCCEEEEEECS--SCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEE
T ss_pred             CCCEEEeeCCC--ccCCCCcEEEEeCCC--CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEe
Confidence            67999999987  699999999999633  445678899987643211           346799999999999999998


Q ss_pred             EEcC
Q psy14542         78 VSAD   81 (371)
Q Consensus        78 ~~~~   81 (371)
                      ....
T Consensus        79 y~~~   82 (98)
T d1ugna2          79 AYDS   82 (98)
T ss_dssp             EECT
T ss_pred             eEcC
Confidence            8643

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.65  E-value=7.8e-08  Score=64.36  Aligned_cols=67  Identities=31%  Similarity=0.526  Sum_probs=49.5

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe--CCEE---EeeC------------------CeeEEEEccCCc
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK--DGLV---LRRN------------------SDEVLVLDRVQR   68 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~--~~~~---~~~~------------------~~~~l~i~~~~~   68 (371)
                      .++..|.. +.+.+|++++|.|.... .....+.|||  .|+.   +...                  ....|.|.+++.
T Consensus         3 ~ltQ~P~s-~~~~~G~svtl~C~~s~-~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~   80 (107)
T d1c5cl1           3 QLTQSPSS-LSASLGERVSLTCRTSQ-EISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLES   80 (107)
T ss_dssp             CEEEECSE-EEECTTCCEEEEEEESS-CCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred             CEEccCCE-EEECCCCCEEEEEEeCC-CCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcc
Confidence            35566766 88999999999996543 3455699998  2211   1111                  567999999999


Q ss_pred             CCCeEEEEEEEc
Q psy14542         69 EDAGMYQCHVSA   80 (371)
Q Consensus        69 ~d~G~Y~C~~~~   80 (371)
                      +|+|.|.|.+..
T Consensus        81 ~Dsa~YyCa~~~   92 (107)
T d1c5cl1          81 EDFADYYCLQYA   92 (107)
T ss_dssp             GGCSEEEEEECS
T ss_pred             cCCeEEEEecCc
Confidence            999999998764

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.64  E-value=1.5e-07  Score=64.28  Aligned_cols=68  Identities=19%  Similarity=0.297  Sum_probs=49.1

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--C---EEEeeC--------------------CeeEEEEccCC
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--G---LVLRRN--------------------SDEVLVLDRVQ   67 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~---~~~~~~--------------------~~~~l~i~~~~   67 (371)
                      |+..|.. +.+.+|++++|.|..... ....+.|||.  +   +.+...                    ....|.|.+++
T Consensus         4 V~Q~~~~-v~v~~G~~vtL~C~~~~~-~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (115)
T d1lp9e1           4 VTQTEGL-VTLTEGLPVMLNCTYQST-YSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQ   81 (115)
T ss_dssp             EEECCSE-EEEETTSCEEECEEEECS-SSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCC
T ss_pred             EEcCCCe-EEECCCCCEEEEEEEeCC-CcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccc
Confidence            4445555 889999999999976543 3456999982  1   222111                    45679999999


Q ss_pred             cCCCeEEEEEEEcCC
Q psy14542         68 REDAGMYQCHVSADD   82 (371)
Q Consensus        68 ~~d~G~Y~C~~~~~~   82 (371)
                      .+|+|.|.|.+....
T Consensus        82 ~~Dsg~YyCa~~~~~   96 (115)
T d1lp9e1          82 LSDSALYYCALFLAS   96 (115)
T ss_dssp             GGGCEEEEEEEEECS
T ss_pred             cccCccceEEEEcCC
Confidence            999999999886543

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.63  E-value=5.8e-08  Score=66.55  Aligned_cols=68  Identities=22%  Similarity=0.404  Sum_probs=49.7

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe---CCEE--Ee-eC--------------------CeeEEEEccC
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK---DGLV--LR-RN--------------------SDEVLVLDRV   66 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~---~~~~--~~-~~--------------------~~~~l~i~~~   66 (371)
                      |+..|.. +.+.+|++|+|.|..........+.|||   ++..  +. ..                    ....|.|.++
T Consensus         2 VtQ~p~~-v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   80 (115)
T d1fo0a_           2 VTQTQTS-ISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITAT   80 (115)
T ss_dssp             EECCCCE-EEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSC
T ss_pred             eEccCCE-EEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCC
Confidence            4455566 8899999999999765555555689998   2111  10 00                    4578999999


Q ss_pred             CcCCCeEEEEEEEcC
Q psy14542         67 QREDAGMYQCHVSAD   81 (371)
Q Consensus        67 ~~~d~G~Y~C~~~~~   81 (371)
                      +.+|+|.|.|.+...
T Consensus        81 ~~~Dsa~YyCa~~~~   95 (115)
T d1fo0a_          81 QIEDSAVYFCAMRGD   95 (115)
T ss_dssp             CGGGCEEEEEEEECC
T ss_pred             CccccccccceeecC
Confidence            999999999998744

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=5.9e-08  Score=63.63  Aligned_cols=87  Identities=14%  Similarity=0.090  Sum_probs=58.5

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCce---EEecceEEEeccCCCCCeEEEEEEEcC
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI---QRIGSSLSISHVEESDSGVWNCVANNS  296 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~G~Y~C~a~n~  296 (371)
                      .+|.+...+...  +..|+.|+|.|... .....+.|+++|.........   ......+.|.++..+|+|.|+|...+.
T Consensus         3 PKPsLsa~P~~~--V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~   79 (95)
T d1olla1           3 PKPFIWAEPHFM--VPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVG   79 (95)
T ss_dssp             CCCEEEEESCSE--EETTCCEEEEEECC-TTCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeeCCCc--ccCCCcEEEEEecC-CCccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCC
Confidence            456666666443  88999999999864 344679999988632211110   112347999999999999999998875


Q ss_pred             CCC--ceeEEEEEEe
Q psy14542        297 EGQ--DKMQLFIQYA  309 (371)
Q Consensus       297 ~g~--~~~~~~l~v~  309 (371)
                      .+.  .+..+.|.|.
T Consensus        80 ~~~S~~Sd~leL~VT   94 (95)
T d1olla1          80 ELWSEPSNLLDLVVT   94 (95)
T ss_dssp             TEECCCCCCEEEEEE
T ss_pred             CCccCCCCCEEEEEe
Confidence            442  3445566554

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.62  E-value=2.3e-07  Score=62.21  Aligned_cols=68  Identities=32%  Similarity=0.605  Sum_probs=50.5

Q ss_pred             ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--C---EEEeeC------------------CeeEEEEccCC
Q psy14542         11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--G---LVLRRN------------------SDEVLVLDRVQ   67 (371)
Q Consensus        11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~---~~~~~~------------------~~~~l~i~~~~   67 (371)
                      +.++..|.. +.+.+|++|+|.|..... ....+.|||-  |   ..+...                  ....|.|.+++
T Consensus         2 ~~~tQ~P~s-l~~~~G~svtL~C~~s~~-~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~   79 (107)
T d1tjgl1           2 LQLTQSPSS-LSASVGDRITITCRASQG-VTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLR   79 (107)
T ss_dssp             CCEEEECSE-EEECTTCCEEEEEEESSC-CTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC
T ss_pred             ccEEeeCCE-EEECCCCCEEEEEEECCC-CCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccce
Confidence            346677887 889999999999965533 3457899981  1   122111                  56789999999


Q ss_pred             cCCCeEEEEEEEc
Q psy14542         68 REDAGMYQCHVSA   80 (371)
Q Consensus        68 ~~d~G~Y~C~~~~   80 (371)
                      .+|+|.|.|....
T Consensus        80 ~~DsA~YyCa~~~   92 (107)
T d1tjgl1          80 PEDFATYYCQQLH   92 (107)
T ss_dssp             GGGCSEEEEEECS
T ss_pred             eCcCceEEEEECc
Confidence            9999999997654

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.62  E-value=9.2e-08  Score=64.32  Aligned_cols=67  Identities=28%  Similarity=0.562  Sum_probs=49.3

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--CE---EEeeC------------------CeeEEEEccCCc
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--GL---VLRRN------------------SDEVLVLDRVQR   68 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~~---~~~~~------------------~~~~l~i~~~~~   68 (371)
                      .|+..|.. +.+.+|++++|.|.... .....+.|||.  |+   .+...                  ....|.|.+++.
T Consensus         3 ~~tQ~p~~-l~v~~G~~vtL~C~~~~-~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~   80 (107)
T d1j1pl_           3 VLTQSPAT-LSVTPGNSVSLSCRASQ-SIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVET   80 (107)
T ss_dssp             CEEEECSE-EEECTTCCEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred             CEECcCCe-EEECCCCCEEEEEEecC-CCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCc
Confidence            35666777 88999999999996543 33456999982  11   11111                  667999999999


Q ss_pred             CCCeEEEEEEEc
Q psy14542         69 EDAGMYQCHVSA   80 (371)
Q Consensus        69 ~d~G~Y~C~~~~   80 (371)
                      +|+|.|.|.+.+
T Consensus        81 ~Dsa~YyCa~~~   92 (107)
T d1j1pl_          81 EDFGMYFCQQAN   92 (107)
T ss_dssp             GGCEEEEEEECS
T ss_pred             CCCEEEEEEcCC
Confidence            999999998754

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.62  E-value=3e-07  Score=61.78  Aligned_cols=67  Identities=25%  Similarity=0.497  Sum_probs=49.2

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC-----CEEEeeC------------------CeeEEEEccCCc
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD-----GLVLRRN------------------SDEVLVLDRVQR   68 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~-----~~~~~~~------------------~~~~l~i~~~~~   68 (371)
                      .++..|.. +.+.+|++|+|.|..... ....+.|||-     ...+...                  ....|.|.+++.
T Consensus         3 ~~tQsP~~-l~v~~G~svtl~C~~s~~-~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~   80 (107)
T d1kcvl1           3 VMTQSPKS-MGMSVGEAVTLNCKASEN-VGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQA   80 (107)
T ss_dssp             CEEESCSE-EEEETTCCEEEEEEESSC-CTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             CEECcCCE-EeECCCCCEEEEEEecCC-cCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhhee
Confidence            35566766 889999999999965543 3446999971     1122111                  667899999999


Q ss_pred             CCCeEEEEEEEc
Q psy14542         69 EDAGMYQCHVSA   80 (371)
Q Consensus        69 ~d~G~Y~C~~~~   80 (371)
                      +|+|.|.|.+..
T Consensus        81 ~DSa~YyCa~~~   92 (107)
T d1kcvl1          81 DDDADYYCGQSY   92 (107)
T ss_dssp             GGCEEEEEEECS
T ss_pred             cCCceEEEEecC
Confidence            999999998754

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.61  E-value=2.2e-07  Score=62.34  Aligned_cols=67  Identities=28%  Similarity=0.495  Sum_probs=49.0

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--C---EEEeeC------------------CeeEEEEccCCcC
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--G---LVLRRN------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~---~~~~~~------------------~~~~l~i~~~~~~   69 (371)
                      ++..|.. +.+.+|++++|.|...... ...+.|||-  +   ..+...                  ....|.|.+++.+
T Consensus         4 ~tQsP~~-ltv~~G~svtl~C~~s~~~-~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~   81 (107)
T d1ospl1           4 MSQSSSS-FSVSLGDRVTITCKASEDI-YSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTE   81 (107)
T ss_dssp             EECCCSE-EEECTTCCEEEEEEESSCC-TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGG
T ss_pred             EEeeCCE-EEECCCCCEEEEEecCCCc-ccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccc
Confidence            4555666 8899999999999665433 346999981  1   111111                  5689999999999


Q ss_pred             CCeEEEEEEEcC
Q psy14542         70 DAGMYQCHVSAD   81 (371)
Q Consensus        70 d~G~Y~C~~~~~   81 (371)
                      |+|.|.|.+...
T Consensus        82 Dsa~YyCa~~~~   93 (107)
T d1ospl1          82 DVATYFCQQYWS   93 (107)
T ss_dssp             GCSEEEEEECSS
T ss_pred             cCCcEEEeeccC
Confidence            999999987643

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.60  E-value=1.9e-07  Score=62.97  Aligned_cols=67  Identities=28%  Similarity=0.503  Sum_probs=48.9

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--C---EEEeeC------------------CeeEEEEccCCcC
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--G---LVLRRN------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~---~~~~~~------------------~~~~l~i~~~~~~   69 (371)
                      ++..|.. +.+.+|++++|.|..........+.|||-  +   +.+...                  ....|.|.+++.+
T Consensus         4 ltQ~P~~-~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~   82 (108)
T d2fx7l1           4 LTQSPGT-QSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPE   82 (108)
T ss_dssp             EECSSSE-EEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EEeeCCe-EEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheec
Confidence            4555666 88999999999996544333445889982  1   222211                  5678999999999


Q ss_pred             CCeEEEEEEEc
Q psy14542         70 DAGMYQCHVSA   80 (371)
Q Consensus        70 d~G~Y~C~~~~   80 (371)
                      |+|.|.|.+..
T Consensus        83 Dsa~YyCa~~~   93 (108)
T d2fx7l1          83 DFAVYYCQQYG   93 (108)
T ss_dssp             GCSEEEEEECS
T ss_pred             ccEEEeeecCC
Confidence            99999998754

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.60  E-value=4.4e-07  Score=60.76  Aligned_cols=68  Identities=29%  Similarity=0.550  Sum_probs=49.6

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC---C--EEEeeC------------------CeeEEEEccCCc
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD---G--LVLRRN------------------SDEVLVLDRVQR   68 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~---~--~~~~~~------------------~~~~l~i~~~~~   68 (371)
                      .|+..|.. +.+.+|++++|.|..... ....+.||+-   +  ..+...                  ....|.|.+++.
T Consensus         3 ~vtQ~P~~-l~~~~G~svtL~C~~s~~-~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~   80 (108)
T d1jhll_           3 ELTQSPSY-LVASPGETITINCRASKS-ISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEP   80 (108)
T ss_dssp             CEEEECSE-EEECTTSCEEEEEEESSC-CTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCT
T ss_pred             cEEccCCe-EEecCCCCEEEEEEccCC-cCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEe
Confidence            45666777 889999999999966543 3456999971   1  111111                  556899999999


Q ss_pred             CCCeEEEEEEEcC
Q psy14542         69 EDAGMYQCHVSAD   81 (371)
Q Consensus        69 ~d~G~Y~C~~~~~   81 (371)
                      +|+|.|.|.....
T Consensus        81 ~Dsa~YyCA~~~~   93 (108)
T d1jhll_          81 EDFAMYICQQHNE   93 (108)
T ss_dssp             TCCSEEEEEECSS
T ss_pred             ccceEEEEeeCCC
Confidence            9999999986643

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.59  E-value=1.9e-07  Score=62.48  Aligned_cols=67  Identities=25%  Similarity=0.539  Sum_probs=48.9

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--CE---EEeeC------------------CeeEEEEccCCc
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--GL---VLRRN------------------SDEVLVLDRVQR   68 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~~---~~~~~------------------~~~~l~i~~~~~   68 (371)
                      .++..|.. +.+.+|++++|.|..... ....+.|||.  |+   .+...                  ...+|.|.+++.
T Consensus         3 ~ltQsP~s-lsv~~G~svtl~C~~s~~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~   80 (106)
T d1i8ka_           3 ELTQSPAS-LSVATGEKVTIRCMTSTD-IDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLS   80 (106)
T ss_dssp             CEEEECSE-EECCTTCCEEEEEEESSC-CTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred             CEEeeCCE-EEECCCCCEEEEEEeCCC-CCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCcc
Confidence            45666776 889999999999965433 3456999971  21   11111                  567899999999


Q ss_pred             CCCeEEEEEEEc
Q psy14542         69 EDAGMYQCHVSA   80 (371)
Q Consensus        69 ~d~G~Y~C~~~~   80 (371)
                      +|+|.|.|.+..
T Consensus        81 ~Dsa~YyCa~~~   92 (106)
T d1i8ka_          81 EDVGDYYCLQSF   92 (106)
T ss_dssp             GGCEEEEEEECS
T ss_pred             ccCEEEeEecCc
Confidence            999999998754

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.59  E-value=1.8e-07  Score=63.21  Aligned_cols=69  Identities=16%  Similarity=0.461  Sum_probs=50.6

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCC-CCCCeeEEEe---C---CEEEeeC-----------CeeEEEEccCCcCCCeE
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPK-RLSSAKAWLK---D---GLVLRRN-----------SDEVLVLDRVQREDAGM   73 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~-~~~~~~~W~~---~---~~~~~~~-----------~~~~l~i~~~~~~d~G~   73 (371)
                      +|...|.. +.+.+|++++|.|..... .....+.|||   +   ...+...           ...+|.|.+++.+|+|.
T Consensus         1 rV~Q~P~s-~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~   79 (112)
T d1sq2n_           1 RVDQTPRS-VTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGT   79 (112)
T ss_dssp             CEEEECSE-EEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             CCEecCCE-EEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEE
Confidence            35667777 889999999999966432 3456799998   1   1111111           45689999999999999


Q ss_pred             EEEEEEcC
Q psy14542         74 YQCHVSAD   81 (371)
Q Consensus        74 Y~C~~~~~   81 (371)
                      |.|.+...
T Consensus        80 YyCA~~~~   87 (112)
T d1sq2n_          80 YRCGLGVA   87 (112)
T ss_dssp             EEEEECBT
T ss_pred             EeEEEecC
Confidence            99998754

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=8.7e-08  Score=64.86  Aligned_cols=79  Identities=15%  Similarity=0.191  Sum_probs=54.2

Q ss_pred             eecCCeEEEEEEeec-CCCC--ceEEEeCCcccccCCc--------eEEecceEEEeccCCCCCeEEEEEEEcCCCCc--
Q psy14542        234 VKKDESVILPCSAQG-NPLP--TIKWYKQDSPVEESDR--------IQRIGSSLSISHVEESDSGVWNCVANNSEGQD--  300 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~-~p~~--~v~W~~~~~~~~~~~~--------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--  300 (371)
                      +.+|+.++|+|.+.+ +|.+  .+.|++++..+.....        .....+.|.+.....+++..|+|+|.|..+..  
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~~~~   92 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDS   92 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTT
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCCccc
Confidence            789999999999875 6754  5899998876543211        11223457777666666779999999886542  


Q ss_pred             -----eeEEEEEEecCc
Q psy14542        301 -----KMQLFIQYAHGK  312 (371)
Q Consensus       301 -----~~~~~l~v~~~p  312 (371)
                           .....|.|.++|
T Consensus        93 ~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          93 VPTVRQAVKELQVYISP  109 (109)
T ss_dssp             SCSEEEEEEECCEECCC
T ss_pred             cccccceeEEeEEEeCC
Confidence                 234557777655

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.7e-07  Score=62.35  Aligned_cols=82  Identities=15%  Similarity=0.205  Sum_probs=55.0

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCC--eeEEEeCCEEEeeC-------------CeeEEEEccCCcCCCeE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSS--AKAWLKDGLVLRRN-------------SDEVLVLDRVQREDAGM   73 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~--~~~W~~~~~~~~~~-------------~~~~l~i~~~~~~d~G~   73 (371)
                      ..|.|....    .+.+|+.++|.|.+..+.|..  .+.|++++..+...             ....|.+.....+|...
T Consensus         3 ~~P~I~~~~----~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~   78 (109)
T d1vcaa1           3 KDPEIHLSG----PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKV   78 (109)
T ss_dssp             SCCEEEESS----CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCE
T ss_pred             CCCEEecCC----CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcE
Confidence            345565432    278999999999888888855  68999999887643             23456665444444448


Q ss_pred             EEEEEEcCCCC-------eEEEEEEEEe
Q psy14542         74 YQCHVSADDDS-------AQMSAQVILG   94 (371)
Q Consensus        74 Y~C~~~~~~~~-------~~~~~~l~v~   94 (371)
                      |+|+|.+..+.       ......|.|.
T Consensus        79 ltC~a~~~~~~~~~~~~~~~t~~~L~V~  106 (109)
T d1vcaa1          79 LVCRAKLHIDEMDSVPTVRQAVKELQVY  106 (109)
T ss_dssp             EEEEEEECSCCCTTSCSEEEEEEECCEE
T ss_pred             EEEEEEcCcCCccccccccceeEEeEEE
Confidence            99999976543       2334556665

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=6.7e-08  Score=67.02  Aligned_cols=61  Identities=20%  Similarity=0.329  Sum_probs=43.3

Q ss_pred             EEEeccCcEEEEEEecCC------CCCCeeEEEeCCEEEeeC----------------------------CeeEEEEccC
Q psy14542         21 VVVDVGHRIELHCRVSPK------RLSSAKAWLKDGLVLRRN----------------------------SDEVLVLDRV   66 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~------~~~~~~~W~~~~~~~~~~----------------------------~~~~l~i~~~   66 (371)
                      +.+.+|++|+|+|.....      .....+.|++....-...                            .+.+|.|.++
T Consensus        11 vtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   90 (121)
T d2g5ra1          11 VTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRDA   90 (121)
T ss_dssp             EEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             EEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEECCC
Confidence            789999999999976411      112347898743221110                            5678999999


Q ss_pred             CcCCCeEEEEEEEcC
Q psy14542         67 QREDAGMYQCHVSAD   81 (371)
Q Consensus        67 ~~~d~G~Y~C~~~~~   81 (371)
                      +.+|+|.|.|.+...
T Consensus        91 ~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          91 RMSDAGRYFFRMEKG  105 (121)
T ss_dssp             CGGGCEEEEEEEEET
T ss_pred             ChHHCEEEEEEEEeC
Confidence            999999999999753

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.56  E-value=5e-07  Score=60.53  Aligned_cols=67  Identities=25%  Similarity=0.534  Sum_probs=49.2

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC-----CEEEeeC------------------CeeEEEEccCCc
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD-----GLVLRRN------------------SDEVLVLDRVQR   68 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~-----~~~~~~~------------------~~~~l~i~~~~~   68 (371)
                      .++..|.. +.+.+|++|+|.|..... ....+.||+.     -..+...                  ...+|.|.+++.
T Consensus         3 ~~tQ~P~s-l~~~~G~svtl~C~~s~~-~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~   80 (107)
T d1d5il1           3 KMTQSPSS-MYASLGERVTITCKASQD-INSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEY   80 (107)
T ss_dssp             CEEEECSE-EEECTTCCEEEEEEESSC-CTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred             CEEeeCCE-EEECCCCCEEEEEEcCCC-CCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCC
Confidence            45666776 889999999999965433 3456889971     1112111                  557999999999


Q ss_pred             CCCeEEEEEEEc
Q psy14542         69 EDAGMYQCHVSA   80 (371)
Q Consensus        69 ~d~G~Y~C~~~~   80 (371)
                      +|+|.|.|....
T Consensus        81 ~Dsa~YyCa~~~   92 (107)
T d1d5il1          81 EDMGIYYCLQYD   92 (107)
T ss_dssp             GGCEEEEEEECS
T ss_pred             cCCEEEEeeecc
Confidence            999999998754

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.1e-07  Score=66.19  Aligned_cols=76  Identities=20%  Similarity=0.403  Sum_probs=54.2

Q ss_pred             eecCCeEEEEEEeecCCC----CceEEEeCCccc---------------------ccCCceEE-------ecceEEEecc
Q psy14542        234 VKKDESVILPCSAQGNPL----PTIKWYKQDSPV---------------------EESDRIQR-------IGSSLSISHV  281 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~----~~v~W~~~~~~~---------------------~~~~~~~~-------~~~~l~i~~~  281 (371)
                      +..|+++.|.|.....+.    ..+.|++.....                     ...+|...       ....|.|.++
T Consensus        16 ~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v   95 (124)
T d1eaja_          16 KAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNL   95 (124)
T ss_dssp             EETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEECSC
T ss_pred             EECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEEccc
Confidence            789999999999875433    248898632210                     00122221       1236999999


Q ss_pred             CCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542        282 EESDSGVWNCVANNSEGQDKMQLFIQYA  309 (371)
Q Consensus       282 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  309 (371)
                      +.+|+|.|.|.+.+..+.....+.|.|.
T Consensus        96 ~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          96 QLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            9999999999999988888888888774

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.5e-07  Score=62.38  Aligned_cols=86  Identities=12%  Similarity=0.087  Sum_probs=57.3

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCc-----eEEecceEEEeccCCCCCeEEEEEEE
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDR-----IQRIGSSLSISHVEESDSGVWNCVAN  294 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~a~  294 (371)
                      .+|.+...+.. . +..|++++|.|... .+...+.|+++|........     .......+.|.++..+|+|.|.|...
T Consensus         6 pkPsLsa~P~~-~-V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~   82 (99)
T d1ucta1           6 PMPFISAKSSP-V-IPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYR   82 (99)
T ss_dssp             CCCCEEESSCS-E-EETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCEEEecCCC-c-eeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEE
Confidence            45666666554 3 88999999999865 44567999988753221111     11233579999999999999999998


Q ss_pred             cCCCCc--eeEEEEEE
Q psy14542        295 NSEGQD--KMQLFIQY  308 (371)
Q Consensus       295 n~~g~~--~~~~~l~v  308 (371)
                      +.....  +..+.|.|
T Consensus        83 ~~~~~S~~Sdpl~L~V   98 (99)
T d1ucta1          83 IGHYRFRYSDTLELVV   98 (99)
T ss_dssp             ETTTEEEECCCEEEEE
T ss_pred             CCCcccCCCCCEEEEe
Confidence            865522  33344444

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.55  E-value=7.7e-07  Score=60.00  Aligned_cols=69  Identities=26%  Similarity=0.405  Sum_probs=49.0

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCC---CCeeEEEeC--C---EEEeeC------------------CeeEEEEcc
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRL---SSAKAWLKD--G---LVLRRN------------------SDEVLVLDR   65 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~---~~~~~W~~~--~---~~~~~~------------------~~~~l~i~~   65 (371)
                      .++..|.. +.+.+|++|+|.|....+..   ...+.||+.  |   ..+...                  ....|.|.+
T Consensus         3 ~ltQsP~s-~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~   81 (111)
T d2gsia1           3 VLTQSPAS-LAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHP   81 (111)
T ss_dssp             CEEEECSE-EEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred             ceEeeCCE-EEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhccccc
Confidence            35666776 88999999999996653322   234899981  1   111111                  567899999


Q ss_pred             CCcCCCeEEEEEEEcC
Q psy14542         66 VQREDAGMYQCHVSAD   81 (371)
Q Consensus        66 ~~~~d~G~Y~C~~~~~   81 (371)
                      ++.+|++.|.|.+...
T Consensus        82 ~~~~DsA~YyCa~~~~   97 (111)
T d2gsia1          82 VEEEDAATYYCSHIRE   97 (111)
T ss_dssp             CCGGGCEEEEEEECSS
T ss_pred             ccccCCceEEEEECCC
Confidence            9999999999987643

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.55  E-value=1.4e-07  Score=64.23  Aligned_cols=68  Identities=21%  Similarity=0.415  Sum_probs=50.2

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--CE---EEee--C------------------CeeEEEEccCC
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--GL---VLRR--N------------------SDEVLVLDRVQ   67 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~~---~~~~--~------------------~~~~l~i~~~~   67 (371)
                      |...|.. +.+.+|++++|.|.... .....+.|||-  |+   .+..  .                  ...+|.|.+++
T Consensus         3 V~Q~P~~-v~v~~G~sv~L~C~~s~-~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   80 (113)
T d2bnqd1           3 VTQIPAA-LSVPEGENLVLNCSFTD-SAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQ   80 (113)
T ss_dssp             EECSSSE-EEEETTCCEEEEEEESC-CCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred             cEeeCCE-EEEcCCCCEEEEEEEec-CcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCC
Confidence            5566777 88999999999996543 34456899981  11   1110  0                  66799999999


Q ss_pred             cCCCeEEEEEEEcCC
Q psy14542         68 REDAGMYQCHVSADD   82 (371)
Q Consensus        68 ~~d~G~Y~C~~~~~~   82 (371)
                      .+|+|.|.|.+....
T Consensus        81 ~~Dsg~YyCa~~~~~   95 (113)
T d2bnqd1          81 PGDSATYLCAVRPTS   95 (113)
T ss_dssp             GGGCEEEEEEEEESS
T ss_pred             CCCCcEEeEeEecCC
Confidence            999999999987543

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.55  E-value=1.7e-07  Score=61.22  Aligned_cols=68  Identities=19%  Similarity=0.295  Sum_probs=52.3

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEE----eeC------CeeEEEEccCCcCCCeEEEEEEE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL----RRN------SDEVLVLDRVQREDAGMYQCHVS   79 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~----~~~------~~~~l~i~~~~~~d~G~Y~C~~~   79 (371)
                      +|.|.+.|..  .|..|++|+|.|...  .....+.++|+|...    ...      ....+.|.+++..|+|.|+|...
T Consensus         2 KPsLsa~P~~--~V~~G~~VTl~C~~~--~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~   77 (96)
T d1nkra1           2 KPSLLAHPGP--LVKSEETVILQCWSD--VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGS   77 (96)
T ss_dssp             CCEEEEESCS--EEETTCCEEEEEEES--SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEeeCCC--ccCCCCcEEEEECCC--CCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEE
Confidence            5889999976  899999999999633  445679999976421    110      34679999999999999999876


Q ss_pred             cC
Q psy14542         80 AD   81 (371)
Q Consensus        80 ~~   81 (371)
                      ..
T Consensus        78 ~~   79 (96)
T d1nkra1          78 VT   79 (96)
T ss_dssp             BT
T ss_pred             cC
Confidence            43

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.54  E-value=4.3e-07  Score=61.04  Aligned_cols=67  Identities=25%  Similarity=0.470  Sum_probs=50.0

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe---CC--EEEeeC------------------CeeEEEEccCCc
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK---DG--LVLRRN------------------SDEVLVLDRVQR   68 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~---~~--~~~~~~------------------~~~~l~i~~~~~   68 (371)
                      .++..|.. +.+.+|++++|.|..... ....+.||+   +.  ..+...                  ....|.|.+++.
T Consensus         3 ~ltQsP~~-l~~~~G~svtL~C~~s~~-~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~   80 (109)
T d1mqkl_           3 ELTQTPVS-LSASVGETVTITCRASEN-IYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLP   80 (109)
T ss_dssp             CEEEECSE-EEECTTCCEEEEEEESSC-CTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             CEECcCCE-EEECCCCCEEEEEEeCCC-cCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccc
Confidence            45667777 889999999999965533 344599998   11  122111                  677899999999


Q ss_pred             CCCeEEEEEEEc
Q psy14542         69 EDAGMYQCHVSA   80 (371)
Q Consensus        69 ~d~G~Y~C~~~~   80 (371)
                      +|+|.|.|.+..
T Consensus        81 ~DSa~YyCA~~~   92 (109)
T d1mqkl_          81 EDFGSYYCQHHY   92 (109)
T ss_dssp             GGCEEEEEEECS
T ss_pred             cCCeeEEEeeeC
Confidence            999999998764

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.54  E-value=4.6e-07  Score=60.49  Aligned_cols=64  Identities=19%  Similarity=0.377  Sum_probs=47.3

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC-----CEEEeeC------------------CeeEEEEccCCcC
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD-----GLVLRRN------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~-----~~~~~~~------------------~~~~l~i~~~~~~   69 (371)
                      ++..|.. +.+.+|++++|.|.....  ...+.||+-     -..+...                  ...+|.|.+++.+
T Consensus         3 vtQsP~~-l~~~~G~~vtl~C~~s~~--~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~   79 (104)
T d1yqvl1           3 LTQSPAI-MSASPGEKVTMTCSASSS--VNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETE   79 (104)
T ss_dssp             EEEESSE-EEECTTCCEEEEEEESSC--CSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EeCcCCe-EEECCCCCEEEEEEeCCC--CCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcc
Confidence            5566777 889999999999965433  345899972     1111111                  5678999999999


Q ss_pred             CCeEEEEEEE
Q psy14542         70 DAGMYQCHVS   79 (371)
Q Consensus        70 d~G~Y~C~~~   79 (371)
                      |+|.|.|...
T Consensus        80 Dsa~YyCa~~   89 (104)
T d1yqvl1          80 DAATYYCQQW   89 (104)
T ss_dssp             GCEEEEEEEC
T ss_pred             cCCeEEEEec
Confidence            9999999764

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.52  E-value=5.5e-07  Score=60.27  Aligned_cols=66  Identities=24%  Similarity=0.469  Sum_probs=47.7

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC-----CEEEeeC------------------CeeEEEEccCCcC
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD-----GLVLRRN------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~-----~~~~~~~------------------~~~~l~i~~~~~~   69 (371)
                      ++..|.. +.+.+|++++|.|..... ....+.|||-     -..+...                  ....|.|.+++.+
T Consensus         4 ltQ~p~~-l~~~~G~svtl~C~~s~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~   81 (107)
T d1mexl1           4 MTQSQKF-MSTSLGNRVSVTCKASQN-VGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSE   81 (107)
T ss_dssp             EECCCSE-EEECTTSCEEEEEEESSC-CTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EEcCCCe-EEECCCCCEEEEEEeCCC-CCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhhee
Confidence            4455555 789999999999965433 3446899971     1122211                  5678999999999


Q ss_pred             CCeEEEEEEEc
Q psy14542         70 DAGMYQCHVSA   80 (371)
Q Consensus        70 d~G~Y~C~~~~   80 (371)
                      |++.|.|.+..
T Consensus        82 DsA~YyCa~~~   92 (107)
T d1mexl1          82 DLAEYFCQQYN   92 (107)
T ss_dssp             GCSEEEEEECS
T ss_pred             cceeEEEeECC
Confidence            99999998754

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.52  E-value=3.3e-07  Score=62.58  Aligned_cols=65  Identities=22%  Similarity=0.466  Sum_probs=47.8

Q ss_pred             EeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC-----CEEE---ee--C-----------------------CeeEE
Q psy14542         15 MSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD-----GLVL---RR--N-----------------------SDEVL   61 (371)
Q Consensus        15 ~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~-----~~~~---~~--~-----------------------~~~~l   61 (371)
                      ..|.. +.+.+|++++|.|..........+.|||-     ++.+   ..  .                       ...+|
T Consensus         3 Q~P~~-~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (115)
T d2atpb1           3 QTPSS-LLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFL   81 (115)
T ss_dssp             EECSE-EEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEE
T ss_pred             eeCCc-EEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEE
Confidence            34555 88999999999997654444566899972     2221   00  0                       45689


Q ss_pred             EEccCCcCCCeEEEEEEEc
Q psy14542         62 VLDRVQREDAGMYQCHVSA   80 (371)
Q Consensus        62 ~i~~~~~~d~G~Y~C~~~~   80 (371)
                      .|.+++.+|+|.|.|.+..
T Consensus        82 ~I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          82 SIMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             EECSCCGGGCEEEEEEEEC
T ss_pred             eecccCCCCCcEEEEeEcC
Confidence            9999999999999998763

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.51  E-value=6.1e-07  Score=60.91  Aligned_cols=68  Identities=26%  Similarity=0.492  Sum_probs=49.8

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe---CCEE--Eee-C------------------CeeEEEEccCC
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK---DGLV--LRR-N------------------SDEVLVLDRVQ   67 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~---~~~~--~~~-~------------------~~~~l~i~~~~   67 (371)
                      .|...|.. +.+.+|++++|.|.....  ...+.|||   ++..  +.. .                  ...+|.|.+++
T Consensus         3 ~V~Q~P~~-~~v~~G~~vtl~C~~~~~--~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   79 (113)
T d1h5ba_           3 QVEQSPSA-LSLHEGTDSALRCNFTTT--MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQ   79 (113)
T ss_dssp             SEEEECSE-EEEETTCCEEEEEEESSC--CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCC
T ss_pred             CeEECCCE-EEEcCCCCEEEEEEEecC--CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCC
Confidence            35666777 889999999999976533  35689998   1111  110 0                  55689999999


Q ss_pred             cCCCeEEEEEEEcCC
Q psy14542         68 REDAGMYQCHVSADD   82 (371)
Q Consensus        68 ~~d~G~Y~C~~~~~~   82 (371)
                      .+|+|.|.|.+....
T Consensus        80 ~~Dsa~YyCa~~~~~   94 (113)
T d1h5ba_          80 LEDSGTYFCAAEASS   94 (113)
T ss_dssp             GGGCEEEEEEEECSS
T ss_pred             HhHCEEEEEEecCCC
Confidence            999999999987544

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.51  E-value=5.4e-07  Score=60.68  Aligned_cols=69  Identities=23%  Similarity=0.492  Sum_probs=50.6

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC-----CEEEeeC------------------CeeEEEEccC
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD-----GLVLRRN------------------SDEVLVLDRV   66 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~-----~~~~~~~------------------~~~~l~i~~~   66 (371)
                      .+.++..|.. +.+.+|++++|.|..... ....+.||+.     -+.+...                  ....|.|.++
T Consensus         3 d~~ltQsP~~-l~~~~G~svtL~C~~s~~-~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l   80 (109)
T d1bwwa_           3 DIQMTQSPSS-LSASVGDRVTITCQASQD-IIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSL   80 (109)
T ss_dssp             CCCEEEECSE-EEECTTCCEEEEEEESSC-CTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             CEeEEeeCCE-EEECCCCCEEEEEEecCC-CCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeec
Confidence            3456667777 889999999999966543 3456889981     1222111                  5568999999


Q ss_pred             CcCCCeEEEEEEEc
Q psy14542         67 QREDAGMYQCHVSA   80 (371)
Q Consensus        67 ~~~d~G~Y~C~~~~   80 (371)
                      +.+|+|.|.|.+..
T Consensus        81 ~~~Dsa~YyCA~~~   94 (109)
T d1bwwa_          81 QPEDIATYYCQQYQ   94 (109)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             eeCcCceEEEeecC
Confidence            99999999998764

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.51  E-value=2e-07  Score=62.57  Aligned_cols=67  Identities=21%  Similarity=0.477  Sum_probs=49.6

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe--CCEE---EeeC------------------CeeEEEEccCCc
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK--DGLV---LRRN------------------SDEVLVLDRVQR   68 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~--~~~~---~~~~------------------~~~~l~i~~~~~   68 (371)
                      .++..|.. +.+.+|++|+|.|... ......+.||+  .|+.   +...                  ...+|.|.+++.
T Consensus         3 ~ltQsP~s-~~~~~G~~vtl~C~~s-~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~   80 (107)
T d3cx5k1           3 ELTQTPVS-LAASLGDRVTISCRAS-QDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEP   80 (107)
T ss_dssp             CEEEESTT-CCBCSSSCCEEEEEES-SCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCS
T ss_pred             CEECcCCE-EEECCCCCEEEEEEcC-CCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeee
Confidence            46677777 8899999999999654 34445699997  1211   1111                  567999999999


Q ss_pred             CCCeEEEEEEEc
Q psy14542         69 EDAGMYQCHVSA   80 (371)
Q Consensus        69 ~d~G~Y~C~~~~   80 (371)
                      +|+|.|.|....
T Consensus        81 ~Dsa~YyCa~~~   92 (107)
T d3cx5k1          81 EDIATYFCQHHI   92 (107)
T ss_dssp             CCCSEEEEEECS
T ss_pred             cCCCcEEeeeCC
Confidence            999999998653

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2.7e-07  Score=62.59  Aligned_cols=63  Identities=22%  Similarity=0.402  Sum_probs=42.1

Q ss_pred             EEEeccCcEEEEEEecCCCC--CCeeE--EEeCCE-EEee---C-------------------CeeEEEEccCCcCCCeE
Q psy14542         21 VVVDVGHRIELHCRVSPKRL--SSAKA--WLKDGL-VLRR---N-------------------SDEVLVLDRVQREDAGM   73 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~--~~~~~--W~~~~~-~~~~---~-------------------~~~~l~i~~~~~~d~G~   73 (371)
                      +.+..|++++|+|.......  ...+.  |.+++. .+..   +                   .+.+|.|.+++.+|+|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            57889999999997653322  22233  444322 1110   0                   55689999999999999


Q ss_pred             EEEEEEcCCC
Q psy14542         74 YQCHVSADDD   83 (371)
Q Consensus        74 Y~C~~~~~~~   83 (371)
                      |.|.+.....
T Consensus        84 Y~C~V~~~~~   93 (110)
T d1ncna_          84 YQCIIHHKKP   93 (110)
T ss_dssp             EEEEEEEECS
T ss_pred             EEEEEEecCC
Confidence            9999975433

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.50  E-value=4.9e-07  Score=60.44  Aligned_cols=66  Identities=29%  Similarity=0.537  Sum_probs=49.0

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--C---EEEeeC------------------CeeEEEEccCCcC
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--G---LVLRRN------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~---~~~~~~------------------~~~~l~i~~~~~~   69 (371)
                      ++..|.. +.+.+|++++|.|.... .....+.||+-  +   +.+...                  ....|.|.+++.+
T Consensus         3 ltQ~P~s-l~~~~G~svtL~C~~~~-~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~   80 (106)
T d1op3k1           3 MTQSPST-LSASVGDTITITCRASQ-SIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFD   80 (106)
T ss_dssp             EEEECSE-EEECTTCEEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGG
T ss_pred             EeCcCCe-EEECCCCCEEEEEEeCC-CCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEcccccc
Confidence            5566777 89999999999996543 33456899972  1   222111                  5678999999999


Q ss_pred             CCeEEEEEEEc
Q psy14542         70 DAGMYQCHVSA   80 (371)
Q Consensus        70 d~G~Y~C~~~~   80 (371)
                      |+|.|.|.+..
T Consensus        81 Dsa~YyCa~~~   91 (106)
T d1op3k1          81 DFATYHCQHYA   91 (106)
T ss_dssp             GCSEEEEEEEC
T ss_pred             CCCcEeeeeCC
Confidence            99999998764

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.50  E-value=2.9e-07  Score=62.85  Aligned_cols=67  Identities=24%  Similarity=0.313  Sum_probs=48.7

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--C---EEEeeC---------------------CeeEEEEccC
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--G---LVLRRN---------------------SDEVLVLDRV   66 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~---~~~~~~---------------------~~~~l~i~~~   66 (371)
                      |+..|.. +.+.+|++++|.|.... .....+.|||-  |   +.+...                     ....|.|.++
T Consensus         3 vtQ~p~~-v~~~~G~~vtl~C~~s~-~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   80 (115)
T d1j8hd1           3 VTQLGSH-VSVSEGALVLLRCNYSS-SVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSA   80 (115)
T ss_dssp             EECSCSE-EEEETTSCEEECCEEEC-SSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSC
T ss_pred             EEcCCCe-EEEcCCCCEEEEEEeCC-CCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccc
Confidence            4555666 88999999999997653 33456999981  1   111111                     4557999999


Q ss_pred             CcCCCeEEEEEEEcC
Q psy14542         67 QREDAGMYQCHVSAD   81 (371)
Q Consensus        67 ~~~d~G~Y~C~~~~~   81 (371)
                      +.+|+|.|.|.+...
T Consensus        81 ~~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          81 HMSDAAEYFCAVSES   95 (115)
T ss_dssp             CGGGCEEEEEEEESS
T ss_pred             cccCCccceeeecCC
Confidence            999999999999754

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=2.1e-07  Score=60.79  Aligned_cols=75  Identities=15%  Similarity=0.211  Sum_probs=52.1

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcC
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNS  296 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  296 (371)
                      .+|.+...+...  +..|++++|.|.........+.|+|+|...............+.|.++..+|+|+|+|.....
T Consensus         4 PkP~Lsa~P~~~--V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2           4 GKPFLSADRGLV--LMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             CCCEEEESSCSE--ECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CCCEEEEeCCCc--cCCCCeEEEEEeCCCCCceEEEEEECCcccceEEcCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            456666655542  899999999998533334578999998643322111122357999999999999999988654

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.49  E-value=4.1e-07  Score=61.72  Aligned_cols=67  Identities=16%  Similarity=0.397  Sum_probs=49.4

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCC-CCCCeeEEEeC--CE---EEee-C-----------CeeEEEEccCCcCCCeEE
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPK-RLSSAKAWLKD--GL---VLRR-N-----------SDEVLVLDRVQREDAGMY   74 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~--~~---~~~~-~-----------~~~~l~i~~~~~~d~G~Y   74 (371)
                      |...|.. +.+.+|++++|.|..... .....+.|||.  +.   .+.. .           ...+|.|.+++.+|+|.|
T Consensus         3 V~Q~P~s-~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   81 (113)
T d1vesa_           3 VDQTPRT-ATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTY   81 (113)
T ss_dssp             EEEECSE-EEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             eEeeCCE-EEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceE
Confidence            5666777 889999999999976533 34456899971  11   1111 1           456899999999999999


Q ss_pred             EEEEEc
Q psy14542         75 QCHVSA   80 (371)
Q Consensus        75 ~C~~~~   80 (371)
                      .|.+..
T Consensus        82 yCa~~~   87 (113)
T d1vesa_          82 KCQAFY   87 (113)
T ss_dssp             EEEEEE
T ss_pred             eeeeec
Confidence            999863

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.48  E-value=5.3e-07  Score=60.37  Aligned_cols=63  Identities=25%  Similarity=0.555  Sum_probs=46.3

Q ss_pred             eCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC-----CEEEeeC------------------CeeEEEEccCCcCCCe
Q psy14542         16 SPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD-----GLVLRRN------------------SDEVLVLDRVQREDAG   72 (371)
Q Consensus        16 ~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~-----~~~~~~~------------------~~~~l~i~~~~~~d~G   72 (371)
                      .|+. +.+.+|++++|.|.... .....+.|||-     -+.+...                  ....|.|.+++.+|+|
T Consensus         6 Qp~s-~~~~~G~svtL~C~~s~-~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa   83 (106)
T d1lk3l1           6 QPPA-LTVSPGEKLTISCKASE-SVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTA   83 (106)
T ss_dssp             CCSE-EEECTTSCEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             eCCe-EEECCCCCEEEEEEeCC-CCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCC
Confidence            3555 78999999999997653 33456999971     1222211                  5679999999999999


Q ss_pred             EEEEEEEc
Q psy14542         73 MYQCHVSA   80 (371)
Q Consensus        73 ~Y~C~~~~   80 (371)
                      .|.|....
T Consensus        84 ~YyCa~~~   91 (106)
T d1lk3l1          84 IYFCQQSW   91 (106)
T ss_dssp             EEEEEECS
T ss_pred             Cccccccc
Confidence            99997653

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.47  E-value=6.6e-07  Score=60.63  Aligned_cols=67  Identities=30%  Similarity=0.530  Sum_probs=47.5

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCC-----CCCeeEEEeC--CE---EEeeC------------------CeeEEEE
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKR-----LSSAKAWLKD--GL---VLRRN------------------SDEVLVL   63 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~-----~~~~~~W~~~--~~---~~~~~------------------~~~~l~i   63 (371)
                      .++..|.. +.+.+|++++|.|......     ....+.|||.  |+   .+...                  ....|.|
T Consensus         3 ~~tQ~P~~-v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I   81 (113)
T d1q9ra1           3 VMSQSPSS-LAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTI   81 (113)
T ss_dssp             CEEEECSE-EEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred             CEEccCCE-EEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEe
Confidence            35566776 8899999999999654321     1234899982  21   11111                  5678999


Q ss_pred             ccCCcCCCeEEEEEEE
Q psy14542         64 DRVQREDAGMYQCHVS   79 (371)
Q Consensus        64 ~~~~~~d~G~Y~C~~~   79 (371)
                      .+++.+|+|.|.|...
T Consensus        82 ~~l~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          82 TSVQAEDLAVYYCKQS   97 (113)
T ss_dssp             SSCCGGGCEEEEEEEC
T ss_pred             cccccCCCeEEEeccc
Confidence            9999999999999865

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2.6e-07  Score=62.94  Aligned_cols=65  Identities=26%  Similarity=0.401  Sum_probs=45.4

Q ss_pred             CCCcEEEeccCcEEEEEEecC-CCCCCeeEEEeC--C---EEEeeC-----------------------CeeEEEEccCC
Q psy14542         17 PSGQVVVDVGHRIELHCRVSP-KRLSSAKAWLKD--G---LVLRRN-----------------------SDEVLVLDRVQ   67 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~-~~~~~~~~W~~~--~---~~~~~~-----------------------~~~~l~i~~~~   67 (371)
                      |+....+.+|++++|.|.... ......+.|+|.  +   ..+...                       ...+|.|.+++
T Consensus         5 pe~~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~   84 (113)
T d1smoa_           5 TEEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQ   84 (113)
T ss_dssp             SEEEEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCC
T ss_pred             ccCcEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCC
Confidence            334467889999999996542 233456889971  1   111110                       44679999999


Q ss_pred             cCCCeEEEEEEEcC
Q psy14542         68 REDAGMYQCHVSAD   81 (371)
Q Consensus        68 ~~d~G~Y~C~~~~~   81 (371)
                      .+|+|.|.|.+...
T Consensus        85 ~~Dsg~Y~Cav~~~   98 (113)
T d1smoa_          85 VEDSGLYQCVIYQP   98 (113)
T ss_dssp             GGGCEEEEEEECCT
T ss_pred             cccCceEEEEEECC
Confidence            99999999998654

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.46  E-value=8.9e-07  Score=59.84  Aligned_cols=64  Identities=22%  Similarity=0.395  Sum_probs=46.4

Q ss_pred             CCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeC-----CEEEeeC------------------CeeEEEEccCCcCCCe
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKD-----GLVLRRN------------------SDEVLVLDRVQREDAG   72 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~-----~~~~~~~------------------~~~~l~i~~~~~~d~G   72 (371)
                      |+. +.+.+|++++|.|...... ....+.||+.     -+.+...                  ....|.|.+++.+|++
T Consensus         7 ~ps-~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA   85 (114)
T d2rhea_           7 PPS-ASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEA   85 (114)
T ss_dssp             CSE-EEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCc-EEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCc
Confidence            444 7899999999999654332 3456899972     1112111                  5689999999999999


Q ss_pred             EEEEEEEcC
Q psy14542         73 MYQCHVSAD   81 (371)
Q Consensus        73 ~Y~C~~~~~   81 (371)
                      .|.|.....
T Consensus        86 ~YyCA~~~~   94 (114)
T d2rhea_          86 DYYCAAWND   94 (114)
T ss_dssp             EEEEEEEET
T ss_pred             eEEEeecCC
Confidence            999998753

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.45  E-value=7.2e-07  Score=60.22  Aligned_cols=68  Identities=25%  Similarity=0.539  Sum_probs=48.7

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCC---CCCeeEEEe--CCE---EEeeC------------------CeeEEEEccC
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKR---LSSAKAWLK--DGL---VLRRN------------------SDEVLVLDRV   66 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~---~~~~~~W~~--~~~---~~~~~------------------~~~~l~i~~~   66 (371)
                      ++.+|.. +.+.+|++++|.|......   ....+.||+  .|+   .+...                  ....|.|.++
T Consensus         4 ltQsP~~-l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   82 (111)
T d1j05a_           4 LTQSPAS-LAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPV   82 (111)
T ss_dssp             EEEECSE-EECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSC
T ss_pred             EEccCCE-EEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEccc
Confidence            4566766 8899999999999654322   223499998  221   12111                  6679999999


Q ss_pred             CcCCCeEEEEEEEcC
Q psy14542         67 QREDAGMYQCHVSAD   81 (371)
Q Consensus        67 ~~~d~G~Y~C~~~~~   81 (371)
                      +.+|+|.|.|.+...
T Consensus        83 ~~~Dsa~YyCa~~~~   97 (111)
T d1j05a_          83 EADDVATYYCQQTNE   97 (111)
T ss_dssp             CGGGCEEEEEEECSS
T ss_pred             ccccCccEEEeecCC
Confidence            999999999987643

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.44  E-value=5.2e-07  Score=60.94  Aligned_cols=66  Identities=18%  Similarity=0.453  Sum_probs=49.4

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe--CC-EE--Ee-eC---------------------CeeEEEEc
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK--DG-LV--LR-RN---------------------SDEVLVLD   64 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~--~~-~~--~~-~~---------------------~~~~l~i~   64 (371)
                      .|+..|.. ..+.+|++++|.|....+  ...+.|||  .| ..  +. ..                     ....|.|.
T Consensus         3 ~V~Q~P~~-~~~~~G~~vtl~C~~s~~--~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~   79 (110)
T d2aq2a1           3 AVTQSPRN-KVAVTGEKVTLSCQQTNN--HNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILE   79 (110)
T ss_dssp             SEEEECSE-EEECTTCCEEEEEEESSC--CSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEES
T ss_pred             CEEEeCCe-EEEcCCCCEEEEEEECCC--cCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEEC
Confidence            46667777 889999999999975543  35699998  12 11  11 10                     56789999


Q ss_pred             cCCcCCCeEEEEEEEc
Q psy14542         65 RVQREDAGMYQCHVSA   80 (371)
Q Consensus        65 ~~~~~d~G~Y~C~~~~   80 (371)
                      +++.+|+|.|.|.+..
T Consensus        80 ~~~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          80 SATPSQTSVYFCASGG   95 (110)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             CCCHhhCEEEEEeeCC
Confidence            9999999999998764

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.43  E-value=4.6e-07  Score=61.35  Aligned_cols=67  Identities=24%  Similarity=0.361  Sum_probs=48.2

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--C---EEEeeC--------------------CeeEEEEccCC
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--G---LVLRRN--------------------SDEVLVLDRVQ   67 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~---~~~~~~--------------------~~~~l~i~~~~   67 (371)
                      |+..|.. +.+.+|++++|.|..... ....+.||+-  |   ..+...                    ...+|.|.+++
T Consensus         2 V~Q~P~~-~~~~~G~~vtl~C~~~~~-~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   79 (110)
T d1u3ha1           2 VRQSPQS-LTVWEGETAILNCSYENS-AFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQ   79 (110)
T ss_dssp             EECSCSS-EEEETTSCEEEEEEECCT-TEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCC
T ss_pred             cEecCCE-EEEcCCCCEEEEEEecCC-CCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCC
Confidence            4556777 889999999999965433 3345899972  1   111100                    55789999999


Q ss_pred             cCCCeEEEEEEEcC
Q psy14542         68 REDAGMYQCHVSAD   81 (371)
Q Consensus        68 ~~d~G~Y~C~~~~~   81 (371)
                      .+|+|.|.|.+...
T Consensus        80 ~~Dsa~YyCa~~~~   93 (110)
T d1u3ha1          80 PGDSATYFCAASAN   93 (110)
T ss_dssp             TTSCSEEEECCEES
T ss_pred             CCCceeEeeeecCC
Confidence            99999999998643

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.42  E-value=7.9e-07  Score=60.14  Aligned_cols=66  Identities=26%  Similarity=0.497  Sum_probs=47.0

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--CE---EEee---------C--------------CeeEEEEc
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--GL---VLRR---------N--------------SDEVLVLD   64 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~~---~~~~---------~--------------~~~~l~i~   64 (371)
                      |+..|.. ..+.+|++++|.|.....  ...+.|||-  |+   .+..         .              ....|.|.
T Consensus         2 VtQ~P~~-~~~~~G~svtl~C~~~~~--~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~   78 (111)
T d2esve1           2 VTQFPSH-SVIEKGQTVTLRCDPISG--HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQ   78 (111)
T ss_dssp             CEEECSE-EEEETTCCEEEEEECCTT--CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEES
T ss_pred             cEECCCE-EEECCCCCEEEEEEECCC--CceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEEC
Confidence            3455666 889999999999964432  356999971  11   1110         0              34689999


Q ss_pred             cCCcCCCeEEEEEEEcC
Q psy14542         65 RVQREDAGMYQCHVSAD   81 (371)
Q Consensus        65 ~~~~~d~G~Y~C~~~~~   81 (371)
                      +++.+|+|.|.|.+...
T Consensus        79 ~~~~~Dsa~YyCa~~~~   95 (111)
T d2esve1          79 PAELEDSGVYFCASSQD   95 (111)
T ss_dssp             SCCGGGCEEEEEEEESS
T ss_pred             CcccCCCceEEEeeeCC
Confidence            99999999999987643

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.41  E-value=2.5e-06  Score=57.61  Aligned_cols=68  Identities=26%  Similarity=0.496  Sum_probs=48.6

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCC----CCCCeeEEEeC--C---EEEeeC------------------CeeEEEEc
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPK----RLSSAKAWLKD--G---LVLRRN------------------SDEVLVLD   64 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~----~~~~~~~W~~~--~---~~~~~~------------------~~~~l~i~   64 (371)
                      .++..|.. +.+.+|++|+|.|.....    .....+.||+-  |   ..+...                  ...+|.|.
T Consensus         4 ~ltQ~P~s-~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~   82 (113)
T d1n4xl_           4 LMTQTPLY-LPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKIS   82 (113)
T ss_dssp             CEEEECSE-EEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEES
T ss_pred             eEeCcCCE-EEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccC
Confidence            35666776 889999999999965432    22245899971  1   111111                  56799999


Q ss_pred             cCCcCCCeEEEEEEEc
Q psy14542         65 RVQREDAGMYQCHVSA   80 (371)
Q Consensus        65 ~~~~~d~G~Y~C~~~~   80 (371)
                      +++.+|+|.|.|....
T Consensus        83 ~~~~~DsavYyCa~~~   98 (113)
T d1n4xl_          83 RVEAEDLGIYYCFQGS   98 (113)
T ss_dssp             SCCGGGCEEEEEEECS
T ss_pred             CCCcccCEEEEEEECC
Confidence            9999999999997653

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.41  E-value=6.4e-07  Score=60.91  Aligned_cols=66  Identities=27%  Similarity=0.473  Sum_probs=48.7

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe--CCE--E-Ee-eC-------------------CeeEEEEccCC
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK--DGL--V-LR-RN-------------------SDEVLVLDRVQ   67 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~--~~~--~-~~-~~-------------------~~~~l~i~~~~   67 (371)
                      |+..|.. +.+.+|++++|.|.....  ...+.||+  .|.  . +. ..                   ...+|.|.+++
T Consensus         3 l~Q~P~~-~~~~~G~svtl~C~~s~~--~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   79 (115)
T d1ogad1           3 LEQSPQF-LSIQEGENLTVYCNSSSV--FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQ   79 (115)
T ss_dssp             CEEECSE-EEEETTCCEEEEEECSSC--CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCC
T ss_pred             eEeCCCe-EEECCCCCEEEEEEECCC--CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCC
Confidence            4566776 889999999999975433  34699998  111  1 10 00                   67899999999


Q ss_pred             cCCCeEEEEEEEcC
Q psy14542         68 REDAGMYQCHVSAD   81 (371)
Q Consensus        68 ~~d~G~Y~C~~~~~   81 (371)
                      .+|+|.|.|.+...
T Consensus        80 ~~Dsa~YyCa~~~~   93 (115)
T d1ogad1          80 PGDTGLYLCAGAGS   93 (115)
T ss_dssp             GGGCEEEEEEEECT
T ss_pred             ccceeeEcccccCC
Confidence            99999999988744

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.40  E-value=9.1e-07  Score=59.93  Aligned_cols=64  Identities=19%  Similarity=0.372  Sum_probs=46.5

Q ss_pred             eCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--C---EEEeeC------------------CeeEEEEccCCcCCCe
Q psy14542         16 SPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--G---LVLRRN------------------SDEVLVLDRVQREDAG   72 (371)
Q Consensus        16 ~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~---~~~~~~------------------~~~~l~i~~~~~~d~G   72 (371)
                      .|.. +.+.+|++|+|.|..........+.|||-  |   +.+...                  ....|.|.+++.+|+|
T Consensus         4 qP~~-~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa   82 (112)
T d1kgcd1           4 QPNS-MESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAA   82 (112)
T ss_dssp             CCSE-EEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCE
T ss_pred             CCCE-EEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccce
Confidence            4555 88999999999997554333445899981  1   111111                  5678999999999999


Q ss_pred             EEEEEEEc
Q psy14542         73 MYQCHVSA   80 (371)
Q Consensus        73 ~Y~C~~~~   80 (371)
                      .|.|.+..
T Consensus        83 ~YyCa~~~   90 (112)
T d1kgcd1          83 VYYCILPL   90 (112)
T ss_dssp             EEEEECCC
T ss_pred             eEeeeEec
Confidence            99998754

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.40  E-value=1.6e-06  Score=58.76  Aligned_cols=67  Identities=18%  Similarity=0.316  Sum_probs=48.7

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe---CCEE--EeeC----------------------CeeEEEEc
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK---DGLV--LRRN----------------------SDEVLVLD   64 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~---~~~~--~~~~----------------------~~~~l~i~   64 (371)
                      .|...|.. +.+.+|++++|.|....+  ...+.|||   +...  +...                      ....|.|.
T Consensus         2 ~V~QsP~~-~~~~~G~~v~l~C~~~~~--~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~   78 (113)
T d1j8he1           2 KVTQSSRY-LVKRTGEKVFLECVQDMD--HENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILE   78 (113)
T ss_dssp             CEEESCSE-EEEETTCCEEECEEESSC--CSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEES
T ss_pred             EEEccCCE-EEECCCCCEEEEEEEcCC--ccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEec
Confidence            45666776 889999999999965433  35689998   2211  1110                      44689999


Q ss_pred             cCCcCCCeEEEEEEEcC
Q psy14542         65 RVQREDAGMYQCHVSAD   81 (371)
Q Consensus        65 ~~~~~d~G~Y~C~~~~~   81 (371)
                      +++.+|+|.|.|.+...
T Consensus        79 ~~~~~Dsa~YyCa~~~~   95 (113)
T d1j8he1          79 SASTNQTSMYLCASSST   95 (113)
T ss_dssp             SCCGGGCEEEEEEEECT
T ss_pred             cCccCCcccEEeeEccC
Confidence            99999999999998754

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.40  E-value=9e-07  Score=59.79  Aligned_cols=64  Identities=17%  Similarity=0.360  Sum_probs=46.8

Q ss_pred             CCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeC-----CEEEeeC------------------CeeEEEEccCCcCCCe
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKD-----GLVLRRN------------------SDEVLVLDRVQREDAG   72 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~-----~~~~~~~------------------~~~~l~i~~~~~~d~G   72 (371)
                      |+. +.+.+|++++|.|...... ....+.||+-     -+.+...                  ...+|.|.+++.+|+|
T Consensus         7 p~s-~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa   85 (111)
T d1rzfl1           7 PPS-VSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEA   85 (111)
T ss_dssp             CSE-EEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             Ccc-eEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCc
Confidence            555 8899999999999765432 3445999971     1112111                  5689999999999999


Q ss_pred             EEEEEEEcC
Q psy14542         73 MYQCHVSAD   81 (371)
Q Consensus        73 ~Y~C~~~~~   81 (371)
                      .|.|.+...
T Consensus        86 ~YyCA~~~~   94 (111)
T d1rzfl1          86 DYYCGTWDS   94 (111)
T ss_dssp             EEEEEEEET
T ss_pred             ceEEeecCC
Confidence            999998754

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.40  E-value=1.9e-06  Score=58.34  Aligned_cols=66  Identities=18%  Similarity=0.291  Sum_probs=47.8

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe---CCEE--E---eeC-------------------CeeEEEEcc
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK---DGLV--L---RRN-------------------SDEVLVLDR   65 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~---~~~~--~---~~~-------------------~~~~l~i~~   65 (371)
                      |+..|.. ..+.+|++++|.|....+  ...+.|||   +...  +   ...                   ....|.|.+
T Consensus         2 VtQ~P~~-~~~~~G~svtl~C~~s~~--~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   78 (112)
T d2bnub1           2 VTQTPKF-QVLKTGQSMTLQCAQDMN--HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLS   78 (112)
T ss_dssp             EEEECSE-EEEETTCCEEEEEEESSC--CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESS
T ss_pred             eEECCCe-EEECCCCCEEEEEEEECC--ccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECC
Confidence            4455666 789999999999976533  45699998   2221  1   000                   346899999


Q ss_pred             CCcCCCeEEEEEEEcC
Q psy14542         66 VQREDAGMYQCHVSAD   81 (371)
Q Consensus        66 ~~~~d~G~Y~C~~~~~   81 (371)
                      ++.+|+|.|.|.+...
T Consensus        79 ~~~~DsavYyCA~~~~   94 (112)
T d2bnub1          79 AAPSQTSVYFCASSYV   94 (112)
T ss_dssp             CCGGGCEEEEEEEECS
T ss_pred             CCHHHCEEEEEeecCC
Confidence            9999999999987643

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.40  E-value=2.7e-06  Score=57.54  Aligned_cols=65  Identities=26%  Similarity=0.430  Sum_probs=47.0

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe---CC--EEEee---C--------------------CeeEEEEc
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK---DG--LVLRR---N--------------------SDEVLVLD   64 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~---~~--~~~~~---~--------------------~~~~l~i~   64 (371)
                      |+..|.. ..+.+|++++|.|....+  ...+.|||   +.  +.+..   .                    ...+|.|.
T Consensus         2 VtQ~P~~-~~~~~G~svtl~C~~~~~--~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~   78 (112)
T d1kgce1           2 VSQSPRY-KVAKRGQDVALRCDPISG--HVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQ   78 (112)
T ss_dssp             CEEECSE-EEEETTCCEEEEEECCTT--CCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEES
T ss_pred             eEECCCe-EEECCCCCEEEEEEECCC--CCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEEC
Confidence            3455666 789999999999964433  35699998   11  11110   0                    45789999


Q ss_pred             cCCcCCCeEEEEEEEc
Q psy14542         65 RVQREDAGMYQCHVSA   80 (371)
Q Consensus        65 ~~~~~d~G~Y~C~~~~   80 (371)
                      +++.+|+|.|.|.+..
T Consensus        79 ~~~~~Dsa~YyCa~~~   94 (112)
T d1kgce1          79 RTQQEDSAVYLCASSL   94 (112)
T ss_dssp             SCCGGGCEEEEEEEES
T ss_pred             CCCcCCCEEEEEeeeC
Confidence            9999999999999864

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.39  E-value=4.6e-07  Score=61.79  Aligned_cols=66  Identities=24%  Similarity=0.373  Sum_probs=47.0

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe--CC---EEEee---C------------------CeeEEEEccC
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK--DG---LVLRR---N------------------SDEVLVLDRV   66 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~--~~---~~~~~---~------------------~~~~l~i~~~   66 (371)
                      |+..|.. +.+.+|++++|.|..... ....+.|||  .+   ..+..   .                  ....|.|.++
T Consensus         3 V~Q~~~~-v~v~~G~svtl~C~~~~~-~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   80 (115)
T d1i9ea_           3 VTQPDAR-VTVSEGASLQLRCKYSYS-ATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASV   80 (115)
T ss_dssp             EECCCSE-EEEETTSCEEECCEEECS-SCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSC
T ss_pred             EEcCCCe-EEECCCCCEEEEEEEcCC-CCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccc
Confidence            4444444 889999999999965533 345678987  11   11211   1                  5568999999


Q ss_pred             CcCCCeEEEEEEEc
Q psy14542         67 QREDAGMYQCHVSA   80 (371)
Q Consensus        67 ~~~d~G~Y~C~~~~   80 (371)
                      +.+|+|.|.|.+..
T Consensus        81 ~~~Dsg~YyCa~~~   94 (115)
T d1i9ea_          81 HWSDSAVYFCAVSG   94 (115)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             cccccceecccccC
Confidence            99999999998764

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=5.7e-07  Score=58.29  Aligned_cols=72  Identities=11%  Similarity=0.206  Sum_probs=50.5

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEE
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVAN  294 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  294 (371)
                      .+|.+...+...  +..|++++|.|... .....+.|+|+|...............+.|.++..+|+|+|+|...
T Consensus         3 pkPsLsa~P~~~--V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2           3 DTPTLSVHPGPE--VISGEKVTFYCRLD-TATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             CCCEEEEESCSE--EETTCEEEEEEECS-SSCSEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CCCEEEEeCCCc--ccCCCcEEEEECCC-CCCCEEEEEECCCccceeecCCCceeEEEecccChhcCceEEEEeE
Confidence            356666655543  89999999999864 3445799999876432221111133579999999999999999754

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.38  E-value=2.7e-06  Score=57.23  Aligned_cols=67  Identities=28%  Similarity=0.507  Sum_probs=47.8

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCC----CCCCeeEEEeC--C---EEEeeC------------------CeeEEEEc
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPK----RLSSAKAWLKD--G---LVLRRN------------------SDEVLVLD   64 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~----~~~~~~~W~~~--~---~~~~~~------------------~~~~l~i~   64 (371)
                      .++..|.. +.+.+|++|+|.|+....    .....+.||+.  |   +.+...                  ....|.|.
T Consensus         3 ~lTQsP~s-ls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~   81 (112)
T d1ncwl1           3 VMTQSPKT-ISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKIS   81 (112)
T ss_dssp             CEEEECSE-EEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             cEeCcCCE-EEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEEC
Confidence            35666777 889999999999975432    12345889972  1   111111                  55689999


Q ss_pred             cCCcCCCeEEEEEEE
Q psy14542         65 RVQREDAGMYQCHVS   79 (371)
Q Consensus        65 ~~~~~d~G~Y~C~~~   79 (371)
                      +++.+|+|.|.|...
T Consensus        82 ~~~~eDsAvYYC~~~   96 (112)
T d1ncwl1          82 RVEAEDLGVYYCWQG   96 (112)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             ccccCcCEeEEEEcC
Confidence            999999999999654

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=2.4e-07  Score=61.22  Aligned_cols=62  Identities=23%  Similarity=0.358  Sum_probs=44.7

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCccc--------------ccCCceEE-------ecceEEEeccCCCCCeEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDSPV--------------EESDRIQR-------IGSSLSISHVEESDSGVWNCV  292 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~--------------~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~  292 (371)
                      ..+|++++|.|.........+.|++.....              ....++..       .+.+|.|.+++.+|+|.|.|.
T Consensus         6 ~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C~   85 (97)
T d2nxyb1           6 GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICE   85 (97)
T ss_dssp             EETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEEE
T ss_pred             EEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEEEE
Confidence            778999999999876666789999754311              00112210       123699999999999999999


Q ss_pred             EEc
Q psy14542        293 ANN  295 (371)
Q Consensus       293 a~n  295 (371)
                      +.+
T Consensus        86 v~~   88 (97)
T d2nxyb1          86 VED   88 (97)
T ss_dssp             ETT
T ss_pred             Eec
Confidence            965

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.37  E-value=9.1e-07  Score=58.87  Aligned_cols=62  Identities=23%  Similarity=0.455  Sum_probs=45.1

Q ss_pred             CCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--C---EEEeeC------------------CeeEEEEccCCcCCCeE
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--G---LVLRRN------------------SDEVLVLDRVQREDAGM   73 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~---~~~~~~------------------~~~~l~i~~~~~~d~G~   73 (371)
                      |+. +.+.+|++|+|.|.... .....+.|||-  |   ..+...                  ....|.|.+++.+|+|.
T Consensus         5 p~s-l~~~~G~svtl~C~~~~-~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~   82 (103)
T d8faba1           5 PPS-VSVSPGQTARITCSANA-LPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEAD   82 (103)
T ss_dssp             CSE-EEECTTSCEEEEEECTT-GGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEE
T ss_pred             CCe-EEECCCCCEEEEEEeCC-CCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCce
Confidence            444 78999999999996543 33456899981  1   111111                  66899999999999999


Q ss_pred             EEEEEEc
Q psy14542         74 YQCHVSA   80 (371)
Q Consensus        74 Y~C~~~~   80 (371)
                      |.|.+..
T Consensus        83 YyCA~~~   89 (103)
T d8faba1          83 YYCQAWD   89 (103)
T ss_dssp             EEEEEEE
T ss_pred             EEeeecC
Confidence            9998764

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.37  E-value=1.7e-06  Score=58.52  Aligned_cols=66  Identities=18%  Similarity=0.293  Sum_probs=48.1

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--C---EEEee-----------C---------CeeEEEEccCC
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--G---LVLRR-----------N---------SDEVLVLDRVQ   67 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~---~~~~~-----------~---------~~~~l~i~~~~   67 (371)
                      |...|.. +.+.+|++++|.|..... ....+.||+-  |   ..+..           .         ...+|.|.+++
T Consensus         3 v~Q~p~s-~~~~~G~svtl~C~~s~~-~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (111)
T d1bd2d1           3 VKQNSPS-LSVQEGRISILNCDYTNS-MFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQ   80 (111)
T ss_dssp             EECCCSE-EEEETTSCEEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred             eEccCCE-EEEcCCCCEEEEEEeCCC-CCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCc
Confidence            4555666 789999999999965543 3445889871  1   11110           0         67899999999


Q ss_pred             cCCCeEEEEEEEc
Q psy14542         68 REDAGMYQCHVSA   80 (371)
Q Consensus        68 ~~d~G~Y~C~~~~   80 (371)
                      .+|+|.|.|.+..
T Consensus        81 ~~Dsa~YyCa~~~   93 (111)
T d1bd2d1          81 PGDSAVYFCAAME   93 (111)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             ccccEEEEeeccC
Confidence            9999999998874

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.36  E-value=1.9e-06  Score=58.89  Aligned_cols=67  Identities=22%  Similarity=0.461  Sum_probs=48.7

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe--CCE--E-Eee---C---------------------CeeEEEE
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK--DGL--V-LRR---N---------------------SDEVLVL   63 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~--~~~--~-~~~---~---------------------~~~~l~i   63 (371)
                      |+..|.. ..+.+|++++|.|.... .....+.|||  .|+  . +..   .                     ....|.|
T Consensus         4 v~Q~P~~-~~~~~G~~v~L~C~~~~-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i   81 (118)
T d2ij0c1           4 VSQHPSM-VIVKSGTSVKIECRSLD-TNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTV   81 (118)
T ss_dssp             EEEECSE-EEECTTCCEEEEEEECS-SCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEE
T ss_pred             EEEcCCe-EEEcCCCCEEEEEEEcC-CcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccc
Confidence            5566666 78999999999996543 3446799998  121  1 110   0                     3467999


Q ss_pred             ccCCcCCCeEEEEEEEcC
Q psy14542         64 DRVQREDAGMYQCHVSAD   81 (371)
Q Consensus        64 ~~~~~~d~G~Y~C~~~~~   81 (371)
                      .+++.+|+|.|.|.+...
T Consensus        82 ~~~~~~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          82 TSAHPEDSGFYVCSALAG   99 (118)
T ss_dssp             CSCCGGGCEEEEEEEECS
T ss_pred             cccccccCceEEEEEecC
Confidence            999999999999998643

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.36  E-value=1.6e-06  Score=58.79  Aligned_cols=65  Identities=17%  Similarity=0.368  Sum_probs=47.4

Q ss_pred             EEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe---CCEE--Eee---C-------------------CeeEEEEccC
Q psy14542         14 EMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK---DGLV--LRR---N-------------------SDEVLVLDRV   66 (371)
Q Consensus        14 ~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~---~~~~--~~~---~-------------------~~~~l~i~~~   66 (371)
                      +..|.. ..+.+|++++|.|....+  ...+.|||   +...  +..   .                   ...+|.|.++
T Consensus         3 tQ~P~~-~~~~~G~svtl~C~~~~~--~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   79 (113)
T d2ntsp1           3 TQTPRY-LIKTRGQQVTLSCSPISG--HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTL   79 (113)
T ss_dssp             EEECSE-EEEETTCCEEEEEECSTT--CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSC
T ss_pred             EeCCCe-EEECCCCCEEEEEEECCC--CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCC
Confidence            445666 789999999999975433  35689998   2211  110   0                   4568999999


Q ss_pred             CcCCCeEEEEEEEcC
Q psy14542         67 QREDAGMYQCHVSAD   81 (371)
Q Consensus        67 ~~~d~G~Y~C~~~~~   81 (371)
                      +.+|+|.|.|.+...
T Consensus        80 ~~~Dsa~YyCA~~~~   94 (113)
T d2ntsp1          80 ELGDSALYLCASSLA   94 (113)
T ss_dssp             CGGGCEEEEEEEESS
T ss_pred             CcccceeeeeeeeCC
Confidence            999999999998743

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=1.5e-06  Score=59.69  Aligned_cols=65  Identities=23%  Similarity=0.307  Sum_probs=44.6

Q ss_pred             CCCcEEEeccCcEEEEEEecCC--C---CCCeeEEEeC----CEEEeeC----------------------CeeEEEEcc
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPK--R---LSSAKAWLKD----GLVLRRN----------------------SDEVLVLDR   65 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~--~---~~~~~~W~~~----~~~~~~~----------------------~~~~l~i~~   65 (371)
                      |+. +.+.+|+.|+|+|.....  .   ....+.|++.    ...+...                      .+.+|.|.+
T Consensus         7 P~~-v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~   85 (118)
T d1qfoa_           7 PKN-VQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD   85 (118)
T ss_dssp             CSE-EEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             CCE-EEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECC
Confidence            444 899999999999976421  1   1233567762    1111111                      567899999


Q ss_pred             CCcCCCeEEEEEEEcCC
Q psy14542         66 VQREDAGMYQCHVSADD   82 (371)
Q Consensus        66 ~~~~d~G~Y~C~~~~~~   82 (371)
                      ++.+|+|.|.|.+....
T Consensus        86 v~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          86 LKPEDSGTYNFRFEISD  102 (118)
T ss_dssp             CCGGGCEEEEEEEECC-
T ss_pred             CChhHCEEEEEEEEeCC
Confidence            99999999999997654

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.34  E-value=1.3e-06  Score=60.14  Aligned_cols=72  Identities=15%  Similarity=0.231  Sum_probs=50.0

Q ss_pred             cceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeC--Ccccc----------------------cCCceEE--e-c-
Q psy14542        222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQ--DSPVE----------------------ESDRIQR--I-G-  273 (371)
Q Consensus       222 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~~----------------------~~~~~~~--~-~-  273 (371)
                      |.+...|.... +.+|++++|.|.+.+.....+.|++-  |..+.                      ...++..  . + 
T Consensus         2 ~~~~~~P~~~~-~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           2 PELRIFPKKMD-AELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CEEEEESSCEE-ECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CceEEcCCEEE-ECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            44555566666 89999999999988777778999872  22110                      0011111  1 1 


Q ss_pred             -ceEEEeccCCCCCeEEEEEEE
Q psy14542        274 -SSLSISHVEESDSGVWNCVAN  294 (371)
Q Consensus       274 -~~l~i~~~~~~d~G~Y~C~a~  294 (371)
                       .+|.|.+++.+|+|.|.|.+.
T Consensus        81 ~~~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          81 KYVLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEE
T ss_pred             EeEEEEcccccCCCEEEEeeEe
Confidence             269999999999999999875

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.34  E-value=1.6e-06  Score=58.95  Aligned_cols=69  Identities=26%  Similarity=0.530  Sum_probs=47.8

Q ss_pred             eeeeeeecCCeEEEEEEeecCCCCceEEEeCCc--cc------------ccCCceEE------ecceEEEeccCCCCCeE
Q psy14542        229 HRILNVKKDESVILPCSAQGNPLPTIKWYKQDS--PV------------EESDRIQR------IGSSLSISHVEESDSGV  288 (371)
Q Consensus       229 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~--~~------------~~~~~~~~------~~~~l~i~~~~~~d~G~  288 (371)
                      .... +.+|+.++|.|.........+.|++...  ..            ....++..      ...+|.|.++..+|+|.
T Consensus         8 ~~~~-~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~   86 (114)
T d2cdea1           8 QSLI-ILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSAS   86 (114)
T ss_dssp             SEEE-EETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSE
T ss_pred             CEEE-EeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCcc
Confidence            3344 8999999999998766666799997321  11            01122221      12369999999999999


Q ss_pred             EEEEEEcCCC
Q psy14542        289 WNCVANNSEG  298 (371)
Q Consensus       289 Y~C~a~n~~g  298 (371)
                      |.|.+....+
T Consensus        87 Y~Ca~~~~~~   96 (114)
T d2cdea1          87 YICVVSDRGS   96 (114)
T ss_dssp             EEEEEECSCT
T ss_pred             cceeeecCCC
Confidence            9999987543

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.34  E-value=2.3e-06  Score=57.75  Aligned_cols=66  Identities=26%  Similarity=0.456  Sum_probs=46.7

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCC----CCCeeEEEeC--C---EEEeeC------------------CeeEEEEcc
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKR----LSSAKAWLKD--G---LVLRRN------------------SDEVLVLDR   65 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~----~~~~~~W~~~--~---~~~~~~------------------~~~~l~i~~   65 (371)
                      ++..|.. +.+.+|++|+|.|....+.    ....+.||+.  |   ..+...                  ....|.|.+
T Consensus         4 lTQ~p~s-lsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~   82 (112)
T d1mjul1           4 MTQAAPS-VPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISR   82 (112)
T ss_dssp             EECCCSE-EEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESS
T ss_pred             eEecCCE-EEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECC
Confidence            4445555 7899999999999765431    2345899871  1   111111                  567899999


Q ss_pred             CCcCCCeEEEEEEE
Q psy14542         66 VQREDAGMYQCHVS   79 (371)
Q Consensus        66 ~~~~d~G~Y~C~~~   79 (371)
                      ++.+|++.|.|...
T Consensus        83 ~~~~DsAvYyCa~~   96 (112)
T d1mjul1          83 VEAEDVGVYYCLQH   96 (112)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             ccccCCceEEEEeC
Confidence            99999999999654

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.32  E-value=1.3e-06  Score=58.51  Aligned_cols=63  Identities=25%  Similarity=0.491  Sum_probs=45.8

Q ss_pred             CCCcEEEeccCcEEEEEEecCCCCC--CeeEEEe---CCEE--EeeC------------------CeeEEEEccCCcCCC
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKRLS--SAKAWLK---DGLV--LRRN------------------SDEVLVLDRVQREDA   71 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~~~--~~~~W~~---~~~~--~~~~------------------~~~~l~i~~~~~~d~   71 (371)
                      |+. +.+.+|++++|.|....+...  ..+.||+   +...  +...                  ....|.|.+++.+|+
T Consensus         7 ~~s-lsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Ds   85 (110)
T d1oaql_           7 ESA-LTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDE   85 (110)
T ss_dssp             CSE-EEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred             CCC-EEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCcccc
Confidence            344 789999999999976544322  2388997   2222  1111                  677899999999999


Q ss_pred             eEEEEEEEc
Q psy14542         72 GMYQCHVSA   80 (371)
Q Consensus        72 G~Y~C~~~~   80 (371)
                      |.|.|....
T Consensus        86 a~YyCa~~~   94 (110)
T d1oaql_          86 AIYFCALWY   94 (110)
T ss_dssp             EEEEEEEEE
T ss_pred             EeEEEEccc
Confidence            999999764

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.32  E-value=1e-06  Score=60.09  Aligned_cols=66  Identities=30%  Similarity=0.515  Sum_probs=47.7

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC-----CEEEeeC------------------CeeEEEEccCCcC
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD-----GLVLRRN------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~-----~~~~~~~------------------~~~~l~i~~~~~~   69 (371)
                      |+..|.. +.+.+|++++|.|... ......+.|||.     ...+...                  ....|.|.+++.+
T Consensus         4 ltQ~P~s-v~~~~G~svtl~C~~s-~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~   81 (119)
T d1f3rb2           4 LTQSPSL-LSASVGDRVTLSCKGS-QNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPE   81 (119)
T ss_dssp             SCEETSE-ECCCTTCCEEEEEECS-SCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGG
T ss_pred             EEccCCE-EEECCCCCEEEEEEeC-CCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccC
Confidence            4455666 7799999999999654 333445899982     2222211                  5568999999999


Q ss_pred             CCeEEEEEEEc
Q psy14542         70 DAGMYQCHVSA   80 (371)
Q Consensus        70 d~G~Y~C~~~~   80 (371)
                      |+|.|.|....
T Consensus        82 DsavYyCa~~~   92 (119)
T d1f3rb2          82 DVATYFCYQYN   92 (119)
T ss_dssp             GCSEEEEEEES
T ss_pred             CCeEEEeeccC
Confidence            99999998753

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.30  E-value=2.6e-06  Score=57.59  Aligned_cols=65  Identities=22%  Similarity=0.397  Sum_probs=47.0

Q ss_pred             CCCcEEEeccCcEEEEEEecCCC--CCCeeEEEeC--C---EEEeeC------------------CeeEEEEccCCcCCC
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKR--LSSAKAWLKD--G---LVLRRN------------------SDEVLVLDRVQREDA   71 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~--~~~~~~W~~~--~---~~~~~~------------------~~~~l~i~~~~~~d~   71 (371)
                      |+. +.+.+|++++|.|......  ....+.|||.  +   ..+...                  ....|.|.+++.+|+
T Consensus         7 P~s-~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   85 (112)
T d1lgva1           7 PAS-VSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDE   85 (112)
T ss_dssp             CSE-EEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             CCc-EEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccC
Confidence            555 8899999999999655432  2235899981  1   112111                  677899999999999


Q ss_pred             eEEEEEEEcCC
Q psy14542         72 GMYQCHVSADD   82 (371)
Q Consensus        72 G~Y~C~~~~~~   82 (371)
                      |.|.|.+....
T Consensus        86 a~YyCa~~~~~   96 (112)
T d1lgva1          86 ADYYCSSYDGS   96 (112)
T ss_dssp             EEEEEEEECSS
T ss_pred             EEEEEeeecCC
Confidence            99999887543

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.30  E-value=1.6e-06  Score=57.99  Aligned_cols=63  Identities=24%  Similarity=0.449  Sum_probs=45.8

Q ss_pred             CCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--C---EEEeeC------------------CeeEEEEccCCcCCCeE
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--G---LVLRRN------------------SDEVLVLDRVQREDAGM   73 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~---~~~~~~------------------~~~~l~i~~~~~~d~G~   73 (371)
                      |+. +.+.+|++++|.|.... .....+.|||.  +   +.+...                  ....|.|.+++.+|+|.
T Consensus         7 p~s-l~~~~G~svtl~C~~~~-~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsav   84 (109)
T d1w72l1           7 PPS-VSVAPGQTARITCGGNN-IGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEAD   84 (109)
T ss_dssp             CSE-EEECTTSCEEEEEECTT-GGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CCe-EEECCCCCEEEEEEcCC-CCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEE
Confidence            444 78999999999996443 23446999971  1   122111                  56789999999999999


Q ss_pred             EEEEEEcC
Q psy14542         74 YQCHVSAD   81 (371)
Q Consensus        74 Y~C~~~~~   81 (371)
                      |.|.+...
T Consensus        85 YyCA~~~~   92 (109)
T d1w72l1          85 YYCQVWDS   92 (109)
T ss_dssp             EEEEEEET
T ss_pred             EEEEecCC
Confidence            99998754

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.30  E-value=1.7e-06  Score=58.76  Aligned_cols=65  Identities=20%  Similarity=0.370  Sum_probs=47.0

Q ss_pred             EEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--CE--E-Eee-C---------------------CeeEEEEccC
Q psy14542         14 EMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--GL--V-LRR-N---------------------SDEVLVLDRV   66 (371)
Q Consensus        14 ~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~~--~-~~~-~---------------------~~~~l~i~~~   66 (371)
                      +..|.. +.+.+|++++|.|....  ....+.|||-  ++  . +.. .                     ...+|.|.++
T Consensus         3 tQsP~~-~~~~~G~svtl~C~~s~--~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   79 (114)
T d1ogae1           3 TQSPKY-LFRKEGQNVTLSCEQNL--NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSA   79 (114)
T ss_dssp             ECSCSE-EEEETTCCEEECCEECS--CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSC
T ss_pred             EEcCCe-EEEcCCCCEEEEEEEec--CCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcC
Confidence            444565 88999999999997543  3457999971  11  1 110 0                     4567999999


Q ss_pred             CcCCCeEEEEEEEcC
Q psy14542         67 QREDAGMYQCHVSAD   81 (371)
Q Consensus        67 ~~~d~G~Y~C~~~~~   81 (371)
                      +.+|+|.|.|.+...
T Consensus        80 ~~~DSa~YyCa~~~~   94 (114)
T d1ogae1          80 QKNPTAFYLCASSSR   94 (114)
T ss_dssp             CSCCCEEEEEEEESS
T ss_pred             CcCCceeEEEeeccC
Confidence            999999999987754

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.3e-06  Score=58.48  Aligned_cols=84  Identities=13%  Similarity=0.217  Sum_probs=53.5

Q ss_pred             eeeeeeecCCeEEEEEEeecC---CCCceEEEeCCcc--c------------ccCCceEE--e----cceEEEeccCCCC
Q psy14542        229 HRILNVKKDESVILPCSAQGN---PLPTIKWYKQDSP--V------------EESDRIQR--I----GSSLSISHVEESD  285 (371)
Q Consensus       229 ~~~~~~~~g~~~~l~C~~~~~---p~~~v~W~~~~~~--~------------~~~~~~~~--~----~~~l~i~~~~~~d  285 (371)
                      .... +.+|++++|.|.....   ....+.|++....  +            ....++..  .    ..+|.|.+++.+|
T Consensus         7 ~~V~-~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~D   85 (116)
T d1xeda_           7 EEVN-SVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDD   85 (116)
T ss_dssp             SEEE-EETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             CEEE-EcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCC
Confidence            3344 8899999999986432   2245789874321  0            01122221  1    1369999999999


Q ss_pred             CeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542        286 SGVWNCVANNSEGQDKMQLFIQYAHGKY  313 (371)
Q Consensus       286 ~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  313 (371)
                      +|.|.|.+..........+.|.|.+...
T Consensus        86 sG~Y~C~v~~~~~~~~~~v~L~V~~~~~  113 (116)
T d1xeda_          86 SGRYKCGLGINSRGLSFDVSLEVLEHHH  113 (116)
T ss_dssp             CEEEEEEESCGGGCCEEEEEEEEECCCC
T ss_pred             CEEEEEEEEcCCCCceEeEEEEEECCCc
Confidence            9999999876555555667777765543

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.29  E-value=3.9e-06  Score=57.57  Aligned_cols=76  Identities=22%  Similarity=0.295  Sum_probs=48.1

Q ss_pred             eecCCeEEEEEEeec----CCCCceEEEeCCcc------c--------------ccCCceEE------ecceEEEeccCC
Q psy14542        234 VKKDESVILPCSAQG----NPLPTIKWYKQDSP------V--------------EESDRIQR------IGSSLSISHVEE  283 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~----~p~~~v~W~~~~~~------~--------------~~~~~~~~------~~~~l~i~~~~~  283 (371)
                      +..|++++|.|....    .....+.|++....      +              ...+|+..      .+.+|.|.+++.
T Consensus        11 a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   90 (119)
T d1neua_          11 GAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDY   90 (119)
T ss_dssp             EETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECSCCG
T ss_pred             EeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEECCCCh
Confidence            889999999998753    22346999863210      0              00123332      123799999999


Q ss_pred             CCCeEEEEEEEcCCCC--ceeEEEEEEe
Q psy14542        284 SDSGVWNCVANNSEGQ--DKMQLFIQYA  309 (371)
Q Consensus       284 ~d~G~Y~C~a~n~~g~--~~~~~~l~v~  309 (371)
                      +|+|.|.|.+.+..+.  ....+.|.|.
T Consensus        91 ~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          91 SDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             GGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             HHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            9999999999886543  3445666654

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=1.8e-06  Score=58.60  Aligned_cols=85  Identities=13%  Similarity=0.179  Sum_probs=47.7

Q ss_pred             eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEccc--CcCCCeeEEEEEeCCceeEeccceEEEEEeec
Q psy14542        106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRV--QREDAGMYQCHIEDGKYHMLSSGELIIHQVDE  183 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~  183 (371)
                      ..+.+|++++|.|.+........+.||+...  .......+.+...  .....+.|........    ....|.|.+++.
T Consensus         9 l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~--g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~----~~~~L~I~~~~~   82 (114)
T d3bp5a1           9 LTVSEGANATFTCSLSNWSEDLMLNWNRLSP--SNQTEKQAAFSNGLSQPVQDARFQIIQLPNR----HDFHMNILDTRR   82 (114)
T ss_dssp             EEEETTCCEEEEEEESCCCTTCEEEEEEECT--TCCEEEEEEEETTEEEESSCTTEEEEECTTS----SEEEEEESSCCG
T ss_pred             EEECCCCCEEEEEEECCCCCcceEEEEEECC--CCCCeeeEEeeeccccccccCcceEEEeCCC----CEEEEEECccCc
Confidence            3458999999999986544335789998311  0011111221111  1112222222111110    124699999999


Q ss_pred             CCccceeEEEeecc
Q psy14542        184 SDRYRSYQCRGVNK  197 (371)
Q Consensus       184 ~d~~g~y~C~~~~~  197 (371)
                      +| +|.|.|.+...
T Consensus        83 ~D-sg~YyCa~~~~   95 (114)
T d3bp5a1          83 ND-SGIYLCGAISL   95 (114)
T ss_dssp             GG-CEEEEEEEECS
T ss_pred             CC-CeEEEEEEEeC
Confidence            99 99999987654

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.28  E-value=1.3e-06  Score=57.38  Aligned_cols=81  Identities=16%  Similarity=0.139  Sum_probs=49.0

Q ss_pred             eeEecCCceeeecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceE
Q psy14542         98 VEIASSNQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGEL  176 (371)
Q Consensus        98 ~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l  176 (371)
                      |.+...+...+..|+.++|.|.+.++ |....++|+++|..+....    .........+|.|.         ..  +.|
T Consensus         4 P~V~v~p~~~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~----~~t~~~~~~dgtf~---------~~--s~l   68 (100)
T d1muja1           4 PQATVFPKSPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGV----YETSFFVNRDYSFH---------KL--SYL   68 (100)
T ss_dssp             CEEEEEESSCCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSE----EECCCEECTTSCEE---------EE--EEE
T ss_pred             CEEEEEcCCccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCc----eeeeeEECCCCCEE---------EE--EEe
Confidence            33333333334568899999999987 4458999999998775431    11122223334332         21  334


Q ss_pred             EEEEeecCCccceeEEEeecc
Q psy14542        177 IIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      .+   ...+ ...|+|.+.+.
T Consensus        69 ~v---~~~~-~~~ytC~V~H~   85 (100)
T d1muja1          69 TF---IPSD-DDIYDCKVEHW   85 (100)
T ss_dssp             EE---CCCT-TCCEEEEEECT
T ss_pred             EE---cCCC-CCEEEEEEEEC
Confidence            33   3456 77899999986

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.28  E-value=1.5e-06  Score=58.05  Aligned_cols=67  Identities=21%  Similarity=0.360  Sum_probs=45.9

Q ss_pred             eeeeeeeecCCeEEEEEEeecCCCCceEEEeCC--ccc------------ccCCceEE----ecceEEEeccCCCCCeEE
Q psy14542        228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQD--SPV------------EESDRIQR----IGSSLSISHVEESDSGVW  289 (371)
Q Consensus       228 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~~------------~~~~~~~~----~~~~l~i~~~~~~d~G~Y  289 (371)
                      +.... +.+|++++|.|.........+.|++..  ..+            ....++..    ....|.|.++..+|+|.|
T Consensus         7 P~~l~-~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~Y   85 (106)
T d1a0ql1           7 PSSLS-ASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATY   85 (106)
T ss_dssp             CSEEE-ECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEE
T ss_pred             CCEEE-ECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeE
Confidence            33444 899999999998765555569999732  111            01122322    123699999999999999


Q ss_pred             EEEEEc
Q psy14542        290 NCVANN  295 (371)
Q Consensus       290 ~C~a~n  295 (371)
                      .|.+.+
T Consensus        86 yCa~~~   91 (106)
T d1a0ql1          86 YCLQYY   91 (106)
T ss_dssp             EEEECS
T ss_pred             EEEEeC
Confidence            998754

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.27  E-value=2.7e-06  Score=57.59  Aligned_cols=67  Identities=24%  Similarity=0.426  Sum_probs=48.5

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--C---EEEee--C--------------------CeeEEEEc
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--G---LVLRR--N--------------------SDEVLVLD   64 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~---~~~~~--~--------------------~~~~l~i~   64 (371)
                      .|+..|.. +.+.+|++++|.|....+  ...+.|||-  |   +.+..  .                    ....|.|.
T Consensus         3 ~VtQ~P~~-~~~~~G~~v~l~C~~~~~--~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~   79 (113)
T d1nfdb1           3 GVVQSPRH-IIKEKGGRSVLTCIPISG--HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMS   79 (113)
T ss_dssp             SCEEECSE-EEEETTCCCEEEEECCTT--CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECC
T ss_pred             CEEEcCCE-EEEeCCCCEEEEEEeCCC--CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEec
Confidence            35566777 889999999999965433  356999982  1   11100  0                    45689999


Q ss_pred             cCCcCCCeEEEEEEEcC
Q psy14542         65 RVQREDAGMYQCHVSAD   81 (371)
Q Consensus        65 ~~~~~d~G~Y~C~~~~~   81 (371)
                      +++.+|+|.|.|.+...
T Consensus        80 ~~~~~Dsa~YyCa~~~~   96 (113)
T d1nfdb1          80 ALELEDSAMYFCASSLR   96 (113)
T ss_dssp             SCCGGGCEEECEEEESS
T ss_pred             ccCcCCceeEEEEeecC
Confidence            99999999999987643

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.26  E-value=4.5e-06  Score=57.00  Aligned_cols=69  Identities=19%  Similarity=0.299  Sum_probs=48.9

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCC-CCCeeEEEe---CC--EEEeeC--------------------CeeEEEEcc
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLK---DG--LVLRRN--------------------SDEVLVLDR   65 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~---~~--~~~~~~--------------------~~~~l~i~~   65 (371)
                      .+...++. +.+.+|++++|.|...... ....+.|||   ++  +.+...                    ....|.|.+
T Consensus         3 ~vv~~~~s-v~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~   81 (120)
T d1hxma1           3 ELVPEHQT-VPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILA   81 (120)
T ss_dssp             CEEESCSE-EEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESS
T ss_pred             eEeccCCC-EEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccc
Confidence            34555555 7899999999999765332 234689997   11  111111                    457999999


Q ss_pred             CCcCCCeEEEEEEEcC
Q psy14542         66 VQREDAGMYQCHVSAD   81 (371)
Q Consensus        66 ~~~~d~G~Y~C~~~~~   81 (371)
                      ++.+|+|.|.|.....
T Consensus        82 ~~~~Dsa~YyCA~~~~   97 (120)
T d1hxma1          82 PSERDEGSYYCACDTL   97 (120)
T ss_dssp             CCGGGCEEEEEEEECC
T ss_pred             ccccCCceeecCcccC
Confidence            9999999999987653

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.26  E-value=3.4e-06  Score=57.26  Aligned_cols=64  Identities=23%  Similarity=0.360  Sum_probs=45.6

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCC--ccc------------ccCCceEE------ecceEEEeccCCCCCeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQD--SPV------------EESDRIQR------IGSSLSISHVEESDSGVWNCVA  293 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~~------------~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~a  293 (371)
                      +.+|+.++|.|.........+.|+|..  ..+            ....++..      ....|.|.+++.+|+|.|.|.+
T Consensus        13 v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~   92 (115)
T d1lp9e1          13 LTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCAL   92 (115)
T ss_dssp             EETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEEEEEE
T ss_pred             ECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCccceEEE
Confidence            899999999999887666789999732  111            01122221      1235999999999999999988


Q ss_pred             EcCC
Q psy14542        294 NNSE  297 (371)
Q Consensus       294 ~n~~  297 (371)
                      ....
T Consensus        93 ~~~~   96 (115)
T d1lp9e1          93 FLAS   96 (115)
T ss_dssp             EECS
T ss_pred             EcCC
Confidence            6543

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=5.2e-06  Score=54.01  Aligned_cols=70  Identities=14%  Similarity=0.156  Sum_probs=48.2

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeEEE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGMYQ   75 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~Y~   75 (371)
                      +|.|.+...     ..|+.++|.|.+.+.+|.+.+.|++||..+...              ....|.+.   ..+...|+
T Consensus         5 ~P~V~~~~~-----~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~t   76 (95)
T d1dr9a2           5 TPSISDFEI-----PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFM   76 (95)
T ss_dssp             CCEEEEEEC-----SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEE
T ss_pred             CCEEEeccc-----CCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEE
Confidence            455655433     257889999988888898899999999877654              12334443   34567899


Q ss_pred             EEEEcCCCCeEE
Q psy14542         76 CHVSADDDSAQM   87 (371)
Q Consensus        76 C~~~~~~~~~~~   87 (371)
                      |.+.+..-....
T Consensus        77 C~V~h~~l~~~~   88 (95)
T d1dr9a2          77 CLIKYGHLRVNQ   88 (95)
T ss_dssp             EEEEETTCCEEE
T ss_pred             EEEEecCCCCcE
Confidence            999876654443

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.23  E-value=2.9e-06  Score=55.29  Aligned_cols=79  Identities=15%  Similarity=0.333  Sum_probs=46.5

Q ss_pred             CCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCcccee
Q psy14542        111 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSY  190 (371)
Q Consensus       111 g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y  190 (371)
                      |++++|.|....... ..+.|++...  .......+.+........+.|........    ....|.|.+++.+| +|.|
T Consensus         1 G~~vtl~C~~~~~~~-~~~~Wyrq~~--g~~p~~l~~~~~~~~~~~~rf~~~~~~~~----~~~sL~I~~~~~~D-sg~Y   72 (94)
T d2gj6d1           1 GAIASLNCTYSDRGS-QSFFWYRQYS--GKSPELIMSIYSNGDKEDGRFTAQLNKAS----QYVSLLIRDSQPSD-SATY   72 (94)
T ss_dssp             TSCEEEEEEECCTTC-CEEEEEEECT--TSCCEEEEEECSSEEEEETTEEEEEETTT----TEEEEEECSCCGGG-CEEE
T ss_pred             CccEEEEEEEccccC-CcEEEEEECC--CcccccceeeeeeccCCCCcEEEEecCCC----CEEeEEeeccccCc-Cccc
Confidence            789999999876655 6899998221  11112222232222222233322211111    12479999999999 9999


Q ss_pred             EEEeecc
Q psy14542        191 QCRGVNK  197 (371)
Q Consensus       191 ~C~~~~~  197 (371)
                      .|.+...
T Consensus        73 yCa~~~~   79 (94)
T d2gj6d1          73 LCAVTTD   79 (94)
T ss_dssp             EEEEESS
T ss_pred             eeeEecC
Confidence            9987643

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=3.2e-06  Score=57.69  Aligned_cols=60  Identities=20%  Similarity=0.358  Sum_probs=43.6

Q ss_pred             EEEeccCcEEEEEEecCCCCCC--eeEEEe--CCEE---Eee--C-------------------CeeEEEEccCCcCCCe
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSS--AKAWLK--DGLV---LRR--N-------------------SDEVLVLDRVQREDAG   72 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~--~~~W~~--~~~~---~~~--~-------------------~~~~l~i~~~~~~d~G   72 (371)
                      +.+.+|++++|.|+........  .+.|||  .|+.   +..  .                   ....|.|.+++.+|+|
T Consensus         9 ~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   88 (117)
T d1dqta_           9 VLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTG   88 (117)
T ss_dssp             EECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             EEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccCE
Confidence            7788999999999765443222  378998  2221   110  0                   5578999999999999


Q ss_pred             EEEEEEEc
Q psy14542         73 MYQCHVSA   80 (371)
Q Consensus        73 ~Y~C~~~~   80 (371)
                      .|.|.+..
T Consensus        89 ~YyCa~~~   96 (117)
T d1dqta_          89 LYLCKVEL   96 (117)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEec
Confidence            99998863

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.22  E-value=1.8e-06  Score=58.21  Aligned_cols=67  Identities=22%  Similarity=0.335  Sum_probs=48.3

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe---CC--EEEeeC--------------------CeeEEEEccCC
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK---DG--LVLRRN--------------------SDEVLVLDRVQ   67 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~---~~--~~~~~~--------------------~~~~l~i~~~~   67 (371)
                      |+..|.. +.+.+|++++|.|..... ....+.|||   +.  +.+...                    ....|.|.+++
T Consensus         3 VtQ~p~~-~~~~~G~~vtl~C~~~~~-~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~   80 (110)
T d1ac6a_           3 VTQTEGQ-VALSEEDFLTIHCNYSAS-GYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQ   80 (110)
T ss_dssp             EEECCSE-EEEETTEEEEECEEEECS-SCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEEC
T ss_pred             eEeCCCe-EEECCCCCEEEEEEecCC-CCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcC
Confidence            5556666 899999999999965433 334699998   21  111100                    46789999999


Q ss_pred             cCCCeEEEEEEEcC
Q psy14542         68 REDAGMYQCHVSAD   81 (371)
Q Consensus        68 ~~d~G~Y~C~~~~~   81 (371)
                      .+|+|.|.|.+...
T Consensus        81 ~~Dsa~YyCA~~~~   94 (110)
T d1ac6a_          81 ESDSAVYYCALSGG   94 (110)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             cCCCcccceeecCC
Confidence            99999999988653

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.20  E-value=2.3e-06  Score=57.05  Aligned_cols=67  Identities=19%  Similarity=0.390  Sum_probs=46.3

Q ss_pred             eeeeeeeecCCeEEEEEEeecCCCCceEEEeC--Cccc------------ccCCceEE----ecceEEEeccCCCCCeEE
Q psy14542        228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQ--DSPV------------EESDRIQR----IGSSLSISHVEESDSGVW  289 (371)
Q Consensus       228 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~----~~~~l~i~~~~~~d~G~Y  289 (371)
                      |.... +.+|++++|.|.........+.|++.  |..+            ....++..    ...+|.|.++..+|+|.|
T Consensus         8 P~sls-v~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~Y   86 (106)
T d1i8ka_           8 PASLS-VATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDY   86 (106)
T ss_dssp             CSEEE-CCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCEEE-ECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEE
Confidence            33444 89999999999877655567999963  2211            11223332    123699999999999999


Q ss_pred             EEEEEc
Q psy14542        290 NCVANN  295 (371)
Q Consensus       290 ~C~a~n  295 (371)
                      .|.+.+
T Consensus        87 yCa~~~   92 (106)
T d1i8ka_          87 YCLQSF   92 (106)
T ss_dssp             EEEECS
T ss_pred             eEecCc
Confidence            998654

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.20  E-value=3.9e-06  Score=56.08  Aligned_cols=63  Identities=24%  Similarity=0.413  Sum_probs=45.8

Q ss_pred             CCCcEEEeccCcEEEEEEecCCCCCCeeEEEe--CCE---EEeeC------------------CeeEEEEccCCcCCCeE
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK--DGL---VLRRN------------------SDEVLVLDRVQREDAGM   73 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~--~~~---~~~~~------------------~~~~l~i~~~~~~d~G~   73 (371)
                      |+. +.+.+|++++|.|..... ....+.|||  .|+   .+...                  ....|.|.+++.+|+|.
T Consensus         6 P~s-~~~~~G~svtl~C~~~~~-~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~   83 (108)
T d1nfde1           6 PSS-ASVTVGETVKITCSGDQL-PKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAA   83 (108)
T ss_dssp             CSE-EEEETTSCCCEEEEETTG-GGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSE
T ss_pred             CCe-eEECCCCCEEEEEECCCC-CCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCce
Confidence            555 789999999999965433 334589998  121   11111                  56789999999999999


Q ss_pred             EEEEEEcC
Q psy14542         74 YQCHVSAD   81 (371)
Q Consensus        74 Y~C~~~~~   81 (371)
                      |.|.+...
T Consensus        84 YyCA~~~~   91 (108)
T d1nfde1          84 YYCLSSYG   91 (108)
T ss_dssp             EEEEEEET
T ss_pred             EEEEeecC
Confidence            99998643

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.20  E-value=5.2e-06  Score=55.95  Aligned_cols=63  Identities=21%  Similarity=0.406  Sum_probs=45.4

Q ss_pred             CCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeC--CEE---EeeC--------------------CeeEEEEccCCcCC
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKD--GLV---LRRN--------------------SDEVLVLDRVQRED   70 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~--~~~---~~~~--------------------~~~~l~i~~~~~~d   70 (371)
                      |+. +.+.+|++++|.|...... ....+.|+|.  ++.   +...                    ....|.|.+++.+|
T Consensus         7 P~s-~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~D   85 (111)
T d1cd0a_           7 PHS-VSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTED   85 (111)
T ss_dssp             CSE-EEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             CCe-eEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCccc
Confidence            655 8899999999999764332 2234899972  111   1100                    56799999999999


Q ss_pred             CeEEEEEEEc
Q psy14542         71 AGMYQCHVSA   80 (371)
Q Consensus        71 ~G~Y~C~~~~   80 (371)
                      +|.|.|....
T Consensus        86 sa~YyCA~~~   95 (111)
T d1cd0a_          86 EADYYCQSYD   95 (111)
T ss_dssp             CEEEEEEEEE
T ss_pred             CcEEEEeecc
Confidence            9999998754

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.19  E-value=6.2e-06  Score=56.21  Aligned_cols=61  Identities=18%  Similarity=0.376  Sum_probs=43.2

Q ss_pred             EEEeccCcEEEEEEecCCC-CCCeeEEEe---CC--EEEee-----------C-------------CeeEEEEccCCcCC
Q psy14542         21 VVVDVGHRIELHCRVSPKR-LSSAKAWLK---DG--LVLRR-----------N-------------SDEVLVLDRVQRED   70 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~---~~--~~~~~-----------~-------------~~~~l~i~~~~~~d   70 (371)
                      +...+|++++|.|...... ....+.|||   +.  +.+..           .             ....|.|.+++.+|
T Consensus        11 v~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~~D   90 (120)
T d1ypzf1          11 ISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEED   90 (120)
T ss_dssp             EEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGG
T ss_pred             EEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccccccccc
Confidence            7788999999999654322 234588997   11  11110           0             45679999999999


Q ss_pred             CeEEEEEEEcC
Q psy14542         71 AGMYQCHVSAD   81 (371)
Q Consensus        71 ~G~Y~C~~~~~   81 (371)
                      +|.|.|.....
T Consensus        91 sa~YyCA~~~~  101 (120)
T d1ypzf1          91 EAIYYCSYGEG  101 (120)
T ss_dssp             CSEEEEEECCT
T ss_pred             ceeEEEEEcCC
Confidence            99999987643

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=3.8e-06  Score=55.14  Aligned_cols=73  Identities=21%  Similarity=0.219  Sum_probs=48.1

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCC-CeeEEEeCCEEEeeC--------CeeE---EEEccCCcCCCeEEEE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRN--------SDEV---LVLDRVQREDAGMYQC   76 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~~~--------~~~~---l~i~~~~~~d~G~Y~C   76 (371)
                      .+|.+.+.+..  .+..|+.++|.|.+...+|. ..+.|.+||..+...        .+++   .....+..+|.+.|+|
T Consensus         4 ~~P~V~v~~~~--~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC   81 (100)
T d1k5nb_           4 RTPKIQVYSRH--PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYAC   81 (100)
T ss_dssp             BCCEEEEEESS--CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEE
T ss_pred             CCCeeEEEcCC--cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEE
Confidence            45666665443  25678999999977766664 479999999887543        2221   2222344566779999


Q ss_pred             EEEcCCC
Q psy14542         77 HVSADDD   83 (371)
Q Consensus        77 ~~~~~~~   83 (371)
                      ++.....
T Consensus        82 ~V~H~sl   88 (100)
T d1k5nb_          82 RVNHVTL   88 (100)
T ss_dssp             EEECTTC
T ss_pred             EEEeCCC
Confidence            9987654

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.17  E-value=3.5e-06  Score=56.95  Aligned_cols=66  Identities=20%  Similarity=0.409  Sum_probs=47.7

Q ss_pred             EEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--C---EEEeeC----------------------CeeEEEEccC
Q psy14542         14 EMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--G---LVLRRN----------------------SDEVLVLDRV   66 (371)
Q Consensus        14 ~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~---~~~~~~----------------------~~~~l~i~~~   66 (371)
                      ...|.. ..+.+|++++|.|....+  ...+.|||-  |   +.+...                      ....|.|.++
T Consensus         2 ~QsP~~-~~~~~G~svtL~C~~~~~--~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~   78 (112)
T d2cdeb1           2 YQTPRY-LVIGTGKKITLECSQTMG--HDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESA   78 (112)
T ss_dssp             EEECSE-EEEETTCCBCCEEEETTC--CSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSC
T ss_pred             EECCCE-EEECCCCCEEEEEEEeCC--cccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccc
Confidence            445666 789999999999975433  356999981  1   111100                      4567999999


Q ss_pred             CcCCCeEEEEEEEcCC
Q psy14542         67 QREDAGMYQCHVSADD   82 (371)
Q Consensus        67 ~~~d~G~Y~C~~~~~~   82 (371)
                      +.+|+|.|.|.+....
T Consensus        79 ~~~Dsa~YyCA~~~~~   94 (112)
T d2cdeb1          79 RPSHTSQYLCASSENI   94 (112)
T ss_dssp             CTTTCSEEEEEEECSS
T ss_pred             cccccccEEEEEecCC
Confidence            9999999999887543

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=2.7e-06  Score=55.45  Aligned_cols=73  Identities=11%  Similarity=0.189  Sum_probs=50.7

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccC-Cce--EEecceEEEeccCCCCCeEEEEEEEc
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEES-DRI--QRIGSSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~--~~~~~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      .+|.+...+...  +..|++++|.|... .+...+.++++|...... ...  ......+.|.++..+|+|.|+|....
T Consensus         3 PkP~Lsa~Ps~~--V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1           3 PKPTLWAEPGSV--ITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             CCCEEEEESCSE--EETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeECCCc--cCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            356666555533  89999999999864 444578888987632211 110  12346899999999999999998754

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.3e-05  Score=52.01  Aligned_cols=68  Identities=13%  Similarity=0.334  Sum_probs=47.1

Q ss_pred             eecCCeEEEEEEeec-CCCCceEEEeCCcccccCCceEE---------ecceEEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542        234 VKKDESVILPCSAQG-NPLPTIKWYKQDSPVEESDRIQR---------IGSSLSISHVEESDSGVWNCVANNSEGQDKMQ  303 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  303 (371)
                      ...++.++|.|.+.| +|.+.+.|+++|..+........         ..+.|.+.   ..+...|+|.+.+..-.....
T Consensus        13 ~~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~~~~~   89 (95)
T d1dr9a2          13 IPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRVNQT   89 (95)
T ss_dssp             CSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCCEEEE
T ss_pred             cCCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCCCcEE
Confidence            345778899999987 78899999999987754432221         11245554   345779999999887665544


Q ss_pred             E
Q psy14542        304 L  304 (371)
Q Consensus       304 ~  304 (371)
                      +
T Consensus        90 ~   90 (95)
T d1dr9a2          90 F   90 (95)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.15  E-value=9e-06  Score=53.23  Aligned_cols=77  Identities=13%  Similarity=0.131  Sum_probs=51.7

Q ss_pred             ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccce
Q psy14542         96 ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE  175 (371)
Q Consensus        96 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~  175 (371)
                      ..|.+...+...+..|++|+|.|......  ..+.|+|+|.........                      .........
T Consensus         5 pkPsLsa~P~~~V~~G~~VTL~C~~~~~~--~~f~L~k~g~~~~~~~~~----------------------~~~~~~~~~   60 (99)
T d1nkra2           5 EKPSLSAQPGPTVLAGENVTLSCSSRSSY--DMYHLSREGEAHERRLPA----------------------GPKVNGTFQ   60 (99)
T ss_dssp             CCCEEEEESCSEECTTCEEEEEEEESSCC--SEEEEEETTCSSCEEEEC----------------------EEEETTEEE
T ss_pred             CCCEEEEeCCCcccCCCeEEEEECCCCCc--cEEEEEECCCccccEEEc----------------------cccCCccEE
Confidence            45677777777789999999999876543  589999988533211100                      000001135


Q ss_pred             EEEEEeecCCccceeEEEeecc
Q psy14542        176 LIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      +.|..+...| +|.|+|.....
T Consensus        61 f~~~~~~~~~-~G~Y~C~y~~~   81 (99)
T d1nkra2          61 ADFPLGPATH-GGTYRCFGSFH   81 (99)
T ss_dssp             EEEEEEECCS-CEEEEEEEEET
T ss_pred             EEEecccccc-CEEEEEEeecC
Confidence            6788888889 99999976544

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.15  E-value=6.4e-06  Score=53.55  Aligned_cols=55  Identities=27%  Similarity=0.478  Sum_probs=39.9

Q ss_pred             cCcEEEEEEecCCCCCCeeEEEeC--C---EEEe---------eC----------CeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542         26 GHRIELHCRVSPKRLSSAKAWLKD--G---LVLR---------RN----------SDEVLVLDRVQREDAGMYQCHVSAD   81 (371)
Q Consensus        26 G~~v~l~C~~~~~~~~~~~~W~~~--~---~~~~---------~~----------~~~~l~i~~~~~~d~G~Y~C~~~~~   81 (371)
                      |++++|.|.... .....+.|||.  +   +.+.         ..          ...+|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~-~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSD-RGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECC-TTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEcc-ccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            789999996543 34557899971  1   1111         00          4578999999999999999998754

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.15  E-value=3.3e-06  Score=56.24  Aligned_cols=67  Identities=22%  Similarity=0.374  Sum_probs=46.1

Q ss_pred             eeeeeeeecCCeEEEEEEeecCCCCceEEEeC--Cccc------------ccCCceEE----ecceEEEeccCCCCCeEE
Q psy14542        228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQ--DSPV------------EESDRIQR----IGSSLSISHVEESDSGVW  289 (371)
Q Consensus       228 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~----~~~~l~i~~~~~~d~G~Y  289 (371)
                      |.... +.+|++++|.|.........+.|++.  |..+            ....++..    .+..|.|.+++.+|+|.|
T Consensus         8 P~s~~-~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   86 (107)
T d1c5cl1           8 PSSLS-ASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADY   86 (107)
T ss_dssp             CSEEE-ECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             CCEEE-ECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEE
Confidence            33344 88999999999987666667999973  2211            01122221    123799999999999999


Q ss_pred             EEEEEc
Q psy14542        290 NCVANN  295 (371)
Q Consensus       290 ~C~a~n  295 (371)
                      .|.+.+
T Consensus        87 yCa~~~   92 (107)
T d1c5cl1          87 YCLQYA   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEecCc
Confidence            998754

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.14  E-value=2.5e-06  Score=57.79  Aligned_cols=70  Identities=23%  Similarity=0.471  Sum_probs=47.5

Q ss_pred             eeeeeeeecCCeEEEEEEeecCCCCceEEEeC--Ccccc------------cCCceE--E----ecceEEEeccCCCCCe
Q psy14542        228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQ--DSPVE------------ESDRIQ--R----IGSSLSISHVEESDSG  287 (371)
Q Consensus       228 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~~------------~~~~~~--~----~~~~l~i~~~~~~d~G  287 (371)
                      +.... +.+|+.++|.|...+.....+.|+|.  |+.+.            ...++.  .    ....|.|.++..+|+|
T Consensus         7 P~~v~-v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg   85 (113)
T d2bnqd1           7 PAALS-VPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSA   85 (113)
T ss_dssp             SSEEE-EETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCE
T ss_pred             CCEEE-EcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCc
Confidence            33444 89999999999987665567999973  22110            111121  1    1137999999999999


Q ss_pred             EEEEEEEcCCC
Q psy14542        288 VWNCVANNSEG  298 (371)
Q Consensus       288 ~Y~C~a~n~~g  298 (371)
                      .|.|.+....+
T Consensus        86 ~YyCa~~~~~~   96 (113)
T d2bnqd1          86 TYLCAVRPTSG   96 (113)
T ss_dssp             EEEEEEEESSS
T ss_pred             EEeEeEecCCC
Confidence            99999875543

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.13  E-value=4.1e-06  Score=56.05  Aligned_cols=66  Identities=26%  Similarity=0.418  Sum_probs=45.7

Q ss_pred             eeeeeeecCCeEEEEEEeecCCCCceEEEeCC--ccc------------ccCCceEE----ecceEEEeccCCCCCeEEE
Q psy14542        229 HRILNVKKDESVILPCSAQGNPLPTIKWYKQD--SPV------------EESDRIQR----IGSSLSISHVEESDSGVWN  290 (371)
Q Consensus       229 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~~------------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~  290 (371)
                      .... +.+|++++|.|.........+.|++..  ..+            ....++..    ....|.|.++..+|+|.|.
T Consensus         9 ~~l~-v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~Yy   87 (107)
T d1kcvl1           9 KSMG-MSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADYY   87 (107)
T ss_dssp             SEEE-EETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CEEe-ECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceEE
Confidence            3344 899999999999876655679999732  211            01122221    1236999999999999999


Q ss_pred             EEEEc
Q psy14542        291 CVANN  295 (371)
Q Consensus       291 C~a~n  295 (371)
                      |.+..
T Consensus        88 Ca~~~   92 (107)
T d1kcvl1          88 CGQSY   92 (107)
T ss_dssp             EEECS
T ss_pred             EEecC
Confidence            98754

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.13  E-value=7.1e-06  Score=54.68  Aligned_cols=62  Identities=21%  Similarity=0.398  Sum_probs=44.4

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCC--ccc------------ccCCceEE----ecceEEEeccCCCCCeEEEEEEEc
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQD--SPV------------EESDRIQR----IGSSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~~------------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      +.+|++++|.|...+.....+.|++..  ..+            ....++..    ....|.|.++..+|+|.|.|.+..
T Consensus        13 v~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1ospl1          13 VSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATYFCQQYW   92 (107)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEEEEEECS
T ss_pred             ECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcEEEeecc
Confidence            899999999999876555579999732  111            11123332    224799999999999999998754

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=7.9e-06  Score=49.48  Aligned_cols=71  Identities=18%  Similarity=0.339  Sum_probs=51.1

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe-CCE---EEeeC-------------CeeEEEEccCCcCCCeEEE
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGL---VLRRN-------------SDEVLVLDRVQREDAGMYQ   75 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~-~~~---~~~~~-------------~~~~l~i~~~~~~d~G~Y~   75 (371)
                      +.+.-.+...+..|+.+.|.|.+.--.-.+.++|-| +|.   .+...             .-..|.+.++-.+|.|.|+
T Consensus         5 LyiKR~S~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYr   84 (104)
T d1xaua_           5 LNIKRNSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYS   84 (104)
T ss_dssp             ECCCTTEEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEE
T ss_pred             EEEEecceeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceE
Confidence            334444447899999999999776545567899987 332   11111             5578999999999999999


Q ss_pred             EEEEcCCC
Q psy14542         76 CHVSADDD   83 (371)
Q Consensus        76 C~~~~~~~   83 (371)
                      |.+.-..+
T Consensus        85 CSanf~s~   92 (104)
T d1xaua_          85 CSTNFNSQ   92 (104)
T ss_dssp             EEEEETTE
T ss_pred             EecCCChh
Confidence            99975443

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=9.3e-06  Score=54.17  Aligned_cols=63  Identities=21%  Similarity=0.401  Sum_probs=45.0

Q ss_pred             EEEeccCcEEEEEEecC-CCCCCeeEEEeC--CE----EEeeC----------------------CeeEEEEccCCcCCC
Q psy14542         21 VVVDVGHRIELHCRVSP-KRLSSAKAWLKD--GL----VLRRN----------------------SDEVLVLDRVQREDA   71 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~-~~~~~~~~W~~~--~~----~~~~~----------------------~~~~l~i~~~~~~d~   71 (371)
                      ..+.+|++++|.|.... ......+.|+|.  ++    .+...                      ....|.|.+++.+|+
T Consensus         5 ~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eDs   84 (110)
T d1u9ka_           5 YDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTDS   84 (110)
T ss_dssp             EEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             CcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCCC
Confidence            67899999999996543 234456889872  21    11100                      556799999999999


Q ss_pred             eEEEEEEEcCCC
Q psy14542         72 GMYQCHVSADDD   83 (371)
Q Consensus        72 G~Y~C~~~~~~~   83 (371)
                      |.|.|.......
T Consensus        85 a~YyCa~~~~~~   96 (110)
T d1u9ka_          85 GLYRCVIYHPPN   96 (110)
T ss_dssp             EEEEEEEECTTS
T ss_pred             EEEEEEEeCCCC
Confidence            999999875443

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.12  E-value=4.2e-06  Score=55.93  Aligned_cols=66  Identities=30%  Similarity=0.466  Sum_probs=45.7

Q ss_pred             eeeeeeecCCeEEEEEEeecCCCCceEEEeCCc--cc------------ccCCceEE----ecceEEEeccCCCCCeEEE
Q psy14542        229 HRILNVKKDESVILPCSAQGNPLPTIKWYKQDS--PV------------EESDRIQR----IGSSLSISHVEESDSGVWN  290 (371)
Q Consensus       229 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~--~~------------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~  290 (371)
                      .... +.+|++++|.|.........+.|++...  .+            ....++..    ....|.|.++..+|+|.|.
T Consensus         9 ~~l~-v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (107)
T d1j1pl_           9 ATLS-VTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF   87 (107)
T ss_dssp             SEEE-ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CeEE-ECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEEE
Confidence            3344 8999999999997655556799997321  11            11123331    1237999999999999999


Q ss_pred             EEEEc
Q psy14542        291 CVANN  295 (371)
Q Consensus       291 C~a~n  295 (371)
                      |.+.+
T Consensus        88 Ca~~~   92 (107)
T d1j1pl_          88 CQQAN   92 (107)
T ss_dssp             EEECS
T ss_pred             EEcCC
Confidence            97654

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=3.3e-05  Score=46.18  Aligned_cols=55  Identities=27%  Similarity=0.607  Sum_probs=41.8

Q ss_pred             EeccCcEEEEEEecCCCCC-CeeEEEeCCEEEeeC----CeeEEEEccCCcCCCeEEEEEEE
Q psy14542         23 VDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRN----SDEVLVLDRVQREDAGMYQCHVS   79 (371)
Q Consensus        23 ~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~   79 (371)
                      ...|..+.|.|........ .--.|.|+|+.+...    ....+.|..  .+++|.|.|..-
T Consensus         9 ~~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~~~tey~V~~--~D~SGeY~CVFl   68 (80)
T d3b5ha2           9 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDS--DDQWGEYSCVFL   68 (80)
T ss_dssp             EEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCSEEEEEECG--GGCCEEEEEEEE
T ss_pred             ccCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCCCceEEEEec--CCCCceEEEEEc
Confidence            4578899999977654433 347999999999876    445567764  778999999964

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=9.4e-06  Score=55.34  Aligned_cols=63  Identities=17%  Similarity=0.316  Sum_probs=45.2

Q ss_pred             CCCcEEEeccCcEEEEEEecCCCCCC--eeEEEeC--CE---EEeeC---------------------CeeEEEEccCCc
Q psy14542         17 PSGQVVVDVGHRIELHCRVSPKRLSS--AKAWLKD--GL---VLRRN---------------------SDEVLVLDRVQR   68 (371)
Q Consensus        17 p~~~~~~~~G~~v~l~C~~~~~~~~~--~~~W~~~--~~---~~~~~---------------------~~~~l~i~~~~~   68 (371)
                      |.. +.+.+|+.++|.|.........  .+.|||.  ++   .+...                     ....|.|.+++.
T Consensus         6 P~~-~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~   84 (118)
T d1i8lc_           6 PAV-VLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRA   84 (118)
T ss_dssp             CSE-EECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCG
T ss_pred             CCE-EEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeecccc
Confidence            443 7788999999999765443322  4889982  21   11110                     567899999999


Q ss_pred             CCCeEEEEEEEc
Q psy14542         69 EDAGMYQCHVSA   80 (371)
Q Consensus        69 ~d~G~Y~C~~~~   80 (371)
                      +|+|.|.|.+..
T Consensus        85 ~Dsa~YyCa~~~   96 (118)
T d1i8lc_          85 MDTGLYICKVEL   96 (118)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCCEEEEEeEec
Confidence            999999998864

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.11  E-value=3.6e-06  Score=55.15  Aligned_cols=72  Identities=19%  Similarity=0.231  Sum_probs=48.2

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC---------CeeE---EEEccCCcCCCeEEEE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN---------SDEV---LVLDRVQREDAGMYQC   76 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~---------~~~~---l~i~~~~~~d~G~Y~C   76 (371)
                      +|.+.+.|..  .+..|+.++|.|.+...+| ...+.|++||..+..+         .+++   .....+..++.+.|+|
T Consensus         3 pP~V~v~p~~--~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC   80 (100)
T d1muja1           3 APQATVFPKS--PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDC   80 (100)
T ss_dssp             CCEEEEEESS--CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEE
T ss_pred             CCEEEEEcCC--ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEE
Confidence            5777777665  3567899999997776655 5679999998776543         1111   1112234456678999


Q ss_pred             EEEcCCC
Q psy14542         77 HVSADDD   83 (371)
Q Consensus        77 ~~~~~~~   83 (371)
                      ++....-
T Consensus        81 ~V~H~sl   87 (100)
T d1muja1          81 KVEHWGL   87 (100)
T ss_dssp             EEECTTS
T ss_pred             EEEECCC
Confidence            9997643

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=5.7e-06  Score=54.32  Aligned_cols=73  Identities=19%  Similarity=0.269  Sum_probs=47.3

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCC-CeeEEEeCCEEEeeC--------Cee---EEEEccCCcCCCeEEEE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRN--------SDE---VLVLDRVQREDAGMYQC   76 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~~~--------~~~---~l~i~~~~~~d~G~Y~C   76 (371)
                      .+|.+.+.+..  ....|+.++|.|.+...+|. ..++|++||..+...        .++   ......+..++.+.|+|
T Consensus         3 ~~P~V~v~~~~--~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC   80 (99)
T d1lk2b_           3 KTPQIQVYSRH--PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC   80 (99)
T ss_dssp             BCCEEEEEESS--CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEE
T ss_pred             CCCEEEEEcCC--CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEE
Confidence            35666665554  24578899999977766664 479999999876543        111   11122234556678999


Q ss_pred             EEEcCCC
Q psy14542         77 HVSADDD   83 (371)
Q Consensus        77 ~~~~~~~   83 (371)
                      .+....-
T Consensus        81 ~V~H~sl   87 (99)
T d1lk2b_          81 RVKHDSM   87 (99)
T ss_dssp             EEECTTS
T ss_pred             EEEeCCC
Confidence            9987543

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.10  E-value=5.8e-06  Score=55.05  Aligned_cols=67  Identities=16%  Similarity=0.333  Sum_probs=46.2

Q ss_pred             eeeeeeeecCCeEEEEEEeecCCCCceEEEeCC--ccc------------ccCCceEE----ecceEEEeccCCCCCeEE
Q psy14542        228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQD--SPV------------EESDRIQR----IGSSLSISHVEESDSGVW  289 (371)
Q Consensus       228 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~~------------~~~~~~~~----~~~~l~i~~~~~~d~G~Y  289 (371)
                      |.... +.+|++++|.|...+.....+.|++..  +.+            ....++..    ....|.|.+++.+|+|.|
T Consensus         7 P~sl~-~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Y   85 (106)
T d1op3k1           7 PSTLS-ASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATY   85 (106)
T ss_dssp             CSEEE-ECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSEE
T ss_pred             CCeEE-ECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCcE
Confidence            44455 899999999999876555679999732  111            01123321    123699999999999999


Q ss_pred             EEEEEc
Q psy14542        290 NCVANN  295 (371)
Q Consensus       290 ~C~a~n  295 (371)
                      .|.+..
T Consensus        86 yCa~~~   91 (106)
T d1op3k1          86 HCQHYA   91 (106)
T ss_dssp             EEEEEC
T ss_pred             eeeeCC
Confidence            998764

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=6.7e-06  Score=54.86  Aligned_cols=66  Identities=24%  Similarity=0.320  Sum_probs=45.5

Q ss_pred             eecCCeEEEEEEeecCCC----CceEEEeCCccccc------------CCceEEe---cceEEEeccCCCCCeEEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPL----PTIKWYKQDSPVEE------------SDRIQRI---GSSLSISHVEESDSGVWNCVAN  294 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~----~~v~W~~~~~~~~~------------~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~  294 (371)
                      +..|+.++|.|.......    ..+.|.+++..+..            ..+....   +.+|.|.+++.+|+|.|.|.+.
T Consensus         6 ~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~V~   85 (105)
T d1dr9a1           6 KEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVL   85 (105)
T ss_dssp             EETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEEEE
T ss_pred             EEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEEEE
Confidence            788999999998653221    34788877653210            1222221   3479999999999999999998


Q ss_pred             cCCCC
Q psy14542        295 NSEGQ  299 (371)
Q Consensus       295 n~~g~  299 (371)
                      +..+.
T Consensus        86 ~~~~~   90 (105)
T d1dr9a1          86 KYEKD   90 (105)
T ss_dssp             ECCTT
T ss_pred             eCCCC
Confidence            65444

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=4.6e-06  Score=54.73  Aligned_cols=69  Identities=17%  Similarity=0.184  Sum_probs=45.3

Q ss_pred             ecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCcc
Q psy14542        109 DVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRY  187 (371)
Q Consensus       109 ~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~  187 (371)
                      ..|+.++|.|.+.++ |....++|.++|..+.....     .......+|.|.         ..  +.|.   +..++ .
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~-----~~~~~~~dgty~---------~~--s~l~---v~~~~-~   76 (100)
T d1k5nb_          17 ENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEH-----SDLSFSKDWSFY---------LL--YYTE---FTPTE-K   76 (100)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEE-----CCCEECTTSCEE---------EE--EEEE---ECCCS-S
T ss_pred             cCCCCEEEEEEECccCCCCcEEEEEECCEecCCccc-----cceecCCCCcEE---------EE--EEeE---ECCCC-C
Confidence            568899999999987 44579999999998754321     122223344332         11  2333   34566 7


Q ss_pred             ceeEEEeecc
Q psy14542        188 RSYQCRGVNK  197 (371)
Q Consensus       188 g~y~C~~~~~  197 (371)
                      +.|+|.+.+.
T Consensus        77 ~~ytC~V~H~   86 (100)
T d1k5nb_          77 DEYACRVNHV   86 (100)
T ss_dssp             CCEEEEEECT
T ss_pred             CEEEEEEEeC
Confidence            8999999986

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.09  E-value=6.1e-06  Score=55.02  Aligned_cols=63  Identities=21%  Similarity=0.433  Sum_probs=43.4

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCc--cc------------ccCCceE--Ee--cceEEEeccCCCCCeEEEEEEEc
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDS--PV------------EESDRIQ--RI--GSSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~--~~------------~~~~~~~--~~--~~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      +.+|++++|.|.........+.|++...  .+            ....++.  ..  ...|.|.++..+|+|.|.|.+.+
T Consensus        13 ~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~~   92 (108)
T d1jhll_          13 ASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYICQQHN   92 (108)
T ss_dssp             ECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEEEEECS
T ss_pred             ecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEEEEeeCC
Confidence            8999999999998765556799997321  10            0011111  11  13699999999999999997654


Q ss_pred             C
Q psy14542        296 S  296 (371)
Q Consensus       296 ~  296 (371)
                      .
T Consensus        93 ~   93 (108)
T d1jhll_          93 E   93 (108)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.08  E-value=1e-05  Score=52.47  Aligned_cols=72  Identities=18%  Similarity=0.279  Sum_probs=49.2

Q ss_pred             cceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCce---E--EecceEEEeccCCCCCeEEEEEEEcC
Q psy14542        222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI---Q--RIGSSLSISHVEESDSGVWNCVANNS  296 (371)
Q Consensus       222 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~---~--~~~~~l~i~~~~~~d~G~Y~C~a~n~  296 (371)
                      |.+...+...  +..|++++|.|... .....+.++|+|.........   .  .....+.|.++...|+|+|.|.....
T Consensus         3 PsLsa~P~~~--V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1           3 PSLLAHPGPL--VKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             CEEEEESCSE--EETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CEEEeeCCCc--cCCCCcEEEEECCC-CCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            4444444332  89999999999865 344578999987643211111   1  22356999999999999999987644

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.08  E-value=1.3e-05  Score=53.77  Aligned_cols=87  Identities=16%  Similarity=0.191  Sum_probs=48.6

Q ss_pred             CCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEee
Q psy14542        103 SNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVD  182 (371)
Q Consensus       103 ~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~  182 (371)
                      ++...+.+|++++|.|..........+.||+...  .....+.+........ ...+........    ....|.|.+++
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~--g~~~~~i~~~~~~~~~-~~~~~~~~~~~~----~~~~L~I~~~~   77 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIH--SQGPQYIIHGLKNNET-NEMASLIITEDR----KSSTLILPHAT   77 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECT--TSCCEEEEEESSSCEE-CSSCEEEECTTC----SEEEEEESSCC
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECC--CCccEEeeeeeceecc-cccceeeecccC----Ceeeehhcccc
Confidence            3455568999999999986544325689998321  0111222222111111 111111111111    22579999999


Q ss_pred             cCCccceeEEEeecc
Q psy14542        183 ESDRYRSYQCRGVNK  197 (371)
Q Consensus       183 ~~d~~g~y~C~~~~~  197 (371)
                      .+| +|.|.|.+...
T Consensus        78 ~~D-sa~YyCa~~~~   91 (110)
T d2esvd1          78 LRD-TAVYYCIVVRS   91 (110)
T ss_dssp             GGG-CEEEEEEEEES
T ss_pred             cCC-ceEEEEEEeCC
Confidence            999 99999987543

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.08  E-value=4.9e-06  Score=55.48  Aligned_cols=61  Identities=23%  Similarity=0.480  Sum_probs=43.4

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCC--ccc------------ccCCceEEe----cceEEEeccCCCCCeEEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQD--SPV------------EESDRIQRI----GSSLSISHVEESDSGVWNCVAN  294 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~~------------~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~  294 (371)
                      +.+|++++|.|...+.....+.|++..  ..+            ....++...    ...|.|.+++.+|+|.|.|.+.
T Consensus        12 ~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   90 (106)
T d1lk3l1          12 VSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQQS   90 (106)
T ss_dssp             ECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             ECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCcccccc
Confidence            899999999999876555679999732  111            011233311    2379999999999999999754

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.08  E-value=1.1e-05  Score=53.01  Aligned_cols=70  Identities=16%  Similarity=0.230  Sum_probs=44.4

Q ss_pred             ecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCcc
Q psy14542        109 DVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRY  187 (371)
Q Consensus       109 ~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~  187 (371)
                      ..|+..+|.|.+.++ |....++|.++|..+..+..    ........+|.|.         ..  +.|.+.   ..+ .
T Consensus        17 ~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~----~~~~~~~~dgty~---------~~--S~L~v~---~~~-~   77 (101)
T d1fnga1          17 NLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVS----ETVFLPRDDHLFR---------KF--HYLTFL---PST-D   77 (101)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEE----ECCCEECSSSCEE---------EE--EEEEEC---CCT-T
T ss_pred             cCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcE----eCeEEECCCCcEE---------EE--EEeEEc---CCC-C
Confidence            457788999999987 44579999999998764311    1112222333332         21  344443   345 6


Q ss_pred             ceeEEEeecc
Q psy14542        188 RSYQCRGVNK  197 (371)
Q Consensus       188 g~y~C~~~~~  197 (371)
                      ..|+|.+.+.
T Consensus        78 ~~ytC~V~H~   87 (101)
T d1fnga1          78 DFYDCEVDHW   87 (101)
T ss_dssp             CCEEEEEECT
T ss_pred             CEEEEEEEEC
Confidence            6899999886

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.07  E-value=1.2e-05  Score=52.69  Aligned_cols=69  Identities=16%  Similarity=0.255  Sum_probs=46.7

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC---------------CeeEEEEccCCcCCCeE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN---------------SDEVLVLDRVQREDAGM   73 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~   73 (371)
                      +|.+.+.|..  ....|+..+|.|.+...+| ...+.|++||+.+..+               ....|.+.   ..+...
T Consensus         5 ~P~V~v~~~~--~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~   79 (101)
T d1fnga1           5 APEVTVLSRS--PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFL---PSTDDF   79 (101)
T ss_dssp             CCEEEEEESS--CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEEC---CCTTCC
T ss_pred             CCeEEEeCCC--cccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEc---CCCCCE
Confidence            5566665554  2456888999997777666 4579999999987654               12234443   345567


Q ss_pred             EEEEEEcCCC
Q psy14542         74 YQCHVSADDD   83 (371)
Q Consensus        74 Y~C~~~~~~~   83 (371)
                      |+|++....-
T Consensus        80 ytC~V~H~sl   89 (101)
T d1fnga1          80 YDCEVDHWGL   89 (101)
T ss_dssp             EEEEEECTTC
T ss_pred             EEEEEEECCC
Confidence            9999987643

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.07  E-value=1.4e-05  Score=54.23  Aligned_cols=89  Identities=18%  Similarity=0.282  Sum_probs=46.3

Q ss_pred             ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe-----ccceEEEE
Q psy14542        105 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML-----SSGELIIH  179 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~-----~~~~l~i~  179 (371)
                      ...+.+|++++|.|.+.+......+.|++.....  ..+....+..........|.-.....++...     ....|.|.
T Consensus         7 ~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~--~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   84 (115)
T d2atpb1           7 SLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDP--KDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIM   84 (115)
T ss_dssp             EEEECTTSCEEEEEECCSSCCSSEEEEEEEEECS--SCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEEC
T ss_pred             cEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCC--CCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeec
Confidence            3445899999999998764433679999742110  0111101100000000000000001111111     12479999


Q ss_pred             EeecCCccceeEEEeec
Q psy14542        180 QVDESDRYRSYQCRGVN  196 (371)
Q Consensus       180 ~~~~~d~~g~y~C~~~~  196 (371)
                      +++.+| +|.|.|.+..
T Consensus        85 ~~~~~D-sg~Y~Ca~~~  100 (115)
T d2atpb1          85 NVKPED-SDFYFCATVG  100 (115)
T ss_dssp             SCCGGG-CEEEEEEEEC
T ss_pred             ccCCCC-CcEEEEeEcC
Confidence            999999 9999998754

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.07  E-value=6.9e-06  Score=53.69  Aligned_cols=70  Identities=17%  Similarity=0.255  Sum_probs=41.6

Q ss_pred             ecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCcc
Q psy14542        109 DVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRY  187 (371)
Q Consensus       109 ~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~  187 (371)
                      ..++..+|.|.+.++ |....++|.++|..+....    .........+|.|.              ....-.+...+ .
T Consensus        16 ~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~----~~~~~~~~~dgtf~--------------~~s~l~~~~~~-~   76 (98)
T d1d5mb1          16 PLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGV----VSTGLIQNGDWTFQ--------------TLVMLETVPRS-G   76 (98)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEECCSSE----EECCCEECSSSCEE--------------EEEEEECCCCT-T
T ss_pred             ccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCC----EECeEEeCCCcEEE--------------EEEEeeEcCCC-C
Confidence            346667899999886 4457999999998775541    11222233344442              12222345666 7


Q ss_pred             ceeEEEeecc
Q psy14542        188 RSYQCRGVNK  197 (371)
Q Consensus       188 g~y~C~~~~~  197 (371)
                      ..|+|.+.+.
T Consensus        77 ~~ytC~V~H~   86 (98)
T d1d5mb1          77 EVYTCQVEHP   86 (98)
T ss_dssp             CEEEEEEECT
T ss_pred             CEEEEEEEEC
Confidence            8999999987

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.07  E-value=1.8e-05  Score=53.56  Aligned_cols=63  Identities=21%  Similarity=0.392  Sum_probs=44.3

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeC--Ccccc-------------cCCceEE----e--cceEEEeccCCCCCeEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQ--DSPVE-------------ESDRIQR----I--GSSLSISHVEESDSGVWNCV  292 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~~-------------~~~~~~~----~--~~~l~i~~~~~~d~G~Y~C~  292 (371)
                      +.+|+.++|.|.........+.|++-  |+.+.             ...++..    .  ...|.|.++..+|+|.|.|.
T Consensus        12 ~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa   91 (115)
T d1j8hd1          12 VSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAAEYFCA   91 (115)
T ss_dssp             EETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCEEEEEE
T ss_pred             EcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCccceee
Confidence            89999999999987655567999973  22110             0011111    1  12699999999999999999


Q ss_pred             EEcC
Q psy14542        293 ANNS  296 (371)
Q Consensus       293 a~n~  296 (371)
                      +...
T Consensus        92 ~~~~   95 (115)
T d1j8hd1          92 VSES   95 (115)
T ss_dssp             EESS
T ss_pred             ecCC
Confidence            8754

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=3.4e-05  Score=51.59  Aligned_cols=65  Identities=14%  Similarity=0.248  Sum_probs=42.8

Q ss_pred             eecCCeEEEEEEeecCC--CCceEEEeCC--cc------------cccCCceEEe------cceEEEeccCCCCCeEEEE
Q psy14542        234 VKKDESVILPCSAQGNP--LPTIKWYKQD--SP------------VEESDRIQRI------GSSLSISHVEESDSGVWNC  291 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~------------~~~~~~~~~~------~~~l~i~~~~~~d~G~Y~C  291 (371)
                      +.+|++++|.|......  ...+.|++..  ..            -....++...      ...|.|.+++.+|+|.|.|
T Consensus         8 ~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~Y~C   87 (108)
T d1hkfa_           8 SVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWC   87 (108)
T ss_dssp             ECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             EcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEEEEE
Confidence            88999999999865332  2357898732  11            0111222211      1269999999999999999


Q ss_pred             EEEcCCC
Q psy14542        292 VANNSEG  298 (371)
Q Consensus       292 ~a~n~~g  298 (371)
                      .+.....
T Consensus        88 ~v~~~~~   94 (108)
T d1hkfa_          88 RIYRPSD   94 (108)
T ss_dssp             EEECTTT
T ss_pred             EEecCCC
Confidence            9875443

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.06  E-value=1e-05  Score=54.32  Aligned_cols=64  Identities=20%  Similarity=0.433  Sum_probs=45.0

Q ss_pred             eecCCeEEEEEEeecC--CCCceEEEeCC--c----ccccCCceEE--e----cceEEEeccCCCCCeEEEEEEEcCC
Q psy14542        234 VKKDESVILPCSAQGN--PLPTIKWYKQD--S----PVEESDRIQR--I----GSSLSISHVEESDSGVWNCVANNSE  297 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~--p~~~v~W~~~~--~----~~~~~~~~~~--~----~~~l~i~~~~~~d~G~Y~C~a~n~~  297 (371)
                      +..|++++|.|...+.  ....+.|++..  .    .+...+++..  .    ...|.|.+++.+|+|.|.|.+....
T Consensus        11 ~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~~~   88 (112)
T d1sq2n_          11 KETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGVAG   88 (112)
T ss_dssp             ECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECBTT
T ss_pred             EcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEecCC
Confidence            8899999999987643  44679999732  1    2223334431  1    1269999999999999999876543

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=9.5e-06  Score=55.72  Aligned_cols=87  Identities=17%  Similarity=0.235  Sum_probs=48.4

Q ss_pred             CCceeeecCCcEEEEEEecCC------CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe-----
Q psy14542        103 SNQVVVDVGHRIELHCRVSPK------RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML-----  171 (371)
Q Consensus       103 ~~~~~~~~g~~v~l~C~~~~~------~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~-----  171 (371)
                      .....+.+|+.|+|.|.+...      .....+.|++.........  .+............|     .++..+.     
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~R~~~~~~~~~   80 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKA--PVATNNPAWAVQEET-----RDRFHLLGDPQT   80 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CC--CSEESCTTSCCCTTT-----TTTEEECSCGGG
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEE--EEeeCCCCceecccc-----ceEEEEeeeCcC
Confidence            345566899999999998421      1124678988654322211  111211111111111     1222222     


Q ss_pred             ccceEEEEEeecCCccceeEEEeecc
Q psy14542        172 SSGELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       172 ~~~~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      .+.+|.|.+++.+| +|.|.|.+...
T Consensus        81 ~~~sL~I~~v~~~D-sG~Y~C~v~~~  105 (121)
T d2g5ra1          81 KNCTLSIRDARMSD-AGRYFFRMEKG  105 (121)
T ss_dssp             TBCCEEECSCCGGG-CEEEEEEEEET
T ss_pred             CEEEEEECCCChHH-CEEEEEEEEeC
Confidence            23579999999999 99999999754

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.06  E-value=1.2e-05  Score=52.55  Aligned_cols=72  Identities=18%  Similarity=0.291  Sum_probs=43.8

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCC-CeeEEEeCCEEEeeC---------Cee---EEEEccCCcCCCeEEEE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRN---------SDE---VLVLDRVQREDAGMYQC   76 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~~~---------~~~---~l~i~~~~~~d~G~Y~C   76 (371)
                      +|++.+.|..  ....|+..+|.|.+...+|. ..+.|++||..+...         .++   .+....+...+.+.|+|
T Consensus         4 ~P~V~l~~~~--~~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC   81 (98)
T d1d5mb1           4 YPEVTVYPAK--TQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTC   81 (98)
T ss_dssp             CCEEEEEEC----------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEE
T ss_pred             CCEEEEECCC--ccccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEE
Confidence            4666776655  23456777899977766654 579999999887544         111   22233456667779999


Q ss_pred             EEEcCCC
Q psy14542         77 HVSADDD   83 (371)
Q Consensus        77 ~~~~~~~   83 (371)
                      ++.+..-
T Consensus        82 ~V~H~sl   88 (98)
T d1d5mb1          82 QVEHPSV   88 (98)
T ss_dssp             EEECTTC
T ss_pred             EEEECCC
Confidence            9987654

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=2e-06  Score=57.29  Aligned_cols=74  Identities=14%  Similarity=0.176  Sum_probs=48.7

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC----------------CeeEEEEccCCcCCCe
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN----------------SDEVLVLDRVQREDAG   72 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~----------------~~~~l~i~~~~~~d~G   72 (371)
                      +|++.+.|.. .....++.++|.|.+...+| ...+.|++||..+...                ..+.|.|..-......
T Consensus         4 ~P~V~v~~p~-~~~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~   82 (105)
T d1fp5a2           4 APEVYAFATP-EWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKD   82 (105)
T ss_dssp             CCEEEEEECC-CCSSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGG
T ss_pred             CCEEEEECCC-hHHhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCC
Confidence            4566665554 33456788999997766555 4689999999876543                1234555544434455


Q ss_pred             EEEEEEEcCCCC
Q psy14542         73 MYQCHVSADDDS   84 (371)
Q Consensus        73 ~Y~C~~~~~~~~   84 (371)
                      .|+|.+.+....
T Consensus        83 ~ytC~V~H~~l~   94 (105)
T d1fp5a2          83 EFICRAVHEAAS   94 (105)
T ss_dssp             GEEEEEECTTST
T ss_pred             EEEEEEEECCCC
Confidence            899999876543

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.06  E-value=1.2e-05  Score=52.42  Aligned_cols=74  Identities=15%  Similarity=0.194  Sum_probs=48.9

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC---------CeeEEE---EccCCcCCCeEEE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN---------SDEVLV---LDRVQREDAGMYQ   75 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~---------~~~~l~---i~~~~~~d~G~Y~   75 (371)
                      .+|++.+.+..  ....++.++|.|.+...+| ...+.|++||..+..+         .++++.   ...+..++...|+
T Consensus         2 ~PP~V~v~~~~--~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~yt   79 (98)
T d1hdmb1           2 RPPSVQVAKTT--PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYT   79 (98)
T ss_dssp             BCCEEEEEECC--CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEE
T ss_pred             CCCEEEEEcCC--CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEE
Confidence            35777776654  3567789999997766655 5679999999887544         111111   1223455566899


Q ss_pred             EEEEcCCCC
Q psy14542         76 CHVSADDDS   84 (371)
Q Consensus        76 C~~~~~~~~   84 (371)
                      |.+.+....
T Consensus        80 C~V~H~sl~   88 (98)
T d1hdmb1          80 CVVEHIGAP   88 (98)
T ss_dssp             EEEECTTSS
T ss_pred             EEEEeCCCC
Confidence            999886543

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.05  E-value=6.6e-06  Score=54.87  Aligned_cols=67  Identities=18%  Similarity=0.397  Sum_probs=45.9

Q ss_pred             eeeeeeeecCCeEEEEEEeecCCCCceEEEeCCc--cc------------ccCCceEE--e--cceEEEeccCCCCCeEE
Q psy14542        228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDS--PV------------EESDRIQR--I--GSSLSISHVEESDSGVW  289 (371)
Q Consensus       228 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~--~~------------~~~~~~~~--~--~~~l~i~~~~~~d~G~Y  289 (371)
                      |.... +.+|++++|.|.........+.|++...  .+            ....++..  .  ...|.|.++..+|+|.|
T Consensus         8 P~sl~-~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~Y   86 (107)
T d1tjgl1           8 PSSLS-ASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATY   86 (107)
T ss_dssp             CSEEE-ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             CCEEE-ECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceE
Confidence            44444 8899999999998755556899997322  11            01122221  1  23699999999999999


Q ss_pred             EEEEEc
Q psy14542        290 NCVANN  295 (371)
Q Consensus       290 ~C~a~n  295 (371)
                      .|.+..
T Consensus        87 yCa~~~   92 (107)
T d1tjgl1          87 YCQQLH   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEEECc
Confidence            997653

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.05  E-value=1.3e-05  Score=52.46  Aligned_cols=71  Identities=17%  Similarity=0.225  Sum_probs=44.7

Q ss_pred             eecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCc
Q psy14542        108 VDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDR  186 (371)
Q Consensus       108 ~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~  186 (371)
                      ...|+..+|.|.+.++ |....++|.++|..+..+.    .........+|.|.         ..  +.|.+   ...+ 
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~----~~~~~~~~~dgtf~---------~~--s~l~v---~~~~-   76 (99)
T d1uvqa1          16 VTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGV----SETSFLSKSDHSFF---------KI--SYLTF---LPSA-   76 (99)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTE----EECCCEECTTSCEE---------EE--EEEEE---CCCT-
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCc----EecceEECCCCCEE---------EE--EEEEE---cCCC-
Confidence            3467888999999887 4458999999999876431    11122222333332         11  33444   3455 


Q ss_pred             cceeEEEeecc
Q psy14542        187 YRSYQCRGVNK  197 (371)
Q Consensus       187 ~g~y~C~~~~~  197 (371)
                      ...|+|.+.+.
T Consensus        77 ~~~ytC~V~H~   87 (99)
T d1uvqa1          77 DEIYDCKVEHW   87 (99)
T ss_dssp             TCCEEEEEECT
T ss_pred             CCEEEEEEEeC
Confidence            66899999876

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.04  E-value=5e-06  Score=55.48  Aligned_cols=61  Identities=23%  Similarity=0.453  Sum_probs=42.9

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCC--ccc------------ccCCceE--E--ecceEEEeccCCCCCeEEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQD--SPV------------EESDRIQ--R--IGSSLSISHVEESDSGVWNCVAN  294 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~~------------~~~~~~~--~--~~~~l~i~~~~~~d~G~Y~C~a~  294 (371)
                      +.+|++++|.|.........+.|++..  +.+            ....++.  .  ....|.|.+++.+|+|.|.|.+.
T Consensus        13 ~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d3cx5k1          13 ASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATYFCQHH   91 (107)
T ss_dssp             BCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEEEEEEC
T ss_pred             ECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcEEeeeC
Confidence            899999999999776655679999732  111            0111221  1  12379999999999999999764

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.04  E-value=2.9e-07  Score=60.32  Aligned_cols=61  Identities=18%  Similarity=0.433  Sum_probs=43.9

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEEEeC--CEEE------eeC-----------------CeeEEEEccCCcCCCeEEE
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAWLKD--GLVL------RRN-----------------SDEVLVLDRVQREDAGMYQ   75 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~~~~------~~~-----------------~~~~l~i~~~~~~d~G~Y~   75 (371)
                      +.|.+|++++|.|....  ....+.|||-  ++.+      ...                 ...+|.|.+++.+|+|.|.
T Consensus         3 lsV~eG~~vtL~C~~~~--~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   80 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT--SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYF   80 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS--CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCE
T ss_pred             ceECCCCCEEEEEEEeC--CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEe
Confidence            56889999999996543  2356999972  1111      000                 4467999999999999999


Q ss_pred             EEEEcCCC
Q psy14542         76 CHVSADDD   83 (371)
Q Consensus        76 C~~~~~~~   83 (371)
                      |.+....+
T Consensus        81 CA~~~~~g   88 (96)
T d1ymmd1          81 CATDTTSG   88 (96)
T ss_dssp             EEEEETTS
T ss_pred             EeEecCCC
Confidence            99876544

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.04  E-value=8.4e-06  Score=54.34  Aligned_cols=66  Identities=23%  Similarity=0.450  Sum_probs=45.5

Q ss_pred             eeeeeeecCCeEEEEEEeecCCCCceEEEeCC--ccc------------ccCCceEE----ecceEEEeccCCCCCeEEE
Q psy14542        229 HRILNVKKDESVILPCSAQGNPLPTIKWYKQD--SPV------------EESDRIQR----IGSSLSISHVEESDSGVWN  290 (371)
Q Consensus       229 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~~------------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~  290 (371)
                      .... +.+|++++|.|.........+.|++..  ..+            ....++..    ....|.|.++..+|+|.|.
T Consensus         9 ~sl~-~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (107)
T d1d5il1           9 SSMY-ASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYY   87 (107)
T ss_dssp             SEEE-ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CEEE-ECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEEE
Confidence            3344 899999999999876655678999732  111            01123321    1247999999999999999


Q ss_pred             EEEEc
Q psy14542        291 CVANN  295 (371)
Q Consensus       291 C~a~n  295 (371)
                      |....
T Consensus        88 Ca~~~   92 (107)
T d1d5il1          88 CLQYD   92 (107)
T ss_dssp             EEECS
T ss_pred             eeecc
Confidence            98654

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=6.3e-06  Score=54.77  Aligned_cols=67  Identities=15%  Similarity=0.283  Sum_probs=45.6

Q ss_pred             eecCCeEEEEEEeecC-CC-CceEEEeCCcccccCCc-----eE------EecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        234 VKKDESVILPCSAQGN-PL-PTIKWYKQDSPVEESDR-----IQ------RIGSSLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~-----~~------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      ...++.++|.|.+.++ |. ..|.|.+||..+.....     ..      ...+.|.|..-.......|+|.+.+.....
T Consensus        16 ~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~~   95 (105)
T d1fp5a2          16 PGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAASP   95 (105)
T ss_dssp             SSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTSTT
T ss_pred             HhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCCCC
Confidence            3456779999999884 43 57999999987654321     11      122357776666666779999999866543

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.02  E-value=7.9e-06  Score=54.62  Aligned_cols=67  Identities=22%  Similarity=0.377  Sum_probs=45.4

Q ss_pred             eeeeeeeecCCeEEEEEEeecCCCCceEEEeCC--ccc------------ccCCceEE----ecceEEEeccCCCCCeEE
Q psy14542        228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQD--SPV------------EESDRIQR----IGSSLSISHVEESDSGVW  289 (371)
Q Consensus       228 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~~------------~~~~~~~~----~~~~l~i~~~~~~d~G~Y  289 (371)
                      |.... +.+|++++|.|.........+.|++..  +.+            ....++..    ....|.|.++..+|+|.|
T Consensus         8 P~~l~-~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~Y   86 (109)
T d1mqkl_           8 PVSLS-ASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSY   86 (109)
T ss_dssp             CSEEE-ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCEEE-ECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeE
Confidence            33444 889999999999875555569999832  111            01122221    123699999999999999


Q ss_pred             EEEEEc
Q psy14542        290 NCVANN  295 (371)
Q Consensus       290 ~C~a~n  295 (371)
                      .|.+..
T Consensus        87 yCA~~~   92 (109)
T d1mqkl_          87 YCQHHY   92 (109)
T ss_dssp             EEEECS
T ss_pred             EEeeeC
Confidence            998763

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=1.5e-05  Score=52.20  Aligned_cols=69  Identities=16%  Similarity=0.208  Sum_probs=44.2

Q ss_pred             ecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCcc
Q psy14542        109 DVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRY  187 (371)
Q Consensus       109 ~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~  187 (371)
                      ..|+.++|.|.+.++ |....++|.++|..+.......     .....+|.|         ...  +.|.+   ...+ .
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~-----~~~~~dgtf---------~~~--s~l~v---~~~~-~   75 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSD-----MSFSKDWSF---------YIL--AHTEF---TPTE-T   75 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEE-----EEECTTCCE---------EEE--EEEEE---CCCS-S
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECc-----eeECCCCCE---------EEE--EEeEe---cCcC-C
Confidence            468889999999886 4447999999999776432111     112233333         221  33433   4456 7


Q ss_pred             ceeEEEeecc
Q psy14542        188 RSYQCRGVNK  197 (371)
Q Consensus       188 g~y~C~~~~~  197 (371)
                      +.|+|.+.+.
T Consensus        76 ~~ytC~V~H~   85 (99)
T d1lk2b_          76 DTYACRVKHD   85 (99)
T ss_dssp             CCEEEEEECT
T ss_pred             CEEEEEEEeC
Confidence            7999999886

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.00  E-value=1e-05  Score=54.17  Aligned_cols=62  Identities=18%  Similarity=0.427  Sum_probs=43.7

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCc--cc------------ccCCceEE----ecceEEEeccCCCCCeEEEEEEEc
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDS--PV------------EESDRIQR----IGSSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~--~~------------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      +.+|++++|.|...+.....+.|++...  .+            ....++..    ....|.|.++..+|+|.|.|.+..
T Consensus        15 ~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~   94 (109)
T d1bwwa_          15 ASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQQYQ   94 (109)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             ECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceEEEeecC
Confidence            8999999999998765556789997321  11            01122221    113699999999999999998754

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=9.4e-06  Score=50.27  Aligned_cols=53  Identities=32%  Similarity=0.591  Sum_probs=41.9

Q ss_pred             eccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCc-CCCeEEEEEEE
Q psy14542         24 DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQR-EDAGMYQCHVS   79 (371)
Q Consensus        24 ~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~~~   79 (371)
                      ..|.+|+|+|...   ....|.|.+++..++......|.+.+... +|+|.|.|...
T Consensus        12 ISGTtV~LTCP~~---~~~~I~Wkkn~~~i~g~~~~~L~L~~FSE~e~SGyY~C~~~   65 (100)
T d1jbja2          12 ISGTSVELTCPLD---SDENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTP   65 (100)
T ss_dssp             EETTEEEEECSSC---CCTTCEEEETTEEECSCCCSEEEEESCCTTTSCEEEEEECS
T ss_pred             EeCCEEEEECCCC---CCCceEEeeccccCCCCCCcEEEEccccccccCcceEEecC
Confidence            4689999999432   23569999999999876566888888766 79999999654

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.00  E-value=2.5e-05  Score=52.59  Aligned_cols=67  Identities=25%  Similarity=0.409  Sum_probs=46.0

Q ss_pred             eeeeeeeecCCeEEEEEEeecC--CCCceEEEeC--Ccc----cccCCceEE--ec----ceEEEeccCCCCCeEEEEEE
Q psy14542        228 KHRILNVKKDESVILPCSAQGN--PLPTIKWYKQ--DSP----VEESDRIQR--IG----SSLSISHVEESDSGVWNCVA  293 (371)
Q Consensus       228 ~~~~~~~~~g~~~~l~C~~~~~--p~~~v~W~~~--~~~----~~~~~~~~~--~~----~~l~i~~~~~~d~G~Y~C~a  293 (371)
                      |.... +.+|++++|+|...+.  ....+.|++.  +..    +....++..  ..    ..|.|.+++.+|+|.|.|.+
T Consensus         7 P~s~~-~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~   85 (113)
T d1vesa_           7 PRTAT-KETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQA   85 (113)
T ss_dssp             CSEEE-ECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEE-EcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeee
Confidence            34444 8899999999998753  3356999973  221    222333331  11    26999999999999999998


Q ss_pred             Ec
Q psy14542        294 NN  295 (371)
Q Consensus       294 ~n  295 (371)
                      ..
T Consensus        86 ~~   87 (113)
T d1vesa_          86 FY   87 (113)
T ss_dssp             EE
T ss_pred             ec
Confidence            64

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.99  E-value=2e-05  Score=53.46  Aligned_cols=85  Identities=16%  Similarity=0.193  Sum_probs=48.4

Q ss_pred             CceeeecCCcEEEEEEecCCCCCceEEEeeC--CEEeeeCCeeEEEEcccCc----CCCeeEEEEEeCCceeEeccceEE
Q psy14542        104 NQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--GLVLRRNSDEVLVLDRVQR----EDAGMYQCHIEDGKYHMLSSGELI  177 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~----~~~g~y~~~~~~~~~~~~~~~~l~  177 (371)
                      +...+.+|++++|.|..........+.|++.  +...    ...+...+...    ...+.|........    .+..|+
T Consensus         8 ~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~----~~l~~~~~~~~~~~~~~~~rf~~~~~~~~----~~~~L~   79 (116)
T d1tvda_           8 PDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSF----QFVFYGDDSRSEGADFTQGRFSVKHILTQ----KAFHLV   79 (116)
T ss_dssp             CCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCE----EEEEEECSSCEEECGGGTTTEEEEEEGGG----TEEEEE
T ss_pred             CCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCce----EEeeecccccccccCccceEEEEEecCce----eEEeee
Confidence            3444589999999999865433368999972  2211    11122211111    11122222111111    114689


Q ss_pred             EEEeecCCccceeEEEeecc
Q psy14542        178 IHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       178 i~~~~~~d~~g~y~C~~~~~  197 (371)
                      |.+++.+| +|.|.|.+...
T Consensus        80 I~~~~~~D-sg~YyCa~~~~   98 (116)
T d1tvda_          80 ISPVRTED-SATYYCAFTLP   98 (116)
T ss_dssp             ESSCCGGG-CEEEEEEEECT
T ss_pred             ecCccccc-cccceeeEecC
Confidence            99999999 99999987654

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.99  E-value=7.8e-06  Score=53.29  Aligned_cols=71  Identities=20%  Similarity=0.266  Sum_probs=44.9

Q ss_pred             eecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCc
Q psy14542        108 VDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDR  186 (371)
Q Consensus       108 ~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~  186 (371)
                      ...++.++|.|.+.++ |....++|.++|..+.......    ......+|.|         ...  +.|.+   ...+ 
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~----~~~~~~dgty---------~~~--s~L~v---~~~~-   74 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHK----TAQPNGDWTY---------QTL--SHLAL---TPSY-   74 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBC----CCEECSSSCE---------EEE--EEEEE---CCCT-
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeC----ceEECCCCCE---------EEE--EEeEc---CCCC-
Confidence            3467889999999987 4468999999998775432111    1111223333         222  33443   4555 


Q ss_pred             cceeEEEeecc
Q psy14542        187 YRSYQCRGVNK  197 (371)
Q Consensus       187 ~g~y~C~~~~~  197 (371)
                      ...|+|.+.+.
T Consensus        75 ~~~ytC~V~H~   85 (98)
T d1hdmb1          75 GDTYTCVVEHI   85 (98)
T ss_dssp             TCCEEEEEECT
T ss_pred             CCEEEEEEEeC
Confidence            67899999987

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.99  E-value=8.6e-06  Score=54.27  Aligned_cols=62  Identities=23%  Similarity=0.408  Sum_probs=43.7

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeC--Cccc------------ccCCceEE----ecceEEEeccCCCCCeEEEEEEEc
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQ--DSPV------------EESDRIQR----IGSSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      +.+|++++|.|.........+.|++.  |..+            ....++..    ....|.|.+++.+|++.|.|.+..
T Consensus        13 ~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa~~~   92 (107)
T d1mexl1          13 TSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEYFCQQYN   92 (107)
T ss_dssp             ECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             ECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeEEEeECC
Confidence            89999999999976555567999973  2211            01123332    123699999999999999998653

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.3e-05  Score=54.22  Aligned_cols=68  Identities=18%  Similarity=0.277  Sum_probs=45.4

Q ss_pred             eeeeeeeeecCCeEEEEEEeecCC-CCceEEEeCC--cccc------------------cCCceEE--e--cceEEEecc
Q psy14542        227 EKHRILNVKKDESVILPCSAQGNP-LPTIKWYKQD--SPVE------------------ESDRIQR--I--GSSLSISHV  281 (371)
Q Consensus       227 ~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~~~--~~~~------------------~~~~~~~--~--~~~l~i~~~  281 (371)
                      .|.... +.+|++++|.|.+.+.. ...+.|++..  ..+.                  ...++..  .  ...|.|.++
T Consensus         6 sP~~~t-~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l   84 (114)
T d1akjd_           6 SPLDRT-WNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDF   84 (114)
T ss_dssp             ECCSCC-CCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSC
T ss_pred             CCCcEe-ccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccC
Confidence            344444 89999999999986533 4468999732  1110                  0122221  1  126999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy14542        282 EESDSGVWNCVANN  295 (371)
Q Consensus       282 ~~~d~G~Y~C~a~n  295 (371)
                      +.+|+|.|.|.+..
T Consensus        85 ~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          85 RRENEGYYFCSALS   98 (114)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CCCCCEEEeEeEcC
Confidence            99999999999864

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.98  E-value=2.2e-05  Score=51.13  Aligned_cols=72  Identities=21%  Similarity=0.353  Sum_probs=42.9

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC---------Cee---EEEEccCCcCCCeEEEE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN---------SDE---VLVLDRVQREDAGMYQC   76 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~---------~~~---~l~i~~~~~~d~G~Y~C   76 (371)
                      +|++.+.|..  ....|+..+|.|.+...+| ...+.|++||..+..+         .++   ......+...+...|+|
T Consensus         2 ~P~V~v~p~~--~~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC   79 (97)
T d1uvqb1           2 EPTVTISPSR--TEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTC   79 (97)
T ss_dssp             CCEEEEEEC----------CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEE
T ss_pred             CCEEEEecCC--cccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEE
Confidence            4666666655  2445778899997776666 4679999999877644         111   12222345556678999


Q ss_pred             EEEcCCC
Q psy14542         77 HVSADDD   83 (371)
Q Consensus        77 ~~~~~~~   83 (371)
                      .+....-
T Consensus        80 ~V~H~sl   86 (97)
T d1uvqb1          80 HVEHPSL   86 (97)
T ss_dssp             EEECTTC
T ss_pred             EEEeCCC
Confidence            9987644

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=5.5e-06  Score=54.81  Aligned_cols=73  Identities=19%  Similarity=0.298  Sum_probs=48.2

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC---------------CeeEEEEccCCcCCCe
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN---------------SDEVLVLDRVQREDAG   72 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~---------------~~~~l~i~~~~~~d~G   72 (371)
                      .+|+|.+.+.. .....++.++|.|.+....| ...|.|++||..+...               ..+.|.|..-......
T Consensus         4 ~~P~V~l~~ps-~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~   82 (102)
T d1q0xl2           4 SSPTVTLFPPS-SEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHS   82 (102)
T ss_dssp             BCCEEEEECCC-HHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCC
T ss_pred             CCCEEEEECCC-HHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCC
Confidence            46777777655 22234667899997766655 4579999999887644               2233455444334456


Q ss_pred             EEEEEEEcCC
Q psy14542         73 MYQCHVSADD   82 (371)
Q Consensus        73 ~Y~C~~~~~~   82 (371)
                      .|+|.+.+..
T Consensus        83 ~ytC~V~H~~   92 (102)
T d1q0xl2          83 SYSCQVTHEG   92 (102)
T ss_dssp             EEEEEEEETT
T ss_pred             EEEEEEEECC
Confidence            8999998754

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.97  E-value=4.4e-06  Score=55.42  Aligned_cols=62  Identities=26%  Similarity=0.424  Sum_probs=42.6

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCC--cccc------------cCCceEE----ecceEEEeccCCCCCeEEEEEEEc
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQD--SPVE------------ESDRIQR----IGSSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~~~------------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      +.+|++++|.|.........+.|++..  ..+.            ...++..    ....|.|.++..+|+|.|.|.+..
T Consensus        10 ~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~   89 (103)
T d8faba1          10 VSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYCQAWD   89 (103)
T ss_dssp             ECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEEEEEE
T ss_pred             ECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEeeecC
Confidence            889999999998765444568999732  1110            0112221    123699999999999999998754

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.3e-05  Score=51.72  Aligned_cols=59  Identities=19%  Similarity=0.251  Sum_probs=39.6

Q ss_pred             ccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC----------C---eeEEEEccCCcCCCeEEEEEEEcCCC
Q psy14542         25 VGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN----------S---DEVLVLDRVQREDAGMYQCHVSADDD   83 (371)
Q Consensus        25 ~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~----------~---~~~l~i~~~~~~d~G~Y~C~~~~~~~   83 (371)
                      .++.++|.|.+...+| ...+.|++||+.+...          .   -.......+...+...|+|.+.+..-
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~sl   86 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGL   86 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECTTS
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence            4677999997776666 4589999999987543          1   11122223445566789999987643

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=9e-06  Score=53.72  Aligned_cols=64  Identities=16%  Similarity=0.271  Sum_probs=43.6

Q ss_pred             cCCeEEEEEEeecC-CC-CceEEEeCCcccccCCc----e------EEecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        236 KDESVILPCSAQGN-PL-PTIKWYKQDSPVEESDR----I------QRIGSSLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       236 ~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~----~------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      .++.++|.|.+.++ |. ..|+|.+||..+..+..    .      ....+.|.|..-.......|+|++.+....
T Consensus        19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~~   94 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHS   94 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred             CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCcc
Confidence            35678999999985 43 47999999986543211    1      112235777766666778999999986543

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=2.6e-05  Score=52.40  Aligned_cols=64  Identities=17%  Similarity=0.331  Sum_probs=40.5

Q ss_pred             eecCCeEEEEEEeecCCC---CceEE--EeCCccc------------ccC----CceE--EecceEEEeccCCCCCeEEE
Q psy14542        234 VKKDESVILPCSAQGNPL---PTIKW--YKQDSPV------------EES----DRIQ--RIGSSLSISHVEESDSGVWN  290 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~---~~v~W--~~~~~~~------------~~~----~~~~--~~~~~l~i~~~~~~d~G~Y~  290 (371)
                      +..|++++|.|.....+.   ..+.|  .++...+            ...    .+..  ..+.+|.|.+++.+|+|.|.
T Consensus         6 a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~Y~   85 (110)
T d1ncna_           6 AYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQ   85 (110)
T ss_dssp             EETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEEEE
T ss_pred             EEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEEEE
Confidence            788999999999763222   22334  3433211            000    1111  23357999999999999999


Q ss_pred             EEEEcCC
Q psy14542        291 CVANNSE  297 (371)
Q Consensus       291 C~a~n~~  297 (371)
                      |.+....
T Consensus        86 C~V~~~~   92 (110)
T d1ncna_          86 CIIHHKK   92 (110)
T ss_dssp             EEEEEEC
T ss_pred             EEEEecC
Confidence            9997543

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.95  E-value=2.9e-05  Score=53.06  Aligned_cols=60  Identities=22%  Similarity=0.426  Sum_probs=42.4

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEeC--C---EEEee----------C---------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKD--G---LVLRR----------N---------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~--~---~~~~~----------~---------------~~~~l~i~~~~~~   69 (371)
                      +...+|++++|.|.+... .....+.|||-  |   +.+..          .               ....|.|.+++.+
T Consensus        11 ~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~~   90 (123)
T d1hxmb1          11 STKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQ   90 (123)
T ss_dssp             EEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccccc
Confidence            678889999999976532 23446899871  1   11110          0               3467999999999


Q ss_pred             CCeEEEEEEEc
Q psy14542         70 DAGMYQCHVSA   80 (371)
Q Consensus        70 d~G~Y~C~~~~   80 (371)
                      |+|.|.|....
T Consensus        91 Dsa~YyCA~~~  101 (123)
T d1hxmb1          91 DIATYYCALWE  101 (123)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCcEEEEeeeC
Confidence            99999999764

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.94  E-value=1.7e-05  Score=51.66  Aligned_cols=70  Identities=17%  Similarity=0.213  Sum_probs=41.2

Q ss_pred             ecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCcc
Q psy14542        109 DVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRY  187 (371)
Q Consensus       109 ~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~  187 (371)
                      ..++..+|.|.+.++ |....++|.++|..+....    .........+|.|.         ..  +.|.+   ...+ .
T Consensus        14 ~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~----~~~~~~~~~dgty~---------~~--s~l~v---~~~~-~   74 (97)
T d1uvqb1          14 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGV----VSTPLIRNGDWTFQ---------IL--VMLEM---TPQR-G   74 (97)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEEECTTE----EECCCEECSSSCEE---------EE--EEEEC---CSCT-T
T ss_pred             cCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCc----EeceeecCCCceEE---------EE--EEecc---CCCC-C
Confidence            446677999999887 4458999999998765432    11122223334332         21  33333   4556 7


Q ss_pred             ceeEEEeecc
Q psy14542        188 RSYQCRGVNK  197 (371)
Q Consensus       188 g~y~C~~~~~  197 (371)
                      ..|+|.+.+.
T Consensus        75 ~~ytC~V~H~   84 (97)
T d1uvqb1          75 DVYTCHVEHP   84 (97)
T ss_dssp             CCEEEEEECT
T ss_pred             CEEEEEEEeC
Confidence            7999999886

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.94  E-value=1.2e-05  Score=54.55  Aligned_cols=62  Identities=24%  Similarity=0.390  Sum_probs=43.0

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeC--Ccccc-------cC------Cc--eE----EecceEEEeccCCCCCeEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQ--DSPVE-------ES------DR--IQ----RIGSSLSISHVEESDSGVWNCV  292 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~~-------~~------~~--~~----~~~~~l~i~~~~~~d~G~Y~C~  292 (371)
                      +.+|++++|.|.........+.|++.  +..+.       ..      .+  ..    .....|.|.++..+|+|.|.|.
T Consensus        12 v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa   91 (115)
T d1i9ea_          12 VSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCA   91 (115)
T ss_dssp             EETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCEEEEEE
T ss_pred             ECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccceeccc
Confidence            89999999999987655567899972  22110       00      01  11    1123699999999999999998


Q ss_pred             EEc
Q psy14542        293 ANN  295 (371)
Q Consensus       293 a~n  295 (371)
                      +..
T Consensus        92 ~~~   94 (115)
T d1i9ea_          92 VSG   94 (115)
T ss_dssp             EEE
T ss_pred             ccC
Confidence            763

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=4.9e-05  Score=49.14  Aligned_cols=77  Identities=17%  Similarity=0.213  Sum_probs=47.0

Q ss_pred             cccceeeeeeeeeeeecCCeEEEEEEeecC-CC-CceEEEeCCcccccCCceE---Eecce---EEEeccCCCCCeEEEE
Q psy14542        220 LSAAKMFEKHRILNVKKDESVILPCSAQGN-PL-PTIKWYKQDSPVEESDRIQ---RIGSS---LSISHVEESDSGVWNC  291 (371)
Q Consensus       220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~~~---~~~~~---l~i~~~~~~d~G~Y~C  291 (371)
                      .||.+.+...    ...|+.++|.|.+.|+ |. ..++|.+||..+.......   ..+++   .....+...+...|+|
T Consensus         2 ~PP~V~v~~~----~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC   77 (94)
T d1t7va1           2 DPPSVVVTSH----QAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSC   77 (94)
T ss_dssp             BCCEEEEEEE----ECTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEE
T ss_pred             cCCEeEEecc----CCCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEE
Confidence            3455554332    3457889999999995 44 4699999998765432211   11111   2223344556678999


Q ss_pred             EEEcCCCCc
Q psy14542        292 VANNSEGQD  300 (371)
Q Consensus       292 ~a~n~~g~~  300 (371)
                      ++.+..-..
T Consensus        78 ~V~H~sl~~   86 (94)
T d1t7va1          78 HVQHSSLAQ   86 (94)
T ss_dssp             EEEETTCSS
T ss_pred             EEEECCCCC
Confidence            998865443

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.93  E-value=1.6e-05  Score=53.83  Aligned_cols=85  Identities=15%  Similarity=0.199  Sum_probs=46.9

Q ss_pred             eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCC--CeeEEEEEeCCceeEeccceEEEEEeec
Q psy14542        106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRED--AGMYQCHIEDGKYHMLSSGELIIHQVDE  183 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~y~~~~~~~~~~~~~~~~l~i~~~~~  183 (371)
                      ..+.+|++|+|.|..........+.||+...  .......+.........  .+.+.......    ..+..|.|.+++.
T Consensus        10 v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~--g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~L~I~~~~~   83 (114)
T d2ak4d1          10 ISVVEKEDVTLDCVYETRDTTYYLFWYKQPP--SGELVFLIRRNSFDEQNEISGRYSWNFQKS----TSSFNFTITASQV   83 (114)
T ss_dssp             EEEETTCCEEECCEEECSCSSCEEEEEEECT--TCCCEEEEEEETTSCSEEEETTEEEEEETT----TTEEEEEESSCCG
T ss_pred             EEEeCCCCEEEEEEEcCCCcCccEEEEEccc--cCcceEeeeEeeeeecCCCCcceEEEEcCC----CCEEEEeeccccc
Confidence            3458999999999876544335689998321  01111122222111111  11111111110    0124799999999


Q ss_pred             CCccceeEEEeecc
Q psy14542        184 SDRYRSYQCRGVNK  197 (371)
Q Consensus       184 ~d~~g~y~C~~~~~  197 (371)
                      +| +|.|.|.+...
T Consensus        84 ~D-sg~YyCa~~~~   96 (114)
T d2ak4d1          84 VD-SAVYFCALSGF   96 (114)
T ss_dssp             GG-CEEEEEEEECS
T ss_pred             cc-CCCceEeCCCC
Confidence            99 99999987654

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.93  E-value=3e-05  Score=49.75  Aligned_cols=61  Identities=15%  Similarity=0.242  Sum_probs=40.3

Q ss_pred             cCCeEEEEEEeecC-CC-CceEEEeCCcccccCCceEE--ec------ceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        236 KDESVILPCSAQGN-PL-PTIKWYKQDSPVEESDRIQR--IG------SSLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       236 ~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~~~~--~~------~~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      .+..++|.|.+.|+ |. ..++|.+||..+........  .+      +.|.+.   .++...|+|++....-.
T Consensus        14 ~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~---~~~~~~ytC~V~H~sL~   84 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVK---RGDEHHYQCQVEHEGLA   84 (91)
T ss_dssp             STTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEEE---TTCGGGEEEEEECTTSS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEEC---CCCCCEEEEEEEeCCCC
Confidence            35678999999995 44 46999999987654321111  11      234443   45667999999876544

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1.7e-05  Score=51.19  Aligned_cols=71  Identities=21%  Similarity=0.281  Sum_probs=43.8

Q ss_pred             ecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCcc
Q psy14542        109 DVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRY  187 (371)
Q Consensus       109 ~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~  187 (371)
                      ..++.++|.|.+.++ |....++|.++|..+.......   .....+.+|.|         ...  +.|   .+...+ .
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~---~~~~~~~~~t~---------~~~--s~l---~v~~~~-~   74 (94)
T d1de4a1          13 VTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEP---KDVLPNGDGTY---------QGW--ITL---AVPPGE-E   74 (94)
T ss_dssp             ECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCC---CEEEECTTSCE---------EEE--EEE---EECTTC-G
T ss_pred             CCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccc---cceEeCCCceE---------EEE--EEE---EECCCC-C
Confidence            356789999999986 5568999999999875432110   01111122222         111  233   345566 7


Q ss_pred             ceeEEEeecc
Q psy14542        188 RSYQCRGVNK  197 (371)
Q Consensus       188 g~y~C~~~~~  197 (371)
                      ..|+|.+.+.
T Consensus        75 ~~ytC~V~H~   84 (94)
T d1de4a1          75 QRYTCQVEHP   84 (94)
T ss_dssp             GGEEEEEECT
T ss_pred             CEEEEEEEeC
Confidence            7899999986

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.90  E-value=1.8e-05  Score=53.80  Aligned_cols=65  Identities=28%  Similarity=0.494  Sum_probs=45.6

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeC--Ccccc-----------------cCCceEEe-----cceEEEeccCCCCCeEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQ--DSPVE-----------------ESDRIQRI-----GSSLSISHVEESDSGVW  289 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~~-----------------~~~~~~~~-----~~~l~i~~~~~~d~G~Y  289 (371)
                      +.+|++++|.|...+.....+.|++.  |+.+.                 ...++...     ...|.|.++..+|+|.|
T Consensus        13 ~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa~Y   92 (118)
T d2ij0c1          13 VKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPEDSGFY   92 (118)
T ss_dssp             ECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGGGCEEE
T ss_pred             EcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccccccCceE
Confidence            89999999999987665667999973  22110                 11222211     13599999999999999


Q ss_pred             EEEEEcCCC
Q psy14542        290 NCVANNSEG  298 (371)
Q Consensus       290 ~C~a~n~~g  298 (371)
                      .|.+....+
T Consensus        93 yCa~~~~~~  101 (118)
T d2ij0c1          93 VCSALAGSG  101 (118)
T ss_dssp             EEEEECSSC
T ss_pred             EEEEecCCC
Confidence            999865433

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=4.6e-05  Score=49.61  Aligned_cols=80  Identities=16%  Similarity=0.143  Sum_probs=49.1

Q ss_pred             ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccce
Q psy14542         96 ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE  175 (371)
Q Consensus        96 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~  175 (371)
                      ..|.+...+...+..|++|+|.|......  ..+.++|++..........      +.             .........
T Consensus         3 pkPsLsa~P~~~v~~G~~VTL~C~~~~~~--~~f~L~k~g~~~~~~~~~~------~~-------------~~~~~~~a~   61 (98)
T d1ugna2           3 IKPTLSAQPSPVVNSGGNVTLQCDSQVAF--DGFILCKEGEDEHPQCLNS------QP-------------HARGSSRAI   61 (98)
T ss_dssp             CCCEEEEESCSEEETTCCEEEEEECSSCC--SEEEEEEC------CEEEC-------------------------CCEEE
T ss_pred             CCCEEEeeCCCccCCCCcEEEEeCCCCCC--CEEEEEECCCcCCcEeeee------EE-------------cCCCceEEE
Confidence            45667777777779999999999976443  5888888876533211000      00             000001146


Q ss_pred             EEEEEeecCCccceeEEEeecc
Q psy14542        176 LIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      +.|.+++..| .|.|+|.....
T Consensus        62 F~l~~v~~~~-~G~Y~C~y~~~   82 (98)
T d1ugna2          62 FSVGPVSPSR-RWWYRCYAYDS   82 (98)
T ss_dssp             EEECCCCTTS-CEEEEEEEECT
T ss_pred             EEeeecccCC-CeEEEEeeEcC
Confidence            8899999999 99999987654

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.89  E-value=6.7e-05  Score=50.32  Aligned_cols=62  Identities=27%  Similarity=0.463  Sum_probs=43.4

Q ss_pred             eecCCeEEEEEEeecCC--CCceEEEeCCc--cc------------ccCCceEEe----cceEEEeccCCCCCeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNP--LPTIKWYKQDS--PV------------EESDRIQRI----GSSLSISHVEESDSGVWNCVA  293 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p--~~~v~W~~~~~--~~------------~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a  293 (371)
                      +.+|++++|.|...+..  ...+.|++...  .+            ....++...    ...|.|.++..+|++.|.|.+
T Consensus        12 v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~YyCA~   91 (114)
T d2rhea_          12 GTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYYCAA   91 (114)
T ss_dssp             ECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             eCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEEEee
Confidence            88999999999986543  45699997432  10            011223211    236999999999999999987


Q ss_pred             Ec
Q psy14542        294 NN  295 (371)
Q Consensus       294 ~n  295 (371)
                      ..
T Consensus        92 ~~   93 (114)
T d2rhea_          92 WN   93 (114)
T ss_dssp             EE
T ss_pred             cC
Confidence            64

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=7.8e-06  Score=54.73  Aligned_cols=65  Identities=17%  Similarity=0.385  Sum_probs=45.1

Q ss_pred             eecCCeEEEEEEeecC-CC-CceEEEeCCcccccCCceE--------------EecceEEEeccCCCCCeEEEEEEEcCC
Q psy14542        234 VKKDESVILPCSAQGN-PL-PTIKWYKQDSPVEESDRIQ--------------RIGSSLSISHVEESDSGVWNCVANNSE  297 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~~~--------------~~~~~l~i~~~~~~d~G~Y~C~a~n~~  297 (371)
                      +..++.++|.|.+.++ |. ..|.|++||..+.......              ...+.|.|..-.......|+|++.+..
T Consensus        17 ~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          17 LALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEA   96 (108)
T ss_dssp             TTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTT
T ss_pred             hccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEeCC
Confidence            5567889999999984 44 3799999998765432111              122356676666566779999998865


Q ss_pred             C
Q psy14542        298 G  298 (371)
Q Consensus       298 g  298 (371)
                      -
T Consensus        97 l   97 (108)
T d1ow0a2          97 L   97 (108)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.88  E-value=2.7e-05  Score=51.54  Aligned_cols=65  Identities=26%  Similarity=0.419  Sum_probs=42.7

Q ss_pred             eeeeeeeecCCeEEEEEEeecCCCCceEEEeCCc--cc------------ccCCceEE----ecceEEEeccCCCCCeEE
Q psy14542        228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDS--PV------------EESDRIQR----IGSSLSISHVEESDSGVW  289 (371)
Q Consensus       228 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~--~~------------~~~~~~~~----~~~~l~i~~~~~~d~G~Y  289 (371)
                      |.... +.+|++++|.|.... ....+.|++...  .+            ....++..    ....|.|.++..+|+|.|
T Consensus         7 P~~l~-~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (104)
T d1yqvl1           7 PAIMS-ASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATY   84 (104)
T ss_dssp             SSEEE-ECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCeEE-ECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeE
Confidence            33444 899999999998653 334589997321  10            01112221    123699999999999999


Q ss_pred             EEEEE
Q psy14542        290 NCVAN  294 (371)
Q Consensus       290 ~C~a~  294 (371)
                      .|.+.
T Consensus        85 yCa~~   89 (104)
T d1yqvl1          85 YCQQW   89 (104)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            99764

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=4.8e-05  Score=45.49  Aligned_cols=58  Identities=16%  Similarity=0.349  Sum_probs=40.9

Q ss_pred             eecCCeEEEEEEeecCCCC--ceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLP--TIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVAN  294 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  294 (371)
                      ...|..+.|+|.....+.+  .-.|.|+|+.+..... ......+.|..  .+++|.|.|+.-
T Consensus         9 ~~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~-~~~~tey~V~~--~D~SGeY~CVFl   68 (80)
T d3b5ha2           9 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL-PGQKTEFKVDS--DDQWGEYSCVFL   68 (80)
T ss_dssp             EEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTC-CCSEEEEEECG--GGCCEEEEEEEE
T ss_pred             ccCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCC-CCCceEEEEec--CCCCceEEEEEc
Confidence            4567888999998764432  4799999998886532 22223466654  779999999964

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=5.6e-06  Score=56.62  Aligned_cols=85  Identities=14%  Similarity=0.075  Sum_probs=46.0

Q ss_pred             CceeeecCCcEEEEEEecCC---C--CCceEEEeeCCEEeeeCCeeEEEEccc----CcCCCeeEEEEEeCCceeEeccc
Q psy14542        104 NQVVVDVGHRIELHCRVSPK---R--LSSAKAWLKDGLVLRRNSDEVLVLDRV----QREDAGMYQCHIEDGKYHMLSSG  174 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~---~--~~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~g~y~~~~~~~~~~~~~~~  174 (371)
                      ....+.+|+.|+|.|.+...   .  ....+.|++.....    ...+.....    .....+.+......    ...+.
T Consensus         8 ~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~----~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~~   79 (118)
T d1qfoa_           8 KNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGK----RQVVIHSGDPKLVDKRFRGRAELMGNM----DHKVC   79 (118)
T ss_dssp             SEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTT----CEEEEESSCGGGSCTTTTTTEEECSCG----GGTBC
T ss_pred             CEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceec----cceeeeeccccccccccCCCeEEEEeC----cCCEE
Confidence            34445899999999998421   1  11456677643211    111111111    11112222111000    01235


Q ss_pred             eEEEEEeecCCccceeEEEeecc
Q psy14542        175 ELIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      +|.|.+++.+| +|.|.|.+...
T Consensus        80 sL~I~~v~~~D-sG~Y~C~v~~~  101 (118)
T d1qfoa_          80 NLLLKDLKPED-SGTYNFRFEIS  101 (118)
T ss_dssp             CEEECSCCGGG-CEEEEEEEECC
T ss_pred             EEEECCCChhH-CEEEEEEEEeC
Confidence            79999999999 99999999765

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.87  E-value=2.6e-05  Score=52.59  Aligned_cols=64  Identities=23%  Similarity=0.527  Sum_probs=43.2

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCC--cccc------cC----CceE-------EecceEEEeccCCCCCeEEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQD--SPVE------ES----DRIQ-------RIGSSLSISHVEESDSGVWNCVAN  294 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~~~------~~----~~~~-------~~~~~l~i~~~~~~d~G~Y~C~a~  294 (371)
                      +.+|++++|.|.... ....+.|++..  ..+.      ..    ....       .....|.|.++..+|+|.|.|.+.
T Consensus        13 v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (113)
T d1h5ba_          13 LHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAAE   91 (113)
T ss_dssp             EETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEEEEEec
Confidence            899999999999764 34569999832  2110      00    0000       111369999999999999999987


Q ss_pred             cCCC
Q psy14542        295 NSEG  298 (371)
Q Consensus       295 n~~g  298 (371)
                      ...+
T Consensus        92 ~~~~   95 (113)
T d1h5ba_          92 ASSG   95 (113)
T ss_dssp             CSSS
T ss_pred             CCCC
Confidence            5443

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.86  E-value=4.6e-05  Score=49.65  Aligned_cols=69  Identities=19%  Similarity=0.287  Sum_probs=47.4

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCC-CeeEEEeCCEEEeeC---------C------eeEEEEccCCcCCCe
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRN---------S------DEVLVLDRVQREDAG   72 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~~~---------~------~~~l~i~~~~~~d~G   72 (371)
                      .+|.+.+.+..  ....|+..+|.|.+...+|. ..++|++||..+..+         .      ...|.+   ..++..
T Consensus         4 ~~P~V~v~~~~--~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v---~~~~~~   78 (99)
T d1uvqa1           4 EVPEVTVFSKS--PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTF---LPSADE   78 (99)
T ss_dssp             CCCEEEEEESS--CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEE---CCCTTC
T ss_pred             cCCEEEEEcCC--cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEE---cCCCCC
Confidence            46777776654  25678899999977666554 569999999987643         1      222333   345556


Q ss_pred             EEEEEEEcCC
Q psy14542         73 MYQCHVSADD   82 (371)
Q Consensus        73 ~Y~C~~~~~~   82 (371)
                      .|+|++.+..
T Consensus        79 ~ytC~V~H~s   88 (99)
T d1uvqa1          79 IYDCKVEHWG   88 (99)
T ss_dssp             CEEEEEECTT
T ss_pred             EEEEEEEeCC
Confidence            8999998754

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.86  E-value=1.8e-05  Score=53.14  Aligned_cols=62  Identities=24%  Similarity=0.452  Sum_probs=41.6

Q ss_pred             eecCCeEEEEEEeecC----CCCceEEEeC--Ccccc------------cCCceEE----ecceEEEeccCCCCCeEEEE
Q psy14542        234 VKKDESVILPCSAQGN----PLPTIKWYKQ--DSPVE------------ESDRIQR----IGSSLSISHVEESDSGVWNC  291 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~----p~~~v~W~~~--~~~~~------------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C  291 (371)
                      +.+|++++|.|.....    ....+.|++.  |..+.            ...++..    ....|.|.+++.+|+|.|.|
T Consensus        13 v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   92 (111)
T d1j05a_          13 VSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVATYYC   92 (111)
T ss_dssp             CCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGCEEEEE
T ss_pred             ECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccCccEEE
Confidence            8899999999987532    2234999973  22111            1112221    22379999999999999999


Q ss_pred             EEEc
Q psy14542        292 VANN  295 (371)
Q Consensus       292 ~a~n  295 (371)
                      .+.+
T Consensus        93 a~~~   96 (111)
T d1j05a_          93 QQTN   96 (111)
T ss_dssp             EECS
T ss_pred             eecC
Confidence            8764

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.86  E-value=1.4e-05  Score=54.29  Aligned_cols=86  Identities=21%  Similarity=0.265  Sum_probs=48.7

Q ss_pred             ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCC--CeeEEEEEeCCceeEeccceEEEEEee
Q psy14542        105 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRED--AGMYQCHIEDGKYHMLSSGELIIHQVD  182 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~--~g~y~~~~~~~~~~~~~~~~l~i~~~~  182 (371)
                      ...+.+|++|+|.|..........+.||+...  .......+........+  .+.+........    ....|.|.+++
T Consensus         8 ~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~--g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~L~I~~~~   81 (115)
T d1fo0a_           8 SISVMEKTTVTMDCVYETQDSSYFLFWYKQTA--SGEIVFLIRQDSYKKENATVGHYSLNFQKPK----SSIGLIITATQ   81 (115)
T ss_dssp             EEEEETTCCEEECCEECCCCSSCEEEEEEECT--TCCEEEEEEEETTCCSCCEETTEEEEEEGGG----TEEEEEECSCC
T ss_pred             EEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCC--CCCCEEEEEEecceeecccCCceEEEEeccC----CEEEEEECCCC
Confidence            34458999999999986544335689998321  00111122222212111  122222221111    12469999999


Q ss_pred             cCCccceeEEEeecc
Q psy14542        183 ESDRYRSYQCRGVNK  197 (371)
Q Consensus       183 ~~d~~g~y~C~~~~~  197 (371)
                      .+| +|.|.|.+...
T Consensus        82 ~~D-sa~YyCa~~~~   95 (115)
T d1fo0a_          82 IED-SAVYFCAMRGD   95 (115)
T ss_dssp             GGG-CEEEEEEEECC
T ss_pred             ccc-cccccceeecC
Confidence            999 99999987644

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.85  E-value=3.1e-05  Score=52.00  Aligned_cols=62  Identities=26%  Similarity=0.392  Sum_probs=43.6

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeC--Ccccc------------cCCceEE------ecceEEEeccCCCCCeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQ--DSPVE------------ESDRIQR------IGSSLSISHVEESDSGVWNCVA  293 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~~------------~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~a  293 (371)
                      +.+|++++|.|.........+.|++.  |+.+.            ...++..      ....|.|.++..+|+|.|.|.+
T Consensus        12 ~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   91 (111)
T d1bd2d1          12 VQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAVYFCAA   91 (111)
T ss_dssp             EETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEEEEeec
Confidence            88999999999877655567899973  22111            1122221      1237999999999999999987


Q ss_pred             Ec
Q psy14542        294 NN  295 (371)
Q Consensus       294 ~n  295 (371)
                      ..
T Consensus        92 ~~   93 (111)
T d1bd2d1          92 ME   93 (111)
T ss_dssp             ES
T ss_pred             cC
Confidence            64

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.85  E-value=1.5e-05  Score=54.10  Aligned_cols=62  Identities=23%  Similarity=0.407  Sum_probs=43.1

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCC--ccc------------ccCCceEE--e--cceEEEeccCCCCCeEEEEEEEc
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQD--SPV------------EESDRIQR--I--GSSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~~------------~~~~~~~~--~--~~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      +.+|++++|.|...+.....+.|++..  ..+            ....++..  .  ...|.|.++..+|+|.|.|.+..
T Consensus        13 ~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYyCa~~~   92 (119)
T d1f3rb2          13 ASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYN   92 (119)
T ss_dssp             CCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEES
T ss_pred             ECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEEeeccC
Confidence            889999999998765545569999732  111            01122221  1  13699999999999999998653

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.84  E-value=3.3e-05  Score=51.74  Aligned_cols=68  Identities=21%  Similarity=0.382  Sum_probs=44.4

Q ss_pred             eeeeeeeecCCeEEEEEEeecC----CCCceEEEeC--Cccc------------ccCCceEEe----cceEEEeccCCCC
Q psy14542        228 KHRILNVKKDESVILPCSAQGN----PLPTIKWYKQ--DSPV------------EESDRIQRI----GSSLSISHVEESD  285 (371)
Q Consensus       228 ~~~~~~~~~g~~~~l~C~~~~~----p~~~v~W~~~--~~~~------------~~~~~~~~~----~~~l~i~~~~~~d  285 (371)
                      |.... +.+|++++|.|..+..    ....+.|++.  |..+            ....++...    ...|.|.++..+|
T Consensus         8 P~s~s-~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~D   86 (111)
T d2gsia1           8 PASLA-VSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEED   86 (111)
T ss_dssp             CSEEE-EETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCEEE-ECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccC
Confidence            33444 8999999999987542    1224899873  2211            011233321    2369999999999


Q ss_pred             CeEEEEEEEcC
Q psy14542        286 SGVWNCVANNS  296 (371)
Q Consensus       286 ~G~Y~C~a~n~  296 (371)
                      ++.|.|.+...
T Consensus        87 sA~YyCa~~~~   97 (111)
T d2gsia1          87 AATYYCSHIRE   97 (111)
T ss_dssp             CEEEEEEECSS
T ss_pred             CceEEEEECCC
Confidence            99999986543

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.84  E-value=3.4e-05  Score=52.07  Aligned_cols=67  Identities=21%  Similarity=0.526  Sum_probs=44.5

Q ss_pred             eeeeeeecCCeEEEEEEeecCCCCceEEEeCC--ccc------------ccCCceE--E----ecceEEEeccCCCCCeE
Q psy14542        229 HRILNVKKDESVILPCSAQGNPLPTIKWYKQD--SPV------------EESDRIQ--R----IGSSLSISHVEESDSGV  288 (371)
Q Consensus       229 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~~------------~~~~~~~--~----~~~~l~i~~~~~~d~G~  288 (371)
                      .... +.+|++++|.|...+. ...+.|++..  ..+            ....++.  .    ....|.|.++..+|+|.
T Consensus         8 ~~~~-~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   85 (115)
T d1ogad1           8 QFLS-IQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGL   85 (115)
T ss_dssp             SEEE-EETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             CeEE-ECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceee
Confidence            3344 8999999999997643 3479999732  111            0111111  1    12369999999999999


Q ss_pred             EEEEEEcCC
Q psy14542        289 WNCVANNSE  297 (371)
Q Consensus       289 Y~C~a~n~~  297 (371)
                      |.|.+....
T Consensus        86 YyCa~~~~~   94 (115)
T d1ogad1          86 YLCAGAGSQ   94 (115)
T ss_dssp             EEEEEECTT
T ss_pred             EcccccCCC
Confidence            999886443

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.84  E-value=1.3e-05  Score=53.89  Aligned_cols=62  Identities=29%  Similarity=0.477  Sum_probs=42.6

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeC--Ccccc------------cCCceEE------ecceEEEeccCCCCCeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQ--DSPVE------------ESDRIQR------IGSSLSISHVEESDSGVWNCVA  293 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~~------------~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~a  293 (371)
                      +.+|++++|.|.........+.|++.  |..+.            ...+...      ....|.|.++..+|+|.|.|.+
T Consensus        11 ~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   90 (110)
T d1u3ha1          11 VWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAA   90 (110)
T ss_dssp             EETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSEEEECC
T ss_pred             EcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCceeEeeee
Confidence            88999999999987544456999973  22111            0011111      1136999999999999999987


Q ss_pred             Ec
Q psy14542        294 NN  295 (371)
Q Consensus       294 ~n  295 (371)
                      ..
T Consensus        91 ~~   92 (110)
T d1u3ha1          91 SA   92 (110)
T ss_dssp             EE
T ss_pred             cC
Confidence            63

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=7.3e-06  Score=54.20  Aligned_cols=63  Identities=19%  Similarity=0.328  Sum_probs=41.8

Q ss_pred             cCCeEEEEEEeecC-CC-CceEEEeCCcccccCCc----eEEec------ceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542        236 KDESVILPCSAQGN-PL-PTIKWYKQDSPVEESDR----IQRIG------SSLSISHVEESDSGVWNCVANNSEG  298 (371)
Q Consensus       236 ~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~----~~~~~------~~l~i~~~~~~d~G~Y~C~a~n~~g  298 (371)
                      .++.++|.|.+.++ |. ..|.|.+||..+..+..    ....+      +.|.|..........|+|++.+...
T Consensus        19 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (102)
T d1rzfl2          19 QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGS   93 (102)
T ss_dssp             HTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETTE
T ss_pred             cCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECCc
Confidence            35678999999984 43 46999999987654311    11112      3466655554556689999998643

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.83  E-value=1.8e-05  Score=52.79  Aligned_cols=76  Identities=14%  Similarity=0.244  Sum_probs=48.2

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCCC-CeeEEEeCCEEEeeC----------Ce------eEEEEccCCcCC
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRN----------SD------EVLVLDRVQRED   70 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~~~----------~~------~~l~i~~~~~~d   70 (371)
                      ..+|+|.+.|+. .....++.++|.|.+....|. ..|.|++||..+...          .+      +.|.|..-....
T Consensus         3 ~~~P~V~l~~ps-~~~~~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~   81 (107)
T d1mjul2           3 DAAPTVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYER   81 (107)
T ss_dssp             CBCCEEEEECCC-HHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHT
T ss_pred             CcCCEEEEECCC-HHHhcCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCC
Confidence            346777777765 222346789999977665554 579999999877543          11      234443333223


Q ss_pred             CeEEEEEEEcCCCC
Q psy14542         71 AGMYQCHVSADDDS   84 (371)
Q Consensus        71 ~G~Y~C~~~~~~~~   84 (371)
                      ...|+|.+.+....
T Consensus        82 g~~ytC~V~H~~~~   95 (107)
T d1mjul2          82 HNSYTCEATHKTST   95 (107)
T ss_dssp             CCEEEEEEECTTCS
T ss_pred             CCEEEEEEEECCCC
Confidence            45899999876543

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.82  E-value=1.4e-05  Score=53.46  Aligned_cols=66  Identities=24%  Similarity=0.402  Sum_probs=43.8

Q ss_pred             eeeeeeecCCeEEEEEEeecC-CCCceEEEeCC--ccc------------ccCCceEE----ecceEEEeccCCCCCeEE
Q psy14542        229 HRILNVKKDESVILPCSAQGN-PLPTIKWYKQD--SPV------------EESDRIQR----IGSSLSISHVEESDSGVW  289 (371)
Q Consensus       229 ~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~--~~~------------~~~~~~~~----~~~~l~i~~~~~~d~G~Y  289 (371)
                      .... +.+|++++|.|..... ....+.|++..  ..+            ....++..    ....|.|.++..+|+|.|
T Consensus         9 ~~~~-v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa~Y   87 (108)
T d2fx7l1           9 GTQS-LSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVY   87 (108)
T ss_dssp             SEEE-ECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             CeEE-ECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccEEE
Confidence            3344 8999999999987643 23458899742  211            11122221    123699999999999999


Q ss_pred             EEEEEc
Q psy14542        290 NCVANN  295 (371)
Q Consensus       290 ~C~a~n  295 (371)
                      .|.+..
T Consensus        88 yCa~~~   93 (108)
T d2fx7l1          88 YCQQYG   93 (108)
T ss_dssp             EEEECS
T ss_pred             eeecCC
Confidence            998753

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.82  E-value=9e-05  Score=47.23  Aligned_cols=69  Identities=14%  Similarity=0.303  Sum_probs=44.1

Q ss_pred             cCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccc
Q psy14542        110 VGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYR  188 (371)
Q Consensus       110 ~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g  188 (371)
                      .++.++|.|.+.++ |....++|.++|..+.....    ......+..|.|.         ..  +.|.+.   ..+ ..
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~----~~~~~~~~~gt~~---------~~--s~l~v~---~~~-~~   74 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDME----LVETRPAGDGTFQ---------KW--ASVVVP---LGK-EQ   74 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCE----ECCCEECSSSCEE---------EE--EEEEEE---SST-TT
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEE----ECcEecCCCCcEE---------EE--EEEEec---CcC-CC
Confidence            46789999999987 44588999999988765421    1122233333332         21  345443   345 56


Q ss_pred             eeEEEeecc
Q psy14542        189 SYQCRGVNK  197 (371)
Q Consensus       189 ~y~C~~~~~  197 (371)
                      .|+|.+.+.
T Consensus        75 ~ytC~V~H~   83 (89)
T d2mhaa1          75 YYTCHVYHQ   83 (89)
T ss_dssp             TCEEEEECS
T ss_pred             EEEEEEEEC
Confidence            899999876

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=5e-06  Score=55.74  Aligned_cols=73  Identities=14%  Similarity=0.290  Sum_probs=47.1

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC-------------Ce------eEEEEccCCcC
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN-------------SD------EVLVLDRVQRE   69 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~-------------~~------~~l~i~~~~~~   69 (371)
                      +|+|.+.+.....+..|+.++|.|.+...+| ...|.|++||..+...             .+      +.|.|..-...
T Consensus         4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~   83 (108)
T d1ow0a2           4 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWK   83 (108)
T ss_dssp             CCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHH
T ss_pred             CCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhC
Confidence            5667766544244667889999997766555 4479999999877543             11      23334332222


Q ss_pred             CCeEEEEEEEcCC
Q psy14542         70 DAGMYQCHVSADD   82 (371)
Q Consensus        70 d~G~Y~C~~~~~~   82 (371)
                      ....|+|.+.+..
T Consensus        84 ~g~~ytC~V~H~s   96 (108)
T d1ow0a2          84 KGDTFSCMVGHEA   96 (108)
T ss_dssp             HTCCEEEEEECTT
T ss_pred             CCCEEEEEEEeCC
Confidence            3458999998754

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.81  E-value=3.5e-05  Score=51.84  Aligned_cols=66  Identities=21%  Similarity=0.310  Sum_probs=46.3

Q ss_pred             EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--CEE---EeeC---------------------CeeEEEEccC
Q psy14542         13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--GLV---LRRN---------------------SDEVLVLDRV   66 (371)
Q Consensus        13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~~~---~~~~---------------------~~~~l~i~~~   66 (371)
                      |...|.. ..+.+|++++|.|..... ....+.|||-  |+.   +...                     ....|.|..+
T Consensus         4 V~Q~P~~-~~~~~G~~vtL~C~~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~   81 (112)
T d1fo0b_           4 LEQNPRW-RLVPRGQAVNLRCILKNS-QYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVA   81 (112)
T ss_dssp             EEEECSE-EECCTTCCEEEEEEESCT-TCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEE
T ss_pred             EEeCCCe-EEECCCCCEEEEEEEecC-CCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecC
Confidence            5556766 789999999999965433 3356899982  211   1100                     3356888889


Q ss_pred             CcCCCeEEEEEEEc
Q psy14542         67 QREDAGMYQCHVSA   80 (371)
Q Consensus        67 ~~~d~G~Y~C~~~~   80 (371)
                      +.+|++.|.|.+..
T Consensus        82 ~~~dsa~Y~Ca~~~   95 (112)
T d1fo0b_          82 NMSQGRTLYCTCSA   95 (112)
T ss_dssp             SCCSCEEEEEEEES
T ss_pred             CccCCccEEEEEec
Confidence            99999999999754

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.80  E-value=0.00012  Score=47.89  Aligned_cols=72  Identities=15%  Similarity=0.239  Sum_probs=44.6

Q ss_pred             eecCCeEEEEEEeecCCC--CceEEEeCCcccccCCceE---EecceEEEe---ccCCCCCeEEEEEEEcCCCCceeEEE
Q psy14542        234 VKKDESVILPCSAQGNPL--PTIKWYKQDSPVEESDRIQ---RIGSSLSIS---HVEESDSGVWNCVANNSEGQDKMQLF  305 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~~---~~~~~l~i~---~~~~~d~G~Y~C~a~n~~g~~~~~~~  305 (371)
                      +..|+..+|.|.+.|+.+  ..+.|.+||..+.......   ..++++.+.   .+..++...|+|++.+..-.......
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~~l~~p~~~~   94 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEPDRYTAIAY   94 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECCCTTCCEEEEEEETTTTEEEEEE
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEecCCCCEEEEEEEeCCCCCCEEEE
Confidence            566888899999999543  4699999998764332211   122322221   23445666899999987554443333

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.79  E-value=3e-05  Score=52.12  Aligned_cols=64  Identities=22%  Similarity=0.439  Sum_probs=43.4

Q ss_pred             eecCCeEEEEEEeecCC---CCceEEEeCC--ccc------------ccCCceEE----ecceEEEeccCCCCCeEEEEE
Q psy14542        234 VKKDESVILPCSAQGNP---LPTIKWYKQD--SPV------------EESDRIQR----IGSSLSISHVEESDSGVWNCV  292 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p---~~~v~W~~~~--~~~------------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~  292 (371)
                      +.+|++++|.|...+..   ...+.|++..  ..+            ....++..    ....|.|.+++.+|+|.|.|.
T Consensus        12 ~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa   91 (112)
T d1lgva1          12 GSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADYYCS   91 (112)
T ss_dssp             ECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             ECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCEEEEEe
Confidence            89999999999976532   2358999732  111            11122221    224699999999999999998


Q ss_pred             EEcCC
Q psy14542        293 ANNSE  297 (371)
Q Consensus       293 a~n~~  297 (371)
                      +.+..
T Consensus        92 ~~~~~   96 (112)
T d1lgva1          92 SYDGS   96 (112)
T ss_dssp             EECSS
T ss_pred             eecCC
Confidence            86543

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.79  E-value=6e-05  Score=50.48  Aligned_cols=60  Identities=22%  Similarity=0.417  Sum_probs=40.9

Q ss_pred             EEEeccCcEEEEEEecCC---CCCCeeEEEeC--CE--E-Eee--------------C----------CeeEEEEccCCc
Q psy14542         21 VVVDVGHRIELHCRVSPK---RLSSAKAWLKD--GL--V-LRR--------------N----------SDEVLVLDRVQR   68 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~---~~~~~~~W~~~--~~--~-~~~--------------~----------~~~~l~i~~~~~   68 (371)
                      ..+.+|++++|.|++...   .....+.|+|.  |+  + +..              +          ....|.|.+++.
T Consensus        10 ~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~   89 (120)
T d2agjh1          10 TLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDP   89 (120)
T ss_dssp             SBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCG
T ss_pred             eeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeee
Confidence            468899999999975432   12245789871  11  1 100              0          346799999999


Q ss_pred             CCCeEEEEEEEc
Q psy14542         69 EDAGMYQCHVSA   80 (371)
Q Consensus        69 ~d~G~Y~C~~~~   80 (371)
                      +|++.|.|....
T Consensus        90 eDsAvYyCAr~~  101 (120)
T d2agjh1          90 VDTATYYCARTS  101 (120)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceEEeeEecC
Confidence            999999997543

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.79  E-value=1.9e-05  Score=52.66  Aligned_cols=63  Identities=22%  Similarity=0.428  Sum_probs=43.1

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCC--ccc------------ccCCceEE--e--cceEEEeccCCCCCeEEEEEEEc
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQD--SPV------------EESDRIQR--I--GSSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~~------------~~~~~~~~--~--~~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      +.+|++++|.|.........+.|++..  ..+            ....++..  .  ...|.|.+++.+|++.|.|.+..
T Consensus        12 ~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCA~~~   91 (109)
T d1w72l1          12 VAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYCQVWD   91 (109)
T ss_dssp             ECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             ECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEEEecC
Confidence            889999999998664444569999732  211            01122221  1  23689999999999999998864


Q ss_pred             C
Q psy14542        296 S  296 (371)
Q Consensus       296 ~  296 (371)
                      .
T Consensus        92 ~   92 (109)
T d1w72l1          92 S   92 (109)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.78  E-value=3.5e-05  Score=51.26  Aligned_cols=65  Identities=15%  Similarity=0.274  Sum_probs=43.6

Q ss_pred             cCCeEEEEEEeecC-CC-CceEEEeCCcccccCCc-----------eEEecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        236 KDESVILPCSAQGN-PL-PTIKWYKQDSPVEESDR-----------IQRIGSSLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       236 ~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~-----------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      .+..++|.|.+.|+ |. ..|+|.+||..+..+..           .....+.|.|..-.......|+|.+.+.....
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~~~   96 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS   96 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCCCC
Confidence            35678999999884 44 47999999886643211           01122356776666556778999999865543

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=6.3e-06  Score=54.52  Aligned_cols=74  Identities=20%  Similarity=0.313  Sum_probs=47.4

Q ss_pred             cccceEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC---------------CeeEEEEccCCcCCC
Q psy14542          8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN---------------SDEVLVLDRVQREDA   71 (371)
Q Consensus         8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~---------------~~~~l~i~~~~~~d~   71 (371)
                      ..+|+|.+.|.. .....++.++|.|.+....| ...+.|++||..+...               ..+.|.|........
T Consensus         3 ~~~P~V~~~~ps-~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~   81 (102)
T d1rzfl2           3 KAAPSVTLFPPS-SEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSH   81 (102)
T ss_dssp             CBCCEEEEECCC-HHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHS
T ss_pred             CCCCEEEEECCC-HHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCC
Confidence            346778877765 23335778999997665455 4579999999877654               123344433322224


Q ss_pred             eEEEEEEEcCC
Q psy14542         72 GMYQCHVSADD   82 (371)
Q Consensus        72 G~Y~C~~~~~~   82 (371)
                      ..|+|.+.+..
T Consensus        82 ~~ytC~V~H~~   92 (102)
T d1rzfl2          82 RSYSCQVTHEG   92 (102)
T ss_dssp             SCEEEEEEETT
T ss_pred             CEEEEEEEECC
Confidence            47999998754

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=1e-05  Score=54.77  Aligned_cols=81  Identities=17%  Similarity=0.222  Sum_probs=45.2

Q ss_pred             eecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEc-ccCcCCCeeEEEEEeCCceeEec-----cceEEEEE
Q psy14542        108 VDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLD-RVQREDAGMYQCHIEDGKYHMLS-----SGELIIHQ  180 (371)
Q Consensus       108 ~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~i~~  180 (371)
                      +.+|++++|.|...+. .....+.|+|...   ......+... .......+.+     .+++.+..     ...|+|.+
T Consensus        11 v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~---~~~~~~l~~~~~~~~~~~~~~-----~~R~~~~~~~~~~~~~Lti~~   82 (113)
T d1smoa_          11 LKEGQTLDVKCDYTLEKFASSQKAWQIIRD---GEMPKTLACTERPSKNSHPVQ-----VGRIILEDYHDHGLLRVRMVN   82 (113)
T ss_dssp             CCTTCCEEEEEECCHHHHTTSCEEEEEECT---TSCCEEEEECCSSCCSSCCEE-----ETTEEEEEETTTTEEEEEECS
T ss_pred             EccCCCEEEEEEeCCCCCCCCEEEEEECCC---CCCCEEEEecCCCCceEcceE-----CCeEEEEEECCCCEEEEEEcc
Confidence            3789999999987532 1225688997321   1111112111 1111111111     22333321     13689999


Q ss_pred             eecCCccceeEEEeecc
Q psy14542        181 VDESDRYRSYQCRGVNK  197 (371)
Q Consensus       181 ~~~~d~~g~y~C~~~~~  197 (371)
                      ++.+| +|.|.|.+...
T Consensus        83 l~~~D-sg~Y~Cav~~~   98 (113)
T d1smoa_          83 LQVED-SGLYQCVIYQP   98 (113)
T ss_dssp             CCGGG-CEEEEEEECCT
T ss_pred             CCccc-CceEEEEEECC
Confidence            99999 99999988654

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.76  E-value=4.9e-05  Score=50.33  Aligned_cols=59  Identities=22%  Similarity=0.437  Sum_probs=40.8

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEe--CCEE------EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLK--DGLV------LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~--~~~~------~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|++++|.|+++.. .....+.|+|  -|+.      +...                      ....|.|.+++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~e   89 (115)
T d1f3dh1          10 ELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFE   89 (115)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcC
Confidence            578999999999976532 2334588887  1111      1100                      3456999999999


Q ss_pred             CCeEEEEEEE
Q psy14542         70 DAGMYQCHVS   79 (371)
Q Consensus        70 d~G~Y~C~~~   79 (371)
                      |++.|.|...
T Consensus        90 DtAvYYCAr~   99 (115)
T d1f3dh1          90 DSAVYYCAND   99 (115)
T ss_dssp             GCEEEEEEEC
T ss_pred             CcEEEEEecc
Confidence            9999999653

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.76  E-value=4.8e-05  Score=50.93  Aligned_cols=67  Identities=24%  Similarity=0.388  Sum_probs=43.3

Q ss_pred             eeeeeeeecCCeEEEEEEeecCC-----CCceEEEeCC--ccc------------ccCCceEE----ecceEEEeccCCC
Q psy14542        228 KHRILNVKKDESVILPCSAQGNP-----LPTIKWYKQD--SPV------------EESDRIQR----IGSSLSISHVEES  284 (371)
Q Consensus       228 ~~~~~~~~~g~~~~l~C~~~~~p-----~~~v~W~~~~--~~~------------~~~~~~~~----~~~~l~i~~~~~~  284 (371)
                      |.... +.+|++++|.|...+..     ...+.|++..  ..+            ....++..    ....|.|.++..+
T Consensus         8 P~sls-~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~e   86 (112)
T d1ncwl1           8 PKTIS-VTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAE   86 (112)
T ss_dssp             CSEEE-EETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CCEEE-ECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccC
Confidence            33444 89999999999865422     2348898632  211            11123332    1136999999999


Q ss_pred             CCeEEEEEEEc
Q psy14542        285 DSGVWNCVANN  295 (371)
Q Consensus       285 d~G~Y~C~a~n  295 (371)
                      |++.|.|...+
T Consensus        87 DsAvYYC~~~~   97 (112)
T d1ncwl1          87 DLGVYYCWQGT   97 (112)
T ss_dssp             GCEEEEEEECS
T ss_pred             cCEeEEEEcCC
Confidence            99999996543

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.76  E-value=7.3e-05  Score=50.05  Aligned_cols=63  Identities=21%  Similarity=0.407  Sum_probs=43.0

Q ss_pred             eecCCeEEEEEEeecCC--CCceEEEeCC--ccc------------ccCCceEE----ecceEEEeccCCCCCeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNP--LPTIKWYKQD--SPV------------EESDRIQR----IGSSLSISHVEESDSGVWNCVA  293 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~~------------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a  293 (371)
                      +.+|++++|.|...+..  ...+.|++..  ..+            ....++..    ....|.|.+++.+|+|.|.|.+
T Consensus        12 v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~   91 (111)
T d1rzfl1          12 AAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGT   91 (111)
T ss_dssp             ECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEE
T ss_pred             eCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcceEEee
Confidence            89999999999876532  3459999732  110            01122221    1247999999999999999987


Q ss_pred             EcC
Q psy14542        294 NNS  296 (371)
Q Consensus       294 ~n~  296 (371)
                      ...
T Consensus        92 ~~~   94 (111)
T d1rzfl1          92 WDS   94 (111)
T ss_dssp             EET
T ss_pred             cCC
Confidence            643

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=4.3e-05  Score=51.95  Aligned_cols=60  Identities=15%  Similarity=0.290  Sum_probs=39.4

Q ss_pred             EEEeccCcEEEEEEecCCCC-CC-eeEEEeC--CE--EEee---C--------------------CeeEEEEccCCcCCC
Q psy14542         21 VVVDVGHRIELHCRVSPKRL-SS-AKAWLKD--GL--VLRR---N--------------------SDEVLVLDRVQREDA   71 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~-~~-~~~W~~~--~~--~~~~---~--------------------~~~~l~i~~~~~~d~   71 (371)
                      ..+.+|++++|.|....... .. .+.|++.  +.  .+..   .                    ...+|.|.+++.+|+
T Consensus        10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   89 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQT   89 (118)
T ss_dssp             EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGC
T ss_pred             cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccC
Confidence            45778999999997653322 22 2345541  11  1100   0                    456899999999999


Q ss_pred             eEEEEEEEc
Q psy14542         72 GMYQCHVSA   80 (371)
Q Consensus        72 G~Y~C~~~~   80 (371)
                      |.|.|.+..
T Consensus        90 avYyCa~~~   98 (118)
T d1yjdc1          90 DIYFCKIEV   98 (118)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEec
Confidence            999998753

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.76  E-value=2e-05  Score=51.19  Aligned_cols=55  Identities=18%  Similarity=0.245  Sum_probs=37.5

Q ss_pred             ccCcEEEEEEecCCCCCC-eeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542         25 VGHRIELHCRVSPKRLSS-AKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGMYQCHVSADD   82 (371)
Q Consensus        25 ~G~~v~l~C~~~~~~~~~-~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~Y~C~~~~~~   82 (371)
                      .++.++|.|.+...+|.. .+.|++|+..+...              ....|.+.   .+|...|+|.+.+..
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~s   84 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVA---DGEAAGLSCRVKHSS   84 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEE---GGGCTTEEEEEEEGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEe---CccCCEEEEEEEeCC
Confidence            567899999877777755 79999998866433              12234443   345557888887654

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.73  E-value=7.2e-05  Score=49.92  Aligned_cols=59  Identities=20%  Similarity=0.435  Sum_probs=41.3

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEe--CCE--E----EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLK--DGL--V----LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~--~~~--~----~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|++++|.|.++.. .....+.|+|  -|+  +    +...                      ....|.|.+++.+
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~e   89 (120)
T d1pg7x1          10 ELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSN   89 (120)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCC
Confidence            578999999999976532 2234578887  111  1    1100                      4457999999999


Q ss_pred             CCeEEEEEEE
Q psy14542         70 DAGMYQCHVS   79 (371)
Q Consensus        70 d~G~Y~C~~~   79 (371)
                      |++.|.|...
T Consensus        90 DtA~YYCAr~   99 (120)
T d1pg7x1          90 DSAVYYCARE   99 (120)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEeeec
Confidence            9999999865

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.73  E-value=8.4e-05  Score=49.53  Aligned_cols=60  Identities=25%  Similarity=0.432  Sum_probs=41.4

Q ss_pred             EEEeccCcEEEEEEecCCC---CCCeeEEEeC--C--EE----EeeC---------------------CeeEEEEccCCc
Q psy14542         21 VVVDVGHRIELHCRVSPKR---LSSAKAWLKD--G--LV----LRRN---------------------SDEVLVLDRVQR   68 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~---~~~~~~W~~~--~--~~----~~~~---------------------~~~~l~i~~~~~   68 (371)
                      ..+.+|++++|.|.++...   ....+.|+|-  |  .+    +...                     ....|.|.+++.
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~   89 (120)
T d1ai1h1          10 AVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTN   89 (120)
T ss_dssp             SEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCG
T ss_pred             ceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeec
Confidence            5789999999999765322   2234789871  1  11    1111                     446799999999


Q ss_pred             CCCeEEEEEEEc
Q psy14542         69 EDAGMYQCHVSA   80 (371)
Q Consensus        69 ~d~G~Y~C~~~~   80 (371)
                      +|++.|.|....
T Consensus        90 eDtAvYYCAr~~  101 (120)
T d1ai1h1          90 EDTAMYYCSREN  101 (120)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             cceeEEEEEecC
Confidence            999999997543

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.73  E-value=5.1e-05  Score=50.56  Aligned_cols=62  Identities=18%  Similarity=0.369  Sum_probs=42.3

Q ss_pred             eecCCeEEEEEEeecCCC---CceEEEeC--Cccc------------ccCCceEE----ecceEEEeccCCCCCeEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPL---PTIKWYKQ--DSPV------------EESDRIQR----IGSSLSISHVEESDSGVWNCV  292 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~---~~v~W~~~--~~~~------------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~  292 (371)
                      +.+|++++|.|...+...   ..+.|++.  |..+            ....++..    ....|.|.++..+|+|.|.|.
T Consensus        12 vs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~YyCa   91 (110)
T d1oaql_          12 TSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIYFCA   91 (110)
T ss_dssp             ECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred             eCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeEEEE
Confidence            899999999999864332   23899972  2211            01123321    224699999999999999998


Q ss_pred             EEc
Q psy14542        293 ANN  295 (371)
Q Consensus       293 a~n  295 (371)
                      +..
T Consensus        92 ~~~   94 (110)
T d1oaql_          92 LWY   94 (110)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            764

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.72  E-value=0.00017  Score=47.89  Aligned_cols=60  Identities=23%  Similarity=0.476  Sum_probs=42.1

Q ss_pred             EEEeccCcEEEEEEecCCC-CCCeeEEEeC--C--EE-E---eeC---------------------CeeEEEEccCCcCC
Q psy14542         21 VVVDVGHRIELHCRVSPKR-LSSAKAWLKD--G--LV-L---RRN---------------------SDEVLVLDRVQRED   70 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~--~--~~-~---~~~---------------------~~~~l~i~~~~~~d   70 (371)
                      -.+.+|+++.|.|+++... ....+.|+|.  |  .+ +   ...                     ....|.|.+++.+|
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eD   88 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDD   88 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCC
Confidence            5789999999999765432 2345888872  1  11 1   000                     44579999999999


Q ss_pred             CeEEEEEEEc
Q psy14542         71 AGMYQCHVSA   80 (371)
Q Consensus        71 ~G~Y~C~~~~   80 (371)
                      ++.|.|....
T Consensus        89 tA~YYCAr~~   98 (119)
T d1kxvc_          89 TAMYYCKPSL   98 (119)
T ss_dssp             CEEEEEEEEE
T ss_pred             cceEeeeecc
Confidence            9999997653

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.72  E-value=0.00011  Score=49.20  Aligned_cols=86  Identities=17%  Similarity=0.201  Sum_probs=47.3

Q ss_pred             CceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeec
Q psy14542        104 NQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDE  183 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~  183 (371)
                      +...+.+|++++|.|...+......+.||+...  .......+..... ..+...........+    ....|.|.++..
T Consensus         6 ~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~p--g~~~~~i~~~~~~-~~~~~~~~~~~~~~~----~~~~L~i~~~~~   78 (112)
T d1kgcd1           6 NSMESNEEEPVHLPCNHSTISGTDYIHWYRQLP--SQGPEYVIHGLTS-NVNNRMASLAIAEDR----KSSTLILHRATL   78 (112)
T ss_dssp             SEEEEETTSCEEEEEEESCCCTTCCEEEEEECT--TSCCEEEEEESSS-SEECSSEEEEECTTS----SEEEEEESSCCG
T ss_pred             CEEEECCCCCEEEEEEEeCCCccccEEEEEECC--CCCcceeeeecce-eccccccceeecccC----CeeEEEEeeccc
Confidence            334458999999999986544324589998321  0111112211111 111111111111111    124699999999


Q ss_pred             CCccceeEEEeecc
Q psy14542        184 SDRYRSYQCRGVNK  197 (371)
Q Consensus       184 ~d~~g~y~C~~~~~  197 (371)
                      +| +|.|.|.+...
T Consensus        79 ~D-sa~YyCa~~~~   91 (112)
T d1kgcd1          79 RD-AAVYYCILPLA   91 (112)
T ss_dssp             GG-CEEEEEECCCC
T ss_pred             cc-ceeEeeeEecC
Confidence            99 99999987543

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.72  E-value=6.1e-05  Score=50.38  Aligned_cols=66  Identities=20%  Similarity=0.373  Sum_probs=43.5

Q ss_pred             eeeeeeeecCCeEEEEEEeecCCCCceEEEeC--Ccccc---------------cCCceE-----EecceEEEeccCCCC
Q psy14542        228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQ--DSPVE---------------ESDRIQ-----RIGSSLSISHVEESD  285 (371)
Q Consensus       228 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~~---------------~~~~~~-----~~~~~l~i~~~~~~d  285 (371)
                      |.... +.+|++++|.|...+ ....+.|++.  |..+.               ...++.     .....|.|.++..+|
T Consensus         8 P~~~~-~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   85 (110)
T d2aq2a1           8 PRNKV-AVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQ   85 (110)
T ss_dssp             CSEEE-ECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGG
T ss_pred             CCeEE-EcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhh
Confidence            33344 899999999998754 3457999983  22110               001111     112368999999999


Q ss_pred             CeEEEEEEEc
Q psy14542        286 SGVWNCVANN  295 (371)
Q Consensus       286 ~G~Y~C~a~n  295 (371)
                      +|.|.|.+..
T Consensus        86 sa~YyCa~~~   95 (110)
T d2aq2a1          86 TSVYFCASGG   95 (110)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEeeCC
Confidence            9999998763

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.72  E-value=5.9e-05  Score=50.45  Aligned_cols=62  Identities=23%  Similarity=0.470  Sum_probs=43.1

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeC--Ccccc------------cCCceEE------ecceEEEeccCCCCCeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQ--DSPVE------------ESDRIQR------IGSSLSISHVEESDSGVWNCVA  293 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~~------------~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~a  293 (371)
                      +.+|+.++|.|.........+.|++.  |+.+.            ...++..      ....|.|.++..+|+|.|.|.+
T Consensus        12 ~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~YyCA~   91 (110)
T d1ac6a_          12 LSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVYYCAL   91 (110)
T ss_dssp             EETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCEEEEEEE
T ss_pred             ECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCcccceee
Confidence            89999999999876554456999973  22110            1122221      1236999999999999999987


Q ss_pred             Ec
Q psy14542        294 NN  295 (371)
Q Consensus       294 ~n  295 (371)
                      ..
T Consensus        92 ~~   93 (110)
T d1ac6a_          92 SG   93 (110)
T ss_dssp             EE
T ss_pred             cC
Confidence            64

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.71  E-value=4.3e-05  Score=49.75  Aligned_cols=59  Identities=27%  Similarity=0.475  Sum_probs=41.1

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEe--CC--EE----Ee-----------eC-------------CeeEEEEccCC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLK--DG--LV----LR-----------RN-------------SDEVLVLDRVQ   67 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~--~~--~~----~~-----------~~-------------~~~~l~i~~~~   67 (371)
                      ..+.+|+++.|.|.++.. .....+.|+|  .|  .+    +.           ..             ....|.|++++
T Consensus        10 ~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL~   89 (109)
T d2ck0h1          10 GLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNLK   89 (109)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCCC
Confidence            579999999999976532 1233588877  11  11    11           00             44579999999


Q ss_pred             cCCCeEEEEEEE
Q psy14542         68 REDAGMYQCHVS   79 (371)
Q Consensus        68 ~~d~G~Y~C~~~   79 (371)
                      .+|++.|.|.-.
T Consensus        90 ~eDTAvYYCAr~  101 (109)
T d2ck0h1          90 TEDTGIYYCVRG  101 (109)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             HhHCEEEEEEEc
Confidence            999999999854

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=8.1e-05  Score=49.11  Aligned_cols=72  Identities=24%  Similarity=0.285  Sum_probs=46.8

Q ss_pred             ecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCcc
Q psy14542        109 DVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRY  187 (371)
Q Consensus       109 ~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~  187 (371)
                      ..+..++|.|.+.++ |....++|.++|..+.........              ...++.+...  +.|.|..-.... .
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~--------------~~~~~~y~~~--S~L~v~~~~w~~-~   81 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTAST--------------TQEGELASTQ--SELTLSQKHWLS-D   81 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEE--------------EEETTEEEEE--EEEEEEHHHHHT-T
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeE--------------eCCCCeEEEE--EEEEECHHHcCC-C
Confidence            345679999999885 555789999999987654221111              1112333332  567777655455 6


Q ss_pred             ceeEEEeecc
Q psy14542        188 RSYQCRGVNK  197 (371)
Q Consensus       188 g~y~C~~~~~  197 (371)
                      ..|+|.+.+.
T Consensus        82 ~~ytC~V~H~   91 (104)
T d1o0va1          82 RTYTCQVTYQ   91 (104)
T ss_dssp             CCEEEEEEET
T ss_pred             CEEEEEEEEC
Confidence            6799999987

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.70  E-value=0.00014  Score=48.06  Aligned_cols=61  Identities=21%  Similarity=0.452  Sum_probs=42.5

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEeC----CEE----EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKD----GLV----LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~----~~~----~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|+++.. .....+.|+|-    +-+    +...                      ....|.|++++.+
T Consensus        10 ~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~e   89 (117)
T d1iqdb1          10 EVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSD   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcC
Confidence            578999999999976532 12344788871    111    1111                      4457999999999


Q ss_pred             CCeEEEEEEEcC
Q psy14542         70 DAGMYQCHVSAD   81 (371)
Q Consensus        70 d~G~Y~C~~~~~   81 (371)
                      |++.|.|.....
T Consensus        90 DtAvYYCA~~~~  101 (117)
T d1iqdb1          90 DTAVYYCAVPDP  101 (117)
T ss_dssp             GCEEEEEEECSS
T ss_pred             cceEEEEeEcCC
Confidence            999999987643

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=0.00012  Score=48.37  Aligned_cols=71  Identities=17%  Similarity=0.235  Sum_probs=42.9

Q ss_pred             eecCCeEEEEEEeecC-CC-CceEEEeCCcccccCC----ceE-----EecceEEEeccCCC--CCeEEEEEEEcCCCCc
Q psy14542        234 VKKDESVILPCSAQGN-PL-PTIKWYKQDSPVEESD----RIQ-----RIGSSLSISHVEES--DSGVWNCVANNSEGQD  300 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~----~~~-----~~~~~l~i~~~~~~--d~G~Y~C~a~n~~g~~  300 (371)
                      ....+.++|.|.+.|+ |. ..|+|.++|.......    ...     ...+.|.|......  ....|+|.+.+..+..
T Consensus        18 ~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~~   97 (105)
T d1dn0b2          18 PSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNK   97 (105)
T ss_dssp             ---CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCE
T ss_pred             cCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCCE
Confidence            3446779999999984 43 5799999987554321    111     11234566554433  2247999999887765


Q ss_pred             eeEE
Q psy14542        301 KMQL  304 (371)
Q Consensus       301 ~~~~  304 (371)
                      ...+
T Consensus        98 ~~~v  101 (105)
T d1dn0b2          98 EKNV  101 (105)
T ss_dssp             EEEE
T ss_pred             EeEE
Confidence            5443

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.70  E-value=0.00011  Score=49.25  Aligned_cols=62  Identities=23%  Similarity=0.473  Sum_probs=42.5

Q ss_pred             eecCCeEEEEEEeecCCC--CceEEEeC--Cccc------------ccCCceEE--e----cceEEEeccCCCCCeEEEE
Q psy14542        234 VKKDESVILPCSAQGNPL--PTIKWYKQ--DSPV------------EESDRIQR--I----GSSLSISHVEESDSGVWNC  291 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~--~~v~W~~~--~~~~------------~~~~~~~~--~----~~~l~i~~~~~~d~G~Y~C  291 (371)
                      +.+|++++|.|...+...  .-+.|++.  ++.+            ...+++..  .    ...|.|.+++.+|++.|.|
T Consensus        12 v~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyC   91 (111)
T d1cd0a_          12 ESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEADYYC   91 (111)
T ss_dssp             ECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             ECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccCcEEEE
Confidence            899999999999865432  34899973  2211            01123321  1    2369999999999999999


Q ss_pred             EEEc
Q psy14542        292 VANN  295 (371)
Q Consensus       292 ~a~n  295 (371)
                      .+..
T Consensus        92 A~~~   95 (111)
T d1cd0a_          92 QSYD   95 (111)
T ss_dssp             EEEE
T ss_pred             eecc
Confidence            8654

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.70  E-value=9.3e-05  Score=49.61  Aligned_cols=66  Identities=23%  Similarity=0.433  Sum_probs=43.6

Q ss_pred             eeeeeeecCCeEEEEEEeecC-----CCCceEEEeCC--ccc------------ccCCceEE----ecceEEEeccCCCC
Q psy14542        229 HRILNVKKDESVILPCSAQGN-----PLPTIKWYKQD--SPV------------EESDRIQR----IGSSLSISHVEESD  285 (371)
Q Consensus       229 ~~~~~~~~g~~~~l~C~~~~~-----p~~~v~W~~~~--~~~------------~~~~~~~~----~~~~l~i~~~~~~d  285 (371)
                      .... +.+|++++|.|...+.     ....+.|++..  ..+            ....++..    ....|.|.++..+|
T Consensus        10 ~s~~-~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~D   88 (113)
T d1n4xl_          10 LYLP-VSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAED   88 (113)
T ss_dssp             SEEE-ECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGGG
T ss_pred             CEEE-ECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCccc
Confidence            3344 8999999999997542     22458999732  111            11123331    12379999999999


Q ss_pred             CeEEEEEEEc
Q psy14542        286 SGVWNCVANN  295 (371)
Q Consensus       286 ~G~Y~C~a~n  295 (371)
                      +|.|.|...+
T Consensus        89 savYyCa~~~   98 (113)
T d1n4xl_          89 LGIYYCFQGS   98 (113)
T ss_dssp             CEEEEEEECS
T ss_pred             CEEEEEEECC
Confidence            9999996553

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.69  E-value=6e-05  Score=50.62  Aligned_cols=62  Identities=24%  Similarity=0.463  Sum_probs=41.3

Q ss_pred             eecCCeEEEEEEeecC------CCCceEEEeC--Cccc------------ccCCceEE--e--cceEEEeccCCCCCeEE
Q psy14542        234 VKKDESVILPCSAQGN------PLPTIKWYKQ--DSPV------------EESDRIQR--I--GSSLSISHVEESDSGVW  289 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~------p~~~v~W~~~--~~~~------------~~~~~~~~--~--~~~l~i~~~~~~d~G~Y  289 (371)
                      +.+|++++|.|...+.      ....+.|++.  |..+            ....++..  .  ...|.|.++..+|+|.|
T Consensus        13 ~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~~Dsa~Y   92 (113)
T d1q9ra1          13 VSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQAEDLAVY   92 (113)
T ss_dssp             EETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             ECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccccCCCeEE
Confidence            8999999999986532      1134899973  2211            11122221  1  13699999999999999


Q ss_pred             EEEEEc
Q psy14542        290 NCVANN  295 (371)
Q Consensus       290 ~C~a~n  295 (371)
                      .|.+..
T Consensus        93 yCA~~~   98 (113)
T d1q9ra1          93 YCKQSY   98 (113)
T ss_dssp             EEEECS
T ss_pred             EecccC
Confidence            998653

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=7.8e-05  Score=49.54  Aligned_cols=65  Identities=14%  Similarity=0.307  Sum_probs=44.0

Q ss_pred             cCCeEEEEEEeecC-CC-CceEEEeCCcccccCCce-----------EEecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        236 KDESVILPCSAQGN-PL-PTIKWYKQDSPVEESDRI-----------QRIGSSLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       236 ~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~~-----------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      .++.++|.|.+.++ |. ..|+|.+||..+......           ....+.|.|..-.......|+|++.+.....
T Consensus        19 ~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~~~   96 (107)
T d1c5cl2          19 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS   96 (107)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             cCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCCCC
Confidence            45779999999984 44 479999999865433211           1122357776666566669999999866543

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.69  E-value=0.00011  Score=49.75  Aligned_cols=62  Identities=16%  Similarity=0.248  Sum_probs=40.7

Q ss_pred             eecCCeEEEEEEeecCCCC---ceEEEeC--Ccccc--------------cCCce-E--E--ecceEEEeccCCCCCeEE
Q psy14542        234 VKKDESVILPCSAQGNPLP---TIKWYKQ--DSPVE--------------ESDRI-Q--R--IGSSLSISHVEESDSGVW  289 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~---~v~W~~~--~~~~~--------------~~~~~-~--~--~~~~l~i~~~~~~d~G~Y  289 (371)
                      +..|++++|.|........   .+.|++.  |+.+.              ...+. .  .  ....|.|.++..+|+|.|
T Consensus        11 ~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   90 (117)
T d1dqta_          11 ASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTGLY   90 (117)
T ss_dssp             CCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             EcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccCEeE
Confidence            8889999999997543222   3789973  22110              00111 1  1  123699999999999999


Q ss_pred             EEEEEc
Q psy14542        290 NCVANN  295 (371)
Q Consensus       290 ~C~a~n  295 (371)
                      .|.+..
T Consensus        91 yCa~~~   96 (117)
T d1dqta_          91 LCKVEL   96 (117)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            998864

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.69  E-value=8.9e-05  Score=49.05  Aligned_cols=60  Identities=30%  Similarity=0.491  Sum_probs=42.1

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEe--CC--EE----EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLK--DG--LV----LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~--~~--~~----~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|+++.. .....+.|+|  .|  .+    +...                      ....|.|.+++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~e   89 (118)
T d1ct8b1          10 VLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCCC
Confidence            689999999999976542 2234578876  11  11    1111                      4467999999999


Q ss_pred             CCeEEEEEEEc
Q psy14542         70 DAGMYQCHVSA   80 (371)
Q Consensus        70 d~G~Y~C~~~~   80 (371)
                      |++.|.|.-..
T Consensus        90 DtAvYYCAr~~  100 (118)
T d1ct8b1          90 DSAIYYCARYR  100 (118)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceEEEEeeec
Confidence            99999997643

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.68  E-value=7.5e-05  Score=49.40  Aligned_cols=59  Identities=24%  Similarity=0.431  Sum_probs=40.9

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEe--CCEEE------eeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLK--DGLVL------RRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~--~~~~~------~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|+++.. .....+.|+|  -|+-+      ...                      ....|.|.+++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~e   89 (117)
T d1mfah1          10 VVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTSE   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCCC
Confidence            678999999999976532 2234577876  12111      100                      3457999999999


Q ss_pred             CCeEEEEEEE
Q psy14542         70 DAGMYQCHVS   79 (371)
Q Consensus        70 d~G~Y~C~~~   79 (371)
                      |++.|.|.-.
T Consensus        90 DtAvYYCAr~   99 (117)
T d1mfah1          90 DSAVYYCTRG   99 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEecc
Confidence            9999999753

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.68  E-value=0.00013  Score=48.21  Aligned_cols=61  Identities=21%  Similarity=0.304  Sum_probs=42.7

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEeC--CE--E-E---e--------eC-------------CeeEEEEccCCcCC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKD--GL--V-L---R--------RN-------------SDEVLVLDRVQRED   70 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~--~~--~-~---~--------~~-------------~~~~l~i~~~~~~d   70 (371)
                      ..+.+|++++|.|+++.. .....+.|+|-  |+  + +   .        ..             ....|.|++++.+|
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eD   89 (116)
T d7fabh1          10 GLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAAD   89 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccccccc
Confidence            578999999999976532 23445888871  11  0 0   0        00             45679999999999


Q ss_pred             CeEEEEEEEcC
Q psy14542         71 AGMYQCHVSAD   81 (371)
Q Consensus        71 ~G~Y~C~~~~~   81 (371)
                      ++.|.|.....
T Consensus        90 tAvYyCAr~~~  100 (116)
T d7fabh1          90 TAVYYCARNLI  100 (116)
T ss_dssp             CEEEEEEEECS
T ss_pred             ceEEEeeeecC
Confidence            99999986543

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.68  E-value=7.1e-05  Score=49.18  Aligned_cols=64  Identities=23%  Similarity=0.444  Sum_probs=43.1

Q ss_pred             eCCCcEEEeccCcEEEEEEecCC-CCCCeeEEEe--CC--EE----EeeC----------------------CeeEEEEc
Q psy14542         16 SPSGQVVVDVGHRIELHCRVSPK-RLSSAKAWLK--DG--LV----LRRN----------------------SDEVLVLD   64 (371)
Q Consensus        16 ~p~~~~~~~~G~~v~l~C~~~~~-~~~~~~~W~~--~~--~~----~~~~----------------------~~~~l~i~   64 (371)
                      ..+.+..+.+|+++.|.|+++.. .....+.|+|  -|  .+    +...                      ....|.+.
T Consensus         5 ~esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~   84 (116)
T d1mjuh1           5 QQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS   84 (116)
T ss_dssp             ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEeccc
Confidence            33444789999999999976532 2234578877  11  11    1111                      44578899


Q ss_pred             cCCcCCCeEEEEEEE
Q psy14542         65 RVQREDAGMYQCHVS   79 (371)
Q Consensus        65 ~~~~~d~G~Y~C~~~   79 (371)
                      +++.+|++.|.|.-.
T Consensus        85 sL~~eDtAvYYCAr~   99 (116)
T d1mjuh1          85 SLTSDDSAVYYCANK   99 (116)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCCceEEEEccc
Confidence            999999999999753

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.67  E-value=5.6e-05  Score=49.83  Aligned_cols=60  Identities=20%  Similarity=0.402  Sum_probs=41.9

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEeC--CE--E----EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKD--GL--V----LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~--~~--~----~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|+++.. .....+.|+|.  |+  +    +...                      ....|.+.+++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~e   89 (117)
T d1jpth1          10 GLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAE   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCC
Confidence            679999999999976532 22445888761  11  1    1100                      4467999999999


Q ss_pred             CCeEEEEEEEc
Q psy14542         70 DAGMYQCHVSA   80 (371)
Q Consensus        70 d~G~Y~C~~~~   80 (371)
                      |++.|.|....
T Consensus        90 DTAvYYCAr~~  100 (117)
T d1jpth1          90 DTAVYYCARDT  100 (117)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CceEEEEeecC
Confidence            99999997543

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.67  E-value=5.9e-05  Score=50.54  Aligned_cols=61  Identities=30%  Similarity=0.506  Sum_probs=40.9

Q ss_pred             eecCCeEEEEEEeecCC-----CCceEEEeCC--ccc------------ccCCceEE----ecceEEEeccCCCCCeEEE
Q psy14542        234 VKKDESVILPCSAQGNP-----LPTIKWYKQD--SPV------------EESDRIQR----IGSSLSISHVEESDSGVWN  290 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p-----~~~v~W~~~~--~~~------------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~  290 (371)
                      +.+|++++|.|...+..     ...+.|++..  ..+            ....++..    ....|.|.++..+|++.|.
T Consensus        13 v~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~DsAvYy   92 (112)
T d1mjul1          13 VTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDVGVYY   92 (112)
T ss_dssp             ECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGGCEEEE
T ss_pred             ECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccCCceEE
Confidence            88999999999876531     3458998632  211            01122321    1136999999999999999


Q ss_pred             EEEE
Q psy14542        291 CVAN  294 (371)
Q Consensus       291 C~a~  294 (371)
                      |...
T Consensus        93 Ca~~   96 (112)
T d1mjul1          93 CLQH   96 (112)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9643

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.00018  Score=46.37  Aligned_cols=71  Identities=20%  Similarity=0.326  Sum_probs=45.7

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCC-CeeEEEeCCEEEeeC--------Ce---eEEEEccCCcCCCeEEEEE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRN--------SD---EVLVLDRVQREDAGMYQCH   77 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~~~--------~~---~~l~i~~~~~~d~G~Y~C~   77 (371)
                      +|++.+...    ...|+.++|.|.+...+|. ..+.|++||..+...        .+   .......+...+...|+|.
T Consensus         3 PP~V~v~~~----~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~   78 (94)
T d1t7va1           3 PPSVVVTSH----QAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCH   78 (94)
T ss_dssp             CCEEEEEEE----ECTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEE
T ss_pred             CCEeEEecc----CCCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEE
Confidence            466666432    2357899999977776665 579999999876544        11   1122223445566689999


Q ss_pred             EEcCCCC
Q psy14542         78 VSADDDS   84 (371)
Q Consensus        78 ~~~~~~~   84 (371)
                      +....-.
T Consensus        79 V~H~sl~   85 (94)
T d1t7va1          79 VQHSSLA   85 (94)
T ss_dssp             EEETTCS
T ss_pred             EEECCCC
Confidence            9876543

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.00012  Score=47.31  Aligned_cols=71  Identities=17%  Similarity=0.240  Sum_probs=43.9

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC---------Ce---eEEEEccCCcCCCeEEE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN---------SD---EVLVLDRVQREDAGMYQ   75 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~---------~~---~~l~i~~~~~~d~G~Y~   75 (371)
                      .+|++.+....    ..++.++|.|.+...+| ...++|++||+.+...         .+   .......+...+...|+
T Consensus         2 ~PP~v~v~~~~----~~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~yt   77 (95)
T d1k5na1           2 DPPKTHVTHHP----ISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYT   77 (95)
T ss_dssp             BCCEEEEEEEE----EETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEE
T ss_pred             cCCccEEEecc----CCCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEE
Confidence            35666664322    24568999997776655 4569999999877654         11   11112233445556899


Q ss_pred             EEEEcCCC
Q psy14542         76 CHVSADDD   83 (371)
Q Consensus        76 C~~~~~~~   83 (371)
                      |++....-
T Consensus        78 C~V~H~~L   85 (95)
T d1k5na1          78 CHVQHEGL   85 (95)
T ss_dssp             EEEECTTC
T ss_pred             EEEEECcC
Confidence            99987543

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.67  E-value=0.0001  Score=48.55  Aligned_cols=60  Identities=20%  Similarity=0.379  Sum_probs=41.9

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEeC--CE---EE---e--------eC-------------CeeEEEEccCCcCC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKD--GL---VL---R--------RN-------------SDEVLVLDRVQRED   70 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~--~~---~~---~--------~~-------------~~~~l~i~~~~~~d   70 (371)
                      ..+.+|+++.|.|.++.. .....+.|+|.  |+   -+   .        ..             ....|.|++++.+|
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eD   89 (116)
T d1a2yb_          10 GLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDD   89 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeecc
Confidence            478999999999976542 22345788871  11   01   0        00             45679999999999


Q ss_pred             CeEEEEEEEc
Q psy14542         71 AGMYQCHVSA   80 (371)
Q Consensus        71 ~G~Y~C~~~~   80 (371)
                      ++.|.|.-..
T Consensus        90 TAvYYCAr~~   99 (116)
T d1a2yb_          90 TARYYCARER   99 (116)
T ss_dssp             CEEEEEEEES
T ss_pred             ceEEEEEEeC
Confidence            9999998643

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.67  E-value=8.8e-05  Score=49.07  Aligned_cols=59  Identities=27%  Similarity=0.472  Sum_probs=41.7

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEeC--CE--E----EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKD--GL--V----LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~--~~--~----~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|.++.. .....+.|+|-  |+  +    +...                      ....|.|.+++.+
T Consensus         9 ~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~e   88 (117)
T d1um5h1           9 VLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTSE   88 (117)
T ss_dssp             EEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCCC
Confidence            689999999999976532 22345888871  11  1    1111                      4456999999999


Q ss_pred             CCeEEEEEEE
Q psy14542         70 DAGMYQCHVS   79 (371)
Q Consensus        70 d~G~Y~C~~~   79 (371)
                      |++.|.|...
T Consensus        89 DtAvYYCAr~   98 (117)
T d1um5h1          89 DSAVYYCARS   98 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeec
Confidence            9999999754

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.66  E-value=4.5e-05  Score=50.31  Aligned_cols=59  Identities=24%  Similarity=0.474  Sum_probs=41.2

Q ss_pred             EEEeccCcEEEEEEecCCC-CCCeeEEEeC--CEE------E--------eeC-------------CeeEEEEccCCcCC
Q psy14542         21 VVVDVGHRIELHCRVSPKR-LSSAKAWLKD--GLV------L--------RRN-------------SDEVLVLDRVQRED   70 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~--~~~------~--------~~~-------------~~~~l~i~~~~~~d   70 (371)
                      ..+.+|++++|.|.++... ....+.|+|.  |+.      +        ..+             ....|.|.+++.+|
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eD   89 (117)
T d1c5db1          10 GLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTED   89 (117)
T ss_dssp             SEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCc
Confidence            5789999999999765322 2345888871  111      1        010             44679999999999


Q ss_pred             CeEEEEEEE
Q psy14542         71 AGMYQCHVS   79 (371)
Q Consensus        71 ~G~Y~C~~~   79 (371)
                      ++.|.|...
T Consensus        90 tAvYYCAr~   98 (117)
T d1c5db1          90 TAIYFCTRE   98 (117)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEecc
Confidence            999999754

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.66  E-value=7.1e-05  Score=49.41  Aligned_cols=58  Identities=19%  Similarity=0.421  Sum_probs=40.4

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEeC--CE--E----EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKD--GL--V----LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~--~~--~----~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|.++.. .....+.|+|-  |+  +    +...                      ....|.|.+++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~e   89 (118)
T d1nlbh1          10 ELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecccC
Confidence            578999999999976532 22345888771  11  1    1110                      4456999999999


Q ss_pred             CCeEEEEEE
Q psy14542         70 DAGMYQCHV   78 (371)
Q Consensus        70 d~G~Y~C~~   78 (371)
                      |++.|.|..
T Consensus        90 DtAvYYCAr   98 (118)
T d1nlbh1          90 DTATYFCAR   98 (118)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEee
Confidence            999999964

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=9.6e-05  Score=47.31  Aligned_cols=59  Identities=14%  Similarity=0.280  Sum_probs=45.1

Q ss_pred             EEEeccCcEEEEEEecCCCCCCeeEE-EeCCEEEee-C------CeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542         21 VVVDVGHRIELHCRVSPKRLSSAKAW-LKDGLVLRR-N------SDEVLVLDRVQREDAGMYQCHVSAD   81 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~~~~~~W-~~~~~~~~~-~------~~~~l~i~~~~~~d~G~Y~C~~~~~   81 (371)
                      +.+.+|+.+.|.|.++  .|...+.. ..++..+.. .      ...-+.|.+++..++|.|.|.+...
T Consensus        15 V~v~eg~~~vIPC~vT--~P~~~VtL~~~~~~~~~p~g~~v~~Dpk~Gf~I~~~~~~~~g~y~C~a~~~   81 (95)
T d1fltx_          15 IHMTEGRELVIPCRVT--SPNITVTLKKFPLDTLIPDGKRIIWDSRKGFIISNATYKEIGLLTCEATVN   81 (95)
T ss_dssp             EEECTTSCEEECCCBS--CTTSCCEEEETTTEEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             EEEeCCCCEEEEccCC--CCCceeEEEeccCCccCCCCCEEEECCCCCEEEeCCCcccCeEEEEEEEEC
Confidence            7899999999999665  45556544 446665543 2      4556999999999999999999865

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.65  E-value=0.00013  Score=48.45  Aligned_cols=60  Identities=20%  Similarity=0.421  Sum_probs=41.7

Q ss_pred             EEEeccCcEEEEEEecCCC-CCCeeEEEeC----CEE----EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPKR-LSSAKAWLKD----GLV----LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~----~~~----~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|+++... ....+.|+|.    +.+    +...                      ....|.|.+++.+
T Consensus        11 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~e   90 (122)
T d1vgeh1          11 EVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPE   90 (122)
T ss_dssp             EEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCCC
Confidence            6799999999999765321 2345888871    111    1100                      3456999999999


Q ss_pred             CCeEEEEEEEc
Q psy14542         70 DAGMYQCHVSA   80 (371)
Q Consensus        70 d~G~Y~C~~~~   80 (371)
                      |++.|.|....
T Consensus        91 DtA~YYCAr~~  101 (122)
T d1vgeh1          91 DTAVYYCARDP  101 (122)
T ss_dssp             GCEEEEEEEET
T ss_pred             cceEEEEeecC
Confidence            99999998653

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.65  E-value=0.00012  Score=47.89  Aligned_cols=73  Identities=16%  Similarity=0.187  Sum_probs=48.2

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGM   73 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~   73 (371)
                      ..|.+.+.+..  .+..|+..+|.|.+...+| ...+.|++||..+...              ..+.|.|   ..+|...
T Consensus         3 ~~P~v~v~~~~--p~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~~~~   77 (103)
T d1hdma1           3 GFPIAEVFTLK--PLEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNF---TPEPSDI   77 (103)
T ss_dssp             BCCEEEEEESS--CCCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEE---CCCTTCC
T ss_pred             CCCeEEEECCC--chhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEE---ecCCCCE
Confidence            34566665544  2457899999997777666 4579999999876433              2223433   4455567


Q ss_pred             EEEEEEcCCCCeE
Q psy14542         74 YQCHVSADDDSAQ   86 (371)
Q Consensus        74 Y~C~~~~~~~~~~   86 (371)
                      |+|.+....-...
T Consensus        78 ytC~V~H~~l~~p   90 (103)
T d1hdma1          78 FSCIVTHEPDRYT   90 (103)
T ss_dssp             EEEEEEETTTTEE
T ss_pred             EEEEEEeCCCCCC
Confidence            9999998754443

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.64  E-value=7e-05  Score=50.46  Aligned_cols=62  Identities=16%  Similarity=0.445  Sum_probs=42.1

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCc--cc---------------ccCCceE-----EecceEEEeccCCCCCeEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDS--PV---------------EESDRIQ-----RIGSSLSISHVEESDSGVWNC  291 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~--~~---------------~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C  291 (371)
                      +.+|++++|.|... .....+.|++...  .+               ....++.     .....|.|.++..+|+|.|.|
T Consensus        11 ~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DSa~YyC   89 (114)
T d1ogae1          11 RKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAFYLC   89 (114)
T ss_dssp             EETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEEEEE
T ss_pred             EcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCceeEEE
Confidence            89999999999975 3345799997321  11               0001111     112369999999999999999


Q ss_pred             EEEcC
Q psy14542        292 VANNS  296 (371)
Q Consensus       292 ~a~n~  296 (371)
                      .+...
T Consensus        90 a~~~~   94 (114)
T d1ogae1          90 ASSSR   94 (114)
T ss_dssp             EEESS
T ss_pred             eeccC
Confidence            87643

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.64  E-value=0.0001  Score=49.97  Aligned_cols=63  Identities=25%  Similarity=0.417  Sum_probs=43.8

Q ss_pred             eecCCeEEEEEEeecCC--CCceEEEeC--Cccc------------ccCCceEEe------cceEEEeccCCCCCeEEEE
Q psy14542        234 VKKDESVILPCSAQGNP--LPTIKWYKQ--DSPV------------EESDRIQRI------GSSLSISHVEESDSGVWNC  291 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p--~~~v~W~~~--~~~~------------~~~~~~~~~------~~~l~i~~~~~~d~G~Y~C  291 (371)
                      +.+|++++|.|...+..  ...+.|++.  |+.+            ...+++...      ...|.|.+++.+|+|.|.|
T Consensus        13 v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~Dsa~YyC   92 (120)
T d1hxma1          13 VSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGSYYC   92 (120)
T ss_dssp             EETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEE
T ss_pred             ECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccCCceeec
Confidence            88999999999987643  245899972  2211            111333311      1379999999999999999


Q ss_pred             EEEcC
Q psy14542        292 VANNS  296 (371)
Q Consensus       292 ~a~n~  296 (371)
                      .....
T Consensus        93 A~~~~   97 (120)
T d1hxma1          93 ACDTL   97 (120)
T ss_dssp             EEECC
T ss_pred             CcccC
Confidence            87653

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.64  E-value=0.00033  Score=42.29  Aligned_cols=75  Identities=19%  Similarity=0.344  Sum_probs=50.5

Q ss_pred             eecCCeEEEEEEeec-CCCCceEEEeCCc----ccccCCceE--E-e-c----ceEEEeccCCCCCeEEEEEEEcCCCC-
Q psy14542        234 VKKDESVILPCSAQG-NPLPTIKWYKQDS----PVEESDRIQ--R-I-G----SSLSISHVEESDSGVWNCVANNSEGQ-  299 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~-~p~~~v~W~~~~~----~~~~~~~~~--~-~-~----~~l~i~~~~~~d~G~Y~C~a~n~~g~-  299 (371)
                      +..|+.+.|.|.+.- ...|+++|-+-++    ++..+....  . . +    -.|.+..+..+|.|.|+|.|.-..+- 
T Consensus        15 ~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s~vi   94 (104)
T d1xaua_          15 AWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQVI   94 (104)
T ss_dssp             ECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTEEE
T ss_pred             EecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCChhhe
Confidence            889999999999863 4568999987544    333222211  1 1 1    15888999999999999999865554 


Q ss_pred             ceeEEEEEE
Q psy14542        300 DKMQLFIQY  308 (371)
Q Consensus       300 ~~~~~~l~v  308 (371)
                      .+.++++.|
T Consensus        95 eSHSvti~V  103 (104)
T d1xaua_          95 NSHSVTIHV  103 (104)
T ss_dssp             ECCCEEEEE
T ss_pred             ecceEEEEe
Confidence            233444443

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.64  E-value=0.00016  Score=48.17  Aligned_cols=60  Identities=22%  Similarity=0.478  Sum_probs=41.3

Q ss_pred             EEEeccCcEEEEEEecCCC-CCCeeEEEeC--CE---EE---eeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPKR-LSSAKAWLKD--GL---VL---RRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~--~~---~~---~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|++++|.|.++... ....+.|+|.  |+   -+   ...                      ....|.|.+++.+
T Consensus        10 ~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~e   89 (119)
T d1qnzh_          10 ELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSD   89 (119)
T ss_dssp             CEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGG
T ss_pred             ceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCcc
Confidence            4788999999999765322 2345888871  11   11   100                      3456999999999


Q ss_pred             CCeEEEEEEEc
Q psy14542         70 DAGMYQCHVSA   80 (371)
Q Consensus        70 d~G~Y~C~~~~   80 (371)
                      |++.|.|....
T Consensus        90 DsAvYYCA~~~  100 (119)
T d1qnzh_          90 DSAVYYCAIHY  100 (119)
T ss_dssp             GCEEEEEEECS
T ss_pred             ceeEEEEEEec
Confidence            99999997643

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.63  E-value=9.9e-05  Score=47.74  Aligned_cols=60  Identities=15%  Similarity=0.427  Sum_probs=38.7

Q ss_pred             ecCCeEEEEEEeec-CCCC-ceEEEeCCcccccCCc---eEEec------ceEEEeccCCCCCeEEEEEEEcCC
Q psy14542        235 KKDESVILPCSAQG-NPLP-TIKWYKQDSPVEESDR---IQRIG------SSLSISHVEESDSGVWNCVANNSE  297 (371)
Q Consensus       235 ~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~---~~~~~------~~l~i~~~~~~d~G~Y~C~a~n~~  297 (371)
                      ..++.++|.|.+.| +|.. .++|++++..+.....   ....+      +.|.+.   .+|...|+|++.+..
T Consensus        14 ~~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~s   84 (96)
T d2h26a1          14 PGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVA---DGEAAGLSCRVKHSS   84 (96)
T ss_dssp             CSTTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEE---GGGCTTEEEEEEEGG
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEe---CccCCEEEEEEEeCC
Confidence            34568999999998 4544 6999999876543311   11112      235554   345668999998765

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.63  E-value=0.00013  Score=46.44  Aligned_cols=66  Identities=17%  Similarity=0.237  Sum_probs=42.5

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC---------------CeeEEEEccCCcCCCeE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN---------------SDEVLVLDRVQREDAGM   73 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~   73 (371)
                      +|++.+..    ....++.++|.|.+...+| ...+.|+++|+.+...               ....|.|.   ..+...
T Consensus         3 pP~v~v~~----~~~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~---~~~~~~   75 (89)
T d2mhaa1           3 SPKAHVTH----HSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVP---LGKEQY   75 (89)
T ss_dssp             CCEEEECC----EESCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEE---SSTTTT
T ss_pred             CCEeEEEc----cCCCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEec---CcCCCE
Confidence            45555532    2334678999997776665 4469999999988654               22334443   334447


Q ss_pred             EEEEEEcCC
Q psy14542         74 YQCHVSADD   82 (371)
Q Consensus        74 Y~C~~~~~~   82 (371)
                      |+|.+...+
T Consensus        76 ytC~V~H~~   84 (89)
T d2mhaa1          76 YTCHVYHQG   84 (89)
T ss_dssp             CEEEEECSS
T ss_pred             EEEEEEECC
Confidence            999987654

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=4.6e-05  Score=46.57  Aligned_cols=54  Identities=20%  Similarity=0.406  Sum_probs=41.3

Q ss_pred             eccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCc-CCCeEEEEEEEc
Q psy14542         24 DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQR-EDAGMYQCHVSA   80 (371)
Q Consensus        24 ~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~-~d~G~Y~C~~~~   80 (371)
                      ..|.+|+|+|.   ......+.|.+++..+...        ....|.+.+... +++|.|.|.+..
T Consensus         8 ISGTtV~LTCP---~~~~~~i~W~~n~~~~~~~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_           8 ISGTTVILTCP---QYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             EETTEEEEECS---SCTTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEETT
T ss_pred             EeCCEEEEECC---CCCCCceeeeeccccccCCCcccccccccceEEecccCccccCceEEEEcCC
Confidence            36889999993   2344679999999888753        224688888877 789999999854

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=5.9e-05  Score=50.12  Aligned_cols=75  Identities=17%  Similarity=0.226  Sum_probs=47.1

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCC-CeeEEEeCCEEEeeC----------------CeeEEEEccCCcCCC
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRN----------------SDEVLVLDRVQREDA   71 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~~~----------------~~~~l~i~~~~~~d~   71 (371)
                      .+|+|.+.++. .....++.++|.|.+....|. ..|.|++||..+...                ..+.|.|..-.-...
T Consensus         4 ~~P~V~l~~Ps-~~~~~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~   82 (107)
T d1c5cl2           4 AAPSVFIFPPS-DEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKH   82 (107)
T ss_dssp             BCCEEEEECCC-HHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTC
T ss_pred             cCCEEEEECCC-HHHhcCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCC
Confidence            35677776655 233346789999976665554 579999998866533                112344443332333


Q ss_pred             eEEEEEEEcCCCC
Q psy14542         72 GMYQCHVSADDDS   84 (371)
Q Consensus        72 G~Y~C~~~~~~~~   84 (371)
                      ..|+|.+.+....
T Consensus        83 ~~ytC~V~H~~~~   95 (107)
T d1c5cl2          83 KVYACEVTHQGLS   95 (107)
T ss_dssp             CEEEEEEECTTCS
T ss_pred             CEEEEEEEECCCC
Confidence            4899999876543

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.61  E-value=8.7e-05  Score=49.19  Aligned_cols=60  Identities=27%  Similarity=0.519  Sum_probs=41.6

Q ss_pred             cEEEeccCcEEEEEEecCCC-CCCeeEEEeC----CEE----EeeC----------------------CeeEEEEccCCc
Q psy14542         20 QVVVDVGHRIELHCRVSPKR-LSSAKAWLKD----GLV----LRRN----------------------SDEVLVLDRVQR   68 (371)
Q Consensus        20 ~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~----~~~----~~~~----------------------~~~~l~i~~~~~   68 (371)
                      +..+.+|+++.|.|.++... ....+.|+|-    +.+    +...                      ....|.|.+++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~   88 (119)
T d1eapb1           9 TELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTS   88 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccC
Confidence            36789999999999765321 2345888861    111    1111                      445799999999


Q ss_pred             CCCeEEEEEEE
Q psy14542         69 EDAGMYQCHVS   79 (371)
Q Consensus        69 ~d~G~Y~C~~~   79 (371)
                      +|++.|.|...
T Consensus        89 eDTAvYYCAr~   99 (119)
T d1eapb1          89 EDSAVYFCKRS   99 (119)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CcceEEEEEEe
Confidence            99999999753

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.61  E-value=7.9e-05  Score=49.24  Aligned_cols=58  Identities=24%  Similarity=0.441  Sum_probs=40.0

Q ss_pred             EEEeccCcEEEEEEecCCC-CCCeeEEEe--CCE--E----EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPKR-LSSAKAWLK--DGL--V----LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~--~~~--~----~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|+++... ....+.|+|  .|+  +    +...                      ....|.|++++.+
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~e   89 (118)
T d2jelh1          10 ELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTSE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccccC
Confidence            6789999999999765321 233578876  111  0    1100                      4457999999999


Q ss_pred             CCeEEEEEE
Q psy14542         70 DAGMYQCHV   78 (371)
Q Consensus        70 d~G~Y~C~~   78 (371)
                      |++.|.|.-
T Consensus        90 DTAvYYCAr   98 (118)
T d2jelh1          90 DSAIYYCAR   98 (118)
T ss_dssp             GCEEEEEEE
T ss_pred             cceeeeEEE
Confidence            999999964

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=6e-05  Score=49.60  Aligned_cols=64  Identities=17%  Similarity=0.356  Sum_probs=42.6

Q ss_pred             cCCeEEEEEEeecC-CC-CceEEEeCCcccccCC---ceE------EecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        236 KDESVILPCSAQGN-PL-PTIKWYKQDSPVEESD---RIQ------RIGSSLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       236 ~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~---~~~------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      .++.++|.|.+.|+ |. ..|+|.+||.......   ...      ...+.|.|..-.....-.|+|++.+....
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~l~   92 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH   92 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCCCC
Confidence            46779999999984 43 4799999987544321   111      12235777666555666899999986543

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.60  E-value=0.00025  Score=46.96  Aligned_cols=60  Identities=25%  Similarity=0.407  Sum_probs=41.5

Q ss_pred             EEEeccCcEEEEEEecCCCC--CCeeEEEe--CCEEE------eeC---------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPKRL--SSAKAWLK--DGLVL------RRN---------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~--~~~~~W~~--~~~~~------~~~---------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|.++...-  ...+.|+|  .|+-+      ...                     +...|.|.+++.+
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~e   89 (119)
T d1ncwh1          10 GLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTE   89 (119)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccC
Confidence            47999999999997654322  23478887  12111      111                     4467999999999


Q ss_pred             CCeEEEEEEEc
Q psy14542         70 DAGMYQCHVSA   80 (371)
Q Consensus        70 d~G~Y~C~~~~   80 (371)
                      |++.|.|....
T Consensus        90 DTAvYYCAr~~  100 (119)
T d1ncwh1          90 DTATYYCAGLL  100 (119)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CceEEEEeEec
Confidence            99999997553

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.60  E-value=0.00013  Score=48.75  Aligned_cols=59  Identities=22%  Similarity=0.380  Sum_probs=40.9

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEeC--CE---EE---eeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKD--GL---VL---RRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~--~~---~~---~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|++++|.|+++.. .....+.|+|-  |+   -+   ...                      ....|.|.+++.+
T Consensus        10 ~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~e   89 (121)
T d1j05b_          10 ELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSE   89 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCcC
Confidence            679999999999976532 22345788761  11   01   100                      3456999999999


Q ss_pred             CCeEEEEEEE
Q psy14542         70 DAGMYQCHVS   79 (371)
Q Consensus        70 d~G~Y~C~~~   79 (371)
                      |++.|.|...
T Consensus        90 DtAvYYCAr~   99 (121)
T d1j05b_          90 DTAVYYCAPF   99 (121)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEeEee
Confidence            9999999864

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.60  E-value=0.00013  Score=46.70  Aligned_cols=57  Identities=21%  Similarity=0.278  Sum_probs=38.5

Q ss_pred             ccCcEEEEEEecCCCCC-CeeEEEeCCEEEeeC-------------CeeEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542         25 VGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRN-------------SDEVLVLDRVQREDAGMYQCHVSADDDS   84 (371)
Q Consensus        25 ~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~~~-------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~   84 (371)
                      .++.++|.|.+...+|. ..++|++||..+...             ....|.+   ...+...|+|++....-.
T Consensus        14 ~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v---~~~~~~~ytC~V~H~sL~   84 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEV---KRGDEHHYQCQVEHEGLA   84 (91)
T ss_dssp             STTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEE---ETTCGGGEEEEEECTTSS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEE---CCCCCCEEEEEEEeCCCC
Confidence            34679999977766664 579999999876544             2223444   334556899999876443

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.60  E-value=0.0001  Score=49.59  Aligned_cols=59  Identities=22%  Similarity=0.406  Sum_probs=41.1

Q ss_pred             EEEeccCcEEEEEEecCCC-CCCeeEEEe--CCEE------EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPKR-LSSAKAWLK--DGLV------LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~--~~~~------~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|+++... ....+.|+|  .|+-      +...                      ....|.|.+++.+
T Consensus        10 ~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~e   89 (125)
T d1rihh1          10 ELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTSE   89 (125)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCcc
Confidence            6799999999999765322 233578876  1111      1100                      4456999999999


Q ss_pred             CCeEEEEEEE
Q psy14542         70 DAGMYQCHVS   79 (371)
Q Consensus        70 d~G~Y~C~~~   79 (371)
                      |++.|.|...
T Consensus        90 DtAvYYCAR~   99 (125)
T d1rihh1          90 DSAVYYCARE   99 (125)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeee
Confidence            9999999864

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.60  E-value=0.00014  Score=48.31  Aligned_cols=59  Identities=19%  Similarity=0.365  Sum_probs=40.8

Q ss_pred             EEEeccCcEEEEEEecCCC-CCCeeEEEeC--CE--E----EeeC---------------------CeeEEEEccCCcCC
Q psy14542         21 VVVDVGHRIELHCRVSPKR-LSSAKAWLKD--GL--V----LRRN---------------------SDEVLVLDRVQRED   70 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~--~~--~----~~~~---------------------~~~~l~i~~~~~~d   70 (371)
                      ..+.+|+++.|.|+++... ....+.|+|.  |+  +    +...                     ....|.|.+++.+|
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eD   89 (120)
T d1dn0b1          10 GLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAAD   89 (120)
T ss_dssp             CEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccccc
Confidence            5799999999999765422 2345788871  11  1    1100                     45679999999999


Q ss_pred             CeEEEEEEE
Q psy14542         71 AGMYQCHVS   79 (371)
Q Consensus        71 ~G~Y~C~~~   79 (371)
                      ++.|.|...
T Consensus        90 tA~YYCAr~   98 (120)
T d1dn0b1          90 TAVYYCARP   98 (120)
T ss_dssp             CEEEEEEEC
T ss_pred             ccEEEEEee
Confidence            999999543

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.60  E-value=4.3e-05  Score=50.83  Aligned_cols=62  Identities=24%  Similarity=0.493  Sum_probs=42.6

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeC--Cccc------------ccCCceEE----ecceEEEeccCCCCCeEEEEEEEc
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQ--DSPV------------EESDRIQR----IGSSLSISHVEESDSGVWNCVANN  295 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n  295 (371)
                      +.+|++++|.|.........+.|++.  |..+            ....++..    ....|.|.+++.+|+|.|.|.+..
T Consensus        11 ~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~   90 (108)
T d1nfde1          11 VTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCLSSY   90 (108)
T ss_dssp             EETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEEEEE
T ss_pred             ECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEEEEeec
Confidence            88999999999875444446899872  2211            01123331    123799999999999999998764

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=3.2e-05  Score=51.01  Aligned_cols=74  Identities=15%  Similarity=0.206  Sum_probs=46.5

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGM   73 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~   73 (371)
                      ..|+|.+.++. ..-..++.++|.|.+...+| ...|.|++||......              ..+.|.|..-.....-.
T Consensus         3 ~~P~V~i~~ps-~~~~~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~   81 (102)
T d1l6xa2           3 REPQVYTLPPS-RDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNV   81 (102)
T ss_dssp             BCCEEEEECCC-GGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCC
T ss_pred             cCCEEEEECcC-HHHhcCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCE
Confidence            35677766554 22235788999997766555 4579999999876543              22334444333233347


Q ss_pred             EEEEEEcCCC
Q psy14542         74 YQCHVSADDD   83 (371)
Q Consensus        74 Y~C~~~~~~~   83 (371)
                      |+|.+.+...
T Consensus        82 ytC~V~H~~l   91 (102)
T d1l6xa2          82 FSCSVMHEAL   91 (102)
T ss_dssp             EEEEEECTTS
T ss_pred             EEEEEEeCCC
Confidence            9999987643

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.00011  Score=47.49  Aligned_cols=59  Identities=14%  Similarity=0.280  Sum_probs=38.5

Q ss_pred             CCeEEEEEEeecCCC--CceEEEeCCcccccCCce----EEec------ceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542        237 DESVILPCSAQGNPL--PTIKWYKQDSPVEESDRI----QRIG------SSLSISHVEESDSGVWNCVANNSEG  298 (371)
Q Consensus       237 g~~~~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~----~~~~------~~l~i~~~~~~d~G~Y~C~a~n~~g  298 (371)
                      ++.++|.|.+.|+.+  ..++|.+||..+..+...    ...+      ..|.+   ...+...|+|++.+..-
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v---~~~~~~~ytC~V~H~~L   85 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVV---PSGEEQRYTCHVQHEGL   85 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEE---ETTCGGGEEEEEECTTC
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEE---EcCCCCEEEEEEEECcC
Confidence            567999999999644  458999999876544211    1111      23444   34455689999997654

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.59  E-value=0.00011  Score=48.77  Aligned_cols=65  Identities=14%  Similarity=0.197  Sum_probs=41.6

Q ss_pred             eecCCeEEEEEEeecC-CC-CceEEEeCCcccccCCce---EEe------cceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        234 VKKDESVILPCSAQGN-PL-PTIKWYKQDSPVEESDRI---QRI------GSSLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~~---~~~------~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      ...+..++|.|.+.++ |. ..++|.+||..+......   ...      .+.|.+.....  ...|+|.+.+.....
T Consensus        21 ~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w--~~~ytC~V~H~s~~~   96 (107)
T d1hxmb2          21 TKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL--DKEHRCIVRHENNKN   96 (107)
T ss_dssp             GGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG--GSCEEEEEEETTSGG
T ss_pred             HccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccC--CCeEEEEEEECCCCC
Confidence            5567789999999985 43 359999999866543111   111      23455544332  237999999876554

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.59  E-value=0.00011  Score=48.71  Aligned_cols=59  Identities=22%  Similarity=0.440  Sum_probs=41.3

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEeC--C--EE----EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKD--G--LV----LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~--~--~~----~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|+++.. .....+.|+|-  |  .+    +...                      ....|.|.+++.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~e   89 (119)
T d1rz7h1          10 EVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSE   89 (119)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCcc
Confidence            678999999999976532 22345788761  1  10    1100                      4557999999999


Q ss_pred             CCeEEEEEEE
Q psy14542         70 DAGMYQCHVS   79 (371)
Q Consensus        70 d~G~Y~C~~~   79 (371)
                      |++.|.|...
T Consensus        90 DTAvYYCAr~   99 (119)
T d1rz7h1          90 DTAVYYCAAD   99 (119)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEeec
Confidence            9999999764

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.59  E-value=2.8e-05  Score=53.57  Aligned_cols=66  Identities=17%  Similarity=0.259  Sum_probs=44.2

Q ss_pred             eecCCeEEEEEEeecC-CC-CceEEEeCCcccccCCc---------------eEEecceEEEeccCCCCCe-EEEEEEEc
Q psy14542        234 VKKDESVILPCSAQGN-PL-PTIKWYKQDSPVEESDR---------------IQRIGSSLSISHVEESDSG-VWNCVANN  295 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~---------------~~~~~~~l~i~~~~~~d~G-~Y~C~a~n  295 (371)
                      ...+..++|.|.+.++ |. ..|+|++||..+..+..               .....+.|.|......+.| .|+|++.+
T Consensus        17 ~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W~~~g~~ytC~V~H   96 (127)
T d1ogae2          17 ISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQF   96 (127)
T ss_dssp             HHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEE
T ss_pred             hccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHhCCCCCEEEEEEEE
Confidence            4456789999999985 43 36999999886643210               1122246777776666655 79999987


Q ss_pred             CCCC
Q psy14542        296 SEGQ  299 (371)
Q Consensus       296 ~~g~  299 (371)
                      ....
T Consensus        97 ~~l~  100 (127)
T d1ogae2          97 YGLS  100 (127)
T ss_dssp             CCBC
T ss_pred             CCCC
Confidence            6543

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.59  E-value=2.3e-05  Score=54.02  Aligned_cols=73  Identities=10%  Similarity=0.188  Sum_probs=49.4

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC--------------------CeeEEEEccCCc
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN--------------------SDEVLVLDRVQR   68 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~--------------------~~~~l~i~~~~~   68 (371)
                      +|+|.+.+.....+..++.++|.|.+....| ...|.|++||+.+...                    ..+.|.|....-
T Consensus         4 PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W   83 (127)
T d1ogae2           4 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFW   83 (127)
T ss_dssp             CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHH
T ss_pred             CCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHh
Confidence            5677776654234566788999997766555 4569999999987643                    113566654444


Q ss_pred             CCCe-EEEEEEEcCC
Q psy14542         69 EDAG-MYQCHVSADD   82 (371)
Q Consensus        69 ~d~G-~Y~C~~~~~~   82 (371)
                      .+.| .|+|.+.+.+
T Consensus        84 ~~~g~~ytC~V~H~~   98 (127)
T d1ogae2          84 QNPRNHFRCQVQFYG   98 (127)
T ss_dssp             TCTTCEEEEEEEECC
T ss_pred             CCCCCEEEEEEEECC
Confidence            5656 7999998654

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.59  E-value=0.00025  Score=46.71  Aligned_cols=59  Identities=25%  Similarity=0.451  Sum_probs=41.5

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEe----CCEE----EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLK----DGLV----LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~----~~~~----~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|+++.. .....+.|+|    .+.+    +...                      ....|.|.+++.+
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~e   89 (117)
T d1jnhb1          10 ELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSE   89 (117)
T ss_dssp             EECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCC
Confidence            678999999999976642 2344588887    1111    1100                      4456899999999


Q ss_pred             CCeEEEEEEE
Q psy14542         70 DAGMYQCHVS   79 (371)
Q Consensus        70 d~G~Y~C~~~   79 (371)
                      |++.|.|...
T Consensus        90 DTAvYYCAr~   99 (117)
T d1jnhb1          90 DSAVYSCSRG   99 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeec
Confidence            9999999754

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=2.9e-05  Score=51.38  Aligned_cols=59  Identities=25%  Similarity=0.442  Sum_probs=39.5

Q ss_pred             eccCcEEEEEEecCCCCCC-eeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542         24 DVGHRIELHCRVSPKRLSS-AKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGMYQCHVSADD   82 (371)
Q Consensus        24 ~~G~~v~l~C~~~~~~~~~-~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~Y~C~~~~~~   82 (371)
                      ..+..++|.|.+....|.. .+.|+++|..+...              ..+.|.|..-.......|+|.+.+..
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQG   92 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETT
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECC
Confidence            3456799999766656544 69999999887654              22345554433333557999999864

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.00013  Score=44.47  Aligned_cols=73  Identities=23%  Similarity=0.434  Sum_probs=50.0

Q ss_pred             ecCCeEEEEEEeecCCCCceEEEeCCcccccC---CceEEecceEEEeccCC-CCCeEEEEEEEcCCC-CceeEEEEEEe
Q psy14542        235 KKDESVILPCSAQGNPLPTIKWYKQDSPVEES---DRIQRIGSSLSISHVEE-SDSGVWNCVANNSEG-QDKMQLFIQYA  309 (371)
Q Consensus       235 ~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~---~~~~~~~~~l~i~~~~~-~d~G~Y~C~a~n~~g-~~~~~~~l~v~  309 (371)
                      ..|.+|.|+|.-  .....+.|.+++..+...   .........|.+.+..+ +++|.|.|.+..... .....+.|+.+
T Consensus         8 ISGTtV~LTCP~--~~~~~i~W~~n~~~~~~~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~~~~~~~~~~LYLKAR   85 (91)
T d1xiwa_           8 ISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR   85 (91)
T ss_dssp             EETTEEEEECSS--CTTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGCCEEEEEEEC
T ss_pred             EeCCEEEEECCC--CCCCceeeeeccccccCCCcccccccccceEEecccCccccCceEEEEcCCCCCCCcceEEEEEeE
Confidence            458999999964  344679999999866543   22334556789988766 799999999854322 23344556554

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.58  E-value=0.00031  Score=46.94  Aligned_cols=59  Identities=22%  Similarity=0.410  Sum_probs=39.9

Q ss_pred             EEEeccCcEEEEEEecCCC---CCCeeEEEe--CCE--E-E---eeC---------------------CeeEEEEccCCc
Q psy14542         21 VVVDVGHRIELHCRVSPKR---LSSAKAWLK--DGL--V-L---RRN---------------------SDEVLVLDRVQR   68 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~---~~~~~~W~~--~~~--~-~---~~~---------------------~~~~l~i~~~~~   68 (371)
                      ..+.+|++++|.|.++...   ....+.|+|  .|+  + +   ...                     ....|.|.+++.
T Consensus        10 ~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~   89 (123)
T d1r0ah1          10 GIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVET   89 (123)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeeccc
Confidence            4689999999999655321   122467986  111  1 1   100                     345699999999


Q ss_pred             CCCeEEEEEEE
Q psy14542         69 EDAGMYQCHVS   79 (371)
Q Consensus        69 ~d~G~Y~C~~~   79 (371)
                      +|++.|.|...
T Consensus        90 eDsAvYyCAr~  100 (123)
T d1r0ah1          90 ADTAIYYCAQS  100 (123)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEeeccc
Confidence            99999999854

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.58  E-value=0.00017  Score=48.35  Aligned_cols=61  Identities=28%  Similarity=0.456  Sum_probs=41.7

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeC--Cccc----------------ccCCceEE-----ecceEEEeccCCCCCeEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQ--DSPV----------------EESDRIQR-----IGSSLSISHVEESDSGVWN  290 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~----------------~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~  290 (371)
                      +.+|++++|.|.... ....+.|++.  ++.+                ....++..     ....|.|.++..+|+|.|.
T Consensus        11 ~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   89 (112)
T d1kgce1          11 AKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQEDSAVYL   89 (112)
T ss_dssp             EETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGGCEEEE
T ss_pred             ECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCCCEEEE
Confidence            889999999998543 3457999873  2111                01122221     1236999999999999999


Q ss_pred             EEEEc
Q psy14542        291 CVANN  295 (371)
Q Consensus       291 C~a~n  295 (371)
                      |.+.-
T Consensus        90 Ca~~~   94 (112)
T d1kgce1          90 CASSL   94 (112)
T ss_dssp             EEEES
T ss_pred             EeeeC
Confidence            98864

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.57  E-value=0.00022  Score=45.95  Aligned_cols=70  Identities=17%  Similarity=0.348  Sum_probs=43.0

Q ss_pred             cCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccc
Q psy14542        110 VGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYR  188 (371)
Q Consensus       110 ~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g  188 (371)
                      .+..++|.|.+.++ |....++|.++|..+......   ......+..|.|         ...  +.|.   +...+ ..
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~---~~~~~~~~~~ty---------~~~--s~l~---v~~~~-~~   75 (94)
T d1hyrc1          14 SEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQ---WGDVLPDGNGTY---------QTW--VATR---ICQGE-EQ   75 (94)
T ss_dssp             SSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSE---ECCCEECSSSCE---------EEE--EEEE---EETTC-GG
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEE---cCceEECCCCcE---------EEE--EEEE---EcCCC-CC
Confidence            35678999999886 556899999999887654211   111111222322         211  3333   34455 66


Q ss_pred             eeEEEeecc
Q psy14542        189 SYQCRGVNK  197 (371)
Q Consensus       189 ~y~C~~~~~  197 (371)
                      .|+|.+.+.
T Consensus        76 ~ytC~V~H~   84 (94)
T d1hyrc1          76 RFTCYMEHS   84 (94)
T ss_dssp             GEEEEEEET
T ss_pred             EEEEEEEEC
Confidence            899999876

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.57  E-value=6.3e-05  Score=49.34  Aligned_cols=63  Identities=19%  Similarity=0.303  Sum_probs=42.2

Q ss_pred             cCCeEEEEEEeecC-CC-CceEEEeCCcccccCCc---eE------EecceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542        236 KDESVILPCSAQGN-PL-PTIKWYKQDSPVEESDR---IQ------RIGSSLSISHVEESDSGVWNCVANNSEG  298 (371)
Q Consensus       236 ~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~---~~------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  298 (371)
                      ..+.++|.|.+.++ |. ..|+|.++|..+.....   ..      ...+.|.|..-.......|+|++.+..-
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~l   90 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL   90 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCC
Confidence            35678999999984 43 56999999986543211   11      1223566766555667789999987643

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.57  E-value=8.6e-05  Score=48.74  Aligned_cols=59  Identities=22%  Similarity=0.403  Sum_probs=40.8

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEeC--C--EE----EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKD--G--LV----LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~--~--~~----~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|.++.. .....+.|+|-  |  .+    +...                      ....|.|++++.+
T Consensus        10 ~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~e   89 (114)
T d1indh1          10 DSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSE   89 (114)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccC
Confidence            579999999999976532 22345788871  1  11    1111                      3456999999999


Q ss_pred             CCeEEEEEEE
Q psy14542         70 DAGMYQCHVS   79 (371)
Q Consensus        70 d~G~Y~C~~~   79 (371)
                      |++.|.|...
T Consensus        90 DtAvYYCA~~   99 (114)
T d1indh1          90 DTALYFCASH   99 (114)
T ss_dssp             GCEEEEEECG
T ss_pred             cccEEEECCC
Confidence            9999999753

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.56  E-value=0.0002  Score=47.47  Aligned_cols=60  Identities=23%  Similarity=0.384  Sum_probs=41.7

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEe--CCEEE------ee-----------C-------------CeeEEEEccCC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLK--DGLVL------RR-----------N-------------SDEVLVLDRVQ   67 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~--~~~~~------~~-----------~-------------~~~~l~i~~~~   67 (371)
                      ..+.+|+++.|.|.++.. .....+.|+|  .|+-+      ..           .             ....|.|.+++
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~   89 (120)
T d1dlfh_          10 GLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLR   89 (120)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeecc
Confidence            468999999999976532 2344588887  12111      00           0             34579999999


Q ss_pred             cCCCeEEEEEEEc
Q psy14542         68 REDAGMYQCHVSA   80 (371)
Q Consensus        68 ~~d~G~Y~C~~~~   80 (371)
                      .+|++.|.|....
T Consensus        90 ~eDtAvYYCA~~~  102 (120)
T d1dlfh_          90 AEDTGIYYCTGIY  102 (120)
T ss_dssp             GGGCEEEEEEEEB
T ss_pred             CCCceEEEeeEec
Confidence            9999999997653

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.56  E-value=0.00017  Score=48.18  Aligned_cols=59  Identities=19%  Similarity=0.402  Sum_probs=41.4

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEe--CC--EE----EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLK--DG--LV----LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~--~~--~~----~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|+++.. .....+.|+|  .|  .+    +...                      ....|.|.+++.+
T Consensus         9 ~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~e   88 (126)
T d1lmka1           9 ELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTSE   88 (126)
T ss_dssp             EEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCCC
Confidence            689999999999976543 2234478876  11  11    1101                      5567999999999


Q ss_pred             CCeEEEEEEE
Q psy14542         70 DAGMYQCHVS   79 (371)
Q Consensus        70 d~G~Y~C~~~   79 (371)
                      |++.|.|.-.
T Consensus        89 DTAvYYCAr~   98 (126)
T d1lmka1          89 DSAVYYCARG   98 (126)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeec
Confidence            9999999753

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.56  E-value=6e-05  Score=49.53  Aligned_cols=66  Identities=20%  Similarity=0.307  Sum_probs=38.7

Q ss_pred             ecCCeEEEEEEeecC-CC-CceEEEeCCccccc--CCceE-----EecceEEEeccCCCCCeEEEEEEEcCCCCce
Q psy14542        235 KKDESVILPCSAQGN-PL-PTIKWYKQDSPVEE--SDRIQ-----RIGSSLSISHVEESDSGVWNCVANNSEGQDK  301 (371)
Q Consensus       235 ~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~--~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  301 (371)
                      ..++.++|.|.+.|+ |. ..|.|..++.....  .....     ...+.|.|..-... .+.|+|++.+..+...
T Consensus        18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~   92 (102)
T d1mjuh2          18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWP-SQSITCNVAHPASSTK   92 (102)
T ss_dssp             ----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTT-TSCCEEEEEEGGGTEE
T ss_pred             cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccccCCCCEEEEEEEEEehhHcC-CceEEEEEEECCCCEE
Confidence            346789999999984 33 46999766542111  11111     12245777666553 5689999998766543

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.56  E-value=2.8e-05  Score=51.11  Aligned_cols=73  Identities=12%  Similarity=0.196  Sum_probs=45.0

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGM   73 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~   73 (371)
                      .+|.|.+.++. ......+.++|.|.+...+| ...+.|++||..+...              ..+.|.|..-.-.....
T Consensus         2 ~~P~V~i~~ps-~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~   80 (101)
T d1cqka_           2 AAPQVYTIPPP-LEQMAKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNT   80 (101)
T ss_dssp             BCCEEEEECCC-GGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCC
T ss_pred             cCCEEEEECCC-HHHHCCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCE
Confidence            35667776554 22234678999997766555 5679999999865432              22334443332233457


Q ss_pred             EEEEEEcCC
Q psy14542         74 YQCHVSADD   82 (371)
Q Consensus        74 Y~C~~~~~~   82 (371)
                      |+|.+....
T Consensus        81 ytC~V~H~~   89 (101)
T d1cqka_          81 FTCSVLHEG   89 (101)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEECC
Confidence            999998754

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.56  E-value=0.00019  Score=48.02  Aligned_cols=60  Identities=25%  Similarity=0.436  Sum_probs=41.9

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEe--CC--EE----EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLK--DG--LV----LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~--~~--~~----~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|.++.. .....+.|+|  -|  .+    +...                      ....|.|++++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~e   89 (127)
T d2fx7h1          10 EVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPE   89 (127)
T ss_dssp             EEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCcc
Confidence            578899999999976532 2334578886  11  11    1111                      4467999999999


Q ss_pred             CCeEEEEEEEc
Q psy14542         70 DAGMYQCHVSA   80 (371)
Q Consensus        70 d~G~Y~C~~~~   80 (371)
                      |++.|.|.-..
T Consensus        90 DTavYYCAR~~  100 (127)
T d2fx7h1          90 DTAVYYCAREG  100 (127)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cceEEEEeecc
Confidence            99999998653

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.56  E-value=0.00013  Score=48.29  Aligned_cols=60  Identities=20%  Similarity=0.430  Sum_probs=41.7

Q ss_pred             cEEEeccCcEEEEEEecCC-CCCCeeEEEeC--C--EE----EeeC----------------------CeeEEEEccCCc
Q psy14542         20 QVVVDVGHRIELHCRVSPK-RLSSAKAWLKD--G--LV----LRRN----------------------SDEVLVLDRVQR   68 (371)
Q Consensus        20 ~~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~--~--~~----~~~~----------------------~~~~l~i~~~~~   68 (371)
                      +..+.+|+++.|.|.++.. .....+.|+|-  |  .+    +...                      ....|.|++++.
T Consensus         9 ~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~   88 (120)
T d1ad9b1           9 AEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRS   88 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCC
Confidence            3679999999999976532 22345788761  1  10    1100                      456789999999


Q ss_pred             CCCeEEEEEEE
Q psy14542         69 EDAGMYQCHVS   79 (371)
Q Consensus        69 ~d~G~Y~C~~~   79 (371)
                      +|++.|.|...
T Consensus        89 eDTAvYYCAr~   99 (120)
T d1ad9b1          89 EDTAFYFCARE   99 (120)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEEEc
Confidence            99999999764

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.55  E-value=0.00028  Score=47.06  Aligned_cols=59  Identities=24%  Similarity=0.446  Sum_probs=41.5

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEe----CCEE----EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLK----DGLV----LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~----~~~~----~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      -.+.+|+++.|.|+++.. .....+.|+|    .+.+    +...                      ....|.|.+++.+
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~e   89 (125)
T d1op3h1          10 GLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVE   89 (125)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCc
Confidence            579999999999976532 2234588887    1211    1100                      4467899999999


Q ss_pred             CCeEEEEEEE
Q psy14542         70 DAGMYQCHVS   79 (371)
Q Consensus        70 d~G~Y~C~~~   79 (371)
                      |++.|.|...
T Consensus        90 DTAvYYCAr~   99 (125)
T d1op3h1          90 DTAIYYCARK   99 (125)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceeEeEeec
Confidence            9999999864

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.55  E-value=0.00061  Score=45.99  Aligned_cols=81  Identities=15%  Similarity=0.210  Sum_probs=44.7

Q ss_pred             ecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCc-----CCCeeEEEEEeCCceeEeccceEEEEEee
Q psy14542        109 DVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQR-----EDAGMYQCHIEDGKYHMLSSGELIIHQVD  182 (371)
Q Consensus       109 ~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~-----~~~g~y~~~~~~~~~~~~~~~~l~i~~~~  182 (371)
                      .+|++++|.|.+.+.. ....+.||+...  .....+.+.+.....     ...+.+........    ....|.|.+++
T Consensus        14 ~~G~svtL~C~~~~~~~~~~~i~WYrQ~p--g~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~----~~~~L~I~~l~   87 (120)
T d1ypzf1          14 PRDETAQISCKVFIESFRSVTIHWYRQKP--NQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSA----STSILTIYSLE   87 (120)
T ss_dssp             ETTSCEEEEEEECCGGGGGCCEEEEEECT--TTCCEEEEEECSSCCCEEEESSSSEEEEEECCTT----TEEEEEECSCC
T ss_pred             cCCCcEEEEEEEecccccCCcccEEEeCC--cccccccccccccccceeeecccccccccccccc----ccccccccccc
Confidence            6899999999986542 224689998321  011122232222111     11122221111100    12469999999


Q ss_pred             cCCccceeEEEeec
Q psy14542        183 ESDRYRSYQCRGVN  196 (371)
Q Consensus       183 ~~d~~g~y~C~~~~  196 (371)
                      .+| +|.|.|....
T Consensus        88 ~~D-sa~YyCA~~~  100 (120)
T d1ypzf1          88 EED-EAIYYCSYGE  100 (120)
T ss_dssp             GGG-CSEEEEEECC
T ss_pred             ccc-ceeEEEEEcC
Confidence            999 9999997653

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.55  E-value=0.00014  Score=48.49  Aligned_cols=60  Identities=22%  Similarity=0.377  Sum_probs=41.5

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEe--CCE--E----EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLK--DGL--V----LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~--~~~--~----~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|+++.. .....+.|+|  .|+  +    +...                      ....|.|.+++.+
T Consensus        10 ~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~e   89 (123)
T d1mqkh_          10 DLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSE   89 (123)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccC
Confidence            579999999999976532 1234578887  111  1    1111                      4456999999999


Q ss_pred             CCeEEEEEEEc
Q psy14542         70 DAGMYQCHVSA   80 (371)
Q Consensus        70 d~G~Y~C~~~~   80 (371)
                      |++.|.|....
T Consensus        90 DtAvYYCAr~~  100 (123)
T d1mqkh_          90 DTAMYYCVRHE  100 (123)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cccceeEEecC
Confidence            99999997654

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.55  E-value=0.00013  Score=48.26  Aligned_cols=61  Identities=21%  Similarity=0.375  Sum_probs=41.7

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEe--CCE--E----EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLK--DGL--V----LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~--~~~--~----~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|.++.. .....+.|+|  .|+  +    +...                      ....|.|.+++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~e   89 (118)
T d2fbjh1          10 GLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCC
Confidence            679999999999976532 1223477876  111  1    1100                      3456999999999


Q ss_pred             CCeEEEEEEEcC
Q psy14542         70 DAGMYQCHVSAD   81 (371)
Q Consensus        70 d~G~Y~C~~~~~   81 (371)
                      |++.|.|.....
T Consensus        90 DtAvYYCAr~~~  101 (118)
T d2fbjh1          90 DTALYYCARLHY  101 (118)
T ss_dssp             GCEEEEEEEEET
T ss_pred             cceEEEeeEecC
Confidence            999999986543

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.55  E-value=8.6e-06  Score=53.05  Aligned_cols=65  Identities=23%  Similarity=0.559  Sum_probs=44.4

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeC--Cccc------------ccCCceEE------ecceEEEeccCCCCCeEEEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQ--DSPV------------EESDRIQR------IGSSLSISHVEESDSGVWNCVA  293 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~a  293 (371)
                      |.+|++++|.|.... ....+.|++.  |+.+            ...+++..      ....|.|.+++.+|+|.|.|.+
T Consensus         5 V~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~   83 (96)
T d1ymmd1           5 IQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFCAT   83 (96)
T ss_dssp             CSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEEEE
T ss_pred             ECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeEeE
Confidence            889999999998753 3346999972  2211            11122221      1136999999999999999998


Q ss_pred             EcCCCC
Q psy14542        294 NNSEGQ  299 (371)
Q Consensus       294 ~n~~g~  299 (371)
                      ....|.
T Consensus        84 ~~~~g~   89 (96)
T d1ymmd1          84 DTTSGT   89 (96)
T ss_dssp             EETTSC
T ss_pred             ecCCCC
Confidence            766554

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.55  E-value=6.7e-05  Score=49.35  Aligned_cols=62  Identities=13%  Similarity=0.218  Sum_probs=42.1

Q ss_pred             cCCeEEEEEEeecC-CC-CceEEEeCCcccccCC---------ceEEecceEEEeccCCCCCeEEEEEEEcCC
Q psy14542        236 KDESVILPCSAQGN-PL-PTIKWYKQDSPVEESD---------RIQRIGSSLSISHVEESDSGVWNCVANNSE  297 (371)
Q Consensus       236 ~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  297 (371)
                      .++.++|.|.+.|+ |. ..|+|.+||.......         ......+.|.|..-..+....|+|.+.+..
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            46789999999984 43 5799999987543221         011223457776666566778999998765

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.54  E-value=0.00013  Score=48.66  Aligned_cols=59  Identities=19%  Similarity=0.384  Sum_probs=41.1

Q ss_pred             EEEeccCcEEEEEEecCCC-CCCeeEEEe----CCEE----EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPKR-LSSAKAWLK----DGLV----LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~----~~~~----~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|.++... ....+.|+|    .+.+    +...                      ....|.|.+++.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~e   89 (124)
T d2b1hh1          10 EVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKPS   89 (124)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeeccccc
Confidence            6789999999999765422 223478887    1111    1111                      4467999999999


Q ss_pred             CCeEEEEEEE
Q psy14542         70 DAGMYQCHVS   79 (371)
Q Consensus        70 d~G~Y~C~~~   79 (371)
                      |++.|.|...
T Consensus        90 DTA~YYCAR~   99 (124)
T d2b1hh1          90 DTALYYCARL   99 (124)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeec
Confidence            9999999643

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.54  E-value=0.00023  Score=47.63  Aligned_cols=61  Identities=18%  Similarity=0.372  Sum_probs=41.4

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeC--Ccccc---------------cCCceE-----EecceEEEeccCCCCCeEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQ--DSPVE---------------ESDRIQ-----RIGSSLSISHVEESDSGVWNC  291 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~~---------------~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C  291 (371)
                      +.+|++++|.|.... ....+.|++.  |+.+.               ...++.     ..+..|.|.++..+|+|.|.|
T Consensus        11 ~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsavYyC   89 (112)
T d2bnub1          11 LKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSVYFC   89 (112)
T ss_dssp             EETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGCEEEEE
T ss_pred             ECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHCEEEEE
Confidence            889999999998753 3456999972  22110               001111     112369999999999999999


Q ss_pred             EEEc
Q psy14542        292 VANN  295 (371)
Q Consensus       292 ~a~n  295 (371)
                      .+..
T Consensus        90 A~~~   93 (112)
T d2bnub1          90 ASSY   93 (112)
T ss_dssp             EEEC
T ss_pred             eecC
Confidence            8764

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=0.00013  Score=45.04  Aligned_cols=67  Identities=21%  Similarity=0.435  Sum_probs=46.6

Q ss_pred             ecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCC-CCCeEEEEEEEcCCCCceeEEEEEEec
Q psy14542        235 KKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEE-SDSGVWNCVANNSEGQDKMQLFIQYAH  310 (371)
Q Consensus       235 ~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~~l~v~~  310 (371)
                      ..|.+|+|+|...+.  -.|.|.+++..++...     +..|.+.+... +++|-|.|...+  +.....+.|..++
T Consensus        12 ISGTtV~LTCP~~~~--~~I~Wkkn~~~i~g~~-----~~~L~L~~FSE~e~SGyY~C~~~~--~~~~~~LYLKARV   79 (100)
T d1jbja2          12 ISGTSVELTCPLDSD--ENLKWEKNGQELPQKH-----DKHLVLQDFSEVEDSGYYVCYTPA--SNKNTYLYLKARV   79 (100)
T ss_dssp             EETTEEEEECSSCCC--TTCEEEETTEEECSCC-----CSEEEEESCCTTTSCEEEEEECSS--CCCCCCEEECCCC
T ss_pred             EeCCEEEEECCCCCC--CceEEeeccccCCCCC-----CcEEEEccccccccCcceEEecCC--CCcceEEEEEEEE
Confidence            458999999986543  4799999998776542     34688888654 799999996443  2233455555443

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.54  E-value=0.00011  Score=49.44  Aligned_cols=62  Identities=21%  Similarity=0.475  Sum_probs=42.4

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEe--CCcccc---------------cCCceEE--e---cceEEEeccCCCCCeEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYK--QDSPVE---------------ESDRIQR--I---GSSLSISHVEESDSGVWNC  291 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~--~~~~~~---------------~~~~~~~--~---~~~l~i~~~~~~d~G~Y~C  291 (371)
                      +.+|++++|.|...+. ...+.|++  .++.+.               ...++..  .   ...|.|.++..+|+|.|.|
T Consensus        11 ~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   89 (113)
T d2ntsp1          11 KTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSALYLC   89 (113)
T ss_dssp             EETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEEEEE
T ss_pred             ECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccceeeee
Confidence            8999999999986543 35789997  232110               0111211  1   2369999999999999999


Q ss_pred             EEEcC
Q psy14542        292 VANNS  296 (371)
Q Consensus       292 ~a~n~  296 (371)
                      .+...
T Consensus        90 A~~~~   94 (113)
T d2ntsp1          90 ASSLA   94 (113)
T ss_dssp             EEESS
T ss_pred             eeeCC
Confidence            88643

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.53  E-value=3.4e-05  Score=50.20  Aligned_cols=72  Identities=18%  Similarity=0.153  Sum_probs=41.4

Q ss_pred             CCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccce
Q psy14542        111 GHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRS  189 (371)
Q Consensus       111 g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~  189 (371)
                      ...++|.|.+.++ |....|+|.+++..+.................+|.|.         ..  +.|.   +...+ ...
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~---------~~--s~l~---v~~~~-~~~   78 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQ---------KH--IDVY---VDGGL-EHV   78 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEE---------EE--EEEE---ECTTC-GGG
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEE---------EE--EEEE---ECCCC-CCE
Confidence            4578999999887 4458999999876543221000001112223334332         21  3343   34556 778


Q ss_pred             eEEEeecc
Q psy14542        190 YQCRGVNK  197 (371)
Q Consensus       190 y~C~~~~~  197 (371)
                      |+|.+.+.
T Consensus        79 ytC~V~H~   86 (98)
T d1u58a1          79 YSCRVKGI   86 (98)
T ss_dssp             EEEEEEEG
T ss_pred             EEEEEEeC
Confidence            99999875

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.53  E-value=0.0004  Score=46.82  Aligned_cols=59  Identities=15%  Similarity=0.355  Sum_probs=39.5

Q ss_pred             EEEeccCcEEEEEEecCCC---CCCeeEEEeC---------------CEEE-eeC-------------CeeEEEEccCCc
Q psy14542         21 VVVDVGHRIELHCRVSPKR---LSSAKAWLKD---------------GLVL-RRN-------------SDEVLVLDRVQR   68 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~---~~~~~~W~~~---------------~~~~-~~~-------------~~~~l~i~~~~~   68 (371)
                      ..+.+|++++|.|.++...   ....+.|+|-               +... ...             ....|.|.+++.
T Consensus        10 ~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~   89 (126)
T d1etzb1          10 GILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDT   89 (126)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccc
Confidence            4688999999999655321   1224578751               1100 000             346799999999


Q ss_pred             CCCeEEEEEEE
Q psy14542         69 EDAGMYQCHVS   79 (371)
Q Consensus        69 ~d~G~Y~C~~~   79 (371)
                      +|++.|.|...
T Consensus        90 eDtAvYyCAr~  100 (126)
T d1etzb1          90 SDTATYHCARR  100 (126)
T ss_dssp             GGCEEEEEEEE
T ss_pred             cccceEEEEEe
Confidence            99999999853

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.53  E-value=3.2e-05  Score=50.98  Aligned_cols=74  Identities=9%  Similarity=0.107  Sum_probs=46.3

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCC-CeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGM   73 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~   73 (371)
                      ..|.|.+.++. ......+.++|.|.+...+|. ..+.|++||......              ..+.|.|..-.......
T Consensus         3 ~~P~V~i~~p~-~~~~~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~   81 (102)
T d1i1ca2           3 RGPQVYTMAPP-KEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNT   81 (102)
T ss_dssp             BCCEEEEECCC-GGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCC
T ss_pred             cCCEEEEECCC-HHHhcCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCE
Confidence            35667776554 223346789999977766554 679999998865432              12234444433333447


Q ss_pred             EEEEEEcCCC
Q psy14542         74 YQCHVSADDD   83 (371)
Q Consensus        74 Y~C~~~~~~~   83 (371)
                      |+|.+.....
T Consensus        82 ytC~V~H~~~   91 (102)
T d1i1ca2          82 FTCSVLHEGL   91 (102)
T ss_dssp             EEEEEECTTS
T ss_pred             EEEEEEeCCC
Confidence            9999987543

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.52  E-value=0.00027  Score=47.40  Aligned_cols=62  Identities=16%  Similarity=0.349  Sum_probs=41.5

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeC--Ccccc---------------cCCceEE-----ecceEEEeccCCCCCeEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQ--DSPVE---------------ESDRIQR-----IGSSLSISHVEESDSGVWNC  291 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~~---------------~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C  291 (371)
                      +.+|++++|.|... .....+.|++.  |..+.               ...++..     ....|.|.++..+|+|.|.|
T Consensus        12 ~~~G~~v~l~C~~~-~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyC   90 (113)
T d1j8he1          12 KRTGEKVFLECVQD-MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQTSMYLC   90 (113)
T ss_dssp             EETTCCEEECEEES-SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGGCEEEEE
T ss_pred             ECCCCCEEEEEEEc-CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCCcccEEe
Confidence            88999999999864 23456899872  21110               0011111     12369999999999999999


Q ss_pred             EEEcC
Q psy14542        292 VANNS  296 (371)
Q Consensus       292 ~a~n~  296 (371)
                      .+...
T Consensus        91 a~~~~   95 (113)
T d1j8he1          91 ASSST   95 (113)
T ss_dssp             EEECT
T ss_pred             eEccC
Confidence            98743

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.52  E-value=0.00021  Score=48.52  Aligned_cols=60  Identities=25%  Similarity=0.438  Sum_probs=40.7

Q ss_pred             EEEeccCcEEEEEEecCCC---CCCeeEEEeC--C---EEEee-----------C-------------CeeEEEEccCCc
Q psy14542         21 VVVDVGHRIELHCRVSPKR---LSSAKAWLKD--G---LVLRR-----------N-------------SDEVLVLDRVQR   68 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~---~~~~~~W~~~--~---~~~~~-----------~-------------~~~~l~i~~~~~   68 (371)
                      ..+.+|++++|.|.++...   ...-+.|+|-  |   +-+..           .             ....|.|.+++.
T Consensus        10 ~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~   89 (132)
T d1tjgh1          10 PLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSP   89 (132)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCc
Confidence            4799999999999755322   1224789861  1   11100           0             345699999999


Q ss_pred             CCCeEEEEEEEc
Q psy14542         69 EDAGMYQCHVSA   80 (371)
Q Consensus        69 ~d~G~Y~C~~~~   80 (371)
                      +|++.|.|....
T Consensus        90 eDtAvYYCAr~~  101 (132)
T d1tjgh1          90 VDTATYFCAHRR  101 (132)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceEEEEEEec
Confidence            999999998653

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.51  E-value=0.00012  Score=48.65  Aligned_cols=59  Identities=22%  Similarity=0.429  Sum_probs=41.3

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEeC--CE--E----EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKD--GL--V----LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~--~~--~----~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|.++.. .....+.|+|-  |+  +    +...                      ....|.|.+++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~e   89 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPE   89 (121)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeecccc
Confidence            578999999999976532 23445788871  11  1    1110                      3456999999999


Q ss_pred             CCeEEEEEEE
Q psy14542         70 DAGMYQCHVS   79 (371)
Q Consensus        70 d~G~Y~C~~~   79 (371)
                      |++.|.|...
T Consensus        90 DtAvYYCAr~   99 (121)
T d2p49b1          90 DTATYYCAAG   99 (121)
T ss_dssp             GCEEEEEEES
T ss_pred             ceeEEeeecc
Confidence            9999999864

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.51  E-value=0.00037  Score=46.48  Aligned_cols=61  Identities=25%  Similarity=0.516  Sum_probs=41.7

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeC--Cccc----------------ccCCceEEe-----cceEEEeccCCCCCeEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQ--DSPV----------------EESDRIQRI-----GSSLSISHVEESDSGVWN  290 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~----------------~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~  290 (371)
                      +.+|++++|.|...+ ....+.|++.  |..+                ....++...     ...|.|.++..+|+|.|.
T Consensus        11 ~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa~Yy   89 (111)
T d2esve1          11 IEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELEDSGVYF   89 (111)
T ss_dssp             EETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGGCEEEE
T ss_pred             ECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCCCceEE
Confidence            899999999998543 2357999973  2211                011222211     136999999999999999


Q ss_pred             EEEEc
Q psy14542        291 CVANN  295 (371)
Q Consensus       291 C~a~n  295 (371)
                      |.+..
T Consensus        90 Ca~~~   94 (111)
T d2esve1          90 CASSQ   94 (111)
T ss_dssp             EEEES
T ss_pred             EeeeC
Confidence            98764

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.00027  Score=46.51  Aligned_cols=81  Identities=10%  Similarity=0.034  Sum_probs=46.0

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC--------------CeeEEEEccCCcC--CC
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN--------------SDEVLVLDRVQRE--DA   71 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~--d~   71 (371)
                      .+|.|...++........+.++|.|.+....| ...|+|.++|..+...              ..+.|.|....-.  ..
T Consensus         4 ~~P~V~~l~p~~~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~   83 (105)
T d1dn0b2           4 SAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTD   83 (105)
T ss_dssp             BCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CC
T ss_pred             cCCeEEeECCCccccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCC
Confidence            35666554433134455688999997766565 4679999988765543              2234444433321  12


Q ss_pred             eEEEEEEEcCCCCeEEEE
Q psy14542         72 GMYQCHVSADDDSAQMSA   89 (371)
Q Consensus        72 G~Y~C~~~~~~~~~~~~~   89 (371)
                      ..|+|.+.+........+
T Consensus        84 ~~ytC~V~H~~~~~~~~v  101 (105)
T d1dn0b2          84 EHVVCKVQHPNGNKEKNV  101 (105)
T ss_dssp             CEEEEEEECTTCCEEEEE
T ss_pred             CEEEEEEEECCCCEEeEE
Confidence            379999998765544333

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.51  E-value=0.0004  Score=46.69  Aligned_cols=60  Identities=20%  Similarity=0.385  Sum_probs=42.2

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEe--CC--EE----EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLK--DG--LV----LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~--~~--~~----~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|+++.. .....+.|+|  .|  .+    +...                      ....|.|.+++.+
T Consensus         9 ~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~e   88 (130)
T d1rhhb1           9 EVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRSD   88 (130)
T ss_dssp             EEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCCC
Confidence            678999999999977632 2334588887  11  11    1110                      4457999999999


Q ss_pred             CCeEEEEEEEc
Q psy14542         70 DAGMYQCHVSA   80 (371)
Q Consensus        70 d~G~Y~C~~~~   80 (371)
                      |++.|.|....
T Consensus        89 DtAvYyCAr~~   99 (130)
T d1rhhb1          89 DTAVYYCARDF   99 (130)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CcEEEEEEeec
Confidence            99999998653

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.49  E-value=0.00016  Score=47.53  Aligned_cols=64  Identities=14%  Similarity=0.223  Sum_probs=42.6

Q ss_pred             cCCeEEEEEEeecCC-C-CceEEEeCCcccccCCc---e------EEecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        236 KDESVILPCSAQGNP-L-PTIKWYKQDSPVEESDR---I------QRIGSSLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       236 ~g~~~~l~C~~~~~p-~-~~v~W~~~~~~~~~~~~---~------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      ..+.++|.|.+.++. . ..|+|.++|........   .      ....+.|.|..........|+|.|.+....
T Consensus        18 ~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~~~   92 (102)
T d1i1ca2          18 TQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE   92 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             cCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCCCC
Confidence            356789999998853 3 46999999986543210   1      112235777766666677899999886443

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.49  E-value=0.00018  Score=48.25  Aligned_cols=61  Identities=18%  Similarity=0.395  Sum_probs=41.4

Q ss_pred             cEEEeccCcEEEEEEecCCC-CCCeeEEEeC----------------CEEE-eeC-------------CeeEEEEccCCc
Q psy14542         20 QVVVDVGHRIELHCRVSPKR-LSSAKAWLKD----------------GLVL-RRN-------------SDEVLVLDRVQR   68 (371)
Q Consensus        20 ~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~----------------~~~~-~~~-------------~~~~l~i~~~~~   68 (371)
                      +..+.+|+++.|.|+++... ....+.|+|-                +... ...             ....|.|.+++.
T Consensus         9 ~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~   88 (128)
T d2nxyd1           9 AEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRS   88 (128)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccc
Confidence            36799999999999765422 1234677651                1110 000             456799999999


Q ss_pred             CCCeEEEEEEEc
Q psy14542         69 EDAGMYQCHVSA   80 (371)
Q Consensus        69 ~d~G~Y~C~~~~   80 (371)
                      +|++.|.|....
T Consensus        89 eDTA~YYCAr~~  100 (128)
T d2nxyd1          89 DDTAVYFCAGVY  100 (128)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             cCceEEEEeEEe
Confidence            999999998653

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.49  E-value=3.6e-05  Score=50.73  Aligned_cols=72  Identities=14%  Similarity=0.205  Sum_probs=44.5

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeEE
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGMY   74 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~Y   74 (371)
                      +|+|.+.+.. .....++.++|.|.+...+| ...|.|.+||......              ..+.|.|..-.-.....|
T Consensus         4 ~P~V~l~~ps-~~~~~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~y   82 (102)
T d1igtb4           4 APQVYVLPPP-EEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSY   82 (102)
T ss_dssp             CCEEEEECCC-GGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCE
T ss_pred             CCEEEEECCC-HHHhcCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEE
Confidence            4567766554 22335788999997666555 4679999998764322              223344443322234479


Q ss_pred             EEEEEcCC
Q psy14542         75 QCHVSADD   82 (371)
Q Consensus        75 ~C~~~~~~   82 (371)
                      +|.+.+..
T Consensus        83 tC~V~H~~   90 (102)
T d1igtb4          83 SCSVVHEG   90 (102)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEeCC
Confidence            99998754

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.48  E-value=0.00087  Score=44.17  Aligned_cols=85  Identities=24%  Similarity=0.325  Sum_probs=48.5

Q ss_pred             CCceeeecCCcEEEEEEecCCCC-CceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----c
Q psy14542        103 SNQVVVDVGHRIELHCRVSPKRL-SSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----G  174 (371)
Q Consensus       103 ~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~  174 (371)
                      .....+.+|++++|.|.+.+... .-.+.|+|.  |+.+    .....+..   .....+.-....+|+.+..+     .
T Consensus         6 sg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkgl----ewl~~i~~---~~~~~~y~~~~kgRftiS~D~s~~t~   78 (117)
T d1um5h1           6 SGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGL----EWIGYIYP---YNGGTRYNEKFRGKATLTSDKSSNTA   78 (117)
T ss_dssp             CCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCE----EEEEEEET---TTTEEEECGGGTTCEEEEEETTTTEE
T ss_pred             ECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccc----eeeeecCC---ccCccccccceeeeEEEEeccCceeE
Confidence            33445589999999999988643 257899873  2211    11111111   01111111111234444322     3


Q ss_pred             eEEEEEeecCCccceeEEEee
Q psy14542        175 ELIIHQVDESDRYRSYQCRGV  195 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~~  195 (371)
                      .|.|.+++.+| ++.|.|...
T Consensus        79 ~L~m~sL~~eD-tAvYYCAr~   98 (117)
T d1um5h1          79 YLELSSLTSED-SAVYYCARS   98 (117)
T ss_dssp             EEEECSCCGGG-CEEEEEEEE
T ss_pred             eecccccCCCc-ceEEEEeec
Confidence            58999999999 999999643

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.48  E-value=1.2e-05  Score=53.31  Aligned_cols=65  Identities=14%  Similarity=0.254  Sum_probs=43.1

Q ss_pred             cCCeEEEEEEeecC-CC-CceEEEeCCcccccCCce---E------EecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542        236 KDESVILPCSAQGN-PL-PTIKWYKQDSPVEESDRI---Q------RIGSSLSISHVEESDSGVWNCVANNSEGQD  300 (371)
Q Consensus       236 ~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~~---~------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  300 (371)
                      .+..++|.|.+.++ |. ..|.|.+||..+......   .      ...+.|.|......+...|+|.+.+.....
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~~~   94 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETV   94 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTC
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCCcE
Confidence            35678999999984 43 479999999866533111   1      112345555555566678999999876543

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.48  E-value=0.00049  Score=46.68  Aligned_cols=62  Identities=21%  Similarity=0.422  Sum_probs=43.1

Q ss_pred             eecCCeEEEEEEeecCC--CCceEEEeC--Cccc-----------------ccCCceEEe--c----ceEEEeccCCCCC
Q psy14542        234 VKKDESVILPCSAQGNP--LPTIKWYKQ--DSPV-----------------EESDRIQRI--G----SSLSISHVEESDS  286 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p--~~~v~W~~~--~~~~-----------------~~~~~~~~~--~----~~l~i~~~~~~d~  286 (371)
                      ..+|++++|.|.+.|..  ...+.|++.  |+.+                 ....|+...  .    ..|.|.++..+|+
T Consensus        13 ~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~~Ds   92 (123)
T d1hxmb1          13 KTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQDI   92 (123)
T ss_dssp             EETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccccccC
Confidence            77899999999998753  345899872  2111                 012344321  1    2599999999999


Q ss_pred             eEEEEEEEc
Q psy14542        287 GVWNCVANN  295 (371)
Q Consensus       287 G~Y~C~a~n  295 (371)
                      |.|.|.+..
T Consensus        93 a~YyCA~~~  101 (123)
T d1hxmb1          93 ATYYCALWE  101 (123)
T ss_dssp             EEEEEEEEE
T ss_pred             cEEEEeeeC
Confidence            999998754

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.48  E-value=0.00025  Score=47.38  Aligned_cols=59  Identities=24%  Similarity=0.470  Sum_probs=41.0

Q ss_pred             EEEeccCcEEEEEEecCCC-CCCeeEEEeC----CEE----EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPKR-LSSAKAWLKD----GLV----LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~----~~~----~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|+++... ....+.|+|.    +.+    +...                      ....|.|.+++.+
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~e   89 (126)
T d1dfbh1          10 GLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAE   89 (126)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccC
Confidence            5799999999999765321 2335788871    111    1100                      3457999999999


Q ss_pred             CCeEEEEEEE
Q psy14542         70 DAGMYQCHVS   79 (371)
Q Consensus        70 d~G~Y~C~~~   79 (371)
                      |++.|.|...
T Consensus        90 DtavYYCAr~   99 (126)
T d1dfbh1          90 DMALYYCVKG   99 (126)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEEec
Confidence            9999999754

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.48  E-value=0.00016  Score=48.48  Aligned_cols=59  Identities=25%  Similarity=0.424  Sum_probs=41.5

Q ss_pred             EEEeccCcEEEEEEecCCCC--CCeeEEEe--CCEEE------eeC---------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPKRL--SSAKAWLK--DGLVL------RRN---------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~~--~~~~~W~~--~~~~~------~~~---------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|.++...-  ...+.|+|  -|+.+      ...                     ....|.|.+++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~e   89 (127)
T d3cx5j1          10 GLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTE   89 (127)
T ss_dssp             SEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceeccccc
Confidence            46899999999997654322  24578987  12111      100                     4567999999999


Q ss_pred             CCeEEEEEEE
Q psy14542         70 DAGMYQCHVS   79 (371)
Q Consensus        70 d~G~Y~C~~~   79 (371)
                      |++.|.|...
T Consensus        90 DtAvYyCAr~   99 (127)
T d3cx5j1          90 DTATYYCARS   99 (127)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEeeee
Confidence            9999999853

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.48  E-value=0.00034  Score=46.64  Aligned_cols=60  Identities=22%  Similarity=0.410  Sum_probs=41.3

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEeC----CEE----EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKD----GLV----LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~----~~~----~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|+++.. .....+.|+|-    +.+    +...                      ....|.|++++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~e   89 (122)
T d1bz7b1          10 GLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSE   89 (122)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeeccc
Confidence            578999999999976532 12344788871    111    1100                      4467999999999


Q ss_pred             CCeEEEEEEEc
Q psy14542         70 DAGMYQCHVSA   80 (371)
Q Consensus        70 d~G~Y~C~~~~   80 (371)
                      |++.|.|....
T Consensus        90 DTAvYYCAr~~  100 (122)
T d1bz7b1          90 DTAIYYCTRGG  100 (122)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CceEEEeecCC
Confidence            99999997653

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.48  E-value=0.0003  Score=46.98  Aligned_cols=84  Identities=15%  Similarity=0.274  Sum_probs=46.7

Q ss_pred             ceeeecCCcEEEEEEecCCCC---CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceE
Q psy14542        105 QVVVDVGHRIELHCRVSPKRL---SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGEL  176 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l  176 (371)
                      ...+.+|++++|.|.+.|...   ...+.|++...  .....+...+..-.   ...|. ....+++.+..     ...|
T Consensus         9 ~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~P--g~~le~l~~i~~~~---~~~~~-~~~~gRft~s~d~s~~~~~L   82 (120)
T d2agjh1           9 PTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPP--GKALEFLAFIYWND---AKRYN-PSLQSRLTITKDASKKQVVL   82 (120)
T ss_dssp             CSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECT--TSCCEEEEEEEGGG---CEEEC-GGGCSSEEEECCTTTTEEEE
T ss_pred             CeeECCCCCEEEEEEEcccCccCCCCeEeeccccc--cccceeeecccCCc---ccccc-hhhccccceecccccceeee
Confidence            344578999999999876532   13578997311  11112222222111   00000 00023444332     1469


Q ss_pred             EEEEeecCCccceeEEEee
Q psy14542        177 IIHQVDESDRYRSYQCRGV  195 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~  195 (371)
                      .|.+++.+| ++.|.|...
T Consensus        83 ~i~~l~~eD-sAvYyCAr~  100 (120)
T d2agjh1          83 TLTNLDPVD-TATYYCART  100 (120)
T ss_dssp             EEESCCGGG-CEEEEEEEE
T ss_pred             eEEeeeecc-ceEEeeEec
Confidence            999999999 999999644

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.47  E-value=0.0012  Score=43.97  Aligned_cols=86  Identities=14%  Similarity=0.302  Sum_probs=47.8

Q ss_pred             Cceee-ecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeE--eccceEEEEE
Q psy14542        104 NQVVV-DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHM--LSSGELIIHQ  180 (371)
Q Consensus       104 ~~~~~-~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~--~~~~~l~i~~  180 (371)
                      |...+ .+|++++|.|....... ..+.||+...  .....+.+..........+    ....+++..  ..+..|.|..
T Consensus         8 P~~~~~~~G~~vtL~C~~~~~~~-~~~~WYrQ~~--g~~~~~l~~~~~~~~~~~~----~~~~~~f~~~~~~~~~l~l~~   80 (112)
T d1fo0b_           8 PRWRLVPRGQAVNLRCILKNSQY-PWMSWYQQDL--QKQLQWLFTLRSPGDKEVK----SLPGADYLATRVTDTELRLQV   80 (112)
T ss_dssp             CSEEECCTTCCEEEEEEESCTTC-CEEEEEEECT--TCCEEEEEECCSTTCEEEE----EETTEEEEEEEEETTEEEEEE
T ss_pred             CCeEEECCCCCEEEEEEEecCCC-CcEEEEeECC--CCCccccceeccccccccc----cccccccccccccccEEEEec
Confidence            33333 88999999999876554 6799998421  0011111111111111111    011122222  2335789999


Q ss_pred             eecCCccceeEEEeecc
Q psy14542        181 VDESDRYRSYQCRGVNK  197 (371)
Q Consensus       181 ~~~~d~~g~y~C~~~~~  197 (371)
                      +..+| ++.|.|.+...
T Consensus        81 ~~~~d-sa~Y~Ca~~~~   96 (112)
T d1fo0b_          81 ANMSQ-GRTLYCTCSAD   96 (112)
T ss_dssp             ESCCS-CEEEEEEEESS
T ss_pred             CCccC-CccEEEEEecC
Confidence            99999 99999986543

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.47  E-value=0.00022  Score=48.01  Aligned_cols=60  Identities=23%  Similarity=0.450  Sum_probs=41.7

Q ss_pred             EEEeccCcEEEEEEecCCC-CCCeeEEEeC--C--EE----EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPKR-LSSAKAWLKD--G--LV----LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~--~--~~----~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|+++... ....+.|+|-  |  .+    +...                      ....|.|.+++.+
T Consensus        10 ~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~e   89 (135)
T d1ieha_          10 GLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSE   89 (135)
T ss_dssp             CEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSS
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcc
Confidence            4789999999999765422 2345888861  1  11    1110                      3457999999999


Q ss_pred             CCeEEEEEEEc
Q psy14542         70 DAGMYQCHVSA   80 (371)
Q Consensus        70 d~G~Y~C~~~~   80 (371)
                      |++.|.|....
T Consensus        90 DTAvYYCAr~~  100 (135)
T d1ieha_          90 DTAVYYCAKYS  100 (135)
T ss_dssp             SCEEEEEEEBS
T ss_pred             cceeeEEEEec
Confidence            99999997654

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.46  E-value=0.00017  Score=46.44  Aligned_cols=57  Identities=19%  Similarity=0.406  Sum_probs=36.4

Q ss_pred             cCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC----------CeeE---EEEccCCcCCCeEEEEEEEcCC
Q psy14542         26 GHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN----------SDEV---LVLDRVQREDAGMYQCHVSADD   82 (371)
Q Consensus        26 G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~----------~~~~---l~i~~~~~~d~G~Y~C~~~~~~   82 (371)
                      ++.++|.|.+...+| ...+.|+++|..+...          .+++   ...-.+..++...|+|.+...+
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~ytC~V~H~~   85 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSG   85 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEEETT
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEEEEEEECC
Confidence            467899997776555 4579999999877643          1111   1112233445567999998653

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.46  E-value=0.00011  Score=48.74  Aligned_cols=59  Identities=19%  Similarity=0.420  Sum_probs=41.3

Q ss_pred             EEEeccCcEEEEEEecCCC-CCCeeEEEe--CCEE------Eee-----------C-------------CeeEEEEccCC
Q psy14542         21 VVVDVGHRIELHCRVSPKR-LSSAKAWLK--DGLV------LRR-----------N-------------SDEVLVLDRVQ   67 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~--~~~~------~~~-----------~-------------~~~~l~i~~~~   67 (371)
                      ..+.+|+++.|.|+++... ....+.|+|  -|+.      +..           .             ....|.|.+++
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~L~   89 (121)
T d1nfdf1          10 DLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRLR   89 (121)
T ss_dssp             EEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEESCC
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceecccC
Confidence            6799999999999765432 123478887  1211      110           0             44569999999


Q ss_pred             cCCCeEEEEEEE
Q psy14542         68 REDAGMYQCHVS   79 (371)
Q Consensus        68 ~~d~G~Y~C~~~   79 (371)
                      .+|++.|.|...
T Consensus        90 ~eDTAvYYCAr~  101 (121)
T d1nfdf1          90 VDDTAIYYCTRA  101 (121)
T ss_dssp             GGGCEECEEEEE
T ss_pred             CCcceEEEEecc
Confidence            999999999754

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.46  E-value=6e-06  Score=54.82  Aligned_cols=75  Identities=19%  Similarity=0.284  Sum_probs=46.8

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC--------Ce------eEEEEccCCcCCCeE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN--------SD------EVLVLDRVQREDAGM   73 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~--------~~------~~l~i~~~~~~d~G~   73 (371)
                      .+|.|.+.+.... -..++.++|.|.+...+| ...|.|++||..+...        .+      +.|.|......+...
T Consensus         4 ~~P~V~v~~ps~~-~~~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~   82 (104)
T d1nfde2           4 SSPKVTVFPPSPE-ELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNR   82 (104)
T ss_dssp             BCCEEECCCCCHH-HHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSC
T ss_pred             cCCEEEEECCCHH-HHcCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCE
Confidence            3567777665512 234677999996666555 4589999999988754        11      122222222234457


Q ss_pred             EEEEEEcCCCC
Q psy14542         74 YQCHVSADDDS   84 (371)
Q Consensus        74 Y~C~~~~~~~~   84 (371)
                      |+|.+.+....
T Consensus        83 ytC~V~H~~~~   93 (104)
T d1nfde2          83 VSCQVTHEGET   93 (104)
T ss_dssp             EEEEEECTTTT
T ss_pred             EEEEEEECCCc
Confidence            99999876543

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.45  E-value=0.00033  Score=46.82  Aligned_cols=59  Identities=25%  Similarity=0.478  Sum_probs=41.8

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEeC--C--EE----EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKD--G--LV----LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~--~--~~----~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      -.+.+|+++.|.|+++.. .....+.|+|.  |  .+    +...                      ....|.|.+++.+
T Consensus         9 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~e   88 (124)
T d1zvya1           9 GSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSE   88 (124)
T ss_dssp             EECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCC
Confidence            578999999999976532 23445888871  1  10    1110                      4567999999999


Q ss_pred             CCeEEEEEEE
Q psy14542         70 DAGMYQCHVS   79 (371)
Q Consensus        70 d~G~Y~C~~~   79 (371)
                      |++.|.|...
T Consensus        89 DtAvYYCAr~   98 (124)
T d1zvya1          89 DTAIYTCGAT   98 (124)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEeec
Confidence            9999999864

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.45  E-value=0.00019  Score=48.13  Aligned_cols=68  Identities=21%  Similarity=0.411  Sum_probs=44.2

Q ss_pred             eeeeeeeecCCeEEEEEEeecCCCCceEEEeCCc--ccc---------------cCCceE--E---ecceEEEeccCCCC
Q psy14542        228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDS--PVE---------------ESDRIQ--R---IGSSLSISHVEESD  285 (371)
Q Consensus       228 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~--~~~---------------~~~~~~--~---~~~~l~i~~~~~~d  285 (371)
                      |.... +.+|+.++|.|..... ...+.|++...  .+.               ...++.  .   ....|.|.++..+|
T Consensus         8 P~~~~-~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   85 (113)
T d1nfdb1           8 PRHII-KEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELED   85 (113)
T ss_dssp             CSEEE-EETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGG
T ss_pred             CCEEE-EeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCC
Confidence            33344 8899999999986532 35699997422  110               011221  1   12369999999999


Q ss_pred             CeEEEEEEEcCC
Q psy14542        286 SGVWNCVANNSE  297 (371)
Q Consensus       286 ~G~Y~C~a~n~~  297 (371)
                      +|.|.|.+....
T Consensus        86 sa~YyCa~~~~~   97 (113)
T d1nfdb1          86 SAMYFCASSLRW   97 (113)
T ss_dssp             CEEECEEEESSS
T ss_pred             ceeEEEEeecCC
Confidence            999999876443

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.45  E-value=0.00015  Score=48.54  Aligned_cols=58  Identities=17%  Similarity=0.359  Sum_probs=40.5

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEe--CCE------EEeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLK--DGL------VLRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~--~~~------~~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|.++.. .....+.|+|  .|+      .+...                      ....|.|.+++.+
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~e   89 (127)
T d1n0xh1          10 EVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSA   89 (127)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCCC
Confidence            689999999999976532 1233478876  111      11100                      4467999999999


Q ss_pred             CCeEEEEEE
Q psy14542         70 DAGMYQCHV   78 (371)
Q Consensus        70 d~G~Y~C~~   78 (371)
                      |++.|.|.-
T Consensus        90 DtAvYYCAR   98 (127)
T d1n0xh1          90 DTAVYYCAR   98 (127)
T ss_dssp             GCEEEEEEE
T ss_pred             CceEEEEEe
Confidence            999999974

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.00025  Score=47.95  Aligned_cols=62  Identities=15%  Similarity=0.184  Sum_probs=41.0

Q ss_pred             eecCCeEEEEEEeecCCCC---ceEEEeCCc--ccc-------------cCCce------EEecceEEEeccCCCCCeEE
Q psy14542        234 VKKDESVILPCSAQGNPLP---TIKWYKQDS--PVE-------------ESDRI------QRIGSSLSISHVEESDSGVW  289 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~---~v~W~~~~~--~~~-------------~~~~~------~~~~~~l~i~~~~~~d~G~Y  289 (371)
                      +..|+.++|.|........   .+.|+|...  .+.             ...+.      ......|.|.++..+|+|.|
T Consensus        11 ~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   90 (118)
T d1i8lc_          11 ASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLY   90 (118)
T ss_dssp             CCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGGCEEE
T ss_pred             EeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCCCEEE
Confidence            7889999999997543322   488997422  110             00000      01123699999999999999


Q ss_pred             EEEEEc
Q psy14542        290 NCVANN  295 (371)
Q Consensus       290 ~C~a~n  295 (371)
                      .|.+..
T Consensus        91 yCa~~~   96 (118)
T d1i8lc_          91 ICKVEL   96 (118)
T ss_dssp             EEEEEE
T ss_pred             EEeEec
Confidence            998764

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.44  E-value=0.00013  Score=48.54  Aligned_cols=59  Identities=24%  Similarity=0.426  Sum_probs=40.7

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEeC--CE--E----EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKD--GL--V----LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~--~~--~----~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|+++.. .....+.|+|-  |+  +    +...                      ....|.|++++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~e   89 (121)
T d1ol0a_          10 GLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAE   89 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccc
Confidence            568999999999976532 12334788761  11  1    1100                      4457999999999


Q ss_pred             CCeEEEEEEE
Q psy14542         70 DAGMYQCHVS   79 (371)
Q Consensus        70 d~G~Y~C~~~   79 (371)
                      |++.|.|...
T Consensus        90 DtAvYYCAr~   99 (121)
T d1ol0a_          90 DTAVYYCARE   99 (121)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEEEe
Confidence            9999999764

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.43  E-value=0.00047  Score=46.48  Aligned_cols=60  Identities=23%  Similarity=0.415  Sum_probs=41.5

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEe--CC--EE----Ee-eC---------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLK--DG--LV----LR-RN---------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~--~~--~~----~~-~~---------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|.++.. .....+.|+|  -|  .+    +. ..                     ....|.+.+++.+
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~e   88 (133)
T d1rzfh1           9 EVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRSD   88 (133)
T ss_dssp             EEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCCC
Confidence            679999999999976532 2233478877  11  11    11 00                     4567999999999


Q ss_pred             CCeEEEEEEEc
Q psy14542         70 DAGMYQCHVSA   80 (371)
Q Consensus        70 d~G~Y~C~~~~   80 (371)
                      |++.|.|....
T Consensus        89 DtA~YYCAr~~   99 (133)
T d1rzfh1          89 DTAVYYCASNS   99 (133)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CCEEEEeeecc
Confidence            99999997643

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.42  E-value=0.00034  Score=45.22  Aligned_cols=57  Identities=26%  Similarity=0.390  Sum_probs=34.7

Q ss_pred             ccCcEEEEEEecCC-CCCCeeEEEe--CCEE------EeeC----------------------CeeEEEEccCCcCCCeE
Q psy14542         25 VGHRIELHCRVSPK-RLSSAKAWLK--DGLV------LRRN----------------------SDEVLVLDRVQREDAGM   73 (371)
Q Consensus        25 ~G~~v~l~C~~~~~-~~~~~~~W~~--~~~~------~~~~----------------------~~~~l~i~~~~~~d~G~   73 (371)
                      +|++++|.|+++.. .....+.|+|  -|+.      +...                      ....|.|.+++.+|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            58999999976532 2234588986  1211      1100                      44579999999999999


Q ss_pred             EEEEEEcC
Q psy14542         74 YQCHVSAD   81 (371)
Q Consensus        74 Y~C~~~~~   81 (371)
                      |.|.....
T Consensus        81 YYCAr~~~   88 (103)
T d1oari_          81 YYCARMWY   88 (103)
T ss_dssp             EEEEEEEC
T ss_pred             EEeEEECC
Confidence            99986543

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=0.00017  Score=47.19  Aligned_cols=66  Identities=15%  Similarity=0.280  Sum_probs=42.2

Q ss_pred             ecCCeEEEEEEeecC-CC-CceEEEeCCcccccC--CceE-----EecceEEEeccCCCCCeEEEEEEEcCCCCce
Q psy14542        235 KKDESVILPCSAQGN-PL-PTIKWYKQDSPVEES--DRIQ-----RIGSSLSISHVEESDSGVWNCVANNSEGQDK  301 (371)
Q Consensus       235 ~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~--~~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  301 (371)
                      ..++.++|.|.+.|+ |. ..|.|.+++......  ....     ...+.|.|..-... .|.|+|++.+......
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~   92 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTWP-SASVTCLVAHPKSSTA   92 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTT-TSCCEEEEEEGGGTEE
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhcC-CCeEEEEEEeCCCCee
Confidence            457889999999984 43 469998777532111  1111     12245777666553 5789999998766543

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.41  E-value=0.00069  Score=44.65  Aligned_cols=60  Identities=22%  Similarity=0.416  Sum_probs=41.8

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEeC--CEEE------eeC---------------------CeeEEEEccCCcCC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKD--GLVL------RRN---------------------SDEVLVLDRVQRED   70 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~--~~~~------~~~---------------------~~~~l~i~~~~~~d   70 (371)
                      ..+.+|+++.|.|.++.. .....+.|+|.  |+.+      ...                     ....|.|.+++.+|
T Consensus        10 ~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eD   89 (118)
T d1lo4h1          10 DLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSED   89 (118)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCc
Confidence            468999999999976532 23445888871  1111      000                     44579999999999


Q ss_pred             CeEEEEEEEc
Q psy14542         71 AGMYQCHVSA   80 (371)
Q Consensus        71 ~G~Y~C~~~~   80 (371)
                      ++.|.|.-..
T Consensus        90 tA~YyCAr~~   99 (118)
T d1lo4h1          90 TAIYYCARGT   99 (118)
T ss_dssp             CEEEEEEEEE
T ss_pred             ceEEEecccC
Confidence            9999997643

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.41  E-value=0.00014  Score=48.74  Aligned_cols=64  Identities=19%  Similarity=0.378  Sum_probs=42.7

Q ss_pred             eecCCeEEEEEEeecCCCCceEEEeCCc--ccc---------------cCCceE-----EecceEEEeccCCCCCeEEEE
Q psy14542        234 VKKDESVILPCSAQGNPLPTIKWYKQDS--PVE---------------ESDRIQ-----RIGSSLSISHVEESDSGVWNC  291 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~--~~~---------------~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C  291 (371)
                      +.+|++++|.|.... ....+.|++...  .+.               ...+..     .....|.|.++..+|+|.|.|
T Consensus        10 ~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyC   88 (112)
T d2cdeb1          10 IGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHTSQYLC   88 (112)
T ss_dssp             EETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTCSEEEE
T ss_pred             ECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccccccccEEE
Confidence            889999999998653 235699997321  110               001111     112469999999999999999


Q ss_pred             EEEcCCC
Q psy14542        292 VANNSEG  298 (371)
Q Consensus       292 ~a~n~~g  298 (371)
                      .+....+
T Consensus        89 A~~~~~~   95 (112)
T d2cdeb1          89 ASSENIG   95 (112)
T ss_dssp             EEECSSS
T ss_pred             EEecCCC
Confidence            8875443

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.40  E-value=0.00023  Score=47.74  Aligned_cols=60  Identities=30%  Similarity=0.511  Sum_probs=41.3

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEeC----CEE----EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKD----GLV----LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~----~~~----~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|+++.. .....+.|+|-    +.+    +...                      ....|.|++++.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~e   89 (127)
T d2fb4h1          10 GVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPE   89 (127)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeec
Confidence            478999999999976532 22334778761    111    1100                      4467999999999


Q ss_pred             CCeEEEEEEEc
Q psy14542         70 DAGMYQCHVSA   80 (371)
Q Consensus        70 d~G~Y~C~~~~   80 (371)
                      |++.|.|....
T Consensus        90 DTA~YYCAr~~  100 (127)
T d2fb4h1          90 DTGVYFCARDG  100 (127)
T ss_dssp             GCEEEEEEEEC
T ss_pred             ceeEEEEEEec
Confidence            99999998653

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.39  E-value=0.00026  Score=46.74  Aligned_cols=60  Identities=23%  Similarity=0.438  Sum_probs=41.2

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEe----CCEE-E---eeC---------------------CeeEEEEccCCcCC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLK----DGLV-L---RRN---------------------SDEVLVLDRVQRED   70 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~----~~~~-~---~~~---------------------~~~~l~i~~~~~~d   70 (371)
                      ..+.+|+++.|.|+++.. .....+.|+|    .+.+ +   ...                     ....|.+.+++.+|
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eD   89 (116)
T d1fn4b1          10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDD   89 (116)
T ss_dssp             SBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCC
T ss_pred             ceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCC
Confidence            358899999999976532 2234588987    1111 1   111                     44568899999999


Q ss_pred             CeEEEEEEEc
Q psy14542         71 AGMYQCHVSA   80 (371)
Q Consensus        71 ~G~Y~C~~~~   80 (371)
                      ++.|.|....
T Consensus        90 TAvYyCAr~~   99 (116)
T d1fn4b1          90 TGTYYCTRDL   99 (116)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEEeec
Confidence            9999997643

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.37  E-value=0.00035  Score=47.13  Aligned_cols=59  Identities=22%  Similarity=0.469  Sum_probs=40.9

Q ss_pred             EEEeccCcEEEEEEecCCC-CCCeeEEEe----CCEE----Eee-----------C-------------CeeEEEEccCC
Q psy14542         21 VVVDVGHRIELHCRVSPKR-LSSAKAWLK----DGLV----LRR-----------N-------------SDEVLVLDRVQ   67 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~----~~~~----~~~-----------~-------------~~~~l~i~~~~   67 (371)
                      ..+.+|++++|.|.++... ....+.|+|    .+.+    +..           .             ....|.|.+++
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L~   89 (131)
T d3c2ah1          10 GLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLK   89 (131)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceeccc
Confidence            4789999999999765322 223578876    1211    110           0             44679999999


Q ss_pred             cCCCeEEEEEEE
Q psy14542         68 REDAGMYQCHVS   79 (371)
Q Consensus        68 ~~d~G~Y~C~~~   79 (371)
                      .+|++.|.|...
T Consensus        90 ~eDTAvYYCAR~  101 (131)
T d3c2ah1          90 TEDTAVYSCTTD  101 (131)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCCceEEEEecc
Confidence            999999999864

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.36  E-value=9.4e-05  Score=48.06  Aligned_cols=58  Identities=21%  Similarity=0.473  Sum_probs=38.4

Q ss_pred             EEeccCcEEEEEEecCC-CCCCeeEEEeC--CE---E---Ee--------eC-------------CeeEEEEccCCcCCC
Q psy14542         22 VVDVGHRIELHCRVSPK-RLSSAKAWLKD--GL---V---LR--------RN-------------SDEVLVLDRVQREDA   71 (371)
Q Consensus        22 ~~~~G~~v~l~C~~~~~-~~~~~~~W~~~--~~---~---~~--------~~-------------~~~~l~i~~~~~~d~   71 (371)
                      .+.+|+++.|.|+++.. .....+.|+|.  |+   -   +.        ..             ....|.|.+++.+|+
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            47899999999965432 22345788872  11   0   00        00             445799999999999


Q ss_pred             eEEEEEEE
Q psy14542         72 GMYQCHVS   79 (371)
Q Consensus        72 G~Y~C~~~   79 (371)
                      +.|.|...
T Consensus        84 AvYyCA~~   91 (107)
T d1sjva_          84 AVYYCYTH   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             eeeeEecc
Confidence            99999754

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.35  E-value=0.00052  Score=45.24  Aligned_cols=85  Identities=20%  Similarity=0.289  Sum_probs=48.5

Q ss_pred             ceeeecCCcEEEEEEecCCCC-CceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ceE
Q psy14542        105 QVVVDVGHRIELHCRVSPKRL-SSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GEL  176 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~l  176 (371)
                      ...+.+|++++|.|.+.|+.. .-.+.|++.  |+.+.    ....|..   .+...+......+|+.+..+     ..|
T Consensus         9 ~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglE----wlg~i~~---~~~~~~y~~~~~gR~tiS~D~s~~t~~L   81 (117)
T d1iqdb1           9 AEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLE----WVGSFDP---ESGESIYAREFQGSVTMTADTSTNIAYM   81 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEE----EEEEEET---TTTEEEECGGGTTTEEEEEETTTTEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCcee----eeeecCC---ccccceecceeeeeeeeecccccceEEE
Confidence            344589999999999988643 256899882  22211    1111110   00001100111234444422     258


Q ss_pred             EEEEeecCCccceeEEEeecc
Q psy14542        177 IIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      .|.+++.+| ++.|.|.....
T Consensus        82 ~i~~L~~eD-tAvYYCA~~~~  101 (117)
T d1iqdb1          82 ELSSLRSDD-TAVYYCAVPDP  101 (117)
T ss_dssp             EECSCCGGG-CEEEEEEECSS
T ss_pred             eecccCcCc-ceEEEEeEcCC
Confidence            999999999 99999986543

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.35  E-value=0.00052  Score=45.21  Aligned_cols=82  Identities=16%  Similarity=0.288  Sum_probs=46.6

Q ss_pred             ceeeecCCcEEEEEEecCCCC-CceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ceE
Q psy14542        105 QVVVDVGHRIELHCRVSPKRL-SSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GEL  176 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~l  176 (371)
                      ...+.+|++++|.|.+.+... .-.+.|++.  |+.+    ...-.|..   .....+.-....+|+.+..+     ..|
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkgl----Ewvg~i~~---~~~~~~ya~~~kgRftisrD~s~~tvyL   81 (118)
T d1nlbh1           9 PELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGL----NWMGWVNT---ETGEPTYADDFKGRFAFSLETSASTAYL   81 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCE----EEEEEECT---TTCCEEECGGGSSSEEEEEEGGGTEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeccccCCCccc----eeeeecCc---ccccchhhhheeeeeEEEecCCceeEEe
Confidence            344589999999999988643 256899872  2211    11111110   11111111111234444422     358


Q ss_pred             EEEEeecCCccceeEEEe
Q psy14542        177 IIHQVDESDRYRSYQCRG  194 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~  194 (371)
                      .+.+++.+| ++.|.|..
T Consensus        82 ~~~~L~~eD-tAvYYCAr   98 (118)
T d1nlbh1          82 QINSLKNED-TATYFCAR   98 (118)
T ss_dssp             EECSCCGGG-CEEEEEEE
T ss_pred             eeeecccCc-ceEEEEee
Confidence            899999999 99999953

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.34  E-value=9.8e-05  Score=49.03  Aligned_cols=83  Identities=16%  Similarity=0.232  Sum_probs=47.0

Q ss_pred             eeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ceEEEEE
Q psy14542        107 VVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GELIIHQ  180 (371)
Q Consensus       107 ~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~l~i~~  180 (371)
                      .+.+|++++|.|...+.. ....+.|++....   ..-..+......   ...|. ....+++.+..+     ..|+|.+
T Consensus         6 ~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg---~~~~~li~~~~~---~~~~~-~~~~gR~sis~d~~~~~~~lti~~   78 (110)
T d1u9ka_           6 DLVEGQTLTVKCPFNIMKYANSQKAWQRLPDG---KEPLTLVVTQRP---FTRPS-EVHMGKFTLKHDPSEAMLQVQMTD   78 (110)
T ss_dssp             EECTTCCEEEEEECCHHHHTTSEEEEEECCTT---SCCEEEEECCSS---TTSCE-EEEETTEEEEEEGGGTEEEEEECS
T ss_pred             cCCCCCCEEEEEEECCCCccCCcEEEEEECCC---CCEEEEEecCCC---ceeec-hhhCcEEEEEEECCCCEEEEEECc
Confidence            347999999999986532 2256889983210   000111111111   11111 111234444422     3589999


Q ss_pred             eecCCccceeEEEeecc
Q psy14542        181 VDESDRYRSYQCRGVNK  197 (371)
Q Consensus       181 ~~~~d~~g~y~C~~~~~  197 (371)
                      ++.+| +|.|.|.....
T Consensus        79 L~~eD-sa~YyCa~~~~   94 (110)
T d1u9ka_          79 LQVTD-SGLYRCVIYHP   94 (110)
T ss_dssp             CCGGG-CEEEEEEEECT
T ss_pred             cccCC-CEEEEEEEeCC
Confidence            99999 99999987654

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.33  E-value=0.00035  Score=47.09  Aligned_cols=60  Identities=20%  Similarity=0.453  Sum_probs=41.9

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEeC----C-EEE---e--------------eC-------------CeeEEEEc
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKD----G-LVL---R--------------RN-------------SDEVLVLD   64 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~----~-~~~---~--------------~~-------------~~~~l~i~   64 (371)
                      -.+.+|+++.|.|+++.. .....+.|+|.    + +-+   .              ..             ....|.|+
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~   89 (127)
T d1i3ua_          10 GLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMN   89 (127)
T ss_dssp             EECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEEC
T ss_pred             ceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeee
Confidence            578999999999976532 12345888872    1 111   0              00             45579999


Q ss_pred             cCCcCCCeEEEEEEEc
Q psy14542         65 RVQREDAGMYQCHVSA   80 (371)
Q Consensus        65 ~~~~~d~G~Y~C~~~~   80 (371)
                      +++.+|++.|.|....
T Consensus        90 ~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          90 SLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             SCCGGGCEEEEEEEES
T ss_pred             cccccceeEEEEEEEe
Confidence            9999999999998653

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.33  E-value=0.00022  Score=47.45  Aligned_cols=59  Identities=29%  Similarity=0.460  Sum_probs=41.0

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEeC----CEE----EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKD----GLV----LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~----~~~----~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|+++.. .....+.|+|-    +.+    +...                      ....|.|.+++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~~e   89 (124)
T d1yedb1          10 ELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKSE   89 (124)
T ss_dssp             EEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccCCC
Confidence            678999999999976532 22345788761    111    1110                      4567899999999


Q ss_pred             CCeEEEEEEE
Q psy14542         70 DAGMYQCHVS   79 (371)
Q Consensus        70 d~G~Y~C~~~   79 (371)
                      |++.|.|...
T Consensus        90 DTAvYYCAR~   99 (124)
T d1yedb1          90 DSAVYFCTRW   99 (124)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEeccc
Confidence            9999999754

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.32  E-value=0.00034  Score=46.53  Aligned_cols=60  Identities=23%  Similarity=0.399  Sum_probs=41.2

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEeC--CE--E----Ee-----------eC-------------CeeEEEEccCC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKD--GL--V----LR-----------RN-------------SDEVLVLDRVQ   67 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~--~~--~----~~-----------~~-------------~~~~l~i~~~~   67 (371)
                      ..+.+|+++.|.|.++.. .....+.|+|-  |+  +    +.           ..             ....|.|.+++
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~   89 (122)
T d1q9rb1          10 GLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLR   89 (122)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeec
Confidence            479999999999976532 12334788861  11  0    10           00             34569999999


Q ss_pred             cCCCeEEEEEEEc
Q psy14542         68 REDAGMYQCHVSA   80 (371)
Q Consensus        68 ~~d~G~Y~C~~~~   80 (371)
                      .+|++.|.|....
T Consensus        90 ~eDTAvYYCar~~  102 (122)
T d1q9rb1          90 AEDSATYYCARDH  102 (122)
T ss_dssp             GGGCEEEEEEECC
T ss_pred             cCcceEEEEEecC
Confidence            9999999998643

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.31  E-value=0.00063  Score=44.83  Aligned_cols=84  Identities=18%  Similarity=0.254  Sum_probs=47.8

Q ss_pred             CCceeeecCCcEEEEEEecCCCC-CceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----c
Q psy14542        103 SNQVVVDVGHRIELHCRVSPKRL-SSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----G  174 (371)
Q Consensus       103 ~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~  174 (371)
                      .....+.+|+++.|.|.+.|... .-.+.|++.  |+.+    ...-.+..   .+...+......+|+.+..+     .
T Consensus         7 sg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkgl----ewlg~i~~---~~~~~~y~~~~kgR~tiS~D~s~~t~   79 (118)
T d2jelh1           7 SGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSL----EWIGLIST---YSGYTNYNQKFKGKATMTVDKSSSTA   79 (118)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSE----EEEEEECT---TTCCEEECGGGBTTEEEEEEGGGTEE
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCccc----ccccccCC---cCCcchhhhhhcccEEEecccCcceE
Confidence            34445589999999999988654 246899872  2211    11111111   01111111111234444432     3


Q ss_pred             eEEEEEeecCCccceeEEEe
Q psy14542        175 ELIIHQVDESDRYRSYQCRG  194 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~  194 (371)
                      .|.|.+++.+| ++.|.|..
T Consensus        80 ~L~~~sL~~eD-TAvYYCAr   98 (118)
T d2jelh1          80 YMELARLTSED-SAIYYCAR   98 (118)
T ss_dssp             EEEECSCCGGG-CEEEEEEE
T ss_pred             eecccccccCc-ceeeeEEE
Confidence            58899999999 99999954

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.29  E-value=0.00063  Score=44.84  Aligned_cols=84  Identities=17%  Similarity=0.260  Sum_probs=48.1

Q ss_pred             CceeeecCCcEEEEEEecCCCC-CceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ce
Q psy14542        104 NQVVVDVGHRIELHCRVSPKRL-SSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GE  175 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~  175 (371)
                      ....+.+|++++|.|.+.+... ...+.|++.  |+.+    .....+...   +...+......+++.+..+     ..
T Consensus         8 g~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkgl----ewl~~i~~~---~~~~~y~~~~~gRftis~D~s~~t~~   80 (115)
T d1f3dh1           8 GPELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSL----EWIGYIVPY---SGGTTFNQKFKGKATLTVDKSSSTAF   80 (115)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEE----EEEEEECTT---TCCEEECGGGBTTEEEEEETTTTEEE
T ss_pred             CCcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCcc----EEeeccCCC---CCcccccceeeEEEEEeeccCceeeE
Confidence            3445588999999999987642 256899872  2222    111122211   1111111111234444321     35


Q ss_pred             EEEEEeecCCccceeEEEee
Q psy14542        176 LIIHQVDESDRYRSYQCRGV  195 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~  195 (371)
                      |.|.+++.+| ++.|.|...
T Consensus        81 L~i~~l~~eD-tAvYYCAr~   99 (115)
T d1f3dh1          81 MHLNSLTFED-SAVYYCAND   99 (115)
T ss_dssp             EEECSCCGGG-CEEEEEEEC
T ss_pred             eeeeecCcCC-cEEEEEecc
Confidence            8999999999 999999643

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.29  E-value=0.0017  Score=42.74  Aligned_cols=86  Identities=16%  Similarity=0.228  Sum_probs=49.2

Q ss_pred             CceeeecCCcEEEEEEecCCCC-CceEEEee--CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ce
Q psy14542        104 NQVVVDVGHRIELHCRVSPKRL-SSAKAWLK--DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GE  175 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~--~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~  175 (371)
                      -...+.+|++++|.|.+.|... .-.+.|++  .|+.+.    ....+..   .+...+......+++.+..+     ..
T Consensus         8 G~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglE----wv~~i~~---~~~~~~Y~~s~kgRftiSrD~s~nt~~   80 (118)
T d2fbjh1           8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLE----WIGEIHP---DSGTINYTPSLKDKFIISRDNAKNSLY   80 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEE----EEEEECT---TSSCEEECTTTTTTEEEEECSSSCEEE
T ss_pred             CCceECCCCCEEEEEEECCccccCCceeeeeecCCccee----eeeecCc---ccccccccccceeeEEEeecCccceee
Confidence            3445589999999999988753 24688987  222221    1112211   01111110111234444432     35


Q ss_pred             EEEEEeecCCccceeEEEeecc
Q psy14542        176 LIIHQVDESDRYRSYQCRGVNK  197 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~~~  197 (371)
                      |.|.+++.+| ++.|.|.....
T Consensus        81 L~~~sL~~eD-tAvYYCAr~~~  101 (118)
T d2fbjh1          81 LQMSKVRSED-TALYYCARLHY  101 (118)
T ss_dssp             EEECSCCGGG-CEEEEEEEEET
T ss_pred             ccccccCCCc-ceEEEeeEecC
Confidence            8899999999 99999976543

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.28  E-value=0.0006  Score=44.81  Aligned_cols=84  Identities=18%  Similarity=0.244  Sum_probs=48.6

Q ss_pred             CceeeecCCcEEEEEEecCCCC-CceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ce
Q psy14542        104 NQVVVDVGHRIELHCRVSPKRL-SSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GE  175 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~  175 (371)
                      -...+.+|+++.|.|.+.|... .-.+.|++.  |+.+.    ..-.|..   .+...+.-....+++.+..+     ..
T Consensus         8 G~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkgle----wvg~i~~---~~~~~~ya~s~kgR~tiSrD~s~nt~y   80 (117)
T d1jpth1           8 GGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLE----WVGLIDP---EQGNTIYDPKFQDRATISADNSKNTAY   80 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEE----EEEEECT---TTCCEEECTTTTTTEEEEEEGGGTEEE
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceE----eeeeccc---ccccccccccceeeEEEEeccccceEE
Confidence            3445589999999999998643 257899872  22111    1111111   11111111111334544432     34


Q ss_pred             EEEEEeecCCccceeEEEee
Q psy14542        176 LIIHQVDESDRYRSYQCRGV  195 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~  195 (371)
                      |.+.+++.+| .+.|.|...
T Consensus        81 L~m~~L~~eD-TAvYYCAr~   99 (117)
T d1jpth1          81 LQMNSLRAED-TAVYYCARD   99 (117)
T ss_dssp             EEECSCCGGG-CEEEEEEEE
T ss_pred             ecccccCCCC-ceEEEEeec
Confidence            8889999999 999999643

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.27  E-value=0.0003  Score=47.16  Aligned_cols=60  Identities=25%  Similarity=0.520  Sum_probs=41.0

Q ss_pred             cEEEeccCcEEEEEEecCC-CCCCeeEEEeC--CE------EEeeC----------------------CeeEEEEccCCc
Q psy14542         20 QVVVDVGHRIELHCRVSPK-RLSSAKAWLKD--GL------VLRRN----------------------SDEVLVLDRVQR   68 (371)
Q Consensus        20 ~~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~--~~------~~~~~----------------------~~~~l~i~~~~~   68 (371)
                      +..+.+|+++.|.|.++.. .....+.|+|.  |+      .+...                      ....|.|++++.
T Consensus         8 ~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~   87 (126)
T d1rjca1           8 GGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKP   87 (126)
T ss_dssp             CEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCc
Confidence            3678999999999965532 22345788871  11      11111                      345599999999


Q ss_pred             CCCeEEEEEEE
Q psy14542         69 EDAGMYQCHVS   79 (371)
Q Consensus        69 ~d~G~Y~C~~~   79 (371)
                      +|++.|.|...
T Consensus        88 eDTAvYYCAr~   98 (126)
T d1rjca1          88 EDTAMYYCAAD   98 (126)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccCceeEEEee
Confidence            99999999864

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.27  E-value=7.2e-05  Score=49.67  Aligned_cols=72  Identities=8%  Similarity=0.010  Sum_probs=47.0

Q ss_pred             cceEEEeCCCcEEEeccCcEEEEEEecCCCCC-CeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCe-E
Q psy14542         10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAG-M   73 (371)
Q Consensus        10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G-~   73 (371)
                      +|++.+.+.....+..++.++|.|.+...+|. ..+.|++||..+...              ..+.|.|.   .+|.| .
T Consensus         8 ~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~---~~~w~~~   84 (107)
T d1hxmb2           8 SPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVP---EKSLDKE   84 (107)
T ss_dssp             SCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEEC---TGGGGSC
T ss_pred             CCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEe---cccCCCe
Confidence            45566665543456678899999977765654 469999988765443              22344443   34434 6


Q ss_pred             EEEEEEcCCCC
Q psy14542         74 YQCHVSADDDS   84 (371)
Q Consensus        74 Y~C~~~~~~~~   84 (371)
                      |+|.+.+....
T Consensus        85 ytC~V~H~s~~   95 (107)
T d1hxmb2          85 HRCIVRHENNK   95 (107)
T ss_dssp             EEEEEEETTSG
T ss_pred             EEEEEEECCCC
Confidence            99999876543

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.27  E-value=0.0005  Score=46.20  Aligned_cols=59  Identities=20%  Similarity=0.396  Sum_probs=40.6

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEe--CCE--E----EeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLK--DGL--V----LRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~--~~~--~----~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|+++.. .....+.|+|  -|+  +    +...                      ....|.|.+++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~~e   89 (130)
T d1rzga1          10 EVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLRSE   89 (130)
T ss_dssp             EEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecCCC
Confidence            679999999999965532 2234588876  111  0    1100                      3456889999999


Q ss_pred             CCeEEEEEEE
Q psy14542         70 DAGMYQCHVS   79 (371)
Q Consensus        70 d~G~Y~C~~~   79 (371)
                      |++.|.|...
T Consensus        90 DtA~YYCAr~   99 (130)
T d1rzga1          90 DTAVFYCASP   99 (130)
T ss_dssp             GCEEEEEEEC
T ss_pred             ccEEEEEEEe
Confidence            9999999864

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.27  E-value=0.00081  Score=44.34  Aligned_cols=84  Identities=18%  Similarity=0.300  Sum_probs=47.3

Q ss_pred             CCceeeecCCcEEEEEEecCCCC-CceEEEee--CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----c
Q psy14542        103 SNQVVVDVGHRIELHCRVSPKRL-SSAKAWLK--DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----G  174 (371)
Q Consensus       103 ~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~--~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~  174 (371)
                      .....+.+|++++|.|.+.|+.. ...+.|++  .|+.+.    ....+..   .+...+......+++.+..+     .
T Consensus         7 sg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglE----wl~~i~~---~~~~~~ya~~~~~R~t~s~D~s~~~~   79 (117)
T d1mfah1           7 SGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLE----WIGAIYP---GNSATFYNHKFRAKTKLTAVTSTTTA   79 (117)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEE----EEEEEET---TTTEEEECTTTTTTEEEEEETTTTEE
T ss_pred             ECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcce----eeEccCc---ccccccccccceeeEEEEcccCccEe
Confidence            34445589999999999988643 35688987  232221    1111110   01111110011223333321     3


Q ss_pred             eEEEEEeecCCccceeEEEe
Q psy14542        175 ELIIHQVDESDRYRSYQCRG  194 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~  194 (371)
                      .|.|.+++.+| .+.|.|..
T Consensus        80 ~L~i~~L~~eD-tAvYYCAr   98 (117)
T d1mfah1          80 YMELSSLTSED-SAVYYCTR   98 (117)
T ss_dssp             EEEECSCCGGG-CEEEEEEE
T ss_pred             EeeecccCCCc-ceEEEEec
Confidence            58899999999 99999964

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.26  E-value=0.00068  Score=44.87  Aligned_cols=85  Identities=20%  Similarity=0.325  Sum_probs=48.2

Q ss_pred             CceeeecCCcEEEEEEecCCCC-CceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ce
Q psy14542        104 NQVVVDVGHRIELHCRVSPKRL-SSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GE  175 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~  175 (371)
                      -...+.+|+++.|.|.+.|... .-.+.|++.  |+.+.    ..-.+..   .+...+.-....+++.+..+     ..
T Consensus         8 g~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgle----wv~~i~~---~~~~~~ya~s~kgRftiSrD~s~nt~y   80 (119)
T d1rz7h1           8 GAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLE----WMGLIDP---EDADTMYAEKFRGRVTITADTSTDTGY   80 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEE----EEEEEET---TTTEEEECTTTTTTEEEEEETTTTEEE
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceEccccCCcccee----eeeecCC---cccccccccceeeeEEEecccCceEEE
Confidence            3444589999999999998653 256899872  22111    1111111   11111111111234444321     35


Q ss_pred             EEEEEeecCCccceeEEEeec
Q psy14542        176 LIIHQVDESDRYRSYQCRGVN  196 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~~  196 (371)
                      |.|.+++.+| .+.|.|....
T Consensus        81 Lqm~sL~~eD-TAvYYCAr~~  100 (119)
T d1rz7h1          81 LELSSLRSED-TAVYYCAADP  100 (119)
T ss_dssp             EEECSCCGGG-CEEEEEEECT
T ss_pred             eeeeccCccc-ceEEEEeecC
Confidence            8899999999 9999997543

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.26  E-value=0.00066  Score=44.47  Aligned_cols=84  Identities=15%  Similarity=0.206  Sum_probs=48.0

Q ss_pred             CCceeeecCCcEEEEEEecCCCC-CceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----c
Q psy14542        103 SNQVVVDVGHRIELHCRVSPKRL-SSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----G  174 (371)
Q Consensus       103 ~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~  174 (371)
                      .....+.+|+++.|.|.+.+... ...+.|++.  |+.+.    ..-.|.   ..+...+.-....+++.+..+     .
T Consensus         7 sg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLE----w~g~i~---~~~~~~~ya~s~kgR~tiS~D~s~~tv   79 (116)
T d1mjuh1           7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLE----WIGNIY---PGSSYTHYNEKFKNKATLTVDTSSSTA   79 (116)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEE----EEEEEE---TTTTEEEECGGGTTTEEEEEETTTTEE
T ss_pred             ECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCccee----eeeecC---ccccccccccccceeeeEeccccccee
Confidence            34445589999999999988643 256889872  22111    111111   111111111111234444322     3


Q ss_pred             eEEEEEeecCCccceeEEEe
Q psy14542        175 ELIIHQVDESDRYRSYQCRG  194 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~  194 (371)
                      .|.+.+++.+| .+.|.|..
T Consensus        80 yL~~~sL~~eD-tAvYYCAr   98 (116)
T d1mjuh1          80 YMQLSSLTSDD-SAVYYCAN   98 (116)
T ss_dssp             EEEECSCCGGG-CEEEEEEE
T ss_pred             EecccccCCCC-ceEEEEcc
Confidence            58899999999 99999964

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.26  E-value=0.00027  Score=46.41  Aligned_cols=64  Identities=16%  Similarity=0.241  Sum_probs=41.2

Q ss_pred             ecCCeEEEEEEeec-CCC---CceEEEeCCcccccCCc---eE------EecceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542        235 KKDESVILPCSAQG-NPL---PTIKWYKQDSPVEESDR---IQ------RIGSSLSISHVEESDSGVWNCVANNSEG  298 (371)
Q Consensus       235 ~~g~~~~l~C~~~~-~p~---~~v~W~~~~~~~~~~~~---~~------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  298 (371)
                      ..+..++|+|.+.+ +|.   ..++|.++|..+.....   ..      ...+.|.|..-.....-.|+|++.+..-
T Consensus        14 ~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~l   90 (103)
T d1i1ca1          14 GGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAF   90 (103)
T ss_dssp             TSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSS
T ss_pred             ccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCCC
Confidence            34667899999987 343   47899999986544311   11      1223455555555556689999998653

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.26  E-value=0.00043  Score=45.87  Aligned_cols=85  Identities=19%  Similarity=0.320  Sum_probs=49.0

Q ss_pred             ceeeecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ceEEE
Q psy14542        105 QVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GELII  178 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~l~i  178 (371)
                      ...+.+|++++|.|.+.+... .-.+.|+|..  ..........+..    +...+.-....+++.+..+     ..|.|
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~--pGkglewl~~i~~----~g~~~y~~~~kgR~tiS~D~s~~~~~L~i   81 (119)
T d1kxvc_           8 GGTVPAGGSLRLSCAASGNTLCTYDMSWYRRA--PGKGRDFVSGIDN----DGTTTYVDSVAGRFTISQGNAKNTAYLQM   81 (119)
T ss_dssp             CEEECTTCCEEEEEEEESCTTCCEEEEEEEEC--TTSCEEEEEEECT----TCCEEECGGGBTTEEEEECSSTTEEEEEE
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceeeeeeC--CCCcceeeeeccc----ccchhhhhhhhcceEEecccCCcceeccc
Confidence            344589999999999988643 2468898731  0011122222221    1111111111234554432     35899


Q ss_pred             EEeecCCccceeEEEeec
Q psy14542        179 HQVDESDRYRSYQCRGVN  196 (371)
Q Consensus       179 ~~~~~~d~~g~y~C~~~~  196 (371)
                      .+++.+| ++.|.|....
T Consensus        82 ~~L~~eD-tA~YYCAr~~   98 (119)
T d1kxvc_          82 DSLKPDD-TAMYYCKPSL   98 (119)
T ss_dssp             CSCCGGG-CEEEEEEEEE
T ss_pred             ccCCcCC-cceEeeeecc
Confidence            9999999 9999997543

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.25  E-value=0.0014  Score=43.02  Aligned_cols=63  Identities=24%  Similarity=0.459  Sum_probs=43.4

Q ss_pred             eecCCeEEEEEEeecCCCC--ceEEEeC--Cccc------c----------cCCceEEe--c----ceEEEeccCCCCCe
Q psy14542        234 VKKDESVILPCSAQGNPLP--TIKWYKQ--DSPV------E----------ESDRIQRI--G----SSLSISHVEESDSG  287 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~p~~--~v~W~~~--~~~~------~----------~~~~~~~~--~----~~l~i~~~~~~d~G  287 (371)
                      +.+|++++|+|.+.|+...  .+.|++.  |+.+      .          ..+|+...  +    ..|.|++++.+|++
T Consensus        12 vkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eDtA   91 (116)
T d7fabh1          12 VRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAADTA   91 (116)
T ss_dssp             ECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             ECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccccce
Confidence            8899999999999986554  4788862  2211      0          11333321  1    25899999999999


Q ss_pred             EEEEEEEcC
Q psy14542        288 VWNCVANNS  296 (371)
Q Consensus       288 ~Y~C~a~n~  296 (371)
                      .|.|.....
T Consensus        92 vYyCAr~~~  100 (116)
T d7fabh1          92 VYYCARNLI  100 (116)
T ss_dssp             EEEEEEECS
T ss_pred             EEEeeeecC
Confidence            999976443

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.23  E-value=0.00073  Score=44.98  Aligned_cols=85  Identities=19%  Similarity=0.292  Sum_probs=48.5

Q ss_pred             CCceeeecCCcEEEEEEecCCCC-CceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cc
Q psy14542        103 SNQVVVDVGHRIELHCRVSPKRL-SSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SG  174 (371)
Q Consensus       103 ~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~  174 (371)
                      .....+.+|++++|.|.+.+... ...+.|++.  |+.+    .....+..   .+...+.-....+++.+..     ..
T Consensus         7 sg~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgl----e~l~~i~~---~~~~~~y~~~~kgR~tis~D~s~~t~   79 (121)
T d1j05b_           7 SGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGL----EWIGRIDP---ANGNSKYVPKFQGKATITADTSSNTA   79 (121)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCC----EEEEEEET---TTTEEEECGGGTTTEEEEEEGGGTEE
T ss_pred             ECCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCcc----ccccccCC---cCCccccchhhccceEEEeecCCcee
Confidence            33445589999999999987642 257899873  2211    12222211   0111111001123444432     13


Q ss_pred             eEEEEEeecCCccceeEEEee
Q psy14542        175 ELIIHQVDESDRYRSYQCRGV  195 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~~  195 (371)
                      .|.|.+++.+| ++.|.|...
T Consensus        80 ~L~i~~L~~eD-tAvYYCAr~   99 (121)
T d1j05b_          80 YLQLTSLTSED-TAVYYCAPF   99 (121)
T ss_dssp             EEEECSCCGGG-CEEEEEEEE
T ss_pred             eecccccCcCc-ceEEEeEee
Confidence            58999999999 999999754

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=0.0013  Score=39.69  Aligned_cols=54  Identities=24%  Similarity=0.492  Sum_probs=40.4

Q ss_pred             ecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEE
Q psy14542        235 KKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVAN  294 (371)
Q Consensus       235 ~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  294 (371)
                      ....+|.|.|...   ..++.|++++..+.....   ...+|.+.+...+-.|.|.|...
T Consensus        20 ~~dGsV~L~Cn~~---~k~i~W~kdg~~i~~~~~---~~ktlnLG~~~~DPRGiY~C~g~   73 (86)
T d1jbja1          20 RGDGSVLLTCGLT---DKTIKWLKDGSIISPLNA---TKNTWNLGNNAKDPRGTYQCQGA   73 (86)
T ss_dssp             SSSCEEEEECSSS---CSCEEEEETTEECCCSSC---CSSCCEEEETTSCCEEEEEEEES
T ss_pred             ccCCeEEEEeCCC---CcEEEEecCCceeccccc---ccceeecCCcccCCCcceEcCCC
Confidence            4567799999543   358999999987654421   23578898888899999999754

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00019  Score=47.41  Aligned_cols=73  Identities=19%  Similarity=0.261  Sum_probs=44.9

Q ss_pred             ceEEEeCCCcE-EEeccCcEEEEEEecCCCCC---CeeEEEeCCEEEeeC--------C------eeEEEEccCCcCCCe
Q psy14542         11 LSIEMSPSGQV-VVDVGHRIELHCRVSPKRLS---SAKAWLKDGLVLRRN--------S------DEVLVLDRVQREDAG   72 (371)
Q Consensus        11 ~~~~~~p~~~~-~~~~G~~v~l~C~~~~~~~~---~~~~W~~~~~~~~~~--------~------~~~l~i~~~~~~d~G   72 (371)
                      |+|.+.|+.+. .+..++.++|.|.+....|.   ..+.|.+++..+...        .      .+.|.|..-.-....
T Consensus         2 PsV~l~~Ps~~e~~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~   81 (105)
T d1l6xa1           2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGK   81 (105)
T ss_dssp             CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTC
T ss_pred             CEEEEECCCHHHhhccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCC
Confidence            56666665412 35568899999976554443   568899999877654        1      223333322222334


Q ss_pred             EEEEEEEcCCC
Q psy14542         73 MYQCHVSADDD   83 (371)
Q Consensus        73 ~Y~C~~~~~~~   83 (371)
                      .|+|.+.+...
T Consensus        82 ~ytC~V~H~~l   92 (105)
T d1l6xa1          82 EYKCKVSNKAL   92 (105)
T ss_dssp             CEEEEEECTTS
T ss_pred             EEEEEEEeCCC
Confidence            89999987654

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.22  E-value=0.0022  Score=42.55  Aligned_cols=83  Identities=16%  Similarity=0.255  Sum_probs=46.7

Q ss_pred             eeeecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeEEEEccc------CcCCCeeEEEEEeCCceeEeccceEEE
Q psy14542        106 VVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEVLVLDRV------QREDAGMYQCHIEDGKYHMLSSGELII  178 (371)
Q Consensus       106 ~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~------~~~~~g~y~~~~~~~~~~~~~~~~l~i  178 (371)
                      ..+.+|++++|.|.+.+... .-.+.|++.  .......+...+...      ...-.|.++...++..    ....|.|
T Consensus        10 ~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ--~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~----~~~~L~i   83 (119)
T d1qnzh_          10 ELVKPGASVKMSCKASGYTFTTYPIEWMKQ--NHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSS----STVYLEF   83 (119)
T ss_dssp             CEECTTEEEEEEEEEETCCSSSSCEEEEEE--ETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTT----TEEEEEE
T ss_pred             ceECCCCCEEEEEEEeccCCCCCCcceeee--cCCCcceEeeccCCcccccchhhhhcccceeeccccc----ceeeeee
Confidence            34578999999999987642 246899973  111111222222211      1111232322222111    1135999


Q ss_pred             EEeecCCccceeEEEee
Q psy14542        179 HQVDESDRYRSYQCRGV  195 (371)
Q Consensus       179 ~~~~~~d~~g~y~C~~~  195 (371)
                      .+++.+| ++.|.|...
T Consensus        84 ~~L~~eD-sAvYYCA~~   99 (119)
T d1qnzh_          84 SRLTSDD-SAVYYCAIH   99 (119)
T ss_dssp             EEECGGG-CEEEEEEEC
T ss_pred             cccCccc-eeEEEEEEe
Confidence            9999999 999999654

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.21  E-value=0.00091  Score=44.44  Aligned_cols=85  Identities=15%  Similarity=0.272  Sum_probs=47.6

Q ss_pred             CCceeeecCCcEEEEEEecCCCC-CceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----c
Q psy14542        103 SNQVVVDVGHRIELHCRVSPKRL-SSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----G  174 (371)
Q Consensus       103 ~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~  174 (371)
                      .....+.+|++++|.|.+.+... ...+.|++.  |+.+.    ....+..   .....+.-....+|+.+..+     .
T Consensus         7 sg~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~le----wl~~i~~---~~~~~~y~~~~kgR~tis~d~s~n~v   79 (120)
T d1pg7x1           7 SGPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLE----WIGLVHP---HNGAITYNQKFKDKATLTVDRSSTTA   79 (120)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEE----EEEEEET---TTTEEEECGGGTTTEEEEEETTTTEE
T ss_pred             ECCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceE----EeeecCc---cccchhhhHHhhhcceeeeccCcceE
Confidence            33445588999999999987643 256899873  22221    1111111   01010100001223333321     3


Q ss_pred             eEEEEEeecCCccceeEEEee
Q psy14542        175 ELIIHQVDESDRYRSYQCRGV  195 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~~  195 (371)
                      .|.|.+++.+| ++.|.|...
T Consensus        80 ~L~i~~l~~eD-tA~YYCAr~   99 (120)
T d1pg7x1          80 YIELVRLTSND-SAVYYCARE   99 (120)
T ss_dssp             EEEECSCCGGG-CEEEEEEEE
T ss_pred             EccccccCCCc-ceEEEeeec
Confidence            58899999999 999999754

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00033  Score=45.96  Aligned_cols=65  Identities=14%  Similarity=0.277  Sum_probs=39.9

Q ss_pred             cCCeEEEEEEeecC-CC-CceEEEeCCcccc--cCCce------EEecceEEEeccCCCCCeEEEEEEEcCCCCce
Q psy14542        236 KDESVILPCSAQGN-PL-PTIKWYKQDSPVE--ESDRI------QRIGSSLSISHVEESDSGVWNCVANNSEGQDK  301 (371)
Q Consensus       236 ~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~--~~~~~------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  301 (371)
                      .+..++|.|.+.++ |. ..|+|.+++....  .....      ....+.|.|..-... ...|+|.+.+..+...
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~t~~~~~~~~gtys~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~   93 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLG-TQTYICNVNHKPSNTK   93 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGG-TCCCEEEEEEGGGTEE
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCCCCCEEECCCeECCCCCEEEEEEEEECccccC-CCeEEEEEEeCCCCEE
Confidence            46779999999985 33 4699977664321  11111      112235666655443 4679999998776543

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.20  E-value=0.00095  Score=44.10  Aligned_cols=83  Identities=14%  Similarity=0.232  Sum_probs=47.8

Q ss_pred             ceeeecCCcEEEEEEecCCCC-CceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ceE
Q psy14542        105 QVVVDVGHRIELHCRVSPKRL-SSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GEL  176 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~l  176 (371)
                      ...+.+|+++.|.|.+.+... .-.+.|++.  |+.+    ...-.+.   ..+...+......+++.+..+     ..|
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkgl----ewl~~i~---~~~~~~~y~~s~kgRftiSrD~s~nt~~L   81 (119)
T d1eapb1           9 TELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGL----EWIGYIS---PGNGDIKYNEKFKVKATLTADQSSSTAYM   81 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCE----EEEEEEC---TTTCCEEECGGGTTTEEEEEEGGGTEEEE
T ss_pred             CceECCCCCEEEEEEEccCcccCCCCccceeCCcccc----eeeeecC---CcccchhhhhhhhcceEEEcccCcceEEe
Confidence            444588999999999988643 256899872  2211    1111111   111111111111234444422     358


Q ss_pred             EEEEeecCCccceeEEEee
Q psy14542        177 IIHQVDESDRYRSYQCRGV  195 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~  195 (371)
                      .|.+++.+| .+.|.|...
T Consensus        82 ~~~sL~~eD-TAvYYCAr~   99 (119)
T d1eapb1          82 QLNSLTSED-SAVYFCKRS   99 (119)
T ss_dssp             EECSCCGGG-CEEEEEEEC
T ss_pred             eeecccCCc-ceEEEEEEe
Confidence            899999999 999999643

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.20  E-value=0.00086  Score=44.76  Aligned_cols=84  Identities=19%  Similarity=0.344  Sum_probs=48.1

Q ss_pred             ceeeecCCcEEEEEEecCCCC-CceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ceE
Q psy14542        105 QVVVDVGHRIELHCRVSPKRL-SSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GEL  176 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~l  176 (371)
                      ...+.+|+++.|.|.+.+... .-.+.|++.  ++.+    ...-.|..   .+...+......+|+.+..+     ..|
T Consensus         8 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgl----ewv~~i~~---~~~~~~y~~s~kgR~tis~D~s~~t~yL   80 (124)
T d1zvya1           8 GGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAR----EGVAALYT---HTGNTYYTDSVKGRFTISQDKAKNMAYL   80 (124)
T ss_dssp             CEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCC----EEEEEEET---TTTEEEECGGGTTTEEEEEEGGGTEEEE
T ss_pred             CceECCCCCeEEEEEEcCcccccccccccccCCccce----EEEeeccc---ccccceeccccccccEEecccccceeec
Confidence            344589999999999988643 257899882  2211    11111111   01111111111234444432     358


Q ss_pred             EEEEeecCCccceeEEEeec
Q psy14542        177 IIHQVDESDRYRSYQCRGVN  196 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~~  196 (371)
                      .+.+++.+| ++.|.|....
T Consensus        81 q~~sL~~eD-tAvYYCAr~~   99 (124)
T d1zvya1          81 RMDSVKSED-TAIYTCGATR   99 (124)
T ss_dssp             EECSCCGGG-CEEEEEEECS
T ss_pred             eeccccCCc-ceEEEEeecc
Confidence            899999999 9999997643

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.19  E-value=0.00089  Score=44.68  Aligned_cols=84  Identities=18%  Similarity=0.285  Sum_probs=48.1

Q ss_pred             CceeeecCCcEEEEEEecCCCC-CceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ce
Q psy14542        104 NQVVVDVGHRIELHCRVSPKRL-SSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GE  175 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~  175 (371)
                      ....+.+|++++|.|.+.+... ...+.|++.  |+.+.    ..-.+..   .+...+......+|+.+..+     ..
T Consensus         8 g~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkgle----wl~~i~~---~~~~~~y~~s~kgR~tiS~D~s~nt~~   80 (126)
T d1dfbh1           8 GGGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLE----WVSGISW---DSSSIGYADSVKGRFTISRDNAKNSLY   80 (126)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEE----EEEEECT---TSSSEEECGGGTTTEEEEEETTTTEEE
T ss_pred             CCceECCCCCeEEEEEECCccccCCcceeceeCCCccce----eeeecCc---ccccchhccccccceEEeccCCCcEEE
Confidence            3445589999999999988643 246889882  22111    1111111   01111111111234444432     35


Q ss_pred             EEEEEeecCCccceeEEEee
Q psy14542        176 LIIHQVDESDRYRSYQCRGV  195 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~  195 (371)
                      |.|.+++.+| .+.|.|...
T Consensus        81 L~~~~L~~eD-tavYYCAr~   99 (126)
T d1dfbh1          81 LQMNSLRAED-MALYYCVKG   99 (126)
T ss_dssp             EEECSCCGGG-CEEEEEEEE
T ss_pred             eeeeeeccCc-ceEEEEEec
Confidence            8899999999 999999654

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=0.00019  Score=47.02  Aligned_cols=74  Identities=14%  Similarity=0.105  Sum_probs=41.9

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEeCCEEEee--C----------CeeEEEEccCCcCCCeEEE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRR--N----------SDEVLVLDRVQREDAGMYQ   75 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~--~----------~~~~l~i~~~~~~d~G~Y~   75 (371)
                      .+|+|.+.++. ..-..++.++|.|.+....| ...|.|.+++.....  .          ....|.|..-.- +.+.|+
T Consensus         4 s~PsV~~l~p~-~~~~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~S~L~v~~~~w-~~~~yt   81 (102)
T d1mjuh2           4 TAPSVYPLAPV-CGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-PSQSIT   81 (102)
T ss_dssp             BCCEEEEECCC-C------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTT-TTSCCE
T ss_pred             cCCEEEEECCC-ccccCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccccCCCCEEEEEEEEEehhHc-CCceEE
Confidence            45677755443 23346789999997666555 457999876532110  0          234566655543 356899


Q ss_pred             EEEEcCCCC
Q psy14542         76 CHVSADDDS   84 (371)
Q Consensus        76 C~~~~~~~~   84 (371)
                      |.+.+....
T Consensus        82 C~V~H~~~~   90 (102)
T d1mjuh2          82 CNVAHPASS   90 (102)
T ss_dssp             EEEEEGGGT
T ss_pred             EEEEECCCC
Confidence            999976543

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.19  E-value=0.00089  Score=44.03  Aligned_cols=83  Identities=18%  Similarity=0.271  Sum_probs=47.0

Q ss_pred             ceeeecCCcEEEEEEecCCCC-CceEEEee--CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ceE
Q psy14542        105 QVVVDVGHRIELHCRVSPKRL-SSAKAWLK--DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GEL  176 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~--~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~l  176 (371)
                      ...+.+|+++.|.|.+.+... .-.+.|++  .|+.+.    ..-.|..   .+...+......+++.+..+     ..|
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkgle----wvg~i~~---~~~~t~ya~s~kgRfTiS~D~s~~t~yL   81 (117)
T d1jnhb1           9 AELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLE----WIAAIYP---GDDDARYTQKFKGKATLTADRSSSIVYL   81 (117)
T ss_dssp             CEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEE----EEEEEEG---GGTEEEECTTTTTTEEEEEETTTTEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcce----eeeccCc---cccccccccceeEEEEEeccCccceeee
Confidence            334488999999999998643 25789987  222211    1111110   01111111111234444432     358


Q ss_pred             EEEEeecCCccceeEEEee
Q psy14542        177 IIHQVDESDRYRSYQCRGV  195 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~  195 (371)
                      .|.+++.+| .+.|.|...
T Consensus        82 q~~~L~~eD-TAvYYCAr~   99 (117)
T d1jnhb1          82 QLNSLTSED-SAVYSCSRG   99 (117)
T ss_dssp             EECSCCGGG-CEEEEEEEE
T ss_pred             cccccCCCc-ceEEEEeec
Confidence            899999999 999999653

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.18  E-value=0.00073  Score=45.13  Aligned_cols=84  Identities=13%  Similarity=0.241  Sum_probs=48.0

Q ss_pred             CCceeeecCCcEEEEEEecCCCC-CceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----c
Q psy14542        103 SNQVVVDVGHRIELHCRVSPKRL-SSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----G  174 (371)
Q Consensus       103 ~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~  174 (371)
                      .....+.+|++++|.|.+.+... .-.+.|++.  |+.+    ...-.|..   .+...+......+++.+..+     .
T Consensus         7 sg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkgl----ew~g~i~~---~~~~~~ya~s~kgR~tiS~D~s~nt~   79 (127)
T d1n0xh1           7 SGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRF----EWMGWINP---YNGNKEFSAKFQDRVTFTADTSANTA   79 (127)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCC----EEEEEECT---TTCCEEECTTTTTTEEEEEEGGGTEE
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcc----eeeeecCc---cccccccchhccccceEecccCceEE
Confidence            33445589999999999988643 246899872  2211    11111110   11111111111234444432     3


Q ss_pred             eEEEEEeecCCccceeEEEe
Q psy14542        175 ELIIHQVDESDRYRSYQCRG  194 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~  194 (371)
                      .|.+.+++.+| ++.|.|.-
T Consensus        80 yL~~~~L~~eD-tAvYYCAR   98 (127)
T d1n0xh1          80 YMELRSLRSAD-TAVYYCAR   98 (127)
T ss_dssp             EEEECSCCGGG-CEEEEEEE
T ss_pred             EEEEEccCCCC-ceEEEEEe
Confidence            48899999999 99999964

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.17  E-value=0.00022  Score=48.28  Aligned_cols=76  Identities=13%  Similarity=0.198  Sum_probs=47.9

Q ss_pred             cccceEEEeCCCcE-EEeccCcEEEEEEecCCCC---CCeeEEEeCCEEEeeC--------------CeeEEEEccCCcC
Q psy14542          8 KSSLSIEMSPSGQV-VVDVGHRIELHCRVSPKRL---SSAKAWLKDGLVLRRN--------------SDEVLVLDRVQRE   69 (371)
Q Consensus         8 ~~~~~~~~~p~~~~-~~~~G~~v~l~C~~~~~~~---~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~   69 (371)
                      ...|+|.+.|.... ....++.++|.|.+....|   ...+.|+++|..+...              ..+.|.|..-.-.
T Consensus        13 ~~~PsV~i~pPs~~e~~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~   92 (119)
T d1igtb3          13 LGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWM   92 (119)
T ss_dssp             CCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHH
T ss_pred             CcCCEEEEECCChHHhcccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhC
Confidence            44678888776522 2456889999996655444   4578999999877654              1223333322222


Q ss_pred             CCeEEEEEEEcCCC
Q psy14542         70 DAGMYQCHVSADDD   83 (371)
Q Consensus        70 d~G~Y~C~~~~~~~   83 (371)
                      ....|+|.+.+..-
T Consensus        93 ~g~~ytC~V~H~~l  106 (119)
T d1igtb3          93 SGKEFKCKVNNKDL  106 (119)
T ss_dssp             TTCEEEEEEECTTC
T ss_pred             CCCeEEEEEEECCC
Confidence            33479999997653

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.17  E-value=0.00095  Score=43.27  Aligned_cols=86  Identities=16%  Similarity=0.221  Sum_probs=47.7

Q ss_pred             CceeeecCCcEEEEEEecCCCC-CceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ce
Q psy14542        104 NQVVVDVGHRIELHCRVSPKRL-SSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GE  175 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~  175 (371)
                      ....+.+|++++|.|.+.|... .-.+.|++.  |+.+.    ..-.+....... ..+......+++++..+     ..
T Consensus         8 G~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglE----w~g~i~~~~~~~-~~~ya~~~kgR~tiS~D~s~~t~~   82 (109)
T d2ck0h1           8 GGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLE----WVARIRSKGFNF-ATYYADSVRDRFTISRDDSQSMLY   82 (109)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEE----EEEEECCGGGTT-CEEECTTTTTTEEEEEETTTTEEE
T ss_pred             CCCeECCCCCeEEEEEECCCcccccccccceeCCCccee----cccccccccccc-cceeccccccCceeccccccceeE
Confidence            3445589999999999987643 257899872  22211    111121110000 00100001224444322     35


Q ss_pred             EEEEEeecCCccceeEEEee
Q psy14542        176 LIIHQVDESDRYRSYQCRGV  195 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~  195 (371)
                      |.|.+++.+| ++.|.|.-.
T Consensus        83 L~i~sL~~eD-TAvYYCAr~  101 (109)
T d2ck0h1          83 LQMNNLKTED-TGIYYCVRG  101 (109)
T ss_dssp             EEECSCCGGG-CEEEEEEEE
T ss_pred             ecccCCCHhH-CEEEEEEEc
Confidence            8899999999 999999743

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.16  E-value=0.0011  Score=43.63  Aligned_cols=84  Identities=21%  Similarity=0.296  Sum_probs=47.1

Q ss_pred             CceeeecCCcEEEEEEecCCCC-CceEEEee--CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ce
Q psy14542        104 NQVVVDVGHRIELHCRVSPKRL-SSAKAWLK--DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GE  175 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~--~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~  175 (371)
                      -...+.+|+++.|.|.+.|... .-.+.|+|  .|+.+.    ..-.+..   .+...+......+++.+..+     ..
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLE----wlg~i~~---~~~~~~y~~~~~gR~tis~D~s~~t~y   80 (118)
T d1ct8b1           8 GAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLE----WIAWIYA---GSGGTVYNQHFTDKARLTVDTSSSTAY   80 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEE----EEEEEET---TTCCEEECTTSTTTEEEEEEGGGTEEE
T ss_pred             CCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceE----eeeeccc---cccchhhhhheeeeEEEEecCccceEE
Confidence            3445589999999999988643 25789987  222211    1111110   01111111111223333321     35


Q ss_pred             EEEEEeecCCccceeEEEee
Q psy14542        176 LIIHQVDESDRYRSYQCRGV  195 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~  195 (371)
                      |.|.+++.+| .+.|.|...
T Consensus        81 L~i~~L~~eD-tAvYYCAr~   99 (118)
T d1ct8b1          81 MQFSSLTTED-SAIYYCARY   99 (118)
T ss_dssp             EEECSCCGGG-CEEEEEEEE
T ss_pred             ecccccCCCc-ceEEEEeee
Confidence            8899999999 999999654

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.16  E-value=0.0018  Score=42.93  Aligned_cols=84  Identities=18%  Similarity=0.305  Sum_probs=47.3

Q ss_pred             ceeeecCCcEEEEEEecCCCC-CceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ceE
Q psy14542        105 QVVVDVGHRIELHCRVSPKRL-SSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GEL  176 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~l  176 (371)
                      ...+.+|++++|.|.+.|... .-.+.|++.  |+.+    .....|..   .+...+......+++.+..+     ..|
T Consensus         9 ~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkgl----ewl~~i~~---~~~~~~y~~s~kgR~tis~D~s~nt~~L   81 (123)
T d1mqkh_           9 GDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRL----EWVASINN---GGGRTYYPDTVKGRFTISRDNAKNTLYL   81 (123)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCE----EEEEEECT---TSSCEECCTTTBTTEEEEEEGGGTEEEE
T ss_pred             CceECCCCCEEEEEEECcccCcCCceEeeecCCCcce----eeeeecCc---cccccccchhccEEEEEEecCccccccc
Confidence            344589999999999988643 246889872  2211    11111211   01000000001234444321     358


Q ss_pred             EEEEeecCCccceeEEEeec
Q psy14542        177 IIHQVDESDRYRSYQCRGVN  196 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~~  196 (371)
                      .|.+++.+| .+.|.|....
T Consensus        82 ~i~~L~~eD-tAvYYCAr~~  100 (123)
T d1mqkh_          82 QMSSLKSED-TAMYYCVRHE  100 (123)
T ss_dssp             EECSCCGGG-CEEEEEEEEE
T ss_pred             ceeeeccCc-ccceeEEecC
Confidence            899999999 9999997554

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.16  E-value=0.00011  Score=48.35  Aligned_cols=59  Identities=27%  Similarity=0.437  Sum_probs=40.1

Q ss_pred             EEEeccCcEEEEEEecCC-CCCCeeEEEeC--CE------EEeeC----------------------CeeEEEEccCCcC
Q psy14542         21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKD--GL------VLRRN----------------------SDEVLVLDRVQRE   69 (371)
Q Consensus        21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~--~~------~~~~~----------------------~~~~l~i~~~~~~   69 (371)
                      ..+.+|+++.|.|.++.. .....+.|+|-  |+      .+...                      ....|.|.+++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~~e   89 (117)
T d1b2wh1          10 GVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLRPE   89 (117)
T ss_dssp             CEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeeccccCC
Confidence            579999999999965521 22345677761  10      01100                      4567999999999


Q ss_pred             CCeEEEEEEE
Q psy14542         70 DAGMYQCHVS   79 (371)
Q Consensus        70 d~G~Y~C~~~   79 (371)
                      |++.|.|.-.
T Consensus        90 DTAvYYCAr~   99 (117)
T d1b2wh1          90 DTAVYYCARG   99 (117)
T ss_dssp             GCEEEECCEE
T ss_pred             cceEEEEccc
Confidence            9999999754

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.15  E-value=0.00095  Score=43.07  Aligned_cols=63  Identities=16%  Similarity=0.215  Sum_probs=37.4

Q ss_pred             CCeEEEEEEeecCCC--CceEEEeCCcccccC----C---c-eEEecceEE---EeccCCCCCeEEEEEEEcCCCC
Q psy14542        237 DESVILPCSAQGNPL--PTIKWYKQDSPVEES----D---R-IQRIGSSLS---ISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       237 g~~~~l~C~~~~~p~--~~v~W~~~~~~~~~~----~---~-~~~~~~~l~---i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      ...++|.|.+.|+.+  ..|.|.+||..+...    .   . ....++++.   .-.+...+...|+|.+.+....
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s~~   89 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDGGLEHVYSCRVKGIATG   89 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECTTCGGGEEEEEEEGGGT
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECCCCCCEEEEEEEeCCCC
Confidence            457899999999544  369999998765321    0   0 111122221   1123445567899999865443

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.13  E-value=0.0012  Score=44.02  Aligned_cols=85  Identities=15%  Similarity=0.184  Sum_probs=48.2

Q ss_pred             CceeeecCCcEEEEEEecCCCC-CceEEEee--CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ce
Q psy14542        104 NQVVVDVGHRIELHCRVSPKRL-SSAKAWLK--DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GE  175 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~--~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~  175 (371)
                      ....+.+|+++.|.|.+.+... .-.+.|++  .|+.+.    ..-.+..   .+...+......+++.+..+     ..
T Consensus         8 g~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkgle----w~g~i~~---~~~~~~y~~s~kgR~tiSrD~s~~t~y   80 (127)
T d2fx7h1           8 GAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLE----WMGGVIP---LLTITNYAPRFQGRITITADRSTSTAY   80 (127)
T ss_dssp             CCEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEE----EEEEEEG---GGTEEEECGGGTTTEEEEEETTTTEEE
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcce----eeeccCc---ccccccccceeeeeEEEeccCccceEe
Confidence            3344588999999999988643 24689987  222221    1111111   00111111111234444432     35


Q ss_pred             EEEEEeecCCccceeEEEeec
Q psy14542        176 LIIHQVDESDRYRSYQCRGVN  196 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~~  196 (371)
                      |.+.+++.+| .+.|.|....
T Consensus        81 L~~~sL~~eD-TavYYCAR~~  100 (127)
T d2fx7h1          81 LELNSLRPED-TAVYYCAREG  100 (127)
T ss_dssp             EEECSCCGGG-CEEEEEEEEE
T ss_pred             eeecccCccc-ceEEEEeecc
Confidence            8899999999 9999997543

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.13  E-value=0.00084  Score=44.40  Aligned_cols=86  Identities=15%  Similarity=0.239  Sum_probs=49.2

Q ss_pred             CceeeecCCcEEEEEEecCCCC-CceEEEee--CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ce
Q psy14542        104 NQVVVDVGHRIELHCRVSPKRL-SSAKAWLK--DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GE  175 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~--~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~  175 (371)
                      ....+.+|+++.|.|.+.+... ...+.|++  .|+.+.    ..-.+.... ++...+......+|+.+..+     ..
T Consensus         8 G~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglE----wv~~i~~~~-~~~~t~Ya~s~kgR~tiSrD~s~nt~y   82 (121)
T d1nfdf1           8 GGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLE----WVGRIKNIP-NNYATEYADSVRGRFTISRDDSRNSIY   82 (121)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEE----EEEEECCTT-TTTCEEECGGGTTTBCCEECTTTSEEE
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccce----eeeeecccc-cccccccchheeeeeEEccccccceee
Confidence            3445589999999999998754 24678987  232221    111121111 11111111112335554432     34


Q ss_pred             EEEEEeecCCccceeEEEee
Q psy14542        176 LIIHQVDESDRYRSYQCRGV  195 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~  195 (371)
                      |.+.+++.+| .+.|.|...
T Consensus        83 L~~~~L~~eD-TAvYYCAr~  101 (121)
T d1nfdf1          83 LQMNRLRVDD-TAIYYCTRA  101 (121)
T ss_dssp             EEEESCCGGG-CEECEEEEE
T ss_pred             ceecccCCCc-ceEEEEecc
Confidence            8999999999 999999654

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.12  E-value=0.0013  Score=43.43  Aligned_cols=85  Identities=15%  Similarity=0.244  Sum_probs=48.2

Q ss_pred             CCceeeecCCcEEEEEEecCCCC-CceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----c
Q psy14542        103 SNQVVVDVGHRIELHCRVSPKRL-SSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----G  174 (371)
Q Consensus       103 ~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~  174 (371)
                      .-...+.+|+++.|.|.+.+... .-.+.|.+.  |+.+.-    .-.+.   ..+...+......+++.+..+     .
T Consensus         7 sg~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEw----vg~i~---~~~~~~~y~~s~kgRftiS~D~s~nt~   79 (120)
T d1ad9b1           7 SGAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEW----IGWID---PGSGNTKYNEKFKGRATLTVDTSTNTA   79 (120)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEE----EEEEE---TTTTEEEECGGGBTTEEEEEETTTTEE
T ss_pred             ECCceECCCCCEEEEEEEcCCCCcCCccccceECCCcccee----eeecC---CcccceeeccceeeeEEEEecCcceEE
Confidence            33445689999999999988643 256899872  221111    00110   011111111111234444422     3


Q ss_pred             eEEEEEeecCCccceeEEEee
Q psy14542        175 ELIIHQVDESDRYRSYQCRGV  195 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~~  195 (371)
                      .|.+.+++.+| .+.|.|...
T Consensus        80 ~L~m~~L~~eD-TAvYYCAr~   99 (120)
T d1ad9b1          80 YMELSSLRSED-TAFYFCARE   99 (120)
T ss_dssp             EEEECSCCGGG-CEEEEEEEE
T ss_pred             eccccccCCCc-ceEEEEEEc
Confidence            58899999999 999999754

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.12  E-value=0.0012  Score=44.02  Aligned_cols=83  Identities=13%  Similarity=0.209  Sum_probs=47.3

Q ss_pred             CceeeecCCcEEEEEEecCCCC-CceEEEee--CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ce
Q psy14542        104 NQVVVDVGHRIELHCRVSPKRL-SSAKAWLK--DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GE  175 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~--~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~  175 (371)
                      -...+.+|+++.|.|.+.+... ...+.|++  .|+.+.    ..-.|..   .+...+.-....+|+.+..+     ..
T Consensus         7 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglE----wvg~i~~---~~~~~~y~~s~kgRfTiS~D~s~nt~y   79 (126)
T d1lmka1           7 GTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLE----WIGKILP---GGGSNTYNDKFKGKATFTADTSSNIAY   79 (126)
T ss_dssp             CCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEE----EEEEEET---TTTEEEECGGGTTTEEEEEETTTTEEE
T ss_pred             CCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccce----eeeecCc---cccchhhhhhhccceEEEecCCccEEE
Confidence            3445589999999999988643 25689987  222111    1111110   01111111111234444322     35


Q ss_pred             EEEEEeecCCccceeEEEe
Q psy14542        176 LIIHQVDESDRYRSYQCRG  194 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~  194 (371)
                      |.+.+++.+| .+.|.|..
T Consensus        80 L~m~~L~~eD-TAvYYCAr   97 (126)
T d1lmka1          80 MQLSSLTSED-SAVYYCAR   97 (126)
T ss_dssp             EEECSCCGGG-CEEEEEEE
T ss_pred             eeecccCCCc-ceEEEEee
Confidence            8899999999 99999964

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.11  E-value=0.00056  Score=46.16  Aligned_cols=66  Identities=20%  Similarity=0.313  Sum_probs=43.2

Q ss_pred             eecCCeEEEEEEeecC-CC---CceEEEeCCcccccCCc---eEEec------ceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        234 VKKDESVILPCSAQGN-PL---PTIKWYKQDSPVEESDR---IQRIG------SSLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~-p~---~~v~W~~~~~~~~~~~~---~~~~~------~~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      ...++.++|.|.+.++ |.   .+++|+++|..+.....   ....+      +.|.|..-.......|+|.|.+..-.
T Consensus        29 ~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~l~  107 (119)
T d1igtb3          29 LMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLP  107 (119)
T ss_dssp             HCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCS
T ss_pred             cccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECCCC
Confidence            3557889999999884 42   46899999986643321   11222      34555555555667899999986543

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=0.00016  Score=47.28  Aligned_cols=74  Identities=15%  Similarity=0.113  Sum_probs=45.5

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC------------CeeEEEEccCCcCCCeEEE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN------------SDEVLVLDRVQREDAGMYQ   75 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~------------~~~~l~i~~~~~~d~G~Y~   75 (371)
                      ..|+|.+.++. ..-..++.++|.|.+...+| ...|.|.+++......            ....|.|..-.. +.|.|+
T Consensus         4 ~aP~V~~l~p~-~~~~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w-~~~~yt   81 (101)
T d1kcvh2           4 TAPSVFPLVPG-SATAAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTW-PSASVT   81 (101)
T ss_dssp             BCCEEEEECCC-SCCTTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTT-TTSCCE
T ss_pred             CCCEEEeECCC-ccccCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhc-CCCeEE
Confidence            34666665443 22346889999997666555 4679998876432111            234566554433 467899


Q ss_pred             EEEEcCCCC
Q psy14542         76 CHVSADDDS   84 (371)
Q Consensus        76 C~~~~~~~~   84 (371)
                      |.+.+....
T Consensus        82 C~V~H~~~~   90 (101)
T d1kcvh2          82 CLVAHPKSS   90 (101)
T ss_dssp             EEEEEGGGT
T ss_pred             EEEEeCCCC
Confidence            999876543

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.11  E-value=0.0013  Score=43.70  Aligned_cols=83  Identities=16%  Similarity=0.232  Sum_probs=47.6

Q ss_pred             ceeeecCCcEEEEEEecCCCC-CceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ceE
Q psy14542        105 QVVVDVGHRIELHCRVSPKRL-SSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GEL  176 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~l  176 (371)
                      ...+.+|+++.|.|.+.+... .-.+.|++.  |+.+.    ..-.|..   .....+......+|+.+..+     ..|
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkgle----wl~~i~~---~~~~~~Y~~s~kgRftiSrD~s~~t~yL   81 (122)
T d1bz7b1           9 GGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLE----WVAYISS---GGSSINYADTVKGRFTISRDNPKNTLFL   81 (122)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEE----EEEEECS---SSSCEEECGGGTTTEEEEEEGGGTEEEE
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceEccccCCCccee----eeeecCc---ccccccccceeeeeEEEeccCCccEeEe
Confidence            444588999999999988643 256899872  22111    1111111   01111111111234444432     358


Q ss_pred             EEEEeecCCccceeEEEee
Q psy14542        177 IIHQVDESDRYRSYQCRGV  195 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~  195 (371)
                      .+.+++.+| .+.|.|...
T Consensus        82 ~m~sL~~eD-TAvYYCAr~   99 (122)
T d1bz7b1          82 QMTSLRSED-TAIYYCTRG   99 (122)
T ss_dssp             EECSCCGGG-CEEEEEEEE
T ss_pred             eeeeecccC-ceEEEeecC
Confidence            899999999 999999754

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.10  E-value=0.0011  Score=43.86  Aligned_cols=85  Identities=14%  Similarity=0.219  Sum_probs=48.1

Q ss_pred             CceeeecCCcEEEEEEecCCCC-CceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ce
Q psy14542        104 NQVVVDVGHRIELHCRVSPKRL-SSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GE  175 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~  175 (371)
                      ....+.+|++++|.|.+.+... .-.+.|++.  |+.+.    ..-.+..   .+...+......+|+.+..+     ..
T Consensus         9 g~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglE----wlg~i~~---~~~~~~ya~s~kgR~tiS~D~s~ntvy   81 (122)
T d1vgeh1           9 GAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLE----WMGWISA---GTGNTKYSQKFRGRVTFTRDTSATTAY   81 (122)
T ss_dssp             CCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEE----EEEEEET---TTCCEEECGGGTTTEEEEEETTTTEEE
T ss_pred             CCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCcee----eeeeecC---cccccccccceeEeeEEeccCCcceee
Confidence            3445589999999999998753 256899872  22111    1111110   00000000111234444432     24


Q ss_pred             EEEEEeecCCccceeEEEeec
Q psy14542        176 LIIHQVDESDRYRSYQCRGVN  196 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~~  196 (371)
                      |.|.+++.+| ++.|.|....
T Consensus        82 L~~~~L~~eD-tA~YYCAr~~  101 (122)
T d1vgeh1          82 MGLSSLRPED-TAVYYCARDP  101 (122)
T ss_dssp             EEECSCCGGG-CEEEEEEEET
T ss_pred             ecccccCCCc-ceEEEEeecC
Confidence            8899999999 9999997653

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.10  E-value=0.002  Score=43.29  Aligned_cols=84  Identities=20%  Similarity=0.351  Sum_probs=48.9

Q ss_pred             ceeeecCCcEEEEEEecCCCC-CceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ceE
Q psy14542        105 QVVVDVGHRIELHCRVSPKRL-SSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GEL  176 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~l  176 (371)
                      ...+.+|+++.|.|.+.|... ...+.|++.  |+.+.    ..-.|..   .+...+.-....+|+.+..+     ..|
T Consensus         9 ~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLE----Wlg~I~~---~~~~~~Ya~s~kgRfTiSrD~s~~t~yL   81 (135)
T d1ieha_           9 GGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLE----WVSTINP---GDGSTYYADSVKGRFTISRDNAKNTLYL   81 (135)
T ss_dssp             CCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCE----EEEEECS---SSCCEEECSTTTTTEEEEECTTTCCEEE
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceeccccCCCCcee----eeeccCC---ccccccccccceEeEEEeccCCCceeEe
Confidence            344589999999999988643 256899872  22111    1111211   11111111111335555432     358


Q ss_pred             EEEEeecCCccceeEEEeec
Q psy14542        177 IIHQVDESDRYRSYQCRGVN  196 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~~  196 (371)
                      .|.+++.+| .+.|.|....
T Consensus        82 ~i~~L~~eD-TAvYYCAr~~  100 (135)
T d1ieha_          82 QMNSLKSED-TAVYYCAKYS  100 (135)
T ss_dssp             EEESCCSSS-CEEEEEEEBS
T ss_pred             cEeeeCccc-ceeeEEEEec
Confidence            899999999 9999997653

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.10  E-value=0.00078  Score=43.99  Aligned_cols=74  Identities=16%  Similarity=0.171  Sum_probs=44.6

Q ss_pred             ccceEEEeCCCcEEEeccCcEEEEEEecCCCCC--CeeEEEeCCEEEeeC-------------CeeEEEEccCCcCCCeE
Q psy14542          9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLS--SAKAWLKDGLVLRRN-------------SDEVLVLDRVQREDAGM   73 (371)
Q Consensus         9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~--~~~~W~~~~~~~~~~-------------~~~~l~i~~~~~~d~G~   73 (371)
                      ..|+|...+..  ....++.++|.|.+....|.  ..+.|.+|+..+...             ..+.|.|....-.....
T Consensus         4 ~~PsV~pl~~~--~~~~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~   81 (102)
T d2fbjh2           4 RNPTIYPLTLP--PALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGES   81 (102)
T ss_dssp             BCCEEEEECCC--SSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCE
T ss_pred             CCCEEeeeCCC--cccCCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCE
Confidence            45666544332  13457889999966654543  458898876544322             23345565554444457


Q ss_pred             EEEEEEcCCCC
Q psy14542         74 YQCHVSADDDS   84 (371)
Q Consensus        74 Y~C~~~~~~~~   84 (371)
                      |+|.+.+....
T Consensus        82 ytC~V~H~s~~   92 (102)
T d2fbjh2          82 VKCSVQHDSNP   92 (102)
T ss_dssp             EEEEEEETTSC
T ss_pred             EEEEEEECCCC
Confidence            99999875543

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.09  E-value=0.0014  Score=43.23  Aligned_cols=86  Identities=17%  Similarity=0.311  Sum_probs=48.3

Q ss_pred             ceeeecCCcEEEEEEecCCCC-CceEEEee--CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ceE
Q psy14542        105 QVVVDVGHRIELHCRVSPKRL-SSAKAWLK--DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GEL  176 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~--~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~l  176 (371)
                      ...+.+|++++|.|.+.+... .-.+.|++  .|+.+.    ....+.... .....+.-....+|+.+..+     ..|
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglE----wv~~i~~~~-~~~~~~ya~s~kgRftiS~D~s~n~~~L   83 (120)
T d1dlfh_           9 GGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLE----WVAEIRNKA-NNHATYYAESVKGRFTISRDDSKRRVYL   83 (120)
T ss_dssp             CCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEE----EEEEECCGG-GTTCEEECTTTTTTEEEEEETTTTEEEE
T ss_pred             CceECCCCCeEEEEEECCccCcCCceEeeeeCCCccee----eeeeccccc-cccceeechhceecceeecccccceecc
Confidence            344588999999999987632 25789987  232221    111221110 01111111111234444432     358


Q ss_pred             EEEEeecCCccceeEEEeec
Q psy14542        177 IIHQVDESDRYRSYQCRGVN  196 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~~  196 (371)
                      .|.+++.+| ++.|.|....
T Consensus        84 ~~~~L~~eD-tAvYYCA~~~  102 (120)
T d1dlfh_          84 QMNTLRAED-TGIYYCTGIY  102 (120)
T ss_dssp             EECSCCGGG-CEEEEEEEEB
T ss_pred             ceeeccCCC-ceEEEeeEec
Confidence            899999999 9999997543

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.09  E-value=0.0023  Score=42.64  Aligned_cols=84  Identities=15%  Similarity=0.224  Sum_probs=46.1

Q ss_pred             ceeeecCCcEEEEEEecCCCCC---ceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ceE
Q psy14542        105 QVVVDVGHRIELHCRVSPKRLS---SAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GEL  176 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~l  176 (371)
                      ...+.+|++++|.|.+.|....   ..+.|++.  ...........+..-.   ...|. ....+++.+..+     ..|
T Consensus         9 ~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ--~pGkgle~i~~i~~~~---~~~y~-~~~k~Rftis~D~s~~~~~L   82 (123)
T d1r0ah1           9 PGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQ--PSGKGLEWLATIWWDD---DNRYN-PSLKSRLTVSKDTSNNQAFL   82 (123)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEE--ETTSCCEEEEEEETTS---CCEEC-TTTGGGEEEEEEGGGTEEEE
T ss_pred             CceECCCCCeEEEEEEcCCccCCCCCeeecccc--CCCcceEeeeeecCCc---ccccc-ceeeEEEEccccccceeEEc
Confidence            3345789999999999875421   24689872  1111112222222211   11110 000123433321     358


Q ss_pred             EEEEeecCCccceeEEEee
Q psy14542        177 IIHQVDESDRYRSYQCRGV  195 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~  195 (371)
                      .|.+++.+| ++.|.|...
T Consensus        83 ~i~sl~~eD-sAvYyCAr~  100 (123)
T d1r0ah1          83 NMMTVETAD-TAIYYCAQS  100 (123)
T ss_dssp             EECSCCGGG-CEEEEEEEE
T ss_pred             ceeeccccc-ceEEeeccc
Confidence            999999999 999999744

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.001  Score=40.14  Aligned_cols=64  Identities=23%  Similarity=0.420  Sum_probs=40.1

Q ss_pred             ecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542        235 KKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY  308 (371)
Q Consensus       235 ~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  308 (371)
                      ..|..+.|+|...  ..-.|.|.+++..     .....+.+|.+.--...|+|+|+|. .  .|+.-....|.+
T Consensus        19 ~~~~~V~L~C~t~--eE~~I~W~kd~~s-----e~~~~GntltV~VkE~~~aGnYTCh-k--~g~~Lnht~lLi   82 (87)
T d3d85d1          19 APGEMVVLTCDTP--EEDGITWTLDQSS-----EVLGSGKTLTIQVKEFGDAGQYTCH-K--GGEVLSHSLLLL   82 (87)
T ss_dssp             CCCEEEEEECSSS--CCSSCEEEETTCC-----CCCEESSEEEEEECSGGGCEEEEEE-E--TTEEEEEEEEEE
T ss_pred             CCccEEEEecCCC--cccccEEeeCCcc-----ccccCCCEEEEEEEeccCCcceeEe-C--CCcEeeeEEEEE
Confidence            3466799999543  2247999998754     1112356788776566799999997 2  355433333333

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.07  E-value=0.0012  Score=44.16  Aligned_cols=84  Identities=18%  Similarity=0.222  Sum_probs=47.8

Q ss_pred             CceeeecCCcEEEEEEecCCCC-CceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ce
Q psy14542        104 NQVVVDVGHRIELHCRVSPKRL-SSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GE  175 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~  175 (371)
                      ....+.+|++++|.|.+.|... .-.+.|++.  |+.+.    ....|..   .....+.-....+++.+..+     ..
T Consensus         8 g~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkgle----wlg~i~~---~~~~~~ya~s~~~R~tis~D~s~n~vy   80 (125)
T d1rihh1           8 GNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLE----WIGYIDP---ATAYTESNQKFKDKAILTADRSSNTAF   80 (125)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEE----EEEEEET---TTTEEEECGGGTTTEEEEEETTTTEEE
T ss_pred             CCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccce----eeeecCC---ccccccccccceeeeEEecccCcceEe
Confidence            3445589999999999988643 246899872  22211    1111110   11111111111234444322     35


Q ss_pred             EEEEEeecCCccceeEEEee
Q psy14542        176 LIIHQVDESDRYRSYQCRGV  195 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~  195 (371)
                      |.|.+++.+| ++.|.|...
T Consensus        81 L~l~sL~~eD-tAvYYCAR~   99 (125)
T d1rihh1          81 MYLNSLTSED-SAVYYCARE   99 (125)
T ss_dssp             EEECSCCGGG-CEEEEEEEE
T ss_pred             eeeeccCccc-ceEEEEeee
Confidence            8899999999 999999754

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.06  E-value=0.0012  Score=44.76  Aligned_cols=85  Identities=15%  Similarity=0.262  Sum_probs=48.2

Q ss_pred             ceeeecCCcEEEEEEecCCCCC---ceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ceE
Q psy14542        105 QVVVDVGHRIELHCRVSPKRLS---SAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GEL  176 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~l  176 (371)
                      ...+.+|++++|.|.+.+....   ..+.|++...  .........+....   ...|. ....+|+.+..+     ..|
T Consensus         9 ~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~p--G~~le~l~~i~~~~---~~~y~-~~~k~Rftis~d~s~~~~~L   82 (132)
T d1tjgh1           9 PPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPP--GKALEWLAIIYSDD---DKRYS-PSLNTRLTITKDTSKNQVVL   82 (132)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECT--TSCCEEEEEEETTS---CEEEC-GGGTTTEEEEEETTTTEEEE
T ss_pred             CeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECC--CcccEEEEEecCCC---ccEee-eeeeecceecccccccEEEc
Confidence            3445789999999999876431   2588997311  11112223332211   10110 011234444321     358


Q ss_pred             EEEEeecCCccceeEEEeec
Q psy14542        177 IIHQVDESDRYRSYQCRGVN  196 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~~  196 (371)
                      .|.+++.+| ++.|.|....
T Consensus        83 ~i~~l~~eD-tAvYYCAr~~  101 (132)
T d1tjgh1          83 VMTRVSPVD-TATYFCAHRR  101 (132)
T ss_dssp             EECSCCGGG-CEEEEEEEEC
T ss_pred             ccccCCccc-ceEEEEEEec
Confidence            999999999 9999997553

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.0005  Score=45.06  Aligned_cols=66  Identities=11%  Similarity=0.215  Sum_probs=41.8

Q ss_pred             eecCCeEEEEEEeecC-CC---CceEEEeCCcccccCCceE---Ee------cceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542        234 VKKDESVILPCSAQGN-PL---PTIKWYKQDSPVEESDRIQ---RI------GSSLSISHVEESDSGVWNCVANNSEGQ  299 (371)
Q Consensus       234 ~~~g~~~~l~C~~~~~-p~---~~v~W~~~~~~~~~~~~~~---~~------~~~l~i~~~~~~d~G~Y~C~a~n~~g~  299 (371)
                      +..++.++|.|.+.|. |.   ..+.|.+++..........   ..      .+.|.|..-..+....|+|++.+..-.
T Consensus        13 l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~~l~   91 (103)
T d1fp5a1          13 LFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLP   91 (103)
T ss_dssp             HHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEECSSCS
T ss_pred             HhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCC
Confidence            4557788999999984 43   3567888887654331111   11      234555555555577999999986543

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.05  E-value=0.0012  Score=43.24  Aligned_cols=83  Identities=17%  Similarity=0.236  Sum_probs=47.7

Q ss_pred             ceeeecCCcEEEEEEecCCCC-CceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ceE
Q psy14542        105 QVVVDVGHRIELHCRVSPKRL-SSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GEL  176 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~l  176 (371)
                      ...+.+|++++|.|.+.+... ...+.|++.  |+.+    .....+...   ....+......+|+.+..+     ..|
T Consensus         9 ~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkgl----Ewv~~i~~~---~~~~~y~~s~kgRftiSrD~s~nt~~L   81 (114)
T d1indh1           9 GDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRL----EWVATTLSG---GGFTFYSASVKGRFTISRDNAQNNLYL   81 (114)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCE----EEEEEECST---TCCEEECTTTTTTEEEEEETTTTEEEE
T ss_pred             CceECCCCCEEEEEEECccCccCCceeccccCCCCcc----EEeeecccc---cchhhhhhhheeeEEEeccCccceeee
Confidence            344589999999999988643 256889872  2211    111122111   0001111111234444432     358


Q ss_pred             EEEEeecCCccceeEEEee
Q psy14542        177 IIHQVDESDRYRSYQCRGV  195 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~  195 (371)
                      .|.+++.+| .+.|.|...
T Consensus        82 ~~~~L~~eD-tAvYYCA~~   99 (114)
T d1indh1          82 QLNSLRSED-TALYFCASH   99 (114)
T ss_dssp             EECSCCGGG-CEEEEEECG
T ss_pred             eeeeeccCc-ccEEEECCC
Confidence            999999999 999999754

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.05  E-value=0.00065  Score=44.90  Aligned_cols=83  Identities=17%  Similarity=0.253  Sum_probs=48.7

Q ss_pred             CceeeecCCcEEEEEEecCCCCC--ceEEEee--CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----c
Q psy14542        104 NQVVVDVGHRIELHCRVSPKRLS--SAKAWLK--DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----G  174 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~~~--~~v~W~~--~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~  174 (371)
                      ....+.+|+++.|.|.+.|....  -.+.|+|  .|+.+.    ....+..    +...+......+|+.+..+     .
T Consensus         8 G~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglE----wig~i~~----~~~t~y~~s~kgR~TiS~D~s~nt~   79 (119)
T d1ncwh1           8 GPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLE----WMGYINY----SGFTSHNPSLKSRISITRDTSKNQF   79 (119)
T ss_dssp             SCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEE----EEEEEET----TSCEEECGGGTTTEEEEEETTTTEE
T ss_pred             CCcEECCCCCEEEEEEEccccccCCCccccceECCCccee----eeeeccc----cccchhchhccccceEeccccccee
Confidence            34455899999999999987541  3468887  232221    1122211    1111211112345555432     3


Q ss_pred             eEEEEEeecCCccceeEEEee
Q psy14542        175 ELIIHQVDESDRYRSYQCRGV  195 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~~  195 (371)
                      .|.+.+++.+| .+.|.|...
T Consensus        80 ~L~~~sL~~eD-TAvYYCAr~   99 (119)
T d1ncwh1          80 FLQLNSVTTED-TATYYCAGL   99 (119)
T ss_dssp             EEEECSCCGGG-CEEEEEEEE
T ss_pred             eccccccccCC-ceEEEEeEe
Confidence            58899999999 999999644

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00019  Score=47.22  Aligned_cols=72  Identities=15%  Similarity=0.157  Sum_probs=42.9

Q ss_pred             eEEEeCCCcEEEeccCcEEEEEEecCCCCC---CeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeEE
Q psy14542         12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLS---SAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGMY   74 (371)
Q Consensus        12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~---~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~Y   74 (371)
                      ++.+.|+....+..++.++|.|.+...+|.   ..+.|++++......              ..+.|.|..-.-.....|
T Consensus         2 sv~l~pPs~~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~   81 (103)
T d1fp5a1           2 SAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETY   81 (103)
T ss_dssp             EEEEECCCHHHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCE
T ss_pred             EEEEeCcCHHHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeE
Confidence            355556553456678899999977655554   467788876544322              123343332222224589


Q ss_pred             EEEEEcCCC
Q psy14542         75 QCHVSADDD   83 (371)
Q Consensus        75 ~C~~~~~~~   83 (371)
                      +|.+.+...
T Consensus        82 tC~V~H~~l   90 (103)
T d1fp5a1          82 QCRVTHPHL   90 (103)
T ss_dssp             EEEEECSSC
T ss_pred             EEEEEECCC
Confidence            999987543

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.04  E-value=0.0012  Score=43.96  Aligned_cols=83  Identities=18%  Similarity=0.276  Sum_probs=47.3

Q ss_pred             CceeeecCCcEEEEEEecCCCC-CceEEEee--CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ce
Q psy14542        104 NQVVVDVGHRIELHCRVSPKRL-SSAKAWLK--DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GE  175 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~--~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~  175 (371)
                      ....+.+|+++.|.|.+.|... ...+.|++  .|+.+.-    .-.+.   ......+.-....+|+.+..+     ..
T Consensus         8 g~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglew----ig~i~---~~~~~~~ya~s~kgR~tiSrD~s~~t~y   80 (124)
T d2b1hh1           8 GAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEW----MGIFY---PGDSDSRYSPSFEGQVTMSADRSTNTAH   80 (124)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEE----EEEEE---TTTTEEEECTTTTTTCEEEEETTTTEEE
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceee----eeecC---cccccccccccceeeEEEeecCCCcEEE
Confidence            3445589999999999998653 24689987  2222111    11111   001111111111234444432     35


Q ss_pred             EEEEEeecCCccceeEEEe
Q psy14542        176 LIIHQVDESDRYRSYQCRG  194 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~  194 (371)
                      |.+.+++.+| .+.|.|..
T Consensus        81 L~~~~L~~eD-TA~YYCAR   98 (124)
T d2b1hh1          81 LQWSSLKPSD-TALYYCAR   98 (124)
T ss_dssp             EEESSCCGGG-CEEEEEEE
T ss_pred             Eeeecccccc-ceEEEEee
Confidence            8899999999 99999954

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.03  E-value=0.0012  Score=44.26  Aligned_cols=86  Identities=17%  Similarity=0.245  Sum_probs=48.4

Q ss_pred             CCceeeecCCcEEEEEEecCCCC-CceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----c
Q psy14542        103 SNQVVVDVGHRIELHCRVSPKRL-SSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----G  174 (371)
Q Consensus       103 ~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~  174 (371)
                      .....+.+|+++.|.|.+.+... .-.+.|++.  ++.+    ...-.+..   .+...+......+++.+..+     .
T Consensus         7 sG~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkgl----ewig~i~~---~~~~~~ya~s~kgR~tiS~D~s~~t~   79 (128)
T d2nxyd1           7 SGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGL----EWMGRIIT---ILDVAHYAPHLQGRVTITADKSTSTV   79 (128)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCC----EEEEEEET---TTTEEEECTTTTTTEEEEEETTTTEE
T ss_pred             ECCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcce----eeeeecCC---cccccccccceeEEEEEeecCCCceE
Confidence            33445589999999999998754 245788872  2211    11111110   00111111111234444322     3


Q ss_pred             eEEEEEeecCCccceeEEEeec
Q psy14542        175 ELIIHQVDESDRYRSYQCRGVN  196 (371)
Q Consensus       175 ~l~i~~~~~~d~~g~y~C~~~~  196 (371)
                      .|.+.+++.+| .+.|.|....
T Consensus        80 yL~~~sL~~eD-TA~YYCAr~~  100 (128)
T d2nxyd1          80 YLELRNLRSDD-TAVYFCAGVY  100 (128)
T ss_dssp             EEEECSCCGGG-CEEEEEEEEE
T ss_pred             EeeeeeccccC-ceEEEEeEEe
Confidence            58899999999 9999998654

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.02  E-value=0.0013  Score=43.55  Aligned_cols=83  Identities=18%  Similarity=0.336  Sum_probs=47.7

Q ss_pred             ceeeecCCcEEEEEEecCCCC-CceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ceE
Q psy14542        105 QVVVDVGHRIELHCRVSPKRL-SSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GEL  176 (371)
Q Consensus       105 ~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~l  176 (371)
                      ...+.+|++++|.|.+.+... ...+.|++.  |+.+    ...-.+..   .....+.-....+++.+..+     ..|
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkgl----ewv~~i~~---~~~~~~Y~~s~kgRftiSrD~s~~t~yL   81 (121)
T d2p49b1           9 GGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKER----EGVAAMDS---GGGGTLYADSVKGRFTISRDKGKNTVYL   81 (121)
T ss_dssp             CEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCC----EEEEEEET---TSCSCEECGGGTTTEEEECTTSTTEEEE
T ss_pred             CceECCCCCeEEEEEEcCCCcccCceeeccCCCCCce----eeeeecCC---cccccccccceeEeEEEeecCCceEEEE
Confidence            344589999999999987643 257889873  2211    11111211   01111111111235555432     358


Q ss_pred             EEEEeecCCccceeEEEee
Q psy14542        177 IIHQVDESDRYRSYQCRGV  195 (371)
Q Consensus       177 ~i~~~~~~d~~g~y~C~~~  195 (371)
                      .|.+++.+| .+.|.|...
T Consensus        82 q~~~L~~eD-tAvYYCAr~   99 (121)
T d2p49b1          82 QMDSLKPED-TATYYCAAG   99 (121)
T ss_dssp             EECSCCGGG-CEEEEEEES
T ss_pred             Eeeeccccc-eeEEeeecc
Confidence            899999999 999999754

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.02  E-value=0.0016  Score=43.17  Aligned_cols=84  Identities=21%  Similarity=0.322  Sum_probs=48.1

Q ss_pred             CceeeecCCcEEEEEEecCCCC-CceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ce
Q psy14542        104 NQVVVDVGHRIELHCRVSPKRL-SSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GE  175 (371)
Q Consensus       104 ~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~  175 (371)
                      ....+.+|+++.|.|.+.+... .-.+.|++.  |+.+    ...-.|..   .+...+......+++.+..+     ..
T Consensus         8 G~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkgl----Ewv~~i~~---~~~~~~y~~s~kgR~tiS~D~s~~t~~   80 (124)
T d1yedb1           8 GPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGL----EWIARIYP---GTGGTYYNEKFKGKATLTADKSSSTAY   80 (124)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCC----EEEEEEET---TTTEEEECGGGBTTEEEEEETTTTEEE
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCccccceECCCCce----eeeeeccc---cccccccccccceeEEEEccCCcceEE
Confidence            3444589999999999988643 256899872  2211    11111111   01111111111234444432     35


Q ss_pred             EEEEEeecCCccceeEEEee
Q psy14542        176 LIIHQVDESDRYRSYQCRGV  195 (371)
Q Consensus       176 l~i~~~~~~d~~g~y~C~~~  195 (371)
                      |.+.+++.+| .+.|.|...
T Consensus        81 L~~~sL~~eD-TAvYYCAR~   99 (124)
T d1yedb1          81 MQLSSLKSED-SAVYFCTRW   99 (124)
T ss_dssp             EEEESCCGGG-CEEEEEEEC
T ss_pred             ecccccCCCc-ceEEEeccc
Confidence            8899999999 999999754

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.01  E-value=0.00028  Score=46.32  Aligned_cols=69  Identities=16%  Similarity=0.252  Sum_probs=40.8

Q ss_pred             EEEeCCCcEE-EeccCcEEEEEEecCCCC---CCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCe-E
Q psy14542         13 IEMSPSGQVV-VDVGHRIELHCRVSPKRL---SSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAG-M   73 (371)
Q Consensus        13 ~~~~p~~~~~-~~~G~~v~l~C~~~~~~~---~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G-~   73 (371)
                      |.+.|+.+.. ...+..++|.|.+....|   ...+.|+++|..+...              ..+.|.|..-.- +.| .
T Consensus         2 V~l~pPs~~~~~~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W-~~g~~   80 (103)
T d1i1ca1           2 VFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDW-LNGKT   80 (103)
T ss_dssp             EEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHH-HTTCC
T ss_pred             EEEECcChHHHhccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHh-cCCCE
Confidence            3444543222 345778999996654444   3578999998876544              122333332221 244 6


Q ss_pred             EEEEEEcCC
Q psy14542         74 YQCHVSADD   82 (371)
Q Consensus        74 Y~C~~~~~~   82 (371)
                      |+|.+.+..
T Consensus        81 ~tC~V~H~~   89 (103)
T d1i1ca1          81 FKCKVNSGA   89 (103)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEEeCC
Confidence            999998754