Psyllid ID: psy14584

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560---
MQESSYYSRLLSTTEEGPQDFLCLDEYRPLQDNVLSHSVYYDLQPVQRSTCSTSTYVEDGQIPSSSVHPMEYQQADSTRKSKKRKGGSSFHGSDFEEDTGEDSGKSLKLDDSKKSTCSTSTYVEDGQIPSSSVHPMEYQQADSTRKSKKRKGGSSFQHGCAISDLSAQGELLGQSWFDILHPKDVAKVKEQLFSSDLSPRERLIDVKSKQVIVGLPVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAVHSYTEGHYKPAFLTDQELKHLILQAAEGFLQNHSEIEKRRRDKMNTYITELSAMVPTLLPVKTADIPAEVSRLCPGARRSFFCRMKCKHTPASSSSSSSSNSAPSTQPGPNTPSPGTGSCVKEEPDTTTGAAASCHRKKKQQQSDRKYSVIQCTGYLKSWAPAKMGLEESEDRKYSVIQCTGYLKSWAPAKMGLEESEGEGEGGETCTLSCLVAVGRVLADKTRILNKQVNLRPIQFLSRHALDGKFLFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKNTLIL
cccccHHHHHcccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccEEEcccccHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHcccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccEEEEEEEEcccccccccccccccccEEEEEEccccEEEEEEEEEEccccEEEEEEEEEEEEccccccccEEEEEcEEcc
ccccHHHHHHHHHHcccccHHEcHHHHcccccccccccEEEcccccccccccEEEEEEcccccccccccccEcccccccccccccccccccccccccccccccccccEEcccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccHHHHHHHHHccccccccccHHcccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccEEEEEcccccEEEEEEcccccccHHHHccccccccccccccccccccccccEEEEEEcccccccccccHHHHHHHccccccccccccccccccEEcccccccccccEEEEEEEccccccEEEEEccccccccccccccccccccccccEEEEEEEccccccEEEEcccccccccccccccHHHHHHHHHHcHHcccccccccccccEEEEEEEccccEEEEEEEEEEcccEEEEEEEEEEEEEcccccccEEEEEEcEEEc
MQESSYYSRllstteegpqdflcldeyrplqdnvlshsvyydlqpvqrstcststyvedgqipsssvhpmeyqqadstrkskkrkggssfhgsdfeedtgedsgkslklddskkstcststyvedgqipsssvhpmeyqqadstrkskkrkggssfqhgcaisdlsaqgellgqswfdilhpkDVAKVKEQLfssdlsprerlidvkskqvivglpvsrqnhSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAvhsyteghykpafltdQELKHLILQAAEGFLQNHSEIEKRRRDKMNTYITELSAmvptllpvktadipaevsrlcpgarrsffcrmkckhtpassssssssnsapstqpgpntpspgtgscvkeepdtttgaaaschrkkkqqqsdrkySVIQCTGylkswapakmgleesedrkYSVIQCTGylkswapakmgleesegegeggetctLSCLVAVGRVLADKTRILNKQVNLRPIQFLSRHALDGKFLFVYQFKNKGGTYVQLQSEWknfrnpwtkDIEYLISKNTLIL
MQESSYYSRLLSTTEEGPQDFLCLDEYRPLQDNVLSHSVYYDLQPVQRSTCSTSTYVEdgqipsssvhpmeyqqadstrkskkrkggssfhgsdfeedtgedsgkslklddskkstcststyvedgqipsssvhpmeyQQADSTRKSKKRKGGSSFQHGCAISDLSAQGELLGQSWFDILHPKDVAKVKEQLfssdlsprerlidvkskqvivglpvsrqnhseiekrrrDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAVHSYTEGHYKPAFLTDQELKHLILQAAEGFLQNHSEIEKRRRDKMNTYITELSAMVPTLLPVKTADIPAEVSRLCPGARRSFFCRMKCKHtpassssssssnsapstqpgpntpspgtGSCVKEEPDTTTgaaaschrkkkqqqsdrkysvIQCTGYLKSWAPAKMGLEESEDRKYSVIQCTGYLKSWAPAKMGLEESEGEGEGGETCTLSCLVAVGRVLADKtrilnkqvnlrpIQFLSRHALDGKFLFVYQFKNKGGTYVQLQSewknfrnpwtkdieyliskntlil
MQESSYYSRLLSTTEEGPQDFLCLDEYRPLQDNVLSHSVYYDLQPVQRSTCSTSTYVEDGQIPSSSVHPMEYQQADstrkskkrkggssFHGSDFEEDTGEdsgkslklddskkstcststYVEDGQIPSSSVHPMEYQQADstrkskkrkggssFQHGCAISDLSAQGELLGQSWFDILHPKDVAKVKEQLFSSDLSPRERLIDVKSKQVIVGLPVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAVHSYTEGHYKPAFLTDQELKHLILQAAEGFLQNHSEIEKRRRDKMNTYITELSAMVPTLLPVKTADIPAEVSRLCPGARRSFFCRMKCKHTpassssssssnsapstqpgpntpspgtgsCVKEEPDTTTGAAASCHRKKKQQQSDRKYSVIQCTGYLKSWAPAKMGLEESEDRKYSVIQCTGYLKSWAPAKMgleesegegeggetctlscLVAVGRVLADKTRILNKQVNLRPIQFLSRHALDGKFLFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKNTLIL
*******************DFLCLDEYRPLQDNVLSHSVYYDLQPVQRSTC***********************************************************************************************************GCAISDLSAQGELLGQSWFDILHPKDVAKVKEQLF*********LIDVKSKQVIVGLP*****************NTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAVHSYTEGHYKPAFLTDQELKHLILQAAEGFLQNHS********KMNTYITELSAMVPTLLPVKTADIPAEVSRLCPGARRSFFCRMKC************************************************************YSVIQCTGYLKSWAPAKMGLE**EDRKYSVIQCTGYLKSWAPAK*************ETCTLSCLVAVGRVLADKTRILNKQVNLRPIQFLSRHALDGKFLFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKNT***
*****YY***LSTTEEGPQDFLCLDEYRPLQDNVLSHSVYYDLQ*****************************************************************************YVEDGQIPSSSVHPM*************RKGGSSFQHGCAISDLSAQGELLGQSWFDILHPKD*************S********************************DKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAVH*********AFLTDQELKHLILQAAEGFLQNHSEIEKRRRDKMNTYITELSAMVPTLLPVKTADIPAEV**********FFCRMKC*************************************************************SVIQCTGYL****************KYSVIQCTGYLKSWA******************CTLSCLVAVGRVLADKTRILN*QVNLRPIQFLSRHALDGKFLFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKNTLIL
*************TEEGPQDFLCLDEYRPLQDNVLSHSVYYDLQPVQRSTCSTSTYVEDGQIPSSS*********************************************************EDGQIPSSS************************QHGCAISDLSAQGELLGQSWFDILHPKDVAKVKEQLFSSDLSPRERLIDVKSKQVIVGLPVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAVHSYTEGHYKPAFLTDQELKHLILQAAEGFLQNHSEIEKRRRDKMNTYITELSAMVPTLLPVKTADIPAEVSRLCPGARRSFFCRMKC*************************************************************SVIQCTGYLKSWAPAKMGLEESEDRKYSVIQCTGYLKSWAPAKMG************TCTLSCLVAVGRVLADKTRILNKQVNLRPIQFLSRHALDGKFLFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKNTLIL
****SYYSRLLSTTEEGPQDFLCLDEYRPLQDNVLSHSVYYDLQPVQRSTCSTSTYVEDGQIP******************************************SLKLDDSKKSTCSTSTYVEDGQIPSSSVHPME***A*******************************GQSWFDILHPKDVAKVKEQ**********************************EKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAVHSYTEGHYKPAFLTDQELKHLILQAAEGFLQNHSEIEKRRRDKMNTYITELSAMVPTLLPVKTADIPAEVSRLCPGARRSFFCRMKCKHTPASSSSSSSSNSAPSTQPGPNTPSPGTGSCVKEEPDTTTGAAASCHRKKKQQQSDRKYSVIQCTGYLKSWAPAKMGLEESEDRKYSVIQCTGYLKSWAPAKMGLEESEGEGEGGETCTLSCLVAVGRVLADKTRILNKQVNLRPIQFLSRHALDGKFLFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKNTLIL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MQESSYYSRLLSTTEEGPQDFLCLDEYRPLQDNVLSHSVYYDLQPVQRSTCSTSTYVEDGQIPSSSVHPMEYQQADSTRKSKKRKGGSSFHGSDFEEDTGEDSGKSLKLDDSKKSTCSTSTYVEDGQIPSSSVHPMEYQQADSTRKSKKRKGGSSFQHGCAISDLSAQGELLGQSWFDILHPKDVAKVKEQLFSSDLSPRERLIDVKSKQVIVGLPVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAVHSYTEGHYKPAFLTDQELKHLILQAAEGFLQNHSEIEKRRRDKMNTYITELSAMVPTLLPVKTADIPAEVSRLCPGARRSFFCRMKCKHTPASSSSSSSSNSAPSTQPGPNTPSPGTGSCVKEEPDTTTGAAASCHRKKKQQQSDRKYSVIQCTGYLKSWAPAKMGLEESEDRKYSVIQCTGYLKSWAPAKMGLEESEGEGEGGETCTLSCLVAVGRVLADKTRILNKQVNLRPIQFLSRHALDGKFLFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKNTLIL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query563 2.2.26 [Sep-21-2011]
Q9I8T7 633 Aryl hydrocarbon receptor yes N/A 0.497 0.442 0.368 5e-65
Q6YGZ5 633 Aryl hydrocarbon receptor N/A N/A 0.497 0.442 0.368 7e-65
O88529 626 Aryl hydrocarbon receptor N/A N/A 0.499 0.448 0.367 1e-64
O00327 626 Aryl hydrocarbon receptor yes N/A 0.499 0.448 0.365 4e-64
A0MLS5 626 Aryl hydrocarbon receptor yes N/A 0.499 0.448 0.365 4e-64
Q9WTL8 632 Aryl hydrocarbon receptor yes N/A 0.495 0.441 0.371 4e-64
Q9EPW1 626 Aryl hydrocarbon receptor yes N/A 0.499 0.448 0.367 4e-64
Q5R4T2 625 Aryl hydrocarbon receptor yes N/A 0.495 0.446 0.369 7e-64
Q91YA9 626 Aryl hydrocarbon receptor N/A N/A 0.499 0.448 0.363 8e-63
O61734413 Protein cycle OS=Drosophi yes N/A 0.509 0.694 0.359 6e-62
>sp|Q9I8T7|BMAL1_CHICK Aryl hydrocarbon receptor nuclear translocator-like protein 1 OS=Gallus gallus GN=ARNTL PE=1 SV=1 Back     alignment and function desciption
 Score =  249 bits (635), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 160/434 (36%), Positives = 216/434 (49%), Gaps = 154/434 (35%)

Query: 218 SRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAVHSY 277
           +R+ HS+IEKRRRDKMN++I EL+++VP C+AMSRKLDKLTVLRMAVQH+KT+RGA + Y
Sbjct: 80  AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATNPY 139

Query: 278 TEGHYKPAFLTDQELKHLILQAAEGFL--------------------QNHSEIE------ 311
           TE +YKPAFL+D ELKHLIL+AA+GFL                     N+S+ +      
Sbjct: 140 TEANYKPAFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSL 199

Query: 312 ------------KRRRDKMNTYITELSAMVPTLLPVKTADIPAEVSRLCPGARRSFFCRM 359
                       K +    +T   E      T LPVKT DI    SRLC GARRSFFCRM
Sbjct: 200 FDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKT-DITPGPSRLCSGARRSFFCRM 258

Query: 360 KCKHTPASSSSSSSSNSAPSTQPGPNTPSPGTGSCVKEEPDTTTGAAASCHRKKKQQQSD 419
           KC                       N PS      VK E        ++C +KK  ++S 
Sbjct: 259 KC-----------------------NRPS------VKVE---DKDFPSTCSKKKADRKS- 285

Query: 420 RKYSVIQCTGYLKSWAPAKMGLEESEDRKYSVIQCTGYLKSWAPAKMGLEESEGEGEGGE 479
             +  I  TGYLKSW P KMGL+                          E++E + EG  
Sbjct: 286 --FCTIHSTGYLKSWPPTKMGLD--------------------------EDNEPDNEG-- 315

Query: 480 TCTLSCLVAVGRVLADKT-RILNKQVNLRPIQFLSRHALDGKFLFV-------------- 524
            C LSCLVA+GR+      + +N ++ ++P +++SRHA+DGKF+FV              
Sbjct: 316 -CNLSCLVAIGRLHPHVVPQPVNGEIRVKPTEYVSRHAIDGKFVFVDQRATAILAYLPQE 374

Query: 525 ------------------------------------YQFKNKGGTYVQLQSEWKNFRNPW 548
                                               Y+FK K G+++ L+S W +F NPW
Sbjct: 375 LLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITLRSRWFSFMNPW 434

Query: 549 TKDIEYLISKNTLI 562
           TK++EY++S NT++
Sbjct: 435 TKEVEYIVSTNTVV 448
ARNTL-CLOCK heterodimers activate E-box element (3'-CACGTG-5') transcription of a number of proteins of the circadian clock. This transcription is inhibited in a feedback loop by PER, and also by CRY proteins.
Gallus gallus (taxid: 9031)
>sp|Q6YGZ5|BMAL1_TYTAL Aryl hydrocarbon receptor nuclear translocator-like protein 1 OS=Tyto alba GN=ARNTL PE=2 SV=1 Back     alignment and function description
>sp|O88529|BMAL1_MESAU Aryl hydrocarbon receptor nuclear translocator-like protein 1 OS=Mesocricetus auratus GN=ARNTL PE=2 SV=1 Back     alignment and function description
>sp|O00327|BMAL1_HUMAN Aryl hydrocarbon receptor nuclear translocator-like protein 1 OS=Homo sapiens GN=ARNTL PE=1 SV=2 Back     alignment and function description
>sp|A0MLS5|BMAL1_HORSE Aryl hydrocarbon receptor nuclear translocator-like protein 1 OS=Equus caballus GN=ARNTL PE=2 SV=1 Back     alignment and function description
>sp|Q9WTL8|BMAL1_MOUSE Aryl hydrocarbon receptor nuclear translocator-like protein 1 OS=Mus musculus GN=Arntl PE=1 SV=2 Back     alignment and function description
>sp|Q9EPW1|BMAL1_RAT Aryl hydrocarbon receptor nuclear translocator-like protein 1 OS=Rattus norvegicus GN=Arntl PE=2 SV=4 Back     alignment and function description
>sp|Q5R4T2|BMAL1_PONAB Aryl hydrocarbon receptor nuclear translocator-like protein 1 OS=Pongo abelii GN=ARNTL PE=2 SV=1 Back     alignment and function description
>sp|Q91YA9|BMAL1_NANGA Aryl hydrocarbon receptor nuclear translocator-like protein 1 OS=Nannospalax galili GN=Arntl PE=1 SV=1 Back     alignment and function description
>sp|O61734|CYCL_DROME Protein cycle OS=Drosophila melanogaster GN=cyc PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query563
166998249 675 CYCLE [Tribolium castaneum] gi|140270864 0.504 0.420 0.467 2e-95
305682540644 CYCLE [Thermobia domestica] 0.504 0.440 0.453 6e-94
371534934 744 cycle protein [Aedes aegypti] 0.509 0.385 0.460 3e-93
307186380 890 Aryl hydrocarbon receptor nuclear transl 0.515 0.325 0.480 4e-93
157126327657 circadian protein clock/arnt/bmal/pas [A 0.509 0.436 0.460 2e-92
157126329647 circadian protein clock/arnt/bmal/pas [A 0.509 0.443 0.460 2e-92
307212674 877 Aryl hydrocarbon receptor nuclear transl 0.515 0.330 0.480 2e-92
383860213 899 PREDICTED: aryl hydrocarbon receptor nuc 0.511 0.320 0.473 1e-91
158294552642 AGAP005655-PA [Anopheles gambiae str. PE 0.511 0.448 0.457 2e-91
350406507 737 PREDICTED: aryl hydrocarbon receptor nuc 0.511 0.390 0.473 3e-91
>gi|166998249|ref|NP_001107795.1| CYCLE [Tribolium castaneum] gi|140270864|gb|ABO86538.1| CYCLE [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 204/436 (46%), Positives = 246/436 (56%), Gaps = 152/436 (34%)

Query: 219 RQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAVHSYT 278
           +QNHSEIEKRRRDKMNTYITELSAM+PMCHAMSRKLDKLTVLRMAVQHLKTIRGAVHSYT
Sbjct: 118 KQNHSEIEKRRRDKMNTYITELSAMIPMCHAMSRKLDKLTVLRMAVQHLKTIRGAVHSYT 177

Query: 279 EGHYKPAFLTDQELKHLILQAAEGFL--------------------QNHS---------- 308
           EGHYKP+FL+DQELKHLILQAA+GFL                     N S          
Sbjct: 178 EGHYKPSFLSDQELKHLILQAADGFLFVVGCDRGRILYVSESVSKVLNFSQGDLLGQSLF 237

Query: 309 ------EIEKRRRDKMNTYITELSAMVP--TLLPVKTADIPAEVSRLCPGARRSFFCRMK 360
                 ++ K +    ++ +     ++   T+LPVK AD+P   SRLCPGARRSFFCRMK
Sbjct: 238 DILHPKDVAKAKEQLSSSDLNPRERLIDAKTMLPVK-ADVPQNGSRLCPGARRSFFCRMK 296

Query: 361 CKHTPASSSSSSSSNSAPSTQPGPNTPSPGTGSCVKEEPDTTTGAAASCHRKKKQQQSDR 420
           CK                              S VKEE DTTTG    CH++KKQQ SD+
Sbjct: 297 CK----------------------------VSSQVKEEADTTTG----CHKRKKQQNSDK 324

Query: 421 KYSVIQCTGYLKSWAPAKMGLEESEDRKYSVIQCTGYLKSWAPAKMGLEESEGEGEGGET 480
           +Y+VI CTGYLKSWAPAK+GLE+                         +E++GE    E+
Sbjct: 325 RYNVIHCTGYLKSWAPAKIGLED-------------------------QENDGE---NES 356

Query: 481 CTLSCLVAVGRVLADKTRI---LNKQVNLRPIQFLSRHALDGKFLFV------------- 524
           C LSCLVAVGRVL   + +      + N++PIQF+SRH LDGKFL+V             
Sbjct: 357 CNLSCLVAVGRVLPHISTVAAATQTRPNVQPIQFISRHTLDGKFLYVDQRATLVLGFLQQ 416

Query: 525 -------------------------------------YQFKNKGGTYVQLQSEWKNFRNP 547
                                                Y+F+ K G +V+LQSEWK+F+NP
Sbjct: 417 ELLGSSMYEYYHHDDITSVAECHKSALQNSEHTTTKIYRFRTKDGGFVKLQSEWKSFKNP 476

Query: 548 WTKDIEYLISKNTLIL 563
           WTK+IEYLI+KNTL+L
Sbjct: 477 WTKEIEYLIAKNTLVL 492

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|305682540|dbj|BAJ16354.1| CYCLE [Thermobia domestica] Back     alignment and taxonomy information
>gi|371534934|gb|AEX32872.1| cycle protein [Aedes aegypti] Back     alignment and taxonomy information
>gi|307186380|gb|EFN72014.1| Aryl hydrocarbon receptor nuclear translocator-like protein 1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|157126327|ref|XP_001654596.1| circadian protein clock/arnt/bmal/pas [Aedes aegypti] gi|108882568|gb|EAT46793.1| AAEL002049-PA, partial [Aedes aegypti] Back     alignment and taxonomy information
>gi|157126329|ref|XP_001654597.1| circadian protein clock/arnt/bmal/pas [Aedes aegypti] gi|108882569|gb|EAT46794.1| AAEL002049-PB, partial [Aedes aegypti] Back     alignment and taxonomy information
>gi|307212674|gb|EFN88377.1| Aryl hydrocarbon receptor nuclear translocator-like protein 1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|383860213|ref|XP_003705585.1| PREDICTED: aryl hydrocarbon receptor nuclear translocator-like protein 1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|158294552|ref|XP_556301.3| AGAP005655-PA [Anopheles gambiae str. PEST] gi|157015616|gb|EAL39880.3| AGAP005655-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|350406507|ref|XP_003487795.1| PREDICTED: aryl hydrocarbon receptor nuclear translocator-like protein 1-like, partial [Bombus impatiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query563
FB|FBgn0023094413 cyc "cycle" [Drosophila melano 0.152 0.208 0.727 1.3e-68
UNIPROTKB|Q9I8T7 633 ARNTL "Aryl hydrocarbon recept 0.154 0.137 0.735 2.7e-64
UNIPROTKB|F8W6J9 526 ARNTL "Aryl hydrocarbon recept 0.154 0.165 0.724 1.8e-62
UNIPROTKB|O00327 626 ARNTL "Aryl hydrocarbon recept 0.154 0.138 0.724 7.5e-61
UNIPROTKB|A0MLS5 626 ARNTL "Aryl hydrocarbon recept 0.154 0.138 0.724 7.5e-61
UNIPROTKB|O88529 626 ARNTL "Aryl hydrocarbon recept 0.154 0.138 0.724 9.6e-61
UNIPROTKB|E1BLF5 626 ARNTL "Uncharacterized protein 0.154 0.138 0.724 9.6e-61
UNIPROTKB|E2R130 627 ARNTL "Uncharacterized protein 0.154 0.138 0.724 9.8e-61
MGI|MGI:1096381 632 Arntl "aryl hydrocarbon recept 0.154 0.137 0.724 1.1e-60
UNIPROTKB|J9NTT7 659 ARNTL "Uncharacterized protein 0.154 0.132 0.724 2e-60
FB|FBgn0023094 cyc "cycle" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 330 (121.2 bits), Expect = 1.3e-68, Sum P(4) = 1.3e-68
 Identities = 64/88 (72%), Positives = 76/88 (86%)

Query:   219 RQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGA--VHS 276
             +QNHSEIEKRRRDKMNTYI ELS+M+PMC AM RKLDKLTVLRMAVQHL+ IRG+  +H 
Sbjct:    32 KQNHSEIEKRRRDKMNTYINELSSMIPMCFAMQRKLDKLTVLRMAVQHLRGIRGSGSLHP 91

Query:   277 YTEGHYKPAFLTDQELKHLILQAAEGFL 304
             +    Y+P+FL+DQELK +ILQA+EGFL
Sbjct:    92 FNGSDYRPSFLSDQELKMIILQASEGFL 119
GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IPI
GO:0046982 "protein heterodimerization activity" evidence=NAS;IPI
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;NAS
GO:0005634 "nucleus" evidence=NAS
GO:0007623 "circadian rhythm" evidence=NAS;TAS
GO:0008062 "eclosion rhythm" evidence=NAS;TAS
GO:0045475 "locomotor rhythm" evidence=NAS;TAS
GO:0048148 "behavioral response to cocaine" evidence=NAS;TAS
GO:0045187 "regulation of circadian sleep/wake cycle, sleep" evidence=IMP;TAS
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=NAS;TAS
GO:0007622 "rhythmic behavior" evidence=TAS
GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=NAS;TAS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0004871 "signal transducer activity" evidence=IEA
GO:0005667 "transcription factor complex" evidence=IEA
GO:0007165 "signal transduction" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=NAS
GO:0003677 "DNA binding" evidence=IDA
GO:0032922 "circadian regulation of gene expression" evidence=IMP
GO:0042594 "response to starvation" evidence=IDA
UNIPROTKB|Q9I8T7 ARNTL "Aryl hydrocarbon receptor nuclear translocator-like protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F8W6J9 ARNTL "Aryl hydrocarbon receptor nuclear translocator-like protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|O00327 ARNTL "Aryl hydrocarbon receptor nuclear translocator-like protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A0MLS5 ARNTL "Aryl hydrocarbon receptor nuclear translocator-like protein 1" [Equus caballus (taxid:9796)] Back     alignment and assigned GO terms
UNIPROTKB|O88529 ARNTL "Aryl hydrocarbon receptor nuclear translocator-like protein 1" [Mesocricetus auratus (taxid:10036)] Back     alignment and assigned GO terms
UNIPROTKB|E1BLF5 ARNTL "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R130 ARNTL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1096381 Arntl "aryl hydrocarbon receptor nuclear translocator-like" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|J9NTT7 ARNTL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query563
pfam0001052 pfam00010, HLH, Helix-loop-helix DNA-binding domai 2e-13
cd0008360 cd00083, HLH, Helix-loop-helix domain, found in sp 6e-13
smart0035353 smart00353, HLH, helix loop helix domain 7e-12
pfam0001052 pfam00010, HLH, Helix-loop-helix DNA-binding domai 2e-05
cd0008360 cd00083, HLH, Helix-loop-helix domain, found in sp 4e-05
smart0035353 smart00353, HLH, helix loop helix domain 2e-04
cd00130103 cd00130, PAS, PAS domain; PAS motifs appear in arc 0.003
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain Back     alignment and domain information 
 Score = 64.4 bits (158), Expect = 2e-13
 Identities = 19/50 (38%), Positives = 34/50 (68%), Gaps = 2/50 (4%)

Query: 219 RQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLK 268
           R+ H+E E+RRRD++N    EL  ++P     ++KL K  +LR+A++++K
Sbjct: 2   RKAHNERERRRRDRINDAFEELRELLP--TPPNKKLSKAEILRLAIEYIK 49

Length = 52
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain Back     alignment and domain information
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain Back     alignment and domain information
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain Back     alignment and domain information
>gnl|CDD|238075 cd00130, PAS, PAS domain; PAS motifs appear in archaea, eubacteria and eukarya Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 563
KOG3558|consensus 768 100.0
KOG3561|consensus 803 100.0
KOG3559|consensus 598 100.0
KOG3560|consensus 712 99.9
KOG3753|consensus 1114 99.79
PF14598111 PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W 99.69
KOG1318|consensus411 99.32
PF0001055 HLH: Helix-loop-helix DNA-binding domain only nucl 99.17
KOG3561|consensus 803 99.08
cd0008360 HLH Helix-loop-helix domain, found in specific DNA 98.99
smart0035353 HLH helix loop helix domain. 98.89
KOG4304|consensus250 98.78
KOG1319|consensus229 98.6
KOG3558|consensus 768 98.36
KOG3559|consensus598 97.67
KOG4029|consensus228 97.25
KOG0561|consensus373 97.18
KOG3560|consensus 712 96.98
KOG2588|consensus 953 96.82
KOG2483|consensus232 96.77
PF0844791 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold 96.2
KOG3960|consensus284 95.16
PLN0321793 transcription factor ATBS1; Provisional 95.11
KOG3910|consensus632 90.9
smart0008643 PAC Motif C-terminal to PAS motifs (likely to cont 89.9
KOG3898|consensus254 88.68
KOG4395|consensus285 88.24
PF14598111 PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W 80.54
>KOG3558|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.2e-57  Score=490.97  Aligned_cols=261  Identities=25%  Similarity=0.397  Sum_probs=211.4

Q ss_pred             cccccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHh--hcccccccCCCCCCccchhHHh
Q psy14584        216 PVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIR--GAVHSYTEGHYKPAFLTDQELK  293 (563)
Q Consensus       216 ~~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~--~~~~~~~~~~~~P~~l~~~el~  293 (563)
                      +.|||+++.|+|.||.|+|.+|.||+++||.+.++.++||||+|||+||.|||.-+  +++.....  ..+....++.++
T Consensus        44 ~~rkEkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRlrk~a~~g~~p~~--e~~~~~~e~~l~  121 (768)
T KOG3558|consen   44 ELRKEKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRLRKFAGAGDPPRA--EGEPENLEQHLG  121 (768)
T ss_pred             HHHhhhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHHHHHhhcCCcccc--cCCCcchhhhhh
Confidence            56899999999999999999999999999999999999999999999999999644  44333111  111222255789


Q ss_pred             HHHHHhhhchhhhhh---chhhchhh---hh---h---------hHHh--hhhhhcCCCCCCccC--CCCCccccCCCCC
Q psy14584        294 HLILQAAEGFLQNHS---EIEKRRRD---KM---N---------TYIT--ELSAMVPTLLPVKTA--DIPAEVSRLCPGA  351 (563)
Q Consensus       294 ~l~LqALdGFLlVvs---~Ily~Se~---ll---q---------D~vh--qlse~~~~~Lp~~~g--~~~~~~~r~~~g~  351 (563)
                      .+|||+||||+|||+   +||||||+   +|   |         ||||  ||+|+.. .|.++.+  .+..+..   ...
T Consensus       122 ~~iLqsLDGFVm~l~~dG~~lYiSEtVS~yLGLSQvELTG~SvFDfiHP~DheE~~e-qL~l~~~~p~~~es~~---~~t  197 (768)
T KOG3558|consen  122 DHILQSLDGFVMALTQDGDFLYISETVSIYLGLSQVELTGSSVFDFIHPCDHEEIAE-QLGLRLTTPEVKESTD---TST  197 (768)
T ss_pred             hhHHhhccceEEEEccCCCEEEEechhHhhhCccceeeecchhhhccCccCHHHHHH-HhccccCCCccccccc---Ccc
Confidence            999999999999999   99999976   33   3         8999  9998754 4444432  2222222   235


Q ss_pred             ceeEEeeecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccccccccccccccCCCcEEEEEEEeee
Q psy14584        352 RRSFFCRMKCKHTPASSSSSSSSNSAPSTQPGPNTPSPGTGSCVKEEPDTTTGAAASCHRKKKQQQSDRKYSVIQCTGYL  431 (563)
Q Consensus       352 ~RsFfcRMKctl~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~kk~~~~~~~~Y~VihctG~l  431 (563)
                      +|+||+|||||+++                       |||+                +|+|      +++||||||||++
T Consensus       198 eRsFflRMKsTLT~-----------------------RGRt----------------lnlK------Sa~yKvlh~tgh~  232 (768)
T KOG3558|consen  198 ERSFFLRMKSTLTK-----------------------RGRT----------------LNLK------SAGYKVLHCTGHL  232 (768)
T ss_pred             ceeEEEEeeeeecc-----------------------CCce----------------eeee------ccceeEEEEeeee
Confidence            89999999999984                       4654                5565      8999999999999


Q ss_pred             eecCCccCCCcccccCceeEeeeeccccccCccccCcccccCCCCCCCccccceeEEEEeeccccccccccccCcCCcce
Q psy14584        432 KSWAPAKMGLEESEDRKYSVIQCTGYLKSWAPAKMGLEESEGEGEGGETCTLSCLVAVGRVLADKTRILNKQVNLRPIQF  511 (563)
Q Consensus       432 k~~~p~~~g~~~~~~~~y~v~hctgYlk~w~p~g~~l~~~e~e~~d~~~~~~scLVaigr~~p~s~p~~~~ei~~~~~eF  511 (563)
                      |...+...+- .         .| ||                      ..++.|||++|.++|+   +...|+++++.+|
T Consensus       233 rv~~~~sh~s-~---------~~-g~----------------------~~Pl~~lV~~a~alp~---ps~~EipL~~~~F  276 (768)
T KOG3558|consen  233 RVYNNPSHNS-P---------LC-GY----------------------KEPLLGLVALAEALPP---PSYTEIPLDCHMF  276 (768)
T ss_pred             eeccCCCCCC-c---------cc-Cc----------------------cccchheeeeeccCCC---CcccccccCCcee
Confidence            9875422110 0         12 22                      1137899999999999   7889999999999


Q ss_pred             eEEeecCCcEEEE-------------------------------------------------EEEEeeCCcEEEEEeEEE
Q psy14584        512 LSRHALDGKFLFV-------------------------------------------------YQFKNKGGTYVQLQSEWK  542 (563)
Q Consensus       512 vsRHslDgKftfV-------------------------------------------------YRfl~K~GgyVwlqT~~t  542 (563)
                      +|||++||||+||                                                 ||||+|+||||||||+||
T Consensus       277 vtRhs~DmkityCedRisdlm~y~PeeLvGrS~Ye~~Ha~Ds~~v~KSh~dL~~KGQv~TgyYR~lak~GGyvWlQTqAT  356 (768)
T KOG3558|consen  277 VTRHSLDMKITYCEDRISDLMDYEPEELVGRSCYEFVHALDSDRVRKSHHDLLTKGQVVTGYYRLLAKNGGYVWLQTQAT  356 (768)
T ss_pred             EEeeecceeEEEEchhHHHHhcCCHHHhhchhHHHhhhHhhhhHHHHHHHHHHhcCccchhHHHHHHhcCCeEEEEeeeE
Confidence            9999999999999                                                 999999999999999999


Q ss_pred             EeecCCCCCccEEEEEEEEcC
Q psy14584        543 NFRNPWTKDIEYLISKNTLIL  563 (563)
Q Consensus       543 ~f~Np~s~~~e~IVcvn~Vis  563 (563)
                      +++|.++.+.|+|||||||||
T Consensus       357 Vi~~tkn~q~q~IicVnYVlS  377 (768)
T KOG3558|consen  357 VIYNTKNPQEQNIICVNYVLS  377 (768)
T ss_pred             EEecCCCCCcceEEEEEeeec
Confidence            999999999999999999997

>KOG3561|consensus Back     alignment and domain information
>KOG3559|consensus Back     alignment and domain information
>KOG3560|consensus Back     alignment and domain information
>KOG3753|consensus Back     alignment and domain information
>PF14598 PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W_A 3F1P_A 3H82_A 3F1N_A 4F3L_B 4DJ3_A 2KDK_A Back     alignment and domain information
>KOG1318|consensus Back     alignment and domain information
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt) Back     alignment and domain information
>KOG3561|consensus Back     alignment and domain information
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>smart00353 HLH helix loop helix domain Back     alignment and domain information
>KOG4304|consensus Back     alignment and domain information
>KOG1319|consensus Back     alignment and domain information
>KOG3558|consensus Back     alignment and domain information
>KOG3559|consensus Back     alignment and domain information
>KOG4029|consensus Back     alignment and domain information
>KOG0561|consensus Back     alignment and domain information
>KOG3560|consensus Back     alignment and domain information
>KOG2588|consensus Back     alignment and domain information
>KOG2483|consensus Back     alignment and domain information
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [] Back     alignment and domain information
>KOG3960|consensus Back     alignment and domain information
>PLN03217 transcription factor ATBS1; Provisional Back     alignment and domain information
>KOG3910|consensus Back     alignment and domain information
>smart00086 PAC Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Back     alignment and domain information
>KOG3898|consensus Back     alignment and domain information
>KOG4395|consensus Back     alignment and domain information
>PF14598 PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W_A 3F1P_A 3H82_A 3F1N_A 4F3L_B 4DJ3_A 2KDK_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query563
4f3l_B387 Crystal Structure Of The Heterodimeric Clock:bmal1 2e-59
4h10_A73 Intermolecular Recognition Revealed By The Complex 6e-19
4h10_A73 Intermolecular Recognition Revealed By The Complex 2e-04
4f3l_A361 Crystal Structure Of The Heterodimeric Clock:bmal1 2e-08
2kdk_A121 Structure Of Human Circadian Clock Protein Bmal2 C- 1e-07
>pdb|4F3L|B Chain B, Crystal Structure Of The Heterodimeric Clock:bmal1 Transcriptional Activator Complex Length = 387 Back     alignment and structure 
Iteration: 1

 Score =  226 bits (576), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 151/437 (34%), Positives = 208/437 (47%), Gaps = 158/437 (36%)
Query: 218 SRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAVHSY 277
           +R+ HS+IEKRRRDKMN++I EL+++VP C+AMSRKLDKLTVLRMAVQH+KT+RGA + Y
Sbjct: 13  AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATNPY 72
Query: 278 TEGHYKPAFLTDQELKHLILQAAEGFL--------------------QNHSEIE------ 311
           TE +YKP FL+D ELKHLIL+AA+GFL                     N+S+ +      
Sbjct: 73  TEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSL 132
Query: 312 ------------KRRRDKMNTYITELSAMVPTLLPVKTADIPAEVSRLCPGARRSFFCRM 359
                       K +    +T   E      T LPVKT DI    SRLC GARRSFFCRM
Sbjct: 133 FDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKT-DITPGPSRLCSGARRSFFCRM 191
Query: 360 KCKHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVKEEPDTTTGAAASCHRKKKQQQSD 419
           KC                                   E+ D     A++C +KK  ++S 
Sbjct: 192 KCNRPSVKV----------------------------EDKD----FASTCSKKKADRKS- 218
Query: 420 RKYSVIQCTGYLKSWAPAKMGLEESE--DRKYSVIQCTGYLKSWAPAKMXXXXXXXXXXX 477
             +  I  TGYLKSW P KMGL+E    D +   + C                       
Sbjct: 219 --FCTIHSTGYLKSWPPTKMGLDEDNEPDNEGCNLSC----------------------- 253
Query: 478 XXXXXXXXLVAVGRVLADKT-RILNKQVNLRPIQFLSRHALDGKFLFV------------ 524
                   LVA+GR+ +    +  N ++ ++ ++++SRHA+DGKF+FV            
Sbjct: 254 --------LVAIGRLHSHMVPQPANGEIRVKSMEYVSRHAIDGKFVFVDQRATAILAYLP 305
Query: 525 --------------------------------------YQFKNKGGTYVQLQSEWKNFRN 546
                                                 Y+FK K G+++ L+S W +F N
Sbjct: 306 QELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITLRSRWFSFMN 365
Query: 547 PWTKDIEYLISKNTLIL 563
           PWTK++EY++S NT++L
Sbjct: 366 PWTKEVEYIVSTNTVVL 382
>pdb|4H10|A Chain A, Intermolecular Recognition Revealed By The Complex Structure Of Human Clock-bmal1 Basic Helix-loop-helix Domains With E-box Dna Length = 73 Back     alignment and structure
>pdb|4H10|A Chain A, Intermolecular Recognition Revealed By The Complex Structure Of Human Clock-bmal1 Basic Helix-loop-helix Domains With E-box Dna Length = 73 Back     alignment and structure
>pdb|4F3L|A Chain A, Crystal Structure Of The Heterodimeric Clock:bmal1 Transcriptional Activator Complex Length = 361 Back     alignment and structure
>pdb|2KDK|A Chain A, Structure Of Human Circadian Clock Protein Bmal2 C-Terminal Pas Domain Length = 121 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query563
4f3l_B387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 2e-50
4f3l_B387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 2e-08
4f3l_A361 Mclock, circadian locomoter output cycles protein 4e-40
4f3l_A361 Mclock, circadian locomoter output cycles protein 2e-04
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 6e-19
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 1e-08
3gdi_A309 Period circadian protein homolog 2; tandem PAS dom 5e-14
3gdi_A309 Period circadian protein homolog 2; tandem PAS dom 6e-06
4dj3_A317 Period circadian protein homolog 3; PAS domain, ci 4e-13
2kdk_A121 ARYL hydrocarbon receptor nuclear translocator-LI 2e-12
3rty_A339 Period circadian protein; PAS domain, signalling, 2e-11
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 3e-11
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 4e-06
4dj2_A320 Period circadian protein homolog 1; PAS domains, c 5e-11
4dj2_A320 Period circadian protein homolog 1; PAS domains, c 8e-07
1hlo_A80 Protein (transcription factor MAX); transcriptiona 1e-10
1hlo_A80 Protein (transcription factor MAX); transcriptiona 3e-05
3f1p_A117 Endothelial PAS domain-containing protein 1; PAS d 3e-10
3f1p_B121 ARYL hydrocarbon receptor nuclear translocator; PA 3e-10
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 3e-10
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 2e-05
1oj5_A132 Steroid receptor coactivator 1A; transcriptional c 4e-09
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 6e-09
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 5e-04
1a0a_A63 BHLH, protein (phosphate system positive regulator 2e-08
1a0a_A63 BHLH, protein (phosphate system positive regulator 6e-04
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 5e-08
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 4e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 387 Back     alignment and structure
 Score =  177 bits (449), Expect = 2e-50
 Identities = 147/434 (33%), Positives = 202/434 (46%), Gaps = 154/434 (35%)

Query: 218 SRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAVHSY 277
           +R+ HS+IEKRRRDKMN++I EL+++VP C+AMSRKLDKLTVLRMAVQH+KT+RGA + Y
Sbjct: 13  AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATNPY 72

Query: 278 TEGHYKPAFLTDQELKHLILQAAEGF----------------------------LQNHSE 309
           TE +YKP FL+D ELKHLIL+AA+GF                            L   S 
Sbjct: 73  TEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSL 132

Query: 310 IE---KRRRDKMNTYIT-------ELSAMVPTLLPVKTADIPAEVSRLCPGARRSFFCRM 359
            +    +   K+   ++       E      T LPVKT DI    SRLC GARRSFFCRM
Sbjct: 133 FDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKT-DITPGPSRLCSGARRSFFCRM 191

Query: 360 KCKHTPASSSSSSSSNSAPSTQPGPNTPSPGTGSCVKEEPDTTTGAAASCHRKKKQQQSD 419
           KC            ++                                +C +KK  ++  
Sbjct: 192 KCNRPSVKVEDKDFAS--------------------------------TCSKKKADRK-- 217

Query: 420 RKYSVIQCTGYLKSWAPAKMGLEESEDRKYSVIQCTGYLKSWAPAKMGLEESEGEGEGGE 479
             +  I  TGYLKSW P KMGL+E  +                                E
Sbjct: 218 -SFCTIHSTGYLKSWPPTKMGLDEDNEP-----------------------------DNE 247

Query: 480 TCTLSCLVAVGRVL-ADKTRILNKQVNLRPIQFLSRHALDGKFLFV-------------- 524
            C LSCLVA+GR+      +  N ++ ++ ++++SRHA+DGKF+FV              
Sbjct: 248 GCNLSCLVAIGRLHSHMVPQPANGEIRVKSMEYVSRHAIDGKFVFVDQRATAILAYLPQE 307

Query: 525 ------------------------------------YQFKNKGGTYVQLQSEWKNFRNPW 548
                                               Y+FK K G+++ L+S W +F NPW
Sbjct: 308 LLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITLRSRWFSFMNPW 367

Query: 549 TKDIEYLISKNTLI 562
           TK++EY++S NT++
Sbjct: 368 TKEVEYIVSTNTVV 381
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 387 Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 361 Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 361 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65 Back     alignment and structure
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus} Length = 309 Back     alignment and structure
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus} Length = 309 Back     alignment and structure
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus} Length = 317 Back     alignment and structure
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens} Length = 121 Back     alignment and structure
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A Length = 339 Back     alignment and structure
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82 Back     alignment and structure
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82 Back     alignment and structure
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus} Length = 320 Back     alignment and structure
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus} Length = 320 Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A Length = 117 Back     alignment and structure
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 2b02_A* 2k7s_A 2a24_B Length = 121 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83 Back     alignment and structure
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8 Length = 132 Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88 Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88 Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63 Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Length = 76 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query563
4f3l_B387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 100.0
4f3l_A361 Mclock, circadian locomoter output cycles protein 100.0
4dj3_A317 Period circadian protein homolog 3; PAS domain, ci 100.0
4dj2_A320 Period circadian protein homolog 1; PAS domains, c 100.0
3gdi_A309 Period circadian protein homolog 2; tandem PAS dom 100.0
3rty_A339 Period circadian protein; PAS domain, signalling, 99.89
1oj5_A132 Steroid receptor coactivator 1A; transcriptional c 99.75
4h10_A73 ARYL hydrocarbon receptor nuclear translocator-LI 99.42
4h10_B71 Circadian locomoter output cycles protein kaput; B 99.35
1a0a_A63 BHLH, protein (phosphate system positive regulator 99.33
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 99.27
4ati_A118 MITF, microphthalmia-associated transcription fact 99.2
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 99.07
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 99.06
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 99.01
1hlo_A80 Protein (transcription factor MAX); transcriptiona 98.97
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 98.9
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 98.74
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 98.71
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 98.64
4f3l_B387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 98.49
2lfh_A68 DNA-binding protein inhibitor ID-3; structural gen 98.38
4ath_A83 MITF, microphthalmia-associated transcription fact 98.37
2kdk_A121 ARYL hydrocarbon receptor nuclear translocator-LI 98.29
3f1p_A117 Endothelial PAS domain-containing protein 1; PAS d 98.22
3f1p_B121 ARYL hydrocarbon receptor nuclear translocator; PA 98.17
4f3l_A361 Mclock, circadian locomoter output cycles protein 97.75
4aya_A97 DNA-binding protein inhibitor ID-2; cell cycle; 2. 97.58
4dj2_A320 Period circadian protein homolog 1; PAS domains, c 96.89
2vlg_A111 Sporulation kinase A; histidine kinase, two-compon 96.48
2vlg_A111 Sporulation kinase A; histidine kinase, two-compon 96.44
4dj3_A317 Period circadian protein homolog 3; PAS domain, ci 96.32
3gdi_A309 Period circadian protein homolog 2; tandem PAS dom 94.11
3h9w_A115 Diguanylate cyclase with PAS/PAC sensor; alpha-bet 92.74
3mr0_A142 Sensory box histidine kinase/response regulator; P 84.64
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=2.7e-49  Score=415.02  Aligned_cols=284  Identities=53%  Similarity=0.958  Sum_probs=201.9

Q ss_pred             CcccccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHhhcccccccCCCCCCccchhHHhH
Q psy14584        215 LPVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAVHSYTEGHYKPAFLTDQELKH  294 (563)
Q Consensus       215 ~~~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~~~~~~~~~~~~~P~~l~~~el~~  294 (563)
                      .+.+|++|+.+||+||++||..|.||+.|||.+.+..+|+||++||++||+|||.|+++.....+.+++|++++++++.+
T Consensus        10 ~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (387)
T 4f3l_B           10 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATNPYTEANYKPTFLSDDELKH   89 (387)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC------CCSSCTTSCHHHHHH
T ss_pred             hhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcccccccccccCcccCCHHHHHH
Confidence            35589999999999999999999999999999988899999999999999999999977766667788999999999999


Q ss_pred             HHHHhhhchhhhhh----chhhchh---hhh--------h----hHHh--hhhhhc-----------------CCCCCCc
Q psy14584        295 LILQAAEGFLQNHS----EIEKRRR---DKM--------N----TYIT--ELSAMV-----------------PTLLPVK  336 (563)
Q Consensus       295 l~LqALdGFLlVvs----~Ily~Se---~ll--------q----D~vh--qlse~~-----------------~~~Lp~~  336 (563)
                      ++++++|||++|++    +|+|+|+   .+|        +    |+||  |+..+.                 ++..|++
T Consensus        90 ~ll~~~~gfi~v~~~~~G~i~yvs~~~~~~lG~~~~el~g~~~~~~ihp~D~~~~~~~L~~~~~~p~~~~~~~~tg~~~~  169 (387)
T 4f3l_B           90 LILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVK  169 (387)
T ss_dssp             HHHHTCCSEEEEEETTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHSCC------------------
T ss_pred             HHHhcCCCEEEEEecCCeEEEEEchhhHHHcCCCHHHHCCCcHHHhcCCCCHHHHHHHhcccccCccccccCcccCCccC
Confidence            99999999999998    7899883   333        2    6677  554321                 1112222


Q ss_pred             cCCCCCccccCCCCCceeEEeeecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccccccccccccc
Q psy14584        337 TADIPAEVSRLCPGARRSFFCRMKCKHTPASSSSSSSSNSAPSTQPGPNTPSPGTGSCVKEEPDTTTGAAASCHRKKKQQ  416 (563)
Q Consensus       337 ~g~~~~~~~r~~~g~~RsFfcRMKctl~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~kk~~~  416 (563)
                      . +.+++..++|.+.+|+|||||||++...                +            .++.++    .++|+.||.  
T Consensus       170 ~-e~~~~~~~~~~g~~rsF~cRmr~~~~~~----------------~------------~~~~~~----~~~~~~~~~--  214 (387)
T 4f3l_B          170 T-DITPGPSRLCSGARRSFFCRMKCNRPSV----------------K------------VEDKDF----ASTCSKKKA--  214 (387)
T ss_dssp             ---------CCCGGGEEEEEEEEECSCC----------------------------------------------------
T ss_pred             C-CCCCcccccccCCceeEEEeeecccCCc----------------c------------cccccc----ccccccccc--
Confidence            2 3455667788899999999999998631                0            011111    124444431  


Q ss_pred             cCCCcEEEEEEEeeeeecCCccCCCcccccCceeEeeeeccccccCccccCcccccCCCCCCCccccceeEEEEeecccc
Q psy14584        417 QSDRKYSVIQCTGYLKSWAPAKMGLEESEDRKYSVIQCTGYLKSWAPAKMGLEESEGEGEGGETCTLSCLVAVGRVLADK  496 (563)
Q Consensus       417 ~~~~~Y~VihctG~lk~~~p~~~g~~~~~~~~y~v~hctgYlk~w~p~g~~l~~~e~e~~d~~~~~~scLVaigr~~p~s  496 (563)
                       ...+|+|+||+||++.|++...++..                           . .+ .++..++..|||||||++++.
T Consensus       215 -~~~~y~~~~~~G~l~~~~~~~~~~~~---------------------------~-~~-~~~~~~~~~~lvai~r~~~~~  264 (387)
T 4f3l_B          215 -DRKSFCTIHSTGYLKSWPPTKMGLDE---------------------------D-NE-PDNEGCNLSCLVAIGRLHSHM  264 (387)
T ss_dssp             --CCSEEEEEEEEEEEC------------------------------------------------CCCEEEEEEEECCCS
T ss_pred             -CCCceEEEEEEEEEeccccccccccc---------------------------c-cc-cccCCCcceEEEEEEecccCC
Confidence             36788888888888888654332211                           0 01 123345678999999999886


Q ss_pred             ccc-cccccCcCCcceeEEeecCCcEEEE--------------------------------------------------E
Q psy14584        497 TRI-LNKQVNLRPIQFLSRHALDGKFLFV--------------------------------------------------Y  525 (563)
Q Consensus       497 ~p~-~~~ei~~~~~eFvsRHslDgKftfV--------------------------------------------------Y  525 (563)
                      .++ ...++.....+|++||++||+|+||                                                  |
T Consensus       265 ~~~~~~~ei~~~~~~fi~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~ey  344 (387)
T 4f3l_B          265 VPQPANGEIRVKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCY  344 (387)
T ss_dssp             CCSCCCSSSCBCCCEEEEEECTTSBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCE
T ss_pred             CCCCcccccccCCceEEEEECCCCEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEE
Confidence            544 4677888999999999999999999                                                  9


Q ss_pred             EEEeeCCcEEEEEeEEEEeecCCCCCccEEEEEEEEcC
Q psy14584        526 QFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKNTLIL  563 (563)
Q Consensus       526 Rfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcvn~Vis  563 (563)
                      ||++|+|+|||++|.|++|+|+|++++++|||+|++|+
T Consensus       345 R~~~kdG~~vWv~~~~~~~~~~~~g~~~~ivg~~~dIT  382 (387)
T 4f3l_B          345 KFKIKDGSFITLRSRWFSFMNPWTKEVEYIVSTNTVVL  382 (387)
T ss_dssp             EEECTTSCEEEEEEEEEEEEETTTTEEEEEEEEEEECC
T ss_pred             EEEccCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEcc
Confidence            99999999999999999999999999999999999986
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus} Back     alignment and structure
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus} Back     alignment and structure
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus} Back     alignment and structure
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A Back     alignment and structure
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8 Back     alignment and structure
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Back     alignment and structure
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus} Back     alignment and structure
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens} Back     alignment and structure
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A Back     alignment and structure
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens} Back     alignment and structure
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus} Back     alignment and structure
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis} Back     alignment and structure
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis} Back     alignment and structure
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus} Back     alignment and structure
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus} Back     alignment and structure
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei} Back     alignment and structure
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 563
d1an4a_65 a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien 5e-13
d1an4a_65 a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien 5e-05
d1a0aa_63 a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa 2e-12
d1a0aa_63 a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa 6e-06
d1nkpb_83 a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T 6e-12
d1nkpb_83 a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T 2e-04
d1nlwa_79 a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T 1e-11
d1nlwa_79 a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T 6e-05
d1nkpa_88 a.38.1.1 (A:) Myc proto-oncogene protein {Human (H 6e-10
d1nkpa_88 a.38.1.1 (A:) Myc proto-oncogene protein {Human (H 3e-04
d1mdya_68 a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul 6e-10
d1mdya_68 a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul 6e-04
d1am9a_80 a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI 9e-10
d1am9a_80 a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI 0.002
d1oj5a_109 d.110.3.8 (A:) PAS domain of steroid receptor coac 3e-06
d1uklc_61 a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId 1e-04
d2oola2114 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodops 0.001
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (151), Expect = 5e-13
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 219 RQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSR--KLDKLTVLRMAVQHLKTIR 271
           R  H+E+E+RRRDK+N +I +LS ++P     S      K  +L  A  +++ +R
Sbjct: 6   RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELR 60
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63 Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63 Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68 Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68 Back     information, alignment and structure
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 109 Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 114 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query563
d1oj5a_109 PAS domain of steroid receptor coactivator 1A, NCo 99.62
d1a0aa_63 Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce 99.29
d1p97a_114 Hypoxia-inducible factor Hif2a, C-terminal domain 99.2
d1an4a_65 Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960 99.17
d1mdya_68 Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10 99.1
d1nkpb_83 Max protein {Human (Homo sapiens) [TaxId: 9606]} 99.0
d1am9a_80 SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} 98.97
d1nlwa_79 Mad protein {Human (Homo sapiens) [TaxId: 9606]} 98.97
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 98.97
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 98.2
d2oola2114 Sensor protein PhyB2 {Rhodopseudomonas palustris [ 94.1
d1n9la_109 Putative blue light receptor, phot-lov1 domain {Gr 91.41
d1jnua_104 Photoreceptor phy3 flavin-binding domain, lov2 {Ma 90.22
d1bywa_110 Erg potassium channel, N-terminal domain {Human (H 86.65
>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: PAS domain of steroid receptor coactivator 1A, NCo-A1
domain: PAS domain of steroid receptor coactivator 1A, NCo-A1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=3.3e-16  Score=134.76  Aligned_cols=55  Identities=15%  Similarity=0.265  Sum_probs=49.3

Q ss_pred             cceeEEeecCCcEEEE----------------------------------------------------EEEEeeCCcEEE
Q psy14584        509 IQFLSRHALDGKFLFV----------------------------------------------------YQFKNKGGTYVQ  536 (563)
Q Consensus       509 ~eFvsRHslDgKftfV----------------------------------------------------YRfl~K~GgyVw  536 (563)
                      .+|+|||++||||+||                                                    |||++|||.|||
T Consensus         2 e~F~trh~~~g~~~~vd~~~~~~~gy~~~eelig~s~~~f~HPeD~~~~~~~~~~~~~~~~g~~~~~~yR~~~kdG~~vW   81 (109)
T d1oj5a_           2 ESFMTKQDTTGKIISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTMLS   81 (109)
T ss_dssp             CEEEEEECTTCCEEEEECHHHHTTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCEEE
T ss_pred             ceEEEEECCCceEEEECHHHhhHhhcCCHHHHcCCcHHHeECcccchHHHhhHHHHHHHhhcccchhhhhhhhccCcEEE
Confidence            5899999999999999                                                    999999999999


Q ss_pred             EEeEEEEeecCCCCCccEEEEEEEEcC
Q psy14584        537 LQSEWKNFRNPWTKDIEYLISKNTLIL  563 (563)
Q Consensus       537 lqT~~t~f~Np~s~~~e~IVcvn~Vis  563 (563)
                      |+|.|++|+|||++++++|||+|+|+.
T Consensus        82 v~t~~~~~~~~~~~~~~~Ii~~h~i~~  108 (109)
T d1oj5a_          82 AHTRCKLCYPQSPDMQPFIMGIHIIDR  108 (109)
T ss_dssp             EEEEEEEECC----CCCEEEEEEEEEC
T ss_pred             EEEEEEEEECCCCCcccEEEEEEEEec
Confidence            999999999999999999999999974
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]} Back     information, alignment and structure
>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]} Back     information, alignment and structure
>d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure