Psyllid ID: psy14566

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530--

MLADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELHTEEMSAELMKKHMTESEWNKIYEMSRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGECNPMEKYLTYKCNSQWKSRILNLDESHRSMELALNVSEYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGLHKSEVVAWYLEQIGDQIENEEELLERKTVVEKVIERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNTSNVEQLLRKKV

ccccccEEEcccccccccccccEEcHHHccccccccccccEEEEEEcEEEccccccccHHHHHHHHcccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccccccccccEEEEcccccHHHHHHHHHHccccccccEEEEEEcccccccEEEEccccEEEEEccccEEcccccccEEEEEccccEEEccccHHHHHHcccccccccccccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHc

ccccccEEEEcccccccccccccHHHHHHcccEEEEccccEEEEEEccccccccccHHHHHHHHHHHHcccccccccccccccHHccccccHHcHEEEEEEEEccccHHHHHHHHHHHHHHHHcccccccccHHHHcHccccHHHHHHHHHHcccccHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccccccccEEHccHHEEEEccHHHHHHHHHHHHHHccccHEEEcccccccccEEEEEcccccccEEEEcccEEEEccccccEEHHHHccEEEEcccEEEEEEEcccccccccccccccHHcccccHHHHHccEEEEEEccccHHHHHHHHHHHHHHHHccccccccccccccccccHHccccccccccccccccHccccccccccccccccccccccHcHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcc

mladngvccidefdkmdphdqVAIHEAMEQQTISIAkgdmnvegvrglkslgvrdLNYRLAFLAcsvaptnprfgggelhTEEMSAELMKKHMTESEWNKIYEMSRDRNLYQNLTsslfpsihgneqikKDRNLYQNLtsslfpsihgneqikKDRNLYQNLtsslfpsihgneQIKKAKLLVDMYTQLrqrdgnssskaTWRITTRQLESLIRLSEAMAKMECldeyefdkmdphdqVAIHEAMEQQTISIAKRPELALMLAdngvccidefdnlsvtsskaGVRATLNARASILAAanpiggqydrtkslqhnvslsapimsrFDLFFVLIDECNEildygecnpmekyltYKCNSQWKSRILNLDESHRSMELALnvseydrtkslqhnvslsapimsrFDLFFVLIDECNEILDYGLHKSEVVAWYLEQIGDQIENEEELLERKTVVEKVIERLIYHGAAKLLVDMYTQLrqrdgnssskaTWRITTRQLESLIRLSEAMAKMECLDElgkccetnTSNVEQLLRKKV

MLADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELHTEEMSAELMKKHMTESEWNKIYEMSRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQLrqrdgnssskatwritTRQLESLIRLSEAMAKMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGECNPMEKYLTYKCNSQWKSRILNLDESHRSMELALNVSEYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGLHKSEVVAWYLEQIGDQIENEEELLERKTVVEKVIERLIYHGAAKLLVDMYTQLRqrdgnssskatwritTRQLESLIRLSEAMAKMECLDElgkccetntsnveqllrkkv

*****GVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNP*************************WNKIYEMSRDRNLYQNLTSSLFPSIHG***I**DRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQL***********TWRITTRQLESLIRLSEAMAKMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGECNPMEKYLTYKCNSQWKSRILNLDESHRSMELALNVSEYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGLHKSEVVAWYLEQIGDQIENEEELLERKTVVEKVIERLIYHGAAKLLVDMYTQLR*********ATWRITTRQLESLIRLSEAMAKMECLDELGKCCET*************

MLADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPR***************MKKHMTESEWNKIYEMSRDRNLYQNLTSSLFPSIHGNE*******************************LYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQ***************ITTRQLESLIRLSEAMAKMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGECNPMEKYL************************************************SRFDLFFVLIDECNEILDYGL********************EELLERKTVVEKVIERLIYHGAAKLLVDMYTQ***************ITTRQLESLIRLSEAMAKMECLDELGKCCETNTSNVEQLLRKKV

MLADNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELHTEEMSAELMKKHMTESEWNKIYEMSRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQLR*********ATWRITTRQLESLIRLSEAMAKMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGECNPMEKYLTYKCNSQWKSRILNLDESHRSMELALNVSEYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGLHKSEVVAWYLEQIGDQIENEEELLERKTVVEKVIERLIYHGAAKLLVDMYTQLR*********ATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNTSNVEQLLRKKV

***DNGVCCIDEFDKMDPHDQVAIHEAMEQQTISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELHTEEMSAELMKKHMTESEWNKIYEMSRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGECNPMEKYLTYK*******************************************************DECNEILDYGLHKSEVVAW*****GDQIENEEELLERKTVVEKVIERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNTSNVEQLLRKKV

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		532	2.2.26 [Sep-21-2011]
Q7Q0Q1		814	DNA replication licensing	yes	N/A	0.498	0.325	0.488	3e-73
Q9V461		817	DNA replication licensing	yes	N/A	0.490	0.319	0.492	1e-69
Q29JI9		815	DNA replication licensing	yes	N/A	0.490	0.320	0.485	2e-69
P97311		821	DNA replication licensing	yes	N/A	0.503	0.326	0.476	1e-68
Q14566		821	DNA replication licensing	yes	N/A	0.413	0.267	0.4	2e-60
Q2KIZ8		821	DNA replication licensing	yes	N/A	0.417	0.270	0.410	4e-60
Q498J7		823	Zygotic DNA replication l	N/A	N/A	0.454	0.294	0.408	7e-60
Q28CM3		821	Maternal DNA replication	yes	N/A	0.460	0.298	0.413	8e-60
Q5FWY4		821	Maternal DNA replication	N/A	N/A	0.460	0.298	0.413	1e-59
Q6P1V8		823	Zygotic DNA replication l	no	N/A	0.454	0.294	0.405	2e-59

>sp\|Q7Q0Q1\|MCM6_ANOGA DNA replication licensing factor Mcm6 OS=Anopheles gambiae GN=Mcm6 PE=3 SV=3	Back alignment and function desciption

 Score =  276 bits (706), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 155/317 (48%), Positives = 194/317 (61%), Gaps = 52/317 (16%)

Query: 37  KGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELHTEEMSAELMKKHMTES 96
           +GD   EGVRGLK+LG+RDLNY++AFLACSV  T+ RFGG ++   E+++++MK  MT +
Sbjct: 266 QGDNAAEGVRGLKALGMRDLNYKMAFLACSVQVTSSRFGGTDMPMSEVTSQIMKDQMTPA 325

Query: 97  EWNKIYEMSRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKDR 156
           EWNK+YEMSRD  LYQNL +SLFPSI+GN+++K+       +   LF  +    Q K   
Sbjct: 326 EWNKVYEMSRDPRLYQNLINSLFPSIYGNDEVKR------GILLMLFGGVAKTTQEKT-- 377

Query: 157 NLYQNLTSSLFPSIHGNEQIKKAKLL---VDMYTQLRQRDGNSSSKATWR-ITTRQLESL 212
                L   +   I G+    K++ L    D   +     G +SS A       R  ES 
Sbjct: 378 ----TLRGDINVCIVGDPSTAKSQFLKQVSDFSPRAVYTSGKASSAAGLTAAVVRDEESF 433

Query: 213 IRLSEAMAKME------CLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNG 266
             + EA A M       C+D  EFDKMDPHDQVAIHEAMEQQTISIA             
Sbjct: 434 DFVIEAGALMLADNGICCID--EFDKMDPHDQVAIHEAMEQQTISIA------------- 478

Query: 267 VCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRF 326
                          KAGVRATLNAR SILAAANPIGG+YDR+KSLQ N+ L+APIMSRF
Sbjct: 479 ---------------KAGVRATLNARTSILAAANPIGGRYDRSKSLQQNIQLTAPIMSRF 523

Query: 327 DLFFVLIDECNEILDYG 343
           DLFF+L+DECNE++DY 
Sbjct: 524 DLFFILVDECNEVVDYA 540

Acts as component of the Mcm2-7 complex (Mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the Mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity.
Anopheles gambiae (taxid: 7165)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2

>sp\|Q9V461\|MCM6_DROME DNA replication licensing factor Mcm6 OS=Drosophila melanogaster GN=Mcm6 PE=1 SV=1	Back alignment and function description

>sp\|Q29JI9\|MCM6_DROPS DNA replication licensing factor Mcm6 OS=Drosophila pseudoobscura pseudoobscura GN=Mcm6 PE=3 SV=1	Back alignment and function description

>sp\|P97311\|MCM6_MOUSE DNA replication licensing factor MCM6 OS=Mus musculus GN=Mcm6 PE=1 SV=1	Back alignment and function description

>sp\|Q14566\|MCM6_HUMAN DNA replication licensing factor MCM6 OS=Homo sapiens GN=MCM6 PE=1 SV=1	Back alignment and function description

>sp\|Q2KIZ8\|MCM6_BOVIN DNA replication licensing factor MCM6 OS=Bos taurus GN=MCM6 PE=2 SV=1	Back alignment and function description

>sp\|Q498J7\|MC6ZA_XENLA Zygotic DNA replication licensing factor mcm6-A OS=Xenopus laevis GN=zmcm6-a PE=1 SV=1	Back alignment and function description

>sp\|Q28CM3\|MCM6M_XENTR Maternal DNA replication licensing factor mcm6 OS=Xenopus tropicalis GN=mmcm6 PE=2 SV=1	Back alignment and function description

>sp\|Q5FWY4\|MCM6M_XENLA Maternal DNA replication licensing factor mcm6 OS=Xenopus laevis GN=mmcm6 PE=1 SV=1	Back alignment and function description

>sp\|Q6P1V8\|MCM6Z_XENTR Zygotic DNA replication licensing factor mcm6 OS=Xenopus tropicalis GN=zmcm6 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		532
148707803		864	minichromosome maintenance deficient 6 (	0.757	0.466	0.408	2e-81
170046023		816	DNA replication licensing factor Mcm6 [C	0.496	0.323	0.5	1e-73
157167859		810	DNA replication licensing factor MCM6 [A	0.496	0.325	0.503	1e-73
312379887		742	hypothetical protein AND_08154 [Anophele	0.498	0.357	0.504	1e-73
91091516		793	PREDICTED: similar to AGAP010219-PA [Tri	0.496	0.332	0.496	3e-73
449663542		815	PREDICTED: zygotic DNA replication licen	0.560	0.365	0.457	4e-72
345486680		812	PREDICTED: DNA replication licensing fac	0.490	0.321	0.522	5e-72
345486682		820	PREDICTED: DNA replication licensing fac	0.490	0.318	0.518	6e-72
119114648		814	AGAP010219-PA [Anopheles gambiae str. PE	0.498	0.325	0.488	2e-71
328703316		818	PREDICTED: DNA replication licensing fac	0.498	0.323	0.507	1e-69

>gi\|148707803\|gb\|EDL39750.1\| minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae), isoform CRA_a [Mus musculus]	Back alignment and taxonomy information

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 201/492 (40%), Positives = 277/492 (56%), Gaps = 89/492 (18%)

Query: 33  ISIAKGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELHTEEMSAELMKKH 92
           +S A G    EG+RGL++LGVRDL+YRL FLAC VAPTNPRFGG EL  EE +AE +K  
Sbjct: 270 VSGADG-YETEGIRGLRALGVRDLSYRLVFLACHVAPTNPRFGGKELRDEEQTAESIKNQ 328

Query: 93  MTESEWNKIYEMSRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQI 152
           MT  EW K++EMS+D+NLY NL +SLFP+IHGN+++K  R +   L   +  +      +
Sbjct: 329 MTVKEWEKVFEMSQDKNLYHNLCTSLFPTIHGNDEVK--RGVLLMLFGGVPKTTGEGTSL 386

Query: 153 KKDRNLYQNLTSSLFPSIHGNEQIKKAKLL--VDMYT-QLRQRDGNSSSKATWR-ITTRQ 208
           + D N+           I G+    K++ L  VD ++ +     G +SS A       R 
Sbjct: 387 RGDINV----------CIVGDPSTAKSQFLKHVDEFSPRAVYTSGKASSAAGLTAAVVRD 436

Query: 209 LESLIRLSEAMAKME------CLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALML 262
            ES   + EA A M       C+D  EFDKMD  DQVAIHEAMEQQTISI          
Sbjct: 437 EESHEFVIEAGALMLADNGVCCID--EFDKMDMRDQVAIHEAMEQQTISI---------- 484

Query: 263 ADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPI 322
                             +KAGV+ATLNAR SILAAANP+ G YDR+KSL+ N++LSAPI
Sbjct: 485 ------------------TKAGVKATLNARTSILAAANPVSGHYDRSKSLKQNINLSAPI 526

Query: 323 MSRFDLFFVLIDECNEILDYGECNPMEKYLTYKCNSQWKSRILNLDESHRSMELALNVSE 382
           MSRFDLFF+L+DECNE+ DY                    RI++L   H  +E ++    
Sbjct: 527 MSRFDLFFILVDECNEVTDYA----------------IARRIVDL---HSRIEESI---- 563

Query: 383 YDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGLHKSEV-VAWYLEQIGDQIENE 441
            DR  SL          + R+ LF        ++ DY + +  V +   +E+  D++ + 
Sbjct: 564 -DRVYSLDD--------IRRYLLFARQFKP--KVTDYAIARRIVDLHSRIEESIDRVYSL 612

Query: 442 EELLERKTVVEKVIERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLS 501
           ++ + R  +  +  +  I   +   +V+ Y +LRQRDG+  +K++WRIT RQLES+IRLS
Sbjct: 613 DD-IRRYLLFARQFKPKISKESEDFIVEQYKRLRQRDGSGVTKSSWRITVRQLESMIRLS 671

Query: 502 EAMAKMECLDEL 513
           E+MA+M C DE+
Sbjct: 672 ESMARMHCCDEV 683

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi\|170046023\|ref\|XP_001850585.1\| DNA replication licensing factor Mcm6 [Culex quinquefasciatus] gi\|167868947\|gb\|EDS32330.1\| DNA replication licensing factor Mcm6 [Culex quinquefasciatus]	Back alignment and taxonomy information

>gi\|157167859\|ref\|XP_001662645.1\| DNA replication licensing factor MCM6 [Aedes aegypti] gi\|108871049\|gb\|EAT35274.1\| AAEL012546-PA [Aedes aegypti]	Back alignment and taxonomy information

>gi\|312379887\|gb\|EFR26040.1\| hypothetical protein AND_08154 [Anopheles darlingi]	Back alignment and taxonomy information

>gi\|91091516\|ref\|XP_969603.1\| PREDICTED: similar to AGAP010219-PA [Tribolium castaneum] gi\|270000928\|gb\|EEZ97375.1\| hypothetical protein TcasGA2_TC011200 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|449663542\|ref\|XP_004205763.1\| PREDICTED: zygotic DNA replication licensing factor mcm6-A-like [Hydra magnipapillata]	Back alignment and taxonomy information

>gi\|345486680\|ref\|XP_001601698.2\| PREDICTED: DNA replication licensing factor Mcm6-like isoform 1 [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|345486682\|ref\|XP_003425529.1\| PREDICTED: DNA replication licensing factor Mcm6-like isoform 2 [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|119114648\|ref\|XP_319406.3\| AGAP010219-PA [Anopheles gambiae str. PEST] gi\|94717655\|sp\|Q7Q0Q1.3\|MCM6_ANOGA RecName: Full=DNA replication licensing factor Mcm6 gi\|116118517\|gb\|EAA13795.3\| AGAP010219-PA [Anopheles gambiae str. PEST]	Back alignment and taxonomy information

>gi\|328703316\|ref\|XP_001945957.2\| PREDICTED: DNA replication licensing factor Mcm6-like [Acyrthosiphon pisum]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		532
UNIPROTKB\|Q29JI9		815	Mcm6 "DNA replication licensin	0.379	0.247	0.463	2.8e-70
FB\|FBgn0025815		817	Mcm6 "Minichromosome maintenan	0.379	0.247	0.468	3.5e-70
UNIPROTKB\|Q28CM3		821	mmcm6 "Maternal DNA replicatio	0.417	0.270	0.427	5.2e-68
UNIPROTKB\|Q5FWY4		821	mmcm6 "Maternal DNA replicatio	0.417	0.270	0.427	6.6e-68
UNIPROTKB\|Q498J7		823	zmcm6-a "Zygotic DNA replicati	0.377	0.244	0.442	1.7e-67
ZFIN\|ZDB-GENE-030909-6		830	mcm6 "MCM6 minichromosome main	0.377	0.242	0.452	2.3e-67
UNIPROTKB\|Q5ZKR8		825	MCM6 "Uncharacterized protein"	0.372	0.24	0.454	5.8e-67
UNIPROTKB\|Q7ZY18		825	zmcm6-b "Zygotic DNA replicati	0.377	0.243	0.442	7.6e-67
UNIPROTKB\|F1NAG0		915	MCM6 "Uncharacterized protein"	0.372	0.216	0.454	1e-66
UNIPROTKB\|Q6P1V8		823	zmcm6 "Zygotic DNA replication	0.377	0.244	0.438	2e-66

UNIPROTKB\|Q29JI9 Mcm6 "DNA replication licensing factor Mcm6" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]	Back alignment and assigned GO terms

 Score = 410 (149.4 bits), Expect = 2.8e-70, Sum P(2) = 2.8e-70
 Identities = 102/220 (46%), Positives = 135/220 (61%)

Query:    42 VEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGELHTEEMSAELMKKHMTESEWNKI 101
             +EGV GLK+LG+R+LNYR+AFLACSV  T  RFGG +L   E++AE MKK MT++EW+KI
Sbjct:   270 MEGVTGLKALGMRELNYRMAFLACSVQATTARFGGTDLPMSEVTAEDMKKQMTDAEWHKI 329

Query:   102 YEMSRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQN 161
             YEMS+DRNLYQNL + LFPSI+GN+++K  R +   L   +  +      ++ D N+   
Sbjct:   330 YEMSKDRNLYQNLITCLFPSIYGNDEVK--RGILLQLFGGVAKTTIEKTSLRGDVNVC-- 385

Query:   162 LTSSLFPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKA-TWRITTRQLESLIRLSEAMA 220
             +     PS   ++ +K+     D   +     G +SS A       R  ES   + EA A
Sbjct:   386 IVGD--PSTAKSQFLKQVS---DFSPRAIYTSGKASSAAGLTAAVVRDEESFDFVIEAGA 440

Query:   221 KME------CLDEYEFDKMDPHDQVAIHEAMEQQTISIAK 254
              M       C+DE  FDKMD  DQVAIHEAMEQQTISIA+
Sbjct:   441 LMLADNGICCIDE--FDKMDLRDQVAIHEAMEQQTISIAR 478

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISS

GO:0006260 "DNA replication" evidence=ISS

FB\|FBgn0025815 Mcm6 "Minichromosome maintenance 6" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|Q28CM3 mmcm6 "Maternal DNA replication licensing factor mcm6" [Xenopus (Silurana) tropicalis (taxid:8364)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5FWY4 mmcm6 "Maternal DNA replication licensing factor mcm6" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

UNIPROTKB\|Q498J7 zmcm6-a "Zygotic DNA replication licensing factor mcm6-A" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030909-6 mcm6 "MCM6 minichromosome maintenance deficient 6, mitotin (S. cerevisiae)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZKR8 MCM6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q7ZY18 zmcm6-b "Zygotic DNA replication licensing factor mcm6-B" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NAG0 MCM6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6P1V8 zmcm6 "Zygotic DNA replication licensing factor mcm6" [Xenopus (Silurana) tropicalis (taxid:8364)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		532
pfam00493		327	pfam00493, MCM, MCM2/3/5 family	4e-43
smart00350		509	smart00350, MCM, minichromosome maintenance protei	1e-40
COG1241		682	COG1241, MCM2, Predicted ATPase involved in replic	5e-33
COG1241		682	COG1241, MCM2, Predicted ATPase involved in replic	4e-29
pfam00493		327	pfam00493, MCM, MCM2/3/5 family	1e-27
COG1241		682	COG1241, MCM2, Predicted ATPase involved in replic	5e-27
smart00350		509	smart00350, MCM, minichromosome maintenance protei	7e-27
pfam00493		327	pfam00493, MCM, MCM2/3/5 family	1e-23
PTZ00111		915	PTZ00111, PTZ00111, DNA replication licensing fact	1e-21
smart00350		509	smart00350, MCM, minichromosome maintenance protei	9e-21
pfam00493		327	pfam00493, MCM, MCM2/3/5 family	2e-11
smart00350		509	smart00350, MCM, minichromosome maintenance protei	4e-11
PTZ00111		915	PTZ00111, PTZ00111, DNA replication licensing fact	6e-11
smart00350		509	smart00350, MCM, minichromosome maintenance protei	3e-09
pfam00493		327	pfam00493, MCM, MCM2/3/5 family	3e-06
COG1241		682	COG1241, MCM2, Predicted ATPase involved in replic	8e-06
smart00350		509	smart00350, MCM, minichromosome maintenance protei	3e-05
pfam00493		327	pfam00493, MCM, MCM2/3/5 family	5e-05
pfam00493		327	pfam00493, MCM, MCM2/3/5 family	9e-04
COG1241		682	COG1241, MCM2, Predicted ATPase involved in replic	0.001

>gnl\|CDD\|215947 pfam00493, MCM, MCM2/3/5 family	Back alignment and domain information

 Score =  155 bits (395), Expect = 4e-43
 Identities = 59/119 (49%), Positives = 73/119 (61%), Gaps = 30/119 (25%)

Query: 224 CLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKA 283
           C+DE  FDKM+  D+VAIHEAMEQQTISIAK                            A
Sbjct: 126 CIDE--FDKMNEEDRVAIHEAMEQQTISIAK----------------------------A 155

Query: 284 GVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDY 342
           G+ ATLNAR S+LAAANPI G+YD  KS+  N++L  P++SRFDL FVL+D+ +E  D 
Sbjct: 156 GIVATLNARCSVLAAANPIFGRYDPKKSVAENINLPPPLLSRFDLIFVLLDKPDEERDE 214

Length = 327

>gnl\|CDD\|214631 smart00350, MCM, minichromosome maintenance proteins	Back alignment and domain information

>gnl\|CDD\|224162 COG1241, MCM2, Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|224162 COG1241, MCM2, Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|215947 pfam00493, MCM, MCM2/3/5 family	Back alignment and domain information

>gnl\|CDD\|224162 COG1241, MCM2, Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|214631 smart00350, MCM, minichromosome maintenance proteins	Back alignment and domain information

>gnl\|CDD\|215947 pfam00493, MCM, MCM2/3/5 family	Back alignment and domain information

>gnl\|CDD\|173403 PTZ00111, PTZ00111, DNA replication licensing factor MCM4; Provisional	Back alignment and domain information

>gnl\|CDD\|214631 smart00350, MCM, minichromosome maintenance proteins	Back alignment and domain information

>gnl\|CDD\|215947 pfam00493, MCM, MCM2/3/5 family	Back alignment and domain information

>gnl\|CDD\|214631 smart00350, MCM, minichromosome maintenance proteins	Back alignment and domain information

>gnl\|CDD\|173403 PTZ00111, PTZ00111, DNA replication licensing factor MCM4; Provisional	Back alignment and domain information

>gnl\|CDD\|214631 smart00350, MCM, minichromosome maintenance proteins	Back alignment and domain information

>gnl\|CDD\|215947 pfam00493, MCM, MCM2/3/5 family	Back alignment and domain information

>gnl\|CDD\|224162 COG1241, MCM2, Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|214631 smart00350, MCM, minichromosome maintenance proteins	Back alignment and domain information

>gnl\|CDD\|215947 pfam00493, MCM, MCM2/3/5 family	Back alignment and domain information

>gnl\|CDD\|215947 pfam00493, MCM, MCM2/3/5 family	Back alignment and domain information

>gnl\|CDD\|224162 COG1241, MCM2, Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		532
KOG0480\|consensus		764		100.0
KOG0479\|consensus		818		100.0
COG1241		682	MCM2 Predicted ATPase involved in replication cont	100.0
KOG0481\|consensus		729		100.0
KOG0478\|consensus		804		100.0
KOG0482\|consensus		721		100.0
KOG0477\|consensus		854		100.0
PF00493		331	MCM: MCM2/3/5 family This family extends the MCM d	100.0
PTZ00111		915	DNA replication licensing factor MCM4; Provisional	100.0
smart00350		509	MCM minichromosome maintenance proteins.	100.0
KOG0480\|consensus		764		100.0
COG1241		682	MCM2 Predicted ATPase involved in replication cont	100.0
KOG0481\|consensus		729		100.0
KOG0479\|consensus		818		100.0
KOG0482\|consensus		721		100.0
KOG0477\|consensus		854		100.0
KOG0478\|consensus		804		100.0
PF00493		331	MCM: MCM2/3/5 family This family extends the MCM d	100.0
PTZ00111		915	DNA replication licensing factor MCM4; Provisional	100.0
smart00350		509	MCM minichromosome maintenance proteins.	99.93
TIGR00368		499	Mg chelatase-related protein. The N-terminal end m	99.33
TIGR02442		633	Cob-chelat-sub cobaltochelatase subunit. A number	99.32
TIGR02031		589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	99.24
PRK09862		506	putative ATP-dependent protease; Provisional	99.18
TIGR02030		337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	99.01
CHL00081		350	chlI Mg-protoporyphyrin IX chelatase	98.75
PRK13407		334	bchI magnesium chelatase subunit I; Provisional	98.5
TIGR00368		499	Mg chelatase-related protein. The N-terminal end m	98.43
TIGR00764		608	lon_rel lon-related putative ATP-dependent proteas	98.39
PRK09862		506	putative ATP-dependent protease; Provisional	98.32
PF01078		206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	98.18
PRK13531		498	regulatory ATPase RavA; Provisional	98.18
PRK13406		584	bchD magnesium chelatase subunit D; Provisional	98.01
COG1239		423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	97.96
TIGR02442		633	Cob-chelat-sub cobaltochelatase subunit. A number	97.8
TIGR02640		262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.76
TIGR02031		589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	97.68
COG0714		329	MoxR-like ATPases [General function prediction onl	97.67
PF07726		131	AAA_3: ATPase family associated with various cellu	97.62
PF07728		139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.39
TIGR01650		327	PD_CobS cobaltochelatase, CobS subunit. This model	97.15
TIGR02030		337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	97.08
CHL00181		287	cbbX CbbX; Provisional	96.82
PF01078		206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	96.66
COG0606		490	Predicted ATPase with chaperone activity [Posttran	96.61
CHL00081		350	chlI Mg-protoporyphyrin IX chelatase	96.33
TIGR00764		608	lon_rel lon-related putative ATP-dependent proteas	96.15
PRK13765		637	ATP-dependent protease Lon; Provisional	96.12
PRK10787		784	DNA-binding ATP-dependent protease La; Provisional	96.08
TIGR02880		284	cbbX_cfxQ probable Rubsico expression protein CbbX	95.89
PRK13407		334	bchI magnesium chelatase subunit I; Provisional	95.87
PHA02244		383	ATPase-like protein	95.61
TIGR02902		531	spore_lonB ATP-dependent protease LonB. Members of	95.51
cd00009		151	AAA The AAA+ (ATPases Associated with a wide varie	95.02
PF05496		233	RuvB_N: Holliday junction DNA helicase ruvB N-term	94.95
TIGR02881		261	spore_V_K stage V sporulation protein K. Members o	94.91
PRK13406		584	bchD magnesium chelatase subunit D; Provisional	94.21
PF00004		132	AAA: ATPase family associated with various cellula	93.48
TIGR02974		329	phageshock_pspF psp operon transcriptional activat	93.29
PRK00080		328	ruvB Holliday junction DNA helicase RuvB; Reviewed	92.61
TIGR00635		305	ruvB Holliday junction DNA helicase, RuvB subunit.	92.6
PHA02244		383	ATPase-like protein	92.57
TIGR00763		775	lon ATP-dependent protease La. This protein is ind	92.05
PF07728		139	AAA_5: AAA domain (dynein-related subfamily); Inte	92.02
PRK11608		326	pspF phage shock protein operon transcriptional ac	91.72
COG1239		423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	91.34
TIGR02640		262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	91.22
COG0606		490	Predicted ATPase with chaperone activity [Posttran	90.39
smart00382		148	AAA ATPases associated with a variety of cellular	90.38
PF07726		131	AAA_3: ATPase family associated with various cellu	90.21
PRK10865		857	protein disaggregation chaperone; Provisional	89.25
TIGR01817		534	nifA Nif-specific regulatory protein. This model r	89.21
PF07724		171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	88.85
TIGR03345		852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	87.82
TIGR02639		731	ClpA ATP-dependent Clp protease ATP-binding subuni	87.6
PF12775		272	AAA_7: P-loop containing dynein motor region D3; P	87.06
PF00158		168	Sigma54_activat: Sigma-54 interaction domain; Inte	86.46
PRK05342		412	clpX ATP-dependent protease ATP-binding subunit Cl	86.39
COG0714		329	MoxR-like ATPases [General function prediction onl	86.16
TIGR02903		615	spore_lon_C ATP-dependent protease, Lon family. Me	85.47
TIGR02329		526	propionate_PrpR propionate catabolism operon regul	84.85
PRK15424		538	propionate catabolism operon regulatory protein Pr	84.28
CHL00195		489	ycf46 Ycf46; Provisional	82.51
TIGR01650		327	PD_CobS cobaltochelatase, CobS subunit. This model	82.07
CHL00095		821	clpC Clp protease ATP binding subunit	81.47
TIGR03689		512	pup_AAA proteasome ATPase. In the Actinobacteria,	81.42
COG0466		782	Lon ATP-dependent Lon protease, bacterial type [Po	81.2

>KOG0480\|consensus	Back alignment and domain information

Probab=100.00  E-value=1.2e-87  Score=708.46  Aligned_cols=387  Identities=47%  Similarity=0.697  Sum_probs=336.7

Q ss_pred             ecccCCCcccchhHHHH-------Hh---hhhcccc-ccCcccccccccccccccccccceeeeecccccCCCCCCCCCC
Q psy14566         11 DEFDKMDPHDQVAIHEA-------ME---QQTISIA-KGDMNVEGVRGLKSLGVRDLNYRLAFLACSVAPTNPRFGGGEL   79 (532)
Q Consensus        11 DEfDkm~~~dr~~ihea-------Me---qqtisia-Kagi~~~gv~~l~~~~v~tLnaRtsILA~~v~aaNp~~g~~~~   79 (532)
                      |-++++.|||++.+.++       |.   .++.+.+ ++|-...||++||++||.+|+++.++|||++.+.-        
T Consensus       233 dlVe~~~pGD~v~~TGiliVvpdv~~l~~pgsk~~n~r~~~~~~~i~~lkal~Vrdl~yq~aFlac~~~~~~--------  304 (764)
T KOG0480|consen  233 DLVETAQPGDKVDITGILIVVPDVSQLGGPGSKAENNRGGETGDGITGLKALGVRDLTYQLAFLACHVQSTL--------  304 (764)
T ss_pred             hhHhhcCCCCEEEEEEEEEEecChHHhcCCccccccccCCCcccceeeehhcccccchhhhhHhhhhccccc--------
Confidence            56899999999987553       22   2222221 23433469999999999999999999999986651        


Q ss_pred             cchhchHHHhhccCCHHHHHHHHhHhhchhhHHHHHhccCCCccCchhhhhhhhhhhhhccccCCCCCC----chhhHhH
Q psy14566         80 HTEEMSAELMKKHMTESEWNKIYEMSRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHG----NEQIKKD  155 (532)
Q Consensus        80 ~~~~l~~~~l~~~~~~srfDlI~~l~~d~~i~~~l~~S~~p~i~g~~~ik~~i~l~~~l~~~l~gg~~~----~~~lR~~  155 (532)
                      ..++-..+.++..++..+|..+++|..++++|..|+.|++|+||||+.+|+|++|      +||||+.+    +..+|++
T Consensus       305 ~~ee~~~~~~~~~~s~~e~~~~~em~~~~nly~~lv~Sl~PsIyGhe~VK~GilL------~LfGGv~K~a~eg~~lRGD  378 (764)
T KOG0480|consen  305 AVEEDDEEDMLNSMSSEEFAEIREMSKDENLYKNLVNSLFPSIYGHELVKAGILL------SLFGGVHKSAGEGTSLRGD  378 (764)
T ss_pred             ccchhhhHHHhhhccHHHHHHHHHHhcCchHHHHHHHhhCccccchHHHHhhHHH------HHhCCccccCCCCccccCC
Confidence            2233445677888999999999999999999999999999999999999999999      99999987    5689999


Q ss_pred             HHHHHhhhccccccccCCchHHHHHHHHHHHHHhccc----cCCCCCCCceeE-EEeeccccchhhhcccee------ee
Q psy14566        156 RNLYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQLRQR----DGNSSSKATWRI-TTRQLESLIRLSEAMAKM------EC  224 (532)
Q Consensus       156 I~~~~~~~~~~~pll~gdp~~~ksqlL~~~y~~Lr~r----~g~~ss~~glt~-T~RqlESliRLsEA~Akv------~~  224 (532)
                      ||          +|++||||++|||+|+. ...+.||    +|+.++++|||+ .+|+.||..+..||||+|      ||
T Consensus       379 in----------v~iVGDPgt~KSQfLk~-v~~fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICC  447 (764)
T KOG0480|consen  379 IN----------VCIVGDPGTGKSQFLKA-VCAFSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICC  447 (764)
T ss_pred             ce----------EEEeCCCCccHHHHHHH-HhccCCcceEecCcccccccceEEEEecCCCCceeeecCcEEEccCceEE
Confidence            99          99999999999999999 8999999    899999999999 889999999999999999      99


Q ss_pred             cccccccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCC
Q psy14566        225 LDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGG  304 (532)
Q Consensus       225 ~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g  304 (532)
                      +||  |||||..|+++||||||||+|||+                            |||++||||||+||||||||++|
T Consensus       448 IDE--FDKMd~~dqvAihEAMEQQtISIa----------------------------KAGv~aTLnARtSIlAAANPv~G  497 (764)
T KOG0480|consen  448 IDE--FDKMDVKDQVAIHEAMEQQTISIA----------------------------KAGVVATLNARTSILAAANPVGG  497 (764)
T ss_pred             ech--hcccChHhHHHHHHHHHhheehhe----------------------------ecceEEeecchhhhhhhcCCcCC
Confidence            999  999999999999999999999999                            99999999999999999999999


Q ss_pred             CCCCCCCccccccCCCcccccccEEEEecccCCchhhccccCccchhhhhcccccccccccccchhhhhhhhhccccccc
Q psy14566        305 QYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGECNPMEKYLTYKCNSQWKSRILNLDESHRSMELALNVSEYD  384 (532)
Q Consensus       305 ~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~ia~~~~~~~~~~~~~~~~~~i~~~~~~h~~~~~~~~~~~~~  384 (532)
                      |||+.||+.+||+|++||||||||+|+|+|++|+..|+.||                +||++.   |+.....     ..
T Consensus       498 hYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia----------------~hIld~---h~~i~~~-----~~  553 (764)
T KOG0480|consen  498 HYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIA----------------RHILDL---HRGIDDA-----TE  553 (764)
T ss_pred             ccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHH----------------HHHHHH---hcccccc-----cc
Confidence            99999999999999999999999999999999999999999                888887   7543321     00


Q ss_pred             cccccccccccccccccccccchhhhhhhHHHHhhccchhhHHHHHHhhhccchhhHHHHhhhhhhhhhccccccChhHH
Q psy14566        385 RTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGLHKSEVVAWYLEQIGDQIENEEELLERKTVVEKVIERLIYHGAA  464 (532)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~~~~~~~~~l~~i~~~i~~~~~ll~kyi~yar~~~P~ls~eA~  464 (532)
                      +                   ...++.+   .+++||                             .|||+++|+||.||.
T Consensus       554 ~-------------------~~~~~~e---~vrkYi-----------------------------~yAR~~~P~ls~ea~  582 (764)
T KOG0480|consen  554 R-------------------VCVYTLE---QVRKYI-----------------------------RYARNFKPKLSKEAS  582 (764)
T ss_pred             c-------------------cccccHH---HHHHHH-----------------------------HHHHhcCccccHHHH
Confidence            0                   0112333   555555                             999999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCchhHHHHHHhh
Q psy14566        465 KLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNTSNVEQLLRK  530 (532)
Q Consensus       465 ~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~~~~~~~~~~  530 (532)
                      +.|+++|+.||+.+.++..++++|||+||||||||||||+||++++++||++|+.++   .+++++
T Consensus       583 ~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea---~eLlk~  645 (764)
T KOG0480|consen  583 EMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEA---VELLKK  645 (764)
T ss_pred             HHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHH---HHHHHh
Confidence            999999999999997766678999999999999999999999999999998776544   444443

>KOG0479\|consensus	Back alignment and domain information

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0481\|consensus	Back alignment and domain information

>KOG0478\|consensus	Back alignment and domain information

>KOG0482\|consensus	Back alignment and domain information

>KOG0477\|consensus	Back alignment and domain information

>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite	Back alignment and domain information

>PTZ00111 DNA replication licensing factor MCM4; Provisional	Back alignment and domain information

>smart00350 MCM minichromosome maintenance proteins	Back alignment and domain information

>KOG0480\|consensus	Back alignment and domain information

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0481\|consensus	Back alignment and domain information

>KOG0479\|consensus	Back alignment and domain information

>KOG0482\|consensus	Back alignment and domain information

>KOG0477\|consensus	Back alignment and domain information

>KOG0478\|consensus	Back alignment and domain information

>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite	Back alignment and domain information

>PTZ00111 DNA replication licensing factor MCM4; Provisional	Back alignment and domain information

>smart00350 MCM minichromosome maintenance proteins	Back alignment and domain information

>TIGR00368 Mg chelatase-related protein	Back alignment and domain information

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit	Back alignment and domain information

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D	Back alignment and domain information

>PRK09862 putative ATP-dependent protease; Provisional	Back alignment and domain information

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I	Back alignment and domain information

>CHL00081 chlI Mg-protoporyphyrin IX chelatase	Back alignment and domain information

>PRK13407 bchI magnesium chelatase subunit I; Provisional	Back alignment and domain information

>TIGR00368 Mg chelatase-related protein	Back alignment and domain information

>TIGR00764 lon_rel lon-related putative ATP-dependent protease	Back alignment and domain information

>PRK09862 putative ATP-dependent protease; Provisional	Back alignment and domain information

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX	Back alignment and domain information

>PRK13531 regulatory ATPase RavA; Provisional	Back alignment and domain information

>PRK13406 bchD magnesium chelatase subunit D; Provisional	Back alignment and domain information

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]	Back alignment and domain information

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit	Back alignment and domain information

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN	Back alignment and domain information

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D	Back alignment and domain information

>COG0714 MoxR-like ATPases [General function prediction only]	Back alignment and domain information

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model	Back alignment and domain information

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []	Back alignment and domain information

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit	Back alignment and domain information

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I	Back alignment and domain information

>CHL00181 cbbX CbbX; Provisional	Back alignment and domain information

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX	Back alignment and domain information

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>CHL00081 chlI Mg-protoporyphyrin IX chelatase	Back alignment and domain information

>TIGR00764 lon_rel lon-related putative ATP-dependent protease	Back alignment and domain information

>PRK13765 ATP-dependent protease Lon; Provisional	Back alignment and domain information

>PRK10787 DNA-binding ATP-dependent protease La; Provisional	Back alignment and domain information

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX	Back alignment and domain information

>PRK13407 bchI magnesium chelatase subunit I; Provisional	Back alignment and domain information

>PHA02244 ATPase-like protein	Back alignment and domain information

>TIGR02902 spore_lonB ATP-dependent protease LonB	Back alignment and domain information

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	Back alignment and domain information

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair	Back alignment and domain information

>TIGR02881 spore_V_K stage V sporulation protein K	Back alignment and domain information

>PRK13406 bchD magnesium chelatase subunit D; Provisional	Back alignment and domain information

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport	Back alignment and domain information

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF	Back alignment and domain information

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed	Back alignment and domain information

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit	Back alignment and domain information

>PHA02244 ATPase-like protein	Back alignment and domain information

>TIGR00763 lon ATP-dependent protease La	Back alignment and domain information

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []	Back alignment and domain information

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional	Back alignment and domain information

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]	Back alignment and domain information

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN	Back alignment and domain information

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00382 AAA ATPases associated with a variety of cellular activities	Back alignment and domain information

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model	Back alignment and domain information

>PRK10865 protein disaggregation chaperone; Provisional	Back alignment and domain information

>TIGR01817 nifA Nif-specific regulatory protein	Back alignment and domain information

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []	Back alignment and domain information

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family	Back alignment and domain information

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA	Back alignment and domain information

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A	Back alignment and domain information

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor	Back alignment and domain information

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional	Back alignment and domain information

>COG0714 MoxR-like ATPases [General function prediction only]	Back alignment and domain information

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family	Back alignment and domain information

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR	Back alignment and domain information

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional	Back alignment and domain information

>CHL00195 ycf46 Ycf46; Provisional	Back alignment and domain information

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit	Back alignment and domain information

>CHL00095 clpC Clp protease ATP binding subunit	Back alignment and domain information

>TIGR03689 pup_AAA proteasome ATPase	Back alignment and domain information

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		532
3f9v_A		595	Crystal Structure Of A Near Full-Length Archaeal Mc		1e-15
3f9v_A		595	Crystal Structure Of A Near Full-Length Archaeal Mc		1e-07

>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm: Functional Insights For An Aaa+ Hexameric Helicase Length = 595

Back alignment and structure

Iteration: 1

Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 67/264 (25%), Positives = 121/264 (45%), Gaps = 69/264 (26%) Query: 93 MTESEWNKIYEMSRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLF---PSIHGN 149 ++E + KI ++++D + + SS+ PSI+G+ ++K + L +LF P + + Sbjct: 268 ISEEDEKKIKDLAKDPWIRDRIISSIAPSIYGHWELK------EALALALFGGVPKVLED 321 Query: 150 EQIKKDRNLYQNLTSSLFPSIHGNEQIKKAKLLVDMYTQLRQRDGNSSSKATWRITTRQL 209 +I+ D ++ I G+ K+++L Q + +A + TT + Sbjct: 322 TRIRGDIHIL----------IIGDPGTAKSQML--------QFISRVAPRAVY--TTGKG 361 Query: 210 ESLIRLSEAMAKMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCC 269 + L+ A+ + + EY + AL+LAD G+ Sbjct: 362 STAAGLTAAVVREKGTGEYYLEAG-------------------------ALVLADGGIAV 396 Query: 270 IDEFDNL---------------SVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQH 314 IDE D + +V+ +KAG+ A LNARA+++AA NP G+Y + + Sbjct: 397 IDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSD 456 Query: 315 NVSLSAPIMSRFDLFFVLIDECNE 338 N++L I+SRFDL F+L D+ E Sbjct: 457 NINLPPTILSRFDLIFILKDQPGE 480

PyMOL of 3f9v

>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm: Functional Insights For An Aaa+ Hexameric Helicase Length = 595

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		532
3f9v_A		595	Minichromosome maintenance protein MCM; replicativ	2e-41
3f9v_A		595	Minichromosome maintenance protein MCM; replicativ	4e-24
3f9v_A		595	Minichromosome maintenance protein MCM; replicativ	4e-23
3f9v_A		595	Minichromosome maintenance protein MCM; replicativ	2e-10
3f9v_A		595	Minichromosome maintenance protein MCM; replicativ	8e-09
3f9v_A		595	Minichromosome maintenance protein MCM; replicativ	2e-06
3f8t_A		506	Predicted ATPase involved in replication control,	3e-37
3f8t_A		506	Predicted ATPase involved in replication control,	5e-27
3f8t_A		506	Predicted ATPase involved in replication control,	2e-20
3f8t_A		506	Predicted ATPase involved in replication control,	3e-12
3f8t_A		506	Predicted ATPase involved in replication control,	4e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
2klq_A		114	CBD, P105MCM, DNA replication licensing factor MCM	3e-10

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Length = 595	Back alignment and structure

 Score =  156 bits (396), Expect = 2e-41
 Identities = 47/115 (40%), Positives = 62/115 (53%), Gaps = 30/115 (26%)

Query: 224 CLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKA 283
            +DE   DKM   D+VAIHEAMEQQT+SIAK                            A
Sbjct: 396 VIDE--IDKMRDEDRVAIHEAMEQQTVSIAK----------------------------A 425

Query: 284 GVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNE 338
           G+ A LNARA+++AA NP  G+Y   + +  N++L   I+SRFDL F+L D+  E
Sbjct: 426 GIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGE 480

PyMOL of 3f9v

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Length = 595	Back alignment and structure

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Length = 595	Back alignment and structure

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Length = 595	Back alignment and structure

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Length = 595	Back alignment and structure

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Length = 595	Back alignment and structure

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Length = 506	Back alignment and structure

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Length = 506	Back alignment and structure

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Length = 506	Back alignment and structure

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Length = 506	Back alignment and structure

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Length = 506	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2klq_A CBD, P105MCM, DNA replication licensing factor MCM6; PRE-RC, CDT1, CBD structure, ATP-BIND cycle, DNA-binding, nucleotide-binding, nucleus; HET: DNA; NMR {Homo sapiens} Length = 114	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		532
3f8t_A		506	Predicted ATPase involved in replication control,	100.0
3f9v_A		595	Minichromosome maintenance protein MCM; replicativ	100.0
3f8t_A		506	Predicted ATPase involved in replication control,	99.85
3f9v_A		595	Minichromosome maintenance protein MCM; replicativ	99.75
3nbx_X		500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	99.35
2r44_A		331	Uncharacterized protein; putative ATPase, structur	99.32
1g8p_A		350	Magnesium-chelatase 38 kDa subunit; parallel beta	99.16
3k1j_A		604	LON protease, ATP-dependent protease LON; ATP-bind	98.76
1ofh_A		310	ATP-dependent HSL protease ATP-binding subunit HSL	97.77
2bjv_A		265	PSP operon transcriptional activator; AAA, transcr	97.53
3pfi_A		338	Holliday junction ATP-dependent DNA helicase RUVB;	97.49
4fcw_A		311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.48
1ojl_A		304	Transcriptional regulatory protein ZRAR; response	97.45
3m6a_A		543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.16
1um8_A		376	ATP-dependent CLP protease ATP-binding subunit CL;	97.11
3syl_A		309	Protein CBBX; photosynthesis, rubisco activase, AA	97.06
1hqc_A		324	RUVB; extended AAA-ATPase domain, complex with nuc	96.77
3nbx_X		500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	96.49
1r6b_X		758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.39
2r44_A		331	Uncharacterized protein; putative ATPase, structur	96.34
3k1j_A		604	LON protease, ATP-dependent protease LON; ATP-bind	95.99
3h4m_A		285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.83
3b9p_A		297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.43
3vfd_A		389	Spastin; ATPase, microtubule severing, hydrolase;	95.23
1g8p_A		350	Magnesium-chelatase 38 kDa subunit; parallel beta	95.17
3pxi_A		758	Negative regulator of genetic competence CLPC/MEC;	95.0
3d8b_A		357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	94.54
2p65_A		187	Hypothetical protein PF08_0063; CLPB, malaria, str	93.84
3t15_A		293	Ribulose bisphosphate carboxylase/oxygenase activ	93.67
2qp9_X		355	Vacuolar protein sorting-associated protein 4; ATP	93.64
3pvs_A		447	Replication-associated recombination protein A; ma	93.58
2zan_A		444	Vacuolar protein sorting-associating protein 4B; S	93.53
1ny5_A		387	Transcriptional regulator (NTRC family); AAA+ ATPa	93.51
4akg_A		2695	Glutathione S-transferase class-MU 26 kDa isozyme	93.28
3eie_A		322	Vacuolar protein sorting-associated protein 4; AAA	93.26
1xwi_A		322	SKD1 protein; VPS4B, AAA ATPase, protein transport	93.21
2chg_A		226	Replication factor C small subunit; DNA-binding pr	92.94
3uk6_A		368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	92.83
1jbk_A		195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	92.29
3hws_A		363	ATP-dependent CLP protease ATP-binding subunit CL;	92.14
3pxg_A		468	Negative regulator of genetic competence CLPC/MEC;	92.11
4akg_A		2695	Glutathione S-transferase class-MU 26 kDa isozyme	92.0
1lv7_A		257	FTSH; alpha/beta domain, four helix bundle, hydrol	91.99
1ltl_A		279	DNA replication initiator (CDC21/CDC54); HET: DNA;	90.7
3bos_A		242	Putative DNA replication factor; P-loop containing	90.27
2r62_A		268	Cell division protease FTSH homolog; ATPase domain	89.85
2qz4_A		262	Paraplegin; AAA+, SPG7, protease, ADP, structural	89.3
3n70_A		145	Transport activator; sigma-54, ntpase, PSI, MCSG,	88.61
1in4_A		334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	88.36
1qvr_A		854	CLPB protein; coiled coil, AAA ATPase, chaperone;	87.74
1ojl_A		304	Transcriptional regulatory protein ZRAR; response	86.77
2bjv_A		265	PSP operon transcriptional activator; AAA, transcr	86.58
1um8_A		376	ATP-dependent CLP protease ATP-binding subunit CL;	84.79
1sxj_D		353	Activator 1 41 kDa subunit; clamp loader, processi	84.3
4b4t_L		437	26S protease subunit RPT4; hydrolase, AAA-atpases,	83.86
2c9o_A		456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	83.56
1g41_A		444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	83.25
2ce7_A		476	Cell division protein FTSH; metalloprotease; HET:	82.25
4b4t_I		437	26S protease regulatory subunit 4 homolog; hydrola	82.07
3hu3_A		489	Transitional endoplasmic reticulum ATPase; VCP, tr	82.06
3u61_B		324	DNA polymerase accessory protein 44; AAA+, ATP hyd	81.99
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	81.4
3co5_A		143	Putative two-component system transcriptional RES	80.37
4b4t_H		467	26S protease regulatory subunit 7 homolog; hydrola	80.12
3cf2_A		806	TER ATPase, transitional endoplasmic reticulum ATP	80.01

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}	Back alignment and structure

Probab=100.00  E-value=3.1e-46  Score=395.17  Aligned_cols=282  Identities=21%  Similarity=0.234  Sum_probs=226.3

Q ss_pred             CCHHHHHHHHhHhhchhhHHHHHhccCCCccCchhhhhhhhhhhhhccccCCCCCCchhhHhHHHHHHhhhccccccccC
Q psy14566         93 MTESEWNKIYEMSRDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHGNEQIKKDRNLYQNLTSSLFPSIHG  172 (532)
Q Consensus        93 ~~~srfDlI~~l~~d~~i~~~l~~S~~p~i~g~~~ik~~i~l~~~l~~~l~gg~~~~~~lR~~I~~~~~~~~~~~pll~g  172 (532)
                      ++..+.+.|..+.++ ++++.+++|++| |+|++.+|+++.+      .++||..+   .|+++|          .||+|
T Consensus       188 ~t~ed~~~i~~l~~~-~~~~~l~~sIap-I~G~e~vK~aLll------~L~GG~~k---~rgdih----------VLL~G  246 (506)
T 3f8t_A          188 PDPAELEEFRELADK-DPLTTFARAIAP-LPGAEEVGKMLAL------QLFSCVGK---NSERLH----------VLLAG  246 (506)
T ss_dssp             CCHHHHHHHHHHHHS-CHHHHHHHHHCC-STTCHHHHHHHHH------HHTTCCSS---GGGCCC----------EEEES
T ss_pred             CCHHHHHHHHHHHHH-HHHHHHHHHhcc-cCCCHHHHHHHHH------HHcCCccc---cCCcee----------EEEEC
Confidence            445566677778888 999999999999 9999999999999      99999765   677777          99999


Q ss_pred             CchHHHHHHHHHHH-HHhccc----cCCCCCCCceeEEEeeccccchhhhcccee------eecccccccCCChHHHHHH
Q psy14566        173 NEQIKKAKLLVDMY-TQLRQR----DGNSSSKATWRITTRQLESLIRLSEAMAKM------ECLDEYEFDKMDPHDQVAI  241 (532)
Q Consensus       173 dp~~~ksqlL~~~y-~~Lr~r----~g~~ss~~glt~T~RqlESliRLsEA~Akv------~~~de~~vd~~d~~~~~~l  241 (532)
                      +||+ |+++++. . .++.||    +|.+++..++++++|.. ++ |..++|+.+      +|.||  +++++...+.+|
T Consensus       247 ~PGt-KS~Lar~-i~~~i~pR~~ft~g~~ss~~gLt~s~r~~-tG-~~~~~G~l~LAdgGvl~lDE--In~~~~~~qsaL  320 (506)
T 3f8t_A          247 YPVV-CSEILHH-VLDHLAPRGVYVDLRRTELTDLTAVLKED-RG-WALRAGAAVLADGGILAVDH--LEGAPEPHRWAL  320 (506)
T ss_dssp             CHHH-HHHHHHH-HHHHTCSSEEEEEGGGCCHHHHSEEEEES-SS-EEEEECHHHHTTTSEEEEEC--CTTCCHHHHHHH
T ss_pred             CCCh-HHHHHHH-HHHHhCCCeEEecCCCCCccCceEEEEcC-CC-cccCCCeeEEcCCCeeehHh--hhhCCHHHHHHH
Confidence            9999 9999999 6 788777    45555556788877776 66 888887765      99999  999999999999


Q ss_pred             HHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccceeecccCCCCCCCCCCCCccccccCCCc
Q psy14566        242 HEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARASILAAANPIGGQYDRTKSLQHNVSLSAP  321 (532)
Q Consensus       242 ~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~svlAaanp~~g~~~~~~~~~~ni~l~~~  321 (532)
                      +|+||+|+++|.                              |+  +||+||+||||+||.+ +|++++++ +|++||++
T Consensus       321 lEaMEe~~VtI~------------------------------G~--~lparf~VIAA~NP~~-~yd~~~s~-~~~~Lp~a  366 (506)
T 3f8t_A          321 MEAMDKGTVTVD------------------------------GI--ALNARCAVLAAINPGE-QWPSDPPI-ARIDLDQD  366 (506)
T ss_dssp             HHHHHHSEEEET------------------------------TE--EEECCCEEEEEECCCC---CCSCGG-GGCCSCHH
T ss_pred             HHHHhCCcEEEC------------------------------CE--EcCCCeEEEEEeCccc-ccCCCCCc-cccCCChH
Confidence            999999999974                              77  9999999999999998 99999999 99999999


Q ss_pred             ccccccEEEEecccCCchhhccccCccchhhhhcccccccccccccchhhhhhhhhcccccccccccccccccccccccc
Q psy14566        322 IMSRFDLFFVLIDECNEILDYGECNPMEKYLTYKCNSQWKSRILNLDESHRSMELALNVSEYDRTKSLQHNVSLSAPIMS  401 (532)
Q Consensus       322 LLSRFDLif~l~D~~d~~~D~~ia~~~~~~~~~~~~~~~~~~i~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (532)
                      |||||||+|++.|.++++.|..-.                ..+                                     
T Consensus       367 lLDRFDLi~i~~d~pd~e~d~e~~----------------~~~-------------------------------------  393 (506)
T 3f8t_A          367 FLSHFDLIAFLGVDPRPGEPEEQD----------------TEV-------------------------------------  393 (506)
T ss_dssp             HHTTCSEEEETTC-------------------------------------------------------------------
T ss_pred             HhhheeeEEEecCCCChhHhhccc----------------CCC-------------------------------------
Confidence            999999999999999987762100                000                                     


Q ss_pred             ccccchhhhhhhHHHHhhccchhhHHHHHHhhhccchhhHHHHhhhhhhhhh--ccccccChhHHHHHHHHHHHHhhccC
Q psy14566        402 RFDLFFVLIDECNEILDYGLHKSEVVAWYLEQIGDQIENEEELLERKTVVEK--VIERLIYHGAAKLLVDMYTQLRQRDG  479 (532)
Q Consensus       402 ~~~~~~~~~~~~~~l~~yi~~~~~~~~~~l~~i~~~i~~~~~ll~kyi~yar--~~~P~ls~eA~~~I~~~Y~~lR~~~~  479 (532)
                            ++.+   .+++|+                             .|||  .++|.+++++.++|.++|..+|+...
T Consensus       394 ------ls~e---~L~~yi-----------------------------~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~  435 (506)
T 3f8t_A          394 ------PSYT---LLRRYL-----------------------------LYAIREHPAPELTEEARKRLEHWYETRREEVE  435 (506)
T ss_dssp             ------CCHH---HHHHHH-----------------------------HHHHHHCSCCEECHHHHHHHHHHHHHHHHHHH
T ss_pred             ------CCHH---HHHHHH-----------------------------HHHHhcCCCceeCHHHHHHHHHHHHHHhcCcc
Confidence                  1112   455555                             9998  58999999999999999999998421


Q ss_pred             C--CCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCchhHHHH
Q psy14566        480 N--SSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETNTSNVEQ  526 (532)
Q Consensus       480 ~--~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~~~~~~~  526 (532)
                      .  ......+++|+|+||+|||+|+|||||++|+.|+++|+..+..+.+
T Consensus       436 ~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~  484 (506)
T 3f8t_A          436 ERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVD  484 (506)
T ss_dssp             HHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred             cccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHH
Confidence            0  0112357899999999999999999999999999888777766654

PyMOL of 3f8t

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}	Back alignment and structure

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}	Back alignment and structure

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}	Back alignment and structure

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}	Back alignment and structure

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}	Back alignment and structure

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G	Back alignment and structure

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}	Back alignment and structure

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*	Back alignment and structure

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*	Back alignment and structure

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}	Back alignment and structure

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*	Back alignment and structure

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}	Back alignment and structure

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A	Back alignment and structure

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20	Back alignment and structure

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*	Back alignment and structure

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*	Back alignment and structure

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}	Back alignment and structure

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*	Back alignment and structure

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}	Back alignment and structure

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}	Back alignment and structure

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}	Back alignment and structure

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}	Back alignment and structure

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}	Back alignment and structure

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G	Back alignment and structure

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}	Back alignment and structure

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}	Back alignment and structure

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}	Back alignment and structure

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A	Back alignment and structure

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*	Back alignment and structure

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}	Back alignment and structure

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A	Back alignment and structure

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*	Back alignment and structure

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A	Back alignment and structure

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C	Back alignment and structure

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}	Back alignment and structure

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}	Back alignment and structure

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*	Back alignment and structure

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20	Back alignment and structure

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A	Back alignment and structure

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}	Back alignment and structure

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A	Back alignment and structure

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20	Back alignment and structure

>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11	Back alignment and structure

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A	Back alignment and structure

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*	Back alignment and structure

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}	Back alignment and structure

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}	Back alignment and structure

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*	Back alignment and structure

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20	Back alignment and structure

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}	Back alignment and structure

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*	Back alignment and structure

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20	Back alignment and structure

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20	Back alignment and structure

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*	Back alignment and structure

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*	Back alignment and structure

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*	Back alignment and structure

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*	Back alignment and structure

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}	Back alignment and structure

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		532
d1g8pa_		333	ATPase subunit of magnesium chelatase, BchI {Rhodo	99.69
d1g8pa_		333	ATPase subunit of magnesium chelatase, BchI {Rhodo	98.71
d1in4a2		238	Holliday junction helicase RuvB {Thermotoga mariti	92.6
d1ixsb2		239	Holliday junction helicase RuvB {Thermus thermophi	92.22
d1w44a_		321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	91.35
d1r6bx2		268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	90.51
d1ixza_		247	AAA domain of cell division protein FtsH {Thermus	89.79
d1ny5a2		247	Transcriptional activator sigm54 (NtrC1), C-termin	88.14
d1sxje2		252	Replication factor C5 {Baker's yeast (Saccharomyce	84.9
d1njfa_		239	delta prime subunit of DNA polymerase III, N-domai	83.88
d1a5ta2		207	delta prime subunit of DNA polymerase III, N-domai	82.52
d1r6bx3		315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	82.5
d1iqpa2		231	Replication factor C {Archaeon Pyrococcus furiosus	81.58
d1lv7a_		256	AAA domain of cell division protein FtsH {Escheric	80.24

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.69  E-value=1.3e-16  Score=161.56  Aligned_cols=177  Identities=15%  Similarity=0.134  Sum_probs=121.2

Q ss_pred             hhhccceeeecccccccCCChHHHHHHHHHHHhcccccccCcchhhhhcCCCceecccccccccccccccceeeecccce
Q psy14566        215 LSEAMAKMECLDEYEFDKMDPHDQVAIHEAMEQQTISIAKRPELALMLADNGVCCIDEFDNLSVTSSKAGVRATLNARAS  294 (532)
Q Consensus       215 LsEA~Akv~~~de~~vd~~d~~~~~~l~eaMeqq~isi~~~~~~~~~~~~~~~~~~~e~~~~~~~~~kagi~~~l~ar~s  294 (532)
                      ++.|+.-+.|.||  +.+++...+.+|+++||+++++|+                            ++|+..++++++.
T Consensus       123 l~~A~~gvl~iDE--i~~~~~~~~~aLl~~me~~~v~i~----------------------------r~g~~~~~p~~f~  172 (333)
T d1g8pa_         123 LARANRGYLYIDE--CNLLEDHIVDLLLDVAQSGENVVE----------------------------RDGLSIRHPARFV  172 (333)
T ss_dssp             HHHHTTEEEEETT--GGGSCHHHHHHHHHHHHHSEEEEC----------------------------CTTCCEEEECCEE
T ss_pred             cccccccEeeccc--HHHHHHHHHHHHhhhhcCCeEEec----------------------------ccCceecCCCCEE
Confidence            4556667899999  999999999999999999999999                            9999999999999


Q ss_pred             eecccCCCCCCCCCCCCccccccCCCcccccccEEEEecccCCchhhccccCccchhhhhcccccccccccccchhhhhh
Q psy14566        295 ILAAANPIGGQYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGECNPMEKYLTYKCNSQWKSRILNLDESHRSM  374 (532)
Q Consensus       295 vlAaanp~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~ia~~~~~~~~~~~~~~~~~~i~~~~~~h~~~  374 (532)
                      ++||+||..+            .+++++++|||+-+.+.+..+.+....+.                .+...    +...
T Consensus       173 liaa~Np~~~------------~l~~~llDRf~~~i~v~~~~~~~~~~~~~----------------~~~~~----~~~~  220 (333)
T d1g8pa_         173 LVGSGNPEEG------------DLRPQLLDRFGLSVEVLSPRDVETRVEVI----------------RRRDT----YDAD  220 (333)
T ss_dssp             EEEEECSCSC------------CCCHHHHTTCSEEEECCCCCSHHHHHHHH----------------HHHHH----HHHC
T ss_pred             EEEecCcccc------------ccccchhhhhcceeeccCcchhhHHHHHH----------------Hhhhh----cccC
Confidence            9999999865            48899999999888776655443332222                00000    0000


Q ss_pred             hhhccccccccccccccccccccccccccccchhhhhhhHHHHhhccchhhHHHHHHhhhccchhhHHHHhhhhhhh-hh
Q psy14566        375 ELALNVSEYDRTKSLQHNVSLSAPIMSRFDLFFVLIDECNEILDYGLHKSEVVAWYLEQIGDQIENEEELLERKTVV-EK  453 (532)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~~~~~~~~~l~~i~~~i~~~~~ll~kyi~y-ar  453 (532)
                      ..        .                             ....+...                  ...+..+.... .+
T Consensus       221 ~~--------~-----------------------------~~~~~~~~------------------~~~~~~~~~~~~~~  245 (333)
T d1g8pa_         221 PK--------A-----------------------------FLEEWRPK------------------DMDIRNQILEARER  245 (333)
T ss_dssp             HH--------H-----------------------------HHHHHHHH------------------HHHHHHHHHHHHHH
T ss_pred             hH--------H-----------------------------HHHHHHHH------------------HHHHHHHHHHHhhc
Confidence            00        0                             00000000                  00000011111 12


Q ss_pred             ccccccChhHHHHHHHHHHHHhhccCCCCCCCccccchhhHHHHHHHHHhhhhccCcccccccccCc
Q psy14566        454 VIERLIYHGAAKLLVDMYTQLRQRDGNSSSKATWRITTRQLESLIRLSEAMAKMECLDELGKCCETN  520 (532)
Q Consensus       454 ~~~P~ls~eA~~~I~~~Y~~lR~~~~~~~~~~~~~iT~RqLESLIRLSeA~AKl~l~~~Vt~~d~~~  520 (532)
                      .....++.++...+...+..++.            .++|....|+|+|+|+|.|+.++.|+++|+..
T Consensus       246 l~~v~~~~~~~~~~~~~~~~~~~------------~S~R~~~~llrvArtiA~L~gr~~V~~~di~~  300 (333)
T d1g8pa_         246 LPKVEAPNTALYDCAALCIALGS------------DGLRGELTLLRSARALAALEGATAVGRDHLKR  300 (333)
T ss_dssp             GGGCBCCHHHHHHHHHHHHHSSS------------CSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHH
T ss_pred             ccceecCHHHHHHHHHHHHHcCC------------CChHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence            24567788888888888776532            36899999999999999999999999766543

PyMOL of d1g8pa_

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}	Back information, alignment and structure

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	Back information, alignment and structure

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}	Back information, alignment and structure