Psyllid ID: psy14635

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIECWVGSAAPKDQSLLGEDLMTSDEEEDEHTSSACKLKSYSEFSCRYLARQHARLITRPGVKMIVVFGFIGVLIASVSR
Secondary Structure (PSIPRED)
cEEEEHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHcccccccccccccHHHHHHHHHccccHHHcccccHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cEEEEEcHHHcccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MFLITKTFAKytsknqfdsvklnectgiVLRKTGLSIILSSVCKSVAFFsaslipipalRVFNLQLAILILFNMFVLLLVYPAiecwvgsaapkdqsllgedlmtsdeeedehtssacklksysEFSCRYLARQHARLITRPGVKMIVVFGFIGVLIASVSR
Flexible Loop (DISEMBL)
mflitktfakytsknqfdsvklnECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIECWVGSAAPKDQSLLGEDLMTSDEEEdehtssacklksySEFSCRYLARQHARLITRPGVKMIVVFGFIGVLIASVSR
Low Complexity Region (SEG)
MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIECWVGSAAPKDQSLLGEDLMTSdeeedeHTSSACKLKSYSEFSCRYLARQHARLITRPGVKMIVVFGFIGVLIASVSR
Disordered region (IsUnstruct)
**LITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIECWVGSA***************************KLKSYSEFSCRYLARQHARLITRPGVKMIVVFGFIGVLIA****
Disordered Region (DISOPRED)
MFLITKTFAKY*************CTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIECWVGSAAPKDQSLLG************************EFSCRYLARQHARLITRPGVKMIVVFGFIGVLIASVSR
Disordered Region (DISEMBL)
MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIECWVGSAAPKDQSLLGEDLM*************CKLKSYSEFSCRYLARQHARLITRPGVKMIVVFGFIGVLIASVSR
Disordered Region (DISPRO)
MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIECWVGSAAPKDQSLLGEDLMTS*******TSSACKLKSYSEFSCRYLARQHARLITRPGVKMIVVFGFIGVLIASVSR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIECWVGSAAPKDQSLLGEDLMTSDEEEDEHTSSACKLKSYSEFSCRYLARQHARLITRPGVKMIVVFGFIGVLIASVSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
Q98864	1220	Protein patched homolog 1	yes	N/A	0.487	0.064	0.452	8e-14
Q13635	1447	Protein patched homolog 1	yes	N/A	0.5	0.055	0.428	6e-13
Q61115	1434	Protein patched homolog 1	yes	N/A	0.5	0.056	0.428	6e-13
Q90693	1442	Protein patched homolog 1	no	N/A	0.5	0.056	0.428	6e-13
O35595	1182	Protein patched homolog 2	no	N/A	0.487	0.066	0.440	4e-11
Q9Y6C5	1203	Protein patched homolog 2	no	N/A	0.388	0.052	0.460	2e-09
P18502	1286	Protein patched OS=Drosop	yes	N/A	0.462	0.058	0.369	5e-09
Q09614	1408	Protein patched homolog 1	no	N/A	0.432	0.049	0.424	9e-09

>sp|Q98864|PTC1_DANRE Protein patched homolog 1 OS=Danio rerio GN=ptch1 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 5/84 (5%)

Query: 1   MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
           MFL+  +F +  S     ++   E TG  LR+TG S+ L+SV   +AFF A+L+PIPALR
Sbjct: 498 MFLLGHSFTETRS-----NIPFKERTGDCLRRTGTSVALTSVNNMIAFFMAALVPIPALR 552

Query: 61  VFNLQLAILILFNMFVLLLVYPAI 84
            F+LQ A++++FN  + LL++PAI
Sbjct: 553 AFSLQAAVVVVFNFAMALLIFPAI 576

Acts as a receptor for sonic hedgehog (SHH), indian hedgehog (IHH) and desert hedgehog (DHH). Associates with the smoothened protein (SMO) to transduce the hedgehog's proteins signal.
Danio rerio (taxid: 7955)

>sp|Q13635|PTC1_HUMAN Protein patched homolog 1 OS=Homo sapiens GN=PTCH1 PE=1 SV=2

 Score = 73.6 bits (179), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 59/84 (70%), Gaps = 3/84 (3%)

Query: 1   MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
           +FL+   F++ T +N+   +   + TG  L++TG S+ L+S+    AFF A+LIPIPALR
Sbjct: 515 VFLLAHAFSE-TGQNK--RIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALR 571

Query: 61  VFNLQLAILILFNMFVLLLVYPAI 84
            F+LQ A++++FN  ++LL++PAI
Sbjct: 572 AFSLQAAVVVVFNFAMVLLIFPAI 595

Acts as a receptor for sonic hedgehog (SHH), indian hedgehog (IHH) and desert hedgehog (DHH). Associates with the smoothened protein (SMO) to transduce the hedgehog's proteins signal. Seems to have a tumor suppressor function, as inactivation of this protein is probably a necessary, if not sufficient step for tumorigenesis.

Homo sapiens (taxid: 9606)

>sp|Q61115|PTC1_MOUSE Protein patched homolog 1 OS=Mus musculus GN=Ptch1 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 59/84 (70%), Gaps = 3/84 (3%)

Query: 1   MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
           +FL+   F++ T +N+   +   + TG  L++TG S+ L+S+    AFF A+LIPIPALR
Sbjct: 501 VFLLAHAFSE-TGQNK--RIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALR 557

Query: 61  VFNLQLAILILFNMFVLLLVYPAI 84
            F+LQ A++++FN  ++LL++PAI
Sbjct: 558 AFSLQAAVVVVFNFAMVLLIFPAI 581

Acts as a receptor for sonic hedgehog (SHH), indian hedgehog (IHH) and desert hedgehog (DHH). Associates with the smoothened protein (SMO) to transduce the hedgehog's proteins signal. Seems to have a tumor suppressor function, as inactivation of this protein is probably a necessary, if not sufficient step for tumorigenesis.

Mus musculus (taxid: 10090)

>sp|Q90693|PTC1_CHICK Protein patched homolog 1 OS=Gallus gallus GN=PTCH1 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 59/84 (70%), Gaps = 3/84 (3%)

Query: 1   MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
           +FL+   F++ T +N+   +   + TG  L++TG S+ L+S+    AFF A+LIPIPALR
Sbjct: 515 VFLLAHAFSE-TGQNK--RIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALR 571

Query: 61  VFNLQLAILILFNMFVLLLVYPAI 84
            F+LQ A++++FN  ++LL++PAI
Sbjct: 572 AFSLQAAVVVVFNFAMVLLIFPAI 595

Acts as a receptor for sonic hedgehog (SHH), indian hedgehog (IHH) and desert hedgehog (DHH). Associates with the smoothened protein (SMO) to transduce the hedgehog's proteins signal.

Gallus gallus (taxid: 9031)

>sp|O35595|PTC2_MOUSE Protein patched homolog 2 OS=Mus musculus GN=Ptch2 PE=2 SV=2

 Score = 67.4 bits (163), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 5/84 (5%)

Query: 1   MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
           +FL+   F K          ++ EC    LR TG S+ L+SV   VAFF A+L+PIPALR
Sbjct: 471 IFLLAHAFTKAPPDTPLPE-RMGEC----LRSTGTSVALTSVNNMVAFFMAALVPIPALR 525

Query: 61  VFNLQLAILILFNMFVLLLVYPAI 84
            F+LQ AI++  N   ++LV+PAI
Sbjct: 526 AFSLQAAIVVGCNFAAVMLVFPAI 549

May have a role in epidermal development. May act as a receptor for Sonic hedgehog (SHH).

Mus musculus (taxid: 10090)

>sp|Q9Y6C5|PTC2_HUMAN Protein patched homolog 2 OS=Homo sapiens GN=PTCH2 PE=2 SV=2

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 43/63 (68%)

Query: 22  LNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVY 81
           L E  G  L++TG S++L+S+    AF  A+L+PIPALR F+LQ AI++      ++LV+
Sbjct: 487 LQERMGECLQRTGTSVVLTSINNMAAFLMAALVPIPALRAFSLQAAIVVGCTFVAVMLVF 546

Query: 82  PAI 84
           PAI
Sbjct: 547 PAI 549

May have a role in epidermal development. May act as a receptor for Sonic hedgehog (SHH).

Homo sapiens (taxid: 9606)

>sp|P18502|PTC_DROME Protein patched OS=Drosophila melanogaster GN=ptc PE=2 SV=2

 Score = 60.5 bits (145), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 53/84 (63%), Gaps = 9/84 (10%)

Query: 1   MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
           +F++T  +A+   + Q         T ++L+K G SI+ S+   + +FF+A+ IP+PAL+
Sbjct: 506 IFMLTAAYAESNRREQ---------TKLILKKVGPSILFSACSTAGSFFAAAFIPVPALK 556

Query: 61  VFNLQLAILILFNMFVLLLVYPAI 84
           VF LQ AI++  N+   LLV+PA+
Sbjct: 557 VFCLQAAIVMCSNLAAALLVFPAM 580

Segmentation polarity protein. Acts as a receptor for the hedgehog protein (HH). Associates with the smoothened protein (SMO) to transduce the hedgehog signal leading to the activation of wingless, decapentaplegic and patched itself. Participates in cell interactions that establish pattern within the segment and the imaginal disks during development. In the absence of HH, represses the constitutive signaling activity of smo through fused (FU).

Drosophila melanogaster (taxid: 7227)

>sp|Q09614|PTC1_CAEEL Protein patched homolog 1 OS=Caenorhabditis elegans GN=ptc-1 PE=1 SV=2

 Score = 59.3 bits (142), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 3/73 (4%)

Query: 15  NQFDSVKL---NECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILIL 71
           N  D VKL   +    I++R+TG+SI+ +S+   ++F + +L+PIPALR F  Q +IL+ 
Sbjct: 741 NYRDVVKLAGGHAEMAILMRETGMSILCTSINNILSFLTGTLLPIPALRSFCAQSSILLT 800

Query: 72  FNMFVLLLVYPAI 84
           FN   +L +YPAI
Sbjct: 801 FNFIAILTIYPAI 813

Required but not essential for cytokinesis of mitotically proliferating germ cells.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
340727459	1292	PREDICTED: protein patched-like [Bombus	0.962	0.120	0.342	1e-17
357606468	1474	putative hedgehog receptor [Danaus plexi	0.956	0.105	0.354	2e-17
193290170	1307	patched [Nasonia vitripennis]	0.938	0.116	0.343	2e-17
308512755	723	hedgehog receptor [Biston betularia]	0.956	0.214	0.354	1e-16
242015824	1320	patched 1, putative [Pediculus humanus c	0.487	0.059	0.523	2e-16
4883640	1318	putative hedgehog receptor [Junonia coen	0.938	0.115	0.331	4e-16
309253981	744	patched [Bicyclus anynana]	0.956	0.208	0.328	6e-16
307191579	1191	Protein patched [Harpegnathos saltator]	0.493	0.067	0.511	5e-15
380011471	1327	PREDICTED: LOW QUALITY PROTEIN: protein	0.493	0.060	0.5	5e-15
443694342	1464	hypothetical protein CAPTEDRAFT_226628 [	0.493	0.054	0.452	7e-15

>gi|340727459|ref|XP_003402061.1| PREDICTED: protein patched-like [Bombus terrestris]

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 96/181 (53%), Gaps = 25/181 (13%)

Query: 1   MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
           MFL+T T+A+ +     + V   E TG+VL++TGLS++L+ +    AFF+A++IPIPALR
Sbjct: 531 MFLLTHTYAELS----VNEVPSGEQTGVVLKRTGLSVLLAGISNVSAFFAAAIIPIPALR 586

Query: 61  VFNLQLAILILFNMFVLLLVYPAIE----------------CWVGSAAPKDQS----LLG 100
           VF  Q  IL+LFN+  +LLV+PA+                 C + S A + ++    L  
Sbjct: 587 VFCFQAGILLLFNLAAMLLVFPAMVSLDLRRRRSGRSDILCCCLPSNAERRETCTQILTS 646

Query: 101 EDLMTSDEEEDEHTSSACKLKSYSEFSCRYLARQH-ARLITRPGVKMIVVFGFIGVLIAS 159
           +++       +E T + C       FS   LA +H A  +TRP  K+  +   I VL+  
Sbjct: 647 QNVQNESWCSEEDTLTGCSQDDCLTFSLTQLAAKHYAPFVTRPATKVFGMMILIAVLVGC 706

Query: 160 V 160
           V
Sbjct: 707 V 707

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357606468|gb|EHJ65079.1| putative hedgehog receptor [Danaus plexippus]

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/189 (35%), Positives = 99/189 (52%), Gaps = 34/189 (17%)

Query: 1   MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
           MFL+T T+ +     Q   V   E TG+VL+K+GLS++L+S+C  +AF +A+L+PIPA R
Sbjct: 557 MFLLTHTYVE-----QAGDVPREERTGLVLKKSGLSVLLASLCNVMAFLAAALLPIPAFR 611

Query: 61  VFNLQLAILILFNMFVLLLVYPA---IECWVGSAAPKDQ--SLLGEDLMTSDEEEDEHTS 115
           VF LQ AIL+LFN+  +LLV+PA   ++    SAA  D    LL E  M   +  D   S
Sbjct: 612 VFCLQAAILLLFNLGSMLLVFPAMISLDLRRRSAARADLLCCLLPESPMPRKKIPDRTKS 671

Query: 116 SACK-----------------LKSYSEFSC-------RYLARQHARLITRPGVKMIVVFG 151
              K                 +  + + +C       R+   Q+A  I RP +K+  +  
Sbjct: 672 RNSKNDKNNRLDTSRQPLDPDVTEHEQKTCCLSLSLTRWAKNQYAPFIMRPAIKVTSMLA 731

Query: 152 FIGVLIASV 160
            I V++ASV
Sbjct: 732 VIAVILASV 740

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193290170|ref|NP_001123271.1| patched [Nasonia vitripennis]

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 104/189 (55%), Gaps = 37/189 (19%)

Query: 1   MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
           MFL+T T+A+ +  +    +  N+ TG+VL++ GLSI+L+ +C  V+FF+A++IPIPALR
Sbjct: 539 MFLLTHTYAELSVYD----LPRNQQTGVVLKRAGLSILLTGLCNVVSFFAAAIIPIPALR 594

Query: 61  VFNLQLAILILFNMFVLLLVYPAIECWVGSAAPKDQSLLGEDLM----TSDEEEDE---H 113
           VF+LQ A+L+LFN+  +LL++PA+   +     + ++ L  D+M     +D E  E    
Sbjct: 595 VFSLQAAVLLLFNLGAMLLIFPAM---ISLDLRRRRAGL-YDIMCCVRANDSESQEACTQ 650

Query: 114 TSSACKLKS----------------------YSEFSCRYLARQHARLITRPGVKMIVVFG 151
             S CKL S                      YS    + +A+ +A+ +TRP  K+I V  
Sbjct: 651 VHSRCKLASINNNESFAGEEETLTGFSSNDCYSFSPTQLVAKHYAKFVTRPFTKVIGVML 710

Query: 152 FIGVLIASV 160
              +L AS 
Sbjct: 711 LAALLTAST 719

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|308512755|gb|ADO33031.1| hedgehog receptor [Biston betularia]

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 99/192 (51%), Gaps = 37/192 (19%)

Query: 1   MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
           MFL+T T+ +     Q   V   E TG+VL+K+GLS++L+S+C  +AF +A+L+PIPALR
Sbjct: 286 MFLLTHTYVE-----QSGDVPREERTGLVLKKSGLSVLLASLCNVMAFLAAALLPIPALR 340

Query: 61  VFNLQLAILILFNMFVLLLVYPA---IECWVGSAA--------------PKDQSLLGEDL 103
           VF LQ AIL+LFN+  +LLV+PA   ++    SA+              PK    L E  
Sbjct: 341 VFCLQAAILLLFNLGSMLLVFPAMISLDLRRRSASRADLLCCLTPESPLPKRTKKLAERT 400

Query: 104 M-------------TSDEEEDEHTSSACKLKS--YSEFSCRYLARQHARLITRPGVKMIV 148
                         TS +  D   + A   K+   S    ++   Q+A  I RP VK+  
Sbjct: 401 RGRTVKTDKTNWKDTSKQPLDPQDTGAAAKKTCCISISLTKWAKNQYAPFIMRPSVKVTS 460

Query: 149 VFGFIGVLIASV 160
           +   I V++ASV
Sbjct: 461 MLALIAVILASV 472

Source: Biston betularia

Species: Biston betularia

Genus: Biston

Family: Geometridae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015824|ref|XP_002428547.1| patched 1, putative [Pediculus humanus corporis] gi|212513181|gb|EEB15809.1| patched 1, putative [Pediculus humanus corporis]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 64/84 (76%), Gaps = 5/84 (5%)

Query: 1   MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
           MF +T T+A+  ++   D     E TG+VL+KTGLS++++S+C    FF+A+LIPIPALR
Sbjct: 508 MFHLTHTYAESDNEGNID-----EQTGLVLKKTGLSVLMTSLCIMCTFFAAALIPIPALR 562

Query: 61  VFNLQLAILILFNMFVLLLVYPAI 84
           VF+LQ A+L+LFN+  +LLV+PAI
Sbjct: 563 VFSLQAAVLVLFNIGAMLLVFPAI 586

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|4883640|gb|AAD31595.1|AF117898_1 putative hedgehog receptor [Junonia coenia]

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 96/190 (50%), Gaps = 38/190 (20%)

Query: 1   MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
           MFL+T T+ +     Q   V   E TG+VL+K+GLS++L+S+C  +AF +A+L+PIPA R
Sbjct: 508 MFLLTHTYVE-----QAGDVPREERTGLVLKKSGLSVLLASLCNVMAFLAAALLPIPAFR 562

Query: 61  VFNLQLAILILFNMFVLLLVYPA---------------IECWVGSAAPKDQSLLGEDLMT 105
           VF LQ AIL+LFN+  +LLV+PA               + C +   +P  +  + E   T
Sbjct: 563 VFCLQAAILLLFNLGSILLVFPAMISLDLRRRSAARADLLCCLMPESPLPKKKIPERAKT 622

Query: 106 S---------------DEEEDEHTSSACKLKSYSEFSCRYLARQHARLITRPGVKMIVVF 150
                           D +  E+ +  C L   S    ++   Q+A  I RP VK+  + 
Sbjct: 623 RKNDKTHRIDTTRQPLDPDVSENVTKTCCL---SVSLTKWAKNQYAPFIMRPAVKVTSML 679

Query: 151 GFIGVLIASV 160
             I V++ SV
Sbjct: 680 ALIAVILTSV 689

Source: Junonia coenia

Species: Junonia coenia

Genus: Junonia

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|309253981|gb|ADO60879.1| patched [Bicyclus anynana]

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 97/189 (51%), Gaps = 34/189 (17%)

Query: 1   MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
           MFL+T T+ +     Q   V   E TG+VL+K+GLS++L+S+C  +AF +A+L+PIPA R
Sbjct: 286 MFLLTHTYVE-----QAGDVPREERTGLVLKKSGLSVLLASLCNVMAFLAAALLPIPAFR 340

Query: 61  VFNLQLAILILFNMFVLLLVYPA---------------IECWVGSAAPKDQSLLGEDLMT 105
           VF LQ AIL+LFN+  +LLV+PA               + C +   +P  +  + E   +
Sbjct: 341 VFCLQAAILLLFNLGSMLLVFPAMISLDLRRISAARADLLCCLMPESPLPKKKIPERAKS 400

Query: 106 SDEEEDEH--------------TSSACKLKSYSEFSCRYLARQHARLITRPGVKMIVVFG 151
              + D++              T    K    S    +++  Q+A  I RP VK+  +  
Sbjct: 401 RSGKTDKNNRLDTTRQPLDPDVTGEQPKACCLSVSLTKWVKNQYAPFIMRPAVKVTSMLA 460

Query: 152 FIGVLIASV 160
            I V++ASV
Sbjct: 461 LIVVILASV 469

Source: Bicyclus anynana

Species: Bicyclus anynana

Genus: Bicyclus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191579|gb|EFN75077.1| Protein patched [Harpegnathos saltator]

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 62/84 (73%), Gaps = 4/84 (4%)

Query: 1   MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
           MFL+T T+A+ +     + V   E TG+VL++TGLS++L+ +    AFF+A+LIPIPALR
Sbjct: 395 MFLLTHTYAELS----VNEVPSGEQTGVVLKRTGLSVLLTGLSNVSAFFAAALIPIPALR 450

Query: 61  VFNLQLAILILFNMFVLLLVYPAI 84
           VF LQ  IL+LFN+  +LLV+PA+
Sbjct: 451 VFCLQAGILLLFNLAAMLLVFPAM 474

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011471|ref|XP_003689826.1| PREDICTED: LOW QUALITY PROTEIN: protein patched-like [Apis florea]

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 62/84 (73%), Gaps = 4/84 (4%)

Query: 1   MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
           MFL+T T+A+ +     + V   E TG+VL++TGLS++L+ +    AFF+A++IPIPALR
Sbjct: 529 MFLLTHTYAELS----VNEVPSGEQTGVVLKRTGLSVLLAGISNVSAFFAAAIIPIPALR 584

Query: 61  VFNLQLAILILFNMFVLLLVYPAI 84
           VF LQ  IL+LFN+  +LLV+PA+
Sbjct: 585 VFCLQAGILLLFNLAAMLLVFPAM 608

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443694342|gb|ELT95505.1| hypothetical protein CAPTEDRAFT_226628 [Capitella teleta]

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 62/84 (73%), Gaps = 4/84 (4%)

Query: 1   MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
           MFL+  TFA+++ K+    +  +E TG VLR+ G+S++L+SV    AFF A+++PIPALR
Sbjct: 521 MFLVAHTFAEHSGKD----IPYHEQTGEVLRRVGVSVVLTSVSNMCAFFLAAIVPIPALR 576

Query: 61  VFNLQLAILILFNMFVLLLVYPAI 84
            F LQ+ +L++FN+  L++V+PA+
Sbjct: 577 AFCLQVGVLVMFNLVTLVIVFPAV 600

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
UNIPROTKB|Q13635	1447	PTCH1 "Protein patched homolog	0.5	0.055	0.428	2.4e-15
UNIPROTKB|F1PNE0	1449	PTCH1 "Uncharacterized protein	0.5	0.055	0.428	2.4e-15
UNIPROTKB|I3LVF2	1453	PTCH1 "Uncharacterized protein	0.5	0.055	0.428	2.4e-15
UNIPROTKB|F1NYG9	1303	PTCH1 "Protein patched homolog	0.5	0.062	0.428	3e-15
UNIPROTKB|Q90693	1442	PTCH1 "Protein patched homolog	0.5	0.056	0.428	3.9e-15
UNIPROTKB|Q6UY90	1434	Ptch1 "Protein Ptch1" [Rattus	0.5	0.056	0.428	4.8e-15
MGI|MGI:105373	1434	Ptch1 "patched homolog 1" [Mus	0.5	0.056	0.428	9.9e-15
ZFIN|ZDB-GENE-980526-44	1442	ptch2 "patched 2" [Danio rerio	0.487	0.054	0.452	9.9e-15
ZFIN|ZDB-GENE-980526-196	1475	ptch1 "patched 1" [Danio rerio	0.5	0.054	0.428	2.2e-14
UNIPROTKB|H9L1J3	199	H9L1J3 "Uncharacterized protei	0.487	0.396	0.452	2.3e-14

UNIPROTKB|Q13635 PTCH1 "Protein patched homolog 1" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
 Identities = 36/84 (42%), Positives = 59/84 (70%)

Query:     1 MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
             +FL+   F++ T +N+   +   + TG  L++TG S+ L+S+    AFF A+LIPIPALR
Sbjct:   515 VFLLAHAFSE-TGQNK--RIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALR 571

Query:    61 VFNLQLAILILFNMFVLLLVYPAI 84
              F+LQ A++++FN  ++LL++PAI
Sbjct:   572 AFSLQAAVVVVFNFAMVLLIFPAI 595

GO:0008158 "hedgehog receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0008544 "epidermis development" evidence=IEA

GO:0010157 "response to chlorate" evidence=IEA

GO:0021904 "dorsal/ventral neural tube patterning" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0035137 "hindlimb morphogenesis" evidence=IEA

GO:0042593 "glucose homeostasis" evidence=IEA

GO:0043616 "keratinocyte proliferation" evidence=IEA

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IEA

GO:0051782 "negative regulation of cell division" evidence=IEA

GO:0060603 "mammary gland duct morphogenesis" evidence=IEA

GO:0060644 "mammary gland epithelial cell differentiation" evidence=IEA

GO:0061005 "cell differentiation involved in kidney development" evidence=IEA

GO:0072203 "cell proliferation involved in metanephros development" evidence=IEA

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0003007 "heart morphogenesis" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEP;ISS

GO:0009887 "organ morphogenesis" evidence=ISS

GO:0009953 "dorsal/ventral pattern formation" evidence=ISS

GO:0016485 "protein processing" evidence=ISS

GO:0030326 "embryonic limb morphogenesis" evidence=ISS

GO:0040015 "negative regulation of multicellular organism growth" evidence=ISS

GO:0008589 "regulation of smoothened signaling pathway" evidence=ISS

GO:0072001 "renal system development" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005113 "patched binding" evidence=IPI

GO:0097108 "hedgehog family protein binding" evidence=IPI

GO:0005119 "smoothened binding" evidence=IPI

GO:0030332 "cyclin binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0045668 "negative regulation of osteoblast differentiation" evidence=IMP

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=IMP

GO:0045879 "negative regulation of smoothened signaling pathway" evidence=ISS;TAS

GO:0071397 "cellular response to cholesterol" evidence=ISS;IMP

GO:0010875 "positive regulation of cholesterol efflux" evidence=IDA

GO:0015485 "cholesterol binding" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0072661 "protein targeting to plasma membrane" evidence=IDA

GO:0005901 "caveola" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0021997 "neural plate axis specification" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0060037 "pharyngeal system development" evidence=IMP

GO:0021532 "neural tube patterning" evidence=IMP

GO:0061053 "somite development" evidence=IMP

GO:0035108 "limb morphogenesis" evidence=IMP

UNIPROTKB|F1PNE0 PTCH1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 180 (68.4 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
 Identities = 36/84 (42%), Positives = 59/84 (70%)

Query:     1 MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
             +FL+   F++ T +N+   +   + TG  L++TG S+ L+S+    AFF A+LIPIPALR
Sbjct:   513 VFLLAHAFSE-TGQNK--RIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALR 569

Query:    61 VFNLQLAILILFNMFVLLLVYPAI 84
              F+LQ A++++FN  ++LL++PAI
Sbjct:   570 AFSLQAAVVVVFNFAMVLLIFPAI 593

GO:0016021 "integral to membrane" evidence=IEA

GO:0008158 "hedgehog receptor activity" evidence=IEA

UNIPROTKB|I3LVF2 PTCH1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 180 (68.4 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
 Identities = 36/84 (42%), Positives = 59/84 (70%)

Query:     1 MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
             +FL+   F++ T +N+   +   + TG  L++TG S+ L+S+    AFF A+LIPIPALR
Sbjct:   518 VFLLAHAFSE-TGQNK--RIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALR 574

Query:    61 VFNLQLAILILFNMFVLLLVYPAI 84
              F+LQ A++++FN  ++LL++PAI
Sbjct:   575 AFSLQAAVVVVFNFAMVLLIFPAI 598

GO:0097108 "hedgehog family protein binding" evidence=IEA

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0072203 "cell proliferation involved in metanephros development" evidence=IEA

GO:0071397 "cellular response to cholesterol" evidence=IEA

GO:0061053 "somite development" evidence=IEA

GO:0061005 "cell differentiation involved in kidney development" evidence=IEA

GO:0060644 "mammary gland epithelial cell differentiation" evidence=IEA

GO:0060603 "mammary gland duct morphogenesis" evidence=IEA

GO:0060037 "pharyngeal system development" evidence=IEA

GO:0051782 "negative regulation of cell division" evidence=IEA

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0045668 "negative regulation of osteoblast differentiation" evidence=IEA

GO:0043616 "keratinocyte proliferation" evidence=IEA

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0042593 "glucose homeostasis" evidence=IEA

GO:0040015 "negative regulation of multicellular organism growth" evidence=IEA

GO:0035137 "hindlimb morphogenesis" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0030332 "cyclin binding" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0021997 "neural plate axis specification" evidence=IEA

GO:0021904 "dorsal/ventral neural tube patterning" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0015485 "cholesterol binding" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0010157 "response to chlorate" evidence=IEA

GO:0008589 "regulation of smoothened signaling pathway" evidence=IEA

GO:0008544 "epidermis development" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0005901 "caveola" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005119 "smoothened binding" evidence=IEA

GO:0005113 "patched binding" evidence=IEA

GO:0003007 "heart morphogenesis" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008158 "hedgehog receptor activity" evidence=IEA

UNIPROTKB|F1NYG9 PTCH1 "Protein patched homolog 1" [Gallus gallus (taxid:9031)]

 Score = 180 (68.4 bits), Expect = 3.0e-15, Sum P(2) = 3.0e-15
 Identities = 36/84 (42%), Positives = 59/84 (70%)

Query:     1 MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
             +FL+   F++ T +N+   +   + TG  L++TG S+ L+S+    AFF A+LIPIPALR
Sbjct:   384 VFLLAHAFSE-TGQNK--RIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALR 440

Query:    61 VFNLQLAILILFNMFVLLLVYPAI 84
              F+LQ A++++FN  ++LL++PAI
Sbjct:   441 AFSLQAAVVVVFNFAMVLLIFPAI 464

GO:0008158 "hedgehog receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0003007 "heart morphogenesis" evidence=IEA

GO:0005113 "patched binding" evidence=IEA

GO:0005119 "smoothened binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005901 "caveola" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0008544 "epidermis development" evidence=IEA

GO:0008589 "regulation of smoothened signaling pathway" evidence=IEA

GO:0010157 "response to chlorate" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0015485 "cholesterol binding" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0021904 "dorsal/ventral neural tube patterning" evidence=IEA

GO:0021997 "neural plate axis specification" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0030332 "cyclin binding" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0035137 "hindlimb morphogenesis" evidence=IEA

GO:0040015 "negative regulation of multicellular organism growth" evidence=IEA

GO:0042593 "glucose homeostasis" evidence=IEA

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043616 "keratinocyte proliferation" evidence=IEA

GO:0045668 "negative regulation of osteoblast differentiation" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IEA

GO:0051782 "negative regulation of cell division" evidence=IEA

GO:0060037 "pharyngeal system development" evidence=IEA

GO:0060603 "mammary gland duct morphogenesis" evidence=IEA

GO:0060644 "mammary gland epithelial cell differentiation" evidence=IEA

GO:0061005 "cell differentiation involved in kidney development" evidence=IEA

GO:0061053 "somite development" evidence=IEA

GO:0071397 "cellular response to cholesterol" evidence=IEA

GO:0072203 "cell proliferation involved in metanephros development" evidence=IEA

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0097108 "hedgehog family protein binding" evidence=IEA

UNIPROTKB|Q90693 PTCH1 "Protein patched homolog 1" [Gallus gallus (taxid:9031)]

 Score = 180 (68.4 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
 Identities = 36/84 (42%), Positives = 59/84 (70%)

Query:     1 MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
             +FL+   F++ T +N+   +   + TG  L++TG S+ L+S+    AFF A+LIPIPALR
Sbjct:   515 VFLLAHAFSE-TGQNK--RIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALR 571

Query:    61 VFNLQLAILILFNMFVLLLVYPAI 84
              F+LQ A++++FN  ++LL++PAI
Sbjct:   572 AFSLQAAVVVVFNFAMVLLIFPAI 595

GO:0008158 "hedgehog receptor activity" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=NAS

GO:0005887 "integral to plasma membrane" evidence=NAS

UNIPROTKB|Q6UY90 Ptch1 "Protein Ptch1" [Rattus norvegicus (taxid:10116)]

 Score = 180 (68.4 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
 Identities = 36/84 (42%), Positives = 59/84 (70%)

Query:     1 MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
             +FL+   F++ T +N+   +   + TG  L++TG S+ L+S+    AFF A+LIPIPALR
Sbjct:   501 VFLLAHAFSE-TGQNK--RIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALR 557

Query:    61 VFNLQLAILILFNMFVLLLVYPAI 84
              F+LQ A++++FN  ++LL++PAI
Sbjct:   558 AFSLQAAVVVVFNFAMVLLIFPAI 581

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0003007 "heart morphogenesis" evidence=IEA

GO:0005113 "patched binding" evidence=IEA

GO:0005119 "smoothened binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005901 "caveola" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=ISS

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0008158 "hedgehog receptor activity" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0008544 "epidermis development" evidence=IEA

GO:0008589 "regulation of smoothened signaling pathway" evidence=ISS

GO:0009887 "organ morphogenesis" evidence=ISS

GO:0009953 "dorsal/ventral pattern formation" evidence=ISS

GO:0010157 "response to chlorate" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0015485 "cholesterol binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016485 "protein processing" evidence=ISS

GO:0021904 "dorsal/ventral neural tube patterning" evidence=IEA

GO:0021997 "neural plate axis specification" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=ISS

GO:0030332 "cyclin binding" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0035137 "hindlimb morphogenesis" evidence=IEA

GO:0040015 "negative regulation of multicellular organism growth" evidence=ISS

GO:0042593 "glucose homeostasis" evidence=IEA

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043616 "keratinocyte proliferation" evidence=IEA

GO:0045668 "negative regulation of osteoblast differentiation" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IEA

GO:0051782 "negative regulation of cell division" evidence=IEA

GO:0060037 "pharyngeal system development" evidence=IEA

GO:0060603 "mammary gland duct morphogenesis" evidence=IEA

GO:0060644 "mammary gland epithelial cell differentiation" evidence=IEA

GO:0061005 "cell differentiation involved in kidney development" evidence=IEA

GO:0061053 "somite development" evidence=IEA

GO:0071397 "cellular response to cholesterol" evidence=IEA

GO:0072203 "cell proliferation involved in metanephros development" evidence=IEA

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0097108 "hedgehog family protein binding" evidence=IEA

MGI|MGI:105373 Ptch1 "patched homolog 1" [Mus musculus (taxid:10090)]

 Score = 180 (68.4 bits), Expect = 9.9e-15, Sum P(2) = 9.9e-15
 Identities = 36/84 (42%), Positives = 59/84 (70%)

Query:     1 MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
             +FL+   F++ T +N+   +   + TG  L++TG S+ L+S+    AFF A+LIPIPALR
Sbjct:   501 VFLLAHAFSE-TGQNK--RIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALR 557

Query:    61 VFNLQLAILILFNMFVLLLVYPAI 84
              F+LQ A++++FN  ++LL++PAI
Sbjct:   558 AFSLQAAVVVVFNFAMVLLIFPAI 581

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IMP

GO:0001841 "neural tube formation" evidence=IDA

GO:0001843 "neural tube closure" evidence=IMP

GO:0003007 "heart morphogenesis" evidence=IMP

GO:0005113 "patched binding" evidence=IDA

GO:0005119 "smoothened binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=TAS

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0005901 "caveola" evidence=ISO

GO:0007165 "signal transduction" evidence=IDA;TAS

GO:0007224 "smoothened signaling pathway" evidence=IGI;IDA

GO:0007346 "regulation of mitotic cell cycle" evidence=IMP

GO:0007389 "pattern specification process" evidence=IMP

GO:0007420 "brain development" evidence=IMP

GO:0008158 "hedgehog receptor activity" evidence=TAS

GO:0008201 "heparin binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=NAS

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0008544 "epidermis development" evidence=IMP

GO:0008589 "regulation of smoothened signaling pathway" evidence=IGI;IMP

GO:0009887 "organ morphogenesis" evidence=IMP

GO:0009953 "dorsal/ventral pattern formation" evidence=IGI

GO:0010157 "response to chlorate" evidence=IDA

GO:0010875 "positive regulation of cholesterol efflux" evidence=ISO

GO:0014069 "postsynaptic density" evidence=ISO

GO:0015485 "cholesterol binding" evidence=ISO;TAS

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016485 "protein processing" evidence=IMP

GO:0021522 "spinal cord motor neuron differentiation" evidence=IGI

GO:0021532 "neural tube patterning" evidence=ISO

GO:0021904 "dorsal/ventral neural tube patterning" evidence=IMP

GO:0021997 "neural plate axis specification" evidence=IMP

GO:0030326 "embryonic limb morphogenesis" evidence=IGI;IMP

GO:0030332 "cyclin binding" evidence=ISO;IPI

GO:0030496 "midbody" evidence=IDA

GO:0030879 "mammary gland development" evidence=IMP

GO:0032403 "protein complex binding" evidence=IDA

GO:0032880 "regulation of protein localization" evidence=IDA;IMP

GO:0035108 "limb morphogenesis" evidence=ISO

GO:0035137 "hindlimb morphogenesis" evidence=IMP

GO:0040008 "regulation of growth" evidence=IMP

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0042593 "glucose homeostasis" evidence=IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0043616 "keratinocyte proliferation" evidence=IMP

GO:0044294 "dendritic growth cone" evidence=ISO

GO:0044295 "axonal growth cone" evidence=ISO

GO:0045668 "negative regulation of osteoblast differentiation" evidence=ISO

GO:0045879 "negative regulation of smoothened signaling pathway" evidence=IGI;NAS;IMP

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IMP

GO:0051782 "negative regulation of cell division" evidence=IMP

GO:0060037 "pharyngeal system development" evidence=ISO

GO:0060603 "mammary gland duct morphogenesis" evidence=IMP

GO:0060644 "mammary gland epithelial cell differentiation" evidence=IMP

GO:0060831 "smoothened signaling pathway involved in dorsal/ventral neural tube patterning" evidence=IMP

GO:0061005 "cell differentiation involved in kidney development" evidence=IGI

GO:0061053 "somite development" evidence=ISO;IMP

GO:0071397 "cellular response to cholesterol" evidence=ISO

GO:0072203 "cell proliferation involved in metanephros development" evidence=IMP

GO:0072372 "primary cilium" evidence=IDA

GO:0072661 "protein targeting to plasma membrane" evidence=ISO

GO:0097108 "hedgehog family protein binding" evidence=ISO

ZFIN|ZDB-GENE-980526-44 ptch2 "patched 2" [Danio rerio (taxid:7955)]

 Score = 185 (70.2 bits), Expect = 9.9e-15, Sum P(2) = 9.9e-15
 Identities = 38/84 (45%), Positives = 58/84 (69%)

Query:     1 MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
             MFL+  +F + T  N    +   E TG  LR+TG S+ L+S+   +AFF A+L+PIPALR
Sbjct:   498 MFLLAHSFTE-TRSN----IPFKERTGDCLRRTGTSVALTSINNMIAFFMAALVPIPALR 552

Query:    61 VFNLQLAILILFNMFVLLLVYPAI 84
              F+LQ A++++FN  ++LL++PAI
Sbjct:   553 AFSLQAAVVVVFNFAMVLLIFPAI 576

GO:0008158 "hedgehog receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0048635 "negative regulation of muscle organ development" evidence=IGI

GO:0010002 "cardioblast differentiation" evidence=IGI

GO:0001649 "osteoblast differentiation" evidence=IMP

GO:0031290 "retinal ganglion cell axon guidance" evidence=IMP

GO:0009954 "proximal/distal pattern formation" evidence=IMP

GO:0043010 "camera-type eye development" evidence=IMP

GO:0007224 "smoothened signaling pathway" evidence=IMP

ZFIN|ZDB-GENE-980526-196 ptch1 "patched 1" [Danio rerio (taxid:7955)]

 Score = 180 (68.4 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
 Identities = 36/84 (42%), Positives = 59/84 (70%)

Query:     1 MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
             +FL+   F++ T +N+   +   + TG  L++TG S+ L+S+    AFF A+LIPIPALR
Sbjct:   504 VFLLAHAFSE-TGQNK--RIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALR 560

Query:    61 VFNLQLAILILFNMFVLLLVYPAI 84
              F+LQ A++++FN  ++LL++PAI
Sbjct:   561 AFSLQAAVVVVFNFAMVLLIFPAI 584

GO:0016020 "membrane" evidence=IEA

GO:0008158 "hedgehog receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0048635 "negative regulation of muscle organ development" evidence=IGI

GO:0010002 "cardioblast differentiation" evidence=IGI

GO:0060042 "retina morphogenesis in camera-type eye" evidence=IMP

GO:0001957 "intramembranous ossification" evidence=IMP

GO:0001649 "osteoblast differentiation" evidence=IMP

GO:0060041 "retina development in camera-type eye" evidence=IMP

GO:0045879 "negative regulation of smoothened signaling pathway" evidence=IMP

UNIPROTKB|H9L1J3 H9L1J3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 38/84 (45%), Positives = 58/84 (69%)

Query:     1 MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
             MFL+   F + TS++    +   E TG  LR+TG S+ L+SV   +AFF A+L+PIPALR
Sbjct:    69 MFLLAHAFTE-TSQH----IPFKERTGECLRRTGTSVALTSVSNMIAFFMAALVPIPALR 123

Query:    61 VFNLQLAILILFNMFVLLLVYPAI 84
              F+LQ A++++FN  ++L ++PAI
Sbjct:   124 AFSLQAAVVVVFNFAMVLFIFPAI 147

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	162
TIGR00918	1145	TIGR00918, 2A060602, The Eukaryotic (Putative) Ste	1e-17
pfam12349	153	pfam12349, Sterol-sensing, Sterol-sensing domain o	4e-09
TIGR00917	1204	TIGR00917, 2A060601, Niemann-Pick C type protein f	4e-08
TIGR00918	1145	TIGR00918, 2A060602, The Eukaryotic (Putative) Ste	8e-04
TIGR00921	719	TIGR00921, 2A067, The (Largely Archaeal Putative)	0.001
COG2409	937	COG2409, COG2409, Predicted drug exporters of the	0.003

>gnl|CDD|233185 TIGR00918, 2A060602, The Eukaryotic (Putative) Sterol Transporter (EST) Family

 Score = 78.8 bits (194), Expect = 1e-17
 Identities = 39/84 (46%), Positives = 58/84 (69%), Gaps = 5/84 (5%)

Query: 1   MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
           +FL+   F++ T +N    +   E TG  L++TG S++L+S+    AFF A+LIPIPALR
Sbjct: 475 VFLLAHAFSE-TGQN----IPFEERTGECLKRTGASVVLTSISNVTAFFMAALIPIPALR 529

Query: 61  VFNLQLAILILFNMFVLLLVYPAI 84
            F+LQ AI+++FN   +LLV+PAI
Sbjct: 530 AFSLQAAIVVVFNFAAVLLVFPAI 553

Length = 1145

>gnl|CDD|192997 pfam12349, Sterol-sensing, Sterol-sensing domain of SREBP cleavage-activation

 Score = 52.2 bits (126), Expect = 4e-09
 Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 5/84 (5%)

Query: 1   MFLITKTFAKYTSKNQFDSVKLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALR 60
           MFL+     + T ++     ++ E     L + G SI L+S+ + +AF   +L P+PA++
Sbjct: 54  MFLLVHAV-QRTPRSLDVEERIAEA----LGEVGPSITLTSLTELLAFLIGALTPMPAVQ 108

Query: 61  VFNLQLAILILFNMFVLLLVYPAI 84
            F L  A+ +LF+  + +  + A+
Sbjct: 109 EFCLFAAVAVLFDFLLQITFFVAV 132

Sterol regulatory element-binding proteins (SREBPs) are membrane-bound transcription factors that promote lipid synthesis in animal cells. They are embedded in the membranes of the endoplasmic reticulum (ER) in a helical hairpin orientation and are released from the ER by a two-step proteolytic process. Proteolysis begins when the SREBPs are cleaved at Site-1, which is located at a leucine residue in the middle of the hydrophobic loop in the lumen of the ER. Upon proteolytic processing SREBP can activate the expression of genes involved in cholesterol biosynthesis and uptake. SCAP stimulates cleavage of SREBPs via fusion of the their two C-termini. This domain is the transmembrane region that traverses the membrane eight times and is the sterol-sensing domain of the cleavage protein. WD40 domains are found towards the C-terminus. Length = 153

>gnl|CDD|233184 TIGR00917, 2A060601, Niemann-Pick C type protein family

 Score = 51.0 bits (122), Expect = 4e-08
 Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 25/146 (17%)

Query: 27  GIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIEC 86
           G  L + G SI L+S+ +S+AFF  +L  +PA+R F+L  A L +F  F+L      I  
Sbjct: 685 GRALGEVGPSITLASLSESLAFFLGALSKMPAVRAFSL-FAGLAVFIDFLL-----QITA 738

Query: 87  WVGSAAPKDQSLLGEDLMTSDE-----------EEDEHTSSACKLKSYSEFSCRYLARQH 135
           +V        +LL  D   +++            +   ++     +       R+    +
Sbjct: 739 FV--------ALLVLDFKRTEDNRVDCFPCIKGSKSSISAEKGSGQRKEGLLTRFFKEVY 790

Query: 136 ARLITRPGVKMIVVFGFIGVLIASVS 161
           A  +    VK++V+  F G+L+  ++
Sbjct: 791 APFLLHWIVKIVVIAFFFGLLMFGIA 816

The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis [Transport and binding proteins, Other]. Length = 1204

>gnl|CDD|233185 TIGR00918, 2A060602, The Eukaryotic (Putative) Sterol Transporter (EST) Family

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 110 EDEHTSSACKLKSYSEFSCRYLARQH-ARLITRPGVKMIVVFGFIGVLIASV 160
           + E + +AC     + ++    A +H A  + +   K++V+F F+ +L  S+
Sbjct: 653 QFEDSKAACLSLPCARWTLATFAEKHYAPFLLQSWAKVVVIFLFLALLGLSL 704

Length = 1145

>gnl|CDD|233187 TIGR00921, 2A067, The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 30  LRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAI 84
           + +TG  I+ S +  +  F S  L   P +R F L   I +L ++   L+V+PA+
Sbjct: 662 MERTGPGILFSGLTTAGGFLSLLLSHFPIMRNFGLVQGIGVLSSLTAALVVFPAL 716

Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea [Transport and binding proteins, Unknown substrate]. Length = 719

>gnl|CDD|225272 COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 13/58 (22%), Positives = 25/58 (43%)

Query: 27  GIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAI 84
           G   R  G ++  S +  ++A    S   +P L+   +  AI +   +   L + PA+
Sbjct: 282 GTAYRTAGKTVAFSGLTVAIALLGLSFARLPFLKTLGIAAAIGVAVAVLAALTLLPAL 339

Length = 937

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
3aqp_A	741	Probable secdf protein-export membrane protein; tr	97.74
3aqp_A	741	Probable secdf protein-export membrane protein; tr	97.1
4dx5_A	1057	Acriflavine resistance protein B; multidrug efflux	96.81
3ne5_A	1054	Cation efflux system protein CUSA; transmembrane h	96.13
2v50_A	1052	Multidrug resistance protein MEXB; DDM, RND, membr	95.92
4dx5_A	1057	Acriflavine resistance protein B; multidrug efflux	95.8
2v50_A	1052	Multidrug resistance protein MEXB; DDM, RND, membr	95.56
3ne5_A	1054	Cation efflux system protein CUSA; transmembrane h	95.06

>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A

Probab=97.74  E-value=8e-05  Score=68.16  Aligned_cols=71  Identities=18%  Similarity=0.174  Sum_probs=67.6

Q ss_pred             chhHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy14635         21 KLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIECWVGSA   91 (162)
Q Consensus        21 ~~~~ri~~~l~~~gpsi~~ts~t~~~aF~~g~~~~~Pav~~F~~~a~~av~~~f~~q~t~f~a~l~l~~rR   91 (162)
                      +.++.+.+++++++.+|+.|++|++++|+.-.+.+.|.+|.|++..+++++++++..+++.|+++.+-.+|
T Consensus       358 ~~~~Ai~~~~~~~~~~Il~s~lTt~i~f~~L~~~~~~~~~~fa~~~~~gi~~s~~~al~~~P~l~~~~~~~  428 (741)
T 3aqp_A          358 KLRQAIPEGFRHSTLTIMDVNIAHLLAAAALYQYATGPVRGFAVILAIGVVASVFSNLVFSRHLLERLADR  428 (741)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            67889999999999999999999999999999999999999999999999999999999999999886654

>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A

Probab=97.10  E-value=0.0012  Score=60.44  Aligned_cols=72  Identities=14%  Similarity=0.157  Sum_probs=67.0

Q ss_pred             chhHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q psy14635         21 KLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPALRVFNLQLAILILFNMFVLLLVYPAIECWVGSAA   92 (162)
Q Consensus        21 ~~~~ri~~~l~~~gpsi~~ts~t~~~aF~~g~~~~~Pav~~F~~~a~~av~~~f~~q~t~f~a~l~l~~rR~   92 (162)
                      +.++.+.+++++.+..++.|++|++++|+.-.++..+.++.|++-.++++++..+..+++.|+++.+-++|+
T Consensus       656 ~~~eav~~a~~~~~~~il~Tsltt~~g~~~L~~~g~~~~~~~g~~~~~Gl~~~~~~sl~l~Pal~~~~~~~~  727 (741)
T 3aqp_A          656 PYAELVNRSINQTLSRTVMTSLTTLLPILALLFLGGSVLRDFALAIFVGIFVGTYSSIYVVSALVVAWKNRR  727 (741)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            688999999999999999999999999999999999999999999999999999999999999998866543

>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...

Probab=96.81  E-value=0.0093  Score=56.16  Aligned_cols=72  Identities=14%  Similarity=0.187  Sum_probs=66.4

Q ss_pred             chhHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q psy14635         21 KLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIP---IPALRVFNLQLAILILFNMFVLLLVYPAIECWVGSAA   92 (162)
Q Consensus        21 ~~~~ri~~~l~~~gpsi~~ts~t~~~aF~~g~~~~---~Pav~~F~~~a~~av~~~f~~q~t~f~a~l~l~~rR~   92 (162)
                      +..+.+.++.++.+.+|+.|++|++++|+.=.+.+   -+..+.|++..++++++.++..+|+.|+++.+-.++.
T Consensus       426 ~~~~A~~~a~~~~~~pi~~t~ltt~~~f~pl~~~~g~~~~~~~~~a~~~~~gl~~s~~~~l~~~P~l~~~~~~~~  500 (1057)
T 4dx5_A          426 PPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPI  500 (1057)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            67889999999999999999999999999988887   6778999999999999999999999999999877654

>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A

Probab=96.13  E-value=0.011  Score=55.64  Aligned_cols=71  Identities=7%  Similarity=0.046  Sum_probs=62.5

Q ss_pred             chhHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy14635         21 KLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIP---IPALRVFNLQLAILILFNMFVLLLVYPAIECWVGSA   91 (162)
Q Consensus        21 ~~~~ri~~~l~~~gpsi~~ts~t~~~aF~~g~~~~---~Pav~~F~~~a~~av~~~f~~q~t~f~a~l~l~~rR   91 (162)
                      +..+-+.++.++.++.++.|++|++++|+.=.+.+   -+..+.|++-.++++++.++..+|+.|+++.+-.++
T Consensus       441 ~~~~a~~~a~~~~~~~i~~s~ltt~~~f~pl~~~~g~~~~~~~~~~~~~~~gl~~s~~~~l~~~P~l~~~~~~~  514 (1054)
T 3ne5_A          441 TRWQVITDASVEVGPALFISLLIITLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRG  514 (1054)
T ss_dssp             HHHHHHHTTTTTHHHHHHHHHHHHHHTTGGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHC---
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            56777888999999999999999999999888877   677899999999999999999999999999986654

>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}

Probab=95.92  E-value=0.007  Score=57.04  Aligned_cols=71  Identities=13%  Similarity=0.179  Sum_probs=65.3

Q ss_pred             chhHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy14635         21 KLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPI---PALRVFNLQLAILILFNMFVLLLVYPAIECWVGSA   91 (162)
Q Consensus        21 ~~~~ri~~~l~~~gpsi~~ts~t~~~aF~~g~~~~~---Pav~~F~~~a~~av~~~f~~q~t~f~a~l~l~~rR   91 (162)
                      +..+.+.++.++.+.+|++|++|++++|+.-.+++.   +..+.|++..++++++.++..+|+.|+++++-.++
T Consensus       426 ~~~~A~~~a~~~~~~pil~t~ltt~~~f~pl~~~~~~~g~~~~~~~~~~~~gl~~s~~~~l~l~P~l~~~~~~~  499 (1052)
T 2v50_A          426 SPREAARKSMGQIQGALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVIVALILTPALCATMLKP  499 (1052)
T ss_dssp             CHHHHHHHHHHTTSSTTHHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            678889999999999999999999999999999988   48899999999999999999999999999875543

>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...

Probab=95.80  E-value=0.02  Score=53.85  Aligned_cols=72  Identities=13%  Similarity=0.032  Sum_probs=66.1

Q ss_pred             chhHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q psy14635         21 KLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIP---IPALRVFNLQLAILILFNMFVLLLVYPAIECWVGSAA   92 (162)
Q Consensus        21 ~~~~ri~~~l~~~gpsi~~ts~t~~~aF~~g~~~~---~Pav~~F~~~a~~av~~~f~~q~t~f~a~l~l~~rR~   92 (162)
                      +.++-+.++.++.+..|++|++|++++|+.=.+.+   .|.++.|++-.+.++++.+++.+++-|+++.+-+++.
T Consensus       959 ~~~~Ai~~a~~~~~rpil~t~ltt~~g~~pl~~~~g~g~~~~~~~g~~~~~Gl~~s~~~tl~~~P~l~~~~~~~~ 1033 (1057)
T 4dx5_A          959 GLIEATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRRRF 1033 (1057)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCchhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            77889999999999999999999999999988885   8999999999999999999999999999998866543

>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}

Probab=95.56  E-value=0.024  Score=53.44  Aligned_cols=71  Identities=8%  Similarity=0.006  Sum_probs=62.4

Q ss_pred             chhHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy14635         21 KLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPI---PALRVFNLQLAILILFNMFVLLLVYPAIECWVGSA   91 (162)
Q Consensus        21 ~~~~ri~~~l~~~gpsi~~ts~t~~~aF~~g~~~~~---Pav~~F~~~a~~av~~~f~~q~t~f~a~l~l~~rR   91 (162)
                      +.++.+.++.++.+..|++|++|++++|+.-.+++-   +..+.|++-.+.++++..+..+++.|+++.+-+++
T Consensus       957 ~~~~Ai~~a~~~~~rpil~t~~tt~~g~~pl~~~~~~g~~~~~~~~~~~~~Gl~~s~~~~l~~~P~l~~~~~~~ 1030 (1052)
T 2v50_A          957 GIVEAAIEACRMRLRPIVMTSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGMVTATVLAIFWVPLFYVAVSTL 1030 (1052)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHTCCSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred             CHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCChhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            678899999999999999999999999999888877   88999999999999999999999999999875543

>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A

Probab=95.06  E-value=0.05  Score=51.15  Aligned_cols=71  Identities=8%  Similarity=-0.069  Sum_probs=64.1

Q ss_pred             chhHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy14635         21 KLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIP---IPALRVFNLQLAILILFNMFVLLLVYPAIECWVGSA   91 (162)
Q Consensus        21 ~~~~ri~~~l~~~gpsi~~ts~t~~~aF~~g~~~~---~Pav~~F~~~a~~av~~~f~~q~t~f~a~l~l~~rR   91 (162)
                      +..+-+.++.++.+..|++|++|++++|+.=.+.+   .+..+.|++-.+.++++.++..+++-|+++.+-.+|
T Consensus       975 ~~~~Ai~~a~~~~~rpil~t~ltti~g~~pl~~~~g~g~~~~~~l~~~~~~Gl~~s~~~tl~v~P~l~~~~~~~ 1048 (1054)
T 3ne5_A          975 KLDEALYHGAVLRVRPKAMTVAVIIAGLLPILWGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLH 1048 (1054)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHTTHHHHHHHHHHHHHHHHHTHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhcCCChHHhccCHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56778888899999999999999999999988884   788999999999999999999999999999886544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	162
d1iwga7	199	Multidrug efflux transporter AcrB transmembrane do	97.66
d1iwga8	222	Multidrug efflux transporter AcrB transmembrane do	97.03

>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Multidrug efflux transporter AcrB transmembrane domain
superfamily: Multidrug efflux transporter AcrB transmembrane domain
family: Multidrug efflux transporter AcrB transmembrane domain
domain: Multidrug efflux transporter AcrB transmembrane domain
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=2.2e-05  Score=58.97  Aligned_cols=68  Identities=15%  Similarity=0.228  Sum_probs=62.7

Q ss_pred             chhHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCChhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14635         21 KLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIPA---LRVFNLQLAILILFNMFVLLLVYPAIECWV   88 (162)
Q Consensus        21 ~~~~ri~~~l~~~gpsi~~ts~t~~~aF~~g~~~~~Pa---v~~F~~~a~~av~~~f~~q~t~f~a~l~l~   88 (162)
                      +.+|.+.++.+++|.+++.|++|++.+|+.-.+++.+.   .+.|..-.+.++++.++..+|+.|+++++=
T Consensus       127 ~~~eAi~~a~~~~g~~i~~s~lTt~~~f~~l~~~~~~~~~~~~~~g~~i~~gv~~s~i~al~llPall~~~  197 (199)
T d1iwga7         127 PPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATM  197 (199)
T ss_dssp             CSHHHHHHGGGTHHHHHHHHHHHHHHHHTTTTCCCTTSHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHS
T ss_pred             CHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            67999999999999999999999999999998887654   789999999999999999999999999863

>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Multidrug efflux transporter AcrB transmembrane domain
superfamily: Multidrug efflux transporter AcrB transmembrane domain
family: Multidrug efflux transporter AcrB transmembrane domain
domain: Multidrug efflux transporter AcrB transmembrane domain
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00015  Score=55.19  Aligned_cols=74  Identities=12%  Similarity=0.042  Sum_probs=65.1

Q ss_pred             chhHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcc
Q psy14635         21 KLNECTGIVLRKTGLSIILSSVCKSVAFFSASLIPIP---ALRVFNLQLAILILFNMFVLLLVYPAIECWVGSAAPK   94 (162)
Q Consensus        21 ~~~~ri~~~l~~~gpsi~~ts~t~~~aF~~g~~~~~P---av~~F~~~a~~av~~~f~~q~t~f~a~l~l~~rR~~~   94 (162)
                      +.++.+.++.++.+.+|+.|++|++++|+.=.+.+-|   -.+.++.-.+.++++.++..+++.|+++.+-+||.++
T Consensus       145 ~~~~Ai~~a~~~~~~~i~~t~ltti~gf~pl~~~~~~g~~~~~~la~~v~~Gll~s~~~~l~~~Pal~~l~~r~~~r  221 (222)
T d1iwga8         145 GLIEATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRRRFSR  221 (222)
T ss_dssp             CTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHHHTTTTSSSSSSHHHHHHHTSC
T ss_pred             CHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            7889999999999999999999999999988877655   6677788888899999999999999999887776543