Psyllid ID: psy14597

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
Protein Sequence
MNQAEVTKLVSRLRIPILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEARDTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYRAQKYAEIAQDLESRANADSSAKSEELAQNNSQTP
Secondary Structure (PSIPRED)
ccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHcccEEEcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccEEEEEcccccccccccccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccEEcccccccccccccHHHHHHHHHHHHHHHHHcccEEccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccEEEEEEcccccccccccccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcccccccc
Coil and Loop (DISEMBL)
MNQAEVTKLVSRLRIpilakhrrlrnpegpqgrVKKLRSIVTALLKYERIevyhydgdeardthkETMDMADFWIEEKNIVHKLFKVLVPrfqnttvsytraynapiphatpeksdlsFHSVIElrgnpfpplvqrAVDSRLHIQNVLLDEAKKEYRAQKYAEIAQDLESranadssaksEELAQNNSQTP
Flexible Loop (DISEMBL)
mnqaevtklvsrlripilakhrrlrnpegpqgrvkklRSIVTALLKyerievyhydgdeardtHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYRAQKYAEIAQDLESRanadssakseelaqnnsqtp
Low Complexity Region (SEG)
MNQAEVTKLVSRLRIPILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEARDTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYRAQKYAEIAQDLESRANADSSAKSEELAQNNSQTP
Disordered region (IsUnstruct)
********LVSRLRIPILAK*************VKKLRSIVTALLKYERIEVYHYDGDEARDTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHA*****DLSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAK**************************************
Disordered Region (DISOPRED)
***********************************KLRSIVTALLKYERIEVYHYDGDEARDTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELRGNPFPPL********LHIQNVLLDEAK**************************************
Disordered Region (DISEMBL)
MNQAEVTKLVSRLRIPILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEARDTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYRAQKYAEIAQDLE**********************
Disordered Region (DISPRO)
*****VTKLVSRLRIPILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEARDTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYRAQKYAEIAQDLESRA*******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNQAEVTKLVSRLRIPILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEARDTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYRAQKYAEIAQDLESRANADSSAKSEELAQNNSQTP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	191	2.2.26 [Sep-21-2011]
Q9NRX2	175	39S ribosomal protein L17	yes	N/A	0.764	0.834	0.349	3e-18
Q9D8P4	176	39S ribosomal protein L17	yes	N/A	0.528	0.573	0.398	5e-17
Q3T0L3	172	39S ribosomal protein L17	yes	N/A	0.659	0.732	0.356	5e-17
Q6PDW6	176	39S ribosomal protein L17	yes	N/A	0.528	0.573	0.398	6e-17
Q5RCA3	175	39S ribosomal protein L17	yes	N/A	0.727	0.794	0.345	7e-17
B3E858	124	50S ribosomal protein L17	yes	N/A	0.460	0.709	0.298	0.0004
A1ALW8	127	50S ribosomal protein L17	yes	N/A	0.502	0.755	0.276	0.0007

>sp|Q9NRX2|RM17_HUMAN 39S ribosomal protein L17, mitochondrial OS=Homo sapiens GN=MRPL17 PE=1 SV=1

 Score = 91.7 bits (226), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 91/166 (54%), Gaps = 20/166 (12%)

Query: 12  RLRIPILAKHRRL--RNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------- 61
           RL +     H R+  R   GP+ R+  LR+++T L+++ERIE      DE R        
Sbjct: 2   RLSVAAAISHGRVFRRMGLGPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLID 61

Query: 62  -----DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSD 116
                DT++  M MADFW+ EK+++ KLF+VL PR+++ T  YTR     IP+ + +++ 
Sbjct: 62  YGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQTGGYTRMLQ--IPNRSLDRAK 119

Query: 117 LSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYRAQKYA 162
           +   +VIE +GN  PPL     DS L + N LL   +++ R  + A
Sbjct: 120 M---AVIEYKGNCLPPLPLPRRDSHLTLLNQLLQGLRQDLRQSQEA 162

Homo sapiens (taxid: 9606)

>sp|Q9D8P4|RM17_MOUSE 39S ribosomal protein L17, mitochondrial OS=Mus musculus GN=Mrpl17 PE=1 SV=1

 Score = 87.4 bits (215), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 67/118 (56%), Gaps = 17/118 (14%)

Query: 29  GPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------------DTHKETMDMADFWI 75
           GP+ R+  LR+++T L+++ERIE      DE R             DT++  M MADFW+
Sbjct: 21  GPESRIHLLRNLLTGLVRHERIEATWARADEMRGYAEKLIDYGKLGDTNERAMRMADFWL 80

Query: 76  EEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELRGNPFPPL 133
            EK+++ KLFKVL PRFQ    +YTR    P      ++ D +  +VIE +GN  PPL
Sbjct: 81  TEKDLIPKLFKVLAPRFQGQNGNYTRMLQIP----NRKEQDRAKMAVIEYKGNYLPPL 134

Mus musculus (taxid: 10090)

>sp|Q3T0L3|RM17_BOVIN 39S ribosomal protein L17, mitochondrial OS=Bos taurus GN=MRPL17 PE=1 SV=1

 Score = 87.4 bits (215), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 17/143 (11%)

Query: 29  GPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------------DTHKETMDMADFWI 75
           GP+ R+  L++++T L+++ERIE      DE R             DT++  M MADFW+
Sbjct: 21  GPESRIHLLQNLLTGLVRHERIEASWARVDELRGYAEKLIDYGKLGDTNERAMRMADFWL 80

Query: 76  EEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELRGNPFPPLVQ 135
            EK+++ KLF+VL PR+Q     YTR    P       + D +  +VIE +GN  PPL  
Sbjct: 81  TEKDLIPKLFQVLAPRYQGQNGGYTRMLQIP----NRNQQDRAKMAVIEYKGNCLPPLPL 136

Query: 136 RAVDSRLHIQNVLLDEAKKEYRA 158
              DS L + N LL   +++  A
Sbjct: 137 PRRDSNLTLLNQLLRGLRQDQEA 159

Bos taurus (taxid: 9913)

>sp|Q6PDW6|RM17_RAT 39S ribosomal protein L17, mitochondrial OS=Rattus norvegicus GN=Mrpl17 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 67/118 (56%), Gaps = 17/118 (14%)

Query: 29  GPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------------DTHKETMDMADFWI 75
           GP+ R+  LR+++T L+++ERIE      DE R             DT++  M MADFW+
Sbjct: 21  GPESRIHLLRNLLTGLVRHERIEATWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWL 80

Query: 76  EEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELRGNPFPPL 133
            EK+++ KLFKVL PRFQ    +YTR    P      ++ D +  +VIE +GN  PPL
Sbjct: 81  TEKDLIPKLFKVLAPRFQGQNGNYTRMLQIP----NRKEQDRAKMAVIEYKGNCLPPL 134

Rattus norvegicus (taxid: 10116)

>sp|Q5RCA3|RM17_PONAB 39S ribosomal protein L17, mitochondrial OS=Pongo abelii GN=MRPL17 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 20/159 (12%)

Query: 12  RLRIPILAKHRRL--RNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------- 61
           RL +     H R+  R   GP+ R+  LR+++T L+++ERIE      DE R        
Sbjct: 2   RLSVCAAISHGRVFRRMGLGPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLID 61

Query: 62  -----DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSD 116
                DT++  M MADFW+ EK+++ KLF+VL PR+++    YTR     IP+ + +++ 
Sbjct: 62  YGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQNGGYTRMRQ--IPNRSLDRAK 119

Query: 117 LSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKE 155
           +   +VIE +GN  PPL     DS L + N LL   +++
Sbjct: 120 M---AVIEYKGNCLPPLPLPRRDSHLTLLNQLLQGLRQD 155

Pongo abelii (taxid: 9601)

>sp|B3E858|RL17_GEOLS 50S ribosomal protein L17 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rplQ PE=3 SV=1

 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 16/104 (15%)

Query: 33  RVKKLRSIVTALLKYERIEVYHYDGDEARDTHKETMDM-----------ADFWIEEKNIV 81
           R+   R++VT+LL +ERI        E R   ++ + +           A  +I EK++V
Sbjct: 17  RIAMFRNMVTSLLNHERIVTTDAKAKEIRSVAEKMITLGKRGDLHAHRQAAAYIREKSVV 76

Query: 82  HKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIEL 125
            KLF  + PR+++    YTR     I        D +  SVIEL
Sbjct: 77  TKLFSTIAPRYKDRAGGYTR-----IIKLGQRLGDAASLSVIEL 115

Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) (taxid: 398767)

>sp|A1ALW8|RL17_PELPD 50S ribosomal protein L17 OS=Pelobacter propionicus (strain DSM 2379) GN=rplQ PE=3 SV=1

 Score = 43.9 bits (102), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 16/112 (14%)

Query: 37  LRSIVTALLKYERIEVYHYDGDEARDTHKETMDM-----------ADFWIEEKNIVHKLF 85
            R++VT+L  +E+I        E R   ++ + +           A  +I EK++V KLF
Sbjct: 21  FRNMVTSLFAHEKITTTDAKAKEIRSVAEKMITLGKRGDLHSTRIAAAFIREKSVVTKLF 80

Query: 86  KVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELRGNPFPPLVQRA 137
             + PR++     YTR     I        D +  S+IEL    F P   RA
Sbjct: 81  STIAPRYKERAGGYTR-----IIKVGSRNGDAAPMSIIELVEEEFTPKASRA 127

Pelobacter propionicus (strain DSM 2379) (taxid: 338966)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
357607733	189	hypothetical protein KGM_06533 [Danaus p	0.869	0.878	0.5	2e-45
242246961	184	39S ribosomal protein L17, mitochondrial	0.863	0.896	0.551	4e-45
121543909	240	putative mitochondrial ribosomal protein	0.931	0.741	0.477	4e-44
170046982	196	39S ribosomal protein L17, mitochondrial	0.942	0.918	0.484	4e-44
194747355	176	GF25043 [Drosophila ananassae] gi|190623	0.848	0.920	0.522	1e-43
158301533	194	AGAP001865-PA [Anopheles gambiae str. PE	0.910	0.896	0.5	2e-43
312371494	204	hypothetical protein AND_22031 [Anophele	0.869	0.813	0.510	2e-42
195429216	201	GK16542 [Drosophila willistoni] gi|19415	0.848	0.805	0.510	7e-42
91080193	189	PREDICTED: similar to AGAP001865-PA [Tri	0.863	0.873	0.505	1e-41
332373614	219	unknown [Dendroctonus ponderosae]	0.926	0.808	0.487	1e-41

>gi|357607733|gb|EHJ65664.1| hypothetical protein KGM_06533 [Danaus plexippus]

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/184 (50%), Positives = 127/184 (69%), Gaps = 18/184 (9%)

Query: 1   MNQAEVTKLVSRLRIPILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEA 60
           MNQA++TKLVS+LRI +   HRRLRNPEGP+GR+ +LR  VT L+KYERIE+ +   DEA
Sbjct: 1   MNQADITKLVSKLRIKVPPTHRRLRNPEGPEGRLNRLRKTVTGLIKYERIELNYNRADEA 60

Query: 61  R--------------DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAP 106
           R              D HK TM++AD+W+ EK +VHKLFKVLVPRF+N++ ++TR Y AP
Sbjct: 61  RQYAERLISEAISHGDCHKPTMEIADYWLLEKELVHKLFKVLVPRFENSSSAFTRMYKAP 120

Query: 107 IPHATPEKSDLSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYRAQKYAEIAQ 166
                P    +   +++EL+GNP+P L  R  +++L +QNVLLD AK +YR  KYAEI++
Sbjct: 121 ----KPAYGRVIEKTILELKGNPYPSLTTRQPNNKLLLQNVLLDAAKYDYRQTKYAEISE 176

Query: 167 DLES 170
            + +
Sbjct: 177 KMST 180

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242246961|ref|NP_001156156.1| 39S ribosomal protein L17, mitochondrial [Acyrthosiphon pisum] gi|239788142|dbj|BAH70763.1| ACYPI004127 [Acyrthosiphon pisum]

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 101/183 (55%), Positives = 123/183 (67%), Gaps = 18/183 (9%)

Query: 1   MNQAEVTKLVSRLRIPILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEA 60
           MNQAEV++LVS+LRI I  +H+ L+ PEGPQGR+ KLR  V AL KYER+E+ +   DE 
Sbjct: 1   MNQAEVSQLVSKLRIRINPRHKNLKCPEGPQGRLNKLRKTVNALFKYERLELNYTLADET 60

Query: 61  R--------------DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAP 106
           R              DTHK TM+MAD+WIEEK ++HKLFKVLVPRF +   SYT  Y A 
Sbjct: 61  RGYAERLISEAIRHGDTHKPTMEMADYWIEEKQLIHKLFKVLVPRFNDYQTSYTMLYRA- 119

Query: 107 IPHATPEKSDLSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYRAQKYAEIAQ 166
            P A PE   +   SV+ELRGNPFP ++ +  D R  I NVLLDEAKK YRA+KY EI +
Sbjct: 120 -PKAYPE--IVYPRSVLELRGNPFPAILPQRSDQRNFIHNVLLDEAKKAYRAEKYEEITK 176

Query: 167 DLE 169
            LE
Sbjct: 177 SLE 179

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|121543909|gb|ABM55619.1| putative mitochondrial ribosomal protein L17 [Maconellicoccus hirsutus]

 Score =  182 bits (463), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 95/199 (47%), Positives = 133/199 (66%), Gaps = 21/199 (10%)

Query: 1   MNQAEVTKLVSRLRIPILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEA 60
           MNQA++T L+S+LRI +    R+L+NP GP+GR+ KLR IV AL+KYER+E+ +   DEA
Sbjct: 1   MNQADITHLISKLRIKVAPTARKLKNPAGPEGRLNKLRKIVNALVKYERLELQYPRADEA 60

Query: 61  R--------------DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAP 106
           R              D+HK TM+MA FW+EEK +VHKLFKVL PRF++  V+YT  Y AP
Sbjct: 61  RGYAERLISEAIRHGDSHKPTMEMASFWLEEKQLVHKLFKVLAPRFKDYQVAYTALYKAP 120

Query: 107 IPHATPEKSDLSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYRAQKYAEIAQ 166
             +      +L  +S++ELRGNPFPPL+     ++  I NVLL+EA++EYR +KYAEIA 
Sbjct: 121 KKYP----DELLSYSILELRGNPFPPLIFDGSRNKNVIHNVLLEEARREYRKEKYAEIAA 176

Query: 167 DL---ESRANADSSAKSEE 182
            +   E++ N   + K++E
Sbjct: 177 KVLSSENQQNQSGNVKNKE 195

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170046982|ref|XP_001851021.1| 39S ribosomal protein L17, mitochondrial [Culex quinquefasciatus] gi|167869569|gb|EDS32952.1| 39S ribosomal protein L17, mitochondrial [Culex quinquefasciatus]

 Score =  182 bits (463), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 96/198 (48%), Positives = 129/198 (65%), Gaps = 18/198 (9%)

Query: 1   MNQAEVTKLVSRLRIPILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEA 60
           MNQAEV KL+S+LRI I  +HR ++N +GP+GR+ KLR  VTAL+K+ERIE+ +   DEA
Sbjct: 1   MNQAEVAKLMSQLRIAIRPRHRNIKNVDGPEGRLDKLRKTVTALVKHERIELNYQRADEA 60

Query: 61  R--------------DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAP 106
           R              D HK TM+MAD+W+ EK +VHKLFKVL PRF++  VS TR Y AP
Sbjct: 61  RGYAERLISDAIRYGDCHKPTMEMADYWLVEKQLVHKLFKVLAPRFEDCKVSATRMYKAP 120

Query: 107 IPHATPEKSDLSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYRAQKYAEIAQ 166
             +    +      +V+ELRGNP+PPLVQ    +R  + NVLLDEA+K++R +KYAEIA 
Sbjct: 121 KDYPGWYRK----RAVLELRGNPYPPLVQNLAQNRSLLHNVLLDEARKDFRKEKYAEIAA 176

Query: 167 DLESRANADSSAKSEELA 184
            +   A+    +  E +A
Sbjct: 177 QIGQDASNSVGSGGEAVA 194

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194747355|ref|XP_001956117.1| GF25043 [Drosophila ananassae] gi|190623399|gb|EDV38923.1| GF25043 [Drosophila ananassae]

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 94/180 (52%), Positives = 126/180 (70%), Gaps = 18/180 (10%)

Query: 1   MNQAEVTKLVSRLRIPILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEA 60
           MNQA+V+KL+S+LRI I  +HR L+N +GP+GR+ KLR  VTAL+K+ERIE+++   DEA
Sbjct: 1   MNQADVSKLMSQLRIAIRPRHRNLKNKDGPEGRLLKLRKTVTALVKHERIELFYNRADEA 60

Query: 61  R--------------DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAP 106
           R              DTH  TM+MAD+W+ EK +VHKLFKVLVPR++N TVSYTR +NAP
Sbjct: 61  RGYAELLISNAIRHGDTHNATMEMADYWLLEKQLVHKLFKVLVPRYENYTVSYTRMFNAP 120

Query: 107 IPHATPEKSDLSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYRAQKYAEIAQ 166
             +      +    SV+ELRGNP+P L+     ++  + NVLLDEA+KEYR +K AE+AQ
Sbjct: 121 RTYPGIYYKN----SVLELRGNPYPSLIVDQSQNKNLLHNVLLDEARKEYRRKKLAELAQ 176

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158301533|ref|XP_321202.3| AGAP001865-PA [Anopheles gambiae str. PEST] gi|157012518|gb|EAA01755.3| AGAP001865-PA [Anopheles gambiae str. PEST]

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 96/192 (50%), Positives = 127/192 (66%), Gaps = 18/192 (9%)

Query: 1   MNQAEVTKLVSRLRIPILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEA 60
           MNQAEVTKL+S+LRI +  +HR L+N +GP+GR+ KLR  VTAL+K+ERIE+ +   DEA
Sbjct: 1   MNQAEVTKLMSQLRIAVRPRHRNLKNIDGPEGRLAKLRKTVTALVKHERIELNYQRADEA 60

Query: 61  R--------------DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAP 106
           R              D HK TM+MAD+W+ EK +VHKLFKVLVPRF+   VS TR Y AP
Sbjct: 61  RGYAERLISDAIRHGDCHKPTMEMADYWLLEKQLVHKLFKVLVPRFEEYKVSATRMYKAP 120

Query: 107 IPHATPEKSDLSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYRAQKYAEIAQ 166
             +    +      +V+ELRGNP+PPL+    ++R  + NVL+DEAKK+YR +KYAEIA 
Sbjct: 121 KEYPGWYRK----RAVLELRGNPYPPLLPNQSNNRNLLHNVLMDEAKKDYRREKYAEIAA 176

Query: 167 DLESRANADSSA 178
            + + A    S 
Sbjct: 177 QIGTEAAVPGSG 188

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312371494|gb|EFR19670.1| hypothetical protein AND_22031 [Anopheles darlingi]

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 94/184 (51%), Positives = 123/184 (66%), Gaps = 18/184 (9%)

Query: 1   MNQAEVTKLVSRLRIPILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEA 60
           MNQAEVTKL+S LRI +  +HR L+NP GP+GR+ KLR  VTAL+K+ERIE+ +   DEA
Sbjct: 1   MNQAEVTKLMSALRIAVRPRHRNLKNPRGPEGRLDKLRKTVTALVKHERIELNYQRADEA 60

Query: 61  R--------------DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAP 106
           R              D HK TM+MADFW+ EK +VHKLFKVL PRF+   VS TR Y AP
Sbjct: 61  RGYAERLISDAIRHGDCHKPTMEMADFWLVEKPLVHKLFKVLAPRFEEYKVSATRMYKAP 120

Query: 107 IPHATPEKSDLSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYRAQKYAEIAQ 166
             +    +      +V+ELRGNP+PPL+  + ++R  + NVL+DEA+KE+R +KY EIA 
Sbjct: 121 KDYPGWYRK----RAVLELRGNPYPPLLPNSSNNRNLLHNVLMDEARKEHRREKYEEIAA 176

Query: 167 DLES 170
            + S
Sbjct: 177 QIGS 180

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195429216|ref|XP_002062660.1| GK16542 [Drosophila willistoni] gi|194158745|gb|EDW73646.1| GK16542 [Drosophila willistoni]

 Score =  175 bits (444), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 94/184 (51%), Positives = 124/184 (67%), Gaps = 22/184 (11%)

Query: 1   MNQAEVTKLVSRLRIPILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEA 60
           MNQA+V+KL+S+LRI +  K+R L+NP+GP+GR+ KLR  VTAL+K+ERIE+Y+   DEA
Sbjct: 1   MNQADVSKLISQLRIVVRPKNRNLKNPDGPEGRLLKLRKTVTALVKHERIELYYNRADEA 60

Query: 61  R--------------DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAP 106
           R              D HK TM++AD+W+ EK +VHKLFKVLVPR+ N  VSYTR Y AP
Sbjct: 61  RGYAELLISNAIRHGDRHKPTMELADYWLLEKQLVHKLFKVLVPRYDNYNVSYTRMYKAP 120

Query: 107 --IPHATPEKSDLSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYRAQKYAEI 164
              P    +K      SV+ELRGNP+P L      +R  + NVLLDEA+KE+R +K A++
Sbjct: 121 RDYPGMYYKK------SVLELRGNPYPTLCADQTQNRNLLHNVLLDEARKEFRREKVADL 174

Query: 165 AQDL 168
           A  L
Sbjct: 175 ANKL 178

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080193|ref|XP_971209.1| PREDICTED: similar to AGAP001865-PA [Tribolium castaneum] gi|270005643|gb|EFA02091.1| hypothetical protein TcasGA2_TC007726 [Tribolium castaneum]

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/184 (50%), Positives = 122/184 (66%), Gaps = 19/184 (10%)

Query: 1   MNQAEVTKLVSRLRIPILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEA 60
           MNQA+++KLVS+LRI +  + R+ R+P GP+ R+ KLR  VTAL+K+ERIE+     DE+
Sbjct: 1   MNQADISKLVSQLRIKVNPRLRKFRSPGGPEARLDKLRKTVTALVKHERIELNFPRADES 60

Query: 61  R--------------DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAP 106
           R              D HKETM+MAD+W+ EK +VHKLFKVLVPRF N    YTR Y AP
Sbjct: 61  RMYAERLISDAIRYGDCHKETMEMADYWLVEKQLVHKLFKVLVPRFVNYNTCYTRMYKAP 120

Query: 107 IPHATPEKSDLSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYRAQKYAEIAQ 166
             +  PE  +    +V+EL+GNP+P L+     +R  I NVLLDEAKK YR QKYAEIA 
Sbjct: 121 TLY--PETRE---KAVLELKGNPYPSLLPENYTNRNLIHNVLLDEAKKAYRTQKYAEIAS 175

Query: 167 DLES 170
            +++
Sbjct: 176 KIDA 179

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373614|gb|AEE61948.1| unknown [Dendroctonus ponderosae]

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 95/195 (48%), Positives = 125/195 (64%), Gaps = 18/195 (9%)

Query: 1   MNQAEVTKLVSRLRIPILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEA 60
           MNQAEV+KLVS+LRIP  ++ R+ RNP GP+GR+  LR  VTAL+K+ERIE+      E 
Sbjct: 1   MNQAEVSKLVSQLRIPAPSRLRKFRNPRGPEGRLDSLRKTVTALVKHERIELNFPRAHET 60

Query: 61  R--------------DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAP 106
           R              D HK TM+MAD+W+ EK +VHKLFKVLVPR++N  +SYTR   AP
Sbjct: 61  RLYAERLISDAIRYGDCHKTTMEMADYWLMEKQLVHKLFKVLVPRYENYNISYTRLLKAP 120

Query: 107 IPHATPEKSDLSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYRAQKYAEIAQ 166
            P+   E        V+ELRGNP+P L+     ++  I NVLL+EAKK YR +KYAEIA 
Sbjct: 121 RPYPGHEID----KGVLELRGNPYPSLLPDTSSNKNLIHNVLLEEAKKAYRTRKYAEIAA 176

Query: 167 DLESRANADSSAKSE 181
            +++  +A   +K E
Sbjct: 177 RIDAAESAVGLSKPE 191

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
FB|FBgn0035122	176	mRpL17 "mitochondrial ribosoma	0.832	0.903	0.491	1.9e-37
UNIPROTKB|F1NHT8	167	MRPL17 "Uncharacterized protei	0.748	0.856	0.404	1.5e-21
ZFIN|ZDB-GENE-040912-133	166	mrpl17 "mitochondrial ribosoma	0.759	0.873	0.387	4.4e-20
UNIPROTKB|E2QYN8	208	MRPL17 "Uncharacterized protei	0.748	0.687	0.364	4.6e-18
UNIPROTKB|Q9NRX2	175	MRPL17 "39S ribosomal protein	0.764	0.834	0.349	7.5e-18
MGI|MGI:1351608	176	Mrpl17 "mitochondrial ribosoma	0.701	0.761	0.379	9.5e-18
RGD|70943	176	Mrpl17 "mitochondrial ribosoma	0.701	0.761	0.379	2e-17
UNIPROTKB|F1RMQ4	169	MRPL17 "Uncharacterized protei	0.764	0.863	0.345	2.5e-17
UNIPROTKB|Q3T0L3	172	MRPL17 "39S ribosomal protein	0.748	0.831	0.345	2.9e-16
UNIPROTKB|E9PKV2	142	MRPL17 "39S ribosomal protein	0.712	0.957	0.333	3.4e-13

FB|FBgn0035122 mRpL17 "mitochondrial ribosomal protein L17" [Drosophila melanogaster (taxid:7227)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 88/179 (49%), Positives = 119/179 (66%)

Query:     1 MNQAEVTKLVSRLRIPILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEA 60
             MNQA+VTKL+S+LRI +    R L+N +GP+GR+ KLR  VTAL+K+ERIE+++   DEA
Sbjct:     1 MNQADVTKLMSQLRIAVRPNKRHLKNVDGPEGRLLKLRKTVTALVKHERIELFYNRADEA 60

Query:    61 R--------------DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAP 106
             R              D H+ TM++AD+W+ EK +VHKLFKVLVPR++   VSYTR Y AP
Sbjct:    61 RGYAELLISNAIRHGDRHQATMELADYWLLEKQLVHKLFKVLVPRYETYNVSYTRMYKAP 120

Query:   107 IPHATPEKSDLSFH-SVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYRAQKYAEI 164
                   E   + +  SV+ELRGNP+P L      +R  + NVLLDEA+KE+R QK +E+
Sbjct:   121 -----REYPGIYYRRSVLELRGNPYPSLAADHSQNRNLLHNVLLDEARKEFRRQKLSEL 174

GO:0006412 "translation" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

UNIPROTKB|F1NHT8 MRPL17 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 68/168 (40%), Positives = 94/168 (55%)

Query:    12 RLRIPILAKHRRL--RNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------- 61
             RL +     H R+  R   GP+ R+  LR++VTAL+++ERIE      DE R        
Sbjct:     6 RLSLVAAISHGRVFRRLGRGPRSRLDLLRNLVTALVRHERIEAPWARADEMRGYAERLID 65

Query:    62 -----DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSD 116
                  DT +  M MADFW+ EK+++HKLFKVL PRFQ    SYTR  + P      +  D
Sbjct:    66 YAKRGDTDERAMRMADFWLTEKDLIHKLFKVLAPRFQPHPGSYTRMLHIP----NRDSLD 121

Query:   117 LSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYR--AQKYA 162
              +  +VIEL+GNP+PPL++   DS    +  LL++  K YR  AQ+ A
Sbjct:   122 RAKMAVIELKGNPYPPLIRPRRDS----EKTLLNQLLKGYREDAQRAA 165

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

ZFIN|ZDB-GENE-040912-133 mrpl17 "mitochondrial ribosomal protein L17" [Danio rerio (taxid:7955)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 67/173 (38%), Positives = 97/173 (56%)

Query:    12 RLRIPILAKHRRLRNPEG--PQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------- 61
             RL +  L  H R+    G  P+ R+  LR+++T L+++ERIE      DE R        
Sbjct:     2 RLTLRALISHGRVARKMGLGPESRINILRNLLTGLVRHERIETGKARADEVRFYAEKLID 61

Query:    62 -----DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSD 116
                  DT ++ M MADFW+ EK+++ KLFKVL  RF+N T  YT    A +P+   E  D
Sbjct:    62 YAKKGDTDEKAMKMADFWLTEKDLIPKLFKVLAVRFENQTAGYTNM--ARLPNR--ENLD 117

Query:   117 LSFHSVIELRGNPFPPL--VQRAVDSRLHIQNVLLDEAKKEYRAQKYAEIAQD 167
              +  +V+E +GNPFPPL  V+R   S L++ N LL    K YR +K A++A +
Sbjct:   118 RAAMAVLEYKGNPFPPLNPVKRV--SELNLVNQLL----KGYREEK-AQMATE 163

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|E2QYN8 MRPL17 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 59/162 (36%), Positives = 88/162 (54%)

Query:    12 RLRIPILAKHRRL--RNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------- 61
             RL +     H R+  R   GP+ R+  LR+++T L+++ERIE      DE R        
Sbjct:    38 RLSVAAAISHGRVFRRLGLGPESRIHLLRNLLTGLVRHERIEASWARVDEMRGYAEKLID 97

Query:    62 -----DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSD 116
                  DT+++ M MADFW+ EK+++ KLF+VL PR+Q     YTR     IP+ +  K D
Sbjct:    98 YGKLGDTNEQAMRMADFWLTEKDLIPKLFQVLAPRYQGQNGGYTRMLQ--IPNRS--KQD 153

Query:   117 LSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYRA 158
              +  +VIE +GN  PPL     DS L + N LL   +++ +A
Sbjct:   154 RAKMAVIEYKGNCLPPLPLPRRDSNLTLLNQLLQGLQQDQKA 195

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q9NRX2 MRPL17 "39S ribosomal protein L17, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 58/166 (34%), Positives = 91/166 (54%)

Query:    12 RLRIPILAKHRRL--RNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------- 61
             RL +     H R+  R   GP+ R+  LR+++T L+++ERIE      DE R        
Sbjct:     2 RLSVAAAISHGRVFRRMGLGPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLID 61

Query:    62 -----DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSD 116
                  DT++  M MADFW+ EK+++ KLF+VL PR+++ T  YTR     IP+ + +++ 
Sbjct:    62 YGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQTGGYTRMLQ--IPNRSLDRAK 119

Query:   117 LSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYRAQKYA 162
             ++   VIE +GN  PPL     DS L + N LL   +++ R  + A
Sbjct:   120 MA---VIEYKGNCLPPLPLPRRDSHLTLLNQLLQGLRQDLRQSQEA 162

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IPI

MGI|MGI:1351608 Mrpl17 "mitochondrial ribosomal protein L17" [Mus musculus (taxid:10090)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 58/153 (37%), Positives = 81/153 (52%)

Query:    12 RLRIPILAKHRRL--RNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------- 61
             RL +     H R+  R   GP+ R+  LR+++T L+++ERIE      DE R        
Sbjct:     2 RLSLAAAISHGRVYRRLGLGPESRIHLLRNLLTGLVRHERIEATWARADEMRGYAEKLID 61

Query:    62 -----DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSD 116
                  DT++  M MADFW+ EK+++ KLFKVL PRFQ    +YTR    P      ++ D
Sbjct:    62 YGKLGDTNERAMRMADFWLTEKDLIPKLFKVLAPRFQGQNGNYTRMLQIP----NRKEQD 117

Query:   117 LSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLL 149
              +  +VIE +GN  PPL     DS L + N LL
Sbjct:   118 RAKMAVIEYKGNYLPPLPLPHRDSNLTLLNQLL 150

GO:0000002 "mitochondrial genome maintenance" evidence=TAS

GO:0003735 "structural constituent of ribosome" evidence=ISA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=ISA

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|70943 Mrpl17 "mitochondrial ribosomal protein L17" [Rattus norvegicus (taxid:10116)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 58/153 (37%), Positives = 81/153 (52%)

Query:    12 RLRIPILAKHRRL--RNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------- 61
             RL +     H R+  R   GP+ R+  LR+++T L+++ERIE      DE R        
Sbjct:     2 RLSLAAAISHGRVYRRLGLGPESRIHLLRNLLTGLVRHERIEATWARVDEMRGYAEKLID 61

Query:    62 -----DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSD 116
                  DT++  M MADFW+ EK+++ KLFKVL PRFQ    +YTR    P      ++ D
Sbjct:    62 YGKLGDTNERAMRMADFWLTEKDLIPKLFKVLAPRFQGQNGNYTRMLQIP----NRKEQD 117

Query:   117 LSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLL 149
              +  +VIE +GN  PPL     DS L + N LL
Sbjct:   118 RAKMAVIEYKGNCLPPLPLPHRDSNLTLLNQLL 150

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA;ISO

UNIPROTKB|F1RMQ4 MRPL17 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 57/165 (34%), Positives = 84/165 (50%)

Query:    12 RLRIPILAKHRRL--RNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------- 61
             RL +     H R+  R   GP+ R+  L++++T L+++ERIE      DE R        
Sbjct:     2 RLSVAAAISHGRVFRRLGLGPESRIHLLQNLLTGLVRHERIEASWARVDELRGYAEKLID 61

Query:    62 -----DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSD 116
                  DT++  M MADFW+ EK+++ KLF+VL PRFQ     YTR    P       + D
Sbjct:    62 YGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRFQGQNGGYTRMLQIP----NRNEQD 117

Query:   117 LSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYRAQKY 161
              +  +VIE +GN  PPL     DS L + N LL   +++  A  +
Sbjct:   118 RAKMAVIEYKGNCLPPLPLPRRDSNLTLLNQLLQGLRQDQEASSH 162

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q3T0L3 MRPL17 "39S ribosomal protein L17, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 56/162 (34%), Positives = 82/162 (50%)

Query:    12 RLRIPILAKHRRL--RNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------- 61
             RL       H R+  R   GP+ R+  L++++T L+++ERIE      DE R        
Sbjct:     2 RLSFAAAISHGRVYRRLGLGPESRIHLLQNLLTGLVRHERIEASWARVDELRGYAEKLID 61

Query:    62 -----DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSD 116
                  DT++  M MADFW+ EK+++ KLF+VL PR+Q     YTR    P       + D
Sbjct:    62 YGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYQGQNGGYTRMLQIP----NRNQQD 117

Query:   117 LSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYRA 158
              +  +VIE +GN  PPL     DS L + N LL   +++  A
Sbjct:   118 RAKMAVIEYKGNCLPPLPLPRRDSNLTLLNQLLRGLRQDQEA 159

GO:0005739 "mitochondrion" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E9PKV2 MRPL17 "39S ribosomal protein L17, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 51/153 (33%), Positives = 83/153 (54%)

Query:    12 RLRIPILAKHRRL--RNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEARDTHKETMD 69
             RL +     H R+  R   GP+ R+  LR+++T L+++ERIE      DE R  + E   
Sbjct:     2 RLSVAAAISHGRVFRRMGLGPESRIHLLRNLLTGLVRHERIEAPWARVDEMRG-YAE--- 57

Query:    70 MADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELRGNP 129
                   +EK+++ KLF+VL PR+++ T  YTR     IP+ + +++ ++   VIE +GN 
Sbjct:    58 ------KEKDLIPKLFQVLAPRYKDQTGGYTRMLQ--IPNRSLDRAKMA---VIEYKGNC 106

Query:   130 FPPLVQRAVDSRLHIQNVLLDEAKKEYRAQKYA 162
              PPL     DS L + N LL   +++ R  + A
Sbjct:   107 LPPLPLPRRDSHLTLLNQLLQGLRQDLRQSQEA 139

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3T0L3	RM17_BOVIN	No assigned EC number	0.3566	0.6596	0.7325	yes	N/A
Q9NRX2	RM17_HUMAN	No assigned EC number	0.3493	0.7643	0.8342	yes	N/A
Q5RCA3	RM17_PONAB	No assigned EC number	0.3459	0.7277	0.7942	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	191
pfam01196	97	pfam01196, Ribosomal_L17, Ribosomal protein L17	1e-05
TIGR00059	112	TIGR00059, L17, ribosomal protein L17	1e-05
COG0203	116	COG0203, RplQ, Ribosomal protein L17 [Translation,	1e-05
PRK05591	113	PRK05591, rplQ, 50S ribosomal protein L17; Validat	0.001

>gnl|CDD|216356 pfam01196, Ribosomal_L17, Ribosomal protein L17

 Score = 42.0 bits (100), Expect = 1e-05
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 20/102 (19%)

Query: 37  LRSIVTALLKYERIEVYHYDGDEAR-------------DTHKETMDMADFWIEEKNIVHK 83
           LR++ T+L+++ERIE       E R             D H     ++  ++ +K +V K
Sbjct: 2   LRNLATSLIRHERIETTLAKAKELRPYAEKLITLAKKGDLHARRQALS--FLRDKELVKK 59

Query: 84  LFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIEL 125
           LF  L PR+ +    YTR          P + D +  ++IEL
Sbjct: 60  LFDELAPRYADRNGGYTRIIKLG-----PRRGDNAPMAIIEL 96

Length = 97

>gnl|CDD|129169 TIGR00059, L17, ribosomal protein L17

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 16/104 (15%)

Query: 33  RVKKLRSIVTALLKYERIEVYHYDGDEARDTHKETMDMA---DF--------WIEEKNIV 81
           R   LR++ +AL+++E+I+       E R   ++ + +A   +F        +I  K IV
Sbjct: 12  RKALLRNLASALIRHEKIKTTLAKAKELRRVVEKLITLAKVDNFNNRREAKAYIRNKEIV 71

Query: 82  HKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIEL 125
           HKLF  + PR+      YTR     I    P + D +  ++IEL
Sbjct: 72  HKLFSEIAPRYAQRPGGYTR-----ILKLGPRRGDAAEMAIIEL 110

Eubacterial and mitochondrial. The mitochondrial form, from yeast, contains an additional 110 amino acids C-terminal to the region found by this model [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 112

>gnl|CDD|223281 COG0203, RplQ, Ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 18/105 (17%)

Query: 33  RVKKLRSIVTALLKYERIEVYHYDGDEARDTHKETM-------DMAD-----FWIEEKNI 80
           R   LR++ T+L+++ERIE       E R    E +       D+A+       + +K+ 
Sbjct: 17  RKAMLRNLATSLIEHERIETTLPKAKELR-RVVEKLITLAKKGDLANRRLAFARLRDKDA 75

Query: 81  VHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIEL 125
           V KLF  + PR+      YTR     I      + D +  ++IEL
Sbjct: 76  VKKLFDEIAPRYAERNGGYTR-----ILKLGFRRGDNAPMAIIEL 115

Length = 116

>gnl|CDD|235522 PRK05591, rplQ, 50S ribosomal protein L17; Validated

 Score = 36.6 bits (86), Expect = 0.001
 Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 24/120 (20%)

Query: 20  KHRRL-RNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------------DTHK 65
           K R+L R       R   LR++ T+L+++ERIE       E R             D H 
Sbjct: 3   KGRKLGRTSSH---RKAMLRNLATSLIEHERIETTLPKAKELRRVVEKLITLAKKGDLHA 59

Query: 66  ETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIEL 125
                A   + +K  VHKLF  + PR+ +    YTR     I      + D +  ++IEL
Sbjct: 60  RRQAFA--RLRDKEAVHKLFDEIAPRYADRNGGYTR-----ILKLGFRRGDNAPMAIIEL 112

Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	191
KOG3280|consensus	171		100.0
PTZ00076	253	60S ribosomal protein L17; Provisional	100.0
COG0203	116	RplQ Ribosomal protein L17 [Translation, ribosomal	100.0
TIGR00059	112	L17 ribosomal protein L17. Eubacterial and mitocho	100.0
PRK05591	113	rplQ 50S ribosomal protein L17; Validated	100.0
PF01196	97	Ribosomal_L17: Ribosomal protein L17; InterPro: IP	100.0

>KOG3280|consensus

Probab=100.00  E-value=1.3e-51  Score=338.42  Aligned_cols=148  Identities=36%  Similarity=0.587  Sum_probs=142.3

Q ss_pred             hhhcccccccccCCCCCCCcHHHHHHHHHHHHHHHhcCceEechhhHHhhc--------------cCChHHHHHHHHhcc
Q psy14597         11 SRLRIPILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR--------------DTHKETMDMADFWIE   76 (191)
Q Consensus        11 ~~lr~~~~~~~R~~k~~~~~~hR~alLRnlvTsLikhERIeTT~~KAKElR--------------~~~~~t~r~a~~~L~   76 (191)
                      +++++.|+|-.+++|+|++++||+++||||||+||+||||||||+||||+|              ++|+++|+|+++||.
T Consensus         2 ~~~~~amt~~~~~~Klgr~~~~R~~lLR~lvt~LvkHErIe~t~ara~Ear~~aEklIt~~~k~g~~~~~~~~~a~~~l~   81 (171)
T KOG3280|consen    2 PRIGVAMTHGRRKLKLGRPPAHRLALLRNLVTQLVKHERIETTWARAKEARRYAEKLITLGKKAGSLHERTARMADGWLR   81 (171)
T ss_pred             CceeEEecccchhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCcHhHHHHHHHhcccc
Confidence            678999999888999999999999999999999999999999999999999              678999999999999


Q ss_pred             chhHHHHHHhhhhhhcCCCCCCeeeEEecCCCCCCCCCCCCCceEEEEecCCCCCCCcccCcCchhhHHHHHHHHHHHHH
Q psy14597         77 EKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEY  156 (191)
Q Consensus        77 ek~lv~KLF~~LaPRy~~R~GGYTRI~kl~~R~~~~~~gD~A~mAiLELvgnp~ppl~~~~~~~~~~l~NvLl~~ar~e~  156 (191)
                      ++++|+|||+||||||.+|+|||||++|+|+|+     ||+|||||||++|||+|++..+.+++.++||||||.++.++|
T Consensus        82 ekdli~KlF~vl~pRY~dr~ggYTRllrlppr~-----~d~apmavlE~~Gn~~p~~~a~~p~~r~~lh~vll~~l~r~~  156 (171)
T KOG3280|consen   82 EKDLLHKLFTVLAPRYKDRNGGYTRLLRLPPRR-----GDRAPMAVLELVGNPLPQQAADRPDTRVNLHKVLLFRLLREF  156 (171)
T ss_pred             cchHHHHHHHHhchhhccCCCCceehhccCccc-----ccccCceeeeecCCccccccCCCchhhhhhHHHHHHHHHHHh
Confidence            999999999999999999999999999999999     999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy14597        157 RAQKYAE  163 (191)
Q Consensus       157 ~~~k~~~  163 (191)
                      +.++-++
T Consensus       157 ~~~~~e~  163 (171)
T KOG3280|consen  157 RPPKEEK  163 (171)
T ss_pred             ccchhhc
Confidence            9766544

>PTZ00076 60S ribosomal protein L17; Provisional

Probab=100.00  E-value=1.6e-42  Score=299.50  Aligned_cols=140  Identities=21%  Similarity=0.311  Sum_probs=127.4

Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHhcCceEechhhHHhhcc-----------CChHHHHHHHHhccchhHHHHHHhhhhhh
Q psy14597         23 RLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEARD-----------THKETMDMADFWIEEKNIVHKLFKVLVPR   91 (191)
Q Consensus        23 ~~k~~~~~~hR~alLRnlvTsLikhERIeTT~~KAKElR~-----------~~~~t~r~a~~~L~ek~lv~KLF~~LaPR   91 (191)
                      ..++|++++||++|||||+|+||+||||+||++||||+|.           ......+++.+||.++++|+|||++||||
T Consensus        19 ~rKLgR~ssHR~AlLRNLvtsLI~hERIeTTlaKAKELR~~AEKLITlAKk~tl~sRR~a~s~L~d~~av~KLF~eLAPR   98 (253)
T PTZ00076         19 FRRAHGQPHHRWDSIKNQLDELLRYGRLELTLPRAKELQQYAEELIYLAKKDTPESNLKVESMLRTPQGRRKLYEKYVPL   98 (253)
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHcCcEEecHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHHhhhH
Confidence            4456889999999999999999999999999999999992           12223388889999999999999999999


Q ss_pred             cCCCCCCeeeEEec-CCCCCCCCCCCCCceEEEEecCCC--CCCCcccCcCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14597         92 FQNTTVSYTRAYNA-PIPHATPEKSDLSFHSVIELRGNP--FPPLVQRAVDSRLHIQNVLLDEAKKEYRAQKYAEIAQDL  168 (191)
Q Consensus        92 y~~R~GGYTRI~kl-~~R~~~~~~gD~A~mAiLELvgnp--~ppl~~~~~~~~~~l~NvLl~~ar~e~~~~k~~~~~~~~  168 (191)
                      |++|+||||||+|+ ++|.     ||+|+|||||||++|  ++|..+++.+..++|+| +++..|++|+  ||.++|.++
T Consensus        99 Y~dR~GGYTRIlK~~g~R~-----GD~ApMAiIELVd~p~e~r~A~pvg~d~~~~i~~-~~~~~r~~~r--~~~~~~~~~  170 (253)
T PTZ00076         99 YRDRPFFFTRVVNQWRLRL-----RDAAPMAYIEFVDRPGEIRPAKPVGFDKIKYIYE-EMKKTRRNFR--KYFNIAKKF  170 (253)
T ss_pred             hcCCCCCeeEEEeCCCCCC-----CCCCCEEEEEeccCcCccccccccchhHHHHHHH-HHHHHHhhHH--HHHHHHHHh
Confidence            99999999999997 6888     999999999999988  88888899999999999 9999999999  999999987


Q ss_pred             hh
Q psy14597        169 ES  170 (191)
Q Consensus       169 ~~  170 (191)
                      +-
T Consensus       171 ~l  172 (253)
T PTZ00076        171 GL  172 (253)
T ss_pred             Cc
Confidence            64

>COG0203 RplQ Ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.9e-41  Score=263.68  Aligned_cols=103  Identities=26%  Similarity=0.359  Sum_probs=97.1

Q ss_pred             ccccccCCCCCCCcHHHHHHHHHHHHHHHhcCceEechhhHHhhc-------------cCChHHHHHHHHhccchhHHHH
Q psy14597         17 ILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------------DTHKETMDMADFWIEEKNIVHK   83 (191)
Q Consensus        17 ~~~~~R~~k~~~~~~hR~alLRnlvTsLikhERIeTT~~KAKElR-------------~~~~~t~r~a~~~L~ek~lv~K   83 (191)
                      |+|++...+++++++||.+|||||+++||+||+|+||++||||+|             ++|++  |+|..||.|+++|+|
T Consensus         1 Mrh~~~~rkl~rtsshR~amlrnla~sLi~he~I~TT~~KAKelr~~vEkLITlaK~~~l~~R--R~a~~~l~d~~~v~k   78 (116)
T COG0203           1 MRHRKKGRKLGRTSSHRKAMLRNLATSLIEHERIETTLPKAKELRRVVEKLITLAKKGDLANR--RLAFARLRDKDAVKK   78 (116)
T ss_pred             CCCCccCCCCCCCHHHHHHHHHHHHHHHHHcCceeecHHHHHHHHHHHHHHHHHhhcccHHHH--HHHHHHcccHHHHHH
Confidence            467777888899999999999999999999999999999999999             34555  999999999999999


Q ss_pred             HHhhhhhhcCCCCCCeeeEEecCCCCCCCCCCCCCceEEEEec
Q psy14597         84 LFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELR  126 (191)
Q Consensus        84 LF~~LaPRy~~R~GGYTRI~kl~~R~~~~~~gD~A~mAiLELv  126 (191)
                      ||++|+|||.+|+||||||+|+|+|+     ||+|||||||||
T Consensus        79 LF~~iapry~~R~GGYtRIlK~g~R~-----GD~A~maiiElV  116 (116)
T COG0203          79 LFDEIAPRYAERNGGYTRILKLGFRR-----GDNAPMAIIELV  116 (116)
T ss_pred             HHHHhChhhcCCCCCeeEEEecCCCC-----CCCCceEEEEeC
Confidence            99999999999999999999999999     999999999997

>TIGR00059 L17 ribosomal protein L17

Probab=100.00  E-value=8.2e-41  Score=260.60  Aligned_cols=97  Identities=28%  Similarity=0.390  Sum_probs=91.8

Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHhcCceEechhhHHhhc-------------cCChHHHHHHHHhccchhHHHHHHhhhhh
Q psy14597         24 LRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------------DTHKETMDMADFWIEEKNIVHKLFKVLVP   90 (191)
Q Consensus        24 ~k~~~~~~hR~alLRnlvTsLikhERIeTT~~KAKElR-------------~~~~~t~r~a~~~L~ek~lv~KLF~~LaP   90 (191)
                      .++|++++||++|||||+|+||+||||+||++||||+|             ++|.+  +++.+||.|+++|+|||++|+|
T Consensus         3 ~klgr~~~hR~allrnl~tsLi~herI~TT~~KAKelr~~aEklIt~AK~~~~~~r--R~~~~~l~~~~~v~KLf~~lap   80 (112)
T TIGR00059         3 RKLGRTSAHRKALLRNLASALIRHEKIKTTLAKAKELRRVVEKLITLAKVDNFNNR--REAKAYIRNKEIVHKLFSEIAP   80 (112)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCeEEECHHHHHHHHHHHHHHHHHhcCCChHHH--HHHHHHhCCHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999             34555  9999999999999999999999


Q ss_pred             hcCCCCCCeeeEEecCCCCCCCCCCCCCceEEEEecC
Q psy14597         91 RFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELRG  127 (191)
Q Consensus        91 Ry~~R~GGYTRI~kl~~R~~~~~~gD~A~mAiLELvg  127 (191)
                      ||++|+||||||+|+++|.     ||+|||||||||+
T Consensus        81 ry~~R~GGYTRI~kl~~R~-----gD~A~maiiElVd  112 (112)
T TIGR00059        81 RYAQRPGGYTRILKLGPRR-----GDAAEMAIIELVD  112 (112)
T ss_pred             HhCCCCCCeEEEEECCCCC-----CCCCCeEEEEecC
Confidence            9999999999999999998     9999999999995

Eubacterial and mitochondrial. The mitochondrial form, from yeast, contains an additional 110 amino acids C-terminal to the region found by this model.

>PRK05591 rplQ 50S ribosomal protein L17; Validated

Probab=100.00  E-value=1.1e-40  Score=260.19  Aligned_cols=98  Identities=30%  Similarity=0.392  Sum_probs=92.2

Q ss_pred             cCCCCCCCcHHHHHHHHHHHHHHHhcCceEechhhHHhhc-------------cCChHHHHHHHHhccchhHHHHHHhhh
Q psy14597         22 RRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------------DTHKETMDMADFWIEEKNIVHKLFKVL   88 (191)
Q Consensus        22 R~~k~~~~~~hR~alLRnlvTsLikhERIeTT~~KAKElR-------------~~~~~t~r~a~~~L~ek~lv~KLF~~L   88 (191)
                      +..++|++++||++|||||+|+||+||||+||++||||+|             ++|.+  +++.+||.|+++|+|||++|
T Consensus         3 ~~rkl~r~~~hR~allrnl~tsLi~herI~TT~~KAKelr~~aEklIt~aK~~~~~~r--R~~~~~L~~~~~v~KLf~~l   80 (113)
T PRK05591          3 KGRKLGRTSSHRKAMLRNLATSLIEHERIETTLPKAKELRRVVEKLITLAKKGDLHAR--RQAFARLRDKEAVHKLFDEI   80 (113)
T ss_pred             CCCCCCCChHHHHHHHHHHHHHHHHcCeEEecHHHHHHHHHHHHHHHHHhhcCChHHH--HHHHHHhCCHHHHHHHHHHH
Confidence            3556799999999999999999999999999999999999             34555  99999999999999999999


Q ss_pred             hhhcCCCCCCeeeEEecCCCCCCCCCCCCCceEEEEec
Q psy14597         89 VPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELR  126 (191)
Q Consensus        89 aPRy~~R~GGYTRI~kl~~R~~~~~~gD~A~mAiLELv  126 (191)
                      +|||++|+||||||+|+|+|.     ||+|+|||||||
T Consensus        81 apry~~R~GGYTRI~k~~~R~-----gD~A~ma~iElV  113 (113)
T PRK05591         81 APRYADRNGGYTRILKLGFRR-----GDNAPMAIIELV  113 (113)
T ss_pred             HHHhCcCCCCeEEEEECCCCC-----CCCCCeEEEEeC
Confidence            999999999999999999998     999999999997

>PF01196 Ribosomal_L17: Ribosomal protein L17; InterPro: IPR000456 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.2e-36  Score=231.69  Aligned_cols=86  Identities=34%  Similarity=0.477  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHhcCceEechhhHHhhcc-----------CChHHHHHHHHhccchhHHHHHHhhhhhhcCCCCCCeeeEEe
Q psy14597         36 KLRSIVTALLKYERIEVYHYDGDEARD-----------THKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYN  104 (191)
Q Consensus        36 lLRnlvTsLikhERIeTT~~KAKElR~-----------~~~~t~r~a~~~L~ek~lv~KLF~~LaPRy~~R~GGYTRI~k  104 (191)
                      |||||+|+||+||||+||++||||+|.           .+..+++++.+||.|+++++|||++|+|||++|+||||||+|
T Consensus         1 llrnlvt~Li~herI~TT~~KAke~r~~aErlIt~ak~~~~~~~r~~~~~l~~~~~v~KLf~~l~pRy~~r~GgYTRi~k   80 (97)
T PF01196_consen    1 LLRNLVTSLIRHERIETTLAKAKELRPYAERLITLAKKGDLHARRQALSWLRDKELVKKLFKELAPRYADRNGGYTRIIK   80 (97)
T ss_dssp             HHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHTSSTHHHHHHHHHCSSSHHHHHHHHTTHHHHTTTSSS-SEEEEE
T ss_pred             ChHHHHHHHHhCCeEEecHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhcchHHHHHHHHHHHHHHccCCCCeEEEEe
Confidence            799999999999999999999999992           244556999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCceEEEEec
Q psy14597        105 APIPHATPEKSDLSFHSVIELR  126 (191)
Q Consensus       105 l~~R~~~~~~gD~A~mAiLELv  126 (191)
                      +|+|.     ||+|+|||||||
T Consensus        81 l~~R~-----gD~A~maiiElV   97 (97)
T PF01196_consen   81 LGPRR-----GDAAPMAIIELV   97 (97)
T ss_dssp             EEECS-----SSTCEEEEEEET
T ss_pred             CCCCC-----CCCCCEEEEEeC
Confidence            99998     999999999997

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L17 is one of the proteins from the large ribosomal subunit. Bacterial L17 is a protein of 120 to 130 amino-acid residues while yeast YmL8 is twice as large (238 residues). The N-terminal half of YmL8 is colinear with the sequence of L17 from Escherichia coli.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3F1F_R 1VSP_L 3PYV_N 3PYR_N 3PYO_N 1VSA_L 3MS1_N 3F1H_R 3D5B_R 3MRZ_N ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	191
2ftc_J	116	Structural Model For The Large Subunit Of The Mamma		2e-13
2cqm_A	122	Solution Structure Of The Mitochondrial Ribosomal P		2e-13

>pdb|2FTC|J Chain J, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 116

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 13/91 (14%)
Query: 29  GPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------------DTHKETMDMADFWI 75
           GP+ R+  LR+++T L+++ERIE      DE R             DT++  M MADFW+
Sbjct: 11  GPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWL 70
Query: 76  EEKNIVHKLFKVLVPRFQNTTVSYTRAYNAP 106
            EK+++ KLF+VL PR+++ T  YTR    P
Sbjct: 71  TEKDLIPKLFQVLAPRYKDQTGGYTRMLQIP 101

>pdb|2CQM|A Chain A, Solution Structure Of The Mitochondrial Ribosomal Protein L17 Isolog Length = 122

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 65/113 (57%), Gaps = 18/113 (15%)
Query: 29  GPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------------DTHKETMDMADFWI 75
           G  G    LR+++T L+++ERIE      DE R             DT++  M MADFW+
Sbjct: 1   GSSGSSGLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWL 60
Query: 76  EEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELRGN 128
            EK+++ KLF+VL PR+++ T  YTR     IP+ + +++ +   +VIE +GN
Sbjct: 61  TEKDLIPKLFQVLAPRYKDQTGGYTRMLQ--IPNRSLDRAKM---AVIEYKGN 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	191
2cqm_A	122	Ribosomal protein L17 isolog; alpha and beta (A+B)	8e-12

>2cqm_A Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.188.1.1 PDB: 2ftc_J 3iy9_S Length = 122

 Score = 58.7 bits (143), Expect = 8e-12
 Identities = 43/118 (36%), Positives = 63/118 (53%), Gaps = 18/118 (15%)

Query: 29  GPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------------DTHKETMDMADFWI 75
           G  G    LR+++T L+++ERIE      DE R             DT++  M MADFW+
Sbjct: 1   GSSGSSGLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWL 60

Query: 76  EEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELRGNPFPPL 133
            EK+++ KLF+VL PR+++ T  YTR     +        D +  +VIE +GN  PPL
Sbjct: 61  TEKDLIPKLFQVLAPRYKDQTGGYTR-----MLQIPNRSLDRAKMAVIEYKGNCLPPL 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	191
2cqm_A	122	Ribosomal protein L17 isolog; alpha and beta (A+B)	100.0
3r8s_N	120	50S ribosomal protein L17; protein biosynthesis, R	100.0
2zjr_K	116	50S ribosomal protein L17; ribosome, large ribosom	100.0
1gd8_A	118	50S ribosomal protein L17; two domains, ribosomal	100.0
3bbo_P	205	Ribosomal protein L17; large ribosomal subunit, sp	100.0

>2cqm_A Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.188.1.1 PDB: 2ftc_J 3iy9_S

Probab=100.00  E-value=1.2e-46  Score=295.98  Aligned_cols=107  Identities=42%  Similarity=0.661  Sum_probs=102.3

Q ss_pred             CcHHHHHHHHHHHHHHHhcCceEechhhHHhhc-------------cCChHHHHHHHHhccchhHHHHHHhhhhhhcCCC
Q psy14597         29 GPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------------DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNT   95 (191)
Q Consensus        29 ~~~hR~alLRnlvTsLikhERIeTT~~KAKElR-------------~~~~~t~r~a~~~L~ek~lv~KLF~~LaPRy~~R   95 (191)
                      ||+||++|||||+|+||+||||+||++||||+|             ++|.+++|++.+||.|+++|+|||++|+|||++|
T Consensus         1 g~~~R~amlrnl~tsLi~herI~TT~~KAKelR~~aEklITlaK~g~~~~r~rR~a~~~l~d~~~v~KLF~elapry~~R   80 (122)
T 2cqm_A            1 GSSGSSGLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQ   80 (122)
T ss_dssp             CCCCCSSHHHHHHHHHHHTTEEEEEHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHCCCTTHHHHHHTTHHHHHHHS
T ss_pred             CcHHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHcCCHHHHHHHHHHHHHHhcCC
Confidence            689999999999999999999999999999999             6787788999999999999999999999999999


Q ss_pred             CCCeeeEEecCCCCCCCCCCCCCceEEEEecCCCCCCCcccCcCc
Q psy14597         96 TVSYTRAYNAPIPHATPEKSDLSFHSVIELRGNPFPPLVQRAVDS  140 (191)
Q Consensus        96 ~GGYTRI~kl~~R~~~~~~gD~A~mAiLELvgnp~ppl~~~~~~~  140 (191)
                      +||||||+|+|+|+     ||+|+||||||||||+|||++.+.++
T Consensus        81 ~GGYTRI~K~~~R~-----GD~A~maiIELVd~p~~pl~~~~~~~  120 (122)
T 2cqm_A           81 TGGYTRMLQIPNRS-----LDRAKMAVIEYKGNCLPPLPLPSGPS  120 (122)
T ss_dssp             CSCCEEEEEECCCS-----SSCCCEEEEEESSCCCCCCCCCCSSC
T ss_pred             CCCeeEEEECCCCC-----CCCCCeEEEEeCCCCCCCCCCcCCCC
Confidence            99999999999998     99999999999999999999877664

>3r8s_N 50S ribosomal protein L17; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_N 3j19_N 2wwq_N 3oat_N* 3oas_N* 3ofd_N 3ofc_N 3ofr_N* 3ofz_N* 3og0_N 3ofq_N 3r8t_N 3i1n_N 1p85_L 1p86_L 1vs8_N 1vs6_N 2aw4_N 2awb_N 1vt2_N ...

Probab=100.00  E-value=4.5e-44  Score=280.67  Aligned_cols=106  Identities=23%  Similarity=0.260  Sum_probs=99.6

Q ss_pred             ccccccCCCCCCCcHHHHHHHHHHHHHHHhcCceEechhhHHhhc-------------cCChHHHHHHHHhccchhHHHH
Q psy14597         17 ILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------------DTHKETMDMADFWIEEKNIVHK   83 (191)
Q Consensus        17 ~~~~~R~~k~~~~~~hR~alLRnlvTsLikhERIeTT~~KAKElR-------------~~~~~t~r~a~~~L~ek~lv~K   83 (191)
                      |+|+++.-++|++++||++|||||+|+||+||||+||++||||+|             ++|.  +|+|.+||.|+++|+|
T Consensus         1 MrH~~~~rkLgr~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~~~l~~--rR~a~~~l~~~~~v~K   78 (120)
T 3r8s_N            1 MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVAN--RRLAFARTRDNEIVAK   78 (120)
T ss_dssp             CCTTCCCCCTTSCHHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHTTSCCHHH--HHHHHHSSCCHHHHHH
T ss_pred             CCCCCCCCCCCCChHHHHHHHHHHHHHHHHcCeEEEcHHHHHHHHHHHHHHHHHHhcCcHHH--HHHHHHHcCCHHHHHH
Confidence            578888889999999999999999999999999999999999999             3344  4999999999999999


Q ss_pred             HHhhhhhhcCCCCCCeeeEEecCCCCCCCCCCCCCceEEEEecCCC
Q psy14597         84 LFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELRGNP  129 (191)
Q Consensus        84 LF~~LaPRy~~R~GGYTRI~kl~~R~~~~~~gD~A~mAiLELvgnp  129 (191)
                      ||++|+|||++|+||||||+|+|+|.     ||+||||||||||.+
T Consensus        79 LF~elapry~~R~GGYTRI~K~~~R~-----GD~A~maiiELVd~~  119 (120)
T 3r8s_N           79 LFNELGPRFASRAGGYTRILKCGFRA-----GDNAPMAYIELVDRS  119 (120)
T ss_dssp             HHHTHHHHTTTCCSCCEEEEEEEECT-----TTCCEEEEEEESSCC
T ss_pred             HHHHHHHHhcCCCCCeEEEEECCCCC-----CCCcCeEEEEEecCC
Confidence            99999999999999999999999998     999999999999864

>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 3pio_K* 3pip_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O

Probab=100.00  E-value=2.2e-43  Score=275.41  Aligned_cols=105  Identities=22%  Similarity=0.260  Sum_probs=94.9

Q ss_pred             ccccccCCCCCCCcHHHHHHHHHHHHHHHhcCceEechhhHHhhcc-----------CChHHHHHHHHhccchhHHHHHH
Q psy14597         17 ILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEARD-----------THKETMDMADFWIEEKNIVHKLF   85 (191)
Q Consensus        17 ~~~~~R~~k~~~~~~hR~alLRnlvTsLikhERIeTT~~KAKElR~-----------~~~~t~r~a~~~L~ek~lv~KLF   85 (191)
                      |+|+++..++|++++||++|||||+|+||+||||+||++||||+|.           .+..++|+|.+||.|+++|+|||
T Consensus         1 Mrh~~~~rkLgr~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~~~l~~rR~a~~~l~~~~~v~KLF   80 (116)
T 2zjr_K            1 MRHGKAGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVM   80 (116)
T ss_dssp             --CCCCCCCCSSCTTHHHHHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHHHHHHTTCSHHHHHHHTTSCCCHHHHHHHH
T ss_pred             CCCCCCCCCCCCChHHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHhCCHHHHHHHH
Confidence            4566777888999999999999999999999999999999999991           23344599999999999999999


Q ss_pred             hhhhhhcCCCCCCeeeEEecCCCCCCCCCCCCCceEEEEec
Q psy14597         86 KVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELR  126 (191)
Q Consensus        86 ~~LaPRy~~R~GGYTRI~kl~~R~~~~~~gD~A~mAiLELv  126 (191)
                      ++|+|||++|+||||||+|+|+|.     ||+|||||||||
T Consensus        81 ~~iapry~~R~GGYTRI~K~~~R~-----GD~A~maiiElV  116 (116)
T 2zjr_K           81 DEVAPKYAERPGGYTRILRVGTRR-----GDGVTMALIELV  116 (116)
T ss_dssp             HTHHHHTTTSCSCCCEEEECCCCT-----TTCCCEEEEEC-
T ss_pred             HHHHHHhCCCCCCeeEEEECCCCC-----CCCCceEEEEeC
Confidence            999999999999999999999998     999999999997

>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1 PDB: 1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q 2hgq_Q 2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R 2wdi_R 2wdj_R 2wdl_R 2wdn_R 2wh2_R ...

Probab=100.00  E-value=1.6e-43  Score=276.88  Aligned_cols=106  Identities=19%  Similarity=0.218  Sum_probs=87.3

Q ss_pred             ccccccCCCCCCCcHHHHHHHHHHHHHHHhcCceEechhhHHhhcc-----------CChHHHHHHHHhccchhHHHHHH
Q psy14597         17 ILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEARD-----------THKETMDMADFWIEEKNIVHKLF   85 (191)
Q Consensus        17 ~~~~~R~~k~~~~~~hR~alLRnlvTsLikhERIeTT~~KAKElR~-----------~~~~t~r~a~~~L~ek~lv~KLF   85 (191)
                      |+|+++..++|++++||++|||||+|+||+||||+||++||||+|.           .+..++|+|.+||.|+++|+|||
T Consensus         1 Mrh~~~~rkLgr~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~g~l~~rR~a~~~l~~~~~v~KLF   80 (118)
T 1gd8_A            1 MRHLKSGRKLNRHSSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLF   80 (118)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHSCCHHHHHHHH
T ss_pred             CCCCCCCCCCCCChHHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHhCCHHHHHHHH
Confidence            4566667788999999999999999999999999999999999991           23334599999999999999999


Q ss_pred             hhhhhhcCCCCCCeeeEEecC-CCCCCCCCCCCCceEEEEecC
Q psy14597         86 KVLVPRFQNTTVSYTRAYNAP-IPHATPEKSDLSFHSVIELRG  127 (191)
Q Consensus        86 ~~LaPRy~~R~GGYTRI~kl~-~R~~~~~~gD~A~mAiLELvg  127 (191)
                      ++|+|||++|+||||||+|+| +|.     ||+||||||||||
T Consensus        81 ~~iapry~~R~GGYTRI~K~~~~R~-----GD~A~maiiELVd  118 (118)
T 1gd8_A           81 DEIAPRYRDRQGGYTRVLKLAERRR-----GDGAPLALVELVE  118 (118)
T ss_dssp             HTHHHHTSSCCSCCEEEEEEEEECT-----TTCCEEEEEEECC
T ss_pred             HHHHHHhCCCCCCeEEEEECCCCCC-----CCCCCeEEEEecC
Confidence            999999999999999999999 998     9999999999996

>3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2

Probab=100.00  E-value=8.3e-41  Score=280.68  Aligned_cols=103  Identities=29%  Similarity=0.307  Sum_probs=97.9

Q ss_pred             ccccccCCCCCCCcHHHHHHHHHHHHHHHhcCceEechhhHHhhc-------------cCChHHHHHHHHhccchhHHHH
Q psy14597         17 ILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------------DTHKETMDMADFWIEEKNIVHK   83 (191)
Q Consensus        17 ~~~~~R~~k~~~~~~hR~alLRnlvTsLikhERIeTT~~KAKElR-------------~~~~~t~r~a~~~L~ek~lv~K   83 (191)
                      |+|+++..|+|++++||++|||||+|+||+||||+||++||||+|             ++|.+  |+|.+||.|+++|+|
T Consensus        90 MrH~~~~rKLgRtssHRkAmLRNLvtsLI~HeRI~TT~aKAKElR~~aEkLITlAK~gdlhaR--R~a~~~L~dk~~V~K  167 (205)
T 3bbo_P           90 MRHGRKVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKR--RQALGFIYEKQIVHA  167 (205)
T ss_dssp             CCTTCCSCCTTSCGGGHHHHHHHHHHHHHHTSCEEECHHHHHHHHHHHHHHHHHHHHCTTHHH--HHHHTTCCCTTHHHH
T ss_pred             cCCccCCCCCCCChHHHHHHHHHHHHHHHhCCeEEecHHHHHHHHHHHHHHHhHhhcCChHHH--HHHHHHhCCHHHHHH
Confidence            578888888899999999999999999999999999999999999             45555  899999999999999


Q ss_pred             HHhhhhhhcCCCCCCeeeEEecCCCCCCCCCCCCCceEEEEec
Q psy14597         84 LFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELR  126 (191)
Q Consensus        84 LF~~LaPRy~~R~GGYTRI~kl~~R~~~~~~gD~A~mAiLELv  126 (191)
                      ||++|+|||++|+||||||+|+|+|.     ||+|||||||||
T Consensus       168 LF~eiaPRY~dR~GGYTRIlKlg~R~-----GD~ApMAiIELV  205 (205)
T 3bbo_P          168 LFAEVPDRYGERNGGYTRIIRTLPRR-----GDNAPMAYIELV  205 (205)
T ss_dssp             HTTSSGGGGSSCCSCCEECCBCSCCS-----SSCCCCEEEEEC
T ss_pred             HHHHHHHHhCCCCCCeeEEEECCCCC-----CCCcceEEEEeC
Confidence            99999999999999999999999998     999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	191
d2cqma1	109	d.188.1.1 (A:28-136) Prokaryotic ribosomal protein	2e-15
d2zjrk1	113	d.188.1.1 (K:3-115) Prokaryotic ribosomal protein	8e-10
d1gd8a_	105	d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {	2e-09
d2qamn1	120	d.188.1.1 (N:1-120) Prokaryotic ribosomal protein	7e-06

>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (163), Expect = 2e-15
 Identities = 42/112 (37%), Positives = 61/112 (54%), Gaps = 18/112 (16%)

Query: 37  LRSIVTALLKYERIEVYHYDGDEAR-------------DTHKETMDMADFWIEEKNIVHK 83
           LR+++T L+++ERIE      DE R             DT++  M MADFW+ EK+++ K
Sbjct: 2   LRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPK 61

Query: 84  LFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELRGNPFPPLVQ 135
           LF+VL PR+++ T  YTR    P         D +  +VIE +GN  PPL  
Sbjct: 62  LFQVLAPRYKDQTGGYTRMLQIP-----NRSLDRAKMAVIEYKGNCLPPLPL 108

>d2zjrk1 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17 {Deinococcus radiodurans [TaxId: 1299]} Length = 113

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 52.1 bits (125), Expect = 8e-10
 Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 22/119 (18%)

Query: 20  KHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------------DTHKE 66
             R+L        RV   R+  TALL+  RI+       E R             D H  
Sbjct: 4   AGRKLNRN--SSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSR 61

Query: 67  TMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIEL 125
            +   D    +K++V K+   + P++      YTR            + D    ++IEL
Sbjct: 62  RLVAQDIH--DKDVVRKVMDEVAPKYAERPGGYTRILRVG-----TRRGDGVTMALIEL 113

>d1gd8a_ d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {Thermus thermophilus [TaxId: 274]} Length = 105

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Thermus thermophilus [TaxId: 274]

 Score = 50.7 bits (121), Expect = 2e-09
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 15/104 (14%)

Query: 33  RVKKLRSIVTALLKYERIEVYHYDGDEARDTHKETMDMA-----------DFWIEEKNIV 81
           R+   R+   +LL + RI        E R      + +A              +++  +V
Sbjct: 4   RLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLV 63

Query: 82  HKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIEL 125
            KLF  + PR+++    YTR            + D +  +++EL
Sbjct: 64  RKLFDEIAPRYRDRQGGYTRVLKLA----ERRRGDGAPLALVEL 103

>d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17 {Escherichia coli [TaxId: 562]} Length = 120

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Escherichia coli [TaxId: 562]

 Score = 41.4 bits (97), Expect = 7e-06
 Identities = 28/118 (23%), Positives = 43/118 (36%), Gaps = 20/118 (16%)

Query: 20  KHRRL-RNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEARDTHKETMDMAD------ 72
             R+L RN      R    R++  +L+++E I+       E R   +  + +A       
Sbjct: 6   SGRQLNRNSSH---RQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVAN 62

Query: 73  -----FWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIEL 125
                    +  IV KLF  L PRF +    YTR              D +  + IEL
Sbjct: 63  RRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCG-----FRAGDNAPMAYIEL 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	191
d2cqma1	109	Prokaryotic ribosomal protein L17 {Human (Homo sap	100.0
d2qamn1	120	Prokaryotic ribosomal protein L17 {Escherichia col	100.0
d2zjrk1	113	Prokaryotic ribosomal protein L17 {Deinococcus rad	100.0
d1gd8a_	105	Prokaryotic ribosomal protein L17 {Thermus thermop	100.0

>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-43  Score=268.17  Aligned_cols=96  Identities=44%  Similarity=0.699  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHhcCceEechhhHHhhc-------------cCChHHHHHHHHhccchhHHHHHHhhhhhhcCCCCCCeeeE
Q psy14597         36 KLRSIVTALLKYERIEVYHYDGDEAR-------------DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRA  102 (191)
Q Consensus        36 lLRnlvTsLikhERIeTT~~KAKElR-------------~~~~~t~r~a~~~L~ek~lv~KLF~~LaPRy~~R~GGYTRI  102 (191)
                      |||||+|+||+||||+||++||||+|             ++|+++++++++|+.|+++|+|||++|+|||++|+||||||
T Consensus         1 llrnl~tsLi~herI~TT~~KAKelr~~~ErLIt~aK~~~~~~r~~~~~~~~l~~k~~v~KLf~~lapry~~R~GGYTRI   80 (109)
T d2cqma1           1 LLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQTGGYTRM   80 (109)
T ss_dssp             HHHHHHHHHHHTTEEEEEHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHCCCTTHHHHHHTTHHHHHHHSCSCCEEE
T ss_pred             ChHHHHHHHHHcCeEEecHHHHHHHHHhHHHHHHHhhcCchhHHHHHHhhhhcccHHHHHHHHHHHhHHHhcCCCCeEEE
Confidence            79999999999999999999999999             67888889999999999999999999999999999999999


Q ss_pred             EecCCCCCCCCCCCCCceEEEEecCCCCCCCccc
Q psy14597        103 YNAPIPHATPEKSDLSFHSVIELRGNPFPPLVQR  136 (191)
Q Consensus       103 ~kl~~R~~~~~~gD~A~mAiLELvgnp~ppl~~~  136 (191)
                      +|+|+|.     ||+|+||||||||||+||++.+
T Consensus        81 ~kl~~R~-----gD~A~ma~iElv~~p~p~~~~p  109 (109)
T d2cqma1          81 LQIPNRS-----LDRAKMAVIEYKGNCLPPLPLP  109 (109)
T ss_dssp             EEECCCS-----SSCCCEEEEEESSCCCCCCCCC
T ss_pred             EecCCCC-----CCCCCeEEEEECCCCCCCCCCC
Confidence            9999998     9999999999999999999864

>d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.4e-43  Score=271.57  Aligned_cols=108  Identities=22%  Similarity=0.248  Sum_probs=100.5

Q ss_pred             ccccccCCCCCCCcHHHHHHHHHHHHHHHhcCceEechhhHHhhcc-----------CChHHHHHHHHhccchhHHHHHH
Q psy14597         17 ILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEARD-----------THKETMDMADFWIEEKNIVHKLF   85 (191)
Q Consensus        17 ~~~~~R~~k~~~~~~hR~alLRnlvTsLikhERIeTT~~KAKElR~-----------~~~~t~r~a~~~L~ek~lv~KLF   85 (191)
                      |+|+.+..++|++++||++|||||+|+||+||||+||++||||+|+           .+..+.+++.+||.|+++|+|||
T Consensus         1 MrH~~~~rklgr~~~hR~allrnl~t~Li~herI~TT~aKAKelr~~~EklIt~aK~~~~~~rr~~~~~l~d~~~v~kLf   80 (120)
T d2qamn1           1 MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLF   80 (120)
T ss_dssp             CCTTCCCCCTTSCTTGGGTTTHHHHHHHHHHSEECCBSHHHHHHHHHHHHHHHHHTSCTTHHHHHHHHSSCCTTHHHHTT
T ss_pred             CCCCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEecHHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccCHHHHHHHH
Confidence            5788888999999999999999999999999999999999999992           23344599999999999999999


Q ss_pred             hhhhhhcCCCCCCeeeEEecCCCCCCCCCCCCCceEEEEecCCC
Q psy14597         86 KVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELRGNP  129 (191)
Q Consensus        86 ~~LaPRy~~R~GGYTRI~kl~~R~~~~~~gD~A~mAiLELvgnp  129 (191)
                      ++|+|||++|+||||||+|+|+|.     ||+|+||||||||+|
T Consensus        81 ~~iapry~~R~GGYTRI~klg~R~-----GD~A~maiiElVd~~  119 (120)
T d2qamn1          81 NELGPRFASRAGGYTRILKCGFRA-----GDNAPMAYIELVDRS  119 (120)
T ss_dssp             TTHHHHTTTCCSCCEECCCCCCCS-----SSCCCBCCEEETTCC
T ss_pred             HHHHhHhcCCCCCeeeeeecCCCC-----CCCCCEEEEEEecCC
Confidence            999999999999999999999998     999999999999976

>d2zjrk1 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=4.9e-41  Score=259.18  Aligned_cols=102  Identities=23%  Similarity=0.274  Sum_probs=94.1

Q ss_pred             ccccCCCCCCCcHHHHHHHHHHHHHHHhcCceEechhhHHhhcc-----------CChHHHHHHHHhccchhHHHHHHhh
Q psy14597         19 AKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEARD-----------THKETMDMADFWIEEKNIVHKLFKV   87 (191)
Q Consensus        19 ~~~R~~k~~~~~~hR~alLRnlvTsLikhERIeTT~~KAKElR~-----------~~~~t~r~a~~~L~ek~lv~KLF~~   87 (191)
                      |+.+..++|++++||++|||||+|+||+||||+||++||||+|.           .+..+.+++.+||.|+++|+|||++
T Consensus         1 H~~~~rklgr~~~hR~allrnl~~sLi~herI~TT~~KAKelr~~~EklIT~AK~~~~~~rr~~~~~l~~k~~v~kLf~~   80 (113)
T d2zjrk1           1 HGKAGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDE   80 (113)
T ss_dssp             CCCCCCCCSSCTTHHHHHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHHHHHHTTCSHHHHHHHTTSCCCHHHHHHHHHT
T ss_pred             CCCCCCCCCCChHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHheecccCChhhhhhhhhhcccHHHHHHHHHH
Confidence            45677788999999999999999999999999999999999992           2333459999999999999999999


Q ss_pred             hhhhcCCCCCCeeeEEecCCCCCCCCCCCCCceEEEEe
Q psy14597         88 LVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIEL  125 (191)
Q Consensus        88 LaPRy~~R~GGYTRI~kl~~R~~~~~~gD~A~mAiLEL  125 (191)
                      |+|||++|+||||||+|+|+|.     ||+|+||||||
T Consensus        81 iapry~~R~GGYTRI~kl~~R~-----gD~A~ma~iEL  113 (113)
T d2zjrk1          81 VAPKYAERPGGYTRILRVGTRR-----GDGVTMALIEL  113 (113)
T ss_dssp             HHHHTTTSCSCCCEEEECCCCT-----TTCCCEEEEEC
T ss_pred             HhHHhcCCCCCeEEEEECCCCC-----CCCCceEEEeC
Confidence            9999999999999999999998     99999999997

>d1gd8a_ d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.4e-39  Score=248.18  Aligned_cols=93  Identities=22%  Similarity=0.274  Sum_probs=85.5

Q ss_pred             cHHHHHHHHHHHHHHHhcCceEechhhHHhhcc-----------CChHHHHHHHHhccchhHHHHHHhhhhhhcCCCCCC
Q psy14597         30 PQGRVKKLRSIVTALLKYERIEVYHYDGDEARD-----------THKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVS   98 (191)
Q Consensus        30 ~~hR~alLRnlvTsLikhERIeTT~~KAKElR~-----------~~~~t~r~a~~~L~ek~lv~KLF~~LaPRy~~R~GG   98 (191)
                      ++||++|||||+|+||+||||+||++||||+|+           .+..+.+++.+||.|+++|+|||++|+|||++|+||
T Consensus         1 sshR~allrnl~t~Li~~erI~TT~~KAKelr~~~EklIt~aK~~~~~~rr~~~~~l~~~~~v~KLf~~lapry~~R~GG   80 (105)
T d1gd8a_           1 SSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLFDEIAPRYRDRQGG   80 (105)
T ss_dssp             CHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHSCCHHHHHHHHHTHHHHTSSCCSC
T ss_pred             ChHHHHHHHHHHHHHHHcCEEEEcHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCC
Confidence            689999999999999999999999999999992           223334999999999999999999999999999999


Q ss_pred             eeeEEecCC-CCCCCCCCCCCceEEEEecC
Q psy14597         99 YTRAYNAPI-PHATPEKSDLSFHSVIELRG  127 (191)
Q Consensus        99 YTRI~kl~~-R~~~~~~gD~A~mAiLELvg  127 (191)
                      ||||+|+|+ |.     ||+|+||||||||
T Consensus        81 YTRI~kl~~~R~-----GD~A~ma~iElVd  105 (105)
T d1gd8a_          81 YTRVLKLAERRR-----GDGAPLALVELVE  105 (105)
T ss_dssp             CEEEEEEEEECT-----TTCCEEEEEEECC
T ss_pred             eEEEEecCCCCC-----CCCCCEEEEEeeC
Confidence            999999975 76     9999999999996