Psyllid ID: psy14614


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90--
MYRQRGTLVVSYSPHSSRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKNKKYRTCPHSTV
ccEEccccHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccEEEEEEEEEEccEEEEEEccccccccccccccccEEEEccccc
ccccccccHHHHHHHccccccHHHHHcccHHHHHHHHHHHcccccccccccEcEEccccccccccEEccccHHHcEcccccHcccccccccc
myrqrgtlvvsysphssrpvalsdleslDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKerelkpggrniavteknkkyrtcphstv
myrqrgtlvvsysphssrpvALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGqakerelkpggrniavteknkkyrtcphstv
MYRQRGTLVVSYSPHSSRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKNKKYRTCPHSTV
***************************LDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQ******************************
MYRQRGTLVVSYSPHSSRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKNKKYRTCPHSTV
******************PVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKNKK*********
MYRQRGTLVVSYSPHSSRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKNKKYRTCP****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MYRQRGTLVVSYSPHSSRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKNKKYRTCPHSTV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query92 2.2.26 [Sep-21-2011]
Q6I6G8 1578 E3 ubiquitin-protein liga yes N/A 0.663 0.038 0.693 1e-18
Q9P2P5 1572 E3 ubiquitin-protein liga yes N/A 0.663 0.038 0.693 2e-18
Q8K4P8 1604 E3 ubiquitin-protein liga no N/A 0.695 0.039 0.646 2e-17
Q76N89 1606 E3 ubiquitin-protein liga no N/A 0.695 0.039 0.646 2e-17
Q9HCE7 757 E3 ubiquitin-protein liga no N/A 0.880 0.107 0.5 2e-14
Q9CUN6 731 E3 ubiquitin-protein liga no N/A 0.880 0.110 0.5 2e-14
Q9PUN2 731 E3 ubiquitin-protein liga N/A N/A 0.880 0.110 0.487 5e-14
Q9VVI3 1007 E3 ubiquitin-protein liga no N/A 0.684 0.062 0.507 1e-13
Q8C863 864 E3 ubiquitin-protein liga no N/A 0.728 0.077 0.492 2e-13
Q96J02 903 E3 ubiquitin-protein liga no N/A 0.728 0.074 0.492 3e-13
>sp|Q6I6G8|HECW2_MOUSE E3 ubiquitin-protein ligase HECW2 OS=Mus musculus GN=Hecw2 PE=2 SV=1 Back     alignment and function desciption
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 51/62 (82%), Gaps = 1/62 (1%)

Query: 22   LSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKN 81
            LSDLE LD EFHQSL W+K++D+ +++LDL F V EE+FGQ  ERELKPGG NI VTEKN
Sbjct: 1349 LSDLEYLDEEFHQSLQWMKDNDI-HDILDLTFTVNEEVFGQITERELKPGGANIPVTEKN 1407

Query: 82   KK 83
            KK
Sbjct: 1408 KK 1409




E3 ubiquitin-protein ligase that mediates ubiquitination of TP73. Acts to stabilize TP73 and enhance activation of transcription by TP73.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q9P2P5|HECW2_HUMAN E3 ubiquitin-protein ligase HECW2 OS=Homo sapiens GN=HECW2 PE=1 SV=2 Back     alignment and function description
>sp|Q8K4P8|HECW1_MOUSE E3 ubiquitin-protein ligase HECW1 OS=Mus musculus GN=Hecw1 PE=2 SV=3 Back     alignment and function description
>sp|Q76N89|HECW1_HUMAN E3 ubiquitin-protein ligase HECW1 OS=Homo sapiens GN=HECW1 PE=1 SV=3 Back     alignment and function description
>sp|Q9HCE7|SMUF1_HUMAN E3 ubiquitin-protein ligase SMURF1 OS=Homo sapiens GN=SMURF1 PE=1 SV=2 Back     alignment and function description
>sp|Q9CUN6|SMUF1_MOUSE E3 ubiquitin-protein ligase SMURF1 OS=Mus musculus GN=Smurf1 PE=2 SV=2 Back     alignment and function description
>sp|Q9PUN2|SMUF1_XENLA E3 ubiquitin-protein ligase SMURF1 OS=Xenopus laevis GN=smurf1 PE=2 SV=1 Back     alignment and function description
>sp|Q9VVI3|NEDD4_DROME E3 ubiquitin-protein ligase Nedd-4 OS=Drosophila melanogaster GN=Nedd4 PE=1 SV=2 Back     alignment and function description
>sp|Q8C863|ITCH_MOUSE E3 ubiquitin-protein ligase Itchy OS=Mus musculus GN=Itch PE=1 SV=2 Back     alignment and function description
>sp|Q96J02|ITCH_HUMAN E3 ubiquitin-protein ligase Itchy homolog OS=Homo sapiens GN=ITCH PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query92
350399424 1280 PREDICTED: E3 ubiquitin-protein ligase H 0.706 0.050 0.738 5e-21
307183265 1191 E3 ubiquitin-protein ligase HECW2 [Campo 0.706 0.054 0.738 6e-21
380029644 1267 PREDICTED: E3 ubiquitin-protein ligase H 0.706 0.051 0.738 6e-21
307207975 1376 E3 ubiquitin-protein ligase HECW2 [Harpe 0.706 0.047 0.738 6e-21
328784479 1276 PREDICTED: e3 ubiquitin-protein ligase H 0.706 0.050 0.738 7e-21
332024049 1298 E3 ubiquitin-protein ligase HECW2 [Acrom 0.706 0.050 0.738 7e-21
156545459 1205 PREDICTED: E3 ubiquitin-protein ligase H 0.706 0.053 0.738 8e-21
322787529 329 hypothetical protein SINV_15550 [Solenop 0.706 0.197 0.738 1e-20
91090886 1285 PREDICTED: similar to E3 ubiquitin-prote 0.706 0.050 0.772 1e-20
383853892 1261 PREDICTED: E3 ubiquitin-protein ligase H 0.706 0.051 0.723 2e-20
>gi|350399424|ref|XP_003485518.1| PREDICTED: E3 ubiquitin-protein ligase HECW2-like [Bombus impatiens] Back     alignment and taxonomy information
 Score =  104 bits (260), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 48/65 (73%), Positives = 56/65 (86%)

Query: 19   PVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVT 78
            P +LSDLESLD EFHQSL+WIKE D++ E L+L F+VTEE+ G+  ERELKPGGRNIAVT
Sbjct: 1047 PASLSDLESLDQEFHQSLMWIKERDISIEPLELTFSVTEELLGRVAERELKPGGRNIAVT 1106

Query: 79   EKNKK 83
            EKNKK
Sbjct: 1107 EKNKK 1111




Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183265|gb|EFN70134.1| E3 ubiquitin-protein ligase HECW2 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|380029644|ref|XP_003698477.1| PREDICTED: E3 ubiquitin-protein ligase HECW2-like [Apis florea] Back     alignment and taxonomy information
>gi|307207975|gb|EFN85534.1| E3 ubiquitin-protein ligase HECW2 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|328784479|ref|XP_392900.4| PREDICTED: e3 ubiquitin-protein ligase HECW2-like [Apis mellifera] Back     alignment and taxonomy information
>gi|332024049|gb|EGI64267.1| E3 ubiquitin-protein ligase HECW2 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|156545459|ref|XP_001606831.1| PREDICTED: E3 ubiquitin-protein ligase HECW2-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|322787529|gb|EFZ13617.1| hypothetical protein SINV_15550 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|91090886|ref|XP_973247.1| PREDICTED: similar to E3 ubiquitin-protein ligase HECW2 (HECT, C2 and WW domain-containing protein 2) (NEDD4-like E3 ubiquitin-protein ligase 2) [Tribolium castaneum] gi|270013232|gb|EFA09680.1| hypothetical protein TcasGA2_TC011808 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|383853892|ref|XP_003702456.1| PREDICTED: E3 ubiquitin-protein ligase HECW2-like [Megachile rotundata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query92
UNIPROTKB|I3L5X8366 LOC100738946 "Uncharacterized 0.663 0.166 0.693 1.9e-18
ZFIN|ZDB-GENE-060503-2 1552 hecw1 "HECT, C2 and WW domain 0.695 0.041 0.692 1.2e-17
UNIPROTKB|F1PQF5 1263 HECW2 "Uncharacterized protein 0.663 0.048 0.693 3e-17
UNIPROTKB|G3MXP2 1368 G3MXP2 "Uncharacterized protei 0.663 0.044 0.693 3.4e-17
UNIPROTKB|J9NSV9 1432 HECW2 "Uncharacterized protein 0.663 0.042 0.693 3.6e-17
UNIPROTKB|F1N645 1434 F1N645 "Uncharacterized protei 0.663 0.042 0.693 3.6e-17
UNIPROTKB|Q9P2P5 1572 HECW2 "E3 ubiquitin-protein li 0.663 0.038 0.693 4e-17
UNIPROTKB|F1NTZ8 1576 HECW2 "Uncharacterized protein 0.663 0.038 0.693 4e-17
MGI|MGI:2685817 1578 Hecw2 "HECT, C2 and WW domain 0.663 0.038 0.693 4e-17
RGD|1593244 1578 Hecw2 "HECT, C2 and WW domain 0.663 0.038 0.693 4e-17
UNIPROTKB|I3L5X8 LOC100738946 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
 Score = 225 (84.3 bits), Expect = 1.9e-18, P = 1.9e-18
 Identities = 43/62 (69%), Positives = 51/62 (82%)

Query:    22 LSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKN 81
             LSDLE LD EFHQSL W+K++D+ +++LDL F V EE+FGQ  ERELKPGG NI VTEKN
Sbjct:   207 LSDLEYLDEEFHQSLQWMKDNDI-HDILDLTFTVNEEVFGQITERELKPGGANIPVTEKN 265

Query:    82 KK 83
             KK
Sbjct:   266 KK 267




GO:0005622 "intracellular" evidence=IEA
GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA
ZFIN|ZDB-GENE-060503-2 hecw1 "HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PQF5 HECW2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|G3MXP2 G3MXP2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9NSV9 HECW2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1N645 F1N645 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9P2P5 HECW2 "E3 ubiquitin-protein ligase HECW2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NTZ8 HECW2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:2685817 Hecw2 "HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1593244 Hecw2 "HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9P2P5HECW2_HUMAN6, ., 3, ., 2, ., -0.69350.66300.0388yesN/A
Q6I6G8HECW2_MOUSE6, ., 3, ., 2, ., -0.69350.66300.0386yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query92
cd00078 352 cd00078, HECTc, HECT domain; C-terminal catalytic 5e-21
smart00119 328 smart00119, HECTc, Domain Homologous to E6-AP Carb 6e-20
COG5021 872 COG5021, HUL4, Ubiquitin-protein ligase [Posttrans 5e-18
pfam00632 298 pfam00632, HECT, HECT-domain (ubiquitin-transferas 2e-15
>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information
 Score = 84.2 bits (209), Expect = 5e-21
 Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 1/67 (1%)

Query: 18  RPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEI-FGQAKERELKPGGRNIA 76
           +P++L DLE LD E ++SL  + ++D   + L+L F +  +  FG A   ELKPGGR+I 
Sbjct: 123 KPLSLEDLEELDPELYKSLKELLDNDGDEDDLELTFTIELDSSFGGAVTVELKPGGRDIP 182

Query: 77  VTEKNKK 83
           VT +NK+
Sbjct: 183 VTNENKE 189


It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains. Length = 352

>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 92
COG5021 872 HUL4 Ubiquitin-protein ligase [Posttranslational m 99.94
KOG0941|consensus 850 99.91
KOG0942|consensus 1001 99.89
cd00078 352 HECTc HECT domain; C-terminal catalytic domain of 99.89
smart00119 336 HECTc Domain Homologous to E6-AP Carboxyl Terminus 99.88
KOG0939|consensus 720 99.87
KOG4427|consensus 1096 99.79
PF00632 317 HECT: HECT-domain (ubiquitin-transferase); InterPr 99.77
KOG0170|consensus 621 99.64
KOG0940|consensus 358 99.6
KOG0943|consensus 3015 99.32
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
Probab=99.94  E-value=3.3e-27  Score=192.30  Aligned_cols=90  Identities=38%  Similarity=0.577  Sum_probs=85.5

Q ss_pred             CeeecCCCHHHHHhhcCCCCCcchHhhhcHHHHHHHHHHHhCCCCccceeeeEEEEeeeCCeeEEEeccCCCCccccChh
Q psy14614          1 MYRQRGTLVVSYSPHSSRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEK   80 (92)
Q Consensus         1 ~~id~~f~~~f~K~lLg~~~tl~DL~~~Dp~l~~sL~~ll~~d~~~~~l~l~Ft~~~~~~g~~~~veL~p~G~~i~VT~~   80 (92)
                      ++||++||++|||+|||+|++++||+++||++|+||.||+++++++..+++||++..+.||..++|||||||++|+||++
T Consensus       620 ~~LD~~F~~~fyKklL~~~~sl~Dl~s~Dpe~y~sLv~ll~~~~d~~~l~l~Fsve~~~fg~~~tVeLipnG~ni~VT~~  699 (872)
T COG5021         620 RILDVQFSKAFYKKLLGKPVSLVDLESLDPELYRSLVWLLNNDIDETILDLTFTVEDDSFGESRTVELIPNGRNISVTNE  699 (872)
T ss_pred             ceeeecchHHHHHHHhCCCCchhhhhhcCHHHHHHHHHHHcCCCCcceeeeeEEEeecccCceeEEEeccCCccccccch
Confidence            47999999999999999999999999999999999999999999883399999999999999999999999999999999


Q ss_pred             hHHHHhcccc
Q psy14614         81 NKKYRTCPHS   90 (92)
Q Consensus        81 N~~eYv~~~~   90 (92)
                      ||+|||.++.
T Consensus       700 Nk~eYV~~vv  709 (872)
T COG5021         700 NKKEYVKKVV  709 (872)
T ss_pred             HHHHHHHHHH
Confidence            9999998763



>KOG0941|consensus Back     alignment and domain information
>KOG0942|consensus Back     alignment and domain information
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>KOG0939|consensus Back     alignment and domain information
>KOG4427|consensus Back     alignment and domain information
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' [] Back     alignment and domain information
>KOG0170|consensus Back     alignment and domain information
>KOG0940|consensus Back     alignment and domain information
>KOG0943|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query92
3tug_A 398 Crystal Structure Of The Hect Domain Of Itch E3 Ubi 1e-14
2xbb_A 386 Nedd4 Hect:ub Complex Length = 386 2e-13
1nd7_A 374 Conformational Flexibility Underlies Ubiquitin Liga 8e-12
3jw0_C 385 E2~ubiquitin-Hect Length = 385 5e-11
3jvz_C 385 E2~ubiquitin-Hect Length = 385 5e-11
2oni_A 392 Catalytic Domain Of The Human Nedd4-Like E3 Ligase 9e-11
1zvd_A 380 Regulation Of Smurf2 Ubiquitin Ligase Activity By A 3e-10
3h1d_A 405 Structure Of The Huwe1 Hect Domain Length = 405 3e-10
3olm_A 429 Structure And Function Of A Ubiquitin Binding Site 6e-10
3g1n_A 388 Catalytic Domain Of The Human E3 Ubiquitin-Protein 8e-10
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin Ligase Length = 398 Back     alignment and structure

Iteration: 1

Score = 75.1 bits (183), Expect = 1e-14, Method: Composition-based stats. Identities = 33/67 (49%), Positives = 50/67 (74%) Query: 17 SRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIA 76 ++PV L DLES+D EF+ SL+W+KE+++ L++ F+V +EI G+ K +LKP G NI Sbjct: 164 NKPVGLKDLESIDPEFYNSLIWVKENNIEECDLEMYFSVDKEILGEIKSHDLKPNGGNIL 223 Query: 77 VTEKNKK 83 VTE+NK+ Sbjct: 224 VTEENKE 230
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex Length = 386 Back     alignment and structure
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation Mediated By The Wwp1 Hect Domain E3 Ligase Length = 374 Back     alignment and structure
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase Length = 392 Back     alignment and structure
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By Anchoring The E2 To The Hect Domain Length = 380 Back     alignment and structure
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain Length = 405 Back     alignment and structure
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 429 Back     alignment and structure
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase Huwe1 Length = 388 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query92
1nd7_A 374 WW domain-containing protein 1; HECT, ubiquitin, l 6e-30
3h1d_A 405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 9e-30
1zvd_A 380 SMAD ubiquitination regulatory factor 2; ubiquitin 2e-29
3olm_A 429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 7e-29
2oni_A 392 E3 ubiquitin-protein ligase NEDD4-like protein; al 3e-28
1c4z_A 358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 8e-25
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Length = 374 Back     alignment and structure
 Score =  108 bits (271), Expect = 6e-30
 Identities = 28/66 (42%), Positives = 45/66 (68%)

Query: 18  RPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAV 77
           + + + DLES+D EF+ SL+WI+++++    L++ F+V  EI G+    +LK GG NI V
Sbjct: 146 KKLTIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILV 205

Query: 78  TEKNKK 83
           TE+NK 
Sbjct: 206 TEENKD 211


>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Length = 405 Back     alignment and structure
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Length = 380 Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429 Back     alignment and structure
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Length = 392 Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Length = 358 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query92
1zvd_A 380 SMAD ubiquitination regulatory factor 2; ubiquitin 99.95
2oni_A 392 E3 ubiquitin-protein ligase NEDD4-like protein; al 99.94
1nd7_A 374 WW domain-containing protein 1; HECT, ubiquitin, l 99.94
3olm_A 429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 99.94
3h1d_A 405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 99.94
1c4z_A 358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 99.93
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Back     alignment and structure
Probab=99.95  E-value=6.1e-28  Score=181.60  Aligned_cols=88  Identities=35%  Similarity=0.592  Sum_probs=84.5

Q ss_pred             eeecCCCHHHHHhhcCCCCCcchHhhhcHHHHHHHHHHHhCCCCccceeeeEEEEeeeCCeeEEEeccCCCCccccChhh
Q psy14614          2 YRQRGTLVVSYSPHSSRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKN   81 (92)
Q Consensus         2 ~id~~f~~~f~K~lLg~~~tl~DL~~~Dp~l~~sL~~ll~~d~~~~~l~l~Ft~~~~~~g~~~~veL~p~G~~i~VT~~N   81 (92)
                      ++|++||++|||+|+|++++++||+++||++|+||+||+++++++. +++||+++.+.+|...++||+|||++|+||++|
T Consensus       131 ~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~ll~~d~~~~-l~ltF~~~~~~~g~~~~veL~p~G~~i~VT~~N  209 (380)
T 1zvd_A          131 YIDGGFTLPFYKQLLGKSITLDDMELVDPDLHNSLVWILENDITGV-LDHTFCVEHNAYGEIIQHELKPNGKSIPVNEEN  209 (380)
T ss_dssp             CCCCCCCHHHHHHHTTCCCCSTTHHHHCHHHHHHHHHHHHSCCTTT-SCCCSEEEEEETTEEEEEESSTTCCCCCCTTTT
T ss_pred             eeCCcCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhCCcccc-ccceeEEeeecCCcEeEEecCCCCCCCcccccc
Confidence            6899999999999999999999999999999999999999999875 999999999999999999999999999999999


Q ss_pred             HHHHhcccc
Q psy14614         82 KKYRTCPHS   90 (92)
Q Consensus        82 ~~eYv~~~~   90 (92)
                      |.|||+++.
T Consensus       210 ~~eYv~l~~  218 (380)
T 1zvd_A          210 KKEYVRLYV  218 (380)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998764



>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 92
d1nd7a_ 374 d.148.1.1 (A:) WW domain-containing protein 1, WWP 1e-14
d1c4za_ 350 d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) 7e-09
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 374 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]
 Score = 65.2 bits (158), Expect = 1e-14
 Identities = 30/71 (42%), Positives = 47/71 (66%)

Query: 12  YSPHSSRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPG 71
           Y    S+ + + DLES+D EF+ SL+WI+++++    L++ F+V  EI G+    +LK G
Sbjct: 140 YKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLG 199

Query: 72  GRNIAVTEKNK 82
           G NI VTE+NK
Sbjct: 200 GSNILVTEENK 210


>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query92
d1nd7a_ 374 WW domain-containing protein 1, WWP1 {Human (Homo 99.87
d1c4za_ 350 Ubiquitin-protein ligase E3a (E6ap) {Human (Homo s 99.84
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87  E-value=1.9e-23  Score=154.03  Aligned_cols=89  Identities=35%  Similarity=0.577  Sum_probs=83.6

Q ss_pred             eeecCCCHHHHHhhcCCCCCcchHhhhcHHHHHHHHHHHhCCCCccceeeeEEEEeeeCCeeEEEeccCCCCccccChhh
Q psy14614          2 YRQRGTLVVSYSPHSSRPVALSDLESLDNEFHQSLLWIKEHDVTNEVLDLNFAVTEEIFGQAKERELKPGGRNIAVTEKN   81 (92)
Q Consensus         2 ~id~~f~~~f~K~lLg~~~tl~DL~~~Dp~l~~sL~~ll~~d~~~~~l~l~Ft~~~~~~g~~~~veL~p~G~~i~VT~~N   81 (92)
                      .++++||++|||+|+|++++++||+++||++|++|++++++++++.+++++|+++.+.+|...++||+|||++++||.+|
T Consensus       130 ~~~~~f~~~f~k~Llg~~~t~~DL~~iD~~~~~sl~~l~~~~~e~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~VT~~N  209 (374)
T d1nd7a_         130 FIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEEN  209 (374)
T ss_dssp             CCCCCCCHHHHHHHTTCCCCHHHHHTTCHHHHHHHHHHHSSCSCSSCCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTT
T ss_pred             ccCCCccHHHHHHhcCCCCCHHHHHHhCHHHHHhHHHHHhccccccccceeEEEEeecCCCcceeecCCCCCcccchHHH
Confidence            57899999999999999999999999999999999999999888766899999998888888999999999999999999


Q ss_pred             HHHHhcccc
Q psy14614         82 KKYRTCPHS   90 (92)
Q Consensus        82 ~~eYv~~~~   90 (92)
                      +.+||+++.
T Consensus       210 ~~~yv~~~~  218 (374)
T d1nd7a_         210 KDEYIGLMT  218 (374)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998753



>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure