Psyllid ID: psy14676
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1827 | 2.2.26 [Sep-21-2011] | |||||||
| Q5R6L5 | 1230 | Cullin-associated NEDD8-d | yes | N/A | 0.210 | 0.312 | 0.588 | 1e-133 | |
| Q6ZQ38 | 1230 | Cullin-associated NEDD8-d | yes | N/A | 0.210 | 0.312 | 0.596 | 1e-128 | |
| Q86VP6 | 1230 | Cullin-associated NEDD8-d | yes | N/A | 0.210 | 0.312 | 0.591 | 1e-127 | |
| A7MBJ5 | 1230 | Cullin-associated NEDD8-d | yes | N/A | 0.210 | 0.312 | 0.591 | 1e-127 | |
| P97536 | 1230 | Cullin-associated NEDD8-d | yes | N/A | 0.210 | 0.312 | 0.591 | 1e-127 | |
| Q9R0L4 | 1273 | Cullin-associated NEDD8-d | no | N/A | 0.206 | 0.296 | 0.501 | 1e-103 | |
| O75155 | 1236 | Cullin-associated NEDD8-d | no | N/A | 0.203 | 0.300 | 0.504 | 1e-103 | |
| Q6ZQ73 | 1235 | Cullin-associated NEDD8-d | no | N/A | 0.206 | 0.305 | 0.493 | 1e-102 | |
| Q8L5Y6 | 1219 | Cullin-associated NEDD8-d | yes | N/A | 0.357 | 0.535 | 0.332 | 1e-86 | |
| Q86KD1 | 1238 | Cullin-associated NEDD8-d | yes | N/A | 0.215 | 0.318 | 0.367 | 2e-57 |
| >sp|Q5R6L5|CAND1_PONAB Cullin-associated NEDD8-dissociated protein 1 OS=Pongo abelii GN=CAND1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/394 (58%), Positives = 303/394 (76%), Gaps = 10/394 (2%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGSN--ALAANVCRRITGKLSTAIEKQEDVSVQLEA 58
M+SDKEQLRDISSIGLKTVI ELP S+ ALAANVC++ITG+L++AI KQEDVSVQLEA
Sbjct: 95 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEA 154
Query: 59 LDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKL 118
LDI++D+LSR G LL +FH ILT LLPQL+SPR AVRKRTI+AL HLVMSC ++ L
Sbjct: 155 LDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVGL 214
Query: 119 IDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREF 178
I+ LL L+ N S ST RTYIQC AAI RQAGHR E++E+++PL++K+ +DDELRE+
Sbjct: 215 IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREY 274
Query: 179 CLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEE 238
C+QA E+FV+RCPKE+ PH+ +I +CL Y+TYDPNYNY+DE+E E +
Sbjct: 275 CIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDE-------DENAMDADG 327
Query: 239 DGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKERE 298
+D+ D+EYSDD DMSWKVRRAAAKCL+A+++TR +++ + Y+ VSP LI+RFKERE
Sbjct: 328 GDDDDQGSDDEYSDDGDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKERE 387
Query: 299 ENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREK 358
ENVK+D+FHAY++LLK TR DP+ M+Q ++PL +L +QVP++VKAL Q++EK
Sbjct: 388 ENVKADVFHAYLSLLKQTRPVQSWL-CDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEK 446
Query: 359 SIRTRQDCLALLRELVQTLPGCLAPSLPALIPDV 392
S++TRQ C +L ELV LPG L +P L+P +
Sbjct: 447 SVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGI 480
|
Enhances transcription from various types of promoters. Regulatory protein that interferes with the assembly of the SCF (SKP1-CUL1-F-box protein) ubiquitin ligase complex and thereby down-regulates ubiquitination of target proteins. Prevents neddylation of CUL1 by physically blocking access to the neddylation site. Disrupts interactions between CUL1 and SKP1 and between CUL1 and F-box proteins. Pongo abelii (taxid: 9601) |
| >sp|Q6ZQ38|CAND1_MOUSE Cullin-associated NEDD8-dissociated protein 1 OS=Mus musculus GN=Cand1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 461 bits (1185), Expect = e-128, Method: Compositional matrix adjust.
Identities = 235/394 (59%), Positives = 304/394 (77%), Gaps = 10/394 (2%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGSN--ALAANVCRRITGKLSTAIEKQEDVSVQLEA 58
M+SDKEQLRDISSIGLKTVI ELP S+ ALAANVC++ITG+L++AI KQEDVSVQLEA
Sbjct: 95 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEA 154
Query: 59 LDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKL 118
LDI++D+LSR G LL +FH ILT LLPQL+SPR AVRKRTI+AL HLVMSC ++ L
Sbjct: 155 LDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL 214
Query: 119 IDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREF 178
I+ LL L+ N S ST RTYIQC AAI RQAGHR E++E+++PL++K+ +DDELRE+
Sbjct: 215 IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREY 274
Query: 179 CLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEE 238
C+QA E+FV+RCPKE+ PH+ +I +CL Y+TYDPNYNY+DE+E E +
Sbjct: 275 CIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDE-------DENAMDADG 327
Query: 239 DGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKERE 298
+D+ D+EYSDDDDMSWKVRRAAAKCL+A+++TR +++ + Y+ VSP LIARFKERE
Sbjct: 328 GDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALIARFKERE 387
Query: 299 ENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREK 358
ENVK+D+FHAY++LLK TR DP+ M+Q D+PL +L +QVP++VKAL Q++EK
Sbjct: 388 ENVKADVFHAYLSLLKQTRPVQSWL-CDPDAMEQGDTPLTMLQSQVPNIVKALHKQMKEK 446
Query: 359 SIRTRQDCLALLRELVQTLPGCLAPSLPALIPDV 392
S++TRQ C +L ELV LPG L +P L+P +
Sbjct: 447 SVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGI 480
|
Enhances transcription from various types of promoters. Regulatory protein that interferes with the assembly of the SCF (SKP1-CUL1-F-box protein) ubiquitin ligase complex and thereby down-regulates ubiquitination of target proteins. Prevents neddylation of CUL1 by physically blocking access to the neddylation site. Disrupts interactions between CUL1 and SKP1 and between CUL1 and F-box proteins. Mus musculus (taxid: 10090) |
| >sp|Q86VP6|CAND1_HUMAN Cullin-associated NEDD8-dissociated protein 1 OS=Homo sapiens GN=CAND1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust.
Identities = 233/394 (59%), Positives = 304/394 (77%), Gaps = 10/394 (2%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGSN--ALAANVCRRITGKLSTAIEKQEDVSVQLEA 58
M+SDKEQLRDISSIGLKTVI ELP S+ ALAANVC++ITG+L++AI KQEDVSVQLEA
Sbjct: 95 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEA 154
Query: 59 LDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKL 118
LDI++D+LSR G LL +FH ILT LLPQL+SPR AVRKRTI+AL HLVMSC ++ L
Sbjct: 155 LDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL 214
Query: 119 IDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREF 178
I+ LL L+ N S ST RTYIQC AAI RQAGHR E++E+++PL++K+ +DDELRE+
Sbjct: 215 IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREY 274
Query: 179 CLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEE 238
C+QA E+FV+RCPKE+ PH+ +I +CL Y+TYDPNYNY+DE+E E +
Sbjct: 275 CIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDE-------DENAMDADG 327
Query: 239 DGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKERE 298
+D+ D+EYSDDDDMSWKVRRAAAKCL+A+++TR +++ + Y+ VSP LI+RFKERE
Sbjct: 328 GDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKERE 387
Query: 299 ENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREK 358
ENVK+D+FHAY++LLK TR DP+ M+Q ++PL +L +QVP++VKAL Q++EK
Sbjct: 388 ENVKADVFHAYLSLLKQTRPVQSWL-CDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEK 446
Query: 359 SIRTRQDCLALLRELVQTLPGCLAPSLPALIPDV 392
S++TRQ C +L ELV LPG L +P L+P +
Sbjct: 447 SVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGI 480
|
Enhances transcription from various types of promoters (By similarity). Regulatory protein that interferes with the assembly of the SCF (SKP1-CUL1-F-box protein) ubiquitin ligase complex and thereby down-regulates ubiquitination of target proteins. Prevents neddylation of CUL1 by physically blocking access to the neddylation site. Disrupts interactions between CUL1 and SKP1 and between CUL1 and F-box proteins. Homo sapiens (taxid: 9606) |
| >sp|A7MBJ5|CAND1_BOVIN Cullin-associated NEDD8-dissociated protein 1 OS=Bos taurus GN=CAND1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust.
Identities = 233/394 (59%), Positives = 304/394 (77%), Gaps = 10/394 (2%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGSN--ALAANVCRRITGKLSTAIEKQEDVSVQLEA 58
M+SDKEQLRDISSIGLKTVI ELP S+ ALAANVC++ITG+L++AI KQEDVSVQLEA
Sbjct: 95 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEA 154
Query: 59 LDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKL 118
LDI++D+LSR G LL +FH ILT LLPQL+SPR AVRKRTI+AL HLVMSC ++ L
Sbjct: 155 LDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL 214
Query: 119 IDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREF 178
I+ LL L+ N S ST RTYIQC AAI RQAGHR E++E+++PL++K+ +DDELRE+
Sbjct: 215 IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREY 274
Query: 179 CLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEE 238
C+QA E+FV+RCPKE+ PH+ +I +CL Y+TYDPNYNY+DE+E E +
Sbjct: 275 CIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDE-------DENAMDADG 327
Query: 239 DGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKERE 298
+D+ D+EYSDDDDMSWKVRRAAAKCL+A+++TR +++ + Y+ VSP LI+RFKERE
Sbjct: 328 GDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKERE 387
Query: 299 ENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREK 358
ENVK+D+FHAY++LLK TR DP+ M+Q ++PL +L +QVP++VKAL Q++EK
Sbjct: 388 ENVKADVFHAYLSLLKQTRPVQSWL-CDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEK 446
Query: 359 SIRTRQDCLALLRELVQTLPGCLAPSLPALIPDV 392
S++TRQ C +L ELV LPG L +P L+P +
Sbjct: 447 SVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGI 480
|
Enhances transcription from various types of promoters. Regulatory protein that interferes with the assembly of the SCF (SKP1-CUL1-F-box protein) ubiquitin ligase complex and thereby down-regulates ubiquitination of target proteins. Prevents neddylation of CUL1 by physically blocking access to the neddylation site. Disrupts interactions between CUL1 and SKP1 and between CUL1 and F-box proteins. Bos taurus (taxid: 9913) |
| >sp|P97536|CAND1_RAT Cullin-associated NEDD8-dissociated protein 1 OS=Rattus norvegicus GN=Cand1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust.
Identities = 233/394 (59%), Positives = 304/394 (77%), Gaps = 10/394 (2%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGSN--ALAANVCRRITGKLSTAIEKQEDVSVQLEA 58
M+SDKEQLRDISSIGLKTVI ELP S+ ALAANVC++ITG+L++AI KQEDVSVQLEA
Sbjct: 95 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEA 154
Query: 59 LDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKL 118
LDI++D+LSR G LL +FH ILT LLPQL+SPR AVRKRTI+AL HLVMSC ++ L
Sbjct: 155 LDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL 214
Query: 119 IDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREF 178
I+ LL L+ N S ST RTYIQC AAI RQAGHR E++E+++PL++K+ +DDELRE+
Sbjct: 215 IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREY 274
Query: 179 CLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEE 238
C+QA E+FV+RCPKE+ PH+ +I +CL Y+TYDPNYNY+DE+E E +
Sbjct: 275 CIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDE-------DENAMDADG 327
Query: 239 DGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKERE 298
+D+ D+EYSDDDDMSWKVRRAAAKCL+A+++TR +++ + Y+ VSP LI+RFKERE
Sbjct: 328 GDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKERE 387
Query: 299 ENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREK 358
ENVK+D+FHAY++LLK TR DP+ M+Q ++PL +L +QVP++VKAL Q++EK
Sbjct: 388 ENVKADVFHAYLSLLKQTRPVQSWL-CDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEK 446
Query: 359 SIRTRQDCLALLRELVQTLPGCLAPSLPALIPDV 392
S++TRQ C +L ELV LPG L +P L+P +
Sbjct: 447 SVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGI 480
|
Regulatory protein that interferes with the assembly of the SCF (SKP1-CUL1-F-box protein) ubiquitin ligase complex and thereby down-regulates ubiquitination of target proteins. Prevents neddylation of CUL1 by physically blocking access to the neddylation site. Disrupts interactions between CUL1 and SKP1 and between CUL1 and F-box proteins (By similarity). Enhances transcription from various types of promoters. Rattus norvegicus (taxid: 10116) |
| >sp|Q9R0L4|CAND2_RAT Cullin-associated NEDD8-dissociated protein 2 OS=Rattus norvegicus GN=Cand2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust.
Identities = 208/415 (50%), Positives = 281/415 (67%), Gaps = 38/415 (9%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGS--NALAANVCRRITGKLSTAIEKQEDVSVQLEA 58
M SDKEQLRDI+ IGLKTV+SELP + + LA +VCR+ITG+L++AI +QEDV+VQLEA
Sbjct: 133 MRSDKEQLRDIAGIGLKTVLSELPPAATGSGLAISVCRKITGQLTSAIAQQEDVAVQLEA 192
Query: 59 LDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKL 118
LDILSD+LSR GA L +FH +L LLPQLSSPR AVRKRT+VAL HL +C+ L+ +L
Sbjct: 193 LDILSDMLSRLGAPLGTFHASLLHCLLPQLSSPRLAVRKRTVVALGHLAAACSTDLFVEL 252
Query: 119 IDFL---LEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDEL 175
D L L G S + RT IQC ++ RQAGHR H++R+MPL+ ++ +DDEL
Sbjct: 253 ADHLVDRLPGPRAPASPAAIRTLIQCLGSVGRQAGHRLGAHLDRLMPLVEEFCNLDDDEL 312
Query: 176 REFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDT 235
RE CLQA EAF+++CPKE+ PH+ ++T LCL Y+ +DPNYN++ +EE E M+T
Sbjct: 313 RESCLQAFEAFLRKCPKEMDPHVPNVTSLCLQYMKHDPNYNHDSDEE--------EQMET 364
Query: 236 EEEDGEDEGEDDNEYSDD---------DDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLV 286
E D+E+S+ DDMSWKVRRAAAKC+ A+I++R DL+ D + +
Sbjct: 365 E----------DSEFSEQESEDEYSDDDDMSWKVRRAAAKCMAALISSRPDLLPDFHCTL 414
Query: 287 SPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPS--DPNQMDQEDSPLCLLSTQV 344
+P LI FKEREENVK+DIF AY+ LL+ TR + +P Q + L +L QV
Sbjct: 415 APALIRCFKEREENVKADIFGAYIMLLRHTRPPKGWLEAVEEPTQTGRN---LNMLRAQV 471
Query: 345 PSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVT-SVAEW 398
P ++KALQ QL+++++RTRQ C L EL LPGCLA + L+ + S+A++
Sbjct: 472 PLVMKALQRQLKDRNVRTRQGCFNLFTELAGVLPGCLAEHMTVLVSGIVFSLADY 526
|
May play a role in the assembly of ubiquitin ligase complexes and modulate the ubiquitination of target proteins. May be a transcription regulator. Rattus norvegicus (taxid: 10116) |
| >sp|O75155|CAND2_HUMAN Cullin-associated NEDD8-dissociated protein 2 OS=Homo sapiens GN=CAND2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust.
Identities = 206/408 (50%), Positives = 276/408 (67%), Gaps = 36/408 (8%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGS--NALAANVCRRITGKLSTAIEKQEDVSVQLEA 58
M SDKEQLRDI+ IGLKTV+SELP + + LA NVCR+ITG+L++AI +QEDV+VQLEA
Sbjct: 95 MRSDKEQLRDIAGIGLKTVLSELPPAATGSGLATNVCRKITGQLTSAIAQQEDVAVQLEA 154
Query: 59 LDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKL 118
LDILSD+LSR G L +FH +L LLPQLSSPR AVRKR + AL HL +C+ L+ +L
Sbjct: 155 LDILSDMLSRLGVPLGAFHASLLHCLLPQLSSPRLAVRKRAVGALGHLAAACSTDLFVEL 214
Query: 119 IDFLLEGLTTNK---STSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDEL 175
D LL+ L + S + RT IQC ++ RQAGHR H++R++PL+ + +DDEL
Sbjct: 215 ADHLLDRLPGPRVPTSPTAIRTLIQCLGSVGRQAGHRLGAHLDRLVPLVEDFCNLDDDEL 274
Query: 176 REFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDT 235
RE CLQA EAF+++CPKE+ PH+ ++T LCL YI +DPNYNY+ +E+ E M+T
Sbjct: 275 RESCLQAFEAFLRKCPKEMGPHVPNVTSLCLQYIKHDPNYNYDSDED-------EEQMET 327
Query: 236 EEEDGEDEGEDDNEYSDD---------DDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLV 286
E D+E+S+ DDMSWKVRRAAAKC+ A+I++R DL+ D + +
Sbjct: 328 E----------DSEFSEQESEDEYSDDDDMSWKVRRAAAKCIAALISSRPDLLPDFHCTL 377
Query: 287 SPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPS--DPNQMDQEDSPLCLLSTQV 344
+P LI RFKEREENVK+D+F AY+ LL+ T+ + +P Q S L +L QV
Sbjct: 378 APVLIRRFKEREENVKADVFTAYIVLLRQTQPPKGWLEAMEEPTQT---GSNLHMLRGQV 434
Query: 345 PSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDV 392
P +VKALQ QL+++S+R RQ C +LL EL LPG LA +P L+ +
Sbjct: 435 PLVVKALQRQLKDRSVRARQGCFSLLTELAGVLPGSLAEHMPVLVSGI 482
|
May play a role in the assembly of ubiquitin ligase complexes and modulate the ubiquitination of target proteins. May be a transcription regulator. Homo sapiens (taxid: 9606) |
| >sp|Q6ZQ73|CAND2_MOUSE Cullin-associated NEDD8-dissociated protein 2 OS=Mus musculus GN=Cand2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust.
Identities = 205/415 (49%), Positives = 281/415 (67%), Gaps = 38/415 (9%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGS--NALAANVCRRITGKLSTAIEKQEDVSVQLEA 58
M SDKEQLRDI+ IGLKTV+SELP + + LA NVCR+ITG+L++AI +QEDV+VQLEA
Sbjct: 95 MRSDKEQLRDIAGIGLKTVLSELPPAATGSGLAINVCRKITGQLTSAIAQQEDVAVQLEA 154
Query: 59 LDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKL 118
LDILSD+LSR GA L +FH +L LLPQLSSPR AVRKRT+VAL HL +C+ L+ +L
Sbjct: 155 LDILSDMLSRLGAPLGTFHASLLHCLLPQLSSPRLAVRKRTVVALGHLAAACSTDLFVEL 214
Query: 119 IDFL---LEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDEL 175
D L L G S + RT IQC ++ RQAGHR H++R++P++ ++ +DDEL
Sbjct: 215 ADHLVDRLPGPRAPASPAAIRTLIQCLGSVGRQAGHRLGAHLDRLVPMVEEFCNLDDDEL 274
Query: 176 REFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDT 235
RE CLQA EAF+++CPKE+ PH+ ++T LCL Y+ +DPNY+++ ++E E M+T
Sbjct: 275 RESCLQAFEAFLRKCPKEMDPHVPNVTSLCLQYMKHDPNYDHDSDDE--------EQMET 326
Query: 236 EEEDGEDEGEDDNEYSDD---------DDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLV 286
E D+E+S+ DDMSWKVRRAAAKC+ A+I++R DL+ D + +
Sbjct: 327 E----------DSEFSEQESEDEYSDDDDMSWKVRRAAAKCMAALISSRPDLLPDFHCTL 376
Query: 287 SPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPS--DPNQMDQEDSPLCLLSTQV 344
+P LI RFKEREENVK+DIF AY+ LL+ TR + +P Q + L +L QV
Sbjct: 377 APALIRRFKEREENVKADIFGAYIMLLRHTRPPKGWLEAVEEPTQTGRN---LNMLRAQV 433
Query: 345 PSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVT-SVAEW 398
P ++KALQ QL+++++RTRQ C L EL LPG LA + L+ + S+A++
Sbjct: 434 PLVIKALQRQLKDRNVRTRQGCFNLFTELAGVLPGSLAEHMAVLVSGIVFSLADY 488
|
May play a role in the assembly of ubiquitin ligase complexes and modulate the ubiquitination of target proteins. May be a transcription regulator. Mus musculus (taxid: 10090) |
| >sp|Q8L5Y6|CAND1_ARATH Cullin-associated NEDD8-dissociated protein 1 OS=Arabidopsis thaliana GN=CAND1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 322 bits (826), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 250/752 (33%), Positives = 388/752 (51%), Gaps = 99/752 (13%)
Query: 1079 IYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCT 1138
+ + L SPV+A+VG+ +YK+TAEAL V + V+V+RP T+ +DF PF IY
Sbjct: 506 FHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVVRPSTAGMGFDFKPFVHPIYNAI 565
Query: 1139 LVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKAL 1198
+ RL D DQEVKE AI+CMG +I GD L++ELP CLP+L+DR+ NEITRLT VKA
Sbjct: 566 MSRLTNQDQDQEVKECAITCMGLVISTFGDQLRAELPSCLPVLVDRMGNEITRLTAVKAF 625
Query: 1199 TKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNK 1258
+ IA SPL I+L +L I L FLRK R L+ +TL+ ++TL+ Y I +E
Sbjct: 626 SVIATSPLHINLSCVLDHLIAELTGFLRKANRVLRQATLITMNTLVTAYGDKIGSEAYEV 685
Query: 1259 VTVELAPLVSESDLHIAQLTL----TLLT--------SIA---KIQPNALVEPAAASILP 1303
+ VEL+ L+S SDLH+ L L TL+T S+A K+ P AL S L
Sbjct: 686 ILVELSSLISVSDLHMTALALELCCTLMTGKSCSENISLAVRNKVLPQALT--LVKSPLL 743
Query: 1304 QIGRHTDL------------TSVADLKQVILNAFTPT--SEEVKSAASYTLGS------I 1343
Q DL TS L + +L+ P+ S V A Y++ +
Sbjct: 744 QGQALLDLQKFFEALVYHANTSFYTLLESLLSCAKPSPQSGGVPKQALYSIAQCVAVLCL 803
Query: 1344 AVG--NLQQYVPFVLKEIEN----QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAI 1397
A G N V +++ +++ +Q+L L SL EI + S A ++ V
Sbjct: 804 AAGDKNCSSTVKMLMEILKDDSGTNSAKQHLALLSLGEI--GRRKDLSAHAGIETIVIES 861
Query: 1398 WAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFT 1457
+ F E ++ + LG + + + SN LP + + + N + +L ++K
Sbjct: 862 FQSPF-------EEIKSAASYALGNIAVGNLSNYLPFILDQI-DNQQKKQYILLHSLKEV 913
Query: 1458 ISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVK 1517
I Q S DK ++ Q S++ K++ +L E + V+N+ +
Sbjct: 914 IVRQ--SVDK-----------ADFQNSSVE-------KILALLFNHCESEEEGVRNVVAE 953
Query: 1518 CLGPLV-----NKVKEFQVET----------IVDALCSNMVSDKEQLRDISSIGLKTVIS 1562
CLG + V QV T +V A+ ++V E+L +I + + +
Sbjct: 954 CLGKMALIEPEKLVPALQVRTTSPAAFTRATVVTAVKYSVVERPEKLDEIIFPQISSFLM 1013
Query: 1563 VVYCLGDRNSSSNMKIDTLAFTHTLLTTHPPAVFHPHIHIL----LPPVIIIKTLIREVE 1618
++ GDR+ F H + P + + L +I K LIR V+
Sbjct: 1014 LIK-DGDRHVRRAAVSALSTFAH-----YKPNLIKGLLPELLPLLYDQTVIKKELIRTVD 1067
Query: 1619 MGPFKHTVDDGLDIRKAAFECMYTLLDTCLDRVDMFEFL-NHLESGLRDHYDIKMLTYLM 1677
+GPFKH VDDGL++RKAAFEC++TL+D+CLD+V+ F+ L+SGL DHYD+KML +L+
Sbjct: 1068 LGPFKHVVDDGLELRKAAFECVFTLVDSCLDQVNPSSFIVPFLKSGLEDHYDLKMLCHLI 1127
Query: 1678 LARLAQMTPAALLQRLERIVEPLRNTVTLKVKANSVKQEYEKQDELKRSAMRAVAALLTI 1737
L+ LA P+A+L L+ +VEPL T++ K K ++VKQE+++ +++ RSA+RA+++L I
Sbjct: 1128 LSLLADKCPSAVLAVLDSLVEPLHKTISFKPKQDAVKQEHDRNEDMIRSALRAISSLDRI 1187
Query: 1738 QDADKNPALNDFVATIKNSPELQTIFDSMQKD 1769
D + + +K S L F +++ +
Sbjct: 1188 NGVDYSHKFKGLMGDMKRSVPLWEKFQTIRNE 1219
|
Required for SCF(TIR1) function. Modulates SCF(TIR1) function through its interactions with the CUL1 subunit. Positively regulates multiple E3 ubiquitin-protein ligase complexes and their associated developmental processes. Represses photomorphogenesis by promoting HY5 degradation in darkness. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q86KD1|CAND1_DICDI Cullin-associated NEDD8-dissociated protein 1 OS=Dictyostelium discoideum GN=cand1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 225 bits (574), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 153/416 (36%), Positives = 250/416 (60%), Gaps = 22/416 (5%)
Query: 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAI--EKQEDVS-VQLEAL 59
S+KE+L +IS IGLKT+I+ LP ++++ V + + KL I EK +D + +++ L
Sbjct: 96 SNKEELVEISGIGLKTIITNLPSEGSSISTLVIKNLVPKLLIGIDSEKLKDKNEIKMSCL 155
Query: 60 DILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLI 119
DIL+DLL ++G+ + I +LP+L++ R A+RKR I+ L+++ L+ L+
Sbjct: 156 DILNDLLQKYGSFMIGDLENIQKVVLPKLNATRPAIRKRAILCLANIAFPSPDNLFNSLL 215
Query: 120 DFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKY----SREEDDEL 175
D++++ + K T IQ AIC+ +G+R +++ +VMP +L Y E++DEL
Sbjct: 216 DYIIKSIEEAKKPDHISTLIQAIGAICKSSGYRLGKYLPKVMPHVLNYCDNNKFEQNDEL 275
Query: 176 REFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDT 235
RE CL EA +++C K++TP+I I LC YI +DPNY+ + E E G+ E M+T
Sbjct: 276 RENCLLCFEAIIEKCQKDVTPYIGEIITLCTKYIKFDPNYSDDGEGEE-DGDEEEEEMET 334
Query: 236 E--EEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIAR 293
++ ++E E++ + SDDDD+SWK+RR++ K L AII+TR +L+ ++Y+ V+P L R
Sbjct: 335 SGDNDEEQEEEEEEEDLSDDDDISWKIRRSSCKTLCAIISTRPELLVELYQKVAPVLYNR 394
Query: 294 FKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQC 353
FKEREENV+ DIF ++ LLK ++P + +L QVP LV+++
Sbjct: 395 FKEREENVRLDIFTTFVLLLKQLNKKL----ANPQAKE-------VLKQQVPKLVQSISK 443
Query: 354 QLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVT-SVAEWDEEEGLGGEG 408
L +KSIRTR +ALL+ELV +PG L + ++ + S++E + L E
Sbjct: 444 SLIDKSIRTRVGAIALLKELVMIIPGSLTGQVSQIVNGINLSLSEKNTNSNLKIEA 499
|
May interfere with the assembly of SCF-type (SKP1-CUL1-F-box protein) ubiquitin ligase complexes, thereby down-regulating ubiquitination of target proteins. May prevent neddylation of cullins by physically blocking access to the neddylation site. Dictyostelium discoideum (taxid: 44689) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1827 | ||||||
| 307178347 | 1230 | Cullin-associated NEDD8-dissociated prot | 0.518 | 0.769 | 0.406 | 0.0 | |
| 345498168 | 1236 | PREDICTED: cullin-associated NEDD8-disso | 0.211 | 0.313 | 0.688 | 1e-152 | |
| 383861077 | 1235 | PREDICTED: cullin-associated NEDD8-disso | 0.206 | 0.306 | 0.673 | 1e-151 | |
| 66548257 | 1235 | PREDICTED: cullin-associated NEDD8-disso | 0.206 | 0.306 | 0.665 | 1e-151 | |
| 340726325 | 1235 | PREDICTED: cullin-associated NEDD8-disso | 0.206 | 0.306 | 0.665 | 1e-150 | |
| 149632267 | 1243 | PREDICTED: cullin-associated NEDD8-disso | 0.413 | 0.607 | 0.405 | 1e-150 | |
| 380024286 | 1235 | PREDICTED: LOW QUALITY PROTEIN: cullin-a | 0.206 | 0.306 | 0.663 | 1e-150 | |
| 350423911 | 1235 | PREDICTED: cullin-associated NEDD8-disso | 0.206 | 0.306 | 0.663 | 1e-150 | |
| 332022242 | 1238 | Cullin-associated NEDD8-dissociated prot | 0.211 | 0.312 | 0.686 | 1e-149 | |
| 307200142 | 1238 | Cullin-associated NEDD8-dissociated prot | 0.211 | 0.312 | 0.683 | 1e-149 |
| >gi|307178347|gb|EFN67101.1| Cullin-associated NEDD8-dissociated protein 1 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/1126 (40%), Positives = 614/1126 (54%), Gaps = 179/1126 (15%)
Query: 793 ITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQL---TIVALSHLVMSCN 849
++VQ EAL +V L H + AL + S + TIVALSHL+ S N
Sbjct: 146 VSVQLEALDIVADLLSRFGPLLVTFHSTILTALLPQLSSPRQAVRKRTIVALSHLLTSSN 205
Query: 850 LQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREE 909
LY KL+D+LLEGL + + RTYIQC A+ICRQAGHRF E IERVMPLI++YS E+
Sbjct: 206 NYLYNKLLDYLLEGLQIQTAKNVIRTYIQCIASICRQAGHRFGEQIERVMPLIVQYSNED 265
Query: 910 DDELREFCLQACEAFVQRCPKEITPHIQSI-------------------------GRHTD 944
DDELRE+CLQA E+FV RCPKEITPHI I G T
Sbjct: 266 DDELREYCLQAFESFVYRCPKEITPHINKIIEICLIYITYDPNYNYDDDINDLSDGEGTA 325
Query: 945 LTSVA--------------DLKQVILNAFTPTSEEVKSAASYTLGSIAEIIS-------- 982
+ D+ + A E V S+ L + +++S
Sbjct: 326 MEIEEDGEEDAEDEYSDDDDMSWKVRRAAAKCLEAVVSSRRELLSDLYKVVSPALIARFK 385
Query: 983 -WQSTSTSGV--------------AQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKL 1027
Q+ +GV A LQQ VP I + + + TR L +L
Sbjct: 386 GKQTRPATGVPLDPDAMEDDDGPIALLQQQVPLIVKAVHRQMKEKSIKTRQDCFSLLKEL 445
Query: 1028 TLIDPS-------NLLPRLQESL--KSNSALMRT-THQSNQTFNVIIQRNDIHNHNEETS 1077
L+ P L+P +Q SL K++S+ M+ T T V Q H H
Sbjct: 446 VLVLPGALTNHIPALIPGIQYSLGDKNSSSNMKIDTLAFVHTLLVTHQPEAFHVHMP--- 502
Query: 1078 FIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQC 1137
L P+I +VGD+FYKI AEALLVLQQ V+VIRP P S F P +++IY C
Sbjct: 503 -------VLAPPIILAVGDSFYKIAAEALLVLQQLVQVIRPHDKPFSRGFTPLSNEIYHC 555
Query: 1138 TLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKA 1197
TL+RLK ADIDQEVKERAI+CMGQI+ + GD L +L VCLPI LDRLRNEITRLTTVKA
Sbjct: 556 TLMRLKTADIDQEVKERAIACMGQILAHFGDTLSDKLHVCLPIFLDRLRNEITRLTTVKA 615
Query: 1198 LTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLN 1257
LT IAASPLR+DL+PI+ + IPILGSFLRKNQRALKLS+L LLDTL+ NY SA+ ++L+
Sbjct: 616 LTCIAASPLRVDLKPIMEEAIPILGSFLRKNQRALKLSSLPLLDTLVCNYSSALHPDLLD 675
Query: 1258 KVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQI--------GRHT 1309
KVT EL L++ESDLHIAQLTL LL++IAK+ P AL + ILP+I +
Sbjct: 676 KVTTELPALLNESDLHIAQLTLNLLSTIAKLHPAALTR-VSDHILPEILILVKSPLLQGI 734
Query: 1310 DLTSVADLKQVILNAFTP---------------TSEEVKSAASYTLGSIAVG-------N 1347
L S+ + Q ++ A P T + A ++L A
Sbjct: 735 ALNSMLEFFQALVQANLPGLGYRDLLAMLIVPVTQSVLHKQAYHSLAKCAAALTITWHEE 794
Query: 1348 LQQYVPFVLKEIENQPKRQYLLLHSLKEIISWQ---STSTSGVAQLQQFVPAIWAQLFLH 1404
Q V +LK+++N Q + H ++ + SG+ L+ + ++
Sbjct: 795 AQCIVQQLLKDVQNPSDIQNVAQHIFALLVIGEIGRHVDLSGINSLKHTIINSFSS---- 850
Query: 1405 CECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTS 1464
E ++ + LG + + + LP + + +++ + +L ++K I+ Q S
Sbjct: 851 ---HSEEVKSAASYTLGNIAIGNLPEYLPFILQEIEAQPK-RQYLLLHSLKEIITSQSAS 906
Query: 1465 SDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVN 1524
+S LQ + + +L R E +N+ +CLG
Sbjct: 907 PSG----------VSNLQ--------NFVPSIWMLLYRHCECTEEGTRNVVAECLG---- 944
Query: 1525 KVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVIS---------VVYCLGD-----R 1570
K+ T++ L ++ S +R + +K IS + C+G+
Sbjct: 945 KLTLIDPATLLPRLQESLKSSSALMRTTTVTAVKFTISDQPQPIDAMLKQCMGNFLVALE 1004
Query: 1571 NSSSNM-KIDTLAFTHTLLTTHPPAVFHPHIHILLPPVI----IIKTLIREVEMGPFKHT 1625
+ N+ ++ +AF + P + + +LP + I K LIREVEMGPFKHT
Sbjct: 1005 DPDLNVRRVALVAFNSA--AHNKPMLIRDLLDAVLPHLYAETKIKKELIREVEMGPFKHT 1062
Query: 1626 VDDGLDIRKAAFECMYTLLDTCLDRVDMFEFLNHLESGLRDHYDIKMLTYLMLARLAQMT 1685
VDDGLD+RKAAFECMYTLLD+CLDR+D+FEFLNH+E+GLRDHYDIKMLTYLM ARLAQ+
Sbjct: 1063 VDDGLDLRKAAFECMYTLLDSCLDRLDVFEFLNHVENGLRDHYDIKMLTYLMTARLAQLC 1122
Query: 1686 PAALLQRLERIVEPLRNTVTLKVKANSVKQEYEKQDELKRSAMRAVAALLTIQD------ 1739
P A+LQRLER+V+PL++T T+KVKANSVKQEYEKQDELKRSA+RAVAALLTI D
Sbjct: 1123 PTAVLQRLERLVDPLKSTCTMKVKANSVKQEYEKQDELKRSALRAVAALLTIPDAGNNIK 1182
Query: 1740 ---ADKNPALNDFVATIKNSPELQTIFDSMQKDSSLSNQQDPHMMD 1782
ADKNP+L++FV IK +PELQ +F+ +QKD + SN + + MD
Sbjct: 1183 YRFADKNPSLSEFVGQIKATPELQPLFEIIQKDCTGSNVNETNAMD 1228
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345498168|ref|XP_001606869.2| PREDICTED: cullin-associated NEDD8-dissociated protein 1-like isoform 1 [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 270/392 (68%), Positives = 327/392 (83%), Gaps = 5/392 (1%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALD 60
MVSDKEQLRDISSIGLKTVI+ELPLG++ALAANVC+RITG+LS AIEKQEDV VQLEALD
Sbjct: 95 MVSDKEQLRDISSIGLKTVIAELPLGTSALAANVCKRITGRLSNAIEKQEDVPVQLEALD 154
Query: 61 ILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLID 120
I++DLLSRFG+LL SFH VIL ALLPQLSSPRQAVRKRTIVALSHL+ S N QLY KL+D
Sbjct: 155 IIADLLSRFGSLLVSFHSVILAALLPQLSSPRQAVRKRTIVALSHLMTSSNSQLYNKLLD 214
Query: 121 FLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCL 180
LLEGL+ NK + RTYIQC A+ICRQAGHRF E IERVMPLI++YS+E+DDELRE+CL
Sbjct: 215 HLLEGLSNNKVNNVVRTYIQCIASICRQAGHRFGEQIERVMPLIVQYSKEDDDELREYCL 274
Query: 181 QACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDG 240
QA EAFV RCPKEITPHI I E+CL Y+TYDPNYNY+D+ L +G G M+TEE+
Sbjct: 275 QAFEAFVYRCPKEITPHINKIIEICLMYLTYDPNYNYDDDAADL-SDGEGAVMETEEDGE 333
Query: 241 EDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREEN 300
E+ + EYSDDDDMSWKVRRAA KCLEA++++RR+L+ ++Y++VSP LI+RFKEREEN
Sbjct: 334 EEAED---EYSDDDDMSWKVRRAATKCLEAVVSSRRELLSELYKVVSPALISRFKEREEN 390
Query: 301 VKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSI 360
VKSDIFHAY+ LL+ T+ + +T DP+ M+ E+ P+ LL QVP +V+A+ Q++EKSI
Sbjct: 391 VKSDIFHAYITLLRQTKPTTGVT-LDPDSMEDEEGPISLLQQQVPLIVRAVHRQMKEKSI 449
Query: 361 RTRQDCLALLRELVQTLPGCLAPSLPALIPDV 392
+TRQDCL+LL+ELV LPG L +PALIP +
Sbjct: 450 KTRQDCLSLLKELVLVLPGALTNHIPALIPGI 481
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383861077|ref|XP_003706013.1| PREDICTED: cullin-associated NEDD8-dissociated protein 1-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 544 bits (1402), Expect = e-151, Method: Compositional matrix adjust.
Identities = 270/401 (67%), Positives = 323/401 (80%), Gaps = 23/401 (5%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALD 60
MVSDKEQLRDISSIGLKTVISELPLGS+ L A+VCRRITG+LS+AIEKQEDVSVQLEALD
Sbjct: 95 MVSDKEQLRDISSIGLKTVISELPLGSSVLVASVCRRITGRLSSAIEKQEDVSVQLEALD 154
Query: 61 ILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLID 120
I++DLLSRFGALL +FH +IL ALLPQLSSPRQAVRKRTIVALSHL+ S N LY KL+D
Sbjct: 155 IVADLLSRFGALLITFHSLILAALLPQLSSPRQAVRKRTIVALSHLLTSSNNYLYNKLLD 214
Query: 121 FLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCL 180
LLEGL T + + RTYIQC A+ICRQAGHRF E IERVMPLI++YS E+DDELRE+CL
Sbjct: 215 HLLEGLGTQTAKNVIRTYIQCIASICRQAGHRFGEQIERVMPLIVQYSNEDDDELREYCL 274
Query: 181 QACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDG 240
QA EAFV RCPKEITPHI I E+CLTYITYDPNYNY+D+ + DG
Sbjct: 275 QAFEAFVYRCPKEITPHINKIIEICLTYITYDPNYNYDDDMNDVS-------------DG 321
Query: 241 ED---------EGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLI 291
ED E + ++EYSDDDDMSWKVRRAAAKCLEA++++RR+L+ ++Y++VSP LI
Sbjct: 322 EDVMMEIEEDGEEDAEDEYSDDDDMSWKVRRAAAKCLEAVVSSRRELLPELYKVVSPALI 381
Query: 292 ARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKAL 351
+RFKEREENVKSDIFHAY+ALL+ TR + + P DP+ M+ +D P+ LL QVP +VKA+
Sbjct: 382 SRFKEREENVKSDIFHAYIALLRQTRPATGV-PLDPDAMEDDDGPISLLQQQVPLIVKAV 440
Query: 352 QCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDV 392
Q++EKSI+TRQDC +LL+ELV LPG L+ +PALIP +
Sbjct: 441 HRQMKEKSIKTRQDCFSLLKELVLVLPGALSNHIPALIPGI 481
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|66548257|ref|XP_393409.2| PREDICTED: cullin-associated NEDD8-dissociated protein 1-like isoform 1 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 267/401 (66%), Positives = 321/401 (80%), Gaps = 23/401 (5%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALD 60
MVSDKEQLRDISSIGLKTVISELPLGS+AL ANVC+RITG+LS+AIEKQEDVSVQLEALD
Sbjct: 95 MVSDKEQLRDISSIGLKTVISELPLGSSALVANVCKRITGRLSSAIEKQEDVSVQLEALD 154
Query: 61 ILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLID 120
I++DLLSRFGALL +FH IL ALLPQLSSPRQAVRKRTI+ALSHL+ S N LY KL+D
Sbjct: 155 IMADLLSRFGALLITFHSTILAALLPQLSSPRQAVRKRTIIALSHLLTSSNNYLYNKLVD 214
Query: 121 FLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCL 180
LLEGL T + + RTYIQC A+ICRQAGHRF E IE+VMPLI++YS E+DDELRE+CL
Sbjct: 215 HLLEGLYTQTAKNVIRTYIQCIASICRQAGHRFGEQIEKVMPLIVQYSNEDDDELREYCL 274
Query: 181 QACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDG 240
QA E+FV RCPKEITPHI I E+CL YITYDPNYNY+D+ + DG
Sbjct: 275 QAFESFVYRCPKEITPHINKIIEICLVYITYDPNYNYDDDMNDMS-------------DG 321
Query: 241 ED---------EGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLI 291
ED E + ++EYSDDDDMSWKVRRAAAKCLEA++++RR+L+ ++Y++VSP LI
Sbjct: 322 EDVMMEVEEDGEEDAEDEYSDDDDMSWKVRRAAAKCLEAVVSSRRELLPELYKIVSPALI 381
Query: 292 ARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKAL 351
RFKEREENVKSDIFHAY+ALL+ TR + + P DP+ M+ +D P+ LL QVP +VKA+
Sbjct: 382 LRFKEREENVKSDIFHAYIALLRQTRPATGV-PLDPDAMEDDDGPIALLQQQVPLIVKAV 440
Query: 352 QCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDV 392
Q++EKSI+TRQDC +LL+ELV LPG L+ +PALIP +
Sbjct: 441 HRQMKEKSIKTRQDCFSLLKELVLVLPGALSNHIPALIPGI 481
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340726325|ref|XP_003401510.1| PREDICTED: cullin-associated NEDD8-dissociated protein 1-like isoform 1 [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 541 bits (1394), Expect = e-150, Method: Compositional matrix adjust.
Identities = 267/401 (66%), Positives = 321/401 (80%), Gaps = 23/401 (5%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALD 60
MVSDKEQLRDISSIGLKTVISELPLGS+AL ANVC+RITG+LS+AIEKQEDVSVQLEALD
Sbjct: 95 MVSDKEQLRDISSIGLKTVISELPLGSSALVANVCKRITGRLSSAIEKQEDVSVQLEALD 154
Query: 61 ILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLID 120
I++DLLSRFGALL +FH IL ALLPQLSSPRQAVRKRTI+ALSHL+ S N LY KL+D
Sbjct: 155 IMADLLSRFGALLITFHSTILAALLPQLSSPRQAVRKRTIIALSHLLTSSNNYLYNKLVD 214
Query: 121 FLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCL 180
LLEGL T + + RTYIQC A+ICRQAGHRF E IE+VMPLI++YS E+DDELRE+CL
Sbjct: 215 HLLEGLYTQTAKNVIRTYIQCIASICRQAGHRFGEQIEKVMPLIVQYSNEDDDELREYCL 274
Query: 181 QACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDG 240
QA E+FV RCPKEITPHI I E+CL YITYDPNYNY+D+ E DG
Sbjct: 275 QAFESFVYRCPKEITPHINKIIEICLVYITYDPNYNYDDDM-------------NEMSDG 321
Query: 241 ED---------EGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLI 291
ED E + ++EYSDDDDMSWKVRRAAAKCLEA++++RR+L+ ++Y++VSP LI
Sbjct: 322 EDIMMEVEEDGEEDAEDEYSDDDDMSWKVRRAAAKCLEAVVSSRRELLPELYKVVSPALI 381
Query: 292 ARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKAL 351
+RFKEREENVKSDIFHAY+ALL+ TR + + DP+ M+ +D P+ LL QVP +VKA+
Sbjct: 382 SRFKEREENVKSDIFHAYIALLRQTRPATGVA-LDPDAMEDDDGPIALLQQQVPLIVKAV 440
Query: 352 QCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDV 392
Q++EKSI+TRQDC +LL+ELV LPG L+ +PALIP +
Sbjct: 441 HRQMKEKSIKTRQDCFSLLKELVLVLPGALSNHIPALIPGI 481
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|149632267|ref|XP_001511066.1| PREDICTED: cullin-associated NEDD8-dissociated protein 1-like [Ornithorhynchus anatinus] | Back alignment and taxonomy information |
|---|
Score = 541 bits (1393), Expect = e-150, Method: Compositional matrix adjust.
Identities = 346/854 (40%), Positives = 504/854 (59%), Gaps = 99/854 (11%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGSN--ALAANVCRRITGKLSTAIEKQEDVSVQLEA 58
M+SDKEQLRDISSIGLKTVI ELP S+ ALAANVC++ITG+L++AI KQEDVSVQLEA
Sbjct: 108 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEA 167
Query: 59 LDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKL 118
LDI++D+LSR G LL +FH ILT LLPQL+SPR AVRKRTI+AL HLVMSC ++ L
Sbjct: 168 LDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL 227
Query: 119 IDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREF 178
I+ LL L+ N S ST RTYIQC AAI RQAGHR E++E+++PL++K+ +DDELRE+
Sbjct: 228 IEHLLTELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREY 287
Query: 179 CLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEE 238
C+QA E+FV+RCPKE+ PH+ +I +CL Y+TYDPNYNY+DE+E E +
Sbjct: 288 CIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDE-------DENAMDADG 340
Query: 239 DGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKERE 298
+D+ D+EYSDDDDMSWKVRRAAAKCL+A+++TR +++ + Y+ VSP LIARFKERE
Sbjct: 341 ADDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALIARFKERE 400
Query: 299 ENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREK 358
ENVK+D+FHAY++LLK TR DP+ M+Q ++PL +L +QVP++VKAL Q++EK
Sbjct: 401 ENVKADVFHAYLSLLKQTRPVQSWL-CDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEK 459
Query: 359 SIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEE 418
S++TRQ C +L ELV LPG L +P L+P V
Sbjct: 460 SVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGVI------------------------- 494
Query: 419 DGEDEGEDDNEYS-DDDDMSWKVRRAAAKCLEAIIATRR-DLIGDMYRLVSPPLIARFKE 476
+S +D S ++ A CL I+ + + + PP++A +
Sbjct: 495 -----------FSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGD 543
Query: 477 REENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKA-LQCQL 535
+ S+ L+K R +P D ++ L + + L A + ++
Sbjct: 544 PFYKITSEALLVTQQLVKVIRPLEQPSPFDATPYIKD-----LFTCTIKRLKAADIDQEV 598
Query: 536 REKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRL 595
+E++I + L + + S DL S LQ +L ++ R L L
Sbjct: 599 KERAISCMGQIICTLGDNLGS-----------DLPSTLQIFLERLKNEITRLTTVKALTL 647
Query: 596 LEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLS 655
+ ++ L P+ I AS LR + R + + L ++ +L
Sbjct: 648 IAGSPLKID------LRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSL--- 698
Query: 656 TLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVE 715
T ++D +L P IS ESD+H++Q+ ++ LT++AK+ P++L +
Sbjct: 699 TAAMIDAVLDELPPLIS----------------ESDMHVSQMAISFLTTLAKVYPSSLSK 742
Query: 716 PAAASILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMT-GT 774
+ SIL +++ + +SPLLQG AL++MLEFF++LV+ L + +LL ML PV + T
Sbjct: 743 -ISGSILDELIGLVRSPLLQGGALSAMLEFFQALVVTGTSNLGYMDLLRMLTGPVYSQST 801
Query: 775 AL-HKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNK--DDAHQVTIVALS----H 827
AL HKQ+++S+AKCVAAL +E VV +F++++K ++ D + +++L H
Sbjct: 802 ALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHH 861
Query: 828 LVMSCNLQLTIVAL 841
+ +S L+L V L
Sbjct: 862 IDLSGQLELKSVIL 875
|
Source: Ornithorhynchus anatinus Species: Ornithorhynchus anatinus Genus: Ornithorhynchus Family: Ornithorhynchidae Order: Monotremata Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|380024286|ref|XP_003695932.1| PREDICTED: LOW QUALITY PROTEIN: cullin-associated NEDD8-dissociated protein 1-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 266/401 (66%), Positives = 320/401 (79%), Gaps = 23/401 (5%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALD 60
MVSDKEQLRDISSIGLKTVISELPLGS+AL ANVC+RITG+LS+AIEKQEDVSVQLEALD
Sbjct: 95 MVSDKEQLRDISSIGLKTVISELPLGSSALVANVCKRITGRLSSAIEKQEDVSVQLEALD 154
Query: 61 ILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLID 120
I++DLLSRFGALL +FH IL ALLPQLSSPRQAVRKRTI+ALSHL+ S N LY KL+D
Sbjct: 155 IMADLLSRFGALLITFHSTILAALLPQLSSPRQAVRKRTIIALSHLLTSSNNYLYNKLVD 214
Query: 121 FLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCL 180
LLEGL T + + RTYIQC A+ICRQAGHRF E IE+VMPLI++YS E+DDELRE+CL
Sbjct: 215 HLLEGLYTQTAKNVIRTYIQCIASICRQAGHRFGEQIEKVMPLIVQYSNEDDDELREYCL 274
Query: 181 QACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDG 240
QA E+FV RCPKEITPHI I E+C YITYDPNYNY+D+ + DG
Sbjct: 275 QAFESFVYRCPKEITPHINKIIEICWXYITYDPNYNYDDDMNDMS-------------DG 321
Query: 241 ED---------EGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLI 291
ED E + ++EYSDDDDMSWKVRRAAAKCLEA++++RR+L+ ++Y++VSP LI
Sbjct: 322 EDVMMEVEEDGEEDAEDEYSDDDDMSWKVRRAAAKCLEAVVSSRRELLPELYKIVSPALI 381
Query: 292 ARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKAL 351
RFKEREENVKSDIFHAY+ALL+ TR + + P DP+ M+ +D P+ LL QVP +VKA+
Sbjct: 382 LRFKEREENVKSDIFHAYIALLRQTRPATGV-PLDPDAMEDDDGPIALLQQQVPLIVKAV 440
Query: 352 QCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDV 392
Q++EKSI+TRQDC +LL+ELV LPG L+ +PALIP +
Sbjct: 441 HRQMKEKSIKTRQDCFSLLKELVLVLPGALSNHIPALIPGI 481
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350423911|ref|XP_003493628.1| PREDICTED: cullin-associated NEDD8-dissociated protein 1-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 266/401 (66%), Positives = 320/401 (79%), Gaps = 23/401 (5%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALD 60
MVSDKEQLRDISSIGLKTVISELPLGS+AL ANVC+RITG+LS+AIEKQEDVSVQLEALD
Sbjct: 95 MVSDKEQLRDISSIGLKTVISELPLGSSALVANVCKRITGRLSSAIEKQEDVSVQLEALD 154
Query: 61 ILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLID 120
I++DLLSRFGALL +FH IL ALLPQLSSPRQAVRKRTI+ALSHL+ S N LY KL+D
Sbjct: 155 IMADLLSRFGALLITFHSTILAALLPQLSSPRQAVRKRTIIALSHLLTSSNNYLYNKLVD 214
Query: 121 FLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCL 180
LLEGL T + + RTYIQC A+ICRQAGHRF E IE+VMPLI++YS E+DDELRE+CL
Sbjct: 215 HLLEGLYTQTAKNVIRTYIQCIASICRQAGHRFGEQIEKVMPLIVQYSNEDDDELREYCL 274
Query: 181 QACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDG 240
QA E+FV RCPKEITPHI I E+CL YITYDPNYNY+D+ E D
Sbjct: 275 QAFESFVYRCPKEITPHINKIIEICLVYITYDPNYNYDDDM-------------NEMSDA 321
Query: 241 ED---------EGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLI 291
ED E + ++EYSDDDDMSWKVRRAAAKCLEA++++RR+L+ ++Y++VSP LI
Sbjct: 322 EDIMMEVEEDGEEDAEDEYSDDDDMSWKVRRAAAKCLEAVVSSRRELLPELYKVVSPALI 381
Query: 292 ARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKAL 351
+RFKEREENVKSDIFHAY+ALL+ TR + + DP+ M+ +D P+ LL QVP +VKA+
Sbjct: 382 SRFKEREENVKSDIFHAYIALLRQTRPATGVA-LDPDAMEDDDGPIALLQQQVPLIVKAV 440
Query: 352 QCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDV 392
Q++EKSI+TRQDC +LL+ELV LPG L+ +PALIP +
Sbjct: 441 HRQMKEKSIKTRQDCFSLLKELVLVLPGALSNHIPALIPGI 481
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332022242|gb|EGI62557.1| Cullin-associated NEDD8-dissociated protein 1 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 269/392 (68%), Positives = 319/392 (81%), Gaps = 5/392 (1%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALD 60
MVSDKEQLRDISSIGLKTVISELP+GS+AL ANVCRR+T KLS+AIEKQEDVSVQLEALD
Sbjct: 95 MVSDKEQLRDISSIGLKTVISELPVGSSALVANVCRRVTNKLSSAIEKQEDVSVQLEALD 154
Query: 61 ILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLID 120
I++DLLSRFGALL SFH IL ALLPQLSSPRQAVRKRTIVALSHL+ S N LY KL+D
Sbjct: 155 IVADLLSRFGALLVSFHPTILAALLPQLSSPRQAVRKRTIVALSHLLTSSNNYLYNKLLD 214
Query: 121 FLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCL 180
LLEGL T + + RTYIQC A+ICRQAGHRF E IERVMPLI++YS E+DDELRE+CL
Sbjct: 215 HLLEGLQTQTAKNVIRTYIQCIASICRQAGHRFGEQIERVMPLIVQYSNEDDDELREYCL 274
Query: 181 QACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDG 240
QA E+FV RCPKEITPHI I E+CL YITYDPNYNY+D+ +G G M+ EE+
Sbjct: 275 QAFESFVYRCPKEITPHINKIIEICLMYITYDPNYNYDDDVNDF-SDGEGVAMEVEEDGD 333
Query: 241 EDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREEN 300
ED + EYSDDDDMSWKVRRAAAKCLEA++++RR+L+ ++Y+ VSP LIARFK +EEN
Sbjct: 334 EDAED---EYSDDDDMSWKVRRAAAKCLEAVVSSRRELLSELYKGVSPALIARFKGKEEN 390
Query: 301 VKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSI 360
VKSDIFHAY+ALL+ TR + + DP+ M+ +D P+ LL QVP +VKA+ Q++EKSI
Sbjct: 391 VKSDIFHAYIALLRQTRPTTGVA-LDPDAMEDDDGPISLLQQQVPLIVKAVHRQMKEKSI 449
Query: 361 RTRQDCLALLRELVQTLPGCLAPSLPALIPDV 392
+TRQDC +LL+ELV LPG L +PALIP +
Sbjct: 450 KTRQDCFSLLKELVLVLPGALTNHIPALIPGI 481
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307200142|gb|EFN80451.1| Cullin-associated NEDD8-dissociated protein 1 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 270/395 (68%), Positives = 322/395 (81%), Gaps = 8/395 (2%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALD 60
MVSDKEQLRDISSIGLKTVISELPLGS+AL AN+CRRITGKLS+AIEKQEDVSVQLEALD
Sbjct: 95 MVSDKEQLRDISSIGLKTVISELPLGSSALVANICRRITGKLSSAIEKQEDVSVQLEALD 154
Query: 61 ILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLID 120
I++DLLSRFGALL SFH IL AL PQLSSPRQAVRKRTIVALSHL+ S N LY KL+D
Sbjct: 155 IVADLLSRFGALLVSFHSTILNALSPQLSSPRQAVRKRTIVALSHLLTSSNNYLYNKLLD 214
Query: 121 FLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCL 180
LL+GL+T + RTYIQC A+ICRQAGHRF E IERVMPLI++YS E+DDELRE+CL
Sbjct: 215 QLLQGLSTQTIKNVIRTYIQCIASICRQAGHRFGEQIERVMPLIVQYSNEDDDELREYCL 274
Query: 181 QACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDG 240
QA E+FV RCPKEITPHI I E+CL YITYDPNYNY+D+ + GEG+ E +
Sbjct: 275 QAFESFVYRCPKEITPHINKIIEICLIYITYDPNYNYDDD---MNDFSDGEGV-VMEVEE 330
Query: 241 EDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFK---ER 297
+ E + ++EYSDDDDMSWKVRRAAAKCLEA++++RR+L+ D+Y+LVSP LI RFK +R
Sbjct: 331 DGEEDAEDEYSDDDDMSWKVRRAAAKCLEAVVSSRRELLPDLYKLVSPALICRFKGKYQR 390
Query: 298 EENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLRE 357
EENVKSDIFHAY+ALL+ TR + + P DP+ M+ +D P+ LL QVP +VKA+ Q++E
Sbjct: 391 EENVKSDIFHAYIALLRQTRPATGV-PLDPDAMEDDDGPISLLQQQVPLIVKAVHRQMKE 449
Query: 358 KSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDV 392
KSI+TRQDC +LL+ELV LPG L +PALIP +
Sbjct: 450 KSIKTRQDCFSLLKELVLVLPGALTNHIPALIPGI 484
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1827 | ||||||
| FB|FBgn0027568 | 1248 | Cand1 "Cullin-associated and n | 0.209 | 0.306 | 0.575 | 3.9e-277 | |
| UNIPROTKB|F1NHL2 | 1159 | CAND1 "Uncharacterized protein | 0.114 | 0.181 | 0.650 | 5.7e-274 | |
| UNIPROTKB|F1P624 | 1208 | CAND1 "Uncharacterized protein | 0.114 | 0.173 | 0.650 | 7.1e-274 | |
| UNIPROTKB|A7MBJ5 | 1230 | CAND1 "Cullin-associated NEDD8 | 0.114 | 0.170 | 0.650 | 1.1e-273 | |
| UNIPROTKB|Q86VP6 | 1230 | CAND1 "Cullin-associated NEDD8 | 0.114 | 0.170 | 0.650 | 1.1e-273 | |
| MGI|MGI:1261820 | 1230 | Cand1 "cullin associated and n | 0.114 | 0.170 | 0.650 | 2.2e-273 | |
| RGD|620479 | 1230 | Cand1 "cullin-associated and n | 0.114 | 0.170 | 0.650 | 2.5e-272 | |
| UNIPROTKB|E1C741 | 1239 | CAND2 "Uncharacterized protein | 0.114 | 0.169 | 0.635 | 3.6e-247 | |
| MGI|MGI:1914338 | 1235 | Cand2 "cullin-associated and n | 0.114 | 0.169 | 0.565 | 1.5e-220 | |
| RGD|620480 | 1273 | Cand2 "cullin-associated and n | 0.114 | 0.164 | 0.570 | 7.9e-220 |
| FB|FBgn0027568 Cand1 "Cullin-associated and neddylation-dissociated 1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1071 (382.1 bits), Expect = 3.9e-277, Sum P(4) = 3.9e-277
Identities = 226/393 (57%), Positives = 271/393 (68%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALD 60
M+S+ EQLRDISSIGLKTVI+ELP SN+LA NVC+RITGKLSTAIEK EDVSV+LE+LD
Sbjct: 96 MMSNTEQLRDISSIGLKTVIAELPQSSNSLAPNVCQRITGKLSTAIEK-EDVSVKLESLD 154
Query: 61 ILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLID 120
IL+DLLSRFG L FH IL AL+PQL+S RQAVRKRTIVALS L++ N Y +ID
Sbjct: 155 ILADLLSRFGEFLVPFHSTILKALMPQLASSRQAVRKRTIVALSFLLIQANSNAYNGVID 214
Query: 121 FLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCL 180
LL+GL + + RTYIQC A+ICRQAGHR HI+R M L+ +YS+ +DDELREFCL
Sbjct: 215 HLLDGLENPPNPAAIRTYIQCLASICRQAGHRLCNHIDRSMLLLSQYSQRDDDELREFCL 274
Query: 181 QACEAFVQRCPKEITPHIQSITELCLTYITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
QACEAFV RCP I PHI I ELCL YIT
Sbjct: 275 QACEAFVMRCPDAINPHIPMILELCLNYITYDPNYNYETDDGDTGNAMDTEDDEYVDSEE 334
Query: 241 XXXXXXXXXXXXXXXMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREEN 300
MSWKVRRAAAKCLE +I+TR++L+ D YR +SP LIARFKEREEN
Sbjct: 335 YSDDDD---------MSWKVRRAAAKCLEVLISTRQELVEDFYRSLSPALIARFKEREEN 385
Query: 301 VKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSI 360
VKSDIFHAY+ALLK TR + +D + MDQ P LL Q+P +VKA+Q +REKS+
Sbjct: 386 VKSDIFHAYVALLKNTRLTDDVA-NDHDSMDQVSGPTSLLIEQLPLIVKAIQPLMREKSM 444
Query: 361 RTRQDCLALLRELVQTLPGCLAPSLPALIPDVT 393
+TRQDC LLREL+ +LPG L P L +++P ++
Sbjct: 445 KTRQDCFLLLRELLNSLPGALGPYLDSIVPGIS 477
|
|
| UNIPROTKB|F1NHL2 CAND1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 709 (254.6 bits), Expect = 5.7e-274, Sum P(5) = 5.7e-274
Identities = 138/212 (65%), Positives = 173/212 (81%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGSN--ALAANVCRRITGKLSTAIEKQEDVSVQLEA 58
M+SDKEQLRDISSIGLKTVI ELP S+ ALAANVC++ITG+L++AI KQEDVSVQLEA
Sbjct: 24 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEA 83
Query: 59 LDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKL 118
LDI++D+LSR G LL +FH ILT LLPQL+SPR AVRKRTI+AL HLVMSC ++ L
Sbjct: 84 LDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNMVFVDL 143
Query: 119 IDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREF 178
I+ LL L+ N S ST RTYIQC AAI RQAGHR E++E+++PL++K+ +DDELRE+
Sbjct: 144 IEHLLTELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREY 203
Query: 179 CLQACEAFVQRCPKEITPHIQSITELCLTYIT 210
C+QA E+FV+RCPKE+ PH+ +I +CL Y+T
Sbjct: 204 CIQAFESFVRRCPKEVYPHVSTIINICLKYLT 235
|
|
| UNIPROTKB|F1P624 CAND1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 707 (253.9 bits), Expect = 7.1e-274, Sum P(5) = 7.1e-274
Identities = 138/212 (65%), Positives = 173/212 (81%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGSN--ALAANVCRRITGKLSTAIEKQEDVSVQLEA 58
M+SDKEQLRDISSIGLKTVI ELP S+ ALAANVC++ITG+L++AI KQEDVSVQLEA
Sbjct: 73 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEA 132
Query: 59 LDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKL 118
LDI++D+LSR G LL +FH ILT LLPQL+SPR AVRKRTI+AL HLVMSC ++ L
Sbjct: 133 LDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL 192
Query: 119 IDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREF 178
I+ LL L+ N S ST RTYIQC AAI RQAGHR E++E+++PL++K+ +DDELRE+
Sbjct: 193 IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREY 252
Query: 179 CLQACEAFVQRCPKEITPHIQSITELCLTYIT 210
C+QA E+FV+RCPKE+ PH+ +I +CL Y+T
Sbjct: 253 CIQAFESFVRRCPKEVYPHVSTIINICLKYLT 284
|
|
| UNIPROTKB|A7MBJ5 CAND1 "Cullin-associated NEDD8-dissociated protein 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 707 (253.9 bits), Expect = 1.1e-273, Sum P(5) = 1.1e-273
Identities = 138/212 (65%), Positives = 173/212 (81%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGSN--ALAANVCRRITGKLSTAIEKQEDVSVQLEA 58
M+SDKEQLRDISSIGLKTVI ELP S+ ALAANVC++ITG+L++AI KQEDVSVQLEA
Sbjct: 95 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEA 154
Query: 59 LDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKL 118
LDI++D+LSR G LL +FH ILT LLPQL+SPR AVRKRTI+AL HLVMSC ++ L
Sbjct: 155 LDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL 214
Query: 119 IDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREF 178
I+ LL L+ N S ST RTYIQC AAI RQAGHR E++E+++PL++K+ +DDELRE+
Sbjct: 215 IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREY 274
Query: 179 CLQACEAFVQRCPKEITPHIQSITELCLTYIT 210
C+QA E+FV+RCPKE+ PH+ +I +CL Y+T
Sbjct: 275 CIQAFESFVRRCPKEVYPHVSTIINICLKYLT 306
|
|
| UNIPROTKB|Q86VP6 CAND1 "Cullin-associated NEDD8-dissociated protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 707 (253.9 bits), Expect = 1.1e-273, Sum P(5) = 1.1e-273
Identities = 138/212 (65%), Positives = 173/212 (81%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGSN--ALAANVCRRITGKLSTAIEKQEDVSVQLEA 58
M+SDKEQLRDISSIGLKTVI ELP S+ ALAANVC++ITG+L++AI KQEDVSVQLEA
Sbjct: 95 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEA 154
Query: 59 LDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKL 118
LDI++D+LSR G LL +FH ILT LLPQL+SPR AVRKRTI+AL HLVMSC ++ L
Sbjct: 155 LDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL 214
Query: 119 IDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREF 178
I+ LL L+ N S ST RTYIQC AAI RQAGHR E++E+++PL++K+ +DDELRE+
Sbjct: 215 IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREY 274
Query: 179 CLQACEAFVQRCPKEITPHIQSITELCLTYIT 210
C+QA E+FV+RCPKE+ PH+ +I +CL Y+T
Sbjct: 275 CIQAFESFVRRCPKEVYPHVSTIINICLKYLT 306
|
|
| MGI|MGI:1261820 Cand1 "cullin associated and neddylation disassociated 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 707 (253.9 bits), Expect = 2.2e-273, Sum P(5) = 2.2e-273
Identities = 138/212 (65%), Positives = 173/212 (81%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGSN--ALAANVCRRITGKLSTAIEKQEDVSVQLEA 58
M+SDKEQLRDISSIGLKTVI ELP S+ ALAANVC++ITG+L++AI KQEDVSVQLEA
Sbjct: 95 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEA 154
Query: 59 LDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKL 118
LDI++D+LSR G LL +FH ILT LLPQL+SPR AVRKRTI+AL HLVMSC ++ L
Sbjct: 155 LDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL 214
Query: 119 IDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREF 178
I+ LL L+ N S ST RTYIQC AAI RQAGHR E++E+++PL++K+ +DDELRE+
Sbjct: 215 IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREY 274
Query: 179 CLQACEAFVQRCPKEITPHIQSITELCLTYIT 210
C+QA E+FV+RCPKE+ PH+ +I +CL Y+T
Sbjct: 275 CIQAFESFVRRCPKEVYPHVSTIINICLKYLT 306
|
|
| RGD|620479 Cand1 "cullin-associated and neddylation-dissociated 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 707 (253.9 bits), Expect = 2.5e-272, Sum P(5) = 2.5e-272
Identities = 138/212 (65%), Positives = 173/212 (81%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGSN--ALAANVCRRITGKLSTAIEKQEDVSVQLEA 58
M+SDKEQLRDISSIGLKTVI ELP S+ ALAANVC++ITG+L++AI KQEDVSVQLEA
Sbjct: 95 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEA 154
Query: 59 LDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKL 118
LDI++D+LSR G LL +FH ILT LLPQL+SPR AVRKRTI+AL HLVMSC ++ L
Sbjct: 155 LDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL 214
Query: 119 IDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREF 178
I+ LL L+ N S ST RTYIQC AAI RQAGHR E++E+++PL++K+ +DDELRE+
Sbjct: 215 IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREY 274
Query: 179 CLQACEAFVQRCPKEITPHIQSITELCLTYIT 210
C+QA E+FV+RCPKE+ PH+ +I +CL Y+T
Sbjct: 275 CIQAFESFVRRCPKEVYPHVSTIINICLKYLT 306
|
|
| UNIPROTKB|E1C741 CAND2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 678 (243.7 bits), Expect = 3.6e-247, Sum P(6) = 3.6e-247
Identities = 136/214 (63%), Positives = 167/214 (78%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGS--NALAANVCRRITGKLSTAIEKQEDVSVQLEA 58
M+SDKEQLRDISSIGLKTVISELP S + + ANVC++IT +L+ AI KQEDVSVQLEA
Sbjct: 95 MLSDKEQLRDISSIGLKTVISELPPASTGSTMTANVCKKITAQLTGAIGKQEDVSVQLEA 154
Query: 59 LDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKL 118
LDILSD+LSR G L SFH IL LLPQL+SPR AVRKR I+AL HLV++C+ +++L
Sbjct: 155 LDILSDMLSRLGGTLYSFHSSILNCLLPQLTSPRLAVRKRAIIALGHLVLTCSGNTFSEL 214
Query: 119 IDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREF 178
+ L+ L N+STST RTYIQC A I RQAGHR EH+E+++PLI++Y +DDELRE+
Sbjct: 215 TEHLIAELKKNESTSTTRTYIQCIAGISRQAGHRIGEHLEKIIPLIVQYCNVDDDELREY 274
Query: 179 CLQACEAFVQ--RCPKEITPHIQSITELCLTYIT 210
C QA E+FV+ RCPKEI PHI ++ LCL YIT
Sbjct: 275 CFQAFESFVRSDRCPKEIDPHIPNVMSLCLKYIT 308
|
|
| MGI|MGI:1914338 Cand2 "cullin-associated and neddylation-dissociated 2 (putative)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 608 (219.1 bits), Expect = 1.5e-220, Sum P(5) = 1.5e-220
Identities = 121/214 (56%), Positives = 162/214 (75%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGS--NALAANVCRRITGKLSTAIEKQEDVSVQLEA 58
M SDKEQLRDI+ IGLKTV+SELP + + LA NVCR+ITG+L++AI +QEDV+VQLEA
Sbjct: 95 MRSDKEQLRDIAGIGLKTVLSELPPAATGSGLAINVCRKITGQLTSAIAQQEDVAVQLEA 154
Query: 59 LDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKL 118
LDILSD+LSR GA L +FH +L LLPQLSSPR AVRKRT+VAL HL +C+ L+ +L
Sbjct: 155 LDILSDMLSRLGAPLGTFHASLLHCLLPQLSSPRLAVRKRTVVALGHLAAACSTDLFVEL 214
Query: 119 IDFLLEGLTTNK---STSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDEL 175
D L++ L + S + RT IQC ++ RQAGHR H++R++P++ ++ +DDEL
Sbjct: 215 ADHLVDRLPGPRAPASPAAIRTLIQCLGSVGRQAGHRLGAHLDRLVPMVEEFCNLDDDEL 274
Query: 176 REFCLQACEAFVQRCPKEITPHIQSITELCLTYI 209
RE CLQA EAF+++CPKE+ PH+ ++T LCL Y+
Sbjct: 275 RESCLQAFEAFLRKCPKEMDPHVPNVTSLCLQYM 308
|
|
| RGD|620480 Cand2 "cullin-associated and neddylation-dissociated 2 (putative)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 609 (219.4 bits), Expect = 7.9e-220, Sum P(5) = 7.9e-220
Identities = 122/214 (57%), Positives = 162/214 (75%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGS--NALAANVCRRITGKLSTAIEKQEDVSVQLEA 58
M SDKEQLRDI+ IGLKTV+SELP + + LA +VCR+ITG+L++AI +QEDV+VQLEA
Sbjct: 133 MRSDKEQLRDIAGIGLKTVLSELPPAATGSGLAISVCRKITGQLTSAIAQQEDVAVQLEA 192
Query: 59 LDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKL 118
LDILSD+LSR GA L +FH +L LLPQLSSPR AVRKRT+VAL HL +C+ L+ +L
Sbjct: 193 LDILSDMLSRLGAPLGTFHASLLHCLLPQLSSPRLAVRKRTVVALGHLAAACSTDLFVEL 252
Query: 119 IDFLLEGLTTNK---STSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDEL 175
D L++ L + S + RT IQC ++ RQAGHR H++R+MPL+ ++ +DDEL
Sbjct: 253 ADHLVDRLPGPRAPASPAAIRTLIQCLGSVGRQAGHRLGAHLDRLMPLVEEFCNLDDDEL 312
Query: 176 REFCLQACEAFVQRCPKEITPHIQSITELCLTYI 209
RE CLQA EAF+++CPKE+ PH+ ++T LCL Y+
Sbjct: 313 RESCLQAFEAFLRKCPKEMDPHVPNVTSLCLQYM 346
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1827 | |||
| pfam08623 | 169 | pfam08623, TIP120, TATA-binding protein interactin | 1e-62 | |
| pfam01602 | 522 | pfam01602, Adaptin_N, Adaptin N terminal region | 5e-05 | |
| pfam12253 | 76 | pfam12253, CAF1A, Chromatin assembly factor 1 subu | 7e-05 | |
| pfam13513 | 55 | pfam13513, HEAT_EZ, HEAT-like repeat | 0.001 |
| >gnl|CDD|219941 pfam08623, TIP120, TATA-binding protein interacting (TIP20) | Back alignment and domain information |
|---|
Score = 210 bits (537), Expect = 1e-62
Identities = 86/163 (52%), Positives = 117/163 (71%), Gaps = 6/163 (3%)
Query: 1598 PHIHILLPPVI----IIKTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTCLDRVDM 1653
P ++ LLP + + K LIREV+MGPFKH VDDGL++RK A+E MYTLLD+C R+D+
Sbjct: 5 PLLNELLPALYSETKVKKELIREVQMGPFKHVVDDGLELRKLAYETMYTLLDSCFSRLDI 64
Query: 1654 FEFLNHLESGLRDHYDIKMLTYLMLARLAQMTPAALLQRLERIVEPLRNTVTLKVKANSV 1713
EFL+ +E+GL D +DIKML LML++LA + P +L RL+R+ EPLR T++ KVK N+V
Sbjct: 65 PEFLDRIEAGLSDEHDIKMLALLMLSKLAVLAPEEVLARLDRLAEPLRKTLSKKVKENAV 124
Query: 1714 KQEYEKQDELKRSAMRAVAAL-LTIQDADKNPAL-NDFVATIK 1754
KQE EKQ EL RS +R V +L L + A +P + N+FV +K
Sbjct: 125 KQEIEKQQELIRSVLRLVVSLNLKLPSAQDSPVVWNEFVEQVK 167
|
TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription. Length = 169 |
| >gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 5e-05
Identities = 72/440 (16%), Positives = 151/440 (34%), Gaps = 88/440 (20%)
Query: 1085 FLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFA-------PFTSDIYQC 1137
FL+ + + D + + A+ +L + K R + + Q
Sbjct: 151 FLVPELKELLSDKDPGVVSAAVALLYEIRKNDRLYLNKLLPLLVRRLCNLLTVCNPWLQV 210
Query: 1138 TLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKA 1197
++RL Q+ +E +++ ++ + L++ N VK
Sbjct: 211 KILRLLTRYAPQDPREPK-----ELLEDILNLLQN-------------SNNAVLYEAVKT 252
Query: 1198 LTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLN 1257
+ + P ++ + LG L L+ L L+ +L +P A + +
Sbjct: 253 IIHLDPEP------ELIVLAVNALGRLLSSPDENLRYVALRNLNKILEKHPPA----VQH 302
Query: 1258 KVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADL 1317
+ + L ++ D+ I L LL + E I+ ++ ++ ++ +AD
Sbjct: 303 LDLI-IFCLKTDDDISIRLRALDLLYKLVD-------ESNVKEIVKELLKY--VSEIAD- 351
Query: 1318 KQVILNAFTPTSEEVKSAASYTLGSIAVGNLQ---QYVPFVLKEIENQPKR-QYLLLHSL 1373
E K +G +A + +L+ + ++ +
Sbjct: 352 ------------PEFKIKLVKAIGRLAEKFPTDAEWCIDVLLELLSLAGSYVVDEIVEVI 399
Query: 1374 KEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGK---LTLIDPSN 1430
++II +L++++ +L + + R LG+ L PS+
Sbjct: 400 RDII-------RKYPELREYILEHLCELL--EDIESPEARAAALWILGEYGELIPNSPSD 450
Query: 1431 LLPRLQESLKSNSALMRTTVLTA-VKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLD 1489
LL + E S +R +LTA VK ++ T D+ N ++ + + +
Sbjct: 451 LLRSILEVFVLESLKVRLALLTALVKLSL----TFPDE----EVQNLIVQVVLSLATQDS 502
Query: 1490 DDSE---RKVVKMLLRLLED 1506
D E R V LRLL
Sbjct: 503 SDLELRDRAV--EYLRLLSL 520
|
This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522 |
| >gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 7e-05
Identities = 22/46 (47%), Positives = 24/46 (52%), Gaps = 13/46 (28%)
Query: 391 DVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDM 436
D S AEW+EEE EG ED E E E+D E DDDDM
Sbjct: 41 DYDSDAEWEEEE--------EG-----EDLESEDEEDEEEDDDDDM 73
|
The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A. The A domain is uniquely required for the progression of S phase in mouse cells, independent of its ability to promote histone deposition but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints. Length = 76 |
| >gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.001
Identities = 16/54 (29%), Positives = 20/54 (37%)
Query: 53 SVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHL 106
V+ A L L LL +L ALLP L VR+ AL +
Sbjct: 2 EVREAAALALGALAGGGPELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55
|
The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1827 | |||
| KOG1824|consensus | 1233 | 100.0 | ||
| KOG1824|consensus | 1233 | 100.0 | ||
| KOG2023|consensus | 885 | 100.0 | ||
| PF08623 | 169 | TIP120: TATA-binding protein interacting (TIP20); | 100.0 | |
| KOG2171|consensus | 1075 | 100.0 | ||
| KOG2023|consensus | 885 | 100.0 | ||
| KOG2171|consensus | 1075 | 100.0 | ||
| KOG1241|consensus | 859 | 99.98 | ||
| KOG1241|consensus | 859 | 99.95 | ||
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 99.91 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.89 | |
| KOG0211|consensus | 759 | 99.86 | ||
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.85 | |
| KOG0211|consensus | 759 | 99.84 | ||
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 99.82 | |
| KOG1242|consensus | 569 | 99.82 | ||
| KOG0213|consensus | 1172 | 99.77 | ||
| KOG0915|consensus | 1702 | 99.74 | ||
| KOG0213|consensus | 1172 | 99.74 | ||
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 99.66 | |
| KOG0915|consensus | 1702 | 99.57 | ||
| KOG1242|consensus | 569 | 99.55 | ||
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 99.53 | |
| KOG1248|consensus | 1176 | 99.44 | ||
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.36 | |
| KOG1248|consensus | 1176 | 99.36 | ||
| KOG0212|consensus | 675 | 99.35 | ||
| KOG1991|consensus | 1010 | 99.25 | ||
| PRK09687 | 280 | putative lyase; Provisional | 99.17 | |
| KOG0212|consensus | 675 | 99.17 | ||
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.15 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.14 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.13 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.11 | |
| KOG1943|consensus | 1133 | 99.08 | ||
| PTZ00429 | 746 | beta-adaptin; Provisional | 99.08 | |
| KOG1943|consensus | 1133 | 99.0 | ||
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.84 | |
| KOG0166|consensus | 514 | 98.71 | ||
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 98.69 | |
| KOG1062|consensus | 866 | 98.68 | ||
| KOG0891|consensus | 2341 | 98.66 | ||
| KOG0166|consensus | 514 | 98.6 | ||
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 98.44 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 98.42 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 98.41 | |
| KOG2274|consensus | 1005 | 98.41 | ||
| KOG1992|consensus | 960 | 98.39 | ||
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 98.38 | |
| KOG2274|consensus | 1005 | 98.36 | ||
| KOG0891|consensus | 2341 | 98.3 | ||
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 98.28 | |
| KOG1991|consensus | 1010 | 98.27 | ||
| KOG1060|consensus | 968 | 98.25 | ||
| KOG1967|consensus | 1030 | 98.25 | ||
| KOG1240|consensus | 1431 | 98.22 | ||
| KOG1020|consensus | 1692 | 98.22 | ||
| KOG1060|consensus | 968 | 98.21 | ||
| KOG4224|consensus | 550 | 98.2 | ||
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 98.18 | |
| KOG1062|consensus | 866 | 98.12 | ||
| KOG1240|consensus | 1431 | 98.1 | ||
| KOG4224|consensus | 550 | 98.09 | ||
| KOG1059|consensus | 877 | 98.09 | ||
| KOG1967|consensus | 1030 | 98.04 | ||
| KOG1020|consensus | 1692 | 98.04 | ||
| KOG4535|consensus | 728 | 98.03 | ||
| KOG1059|consensus | 877 | 98.01 | ||
| KOG4535|consensus | 728 | 98.0 | ||
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 97.98 | |
| KOG1820|consensus | 815 | 97.94 | ||
| KOG2259|consensus | 823 | 97.9 | ||
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 97.89 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 97.89 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.84 | |
| KOG1992|consensus | 960 | 97.8 | ||
| KOG2032|consensus | 533 | 97.77 | ||
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 97.76 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.7 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 97.63 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.61 | |
| KOG1061|consensus | 734 | 97.57 | ||
| KOG2032|consensus | 533 | 97.54 | ||
| KOG2021|consensus | 980 | 97.54 | ||
| KOG2956|consensus | 516 | 97.52 | ||
| KOG2259|consensus | 823 | 97.49 | ||
| KOG4653|consensus | 982 | 97.45 | ||
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 97.44 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.39 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 97.38 | |
| KOG0414|consensus | 1251 | 97.38 | ||
| KOG1820|consensus | 815 | 97.37 | ||
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.26 | |
| KOG2956|consensus | 516 | 97.25 | ||
| KOG0168|consensus | 1051 | 97.22 | ||
| KOG1077|consensus | 938 | 97.19 | ||
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 97.19 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 97.18 | |
| KOG1078|consensus | 865 | 97.18 | ||
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 97.18 | |
| KOG2021|consensus | 980 | 97.16 | ||
| KOG4524|consensus | 1014 | 97.13 | ||
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 97.09 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 97.07 | |
| KOG0567|consensus | 289 | 97.06 | ||
| KOG1061|consensus | 734 | 97.05 | ||
| KOG4653|consensus | 982 | 96.91 | ||
| KOG4413|consensus | 524 | 96.86 | ||
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.78 | |
| KOG0946|consensus | 970 | 96.74 | ||
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 96.72 | |
| KOG0168|consensus | 1051 | 96.68 | ||
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 96.66 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 96.64 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 96.63 | |
| KOG2062|consensus | 929 | 96.56 | ||
| KOG2025|consensus | 892 | 96.54 | ||
| KOG1058|consensus | 948 | 96.54 | ||
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 96.49 | |
| KOG0413|consensus | 1529 | 96.49 | ||
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 96.44 | |
| KOG1822|consensus | 2067 | 96.29 | ||
| KOG1993|consensus | 978 | 96.28 | ||
| KOG0392|consensus | 1549 | 96.25 | ||
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 96.22 | |
| KOG0414|consensus | 1251 | 96.21 | ||
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 96.16 | |
| KOG1078|consensus | 865 | 96.14 | ||
| KOG4413|consensus | 524 | 96.14 | ||
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 96.14 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 96.11 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 96.11 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 96.11 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 96.07 | |
| KOG1993|consensus | 978 | 96.04 | ||
| KOG1243|consensus | 690 | 95.92 | ||
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 95.88 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 95.85 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 95.78 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 95.67 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 95.55 | |
| KOG0413|consensus | 1529 | 95.52 | ||
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 95.52 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 95.38 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 95.27 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 95.22 | |
| KOG0889|consensus | 3550 | 95.09 | ||
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 95.06 | |
| KOG1077|consensus | 938 | 95.02 | ||
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 94.98 | |
| KOG1058|consensus | 948 | 94.82 | ||
| KOG1525|consensus | 1266 | 94.79 | ||
| KOG0392|consensus | 1549 | 94.79 | ||
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 94.65 | |
| KOG2025|consensus | 892 | 94.55 | ||
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 94.49 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 94.46 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 94.33 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 94.23 | |
| KOG1243|consensus | 690 | 94.18 | ||
| KOG1525|consensus | 1266 | 94.12 | ||
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 94.02 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 93.99 | |
| KOG2549|consensus | 576 | 93.94 | ||
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 93.77 | |
| KOG2933|consensus | 334 | 93.33 | ||
| KOG1822|consensus | 2067 | 93.13 | ||
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 93.09 | |
| COG5095 | 450 | TAF6 Transcription initiation factor TFIID, subuni | 92.98 | |
| KOG0567|consensus | 289 | 92.77 | ||
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 92.7 | |
| KOG1949|consensus | 1005 | 92.62 | ||
| KOG2933|consensus | 334 | 92.58 | ||
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 92.4 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 92.03 | |
| smart00802 | 107 | UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. | 91.93 | |
| cd08050 | 343 | TAF6 TATA Binding Protein (TBP) Associated Factor | 91.92 | |
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 91.85 | |
| PF04931 | 784 | DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070 | 91.82 | |
| KOG2149|consensus | 393 | 91.68 | ||
| KOG2022|consensus | 982 | 91.67 | ||
| smart00802 | 107 | UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. | 91.64 | |
| PF12074 | 339 | DUF3554: Domain of unknown function (DUF3554); Int | 91.21 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 91.15 | |
| KOG2081|consensus | 559 | 90.94 | ||
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 90.84 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 90.81 | |
| KOG2549|consensus | 576 | 90.75 | ||
| KOG1517|consensus | 1387 | 90.64 | ||
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 90.6 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 89.85 | |
| KOG2137|consensus | 700 | 89.66 | ||
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 89.65 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 89.42 | |
| PF08767 | 319 | CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 | 89.29 | |
| KOG1293|consensus | 678 | 89.14 | ||
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 88.72 | |
| KOG2022|consensus | 982 | 88.64 | ||
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 88.57 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 88.29 | |
| PF01603 | 409 | B56: Protein phosphatase 2A regulatory B subunit ( | 88.19 | |
| KOG1789|consensus | 2235 | 88.11 | ||
| KOG1293|consensus | 678 | 87.73 | ||
| KOG2149|consensus | 393 | 87.71 | ||
| KOG0946|consensus | 970 | 87.55 | ||
| KOG2137|consensus | 700 | 87.4 | ||
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 87.39 | |
| KOG2005|consensus | 878 | 86.95 | ||
| KOG2160|consensus | 342 | 86.72 | ||
| KOG0803|consensus | 1312 | 86.28 | ||
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 85.82 | |
| KOG2160|consensus | 342 | 85.05 | ||
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 84.99 | |
| PF12054 | 441 | DUF3535: Domain of unknown function (DUF3535); Int | 84.81 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 84.67 | |
| COG5095 | 450 | TAF6 Transcription initiation factor TFIID, subuni | 84.28 | |
| PF12074 | 339 | DUF3554: Domain of unknown function (DUF3554); Int | 84.07 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 83.66 | |
| KOG2062|consensus | 929 | 83.5 | ||
| KOG0803|consensus | 1312 | 83.32 | ||
| PF08623 | 169 | TIP120: TATA-binding protein interacting (TIP20); | 83.29 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 82.62 | |
| PF14225 | 262 | MOR2-PAG1_C: Cell morphogenesis C-terminal | 82.23 | |
| KOG1949|consensus | 1005 | 81.77 | ||
| cd08050 | 343 | TAF6 TATA Binding Protein (TBP) Associated Factor | 80.94 |
| >KOG1824|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-181 Score=1624.57 Aligned_cols=1027 Identities=59% Similarity=0.945 Sum_probs=941.4
Q ss_pred CCCchHHHHHHHHHHHHHHHhhCCCCCh-hhhhhHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHhhccCCCCchhH
Q psy14676 1 MVSDKEQLRDISSIGLKTVISELPLGSN-ALAANVCRRITGKLSTAIEKQEDVS-VQLEALDILSDLLSRFGALLPSFHF 78 (1827)
Q Consensus 1 ~~~~~~~~Rdi~~~~Lktvi~~lp~~~~-~~~~~v~~~L~P~Ll~~l~~~~~~~-v~~~al~iL~~l~~~~~~~l~~~~~ 78 (1827)
|+++|||.|||++++|||+|+++|+.++ .++++||+.++|+|.+++..+++.. ++.++||+|++++.+||..+.++|.
T Consensus 94 ~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~ 173 (1233)
T KOG1824|consen 94 MLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHL 173 (1233)
T ss_pred hccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHH
Confidence 7899999999999999999999997444 7888999999999999997655544 9999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHH
Q psy14676 79 VILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIE 158 (1827)
Q Consensus 79 ~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~ 158 (1827)
.++.+++++|++++..|||+|+.||++++.+++...+..++++++.+|.+.......|++++|+++++|+.|++|+.|++
T Consensus 174 ~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~ 253 (1233)
T KOG1824|consen 174 SILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLD 253 (1233)
T ss_pred HHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccc
Confidence 99999999999999999999999999999999999999999999999988777888999999999999999999999999
Q ss_pred HHHHHHHhhc---ccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCC
Q psy14676 159 RVMPLILKYS---REEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDT 235 (1827)
Q Consensus 159 ~i~p~l~~~~---~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~ 235 (1827)
.++|++.+++ +.++||+||+|+||||.|+.+||+++.||.|.++.+|+.|++|||||+|+++||+ ++|..
T Consensus 254 ~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDe-------d~~~~ 326 (1233)
T KOG1824|consen 254 KIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDE-------DAMFL 326 (1233)
T ss_pred hhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccch-------hhhhh
Confidence 9999999999 7889999999999999999999999999999999999999999999998875432 12221
Q ss_pred cccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhh
Q psy14676 236 EEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKG 315 (1827)
Q Consensus 236 ~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~ 315 (1827)
|| .||||.++||+||||+||||||+||||+.+++.++.+++..+|+.+.|.++.||+||||+||.+++.+|.+++++
T Consensus 327 ed---~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~q 403 (1233)
T KOG1824|consen 327 ED---EEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQ 403 (1233)
T ss_pred hc---cccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 11 223334689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCCCCCCCCCCh--HhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHH
Q psy14676 316 TRTFSPLTPSDPNQMDQEDSP--LCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVT 393 (1827)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~--~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~ 393 (1827)
++....| ..+++.|++++.+ ..++..++|.||+++.++|++++.++|++||.+|.++..++||++++|++.++|+|.
T Consensus 404 t~~~~~~-~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~ 482 (1233)
T KOG1824|consen 404 TRPVIEV-LADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGII 482 (1233)
T ss_pred CCCCccc-ccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhh
Confidence 9876666 2345566664433 478999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHh
Q psy14676 394 SVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIAR 473 (1827)
Q Consensus 394 ~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~ 473 (1827)
..+.|++.
T Consensus 483 ~~l~DkSs------------------------------------------------------------------------ 490 (1233)
T KOG1824|consen 483 YSLNDKSS------------------------------------------------------------------------ 490 (1233)
T ss_pred hhcCCccc------------------------------------------------------------------------
Confidence 88732100
Q ss_pred hcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHh
Q psy14676 474 FKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLREL 553 (1827)
Q Consensus 474 ~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~ 553 (1827)
. .+
T Consensus 491 ----------------------------s-------------s~------------------------------------ 493 (1233)
T KOG1824|consen 491 ----------------------------S-------------SN------------------------------------ 493 (1233)
T ss_pred ----------------------------h-------------HH------------------------------------
Confidence 0 00
Q ss_pred hcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCccccccccc
Q psy14676 554 MTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPI 633 (1827)
Q Consensus 554 ~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~ 633 (1827)
+
T Consensus 494 ------------------------------------------------------------------------~------- 494 (1233)
T KOG1824|consen 494 ------------------------------------------------------------------------L------- 494 (1233)
T ss_pred ------------------------------------------------------------------------H-------
Confidence 0
Q ss_pred ccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCcc
Q psy14676 634 LTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNAL 713 (1827)
Q Consensus 634 l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~ 713 (1827)
|.- ++
T Consensus 495 -------------------ki~------~L-------------------------------------------------- 499 (1233)
T KOG1824|consen 495 -------------------KID------AL-------------------------------------------------- 499 (1233)
T ss_pred -------------------HHH------HH--------------------------------------------------
Confidence 000 00
Q ss_pred chhhhhhhhHHHhhhhcccccchhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHH
Q psy14676 714 VEPAAASILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAI 793 (1827)
Q Consensus 714 ~~~~~~~llp~ll~l~~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~ 793 (1827)
.|.
T Consensus 500 ------------------------------~fl----------------------------------------------- 502 (1233)
T KOG1824|consen 500 ------------------------------VFL----------------------------------------------- 502 (1233)
T ss_pred ------------------------------HHH-----------------------------------------------
Confidence 000
Q ss_pred HhhhhhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcCCCChhhH
Q psy14676 794 TVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTN 873 (1827)
Q Consensus 794 ~~~~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~vr 873 (1827)
T Consensus 503 -------------------------------------------------------------------------------- 502 (1233)
T KOG1824|consen 503 -------------------------------------------------------------------------------- 502 (1233)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHH
Q psy14676 874 RTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQ 953 (1827)
Q Consensus 874 ~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~ 953 (1827)
T Consensus 503 -------------------------------------------------------------------------------- 502 (1233)
T KOG1824|consen 503 -------------------------------------------------------------------------------- 502 (1233)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCC
Q psy14676 954 VILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPS 1033 (1827)
Q Consensus 954 ~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~ 1033 (1827)
T Consensus 503 -------------------------------------------------------------------------------- 502 (1233)
T KOG1824|consen 503 -------------------------------------------------------------------------------- 502 (1233)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHH
Q psy14676 1034 NLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFV 1113 (1827)
Q Consensus 1034 ~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv 1113 (1827)
...+.+|.+..|+|| ++.+.|++..+++|+||+|++||+.++++++
T Consensus 503 ------------------------~~~L~s~~p~~fhp~----------~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lv 548 (1233)
T KOG1824|consen 503 ------------------------YSALISHPPEVFHPH----------LSALSPPVVAAVGDPFYKISAEALLVCQQLV 548 (1233)
T ss_pred ------------------------HHHHhcCChhhcccc----------hhhhhhHHHHHhcCchHhhhHHHHHHHHHHH
Confidence 001123344556777 8889999999999999999999999999999
Q ss_pred HHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHH
Q psy14676 1114 KVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLT 1193 (1827)
Q Consensus 1114 ~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~ 1193 (1827)
++++|...+.+.+..||+.++|...+.+|.++|.|+|||++||.|+|+++.++|+.++.+++.+||+|++|++||.||++
T Consensus 549 kvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~ 628 (1233)
T KOG1824|consen 549 KVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEITRLT 628 (1233)
T ss_pred HHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHH
Confidence 99999876667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChh
Q psy14676 1194 TVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLH 1273 (1827)
Q Consensus 1194 av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~ 1273 (1827)
|+||++.|+.++..+++.|.+.++++++++|+||++|.+|.+++.++..|+++++..++.+.++.++.+++++++++|+|
T Consensus 629 AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlh 708 (1233)
T KOG1824|consen 629 AVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLH 708 (1233)
T ss_pred HHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCccch---------------h-----h------------------------------------
Q psy14676 1274 IAQLTLTLLTSIAKIQPNALVE---------------P-----A------------------------------------ 1297 (1827)
Q Consensus 1274 l~~~al~~L~~l~~~~~~~~~~---------------~-----~------------------------------------ 1297 (1827)
+.+.++.+|+.++...|..... | +
T Consensus 709 vt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~ 788 (1233)
T KOG1824|consen 709 VTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQV 788 (1233)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCccccc
Confidence 9999999999999987743322 0 0
Q ss_pred -----------H---------------------------------------HhhhhhcccccCCCchhhHHHHHHHhcCC
Q psy14676 1298 -----------A---------------------------------------ASILPQIGRHTDLTSVADLKQVILNAFTP 1327 (1827)
Q Consensus 1298 -----------i---------------------------------------~~~lgeiG~~~~~~~~~~l~~~~l~~~~~ 1327 (1827)
+ ...+||+|++.+++.++.+..+++++|++
T Consensus 789 ~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~s 868 (1233)
T KOG1824|consen 789 TDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNS 868 (1233)
T ss_pred ccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCC
Confidence 0 01148999999988888999999999999
Q ss_pred CCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhcCchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcC
Q psy14676 1328 TSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIENQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCEC 1407 (1827)
Q Consensus 1328 ~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~ 1407 (1827)
+++|||.||++|||++++||++.|||+|++++..++++||++||+|+|+|... + .+.++|+++.||+.|+++|++
T Consensus 869 p~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~--s---vd~~~~~v~~IW~lL~k~cE~ 943 (1233)
T KOG1824|consen 869 PSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSA--S---VDGLKPYVEKIWALLFKHCEC 943 (1233)
T ss_pred ChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHh--c---cchhhhhHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999853 3 457899999999999999999
Q ss_pred CchhHHHHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccc
Q psy14676 1408 QEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIK 1487 (1827)
Q Consensus 1408 ~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~ 1487 (1827)
.+||+|+++|||||||+.++|+.++|+|+..+.++.+..|.++++|+||++++.++.+|+.++
T Consensus 944 ~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk----------------- 1006 (1233)
T KOG1824|consen 944 AEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK----------------- 1006 (1233)
T ss_pred chhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-----------------
Confidence 999999999999999999999999999999999999999999999999999999999999885
Q ss_pred cChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhh
Q psy14676 1488 LDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCL 1567 (1827)
Q Consensus 1488 ~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s 1567 (1827)
+-+..|+.+++|||+ +|||+|+++|||
T Consensus 1007 -------~~ig~fl~~~~dpDl----------------------------------------------~VrrvaLvv~nS 1033 (1233)
T KOG1824|consen 1007 -------QQIGDFLKLLRDPDL----------------------------------------------EVRRVALVVLNS 1033 (1233)
T ss_pred -------HHHHHHHHHHhCCch----------------------------------------------hHHHHHHHHHHH
Confidence 566999999999999 999999999999
Q ss_pred hhccCCCCcccchhhhhhhhcccCCcccccccccccCCcchhccccceeeeccCcccccccCchhhhhHHHHHHHHHhhh
Q psy14676 1568 GDRNSSSNMKIDTLAFTHTLLTTHPPAVFHPHIHILLPPVIIIKTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTC 1647 (1827)
Q Consensus 1568 ~a~~~p~li~~~~~~~~~~~l~~llp~l~~~~~~~~~~~t~~~~~lir~v~mgpfkh~vddgl~~Rk~a~e~~~~ll~~~ 1647 (1827)
++||||++| |++|+.++|.+| .||+||+||||||+||||||+|||||++||+||||||||||+|
T Consensus 1034 aahNKpslI--------rDllpeLLp~Ly--------~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdsc 1097 (1233)
T KOG1824|consen 1034 AAHNKPSLI--------RDLLPELLPLLY--------SETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSC 1097 (1233)
T ss_pred HHccCHhHH--------HHHHHHHHHHHH--------HhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhh
Confidence 999999999 999999999999 9999999999999999999999999999999999999999999
Q ss_pred hccCChHHHHHHHHhhccchhhHHHHHHHHHHHHHhhChHHHHHHHHHhhHHHHhhhccccccchhhHHHHHHHHHHHHH
Q psy14676 1648 LDRVDMFEFLNHLESGLRDHYDIKMLTYLMLARLAQMTPAALLQRLERIVEPLRNTVTLKVKANSVKQEYEKQDELKRSA 1727 (1827)
Q Consensus 1648 ~~~~~~~~~~~~~~~gl~d~~dik~l~~~~l~~l~~~~p~~~~~~l~~l~~~~~~~l~~~~k~~~~kqe~e~~~e~~~s~ 1727 (1827)
++++|+.+|+++++.||.|||||||+||+||.||+..||+.|++|+|+++||||+||+.|+|+|+||||+||++|++|||
T Consensus 1098 ld~~dit~Fl~~~~~GL~DhydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSA 1177 (1233)
T KOG1824|consen 1098 LDRLDITEFLNHVEDGLEDHYDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSA 1177 (1233)
T ss_pred hhhccHHHHHHHHHhhcchhhHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhcccccchHhHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCChhHHHHHHHHhCCchHHHHHHHHhcccCCCCCCCCccccCC
Q psy14676 1728 MRAVAALLTIQDADKNPALNDFVATIKNSPELQTIFDSMQKDSSLSNQQDPHMMDMN 1784 (1827)
Q Consensus 1728 ~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1784 (1827)
||++.+|.+||++++||+|.+|..+|+++|+|..+|+.|+||+.++. .+.+.||++
T Consensus 1178 lRav~~L~~ip~v~~np~~~df~sqik~~pel~~~fe~I~kes~t~~-~~~~~m~~s 1233 (1233)
T KOG1824|consen 1178 LRAVAALLTIPEVEKNPQFSDFESQIKSNPELAAIFESIQKESKTTI-KTLESMDTS 1233 (1233)
T ss_pred HHHHHHHhcccccccChHHHHHHHHhhcChhHHHHHHHHHHHhhccc-cccccccCC
Confidence 99999999999999999999999999999999999999999998853 245789874
|
|
| >KOG1824|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-49 Score=478.60 Aligned_cols=880 Identities=28% Similarity=0.457 Sum_probs=645.4
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHH
Q psy14676 5 KEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTAL 84 (1827)
Q Consensus 5 ~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~l 84 (1827)
.+-+|.=+..||.-+....|.. ...+++-.|+.++.+..........+.+|+.++..-|.-++.|.+.+.+.+
T Consensus 187 R~aVrKkai~~l~~la~~~~~~-------ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v 259 (1233)
T KOG1824|consen 187 RLAVRKKAITALGHLASSCNRD-------LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLV 259 (1233)
T ss_pred HHHHHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHH
Confidence 3456777777877777777664 478888999999976666666678899999999999999988889999999
Q ss_pred hhhc---CCCCHHHHHHHHHHHHHHHHhhchhHH---HHHHHHHHHhcc----------C--------------------
Q psy14676 85 LPQL---SSPRQAVRKRTIVALSHLVMSCNLQLY---TKLIDFLLEGLT----------T-------------------- 128 (1827)
Q Consensus 85 l~~L---~~~~~~VRk~Ai~aL~~l~~~~~~~~~---~~l~~~ll~~L~----------~-------------------- 128 (1827)
.+.. +..+...|+..++|++.|...|+.+.. ..++..+++.+. +
T Consensus 260 ~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYs 339 (1233)
T KOG1824|consen 260 ADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYS 339 (1233)
T ss_pred HHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccc
Confidence 9998 445679999999999999999998753 334444444431 0
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHH
Q psy14676 129 ---NKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELC 205 (1827)
Q Consensus 129 ---~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~l 205 (1827)
+-++.+||++..|+.++..+..+.+-..+..+-|.++.-+++..+.++--.+.++..+.+..+.
T Consensus 340 DDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~------------- 406 (1233)
T KOG1824|consen 340 DDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRP------------- 406 (1233)
T ss_pred cccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC-------------
Confidence 0124699999999999999998888888899999999888876666653333333333322211
Q ss_pred HHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHh
Q psy14676 206 LTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRL 285 (1827)
Q Consensus 206 l~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~ 285 (1827)
-.+.++ |.| .|+.. +--+ ..|-.++.. ..
T Consensus 407 -----~~~~~~--d~d----------~~e~~-----------g~~s----~~~~L~~~~-------------------~~ 435 (1233)
T KOG1824|consen 407 -----VIEVLA--DND----------AMEQG-----------GTPS----DLSMLSDQV-------------------PL 435 (1233)
T ss_pred -----Cccccc--Cch----------hhhcc-----------CCcc----chHHHHhhh-------------------HH
Confidence 011111 111 11110 0000 012222211 12
Q ss_pred hhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHH
Q psy14676 286 VSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQD 365 (1827)
Q Consensus 286 v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a 365 (1827)
++..+...+++..-.-|...+.-+.+++.. .+..+.++++.++|.+...|.|++..--
T Consensus 436 iVkai~~qlr~ks~kt~~~cf~lL~eli~~--------------------lp~~l~~~~~slvpgI~~~l~DkSsss~-- 493 (1233)
T KOG1824|consen 436 IVKAIQKQLREKSVKTRQGCFLLLTELINV--------------------LPGALAQHIPSLVPGIIYSLNDKSSSSN-- 493 (1233)
T ss_pred HHHHHHHHHhhccccchhhHHHHHHHHHHh--------------------CcchhhhcccccchhhhhhcCCccchHH--
Confidence 222333333332223455666666666632 1235678899999999999999863210
Q ss_pred HHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHH
Q psy14676 366 CLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAA 445 (1827)
Q Consensus 366 ~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~ 445 (1827)
.+..++
T Consensus 494 --------------------------------------------------------------------------~ki~~L 499 (1233)
T KOG1824|consen 494 --------------------------------------------------------------------------LKIDAL 499 (1233)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 122344
Q ss_pred HHHHHHHHHhh-hhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchh
Q psy14676 446 KCLEAIIATRR-DLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQV 524 (1827)
Q Consensus 446 ~~l~~l~~~~~-~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~ 524 (1827)
.++......++ +.|.|+++.+.|++..+.+|.++.|-.+|+.++++++++.. |..+. +....++ .+....
T Consensus 500 ~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvir---pl~~~----~~~d~~~--~v~~m~ 570 (1233)
T KOG1824|consen 500 VFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIR---PLQPP----SSFDASP--YVKTMY 570 (1233)
T ss_pred HHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhc---ccCCC----ccCCCCh--hHHHHH
Confidence 55555555566 89999999999999999999999999999999999999876 34221 1111122 245556
Q ss_pred hHHHHHHHHHhhhhhhhhHH-hHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhH
Q psy14676 525 PSLVKALQCQLREKSIRTRQ-DCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEV 603 (1827)
Q Consensus 525 ~~~~~~l~~~l~~~~~~~~~-~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV 603 (1827)
.++++++.....|..+|.+. .|++.+...++|... .-.+.+++.+..-++....
T Consensus 571 ~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~-----------------------~eL~~~L~il~eRl~nEiT-- 625 (1233)
T KOG1824|consen 571 DCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLG-----------------------NELPRTLPILLERLGNEIT-- 625 (1233)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhh-----------------------hhhHHHHHHHHHHHhchhH--
Confidence 67777777777777777666 677766655555322 2335566666665654332
Q ss_pred HHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHh
Q psy14676 604 QNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVEL 683 (1827)
Q Consensus 604 ~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~ 683 (1827)
. + ..+|+++.|+.+|+.+|+++.+.+++|++.+++||++|.+|++++++++.++.+|+.+++..+++.|+.++
T Consensus 626 -R-----l-~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el 698 (1233)
T KOG1824|consen 626 -R-----L-TAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVEL 698 (1233)
T ss_pred -H-----H-HHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHh
Confidence 1 1 24578888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhhhhHHHhhhhcccccchhhhhhHHHHHHHHHhhhCCCCCHHHHH
Q psy14676 684 APLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELL 763 (1827)
Q Consensus 684 ~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~llp~ll~l~~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll 763 (1827)
|.+++++|.|+++.|+.+++..+..+|...+. ..+.+++.++.+++||+.||+++.+++.||.++|.+..+..+|..++
T Consensus 699 ~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~-~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~ 777 (1233)
T KOG1824|consen 699 PPLISESDLHVTQLAVAFLTTLAIIQPSSLLK-ISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLL 777 (1233)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcccHHHHH-HhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHH
Confidence 99999999999999999999999888875544 77899999999999999999999999999999999988887899999
Q ss_pred HHhhccccccc--hhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHH
Q psy14676 764 NMLIAPVMTGT--ALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVAL 841 (1827)
Q Consensus 764 ~~L~~~~~~~~--~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL 841 (1827)
+.+..|+..+. .+||||++++++|++.+|.....++.+.+.++++++.+ +.+
T Consensus 778 s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s--~~s------------------------ 831 (1233)
T KOG1824|consen 778 SLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQS--PKS------------------------ 831 (1233)
T ss_pred HHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhC--CCC------------------------
Confidence 99999997644 49999999999999999999998888888888888775 111
Q ss_pred HHHHhhhcHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHH
Q psy14676 842 SHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQAC 921 (1827)
Q Consensus 842 ~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Al 921 (1827)
++.+|-+|+-.
T Consensus 832 --------------------------------------------------------------------~~~ikvfa~Ls- 842 (1233)
T KOG1824|consen 832 --------------------------------------------------------------------SDSIKVFALLS- 842 (1233)
T ss_pred --------------------------------------------------------------------chhHHHHHHhh-
Confidence 11122222111
Q ss_pred HHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhH----------------------
Q psy14676 922 EAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAE---------------------- 979 (1827)
Q Consensus 922 e~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~---------------------- 979 (1827)
+++++++.+.++..++..++++.|+..+|++|.+|++++|+...
T Consensus 843 --------------lGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~Qy 908 (1233)
T KOG1824|consen 843 --------------LGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQY 908 (1233)
T ss_pred --------------hhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHH
Confidence 67778888888788888889999999999999999999987542
Q ss_pred --------hhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHhccCChhhH
Q psy14676 980 --------IISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMR 1051 (1827)
Q Consensus 980 --------~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~~~~R 1051 (1827)
.++|. ..+.+.++.+.+|..|++++++.|+++|++++||||+|+...|+.++|.+...+.++.+.+|
T Consensus 909 LLLhSlkevi~~~-----svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~r 983 (1233)
T KOG1824|consen 909 LLLHSLKEVIVSA-----SVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTR 983 (1233)
T ss_pred HHHHHHHHHHHHh-----ccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchh
Confidence 12233 23467889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhH
Q psy14676 1052 TTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFT 1131 (1827)
Q Consensus 1052 ~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l 1131 (1827)
..+++++++..+..+..+.++ +.+-+..++.+
T Consensus 984 s~vvsavKfsisd~p~~id~~----------lk~~ig~fl~~-------------------------------------- 1015 (1233)
T KOG1824|consen 984 SSVVSAVKFSISDQPQPIDPL----------LKQQIGDFLKL-------------------------------------- 1015 (1233)
T ss_pred hhhhheeeeeecCCCCccCHH----------HHHHHHHHHHH--------------------------------------
Confidence 999998887777666666555 33333333333
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHHHHhcCCCccccc
Q psy14676 1132 SDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIAASPLRIDLR 1211 (1827)
Q Consensus 1132 ~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~av~al~~ia~~~~~~dl~ 1211 (1827)
+. |.|.+||+.|+.++...+++-+..+.+-++++||.+.+.-+ .|..-+| .++..
T Consensus 1016 ----------~~--dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTk---vrkelIr----------eVeMG 1070 (1233)
T KOG1824|consen 1016 ----------LR--DPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETK---VRKELIR----------EVEMG 1070 (1233)
T ss_pred ----------Hh--CCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhh---hhHhhhh----------hhccc
Confidence 33 66667777777777777766666666667777777764311 1433333 24456
Q ss_pred hhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCC
Q psy14676 1212 PILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPN 1291 (1827)
Q Consensus 1212 p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~ 1291 (1827)
||-+.+ |+.-.+|+++++|+.+|+...-+.++. ...+..+...+.|. ..++...+.+|..++.-+|.
T Consensus 1071 PFKH~V---------DdgLd~RKaaFEcmytLLdscld~~di---t~Fl~~~~~GL~Dh-ydiKmlt~l~l~rLa~lcPs 1137 (1233)
T KOG1824|consen 1071 PFKHTV---------DDGLDLRKAAFECMYTLLDSCLDRLDI---TEFLNHVEDGLEDH-YDIKMLTFLMLARLADLCPS 1137 (1233)
T ss_pred Cccccc---------cchHHHHHHHHHHHHHHHHhhhhhccH---HHHHHHHHhhcchh-hHHHHHHHHHHHHHHhhCcH
Confidence 665432 344578999999999999986665553 33455556778877 77888899999999988886
Q ss_pred cc
Q psy14676 1292 AL 1293 (1827)
Q Consensus 1292 ~~ 1293 (1827)
.+
T Consensus 1138 ~V 1139 (1233)
T KOG1824|consen 1138 AV 1139 (1233)
T ss_pred HH
Confidence 43
|
|
| >KOG2023|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=469.21 Aligned_cols=793 Identities=18% Similarity=0.230 Sum_probs=578.2
Q ss_pred hhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHHHHH
Q psy14676 583 DSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDT 662 (1827)
Q Consensus 583 ~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~ 662 (1827)
+...++..+|..++ .+++++|+.+...+-.+- . --||-.|| +=+|..+-.+.....-.++|.++|+
T Consensus 10 ~~l~ql~~lLk~s~-Spn~~~~~~~~~~leq~~----~------~pdfnnYL---~~IL~~~~~~d~~~Rs~aGLlLKNn 75 (885)
T KOG2023|consen 10 QGLQQLAQLLKNSQ-SPNSETRNNVQEKLEQFN----L------FPDFNNYL---IYILIRAKSEDVPTRSLAGLLLKNN 75 (885)
T ss_pred HHHHHHHHHHHhcc-CCChHHHHHHHHHHHHHh----c------ccchhcee---eEEEecccccchhHHHHhhhhHhcc
Confidence 34445555544444 467888988777554431 1 13444555 6677777666666777889999999
Q ss_pred HHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhhhhHHHhhhhcccc--cchhhhh
Q psy14676 663 LLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPL--LQGAALT 740 (1827)
Q Consensus 663 l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~llp~ll~l~~s~~--~~~~al~ 740 (1827)
+..+|. .+++....+++.+..+.++|+++.|+++.+.++++|+... .. ..|++++|.+.++++|+. .+++|+.
T Consensus 76 vr~~~~-~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~---~~-~~wpelLp~L~~~L~s~d~n~~EgA~~ 150 (885)
T KOG2023|consen 76 VRGHYN-SIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTG---GL-QHWPELLPQLCELLDSPDYNTCEGAFG 150 (885)
T ss_pred cccccc-CCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeeccc---cc-ccchhHHHHHHHHhcCCcccccchhHH
Confidence 988877 4677899999999999999999999999999999988632 22 379999999999998777 4689999
Q ss_pred hHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchhH
Q psy14676 741 SMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQV 820 (1827)
Q Consensus 741 ~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~ 820 (1827)
+|.+++ ++..+.++.-.. .++....++++++++++.. ++
T Consensus 151 AL~KIc----------EDsa~~lds~~~---------------------------~rpl~~mipkfl~f~~h~s---pk- 189 (885)
T KOG2023|consen 151 ALQKIC----------EDSAQFLDSDVL---------------------------TRPLNIMIPKFLQFFKHPS---PK- 189 (885)
T ss_pred HHHHHH----------hhhHHHHhhhcc---------------------------cCchHHhHHHHHHHHhCCC---hh-
Confidence 999985 556666644220 1122234568999998732 22
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHh--hhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhh
Q psy14676 821 TIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLE--GLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERV 898 (1827)
Q Consensus 821 ~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~--~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~i 898 (1827)
+|+-|+.|+++++..-++.++.++..++.. .+.+|.++.||+.+|.+++.|-++-++++.||++.|
T Consensus 190 ------------iRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~I 257 (885)
T KOG2023|consen 190 ------------IRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNI 257 (885)
T ss_pred ------------HHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHH
Confidence 999999999999999999999999999888 467899999999999999999999999999999999
Q ss_pred HHHHHHhhcccchHHHHHHHHHHHHHHhhC-----CCcccccccccccc----CCcchhhhhHHHHHh------hcCCCh
Q psy14676 899 MPLILKYSREEDDELREFCLQACEAFVQRC-----PKEITPHIQSIGRH----TDLTSVADLKQVILN------AFTPTS 963 (1827)
Q Consensus 899 lP~ll~~l~d~~~~vre~al~Ale~~v~~~-----~~~i~p~l~~i~~~----~~~s~~~~L~~~l~~------~~~~~~ 963 (1827)
+.++++..+|.|++| |++|||+|...+ +..+.||++.+++. +.|+ +...+|++ ...+++
T Consensus 258 veyML~~tqd~dE~V---ALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ys---d~D~~LL~~~eeD~~vpDre 331 (885)
T KOG2023|consen 258 VEYMLQRTQDVDENV---ALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYS---DDDIILLKNNEEDESVPDRE 331 (885)
T ss_pred HHHHHHHccCcchhH---HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccc---cccHHHhcCccccccCCchh
Confidence 999999999999985 899999999864 45588999887762 2222 11122222 122356
Q ss_pred HhHhhh--hhccc--ch------------hh--Hhhhhc--ccccchhhhhhhhHH-HHHHHHHhhhhccccchhhHHHH
Q psy14676 964 EEVKSA--ASYTL--GS------------IA--EIISWQ--STSTSGVAQLQQFVP-AIWAQLFLHCECQEEGTRNVVAE 1022 (1827)
Q Consensus 964 e~~r~~--~~~~l--g~------------~~--~~i~Wk--~~~~~~~~~l~~~~p-~ll~~L~~~l~~~e~~vR~~a~e 1022 (1827)
|++|.. +++.- |. ++ ....|+ +|++.+++.+..+++ .++
T Consensus 332 eDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL-------------------- 391 (885)
T KOG2023|consen 332 EDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELL-------------------- 391 (885)
T ss_pred hhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHH--------------------
Confidence 666652 22221 11 01 113476 677777777777775 333
Q ss_pred HHhhhcccCCCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhH
Q psy14676 1023 CLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKIT 1102 (1827)
Q Consensus 1023 ~Lg~L~~~~~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~ 1102 (1827)
+.++|.|.+.|.+..|..|++++.+||+++.++.+++-|| ++.|+|.+++++.|.++-||
T Consensus 392 ----------~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~----------LpeLip~l~~~L~DKkplVR 451 (885)
T KOG2023|consen 392 ----------PILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPH----------LPELIPFLLSLLDDKKPLVR 451 (885)
T ss_pred ----------HHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccc----------hHHHHHHHHHHhccCcccee
Confidence 3457899999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHH
Q psy14676 1103 AEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILL 1182 (1827)
Q Consensus 1103 ~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll 1182 (1827)
+-.+++++.+.+++-. ..-..|+.+++..++.++. |.+..|+|+|++++..+.+.+|..+.||+..+|..|+
T Consensus 452 sITCWTLsRys~wv~~------~~~~~~f~pvL~~ll~~ll--D~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~ 523 (885)
T KOG2023|consen 452 SITCWTLSRYSKWVVQ------DSRDEYFKPVLEGLLRRLL--DSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLV 523 (885)
T ss_pred eeeeeeHhhhhhhHhc------CChHhhhHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 9999999999988642 2234688999999999998 8899999999999999999999999999988887774
Q ss_pred HhhhhhhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcCh-HhHHHHHH
Q psy14676 1183 DRLRNEITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAIST-EMLNKVTV 1261 (1827)
Q Consensus 1183 ~~L~~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~-~~~~~ll~ 1261 (1827)
. .+..+.+||- ..-++|+++|+.++|..++. .+++-++|
T Consensus 524 ~------------------------------------af~kYQ~KNL----lILYDAIgtlAdsvg~~Ln~~~YiqiLmP 563 (885)
T KOG2023|consen 524 F------------------------------------AFGKYQKKNL----LILYDAIGTLADSVGHALNKPAYIQILMP 563 (885)
T ss_pred H------------------------------------HHHHHhhcce----ehHHHHHHHHHHHHHHhcCcHHHHHHhcc
Confidence 2 2334445554 35688999999999988865 57888998
Q ss_pred Hhh---hhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHH
Q psy14676 1262 ELA---PLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASY 1338 (1827)
Q Consensus 1262 ~L~---~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~ 1338 (1827)
.|. .+++|+|.++.++ ++||+.++...... +.|-..|++-.||.
T Consensus 564 PLi~KW~~lsd~DKdLfPL-LEClSsia~AL~~g--------------------F~P~~~~Vy~Rc~~------------ 610 (885)
T KOG2023|consen 564 PLIEKWELLSDSDKDLFPL-LECLSSIASALGVG--------------------FLPYAQPVYQRCFR------------ 610 (885)
T ss_pred HHHHHHHhcCcccchHHHH-HHHHHHHHHHHhcc--------------------ccccCHHHHHHHHH------------
Confidence 886 5889999988887 88888777632211 22333344444442
Q ss_pred HHhhhhhhhhhhhHHHHHHhhhcCchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHH
Q psy14676 1339 TLGSIAVGNLQQYVPFVLKEIENQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAE 1418 (1827)
Q Consensus 1339 aLG~i~~~~l~~~LP~Il~~i~~~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAe 1418 (1827)
|++ +++..... ... .... . -.+ |+
T Consensus 611 ----------------il~-------------~t~q~~~~-~~~----~~~~------------~---~pd---kd---- 634 (885)
T KOG2023|consen 611 ----------------ILQ-------------KTLQLLAK-VQQ----DPTV------------E---APD---KD---- 634 (885)
T ss_pred ----------------HHH-------------HHHHHHHh-ccC----Cccc------------c---CCC---cc----
Confidence 111 11111100 000 0000 0 000 00
Q ss_pred HHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHH
Q psy14676 1419 CLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVK 1498 (1827)
Q Consensus 1419 cLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~ 1498 (1827)
++ .+++.-+..+...-+..+++.+ ..+.+..
T Consensus 635 ------------fi---------------I~sLDL~SGLaegLg~~ie~Lv----------------------a~snl~~ 665 (885)
T KOG2023|consen 635 ------------FI---------------IVSLDLLSGLAEGLGSHIEPLV----------------------AQSNLLD 665 (885)
T ss_pred ------------eE---------------EEeHHHHhHHHHHhhhchHHHh----------------------hhccHHH
Confidence 00 0001111111111111222222 1245778
Q ss_pred HHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhhhhccCCCCccc
Q psy14676 1499 MLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRNSSSNMKI 1578 (1827)
Q Consensus 1499 ~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~~~p~li~~ 1578 (1827)
.++.+++|+.|+||+++.+-||.+++.- ++.|
T Consensus 666 lll~C~~D~~peVRQS~FALLGDltk~c----------------------------------------------~~~v-- 697 (885)
T KOG2023|consen 666 LLLQCLQDEVPEVRQSAFALLGDLTKAC----------------------------------------------FEHV-- 697 (885)
T ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHH----------------------------------------------HHhc--
Confidence 9999999999999999999999998621 2334
Q ss_pred chhhhhhhhcccCCccccccc----ccccCCcchhccccceeeeccCcccccccCchhhhhHHHHHHHHHhhhhccCChH
Q psy14676 1579 DTLAFTHTLLTTHPPAVFHPH----IHILLPPVIIIKTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTCLDRVDMF 1654 (1827)
Q Consensus 1579 ~~~~~~~~~l~~llp~l~~~~----~~~~~~~t~~~~~lir~v~mgpfkh~vddgl~~Rk~a~e~~~~ll~~~~~~~~~~ 1654 (1827)
+|.+..++|.+.+|. +.+|++.+|.. .|+.| --|.++. ..+.
T Consensus 698 ------~p~~~~fl~~lg~Nl~~~~isv~nNA~WAi----Geia~-------k~g~~~~-----------------~~v~ 743 (885)
T KOG2023|consen 698 ------IPNLADFLPILGANLNPENISVCNNAIWAI----GEIAL-------KMGLKMK-----------------QYVS 743 (885)
T ss_pred ------cchHHHHHHHHhhcCChhhchHHHHHHHHH----HHHHH-------Hhchhhh-----------------hHHH
Confidence 566667777666555 55677778765 44322 1122322 2256
Q ss_pred HHHHHHHhhccchhhHHHH---HHHHHHHHHhhChHHHHHHHHHhhHHHHhhhccccccchhhHHHHHHHHHHHHHHHHH
Q psy14676 1655 EFLNHLESGLRDHYDIKML---TYLMLARLAQMTPAALLQRLERIVEPLRNTVTLKVKANSVKQEYEKQDELKRSAMRAV 1731 (1827)
Q Consensus 1655 ~~~~~~~~gl~d~~dik~l---~~~~l~~l~~~~p~~~~~~l~~l~~~~~~~l~~~~k~~~~kqe~e~~~e~~~s~~r~~ 1731 (1827)
.++..++..++..+.-+.+ +..+++||+.+||..++++++++..||+..|+ .+++| |.|.||+|++
T Consensus 744 ~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~-~i~Dn----------eEK~sAFrG~ 812 (885)
T KOG2023|consen 744 PVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLR-NIDDN----------EEKESAFRGL 812 (885)
T ss_pred HHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhc-ccccc----------hhHHHHHHHH
Confidence 6677777777776655555 89999999999999999999999999999998 69999 9999999999
Q ss_pred HHHhcccCCCCChhHHHHHHHHhC----CchHHHHHHHHhcccCC
Q psy14676 1732 AALLTIQDADKNPALNDFVATIKN----SPELQTIFDSMQKDSSL 1772 (1827)
Q Consensus 1732 ~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 1772 (1827)
|.+.++++.+....|..||+.|.. +.+++.+|.+|..++..
T Consensus 813 c~mi~vNp~~vv~~~~f~c~aiAsw~np~~~l~~~f~kiL~g~k~ 857 (885)
T KOG2023|consen 813 CNMINVNPSGVVSSFIFICDAIASWSNPEDDLRDEFYKILQGFKN 857 (885)
T ss_pred HHheeeCchhhhhhhHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999983 46799999999998865
|
|
| >PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-50 Score=422.68 Aligned_cols=164 Identities=55% Similarity=0.883 Sum_probs=150.4
Q ss_pred hhhcccCCcccccccccccCCcchhccccceeeeccCcccccccCchhhhhHHHHHHHHHhhhhccCChHHHHHHHHhhc
Q psy14676 1585 HTLLTTHPPAVFHPHIHILLPPVIIIKTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTCLDRVDMFEFLNHLESGL 1664 (1827)
Q Consensus 1585 ~~~l~~llp~l~~~~~~~~~~~t~~~~~lir~v~mgpfkh~vddgl~~Rk~a~e~~~~ll~~~~~~~~~~~~~~~~~~gl 1664 (1827)
+|+|+.++|.|| .||.+||||||+|+||||||+||||||+||+|||||||||++|.+++|+.+|+++++.||
T Consensus 4 ~~~L~~llP~ly--------~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL 75 (169)
T PF08623_consen 4 RPHLDQLLPNLY--------AETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGL 75 (169)
T ss_dssp TTTHHHHHHHHH--------HTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH--------HHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhc
Confidence 999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHhhChHHHHHHHHHhhHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHH-hcccCCCCC
Q psy14676 1665 RDHYDIKMLTYLMLARLAQMTPAALLQRLERIVEPLRNTVTLKVKANSVKQEYEKQDELKRSAMRAVAAL-LTIQDADKN 1743 (1827)
Q Consensus 1665 ~d~~dik~l~~~~l~~l~~~~p~~~~~~l~~l~~~~~~~l~~~~k~~~~kqe~e~~~e~~~s~~r~~~~l-~~~~~~~~~ 1743 (1827)
+|++|||+|||+||.||+.++|.++.++||++++||+++|++|+|++|||||+||++|++||++|++.+| .++++++.+
T Consensus 76 ~D~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~ 155 (169)
T PF08623_consen 76 KDEHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESS 155 (169)
T ss_dssp SS-HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSS
T ss_pred CCcHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred h-hHHHHHHHHhCC
Q psy14676 1744 P-ALNDFVATIKNS 1756 (1827)
Q Consensus 1744 ~-~~~~~~~~~~~~ 1756 (1827)
| +|.+|++.|++|
T Consensus 156 ~~~~~~f~~~i~~~ 169 (169)
T PF08623_consen 156 PNKWNEFVEWIKKN 169 (169)
T ss_dssp H-HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhcC
Confidence 9 999999999864
|
; PDB: 4A0C_A 1U6G_C. |
| >KOG2171|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=406.34 Aligned_cols=814 Identities=17% Similarity=0.233 Sum_probs=548.8
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhc--h
Q psy14676 35 CRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCN--L 112 (1827)
Q Consensus 35 ~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~--~ 112 (1827)
+++|+|.|.+...++ ++..|+.|+.+|..+.+.||..+.+|+..++..+.++|++++..||-.|++|++.++.+++ .
T Consensus 116 WPell~~L~q~~~S~-~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~ 194 (1075)
T KOG2171|consen 116 WPELLQFLFQSTKSP-NPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNK 194 (1075)
T ss_pred hHHHHHHHHHHhcCC-CcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccch
Confidence 788999999998764 8999999999999999999999999999999999999999876699999999999999995 2
Q ss_pred h---HHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhccc--CchHHHHHHHHHHH
Q psy14676 113 Q---LYTKLIDFLLEGLT---TNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSRE--EDDELREFCLQACE 184 (1827)
Q Consensus 113 ~---~~~~l~~~ll~~L~---~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~--~~delRe~al~ale 184 (1827)
. .|..+++.++..+. +.++.+....++.+|..++++.|+.++||+.+|+.+.+++..+ -++++|..|++.+-
T Consensus 195 ~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~iv 274 (1075)
T KOG2171|consen 195 SEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLV 274 (1075)
T ss_pred HHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 2 45667787777763 3455667899999999999999999999999999999999865 37899999999999
Q ss_pred HHHHhCCC---ccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHH
Q psy14676 185 AFVQRCPK---EITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVR 261 (1827)
Q Consensus 185 ~~~~~~p~---e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVR 261 (1827)
++++..|. ...+|.+.+++.++..|.. .++|++|. ++| | .|+|+++ ..-
T Consensus 275 s~~e~Ap~~~k~~~~~~~~lv~~~l~~mte-----~~~D~ew~------------~~d--~--~ded~~~-------~~~ 326 (1075)
T KOG2171|consen 275 SLSEYAPAMCKKLALLGHTLVPVLLAMMTE-----EEDDDEWS------------NED--D--LDEDDEE-------TPY 326 (1075)
T ss_pred HHHHhhHHHhhhchhhhccHHHHHHHhcCC-----cccchhhc------------ccc--c--ccccccc-------CcH
Confidence 99888764 3457899999999998854 12223331 000 0 0011111 234
Q ss_pred HHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHH
Q psy14676 262 RAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLS 341 (1827)
Q Consensus 262 raAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 341 (1827)
+.|.++|+.++.+.|+ ..+++.+++++...+.+.+|..|++++.|++.+. +||.+.+.
T Consensus 327 ~~A~~~lDrlA~~L~g--~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~--------------------EGc~~~m~ 384 (1075)
T KOG2171|consen 327 RAAEQALDRLALHLGG--KQVLPPLFEALEAMLQSTEWKERHAALLALSVIA--------------------EGCSDVMI 384 (1075)
T ss_pred HHHHHHHHHHHhcCCh--hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH--------------------cccHHHHH
Confidence 6799999999999885 2457778888889999999999999999999887 78889999
Q ss_pred hhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccc-cCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCC
Q psy14676 342 TQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCL-APSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDG 420 (1827)
Q Consensus 342 ~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l-~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~ 420 (1827)
..+|+|++.++++|+|++|+||++|+..++++...++..+ ..|+..+.|++...+.
T Consensus 385 ~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld----------------------- 441 (1075)
T KOG2171|consen 385 GNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLD----------------------- 441 (1075)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhc-----------------------
Confidence 9999999999999999999999999999999999998877 4566677778888862
Q ss_pred CCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh-hhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccC
Q psy14676 421 EDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR-DLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTF 499 (1827)
Q Consensus 421 ~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~-~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~ 499 (1827)
+..+-||+.+|+.++-++.+... +.+.||++.++...+..+
T Consensus 442 -------------~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L------------------------- 483 (1075)
T KOG2171|consen 442 -------------STQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLL------------------------- 483 (1075)
T ss_pred -------------ccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 22356899999999888886665 788888887765322221
Q ss_pred CCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhccc
Q psy14676 500 SPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIK 579 (1827)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~ 579 (1827)
T Consensus 484 -------------------------------------------------------------------------------- 483 (1075)
T KOG2171|consen 484 -------------------------------------------------------------------------------- 483 (1075)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHH
Q psy14676 580 LDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLL 659 (1827)
Q Consensus 580 ~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~ 659 (1827)
++.....||..++++||..+.+-+. .|.||.+-++|.|..+|+..+.
T Consensus 484 ----------------~~~~~~~v~e~vvtaIasvA~AA~~--------~F~pY~d~~Mp~L~~~L~n~~~--------- 530 (1075)
T KOG2171|consen 484 ----------------LQSSKPYVQEQAVTAIASVADAAQE--------KFIPYFDRLMPLLKNFLQNADD--------- 530 (1075)
T ss_pred ----------------hcCCchhHHHHHHHHHHHHHHHHhh--------hhHhHHHHHHHHHHHHHhCCCc---------
Confidence 1223345666666666655544332 2233333333333222222110
Q ss_pred HHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhhhhHHHhhhhcccccchhhh
Q psy14676 660 LDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAAL 739 (1827)
Q Consensus 660 l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~llp~ll~l~~s~~~~~~al 739 (1827)
T Consensus 531 -------------------------------------------------------------------------------- 530 (1075)
T KOG2171|consen 531 -------------------------------------------------------------------------------- 530 (1075)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchh
Q psy14676 740 TSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQ 819 (1827)
Q Consensus 740 ~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~ 819 (1827)
. .+
T Consensus 531 ---------------------------------------------------------~-----------d~--------- 533 (1075)
T KOG2171|consen 531 ---------------------------------------------------------K-----------DL--------- 533 (1075)
T ss_pred ---------------------------------------------------------h-----------hh---------
Confidence 0 00
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhh---cC---CCChhhHHHHHHHHHHHHHhccccchh
Q psy14676 820 VTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGL---TT---NKSTSTNRTYIQCFAAICRQAGHRFAE 893 (1827)
Q Consensus 820 ~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l---~~---~~~~~vr~~~l~~l~~L~~~~~~~~~~ 893 (1827)
.-+|++.+.|++.+...++.+.|.++...++..+ +. +.+...|...++.|+.+|+.+|+.|.|
T Consensus 534 -----------r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p 602 (1075)
T KOG2171|consen 534 -----------RELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAP 602 (1075)
T ss_pred -----------HHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHh
Confidence 0156667777777777777777766666666632 11 345688999999999999999999999
Q ss_pred hhhhhHHHHHHhhccc--------------------------ch----------HHHHHHHHHHHHHHhhCCCccccccc
Q psy14676 894 HIERVMPLILKYSREE--------------------------DD----------ELREFCLQACEAFVQRCPKEITPHIQ 937 (1827)
Q Consensus 894 yl~~ilP~ll~~l~d~--------------------------~~----------~vre~al~Ale~~v~~~~~~i~p~l~ 937 (1827)
|++.+||.+++..+-+ +. +-++.|+.++..+....+..+.||+.
T Consensus 603 ~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve 682 (1075)
T KOG2171|consen 603 FLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVE 682 (1075)
T ss_pred HHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 9999999999876520 00 11334444444444444444445443
Q ss_pred cccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHH-HHhhhhccccch
Q psy14676 938 SIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQ-LFLHCECQEEGT 1016 (1827)
Q Consensus 938 ~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~-L~~~l~~~e~~v 1016 (1827)
+ .++. +....-...++|
T Consensus 683 ~--------------------------------------------------------------v~~l~v~~l~f~fhdgV 700 (1075)
T KOG2171|consen 683 Q--------------------------------------------------------------VVELMVPLLKFYFHDGV 700 (1075)
T ss_pred H--------------------------------------------------------------HHHHHHHHHHhhhhhHH
Confidence 2 2220 000011223444
Q ss_pred hhHHHHHHhhhccc-------CCC-------CchHHHHHHhc-cCChhhHHHHHHHHHHHHHhcc-ccccccccchhhhh
Q psy14676 1017 RNVVAECLGKLTLI-------DPS-------NLLPRLQESLK-SNSALMRTTHQSNQTFNVIIQR-NDIHNHNEETSFIY 1080 (1827)
Q Consensus 1017 R~~a~e~Lg~L~~~-------~~~-------~llP~L~~~L~-s~~~~~R~~a~~~L~~l~~~~~-~~l~~~~~~~~~~~ 1080 (1827)
|..+.++++.+..- .|. .+.|.+.+.+. .+...+-.+.+..++.....++ ..+.+- +.++...
T Consensus 701 R~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~-~~~~~~~ 779 (1075)
T KOG2171|consen 701 RKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNED-GLEALLG 779 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcH-HHHHHHH
Confidence 44444444433211 111 12233333332 2233344444444442222222 222221 0011100
Q ss_pred hhhhhhhHHHHHhhcCC--------------------chhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHH
Q psy14676 1081 SFYYFLLSPVIASVGDN--------------------FYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLV 1140 (1827)
Q Consensus 1081 ~~l~~Lip~l~~~l~D~--------------------~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~ 1140 (1827)
-....+..++ ...+|. ...+-.++...+..+++.. +..|.|++..+++.+..
T Consensus 780 ~~~~~~l~~~-~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~-------k~~f~p~f~~~~p~iv~ 851 (1075)
T KOG2171|consen 780 GLLAQLLQHF-KRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKAL-------KGSFLPFFENFLPLIVK 851 (1075)
T ss_pred HHHHHHHHHH-HHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHc-------cccccHHHHHHHHHHHH
Confidence 0011111111 111111 1111223334444455443 46788999999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh--HHHHHHHHHHHhcCCCccccchhhhhhH
Q psy14676 1141 RLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT--RLTTVKALTKIAASPLRIDLRPILTDGI 1218 (1827)
Q Consensus 1141 ~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t--R~~av~al~~ia~~~~~~dl~p~~~~~l 1218 (1827)
.+..+ ...+ |+.|+.+++.++...|..-.++...++|.+++.+.++.+ |..|++.+|.++...+. +..|.+....
T Consensus 852 ~l~~~-~~~~-r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~-~y~~v~~~~l 928 (1075)
T KOG2171|consen 852 LLKSK-KTVA-RQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGE-DYAPVCSEAL 928 (1075)
T ss_pred HHhcC-CcHH-HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCc-chHHHHHHHH
Confidence 99843 3445 999999999999999998888999999999999988776 99999999999987653 3566666667
Q ss_pred hhhhhhhcc------hhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHh-hhhcCCCChhHHHHHHHHHHHHHHhCCC
Q psy14676 1219 PILGSFLRK------NQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVEL-APLVSESDLHIAQLTLTLLTSIAKIQPN 1291 (1827)
Q Consensus 1219 ~~L~~~Lrk------~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L-~~ll~d~D~~l~~~al~~L~~l~~~~~~ 1291 (1827)
+.|...+.. .++..+.++..|+..++...+..++ +..+++.+ ..+.-.+|..-.......|+.+.+.++.
T Consensus 929 ~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~---vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~e~n~p 1005 (1075)
T KOG2171|consen 929 PLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRIP---VDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLYESNHP 1005 (1075)
T ss_pred HHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCc---HHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHhCCC
Confidence 766665442 2355778899999999998887766 33444444 4455678888889999999999997654
Q ss_pred ccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHh
Q psy14676 1292 ALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEE 1331 (1827)
Q Consensus 1292 ~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~e 1331 (1827)
.+. |.-++ .+|.+..++...+.+..-+
T Consensus 1006 ~v~--------~~~n~-----~ip~i~~v~~~~~~~~~~~ 1032 (1075)
T KOG2171|consen 1006 IVL--------GPNNQ-----NIPKILSVCAESLADKKIE 1032 (1075)
T ss_pred eee--------CCCcc-----cchHHHHHHHhhhhccCCC
Confidence 321 11111 2356777777777655433
|
|
| >KOG2023|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=393.64 Aligned_cols=541 Identities=19% Similarity=0.277 Sum_probs=383.4
Q ss_pred HHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-----hhHHHHH
Q psy14676 8 LRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-----FHFVILT 82 (1827)
Q Consensus 8 ~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-----~~~~il~ 82 (1827)
+|.+.++-..||++.=... ..++++|.|.+.++++ +..+.++|+.+|..++++-+..++. ...-+++
T Consensus 106 Ir~tvGivITTI~s~~~~~-------~wpelLp~L~~~L~s~-d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mip 177 (885)
T KOG2023|consen 106 IRATVGIVITTIASTGGLQ-------HWPELLPQLCELLDSP-DYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIP 177 (885)
T ss_pred HHhhhhheeeeeecccccc-------cchhHHHHHHHHhcCC-cccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHH
Confidence 5666666666665544333 3799999999999864 7789999999999999999877654 2446888
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHH
Q psy14676 83 ALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGL---TTNKSTSTNRTYIQCFAAICRQAGHRFAEHIER 159 (1827)
Q Consensus 83 ~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L---~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~ 159 (1827)
.+++.++|++|.+|+.|+.|+..++..-++.++.+ ++.+++.| .++.++.||+..|.++.-+.+..++++.||++.
T Consensus 178 kfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~-iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~ 256 (885)
T KOG2023|consen 178 KFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVH-IDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDN 256 (885)
T ss_pred HHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHH-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHH
Confidence 89999999999999999999999999888776543 56666664 678889999999999999999999999999999
Q ss_pred HHHHHHhhcccCchHHHHHHHHHHHHHHHhC-----CCccccchHHHHHHHHHHhccCCCCC--cccccccCCCCCCCCC
Q psy14676 160 VMPLILKYSREEDDELREFCLQACEAFVQRC-----PKEITPHIQSITELCLTYITYDPNYN--YEDEEEGLGGEGGGEG 232 (1827)
Q Consensus 160 i~p~l~~~~~~~~delRe~al~ale~~~~~~-----p~e~~p~l~~ii~~ll~~l~~dpn~~--~~ddd~~~~~~~~~~~ 232 (1827)
|+.+|++..++.+++ .|++|+|+|...+ +..+.||++.++|+++..|.|...-. .+++||+..-.|-+++
T Consensus 257 IveyML~~tqd~dE~---VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeD 333 (885)
T KOG2023|consen 257 IVEYMLQRTQDVDEN---VALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREED 333 (885)
T ss_pred HHHHHHHHccCcchh---HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhh
Confidence 999999988876665 7899999999865 34578999999999999999953211 1111111000000000
Q ss_pred CC---------CcccCCCCCCCCCCCC-CCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHH
Q psy14676 233 MD---------TEEEDGEDEGEDDNEY-SDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVK 302 (1827)
Q Consensus 233 ~d---------~~~~d~dde~e~~~e~-sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR 302 (1827)
+- ..+++.+||||+|||+ +||.+..|+.|+|+|++|+-+++..++ ++++.++|.|.+.+.+.+|-||
T Consensus 334 IkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~---elL~~l~PlLk~~L~~~~W~vr 410 (885)
T KOG2023|consen 334 IKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGD---ELLPILLPLLKEHLSSEEWKVR 410 (885)
T ss_pred ccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHH---HHHHHHHHHHHHHcCcchhhhh
Confidence 00 0000101122222222 334456799999999999999998775 5788899999999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHH-HHHHHHHHHHHhCcccc
Q psy14676 303 SDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQ-DCLALLRELVQTLPGCL 381 (1827)
Q Consensus 303 ~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~-a~~~ll~~L~~vl~~~l 381 (1827)
.+++.|+|++. +||.+.+-+++|.++|.++++|.|+.+-||. +||++-+.-..++...-
T Consensus 411 EagvLAlGAIA--------------------EGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~ 470 (885)
T KOG2023|consen 411 EAGVLALGAIA--------------------EGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSR 470 (885)
T ss_pred hhhHHHHHHHH--------------------HHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCCh
Confidence 99999999998 6799999999999999999999999999998 99988766666665555
Q ss_pred cCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhh
Q psy14676 382 APSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGD 461 (1827)
Q Consensus 382 ~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~ 461 (1827)
.+|+.+++.++.+.+- |.+=+|+.||+.++.++-+..|..+-|
T Consensus 471 ~~~f~pvL~~ll~~ll-------------------------------------D~NK~VQEAAcsAfAtleE~A~~eLVp 513 (885)
T KOG2023|consen 471 DEYFKPVLEGLLRRLL-------------------------------------DSNKKVQEAACSAFATLEEEAGEELVP 513 (885)
T ss_pred HhhhHHHHHHHHHHHh-------------------------------------cccHHHHHHHHHHHHHHHHhccchhHH
Confidence 5788888888777763 235569999999999999999999999
Q ss_pred hHHhhhhhHHHhhcch-hh--hhHHHHHHHHHHHHhhcccCCC------CCCCCCcccccCCCccch--hhchhhHHHHH
Q psy14676 462 MYRLVSPPLIARFKER-EE--NVKSDIFHAYMALLKGTRTFSP------LTPSDPNQMDQEDSPVCL--LSTQVPSLVKA 530 (1827)
Q Consensus 462 ~~~~l~~~L~~~~~d~-~~--~Vr~~a~~~l~~L~~~~g~~~~------~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~ 530 (1827)
|+..++..|+.+|+.. +. -|--+|+.++.+-+-.. +..| +.+...++....++...+ +-...-++..+
T Consensus 514 ~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~-Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~A 592 (885)
T KOG2023|consen 514 YLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHA-LNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASA 592 (885)
T ss_pred HHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHh-cCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 9999999999888544 22 34455666665543100 0000 111111222222221110 00011112222
Q ss_pred HHHHhhhhhhhhHHhH-------HHHHHHh-----hcCCCccccccchHHHHHHHhhhccccch--hhHHHHHHHHHHHh
Q psy14676 531 LQCQLREKSIRTRQDC-------LALLREL-----MTSSDKDFRFMATNDLMSELQKDSIKLDD--DSERKVVKMLLRLL 596 (1827)
Q Consensus 531 l~~~l~~~~~~~~~~~-------l~~l~~~-----~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~--~~~~~i~~~l~~~l 596 (1827)
+...+-+-...+.+.| +..+... +..||+||-.+++ ||.+.+.++...+.. ...+.++.+++.|+
T Consensus 593 L~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sL-DL~SGLaegLg~~ie~Lva~snl~~lll~C~ 671 (885)
T KOG2023|consen 593 LGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSL-DLLSGLAEGLGSHIEPLVAQSNLLDLLLQCL 671 (885)
T ss_pred HhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeH-HHHhHHHHHhhhchHHHhhhccHHHHHHHHh
Confidence 2222212222222222 2233222 2345666666665 666666666654333 46677999999999
Q ss_pred hcchhhHHHHHHHhhhhHHHHhhhhh
Q psy14676 597 EDKNGEVQNLAVKCLGPLFKALTKIA 622 (1827)
Q Consensus 597 ~D~~~eV~~~A~~~lg~l~~~~~~~~ 622 (1827)
.|+.+|||+.|.+.||+++|++.+.+
T Consensus 672 ~D~~peVRQS~FALLGDltk~c~~~v 697 (885)
T KOG2023|consen 672 QDEVPEVRQSAFALLGDLTKACFEHV 697 (885)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998744
|
|
| >KOG2171|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-31 Score=331.94 Aligned_cols=947 Identities=16% Similarity=0.190 Sum_probs=591.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCC-CCHHHHHHHHHHHHHHHH----hhchhHHH
Q psy14676 42 LSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSS-PRQAVRKRTIVALSHLVM----SCNLQLYT 116 (1827)
Q Consensus 42 Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~-~~~~VRk~Ai~aL~~l~~----~~~~~~~~ 116 (1827)
|+..+.+ +|..+|..|=..|..+... +.+++.|...+++ +++.||.-|..-+..++. .++.+.-+
T Consensus 9 Ll~~l~s-pDn~vr~~Ae~~l~~~~~~---------~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~ 78 (1075)
T KOG2171|consen 9 LLQQLLS-PDNEVRRQAEEALETLAKT---------EPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQ 78 (1075)
T ss_pred HHHHhcC-CCchHHHHHHHHHHHhhcc---------cchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHH
Confidence 3344433 3667788888887765332 1267777777774 789999888776666554 45555666
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCcccc
Q psy14676 117 KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITP 196 (1827)
Q Consensus 117 ~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p 196 (1827)
++-..++..+.+...+.+|+..++.++.+++...+. .++++++++++..+..++..||.|+.-|-++....+...+|
T Consensus 79 siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~ 155 (1075)
T KOG2171|consen 79 SIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQP 155 (1075)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccch
Confidence 777788888877778899999999999999988766 69999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcC
Q psy14676 197 HIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR 276 (1827)
Q Consensus 197 ~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~ 276 (1827)
|++.+.+++.+.|.. .|-.||-+|++++++++....
T Consensus 156 ~~~~l~~lf~q~~~d--------------------------------------------~s~~vr~~a~rA~~a~~~~~~ 191 (1075)
T KOG2171|consen 156 HLDDLLRLFSQTMTD--------------------------------------------PSSPVRVAAVRALGAFAEYLE 191 (1075)
T ss_pred hHHHHHHHHHHhccC--------------------------------------------CcchHHHHHHHHHHHHHHHhc
Confidence 999999999998731 011499999999999998774
Q ss_pred --CchhhhHHhhhHH----HHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHH
Q psy14676 277 --DLIGDMYRLVSPP----LIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKA 350 (1827)
Q Consensus 277 --~~l~~~~~~v~p~----L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~ 350 (1827)
....+.|..++|. +....++.+...-..++.+|..++. ...+.+.+++..|+..
T Consensus 192 ~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e--------------------~~pk~l~~~l~~ii~~ 251 (1075)
T KOG2171|consen 192 NNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLE--------------------SEPKLLRPHLSQIIQF 251 (1075)
T ss_pred cchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHh--------------------hchHHHHHHHHHHHHH
Confidence 2233345555554 4455577888888999999998883 2457889999999999
Q ss_pred HHHHhccC--CHhHHHHHHHHHHHHHHhCccc---ccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCC
Q psy14676 351 LQCQLREK--SIRTRQDCLALLRELVQTLPGC---LAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGE 425 (1827)
Q Consensus 351 l~~~L~d~--~~~vR~a~~~ll~~L~~vl~~~---l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~ 425 (1827)
.++..+++ +..+|+.+++++..+.+..|.- ..++.++|+|.+..++.+. +.|+|.-++++.
T Consensus 252 ~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~--------------~~D~ew~~~d~~ 317 (1075)
T KOG2171|consen 252 SLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEE--------------EDDDEWSNEDDL 317 (1075)
T ss_pred HHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCc--------------ccchhhcccccc
Confidence 99988665 4679999999999999998873 3578899999999997321 111111122222
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHHHHHHHhh-hhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCC
Q psy14676 426 DDNEYSDDDDMSWKVRRAAAKCLEAIIATRR-DLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTP 504 (1827)
Q Consensus 426 ~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~-~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~ 504 (1827)
||+++++ -...|.+++-.++.++| +.+.| .+++.+...++...++-|.+|+-.++.+.++.+
T Consensus 318 ded~~~~-------~~~~A~~~lDrlA~~L~g~~v~p---~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~------- 380 (1075)
T KOG2171|consen 318 DEDDEET-------PYRAAEQALDRLALHLGGKQVLP---PLFEALEAMLQSTEWKERHAALLALSVIAEGCS------- 380 (1075)
T ss_pred ccccccC-------cHHHHHHHHHHHHhcCChhhehH---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccH-------
Confidence 2222221 23567888888888888 44443 344555666777888888888877666665433
Q ss_pred CCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchhh
Q psy14676 505 SDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDS 584 (1827)
Q Consensus 505 ~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~ 584 (1827)
+ .+.+ .
T Consensus 381 --------------------------------~-------~m~~-----------------------------------~ 386 (1075)
T KOG2171|consen 381 --------------------------------D-------VMIG-----------------------------------N 386 (1075)
T ss_pred --------------------------------H-------HHHH-----------------------------------H
Confidence 0 0111 3
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHHHHHHH
Q psy14676 585 ERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLL 664 (1827)
Q Consensus 585 ~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~ 664 (1827)
.++++++++..++|++++||+-|..++|++. .||.|.+
T Consensus 387 l~~Il~~Vl~~l~DphprVr~AA~naigQ~s------------tdl~p~i------------------------------ 424 (1075)
T KOG2171|consen 387 LPKILPIVLNGLNDPHPRVRYAALNAIGQMS------------TDLQPEI------------------------------ 424 (1075)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHhhh------------hhhcHHH------------------------------
Confidence 4678899999999999999999999888775 2222111
Q ss_pred hhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchh-hhhhhhHHHhhhhc---ccccchhhhh
Q psy14676 665 VNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEP-AAASILPQVLQIAK---SPLLQGAALT 740 (1827)
Q Consensus 665 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~-~~~~llp~ll~l~~---s~~~~~~al~ 740 (1827)
+. +...++|.++...+ +++++-+|-.
T Consensus 425 --------------------------------------------------qk~~~e~l~~aL~~~ld~~~~~rV~ahAa~ 454 (1075)
T KOG2171|consen 425 --------------------------------------------------QKKHHERLPPALIALLDSTQNVRVQAHAAA 454 (1075)
T ss_pred --------------------------------------------------HHHHHHhccHHHHHHhcccCchHHHHHHHH
Confidence 11 12334455555443 2333444455
Q ss_pred hHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchhH
Q psy14676 741 SMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQV 820 (1827)
Q Consensus 741 ~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~ 820 (1827)
++.+|+
T Consensus 455 al~nf~-------------------------------------------------------------------------- 460 (1075)
T KOG2171|consen 455 ALVNFS-------------------------------------------------------------------------- 460 (1075)
T ss_pred HHHHHH--------------------------------------------------------------------------
Confidence 555543
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHh----hhcCCCChhhHHHHHHHHHHHHHhccccchhhhh
Q psy14676 821 TIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLE----GLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIE 896 (1827)
Q Consensus 821 ~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~----~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~ 896 (1827)
..+..+.+..+.+.+.. .+.++.++.+|+.++++++.+|..+++.|.||.+
T Consensus 461 -------------------------E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d 515 (1075)
T KOG2171|consen 461 -------------------------EECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFD 515 (1075)
T ss_pred -------------------------HhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHH
Confidence 33333333333333333 3455678899999999999999999999999999
Q ss_pred hhHHHHHHhhcccc-hHHHHHHHHHHHHHHh---hCC-CccccccccccccCCcchhhhhHHHHHhh-cCCChHhHhhhh
Q psy14676 897 RVMPLILKYSREED-DELREFCLQACEAFVQ---RCP-KEITPHIQSIGRHTDLTSVADLKQVILNA-FTPTSEEVKSAA 970 (1827)
Q Consensus 897 ~ilP~ll~~l~d~~-~~vre~al~Ale~~v~---~~~-~~i~p~l~~i~~~~~~s~~~~L~~~l~~~-~~~~~e~~r~~~ 970 (1827)
++||.+.+.++..+ ++.|+...+++|.... -.+ ..+.|+..+++. ++... .++-++ .+...
T Consensus 516 ~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliq------------ll~~~~~~~~~~-dd~~~ 582 (1075)
T KOG2171|consen 516 RLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQ------------LLLELQGSDQDD-DDPLR 582 (1075)
T ss_pred HHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHH------------HHHhhcccchhh-ccccH
Confidence 99999999999754 7778777777666432 122 345555544432 11100 000000 00000
Q ss_pred hcccchhhHhhhhcccccchhhhhhh----hHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHH---HHHh
Q psy14676 971 SYTLGSIAEIISWQSTSTSGVAQLQQ----FVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRL---QESL 1043 (1827)
Q Consensus 971 ~~~lg~~~~~i~Wk~~~~~~~~~l~~----~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L---~~~L 1043 (1827)
+|.... -+...+.+-+ ++|.+|.-+++..+-..+..- .--+..............+.= .=.+
T Consensus 583 sy~~~~----------warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~-~d~~d~e~~~~~~~~e~~~~~~~e~~~I 651 (1075)
T KOG2171|consen 583 SYMIAF----------WARMCRILGDDFAPFLPVVMPPLLKTARLDPDVAL-SDEEDEEEEQDLDGWEVVELGDKENIGI 651 (1075)
T ss_pred HHHHHH----------HHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccC-cCchhhhhccccccchhhccCCceeeee
Confidence 000000 0112233332 224444444443211100000 000000000000000000000 0001
Q ss_pred ccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhh-cCCchhhHHHHHHHHHHHHHHhccCCCC
Q psy14676 1044 KSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASV-GDNFYKITAEALLVLQQFVKVIRPLTSP 1122 (1827)
Q Consensus 1044 ~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l-~D~~~~V~~eAl~~l~~lv~~l~~~~~~ 1122 (1827)
+.+-...|..+|.+|+.++...+..|.|| +.+.++.++..+ -.....||..|+..+..+++..+..-..
T Consensus 652 ~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pY----------ve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~ 721 (1075)
T KOG2171|consen 652 RTSVLDEKETACEALGEYAKELKEAFAPY----------VEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQG 721 (1075)
T ss_pred eehhHHHHHHHHHHHHHHHHhhhhhhhhH----------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22345689999999999999999999999 666666333333 3445679999999998888875531001
Q ss_pred CCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhh-hhh-hhhhhhHHHHHHhhhhhhhHHHHHHHHHH
Q psy14676 1123 SSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGD-YLK-SELPVCLPILLDRLRNEITRLTTVKALTK 1200 (1827)
Q Consensus 1123 ~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~-~l~-~~l~~lL~~Ll~~L~~e~tR~~av~al~~ 1200 (1827)
+.....+....+.+.++..+. ...+.+|-..-+++++..++..|+ .|. ++...++..+..++.+-..|..-.+.-+.
T Consensus 722 ~p~~l~~l~~~~~~~l~~~l~-~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~ 800 (1075)
T KOG2171|consen 722 GPEYLKQLWEAIRPALIKALE-EEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDD 800 (1075)
T ss_pred ChHHHHHHHHHHHHHHHHHhh-cCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 112222333444455555554 355788999999999999999996 444 46777777777776655444332222110
Q ss_pred HhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHH
Q psy14676 1201 IAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLT 1280 (1827)
Q Consensus 1201 ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~ 1280 (1827)
- +.+.. ...+... .++..+-....+.+..+++..+....+ ....+.|.+..++..+...-|+.++.
T Consensus 801 e---------ed~d~-~eee~~~---e~d~~ll~~i~~i~~~l~k~~k~~f~p-~f~~~~p~iv~~l~~~~~~~r~~av~ 866 (1075)
T KOG2171|consen 801 E---------EDDDI-EEEEDLD---EQDAYLLDAISDILAALAKALKGSFLP-FFENFLPLIVKLLKSKKTVARQWAVC 866 (1075)
T ss_pred h---------hhhhh-HHHHHHh---hhhHHHHHHHHHHHHHHHHHccccccH-HHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 0 01111 0111111 344445556667777777777766554 46788888899998887777999888
Q ss_pred HHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhh
Q psy14676 1281 LLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIE 1360 (1827)
Q Consensus 1281 ~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~ 1360 (1827)
++..+++.+... . +.....+.|.++.++.|.++|||++|++.+|-.+--.=..|-|.+...+.
T Consensus 867 ~~~d~ie~~~~a----------------~-~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~ 929 (1075)
T KOG2171|consen 867 IFDDLIEGCGEA----------------S-AKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALP 929 (1075)
T ss_pred HHHHHHHhcccc----------------c-chHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 888887754321 1 23446799999999999999999999999998653222224444433221
Q ss_pred cCchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCC-----cchHHH
Q psy14676 1361 NQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPS-----NLLPRL 1435 (1827)
Q Consensus 1361 ~~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~-----~~lP~L 1435 (1827)
.|..++.. .+.+ .......+.++..|++|+...+|. .++|.+
T Consensus 930 -----------~L~~~iq~--------------------~~ar--~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl~~~ 976 (1075)
T KOG2171|consen 930 -----------LLVQVLQP--------------------PLAR--TEENRRATENAIGAIAKILLFNPNRIPVDQVLPAW 976 (1075)
T ss_pred -----------HHHHHHcC--------------------hhhh--hHHHhHHHHHHHHHHHHHHHhCCccCcHHHHHHHH
Confidence 11112110 0000 001122466788999999987764 466666
Q ss_pred HHhhh-cCCHHHHHHHHHHHHHHhhh
Q psy14676 1436 QESLK-SNSALMRTTVLTAVKFTISD 1460 (1827)
Q Consensus 1436 ~~~l~-~~~~~~R~t~l~Alk~~~~~ 1460 (1827)
...|. ..|...-....+-|..++..
T Consensus 977 l~~LPl~~D~eEa~~iy~~l~~L~e~ 1002 (1075)
T KOG2171|consen 977 LSWLPLKEDKEEAVPIYTFLSDLYES 1002 (1075)
T ss_pred HHhCCCccchhhhhhHHHHHHHHHHh
Confidence 66664 33444444455555666543
|
|
| >KOG1241|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.7e-28 Score=290.91 Aligned_cols=691 Identities=15% Similarity=0.214 Sum_probs=464.2
Q ss_pred HHHHHHHHHHHHHhhCCCCChhhhh------------hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCC-
Q psy14676 8 LRDISSIGLKTVISELPLGSNALAA------------NVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLP- 74 (1827)
Q Consensus 8 ~Rdi~~~~Lktvi~~lp~~~~~~~~------------~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~- 74 (1827)
-+.|.+..|+|+.+--|...+..++ +..+.+++.|...+.++....+|+.+|.+||.+|++..|...
T Consensus 88 reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~ 167 (859)
T KOG1241|consen 88 REQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLE 167 (859)
T ss_pred HHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHH
Confidence 4556777888888777776653333 334778888888875543446999999999999999987643
Q ss_pred chhHHHHHHHhhhcCC--CCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhc----cCCCCHHHHHHHHHHHHHHHHH
Q psy14676 75 SFHFVILTALLPQLSS--PRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGL----TTNKSTSTNRTYIQCFAAICRQ 148 (1827)
Q Consensus 75 ~~~~~il~~ll~~L~~--~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L----~~~~~~~~r~~ai~~l~~la~~ 148 (1827)
.....++.++...+.. ++..||-.|..||-+-.+.....+-.+.-.+++... .+.++..++..+++||..|...
T Consensus 168 ~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~L 247 (859)
T KOG1241|consen 168 QQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSL 247 (859)
T ss_pred HHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHH
Confidence 3566899999999875 567999999999999888776543333333444332 3456788999999999999999
Q ss_pred hchhhHHhHHH-HHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccc----------cc------------hHHHHHHH
Q psy14676 149 AGHRFAEHIER-VMPLILKYSREEDDELREFCLQACEAFVQRCPKEIT----------PH------------IQSITELC 205 (1827)
Q Consensus 149 ~~~~~~p~l~~-i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~----------p~------------l~~ii~~l 205 (1827)
..+++.+|+.+ +++..+..+..++|+ .|+|++|+|...|.+|+. .+ ++.++|.+
T Consensus 248 yY~~m~~yM~~alfaitl~amks~~de---ValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~L 324 (859)
T KOG1241|consen 248 YYEFMEPYMEQALFAITLAAMKSDNDE---VALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVL 324 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHH
Confidence 99999999987 899989988877776 579999999998865443 22 34789999
Q ss_pred HHHhcc-CCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHH
Q psy14676 206 LTYITY-DPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYR 284 (1827)
Q Consensus 206 l~~l~~-dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~ 284 (1827)
++.+.. |||+ ||| .|++-+||..||.-++...++ .+.+
T Consensus 325 l~~L~kqde~~------------------------------------d~D--dWnp~kAAg~CL~l~A~~~~D---~Iv~ 363 (859)
T KOG1241|consen 325 LELLTKQDEDD------------------------------------DDD--DWNPAKAAGVCLMLFAQCVGD---DIVP 363 (859)
T ss_pred HHHHHhCCCCc------------------------------------ccc--cCcHHHHHHHHHHHHHHHhcc---cchh
Confidence 988865 2110 111 299999999999999999887 4566
Q ss_pred hhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHH
Q psy14676 285 LVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQ 364 (1827)
Q Consensus 285 ~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~ 364 (1827)
.++|++.+.++.++|.-|.+++.|||.++.. -+...+.+.++..+|.+++.+.|++.-||.
T Consensus 364 ~Vl~Fiee~i~~pdwr~reaavmAFGSIl~g-------------------p~~~~Lt~iV~qalp~ii~lm~D~sl~Vkd 424 (859)
T KOG1241|consen 364 HVLPFIEENIQNPDWRNREAAVMAFGSILEG-------------------PEPDKLTPIVIQALPSIINLMSDPSLWVKD 424 (859)
T ss_pred hhHHHHHHhcCCcchhhhhHHHHHHHhhhcC-------------------CchhhhhHHHhhhhHHHHHHhcCchhhhcc
Confidence 8999999999999999999999999999842 123567889999999999999999999999
Q ss_pred HHHHHHHHHHHhCcccc--cCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHH
Q psy14676 365 DCLALLRELVQTLPGCL--APSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRR 442 (1827)
Q Consensus 365 a~~~ll~~L~~vl~~~l--~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~ 442 (1827)
++...|+.++..+|.+. ..|++.+++.+...|+|.+..+.+ .+|+.-.
T Consensus 425 TaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N------------------------------~CWAf~~ 474 (859)
T KOG1241|consen 425 TAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASN------------------------------VCWAFIS 474 (859)
T ss_pred hHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHH------------------------------HHHHHHH
Confidence 77777899999999755 568899999999999877666422 4675532
Q ss_pred HHHHHHHHHHHHhh--hhhhhhHHhhhhhHHHhhcc---hhhhhHHHHHHHHHHHHhhccc-CCCCCCCCCcccccCCCc
Q psy14676 443 AAAKCLEAIIATRR--DLIGDMYRLVSPPLIARFKE---REENVKSDIFHAYMALLKGTRT-FSPLTPSDPNQMDQEDSP 516 (1827)
Q Consensus 443 ~a~~~l~~l~~~~~--~~f~~~~~~l~~~L~~~~~d---~~~~Vr~~a~~~l~~L~~~~g~-~~~~~~~~~~~~~~~~~~ 516 (1827)
.|-.+--..... | +...|||+.++..|+....- ...+.|.+|++.|.++++...- .+|
T Consensus 475 Laea~~eA~~s~-~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~--------------- 538 (859)
T KOG1241|consen 475 LAEAAYEAAVSN-GQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYP--------------- 538 (859)
T ss_pred HHHHHHHhccCC-CCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHH---------------
Confidence 221111111111 2 34558999999999987633 4679999999999999987541 111
Q ss_pred cchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHH----HHHHhhhccccchhhHHHHHHHH
Q psy14676 517 VCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDL----MSELQKDSIKLDDDSERKVVKML 592 (1827)
Q Consensus 517 ~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl----~~~~~~~~~~~d~~~~~~i~~~l 592 (1827)
.+....+.++.++.+.+.......-. .-.++.+.++ ++.+.++.-+--......++..+
T Consensus 539 --~v~~~~l~il~kl~q~i~~~~l~~~d---------------r~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lf 601 (859)
T KOG1241|consen 539 --MVQKLTLVILEKLDQTISSQILSLAD---------------RAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLF 601 (859)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhccHhh---------------HHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHH
Confidence 13344566666666555411110000 0001111110 11111221121124667889999
Q ss_pred HHHhhc-chhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhh-hhhhhhhhHHHHHHHHhhCCCc
Q psy14676 593 LRLLED-KNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKN-QRALKLSTLLLLDTLLVNYPSA 670 (1827)
Q Consensus 593 ~~~l~D-~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~-~~~lk~~~l~~l~~l~~~~~~~ 670 (1827)
+++++- .+.-|+..|+-+++.++..++. .|.+|+|.++|-|..+|+.. .+.
T Consensus 602 lri~~s~~s~~v~e~a~laV~tl~~~Lg~--------~F~kym~~f~pyL~~gL~n~~e~q------------------- 654 (859)
T KOG1241|consen 602 LRIFESKRSAVVHEEAFLAVSTLAESLGK--------GFAKYMPAFKPYLLMGLSNFQEYQ------------------- 654 (859)
T ss_pred HHHHcCCccccchHHHHHHHHHHHHHHhH--------hHHHHHHHHHHHHHHHhhcchHHH-------------------
Confidence 999987 6678999999999999999985 78899999999999888543 332
Q ss_pred ccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhhhhHHHhhhhcccccchhhhhhHHHHHHHHH
Q psy14676 671 ISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFKSLV 750 (1827)
Q Consensus 671 ~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~llp~ll~l~~s~~~~~~al~~l~~~~~~lv 750 (1827)
+...|..+++-++.. + .+ +|
T Consensus 655 -----------------------Vc~~aVglVgdl~ra---------L---------------------~~--~i----- 674 (859)
T KOG1241|consen 655 -----------------------VCAAAVGLVGDLARA---------L---------------------ED--DI----- 674 (859)
T ss_pred -----------------------HHHHHHHHHHHHHHH---------H---------------------Hh--hh-----
Confidence 333333333333210 0 00 00
Q ss_pred hhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcc----CCCchhHHHHHHh
Q psy14676 751 LAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTN----KDDAHQVTIVALS 826 (1827)
Q Consensus 751 ~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~----~~~~~~~~~~~~~ 826 (1827)
.++..+++..|+..+. ++.+||..=-.|..|||.+.-+++.+-.++.+.++..++.. +++++ ++
T Consensus 675 -----~py~d~~mt~Lvq~Ls-s~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~------~~ 742 (859)
T KOG1241|consen 675 -----LPYCDELMTVLVQCLS-SPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPAD------DS 742 (859)
T ss_pred -----hhHHHHHHHHHHHHcc-CccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCc------cc
Confidence 1223334444443332 23344444446777888888888877666666666655431 11100 11
Q ss_pred hhhh-hhhhHHHHHHHHHHHhhhc----HHHHHHHHHHHHhhh---cCC--CChhhHHHHHHHHHHHHHhccccchhhhh
Q psy14676 827 HLVM-SCNLQLTIVALSHLVMSCN----LQLYTKLIDFLLEGL---TTN--KSTSTNRTYIQCFAAICRQAGHRFAEHIE 896 (1827)
Q Consensus 827 ~~~~-~~~r~~Ai~aL~~l~~~~~----~~~~~~l~~~l~~~l---~~~--~~~~vr~~~l~~l~~L~~~~~~~~~~yl~ 896 (1827)
.+-| --+|..++++.+-++-.+. ..+...+.+.++.-+ ..+ .+-.+.++++.++|.|+..+|.+..+.+.
T Consensus 743 ~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~ 822 (859)
T KOG1241|consen 743 MVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFL 822 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhc
Confidence 1111 1277777777766665554 234445566655533 333 34578899999999999999988776544
Q ss_pred h---hHHHHHHhhcccchHHHHHHHHHHHH
Q psy14676 897 R---VMPLILKYSREEDDELREFCLQACEA 923 (1827)
Q Consensus 897 ~---ilP~ll~~l~d~~~~vre~al~Ale~ 923 (1827)
+ |..++-++.+..+...|+.|--|.+.
T Consensus 823 ~~~~i~~~L~~~~k~~~~~tK~~A~wa~e~ 852 (859)
T KOG1241|consen 823 DEDWIKDFLNEGRKSSTQKTKDLARWATEE 852 (859)
T ss_pred chHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 3 55555555544556667776555544
|
|
| >KOG1241|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-24 Score=257.20 Aligned_cols=636 Identities=16% Similarity=0.207 Sum_probs=431.5
Q ss_pred cccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhhhhHHHhhhhcccccchhhhhhHHHHHHHH
Q psy14676 670 AISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFKSL 749 (1827)
Q Consensus 670 ~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~llp~ll~l~~s~~~~~~al~~l~~~~~~l 749 (1827)
+++++..++|+..+...++.+-+..+..|..++..|+.
T Consensus 82 ~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~------------------------------------------ 119 (859)
T KOG1241|consen 82 QLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIAC------------------------------------------ 119 (859)
T ss_pred cCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHH------------------------------------------
Confidence 56777777777777777776666667777666666653
Q ss_pred HhhhCCCCCHHHHHHHhhccccc-cchhhhhhHHHHHHHHHHHHHHhhhhhh-----hHHHHHHHHhhccCCCchhHHHH
Q psy14676 750 VLAELPGLSFSELLNMLIAPVMT-GTALHKQAFHSLAKCVAALAITVQREAL-----PVVEKFLKELKTNKDDAHQVTIV 823 (1827)
Q Consensus 750 v~~~~~~~~~~~ll~~L~~~~~~-~~~~~~~al~~~~~~~g~~~~~~~~~~~-----~~v~~~l~~l~~~~~~~~~~~~~ 823 (1827)
.|+|..-|++++..|.+.++. ++...|+ +....+|++|..+.++.+ ..++.+++.+.....++
T Consensus 120 --~ElP~n~wp~li~~lv~nv~~~~~~~~k~---~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~------ 188 (859)
T KOG1241|consen 120 --IELPQNQWPELIVTLVSNVGEEQASMVKE---SSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSA------ 188 (859)
T ss_pred --hhCchhhCHHHHHHHHHhcccccchHHHH---HHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCch------
Confidence 233444444444444444432 2223344 567778999988777643 33466666766533222
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhh-cC---CCChhhHHHHHHHHHHHHHhccccchhhhhh-h
Q psy14676 824 ALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGL-TT---NKSTSTNRTYIQCFAAICRQAGHRFAEHIER-V 898 (1827)
Q Consensus 824 ~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l-~~---~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~-i 898 (1827)
.+|-.|..||.+...|...+|-++..+..++.. +. .++..++.++++|+..+..-+++.+.+|+.+ +
T Consensus 189 --------~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~al 260 (859)
T KOG1241|consen 189 --------AVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQAL 260 (859)
T ss_pred --------hHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999999988863 33 6778999999999999999999999999999 9
Q ss_pred HHHHHHhhcccchHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhh
Q psy14676 899 MPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIA 978 (1827)
Q Consensus 899 lP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~ 978 (1827)
.+..+.++..++++| |+||+|+|...|..+++.++.- .. .++. + +..
T Consensus 261 faitl~amks~~deV---alQaiEFWsticeEEiD~~~e~-~e----------------~~d~----------~-~~p-- 307 (859)
T KOG1241|consen 261 FAITLAAMKSDNDEV---ALQAIEFWSTICEEEIDLAIEY-GE----------------AVDQ----------G-LPP-- 307 (859)
T ss_pred HHHHHHHHcCCcHHH---HHHHHHHHHHHHHHHHHHHHHH-HH----------------Hhhc----------C-CCc--
Confidence 999999999888886 7999999999999998876541 00 0000 0 000
Q ss_pred HhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhh---HHHHHHhhhcccCCC----CchHHHHHHhccCChhhH
Q psy14676 979 EIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRN---VVAECLGKLTLIDPS----NLLPRLQESLKSNSALMR 1051 (1827)
Q Consensus 979 ~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~---~a~e~Lg~L~~~~~~----~llP~L~~~L~s~~~~~R 1051 (1827)
.+-+....++..+.|.+++.|-++-++.+++.|+ .|..||.-++....+ .++|.+.+.+++++|.-|
T Consensus 308 ------~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~r 381 (859)
T KOG1241|consen 308 ------SSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNR 381 (859)
T ss_pred ------hhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhh
Confidence 0001234567888999999999887666666664 578999888877554 466677778899999999
Q ss_pred HHHHHHHHH-HHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCc--------------------------------
Q psy14676 1052 TTHQSNQTF-NVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNF-------------------------------- 1098 (1827)
Q Consensus 1052 ~~a~~~L~~-l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~-------------------------------- 1098 (1827)
+.++-++|. +.-..+..++|+ ++..+|.++..+.|+.
T Consensus 382 eaavmAFGSIl~gp~~~~Lt~i----------V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l 451 (859)
T KOG1241|consen 382 EAAVMAFGSILEGPEPDKLTPI----------VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKL 451 (859)
T ss_pred hHHHHHHHhhhcCCchhhhhHH----------HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHH
Confidence 999999994 444445566665 6677777776666655
Q ss_pred ----------hhhHHHHHHHHHHHHHHhccC-CCC-CCCCcchhHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHH
Q psy14676 1099 ----------YKITAEALLVLQQFVKVIRPL-TSP-SSYDFAPFTSDIYQCTLVRLKAAD-IDQEVKERAISCMGQIICN 1165 (1827)
Q Consensus 1099 ----------~~V~~eAl~~l~~lv~~l~~~-~~~-~~~~~~~~l~~l~~~ll~~L~~~D-~d~eVre~Ai~alg~l~~~ 1165 (1827)
|+|++.+++++..|++....- .+. ......||++.|+..++......| .+...|-+|.++|++++.+
T Consensus 452 ~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~ 531 (859)
T KOG1241|consen 452 SALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKN 531 (859)
T ss_pred HHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc
Confidence 444445555555555443210 011 112334788888888888766555 4677999999999999999
Q ss_pred hhhhhhhhhhhhHHHHHHhhhhhhh--------HHH-----H--HHHHHHHhcCCCccccchhhhhhHhhhhhhhcc-hh
Q psy14676 1166 LGDYLKSELPVCLPILLDRLRNEIT--------RLT-----T--VKALTKIAASPLRIDLRPILTDGIPILGSFLRK-NQ 1229 (1827)
Q Consensus 1166 ~g~~l~~~l~~lL~~Ll~~L~~e~t--------R~~-----a--v~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk-~~ 1229 (1827)
..+...+-...+...++++|.+... |.. + .-.|+.|.....+ |..++...++..|.+.+.+ .+
T Consensus 532 st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~-~~~~~~d~iM~lflri~~s~~s 610 (859)
T KOG1241|consen 532 STDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS-DIREVSDQIMGLFLRIFESKRS 610 (859)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHHHcCCcc
Confidence 9988888788888888887754321 211 1 1123333332222 5667777777777766655 33
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhc-CCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccc
Q psy14676 1230 RALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLV-SESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRH 1308 (1827)
Q Consensus 1230 r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll-~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~ 1308 (1827)
..+...++-|+++++.+.+..+. .+++.+.|.|...+ +-.|.+|...+.+..+.++...... +-+
T Consensus 611 ~~v~e~a~laV~tl~~~Lg~~F~-kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~------------i~p- 676 (859)
T KOG1241|consen 611 AVVHEEAFLAVSTLAESLGKGFA-KYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDD------------ILP- 676 (859)
T ss_pred ccchHHHHHHHHHHHHHHhHhHH-HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhh------------hhh-
Confidence 45778899999999998666542 36777888888877 6689999999999999988843321 111
Q ss_pred cCCCchhhHHHHHHHhcCCC--CHhHHHHHHHHHhhhhh---hhhhhhHHHHHHhhhc------Cc----------hhhH
Q psy14676 1309 TDLTSVADLKQVILNAFTPT--SEEVKSAASYTLGSIAV---GNLQQYVPFVLKEIEN------QP----------KRQY 1367 (1827)
Q Consensus 1309 ~~~~~~~~l~~~~l~~~~~~--s~eVr~aAa~aLG~i~~---~~l~~~LP~Il~~i~~------~~----------~~q~ 1367 (1827)
+-..++..+++++.++ ..+||=+.....|+|+. .++.+||-.++..++. .+ +.|.
T Consensus 677 ----y~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe 752 (859)
T KOG1241|consen 677 ----YCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELRE 752 (859)
T ss_pred ----HHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHH
Confidence 2257888999999886 56788888888898653 4788888877765532 11 1222
Q ss_pred HHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCC--chhHHHHHHHHHHHhhccCCCcchHHH
Q psy14676 1368 LLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQ--EEGTRNVVAECLGKLTLIDPSNLLPRL 1435 (1827)
Q Consensus 1368 ~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~--~e~vR~~aAecLGkL~~~~p~~~lP~L 1435 (1827)
-++.+---+++.+... --...+.||++.|+..+-+....+ +|.+-..++.-||-|+..+|..+++.+
T Consensus 753 ~~leay~gi~qglk~~-~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~ 821 (859)
T KOG1241|consen 753 GILEAYTGIIQGLKTH-ADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLF 821 (859)
T ss_pred HHHHHHHHHHHHhhcc-cchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhh
Confidence 3344443444322110 002346799999988776654322 255566677889999999886555443
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-19 Score=210.84 Aligned_cols=391 Identities=15% Similarity=0.208 Sum_probs=275.5
Q ss_pred HHHHHHHHHHHHHhhCCCCChhhhh------------hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccC-CCC
Q psy14676 8 LRDISSIGLKTVISELPLGSNALAA------------NVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGA-LLP 74 (1827)
Q Consensus 8 ~Rdi~~~~Lktvi~~lp~~~~~~~~------------~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~-~l~ 74 (1827)
-..+.+.+|+++.+--|+.++..++ +..+.++-.+......+....++.+++.++|.+|+.-.| .+.
T Consensus 92 k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li 171 (858)
T COG5215 92 KEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLI 171 (858)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHH
Confidence 3456778888888888887753333 122334444444444444677899999999999999888 343
Q ss_pred chhHHHHHHHhhh-cCC-CCHHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHhc---cCCCCHHHHHHHHHHHHHHHHH
Q psy14676 75 SFHFVILTALLPQ-LSS-PRQAVRKRTIVALSHLVMSCNLQLYTKLI-DFLLEGL---TTNKSTSTNRTYIQCFAAICRQ 148 (1827)
Q Consensus 75 ~~~~~il~~ll~~-L~~-~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~-~~ll~~L---~~~~~~~~r~~ai~~l~~la~~ 148 (1827)
.....++..+... ++. +..+||-.|..||-.-........-.+.- ..+++.. .+.++.+++..++.|+..+.-.
T Consensus 172 ~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~L 251 (858)
T COG5215 172 QMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMML 251 (858)
T ss_pred HHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHH
Confidence 3344555555444 554 56799999999988754444333222221 2223322 4456788999999999999999
Q ss_pred hchhhHHhHHHHH-HHHHhhcccCchHHHHHHHHHHHHHHHhCCCccc-----cc---------------hHHHHHHHHH
Q psy14676 149 AGHRFAEHIERVM-PLILKYSREEDDELREFCLQACEAFVQRCPKEIT-----PH---------------IQSITELCLT 207 (1827)
Q Consensus 149 ~~~~~~p~l~~i~-p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~-----p~---------------l~~ii~~ll~ 207 (1827)
..+.+.+|+++.+ .+..+.+....|+ .++|+.|+|...|.+++. .| ...++|.++.
T Consensus 252 yY~fm~~ymE~aL~alt~~~mks~nd~---va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~ 328 (858)
T COG5215 252 YYKFMQSYMENALAALTGRFMKSQNDE---VAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLS 328 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchH---HHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHH
Confidence 9999999998644 4445666777776 579999999998866432 22 2347888887
Q ss_pred Hhcc-CCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhh
Q psy14676 208 YITY-DPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLV 286 (1827)
Q Consensus 208 ~l~~-dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v 286 (1827)
.+.. +||| . +..|.+-.+|+.||.-++...++. +++.+
T Consensus 329 LL~~q~ed~-----------------------------------~---~DdWn~smaA~sCLqlfaq~~gd~---i~~pV 367 (858)
T COG5215 329 LLEKQGEDY-----------------------------------Y---GDDWNPSMAASSCLQLFAQLKGDK---IMRPV 367 (858)
T ss_pred HHHhcCCCc-----------------------------------c---ccccchhhhHHHHHHHHHHHhhhH---hHHHH
Confidence 7754 3332 0 113999999999999999988864 45567
Q ss_pred hHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHH-H
Q psy14676 287 SPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQ-D 365 (1827)
Q Consensus 287 ~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~-a 365 (1827)
+.++.+.+..+.|.-|.++.+|||+++. +.|...+...+|+.+|.+...+.|+..-|.. +
T Consensus 368 l~FvEqni~~~~w~nreaavmAfGSvm~-------------------gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~tt 428 (858)
T COG5215 368 LGFVEQNIRSESWANREAAVMAFGSVMH-------------------GPCEDCLTKIVPQALPGIENEMSDSCLWVKSTT 428 (858)
T ss_pred HHHHHHhccCchhhhHHHHHHHhhhhhc-------------------CccHHHHHhhHHhhhHHHHHhcccceeehhhHH
Confidence 8888899999999999999999999983 2245678899999999999999999888888 6
Q ss_pred HHHHHHHHHHhCccccc--CchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHH
Q psy14676 366 CLALLRELVQTLPGCLA--PSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRA 443 (1827)
Q Consensus 366 ~~~ll~~L~~vl~~~l~--~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~ 443 (1827)
+|+ ++.++...+..+. .|++..+.....-++|.+.++.+ .+|+.-
T Consensus 429 Awc-~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~n------------------------------csw~~~-- 475 (858)
T COG5215 429 AWC-FGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSIN------------------------------CSWRKE-- 475 (858)
T ss_pred HHH-HHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhh------------------------------hHHHHH--
Confidence 666 8999999988775 47776666666666665544322 357653
Q ss_pred HHHHHHHHHHHh---hhhhhhhHHhhhhhHHHhh--cchhhhhHHHHHHHHHHHHhhc
Q psy14676 444 AAKCLEAIIATR---RDLIGDMYRLVSPPLIARF--KEREENVKSDIFHAYMALLKGT 496 (1827)
Q Consensus 444 a~~~l~~l~~~~---~~~f~~~~~~l~~~L~~~~--~d~~~~Vr~~a~~~l~~L~~~~ 496 (1827)
.+...+++.. ..++.+|+..++..|+... .+.+.+.|.++|.+++.|+...
T Consensus 476 --nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~ 531 (858)
T COG5215 476 --NLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILIC 531 (858)
T ss_pred --hHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhc
Confidence 3333334333 3556689999988888764 4557789999999999888643
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-16 Score=215.77 Aligned_cols=1250 Identities=15% Similarity=0.128 Sum_probs=660.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc--hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhc-hhH
Q psy14676 38 ITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS--FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCN-LQL 114 (1827)
Q Consensus 38 L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~--~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~-~~~ 114 (1827)
.+|.|+..+.++ +..+|..|..+|..+..+ +.... .....++.++..|++.++..|+.|+.+|..++..-. +..
T Consensus 59 aIP~LV~lL~sg-~~~vk~nAaaaL~nLS~~--e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~ 135 (2102)
T PLN03200 59 AMPLLVSLLRSG-TLGAKVNAAAVLGVLCKE--EDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHV 135 (2102)
T ss_pred cHHHHHHHHcCC-CHHHHHHHHHHHHHHhcC--HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhh
Confidence 578899988754 788999999998888755 11100 013456677888888899999999999999997642 211
Q ss_pred ----H--HHHHHHHHHhccCCC--CHHHHHHHHHHHHHHHHHhchhhHHhH-HHHHHHHHhhcccCchHHHHHHHHHHHH
Q psy14676 115 ----Y--TKLIDFLLEGLTTNK--STSTNRTYIQCFAAICRQAGHRFAEHI-ERVMPLILKYSREEDDELREFCLQACEA 185 (1827)
Q Consensus 115 ----~--~~l~~~ll~~L~~~~--~~~~r~~ai~~l~~la~~~~~~~~p~l-~~i~p~l~~~~~~~~delRe~al~ale~ 185 (1827)
+ ...++.|+..|.... +..+++.++.+|..++.....+-..-+ ...+|.+++.++.+++++++.|..++..
T Consensus 136 ~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~ 215 (2102)
T PLN03200 136 GSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLAR 215 (2102)
T ss_pred hhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1 234677777775532 233567777888888876554322212 3588999999988889999888777766
Q ss_pred HHHhCCCccccch-HHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHH
Q psy14676 186 FVQRCPKEITPHI-QSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAA 264 (1827)
Q Consensus 186 ~~~~~p~e~~p~l-~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraA 264 (1827)
++..+++-....+ ...+|.+.+.+..++ .-++|..|
T Consensus 216 Lass~ee~~~aVIeaGaVP~LV~LL~sg~-------------------------------------------~~~VRE~A 252 (2102)
T PLN03200 216 LMMAFESSISKVLDAGAVKQLLKLLGQGN-------------------------------------------EVSVRAEA 252 (2102)
T ss_pred HHcCChHHHHHHHHCCCHHHHHHHHccCC-------------------------------------------ChHHHHHH
Confidence 6655543111111 235677777663210 01589999
Q ss_pred HHHHHHHHHHcCCchhhhH-HhhhHHHHhhcCCCCH---------hHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCC
Q psy14676 265 AKCLEAIIATRRDLIGDMY-RLVSPPLIARFKEREE---------NVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQED 334 (1827)
Q Consensus 265 ak~L~~l~~~~~~~l~~~~-~~v~p~L~~~l~e~ee---------~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~ 334 (1827)
+.+|..++...++.-..+. ...+|.|+..+..+.+ ..+..++.+++.++..
T Consensus 253 A~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg------------------- 313 (2102)
T PLN03200 253 AGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG------------------- 313 (2102)
T ss_pred HHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC-------------------
Confidence 9999999975333211111 2457778877765443 3488899999988821
Q ss_pred ChHhhHHhhhHHHHHHHHHHhccCC-HhHHHHHHHHHHHHHHhCcccc--cCch--hhHHHHHHHHhhhhhcccCCCCCC
Q psy14676 335 SPLCLLSTQVPSLVKALQCQLREKS-IRTRQDCLALLRELVQTLPGCL--APSL--PALIPDVTSVAEWDEEEGLGGEGG 409 (1827)
Q Consensus 335 ~~~~~l~~~lp~Iv~~l~~~L~d~~-~~vR~a~~~ll~~L~~vl~~~l--~~~l--~~Llp~i~~~L~~~~~~~~~~~~~ 409 (1827)
.+.+++.+.+.+.... ..+.-.++..+..+...+.+.- ..-+ ..+++.+.+++++.
T Consensus 314 ---------~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k---------- 374 (2102)
T PLN03200 314 ---------MSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPR---------- 374 (2102)
T ss_pred ---------chhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCC----------
Confidence 1445666666554432 2222244444455544443321 1111 23456777777431
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh--hhhhhhHHhhhhhHHHhhcchhhhhHHHHHH
Q psy14676 410 GEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR--DLIGDMYRLVSPPLIARFKEREENVKSDIFH 487 (1827)
Q Consensus 410 ~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~--~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~ 487 (1827)
+ .-.++..+.++|..++...- ..|.. ....+.|+..+......++..+..
T Consensus 375 ------------------------~--p~~vqe~V~eALasl~gN~~l~~~L~~--~daik~LV~LL~~~~~evQ~~Av~ 426 (2102)
T PLN03200 375 ------------------------D--TKLVQERIIEALASLYGNAYLSRKLNH--AEAKKVLVGLITMATADVQEELIR 426 (2102)
T ss_pred ------------------------C--CchhHHHHHHHHHHhcCChHHHHHHHh--ccchhhhhhhhccCCHHHHHHHHH
Confidence 0 00123445555544332111 12221 234566777777677778888887
Q ss_pred HHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchH
Q psy14676 488 AYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATN 567 (1827)
Q Consensus 488 ~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~ 567 (1827)
.+..|...-.- ..+.+ .....+|.+.+++...+++++..+..
T Consensus 427 aL~~L~~~~~e----------------------------~~~aI----------i~~ggIp~LV~LL~s~s~~iQ~~A~~ 468 (2102)
T PLN03200 427 ALSSLCCGKGG----------------------------LWEAL----------GGREGVQLLISLLGLSSEQQQEYAVA 468 (2102)
T ss_pred HHHHHhCCCHH----------------------------HHHHH----------HHcCcHHHHHHHHcCCCHHHHHHHHH
Confidence 77776643110 00000 11234677777777766666666555
Q ss_pred HHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccc--cchhhhhhhhh
Q psy14676 568 DLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPIL--TDGIPILGSFL 645 (1827)
Q Consensus 568 dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l--~~~i~~l~~~l 645 (1827)
.+-...+.+.-........-.++.|.++|...+.++|..|..+|+++...-.. ....+ .+++|.|..+|
T Consensus 469 ~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~q---------ir~iV~~aGAIppLV~LL 539 (2102)
T PLN03200 469 LLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSED---------IRACVESAGAVPALLWLL 539 (2102)
T ss_pred HHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHH---------HHHHHHHCCCHHHHHHHH
Confidence 44444321100000112234588899999999999999999999998742111 11222 36788899999
Q ss_pred hhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccch-hh--hhhhh
Q psy14676 646 RKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVE-PA--AASIL 722 (1827)
Q Consensus 646 ~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~-~~--~~~ll 722 (1827)
++++...|..++.++..+...... ..++.+ ..++...+..+...++..++.+.......... .. -+.-+
T Consensus 540 ~sgd~~~q~~Aa~AL~nLi~~~d~----~~I~~L----v~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL 611 (2102)
T PLN03200 540 KNGGPKGQEIAAKTLTKLVRTADA----ATISQL----TALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDAL 611 (2102)
T ss_pred hCCCHHHHHHHHHHHHHHHhccch----hHHHHH----HHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccH
Confidence 999888999999999988654332 223333 33345555666666777776665433222211 11 24578
Q ss_pred HHHhhhhccccc--chhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhh
Q psy14676 723 PQVLQIAKSPLL--QGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREAL 800 (1827)
Q Consensus 723 p~ll~l~~s~~~--~~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~ 800 (1827)
|.+.++++++.. +..|.+.+.++|. ...+..+.+ + ..
T Consensus 612 ~~Lv~LL~sgs~~ikk~Aa~iLsnL~a-------~~~d~~~av---v----------------------------~a--- 650 (2102)
T PLN03200 612 RTLIQLLSSSKEETQEKAASVLADIFS-------SRQDLCESL---A----------------------------TD--- 650 (2102)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhc-------CChHHHHHH---H----------------------------Hc---
Confidence 888888765543 4566777666651 111111110 0 00
Q ss_pred hHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHH-----HHHHHHhhhcCCCChhhHHH
Q psy14676 801 PVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTK-----LIDFLLEGLTTNKSTSTNRT 875 (1827)
Q Consensus 801 ~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~-----l~~~l~~~l~~~~~~~vr~~ 875 (1827)
..|+.++..++++.. .+|+.|..||+++.....++.-.. .++.++.-+ ++.+..+++.
T Consensus 651 gaIpPLV~LLss~~~----------------~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL-~~~d~~v~e~ 713 (2102)
T PLN03200 651 EIINPCIKLLTNNTE----------------AVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLA-KSSSIEVAEQ 713 (2102)
T ss_pred CCHHHHHHHHhcCCh----------------HHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHH-hCCChHHHHH
Confidence 112345555554221 267788888888887555543322 233444434 3567789999
Q ss_pred HHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCC--ccccccccccccCCcchhhhhHH
Q psy14676 876 YIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPK--EITPHIQSIGRHTDLTSVADLKQ 953 (1827)
Q Consensus 876 ~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~--~i~p~l~~i~~~~~~s~~~~L~~ 953 (1827)
++.++..+++.....-.-.-...+|.+...+++.+++.|+.|..|+..+....+. .+.-++...+- +..|-+
T Consensus 714 Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~------v~~l~~ 787 (2102)
T PLN03200 714 AVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGT------VLALVD 787 (2102)
T ss_pred HHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCc------HHHHHH
Confidence 9999999998753332222356799999999999999999999999888766542 12222211110 111111
Q ss_pred HHHhhcCCChHhH-hhhhhcccchhhHhhhhc----ccccchh---hhhhhhHHHHHHHHHhhhhccccchhhHHHHHHh
Q psy14676 954 VILNAFTPTSEEV-KSAASYTLGSIAEIISWQ----STSTSGV---AQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLG 1025 (1827)
Q Consensus 954 ~l~~~~~~~~e~~-r~~~~~~lg~~~~~i~Wk----~~~~~~~---~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg 1025 (1827)
+ ++..+.+.-.+ ... +.+.|= ..+...+ ..+.+ .|.-+.-|..++....+.+++.|++.|.
T Consensus 788 ~-L~~~~~~~~~~~~al---------~~l~~l~~~~~~~~~~~~~~~~~~e-~p~~l~~l~~~l~~~~p~~~~kai~il~ 856 (2102)
T PLN03200 788 L-LNSTDLDSSATSEAL---------EALALLARTKGGANFSHPPWAVLAE-VPSSLEPLVRCLAEGHPLVQDKAIEILS 856 (2102)
T ss_pred H-HhcCCcchhhHHHHH---------HHHHHHHhhcccCCCCCCchhhHHh-ccCchHHHHHHHHcCChHHHHHHHHHHH
Confidence 1 11111110000 000 011110 0001111 11111 1333444555567778899999999999
Q ss_pred hhcccCCC-----------CchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhh
Q psy14676 1026 KLTLIDPS-----------NLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASV 1094 (1827)
Q Consensus 1026 ~L~~~~~~-----------~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l 1094 (1827)
+|+.-.|. .+-..-.+.+.+++..+|.+...+|-..+.+..+...+-+++...+.+.+..++..+.+--
T Consensus 857 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 936 (2102)
T PLN03200 857 RLCRDQPVVLGDLIANASKCISSLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQALVDMLKQNS 936 (2102)
T ss_pred HHhccChhHHHHHHhcccchHHHHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHhccC
Confidence 99876432 1222233445777888888777666643333332211112222233333334433332200
Q ss_pred -----------------------cCCc----hh-h--HHHHHHHHHHHH--------------------HHhc---cCCC
Q psy14676 1095 -----------------------GDNF----YK-I--TAEALLVLQQFV--------------------KVIR---PLTS 1121 (1827)
Q Consensus 1095 -----------------------~D~~----~~-V--~~eAl~~l~~lv--------------------~~l~---~~~~ 1121 (1827)
.|.+ |. + -.-|++.+..+. +.+. +...
T Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~q 1016 (2102)
T PLN03200 937 KKESLSIEIQTPRGFLESNLFADGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEAGGIEVLTEKLASYTSNRQ 1016 (2102)
T ss_pred cccccceeecCCccchhhhhhccCCcccCCCCCccCcchHHHHHHHHHHcCCccchhhhhhcccHHHHHHHHHhhccCcc
Confidence 0000 00 0 012333333322 2110 0000
Q ss_pred -CCCCCcchhHHH--------------------HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh--------------
Q psy14676 1122 -PSSYDFAPFTSD--------------------IYQCTLVRLKAADIDQEVKERAISCMGQIICNL-------------- 1166 (1827)
Q Consensus 1122 -~~~~~~~~~l~~--------------------l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~-------------- 1166 (1827)
...+.-..|+.. .++.+-.-++ .++.-=|-.|..+++.++.+-
T Consensus 1017 ~~~~d~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~q~~a~~~~~g~r~~~~~~~~~~~~ 1094 (2102)
T PLN03200 1017 AEFEDSESIWISALLLAILFQDRDVVRAPATMRAIPSLANLLK--SEETIDRYFAAQALASLVCNGSRGTLLAVANSGAV 1094 (2102)
T ss_pred ccccccHHHHHHHHHHHHHcCChhhhcCHhHHHHhHHHHhhhh--hHHHHHHHHHHHHHHHHHHcCCcchhhhhhccccc
Confidence 000001112222 1111111111 111111333334444333321
Q ss_pred -------hh---------------hhh--h------------------hhhhhHHHHHHhhhhhh----hHHHHHHHHHH
Q psy14676 1167 -------GD---------------YLK--S------------------ELPVCLPILLDRLRNEI----TRLTTVKALTK 1200 (1827)
Q Consensus 1167 -------g~---------------~l~--~------------------~l~~lL~~Ll~~L~~e~----tR~~av~al~~ 1200 (1827)
|. .+. | .-.+.+|.|++.|++-. .|..|++.+..
T Consensus 1095 ~~~~~~~~~~~~~~~~l~~l~~e~~l~~~~~~~~le~lf~~~~ir~~~~a~~~Ip~Lv~lL~~~~~r~~~~~~AL~kLr~ 1174 (2102)
T PLN03200 1095 GGLISLLGCAESDISNLVALSEEFSLVRNPDQVALERLFRVEDIRVGATARKAIPLLVDLLKPIPDRPGAPPLALGLLTQ 1174 (2102)
T ss_pred chhhhhhhhhhhhHHHHHHHHHHhhccccHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHhccccccccchHHHHHHHHH
Confidence 00 000 0 01345899999998654 26788877777
Q ss_pred HhcCCC----------ccc-c-------------------------c------hhhhhhHhhhhhhhcchhHHHHHHHHH
Q psy14676 1201 IAASPL----------RID-L-------------------------R------PILTDGIPILGSFLRKNQRALKLSTLL 1238 (1827)
Q Consensus 1201 ia~~~~----------~~d-l-------------------------~------p~~~~~l~~L~~~Lrk~~r~lR~~al~ 1238 (1827)
++.... ..+ + . ......+..|...|+..++..|..+..
T Consensus 1175 LA~EserNR~~maeaGAle~L~kvLSl~~s~s~e~a~~ElL~IL~~~~e~~~~l~a~~~v~~Lv~vL~~Gs~~aR~~Aa~ 1254 (2102)
T PLN03200 1175 LAEGSDVNKLAMAEAGALDALTKYLSLGPQDSTEEAASELLRILFSSPELRRHESAFGAVNQLVAVLRLGSRSARYSAAR 1254 (2102)
T ss_pred HHhcCHHHHHHHHHcCCHHHHHHHHHhcCccchhHHHHHHHHHHhCCHHHHHHhhhhhHHHHHHHHHhcCCHHHHHHHHH
Confidence 774210 000 0 0 001134556777788778888888888
Q ss_pred HHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCC--ccc----------------------
Q psy14676 1239 LLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPN--ALV---------------------- 1294 (1827)
Q Consensus 1239 aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~--~~~---------------------- 1294 (1827)
+|..+...-..+ ......+.++.|..+++.........++..|-.+++..+. ...
T Consensus 1255 aL~~L~~~~~~~-~~~~a~~ai~pLv~ll~~~~~~~~~~a~~ALvkL~kd~is~~a~~~~~~~a~L~~l~~iL~~~~~~~ 1333 (2102)
T PLN03200 1255 ALQELFSAEHIR-DSELARQAVQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLE 1333 (2102)
T ss_pred HHHHHHhhhhhh-hhhhhhccchHHHHHhcccchhhhHHHHHHHHHHHcCCCChHhHhhcccchhHHHHHHhcccccchh
Confidence 888876642100 0001123444445555555555555555555555553321 100
Q ss_pred -hhhHHhhhhhc-c--cccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhh--------hhhhhhHHHHHHhhhcC
Q psy14676 1295 -EPAAASILPQI-G--RHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAV--------GNLQQYVPFVLKEIENQ 1362 (1827)
Q Consensus 1295 -~~~i~~~lgei-G--~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~--------~~l~~~LP~Il~~i~~~ 1362 (1827)
...++.+|.-+ + +.-....-...++.++..+.++...+.+.|..+|..++. .+-.-..|.+......+
T Consensus 1334 l~~~l~~Lc~~l~~~~~~R~~~v~agaV~~LIeLL~de~~~~~E~Al~vLd~Lc~~eegre~~~~h~a~vplV~~ilrvS 1413 (2102)
T PLN03200 1334 LKEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCALDRLLDDEQLAELVAAHGAVVPLVGLVVGTN 1413 (2102)
T ss_pred HHHHHHHHhHHhcCChHHHhhHHHhCCHHHHHHHHhccCchHHHHHHHHHHHHhcCHhhHHHHHHcCChhhHHHHHHcCC
Confidence 01122223210 1 100000012356667777777777778888888877432 11123456666333333
Q ss_pred chhhHHHHHHHHHHHhhccccccchhhhh-chHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccC--------CCcchH
Q psy14676 1363 PKRQYLLLHSLKEIISWQSTSTSGVAQLQ-QFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLID--------PSNLLP 1433 (1827)
Q Consensus 1363 ~~~q~~~l~aL~Eii~~~~~s~~g~~~L~-~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~--------p~~~lP 1433 (1827)
..-+.....+|--+-. +...+-.+.++ .-+..+.-.|.. | .+..++.|++-|.-|.... .+...|
T Consensus 1414 ~~a~E~AV~aL~kl~~--~~~~v~~Emv~~G~~~kllllLQ~-c---~~~lkekAaeLLrlL~~~~~~~~~~~~~~~~~~ 1487 (2102)
T PLN03200 1414 YVLHEAAISALIKLGK--DRPPCKLDMVKAGIIERVLDILPE-A---PDSLCSAIAELLRILTNNSSIAKGQSAAKVVEP 1487 (2102)
T ss_pred HHHHHHHHHHHHHHhC--CChHHHHHHHHhCHHHHHHHHHHc-C---CHHHHHHHHHHHHHhccchhhccccchhhhhHH
Confidence 3344455555533321 11000001122 133444444443 3 3558888888876665421 134567
Q ss_pred HHHHhhhcC-CHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHH
Q psy14676 1434 RLQESLKSN-SALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQ 1512 (1827)
Q Consensus 1434 ~L~~~l~~~-~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr 1512 (1827)
.+..+++.. .......+++|+-.++.+ ++.. ..+. | -....+..++.+|.++++.|+
T Consensus 1488 ~~~~l~~~~~~~~~~~~al~~l~~i~e~-~~~~-~~~~-~-------------------~~~~~i~~Li~lL~s~~~~vq 1545 (2102)
T PLN03200 1488 LFLLLTRPDLGTWGQHSALQALVNILEK-PQCL-ASLT-L-------------------TPSQAIEPLIPLLESPSQAVQ 1545 (2102)
T ss_pred HHHHHhccCcceecHHHHHHHHHHHHhC-cchh-hhhh-c-------------------CccchHHHHHHHHcCCcHHHH
Confidence 777777644 222233466666655532 2211 1110 0 114577899999999999999
Q ss_pred HHHHHHhhhhhhhhhhh---hHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhhh
Q psy14676 1513 NLAVKCLGPLVNKVKEF---QVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLG 1568 (1827)
Q Consensus 1513 ~~a~~~Lg~L~~~l~~~---~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~ 1568 (1827)
..|++.++-|...-... .....|.||.+.+..++. .+|..|..+|-..
T Consensus 1546 e~aa~ll~~l~~~~~~~~~~~~~~aI~pLv~~l~~~~~--------~~~~~A~~aL~~~ 1596 (2102)
T PLN03200 1546 QLAAELLSHLLAEEHFQQDITTQNAVVPLVRLAGIGIL--------SLQQRAVKALESI 1596 (2102)
T ss_pred HHHHHHHHHHhcchHHhhhhhcccchHHHHHHhcCCCh--------hHHHHHHHHHHHh
Confidence 99999999888544332 245677788887775544 8888888888433
|
|
| >KOG0211|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.5e-20 Score=233.75 Aligned_cols=539 Identities=15% Similarity=0.153 Sum_probs=352.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHh
Q psy14676 7 QLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTALL 85 (1827)
Q Consensus 7 ~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll 85 (1827)
+.|.....=++++-..+.... .+.+++|++.+.+.+ +. +.+.++++=++.|.+..+. ++..++...+
T Consensus 97 ~~r~~~~~~l~~~a~~~~~~~------tr~~lipf~~e~~~~--~d----ev~~~~a~~~~~~~~~v~~~~~~~~ll~~l 164 (759)
T KOG0211|consen 97 QLRLNSGRKLSNLALALGVER------TRLELIPFLTEAEDD--ED----EVLLDLAEQLGTFLPDVGGPEYAHMLLPPL 164 (759)
T ss_pred hhhhhhhccccchhhhcccch------hhhhhhhHHHHhccc--hh----HHHHHHHHHhcccchhccchhHHHHhhHHH
Confidence 444444444444444443333 278999999998843 22 3334444444444444433 3333333334
Q ss_pred hh-cCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhch-hhHHhHHHHHHH
Q psy14676 86 PQ-LSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGH-RFAEHIERVMPL 163 (1827)
Q Consensus 86 ~~-L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~-~~~p~l~~i~p~ 163 (1827)
+. ..+....||++++..+..++...++......+..++..+...++...|-.++..++..+-..++ .+. .++-|.
T Consensus 165 e~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk---~elr~~ 241 (759)
T KOG0211|consen 165 ELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVK---RELRPI 241 (759)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHH---HHHHHH
Confidence 44 4466789999999999999999888766666677777776555555566666666666655552 222 345566
Q ss_pred HHhhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCccc-ccccCCCCCCCCCCCCcccCCCC
Q psy14676 164 ILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYED-EEEGLGGEGGGEGMDTEEEDGED 242 (1827)
Q Consensus 164 l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~d-dd~~~~~~~~~~~~d~~~~d~dd 242 (1827)
..+.++++.+++|..+-.-++.++...+++... ..++|...+....|.+-.-.- -+.-. ...+-++.++ | -.
T Consensus 242 ~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~--s~v~~~~~~L~~DdqdsVr~~a~~~~~---~l~~l~~~~~-d-~~ 314 (759)
T KOG0211|consen 242 VQSLCQDDTPMVRRAVASNLGNIAKVLESEIVK--SEVLPTLIQLLRDDQDSVREAAVESLV---SLLDLLDDDD-D-VV 314 (759)
T ss_pred HHhhccccchhhHHHHHhhhHHHHHHHHHHHHH--hhccHHHhhhhhcchhhHHHHHHHHHH---HHHHhcCCch-h-hh
Confidence 677777777777776666677776655543211 112222222222211100000 00000 0000000000 0 00
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccC--
Q psy14676 243 EGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFS-- 320 (1827)
Q Consensus 243 e~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~-- 320 (1827)
....+.-..+.+|.+|++|+..++..-.+....++ ...-....|.....+++.+|++|.++..-...+........
T Consensus 315 ~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~ 392 (759)
T KOG0211|consen 315 KSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYP 392 (759)
T ss_pred hhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCccccc
Confidence 00001112355788999999999888888776654 22333556677788899999999998755444432221000
Q ss_pred CC------CCCCCCCCCCCCChHhh-------------HHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcc-c
Q psy14676 321 PL------TPSDPNQMDQEDSPLCL-------------LSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPG-C 380 (1827)
Q Consensus 321 ~~------~~~~~~~~~~~~~~~~~-------------l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~-~ 380 (1827)
.. |......++...+++.. ....++.+.|..+..++|..+.||....-.+..+-.+.+. .
T Consensus 393 ~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g 472 (759)
T KOG0211|consen 393 NIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIG 472 (759)
T ss_pred ccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCccc
Confidence 00 00000011222222222 3345777788899999999999999888655555554433 3
Q ss_pred ccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh-hhh
Q psy14676 381 LAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR-DLI 459 (1827)
Q Consensus 381 l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~-~~f 459 (1827)
...+-+.++|++.... .|.+||+|.+.++.++.++.+.| .+|
T Consensus 473 ~~~~s~slLp~i~el~-------------------------------------~d~~wRvr~ail~~ip~la~q~~~~~~ 515 (759)
T KOG0211|consen 473 ISTVSNSLLPAIVELA-------------------------------------EDLLWRVRLAILEYIPQLALQLGVEFF 515 (759)
T ss_pred chhhhhhhhhhhhhhc-------------------------------------cchhHHHHHHHHHHHHHHHHhhhhHHh
Confidence 3566678888887774 23589999999999999999999 777
Q ss_pred hhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhh
Q psy14676 460 GDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKS 539 (1827)
Q Consensus 460 ~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~ 539 (1827)
.+. +.+.+..|+.|.++.||..|..++..++..+|..|......|+..++..+++|.+|..+.+.+..+++.++...
T Consensus 516 ~~~---~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei 592 (759)
T KOG0211|consen 516 DEK---LAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI 592 (759)
T ss_pred hHH---HHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH
Confidence 765 66888999999999999999999999999999999999999999988888899999999999999999998764
Q ss_pred hhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhccccch-hhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHH
Q psy14676 540 IRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDD-DSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLF 615 (1827)
Q Consensus 540 ~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~-~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~ 615 (1827)
+...++|.+..+.+|++|||||++++-|...++- ++. .....+.+++..+..|++.+||++|..+.+.+.
T Consensus 593 --~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~----L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 593 --TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKL----LDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred --HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhh----cchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 6779999999999999999999999877766542 233 356778888888889999999999999887653
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-13 Score=188.81 Aligned_cols=351 Identities=15% Similarity=0.123 Sum_probs=237.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhch--
Q psy14676 36 RRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNL-- 112 (1827)
Q Consensus 36 ~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~-- 112 (1827)
...+|.|++.+.++ +..+|..|+..|+.+...-...-.. .+...++.|.+.|.+++..+|+.|+.+|++++..-++
T Consensus 445 ~ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir 523 (2102)
T PLN03200 445 REGVQLLISLLGLS-SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIR 523 (2102)
T ss_pred cCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence 44689999999865 7899999999999887533221111 1235688888999999999999999999999974221
Q ss_pred hHH--HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhC
Q psy14676 113 QLY--TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRC 190 (1827)
Q Consensus 113 ~~~--~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~ 190 (1827)
..+ ...++.+++.|.+. ++..++.++.+|..++...... .++.+...+..+++.++..++.+++.++...
T Consensus 524 ~iV~~aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~~-------~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~ 595 (2102)
T PLN03200 524 ACVESAGAVPALLWLLKNG-GPKGQEIAAKTLTKLVRTADAA-------TISQLTALLLGDLPESKVHVLDVLGHVLSVA 595 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhccchh-------HHHHHHHHhcCCChhHHHHHHHHHHHHHhhc
Confidence 112 13467777777654 6788999999999998754332 2233444456677888889998888887755
Q ss_pred CCc-cc-cc--hHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHH
Q psy14676 191 PKE-IT-PH--IQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAK 266 (1827)
Q Consensus 191 p~e-~~-p~--l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak 266 (1827)
..+ +. .. -...++.+.+.+... +-++++-|+.
T Consensus 596 ~~~d~~~~g~~~~ggL~~Lv~LL~sg--------------------------------------------s~~ikk~Aa~ 631 (2102)
T PLN03200 596 SLEDLVREGSAANDALRTLIQLLSSS--------------------------------------------KEETQEKAAS 631 (2102)
T ss_pred chhHHHHHhhhccccHHHHHHHHcCC--------------------------------------------CHHHHHHHHH
Confidence 432 11 00 012445555544321 1157888999
Q ss_pred HHHHHHHHcCCchhh-hHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhH
Q psy14676 267 CLEAIIATRRDLIGD-MYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVP 345 (1827)
Q Consensus 267 ~L~~l~~~~~~~l~~-~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp 345 (1827)
+|..+...+++.... +....+|.++..++..+.++|.++..+++.+.+.... .-...+ .-.
T Consensus 632 iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~----------------~q~~~~--v~~ 693 (2102)
T PLN03200 632 VLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKE----------------NRKVSY--AAE 693 (2102)
T ss_pred HHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCH----------------HHHHHH--HHc
Confidence 999999877764333 4457789999999999999999999999999852110 000111 112
Q ss_pred HHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCC
Q psy14676 346 SLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGE 425 (1827)
Q Consensus 346 ~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~ 425 (1827)
..+|.+++.|++++.+++..+...|..+.....+.-+-.-...+|.+.+.++.
T Consensus 694 GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~--------------------------- 746 (2102)
T PLN03200 694 DAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLRE--------------------------- 746 (2102)
T ss_pred CCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHh---------------------------
Confidence 25677888889999999999999999888876543211112447778888742
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHHHHHHHhh--hhhhhhHHh--hhhhHHHhhcchhhhhHH--HHHHHHHHHHh
Q psy14676 426 DDNEYSDDDDMSWKVRRAAAKCLEAIIATRR--DLIGDMYRL--VSPPLIARFKEREENVKS--DIFHAYMALLK 494 (1827)
Q Consensus 426 ~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~--~~f~~~~~~--l~~~L~~~~~d~~~~Vr~--~a~~~l~~L~~ 494 (1827)
.+.+.|+.|..+|..++...+ +.|..+... .+..|+..+.-...++-. +|++.+.-+.+
T Consensus 747 ----------G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~ 811 (2102)
T PLN03200 747 ----------GTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLAR 811 (2102)
T ss_pred ----------CChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHh
Confidence 134589999999999998877 446444333 467777777555443333 47777777765
|
|
| >KOG0211|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.4e-19 Score=224.70 Aligned_cols=543 Identities=15% Similarity=0.146 Sum_probs=383.8
Q ss_pred HHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhH
Q psy14676 873 NRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLK 952 (1827)
Q Consensus 873 r~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~ 952 (1827)
|.....-+..++.+.|...+ ..+++|++.+++ +++.++++.+-.-++.+ .++.+
T Consensus 99 r~~~~~~l~~~a~~~~~~~t--r~~lipf~~e~~-~~~dev~~~~a~~~~~~--------~~~v~--------------- 152 (759)
T KOG0211|consen 99 RLNSGRKLSNLALALGVERT--RLELIPFLTEAE-DDEDEVLLDLAEQLGTF--------LPDVG--------------- 152 (759)
T ss_pred hhhhhccccchhhhcccchh--hhhhhhHHHHhc-cchhHHHHHHHHHhccc--------chhcc---------------
Confidence 44444445556666777666 778999999998 77777766653322221 11100
Q ss_pred HHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCC
Q psy14676 953 QVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDP 1032 (1827)
Q Consensus 953 ~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~ 1032 (1827)
...+...++..+...+..++.++|+.+++++.+.+...+
T Consensus 153 -----------------------------------------~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~ 191 (759)
T KOG0211|consen 153 -----------------------------------------GPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGLP 191 (759)
T ss_pred -----------------------------------------chhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 112223333444444566788999999999988776655
Q ss_pred -----CCchHHHHHHhccCChhhHHHHHHHHHHHHHhcc-ccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHH
Q psy14676 1033 -----SNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQR-NDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEAL 1106 (1827)
Q Consensus 1033 -----~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~-~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl 1106 (1827)
+.++|.+.+...+.+.+.|..+|.+++..+...+ +.++. .+.|.+.+.+.|.+|+||..+.
T Consensus 192 ~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~-------------elr~~~~~lc~d~~~~Vr~~~a 258 (759)
T KOG0211|consen 192 KEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKR-------------ELRPIVQSLCQDDTPMVRRAVA 258 (759)
T ss_pred hHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHH-------------HHHHHHHhhccccchhhHHHHH
Confidence 3467777776677777899999999996666554 44443 4778888889999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhh
Q psy14676 1107 LVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLR 1186 (1827)
Q Consensus 1107 ~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~ 1186 (1827)
.-++.+++++.. . .....+...+..|. .|....||+.|+.++..+...+.... +....+.+.+++...
T Consensus 259 ~~l~~~a~~~~~------~----~~~s~v~~~~~~L~-~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~~ 326 (759)
T KOG0211|consen 259 SNLGNIAKVLES------E----IVKSEVLPTLIQLL-RDDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAVE 326 (759)
T ss_pred hhhHHHHHHHHH------H----HHHhhccHHHhhhh-hcchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHhc
Confidence 999999998752 1 12222222223333 37778899999999999998875533 667788889998888
Q ss_pred hhhh--HHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCC-cChHhHHHHHHHh
Q psy14676 1187 NEIT--RLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSA-ISTEMLNKVTVEL 1263 (1827)
Q Consensus 1187 ~e~t--R~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~-l~~~~~~~ll~~L 1263 (1827)
+..| |....+..-.+...... +....+.++.+...+++..+..|.+...-...+....... ...-..+.++|++
T Consensus 327 d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~ 403 (759)
T KOG0211|consen 327 DGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEV 403 (759)
T ss_pred ChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHH
Confidence 8877 55555554444432211 1122355677778889999999999999888888765532 1111234568899
Q ss_pred hhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhh-
Q psy14676 1264 APLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGS- 1342 (1827)
Q Consensus 1264 ~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~- 1342 (1827)
..++.|++.|++.........+.. .+|.. .+++.+.|.++..+++..++||.+-...+..
T Consensus 404 ~~lv~d~~~~vr~a~a~~~~~~~p----------------~~~k~---~ti~~llp~~~~~l~de~~~V~lnli~~ls~~ 464 (759)
T KOG0211|consen 404 QVLVLDNALHVRSALASVITGLSP----------------ILPKE---RTISELLPLLIGNLKDEDPIVRLNLIDKLSLL 464 (759)
T ss_pred HHHHhcccchHHHHHhccccccCc----------------cCCcC---cCccccChhhhhhcchhhHHHHHhhHHHHHHH
Confidence 999999999999875543322222 22211 2456799999999999999999999853322
Q ss_pred ------hhhhhhh-hhHHHHHHhhhcCchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHH-HHhhhhcCCchhHHH
Q psy14676 1343 ------IAVGNLQ-QYVPFVLKEIENQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWA-QLFLHCECQEEGTRN 1414 (1827)
Q Consensus 1343 ------i~~~~l~-~~LP~Il~~i~~~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~-~L~~~~~~~~e~vR~ 1414 (1827)
+|...++ ..||.|.....+ ..|++.+++.+.|+..+ .+.|. +|....+. .+...+.+....+|+
T Consensus 465 ~~v~~v~g~~~~s~slLp~i~el~~d---~~wRvr~ail~~ip~la-~q~~~----~~~~~~~~~l~~~~l~d~v~~Ir~ 536 (759)
T KOG0211|consen 465 EEVNDVIGISTVSNSLLPAIVELAED---LLWRVRLAILEYIPQLA-LQLGV----EFFDEKLAELLRTWLPDHVYSIRE 536 (759)
T ss_pred HhccCcccchhhhhhhhhhhhhhccc---hhHHHHHHHHHHHHHHH-Hhhhh----HHhhHHHHHHHHhhhhhhHHHHHH
Confidence 4544444 488999888766 58999999999998763 23342 22222222 222222333445999
Q ss_pred HHHHHHHHhhccCC-----CcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccC
Q psy14676 1415 VVAECLGKLTLIDP-----SNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLD 1489 (1827)
Q Consensus 1415 ~aAecLGkL~~~~p-----~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~ 1489 (1827)
.+|.++-+|+..+. ..++|++..+..++++..|.|++.++..+..--+..
T Consensus 537 ~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e------------------------- 591 (759)
T KOG0211|consen 537 AAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE------------------------- 591 (759)
T ss_pred HHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH-------------------------
Confidence 99999999998775 478899999999999999999999999776432211
Q ss_pred hhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhhhh
Q psy14676 1490 DDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGD 1569 (1827)
Q Consensus 1490 ~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a 1569 (1827)
-....++|.+..+..|+++|||+++++.|-++.+.+.....+..|.++...+..|++. |||+.|..++.+..
T Consensus 592 -i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~-------dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 592 -ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQEL-------DVRYRAILAFGSIE 663 (759)
T ss_pred -HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCccc-------chhHHHHHHHHHHH
Confidence 1335788999999999999999999999999999999999999999999988887654 99999999998875
Q ss_pred c
Q psy14676 1570 R 1570 (1827)
Q Consensus 1570 ~ 1570 (1827)
-
T Consensus 664 l 664 (759)
T KOG0211|consen 664 L 664 (759)
T ss_pred H
Confidence 4
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.8e-16 Score=180.95 Aligned_cols=627 Identities=13% Similarity=0.141 Sum_probs=383.7
Q ss_pred ccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhcc-CCCccchhhhhhhhHHHhhhhcccccchhh-hhhHHHHHHH
Q psy14676 671 ISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKI-QPNALVEPAAASILPQVLQIAKSPLLQGAA-LTSMLEFFKS 748 (1827)
Q Consensus 671 ~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~-~~~~~~~~~~~~llp~ll~l~~s~~~~~~a-l~~l~~~~~~ 748 (1827)
++++.-++|+....+.+..+.+.+++.|..++..|+.+ -|. ..||.++..+..-. ..-|..+ -...+..
T Consensus 87 ~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~----~~wp~lm~~mv~nv--g~eqp~~~k~~sl~~--- 157 (858)
T COG5215 87 MRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPN----SLWPGLMEEMVRNV--GDEQPVSGKCESLGI--- 157 (858)
T ss_pred CCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCcc----ccchHHHHHHHHhc--cccCchHhHHHHHHH---
Confidence 78888889999888888888899999999999988864 111 14665555554321 0000000 0111122
Q ss_pred HHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhh-----hHHHHHHHHhhccCCCchhHHHH
Q psy14676 749 LVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREAL-----PVVEKFLKELKTNKDDAHQVTIV 823 (1827)
Q Consensus 749 lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~-----~~v~~~l~~l~~~~~~~~~~~~~ 823 (1827)
.|+.|....++.+ -.+..+...-.++ ++ ++
T Consensus 158 ---------------------------------------~gy~ces~~Pe~li~~sN~il~aiv~ga~k~-et-~~---- 192 (858)
T COG5215 158 ---------------------------------------CGYHCESEAPEDLIQMSNVILFAIVMGALKN-ET-TS---- 192 (858)
T ss_pred ---------------------------------------HHHHhhccCHHHHHHHhhHHHHHHHHhhccc-Cc-hH----
Confidence 3444433333211 0011111111111 22 22
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhh-hcC---CCChhhHHHHHHHHHHHHHhccccchhhhhhhH
Q psy14676 824 ALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEG-LTT---NKSTSTNRTYIQCFAAICRQAGHRFAEHIERVM 899 (1827)
Q Consensus 824 ~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~-l~~---~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~il 899 (1827)
-+|-.|+.||.....+...++-.+-.+..+++ .+. .++..++.+++.|+..+..-++..+.+|+...+
T Consensus 193 --------avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL 264 (858)
T COG5215 193 --------AVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENAL 264 (858)
T ss_pred --------HHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 28889999999988999988888877766664 333 567789999999999999999999999999966
Q ss_pred HHHH-HhhcccchHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChHhHh-hhhhcccchh
Q psy14676 900 PLIL-KYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVK-SAASYTLGSI 977 (1827)
Q Consensus 900 P~ll-~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r-~~~~~~lg~~ 977 (1827)
-.+. ..+...+++| |++|.|+|.+.|..+++--+. ++.+.+ +- +..+
T Consensus 265 ~alt~~~mks~nd~v---a~qavEfWsticeEeid~~~e------------------~~~~pe----~p~qn~~------ 313 (858)
T COG5215 265 AALTGRFMKSQNDEV---AIQAVEFWSTICEEEIDGEME------------------DKYLPE----VPAQNHG------ 313 (858)
T ss_pred HHHHHHHhcCcchHH---HHHHHHHHHHHHHHHhhhHHH------------------Hhhccc----Cchhhcc------
Confidence 6655 4455666776 789999999999887654322 000000 00 0000
Q ss_pred hHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhh---HHHHHHhhhcccCCCCc----hHHHHHHhccCChhh
Q psy14676 978 AEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRN---VVAECLGKLTLIDPSNL----LPRLQESLKSNSALM 1050 (1827)
Q Consensus 978 ~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~---~a~e~Lg~L~~~~~~~l----lP~L~~~L~s~~~~~ 1050 (1827)
-...+...++|.+++.|-++=++.+++.|+ .|..||-.++...++.+ +..+.+.+++++|..
T Consensus 314 -----------fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~n 382 (858)
T COG5215 314 -----------FARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWAN 382 (858)
T ss_pred -----------hHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhh
Confidence 122345667899999888876666666664 57899988877766554 445566678999999
Q ss_pred HHHHHHHHH-HHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHH----hccCC-----
Q psy14676 1051 RTTHQSNQT-FNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKV----IRPLT----- 1120 (1827)
Q Consensus 1051 R~~a~~~L~-~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~----l~~~~----- 1120 (1827)
|+.++-++| .+--.+...+.++ +++.+|.+.....|+---|...+.++++.++.. +.|.+
T Consensus 383 reaavmAfGSvm~gp~~~~lT~~----------V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~ 452 (858)
T COG5215 383 REAAVMAFGSVMHGPCEDCLTKI----------VPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLE 452 (858)
T ss_pred HHHHHHHhhhhhcCccHHHHHhh----------HHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHH
Confidence 999999999 4444455566666 999999999888887755544444444443332 33221
Q ss_pred ---------------------------------CCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhh
Q psy14676 1121 ---------------------------------SPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLG 1167 (1827)
Q Consensus 1121 ---------------------------------~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g 1167 (1827)
.+....+.+|...|+..++......+.+...|-++.++||.++....
T Consensus 453 vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~ 532 (858)
T COG5215 453 VSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICP 532 (858)
T ss_pred HHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcc
Confidence 01112234555666666666555556778899999999999999887
Q ss_pred hhhhhhhhhhHHHHHHhhhhh-----------hh------HHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchh-
Q psy14676 1168 DYLKSELPVCLPILLDRLRNE-----------IT------RLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQ- 1229 (1827)
Q Consensus 1168 ~~l~~~l~~lL~~Ll~~L~~e-----------~t------R~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~- 1229 (1827)
+.+.+.+..++...++++... +. ..--+..+..|.... +-|.++.-..++..+.+.+.+.+
T Consensus 533 d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~-~~~ie~v~D~lm~Lf~r~les~~~ 611 (858)
T COG5215 533 DAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTR-RRDIEDVEDQLMELFIRILESTKP 611 (858)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc-CCCcccHHHHHHHHHHHHHhccCC
Confidence 766665555555555554432 11 111222334343322 23445444556777777776653
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhccccc
Q psy14676 1230 RALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHT 1309 (1827)
Q Consensus 1230 r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~ 1309 (1827)
..+-.-.+.+++.+..+.+.++. .+...++|.|.+-++..|..+...+.+.++.++......+ -+
T Consensus 612 t~~~~dV~~aIsal~~sl~e~Fe-~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df------------~~-- 676 (858)
T COG5215 612 TTAFGDVYTAISALSTSLEERFE-QYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDF------------NI-- 676 (858)
T ss_pred chhhhHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhH------------HH--
Confidence 34556677788877776444332 3677889999999999999999999999998887432111 11
Q ss_pred CCCchhhHHHHHHHhcCCC--CHhHHHHHHHHHhhhhh---hhhhhhHHHHHHhhhc----Cc--------hhhHHHHHH
Q psy14676 1310 DLTSVADLKQVILNAFTPT--SEEVKSAASYTLGSIAV---GNLQQYVPFVLKEIEN----QP--------KRQYLLLHS 1372 (1827)
Q Consensus 1310 ~~~~~~~l~~~~l~~~~~~--s~eVr~aAa~aLG~i~~---~~l~~~LP~Il~~i~~----~~--------~~q~~~l~a 1372 (1827)
.-..++..+.+++.++ ..++|-+.....|+|+. .++.+||-.|+-.... +| ..|-.++..
T Consensus 677 ---y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~ 753 (858)
T COG5215 677 ---YADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQL 753 (858)
T ss_pred ---HHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHH
Confidence 1145777778888765 45677777777787653 3788899888765432 11 122222333
Q ss_pred HHHHHhhcc-ccccchhhhhchHHHHHHHHhhhhcCCc--hhHHHHHHHHHHHhhccCCCc
Q psy14676 1373 LKEIISWQS-TSTSGVAQLQQFVPAIWAQLFLHCECQE--EGTRNVVAECLGKLTLIDPSN 1430 (1827)
Q Consensus 1373 L~Eii~~~~-~s~~g~~~L~~~~~~i~~~L~~~~~~~~--e~vR~~aAecLGkL~~~~p~~ 1430 (1827)
+-+....+. .+.--...+-||+..|+..+-...++.+ |.--+.+-.-+|-|+-.+|..
T Consensus 754 v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpkg 814 (858)
T COG5215 754 VNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKG 814 (858)
T ss_pred HHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCc
Confidence 322221111 1100023456888887766654333322 222234446677777777753
|
|
| >KOG1242|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-17 Score=198.43 Aligned_cols=533 Identities=13% Similarity=0.117 Sum_probs=359.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhc
Q psy14676 89 SSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYS 168 (1827)
Q Consensus 89 ~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~ 168 (1827)
.|+++.||+.-..|........+++...++++-.-+.|.+.....+|+..+-..|.++++.... .|....++..++..+
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~-d~~~~~~~~~~~~~~ 105 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIV-DPRPISIIEILLEEL 105 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhcccc-CcchhHHHHHHHHhc
Confidence 6788999999999999999988888888888877788876556778999999999999987632 223445666777777
Q ss_pred ccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCC
Q psy14676 169 REEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDN 248 (1827)
Q Consensus 169 ~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~ 248 (1827)
......+|+....++..+.-.....- -..+.+.+.+.+.- +
T Consensus 106 ~tps~~~q~~~~~~l~~~~~~~~~~~---~~~~l~~l~~ll~~-~----------------------------------- 146 (569)
T KOG1242|consen 106 DTPSKSVQRAVSTCLPPLVVLSKGLS---GEYVLELLLELLTS-T----------------------------------- 146 (569)
T ss_pred CCCcHHHHHHHHHHhhhHHHHhhccC---HHHHHHHHHHHhcc-c-----------------------------------
Confidence 77777777654444433332211110 11233333333321 0
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHcCC-chhhhHHhhhHHHHhhcCCCCHhH-HHHHHHHHHHHHhhhcccCCCCCCC
Q psy14676 249 EYSDDDDMSWKVRRAAAKCLEAIIATRRD-LIGDMYRLVSPPLIARFKEREENV-KSDIFHAYMALLKGTRTFSPLTPSD 326 (1827)
Q Consensus 249 e~sdddD~sWkVRraAak~L~~l~~~~~~-~l~~~~~~v~p~L~~~l~e~ee~V-R~aa~~al~~ll~~~~~~~~~~~~~ 326 (1827)
+..-|+.++..+..+....+. .+.+ ..++..|....++.+..- |..+..++.......+
T Consensus 147 --------~~~~~~~aa~~~ag~v~g~~i~~~~~--~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg--------- 207 (569)
T KOG1242|consen 147 --------KIAERAGAAYGLAGLVNGLGIESLKE--FGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG--------- 207 (569)
T ss_pred --------cHHHHhhhhHHHHHHHcCcHHhhhhh--hhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---------
Confidence 012355677777777765442 1221 123444555555555544 4456666665554433
Q ss_pred CCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcc-cccCchhhHHHHHHHHhhhhhcccCC
Q psy14676 327 PNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPG-CLAPSLPALIPDVTSVAEWDEEEGLG 405 (1827)
Q Consensus 327 ~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~-~l~~~l~~Llp~i~~~L~~~~~~~~~ 405 (1827)
...++++..++|.++....|+.+.||+++......+..+++. .....++++++.+...
T Consensus 208 -----------~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~---------- 266 (569)
T KOG1242|consen 208 -----------PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA---------- 266 (569)
T ss_pred -----------CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH----------
Confidence 223678889999999999999999999999999999998865 4444445544443332
Q ss_pred CCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHH
Q psy14676 406 GEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDI 485 (1827)
Q Consensus 406 ~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a 485 (1827)
.||-+.++++.++.++...+..+.-+++.++|.+...+.|.++.||.++
T Consensus 267 -------------------------------kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~ 315 (569)
T KOG1242|consen 267 -------------------------------KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAG 315 (569)
T ss_pred -------------------------------hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccc
Q psy14676 486 FHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMA 565 (1827)
Q Consensus 486 ~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a 565 (1827)
..++..+.+...- . ..+.++|.+.+.+.||.....
T Consensus 316 ~~~l~~~~svidN-----------------------~-------------------dI~~~ip~Lld~l~dp~~~~~--- 350 (569)
T KOG1242|consen 316 IETLLKFGSVIDN-----------------------P-------------------DIQKIIPTLLDALADPSCYTP--- 350 (569)
T ss_pred HHHHHHHHHhhcc-----------------------H-------------------HHHHHHHHHHHHhcCcccchH---
Confidence 9998888765430 1 123344555555555532111
Q ss_pred hHHHHHHHhhhccc-cchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhh
Q psy14676 566 TNDLMSELQKDSIK-LDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSF 644 (1827)
Q Consensus 566 ~~dl~~~~~~~~~~-~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~ 644 (1827)
..+..+.+...++ .++...+.++|.|.+.+++++.+.+..+...+|.+++-+.+ ..+++||+|+++|-|-..
T Consensus 351 -e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveD------p~~lapfl~~Llp~lk~~ 423 (569)
T KOG1242|consen 351 -ECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVED------PKDLAPFLPSLLPGLKEN 423 (569)
T ss_pred -HHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcC------HHHHhhhHHHHhhHHHHH
Confidence 2223333323333 45678899999999999999999999999999999988854 267889998888876644
Q ss_pred hhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhhhhHH
Q psy14676 645 LRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQ 724 (1827)
Q Consensus 645 l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~llp~ 724 (1827)
+... ++.++..+...++.+.+-- .+...+.++|.
T Consensus 424 ~~d~------------------------------------------~PEvR~vaarAL~~l~e~~----g~~~f~d~~p~ 457 (569)
T KOG1242|consen 424 LDDA------------------------------------------VPEVRAVAARALGALLERL----GEVSFDDLIPE 457 (569)
T ss_pred hcCC------------------------------------------ChhHHHHHHHHHHHHHHHH----HhhcccccccH
Confidence 3222 2333333333333222100 00012334444
Q ss_pred HhhhhcccccchhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHH
Q psy14676 725 VLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVE 804 (1827)
Q Consensus 725 ll~l~~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~ 804 (1827)
+.+...+....
T Consensus 458 l~e~~~~~k~~--------------------------------------------------------------------- 468 (569)
T KOG1242|consen 458 LSETLTSEKSL--------------------------------------------------------------------- 468 (569)
T ss_pred HHHhhccchhh---------------------------------------------------------------------
Confidence 43221000000
Q ss_pred HHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcC-CCChhhHHHHHHHHHHH
Q psy14676 805 KFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTT-NKSTSTNRTYIQCFAAI 883 (1827)
Q Consensus 805 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~-~~~~~vr~~~l~~l~~L 883 (1827)
.-|..+.+.|+.+....+.+.+.++++.++....+ ..++.+|.+++..+..+
T Consensus 469 ---------------------------~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~l 521 (569)
T KOG1242|consen 469 ---------------------------VDRSGAAQDLSEVLAGLGVEKVEDILPEILANASSVLIDERIRDGVIWLFYLL 521 (569)
T ss_pred ---------------------------hhhHHHhhhHHHHHhcccchHHHHHHHHHHHHHhhccchhhhccCeeehhhcc
Confidence 02223445566666666667777777777776544 45778999999999999
Q ss_pred HHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHh
Q psy14676 884 CRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQ 926 (1827)
Q Consensus 884 ~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~ 926 (1827)
+...+.+|.+|+.++++.+++.+.|.++.+|.+++++.+..+.
T Consensus 522 p~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~~~~~~~~ 564 (569)
T KOG1242|consen 522 PYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALEAGEVEVL 564 (569)
T ss_pred chhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhhhhhhhhc
Confidence 9999999999999999999999999999999999888776543
|
|
| >KOG0213|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.7e-14 Score=168.68 Aligned_cols=637 Identities=17% Similarity=0.224 Sum_probs=395.0
Q ss_pred HHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhH
Q psy14676 261 RRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLL 340 (1827)
Q Consensus 261 RraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l 340 (1827)
|.-..+.++.+.-...++..||.+.|+=++-.++-+++.-.|...-..++.|.+..|-+
T Consensus 417 rhllVkvidriLyklDdlvrpYVhkILvViepllided~yar~egreIisnLakaaGla--------------------- 475 (1172)
T KOG0213|consen 417 RHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLA--------------------- 475 (1172)
T ss_pred hhhHHHHHHHHHHhhcccchhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhhhH---------------------
Confidence 66688999999988888888888887655555555666777777766666666544321
Q ss_pred HhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCC
Q psy14676 341 STQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDG 420 (1827)
Q Consensus 341 ~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~ 420 (1827)
.++..+-.-....++=||....+.++..+..++ ++.++|.+..++..
T Consensus 476 -----~mistmrpDidn~deYVRnttarafavvasalg------ip~llpfLkavc~S---------------------- 522 (1172)
T KOG0213|consen 476 -----TMISTMRPDIDNKDEYVRNTTARAFAVVASALG------IPALLPFLKAVCGS---------------------- 522 (1172)
T ss_pred -----HHHHhhcCCcccccHHHHHHHHHHHHHHHHHhC------cHHHHHHHHHHhcc----------------------
Confidence 111111111223556688877777777777665 47888888888732
Q ss_pred CCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCC
Q psy14676 421 EDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFS 500 (1827)
Q Consensus 421 ~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~ 500 (1827)
.++|.-|+.-++|++.++.-.|-...||+..++..+-..+.|....||..+..++..|.+..+
T Consensus 523 --------------kkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~--- 585 (1172)
T KOG0213|consen 523 --------------KKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAAT--- 585 (1172)
T ss_pred --------------ccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcC---
Confidence 258999999999999999999999999999999999999999999999999998888887655
Q ss_pred CCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhcccc
Q psy14676 501 PLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKL 580 (1827)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~ 580 (1827)
|. .+ .+...+++-|-+..+. .++..+..+++.++...|.-+- + -
T Consensus 586 Py---------------gi--e~fDsVlkpLwkgir~----hrgk~laafLkAigyliplmd~--------e-------y 629 (1172)
T KOG0213|consen 586 PY---------------GI--EQFDSVLKPLWKGIRQ----HRGKELAAFLKAIGYLIPLMDA--------E-------Y 629 (1172)
T ss_pred Cc---------------ch--HHHHHHHHHHHHHHHH----ccChHHHHHHHHHhhccccccH--------H-------H
Confidence 22 10 1123344444433333 3444445444444433222110 0 0
Q ss_pred chhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHHH
Q psy14676 581 DDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLL 660 (1827)
Q Consensus 581 d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l 660 (1827)
-..+..+++-.+.+=.+-+|.|++..-.+.+.+++..-+
T Consensus 630 a~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~G----------------------------------------- 668 (1172)
T KOG0213|consen 630 ASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDG----------------------------------------- 668 (1172)
T ss_pred HHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccC-----------------------------------------
Confidence 012345566666666777777776655544433321111
Q ss_pred HHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhh--hhhhHHHhhhhcccccchhh
Q psy14676 661 DTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAA--ASILPQVLQIAKSPLLQGAA 738 (1827)
Q Consensus 661 ~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~--~~llp~ll~l~~s~~~~~~a 738 (1827)
+.+.| .+++|..+. +.-.+..|
T Consensus 669 -----------------------------------------------------v~~~y~r~dilp~ff~---~fw~rrmA 692 (1172)
T KOG0213|consen 669 -----------------------------------------------------VEPAYIRFDILPEFFF---SFWGRRMA 692 (1172)
T ss_pred -----------------------------------------------------CCHHHHhhhhhHHHHh---hhhhhhhh
Confidence 11111 234444331 11111111
Q ss_pred hhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCch
Q psy14676 739 LTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAH 818 (1827)
Q Consensus 739 l~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~ 818 (1827)
++ ...|.++++.-. +++..+|. .+.|.+++..+.+ .+.
T Consensus 693 ~d---------------rr~ykqlv~ttv---------------~ia~KvG~---------~~~v~R~v~~lkd---e~e 730 (1172)
T KOG0213|consen 693 LD---------------RRNYKQLVDTTV---------------EIAAKVGS---------DPIVSRVVLDLKD---EPE 730 (1172)
T ss_pred cc---------------ccchhhHHHHHH---------------HHHHHhCc---------hHHHHHHhhhhcc---ccH
Confidence 11 111222211100 22222222 2344445555543 111
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHH-HHHHHHHHHHh----hhcCCCChhhHHHHHHHHHHHHHhccccchh
Q psy14676 819 QVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQ-LYTKLIDFLLE----GLTTNKSTSTNRTYIQCFAAICRQAGHRFAE 893 (1827)
Q Consensus 819 ~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~-~~~~l~~~l~~----~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~ 893 (1827)
+.|+.+..+.+-++..++.. +=..+.+.++. .++.+... -.-.+..|+.++..++.+..|
T Consensus 731 -------------~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~--d~vml~gfg~V~~~lg~r~kp 795 (1172)
T KOG0213|consen 731 -------------QYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTE--DSVMLLGFGTVVNALGGRVKP 795 (1172)
T ss_pred -------------HHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccc--hhhhhhhHHHHHHHHhhcccc
Confidence 26677777766666655432 22333334444 44432221 225678999999999999999
Q ss_pred hhhhhHHHHHHhhcccchHHHHHHHHHHHHHHh---hCCCc-cccccccccccCCcchhhhhHHHHHhhcCCChHhHhhh
Q psy14676 894 HIERVMPLILKYSREEDDELREFCLQACEAFVQ---RCPKE-ITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSA 969 (1827)
Q Consensus 894 yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~---~~~~~-i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~ 969 (1827)
|++.|+-.++.-|+...+.+|+-|...+..+.. .|+.+ +--|++-+ |..
T Consensus 796 ylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv---------------LyE------------ 848 (1172)
T KOG0213|consen 796 YLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV---------------LYE------------ 848 (1172)
T ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH---------------HHH------------
Confidence 999999999999999999999888666554321 12111 11111100 000
Q ss_pred hhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHhccCChh
Q psy14676 970 ASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSAL 1049 (1827)
Q Consensus 970 ~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~~~ 1049 (1827)
.+..+. +.++|.|+
T Consensus 849 --------------------------------------ylgeey-------------------pEvLgsIL--------- 862 (1172)
T KOG0213|consen 849 --------------------------------------YLGEEY-------------------PEVLGSIL--------- 862 (1172)
T ss_pred --------------------------------------hcCccc-------------------HHHHHHHH---------
Confidence 000000 11222222
Q ss_pred hHHHHHHHHHHHHH-hccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCC--C
Q psy14676 1050 MRTTHQSNQTFNVI-IQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSY--D 1126 (1827)
Q Consensus 1050 ~R~~a~~~L~~l~~-~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~--~ 1126 (1827)
.+++++++ ++-....|= +..|+|.+...++....||...+...+|.++.. +++ .
T Consensus 863 ------gAikaI~nvigm~km~pP----------i~dllPrltPILknrheKVqen~IdLvg~Iadr-------gpE~v~ 919 (1172)
T KOG0213|consen 863 ------GAIKAIVNVIGMTKMTPP----------IKDLLPRLTPILKNRHEKVQENCIDLVGTIADR-------GPEYVS 919 (1172)
T ss_pred ------HHHHHHHHhccccccCCC----------hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc-------CcccCC
Confidence 22232222 222223333 667888888888999999999999988888853 111 1
Q ss_pred cchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh--HHHHHHHHHHHhcC
Q psy14676 1127 FAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT--RLTTVKALTKIAAS 1204 (1827)
Q Consensus 1127 ~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t--R~~av~al~~ia~~ 1204 (1827)
.+.|+.-+|. +++.|. ....++|++|..++|.+.+..|. +.+|..|++.|+-+.- |..+.-|++.+++.
T Consensus 920 aREWMRIcfe-LlelLk--ahkK~iRRaa~nTfG~IakaIGP------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~ 990 (1172)
T KOG0213|consen 920 AREWMRICFE-LLELLK--AHKKEIRRAAVNTFGYIAKAIGP------QDVLATLLNNLKVQERQNRVCTTVAIAIVAET 990 (1172)
T ss_pred HHHHHHHHHH-HHHHHH--HHHHHHHHHHHhhhhHHHHhcCH------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhh
Confidence 2356666665 556666 44679999999999999999886 4678888888876543 88888888888875
Q ss_pred CCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHH
Q psy14676 1205 PLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTS 1284 (1827)
Q Consensus 1205 ~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~ 1284 (1827)
. .|| .++|.|..--|-.+-.+....+.++..+....+. .+.+++-.+.|-|...+.|.|+.-|+.+..++..
T Consensus 991 c-----~pF--tVLPalmneYrtPe~nVQnGVLkalsf~Feyige-mskdYiyav~PlleDAlmDrD~vhRqta~~~I~H 1062 (1172)
T KOG0213|consen 991 C-----GPF--TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGE-MSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKH 1062 (1172)
T ss_pred c-----Cch--hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHH-HhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHH
Confidence 3 223 3577777777778888999999999998886554 4556777888888889999999999999999998
Q ss_pred HHHhCCC
Q psy14676 1285 IAKIQPN 1291 (1827)
Q Consensus 1285 l~~~~~~ 1291 (1827)
++...+.
T Consensus 1063 l~Lg~~g 1069 (1172)
T KOG0213|consen 1063 LALGVPG 1069 (1172)
T ss_pred HhcCCCC
Confidence 8876553
|
|
| >KOG0915|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-14 Score=188.59 Aligned_cols=333 Identities=16% Similarity=0.200 Sum_probs=236.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhccCC--CCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHH
Q psy14676 42 LSTAIEKQEDVSVQLEALDILSDLLSRFGAL--LPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLI 119 (1827)
Q Consensus 42 Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~--l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~ 119 (1827)
|...+. +++|+.|.+++--|=.+..++|.+ +.....+|+.++...|++.+.-++.-|...+|-+=+.-....-..++
T Consensus 823 l~~~~~-s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~LV 901 (1702)
T KOG0915|consen 823 LDTLLT-SPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSLV 901 (1702)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHHH
Confidence 334444 468999999999988888888843 44456799999999999999999999999988766654444445566
Q ss_pred HHHHHhccCC--------C------------CHH-HHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccC-chHHHH
Q psy14676 120 DFLLEGLTTN--------K------------STS-TNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREE-DDELRE 177 (1827)
Q Consensus 120 ~~ll~~L~~~--------~------------~~~-~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~-~delRe 177 (1827)
+.|+..|... + +++ -.-+..+=+.++|.-.++. +++=-+++..+.. .=--|.
T Consensus 902 ~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qP------dLVYKFM~LAnh~A~wnSk~ 975 (1702)
T KOG0915|consen 902 DSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQP------DLVYKFMQLANHNATWNSKK 975 (1702)
T ss_pred HHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCCh------HHHHHHHHHhhhhchhhccc
Confidence 6666665210 0 010 0112223344444443321 1111122222211 000134
Q ss_pred HHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccch
Q psy14676 178 FCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMS 257 (1827)
Q Consensus 178 ~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~s 257 (1827)
.|.-+|.++..+.++.+.||++.+||.+.+| +|||+.
T Consensus 976 GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY-~yDP~~------------------------------------------ 1012 (1702)
T KOG0915|consen 976 GAAFGFGAIAKQAGEKLEPYLKKLIPRLYRY-QYDPDK------------------------------------------ 1012 (1702)
T ss_pred chhhchHHHHHHHHHhhhhHHHHhhHHHhhh-ccCCcH------------------------------------------
Confidence 5556688889999999999999999999998 788764
Q ss_pred hhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChH
Q psy14676 258 WKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPL 337 (1827)
Q Consensus 258 WkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1827)
+|+++.+.-.++++.-....+..||..|+..|+..+.++||.||.+++.|+..+++. .+.
T Consensus 1013 -~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g-------------------~~~ 1072 (1702)
T KOG0915|consen 1013 -KVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQG-------------------RPF 1072 (1702)
T ss_pred -HHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcC-------------------CCh
Confidence 688888888888887666788899999999999999999999999999999999953 133
Q ss_pred hhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhC---ccc-----ccCchhhHHHHHHHHhhhhhcccCCCCCC
Q psy14676 338 CLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTL---PGC-----LAPSLPALIPDVTSVAEWDEEEGLGGEGG 409 (1827)
Q Consensus 338 ~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl---~~~-----l~~~l~~Llp~i~~~L~~~~~~~~~~~~~ 409 (1827)
..+...+|.+..++.+.+.|-...||.++-.+...+.... .+. -...+..++|.+..- ..
T Consensus 1073 ~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~------------gi 1140 (1702)
T KOG0915|consen 1073 DQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDE------------GI 1140 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhcc------------Cc
Confidence 5678889999999999999988899998777766665443 221 123445555553221 11
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhh
Q psy14676 410 GEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREEN 480 (1827)
Q Consensus 410 ~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~ 480 (1827)
|+ ..-.+|+.++..+..++++.|..+.||+++|+|.|+..+..-++.
T Consensus 1141 ---ms---------------------~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~ 1187 (1702)
T KOG0915|consen 1141 ---MS---------------------KVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQ 1187 (1702)
T ss_pred ---cc---------------------chHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchH
Confidence 11 112399999999999999999999999999999999887766553
|
|
| >KOG0213|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.1e-13 Score=159.51 Aligned_cols=647 Identities=15% Similarity=0.203 Sum_probs=404.6
Q ss_pred HHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhh
Q psy14676 8 LRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQ 87 (1827)
Q Consensus 8 ~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~ 87 (1827)
+|...+-|..++++.|. ...|+|+|-....+..++.-|..++.|..+++.-.|-.+-+|...++.++-.+
T Consensus 492 VRnttarafavvasalg----------ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~g 561 (1172)
T KOG0213|consen 492 VRNTTARAFAVVASALG----------IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHG 561 (1172)
T ss_pred HHHHHHHHHHHHHHHhC----------cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHh
Confidence 44444444444444442 25577877655555558999999999999999999998888888999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhch---hHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHH-HHHHH
Q psy14676 88 LSSPRQAVRKRTIVALSHLVMSCNL---QLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIE-RVMPL 163 (1827)
Q Consensus 88 L~~~~~~VRk~Ai~aL~~l~~~~~~---~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~-~i~p~ 163 (1827)
|.|.+..||--+..|++.+++...+ +.|+.++..|.+++.++... .-...+.++|.++-........|+. ++|-.
T Consensus 562 l~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk-~laafLkAigyliplmd~eya~yyTrevmli 640 (1172)
T KOG0213|consen 562 LKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGK-ELAAFLKAIGYLIPLMDAEYASYYTREVMLI 640 (1172)
T ss_pred hcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccCh-HHHHHHHHHhhccccccHHHHHHhHHHHHHH
Confidence 9999999999999999999998765 46777888888887664332 2344556666665444444444443 66666
Q ss_pred HHhhcccCchHHHHHHHHHHHHHHHhCCCcccc-ch-HHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCC
Q psy14676 164 ILKYSREEDDELREFCLQACEAFVQRCPKEITP-HI-QSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGE 241 (1827)
Q Consensus 164 l~~~~~~~~delRe~al~ale~~~~~~p~e~~p-~l-~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~d 241 (1827)
+..-...+|+|.+...+-.++..+..-+ +.| |+ ..++|..++..
T Consensus 641 l~rEf~sPDeemkkivLKVv~qcc~t~G--v~~~y~r~dilp~ff~~f-------------------------------- 686 (1172)
T KOG0213|consen 641 LIREFGSPDEEMKKIVLKVVKQCCATDG--VEPAYIRFDILPEFFFSF-------------------------------- 686 (1172)
T ss_pred HHHhhCCChHHHHHHHHHHHHHHhcccC--CCHHHHhhhhhHHHHhhh--------------------------------
Confidence 6666666788877655443332222111 111 21 23444444321
Q ss_pred CCCCCCCCCCCCccchhhHHHHHH---------HHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHH
Q psy14676 242 DEGEDDNEYSDDDDMSWKVRRAAA---------KCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMAL 312 (1827)
Q Consensus 242 de~e~~~e~sdddD~sWkVRraAa---------k~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~l 312 (1827)
|. ||.|. ..--.++...|- ..++.-++.-+++..|..|.-+..+...+
T Consensus 687 ----------------w~-rrmA~drr~ykqlv~ttv~ia~KvG~------~~~v~R~v~~lkde~e~yrkm~~etv~ri 743 (1172)
T KOG0213|consen 687 ----------------WG-RRMALDRRNYKQLVDTTVEIAAKVGS------DPIVSRVVLDLKDEPEQYRKMVAETVSRI 743 (1172)
T ss_pred ----------------hh-hhhhccccchhhHHHHHHHHHHHhCc------hHHHHHHhhhhccccHHHHHHHHHHHHHH
Confidence 21 22211 111123333231 12233344556788888999999888888
Q ss_pred HhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHH
Q psy14676 313 LKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDV 392 (1827)
Q Consensus 313 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i 392 (1827)
+...+... .--..-+..+..|+-++..+ ...+. ..+..|+.++..+++-..+|+++|+..+
T Consensus 744 ~~~lg~~d--------------iderleE~lidgil~Afqeq----tt~d~-vml~gfg~V~~~lg~r~kpylpqi~sti 804 (1172)
T KOG0213|consen 744 VGRLGAAD--------------IDERLEERLIDGILYAFQEQ----TTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTI 804 (1172)
T ss_pred Hhcccccc--------------ccHHHHHHHHHHHHHHHHhc----ccchh-hhhhhHHHHHHHHhhccccchHHHHHHH
Confidence 75443211 00122233444444444443 22222 3455567888888888899999999999
Q ss_pred HHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhh-hhhhHHhhhhhHH
Q psy14676 393 TSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDL-IGDMYRLVSPPLI 471 (1827)
Q Consensus 393 ~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~-f~~~~~~l~~~L~ 471 (1827)
+..|+. ++-++|..|++.++.++.....- =...+.++--.|.
T Consensus 805 L~rLnn-------------------------------------ksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLy 847 (1172)
T KOG0213|consen 805 LWRLNN-------------------------------------KSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLY 847 (1172)
T ss_pred HHHhcC-------------------------------------CChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHH
Confidence 999843 34569999999999888554411 0112344556678
Q ss_pred HhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHH
Q psy14676 472 ARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLR 551 (1827)
Q Consensus 472 ~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~ 551 (1827)
..+++.|++|--..+..+..+..+.|.++-. +-+..++.++..+++....|....|+..+.
T Consensus 848 EylgeeypEvLgsILgAikaI~nvigm~km~-------------------pPi~dllPrltPILknrheKVqen~IdLvg 908 (1172)
T KOG0213|consen 848 EYLGEEYPEVLGSILGAIKAIVNVIGMTKMT-------------------PPIKDLLPRLTPILKNRHEKVQENCIDLVG 908 (1172)
T ss_pred HhcCcccHHHHHHHHHHHHHHHHhccccccC-------------------CChhhhcccchHhhhhhHHHHHHHHHHHHH
Confidence 8899999999999999999999999854322 112355666777777777777777776553
Q ss_pred HhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCccccccc
Q psy14676 552 ELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLR 631 (1827)
Q Consensus 552 ~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~ 631 (1827)
. +.|.-|. |.....-+.+ -=-|+.+|.--+.++|..|+..+|-++|++|.
T Consensus 909 ~-IadrgpE--~v~aREWMRI----------------cfeLlelLkahkK~iRRaa~nTfG~IakaIGP----------- 958 (1172)
T KOG0213|consen 909 T-IADRGPE--YVSAREWMRI----------------CFELLELLKAHKKEIRRAAVNTFGYIAKAIGP----------- 958 (1172)
T ss_pred H-HHhcCcc--cCCHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH-----------
Confidence 2 2233232 3322222111 11245566667789999999999999999997
Q ss_pred ccccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCC
Q psy14676 632 PILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPN 711 (1827)
Q Consensus 632 ~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~ 711 (1827)
.+++-.|...|+-+.|+.|.++-.++.-+- +.+.
T Consensus 959 ---qdVLatLlnnLkvqeRq~RvcTtvaIaIVa-----------------E~c~-------------------------- 992 (1172)
T KOG0213|consen 959 ---QDVLATLLNNLKVQERQNRVCTTVAIAIVA-----------------ETCG-------------------------- 992 (1172)
T ss_pred ---HHHHHHHHhcchHHHHHhchhhhhhhhhhh-----------------hhcC--------------------------
Confidence 235677888888899888887544443331 1100
Q ss_pred ccchhhhhhhhHHHhhhhc--ccccchhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHH
Q psy14676 712 ALVEPAAASILPQVLQIAK--SPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVA 789 (1827)
Q Consensus 712 ~~~~~~~~~llp~ll~l~~--s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g 789 (1827)
-=.++|.+++=-. .-.+|-+-|.+|-.+|.-+- +.++.+.+.+.+.|...++.....|+|.-.++++-++
T Consensus 993 ------pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyig--emskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 993 ------PFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIG--EMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred ------chhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHH--HHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence 0124566555222 22345666777777775443 2455666777777776665554455554333333111
Q ss_pred HHHHHhhhhhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcCCCC
Q psy14676 790 ALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKS 869 (1827)
Q Consensus 790 ~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~~~~ 869 (1827)
. + ...+-.++.+.++++.+...+- +++
T Consensus 1065 L---------------------------------------------------g-~~g~g~eda~iHLLN~iWpNIl-e~s 1091 (1172)
T KOG0213|consen 1065 L---------------------------------------------------G-VPGTGCEDALIHLLNLIWPNIL-ETS 1091 (1172)
T ss_pred c---------------------------------------------------C-CCCcCcHHHHHHHHHHhhhhhc-CCC
Confidence 1 0 1112234455555555444332 468
Q ss_pred hhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCcccccccccc
Q psy14676 870 TSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIG 940 (1827)
Q Consensus 870 ~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~ 940 (1827)
|++...+..++..+..+.|. ..++.+++++|=.....||+.-+...+.+--.....+.+++|.+.
T Consensus 1092 Phviqa~~e~~eg~r~~Lg~------~~~~~Y~~QGLFHParkVR~~yw~vyn~my~~~~dalv~~ypv~e 1156 (1172)
T KOG0213|consen 1092 PHVIQAFDEAMEGLRVALGP------QAMLKYCLQGLFHPARKVRKRYWTVYNSMYHGSQDALVACYPVEE 1156 (1172)
T ss_pred hHHHHHHHHHHHHHHHHhch------HHHHHHHHHhccCcHHHHHHHHHHHHHhHhhcccchhhhccccCC
Confidence 89999999999999999886 567888888888888889999888887766666666777776443
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.8e-13 Score=158.04 Aligned_cols=537 Identities=15% Similarity=0.175 Sum_probs=327.8
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCC
Q psy14676 436 MSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDS 515 (1827)
Q Consensus 436 ~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~ 515 (1827)
++|.-|+.-+.|+++++.-.|....+|+..++..+-.++.|++..||..+..++.-|.+..| |.
T Consensus 329 kSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~---Py------------- 392 (975)
T COG5181 329 KSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVG---PY------------- 392 (975)
T ss_pred cchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcC---Cc-------------
Confidence 58999999999999999999988889999999999999999999999999999888887765 22
Q ss_pred ccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHH
Q psy14676 516 PVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRL 595 (1827)
Q Consensus 516 ~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~ 595 (1827)
. ...+..+.+-+.+...+.++..+..+++.++...| .|..+ --.+...+.+..+++.
T Consensus 393 --g------ie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iip---lm~pe------------Ya~h~tre~m~iv~re 449 (975)
T COG5181 393 --G------IEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIP---LMSPE------------YACHDTREHMEIVFRE 449 (975)
T ss_pred --c------hHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccc---cCChH------------hhhhhHHHHHHHHHHH
Confidence 1 12344444555555555566666666666654333 11110 0013456788888888
Q ss_pred hhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHH
Q psy14676 596 LEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEM 675 (1827)
Q Consensus 596 l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~ 675 (1827)
++.++.+.+..-...+..+.+ + + ++.+.-
T Consensus 450 f~spdeemkk~~l~v~~~C~~-v-------------------------------------------------~-~~tp~~ 478 (975)
T COG5181 450 FKSPDEEMKKDLLVVERICDK-V-------------------------------------------------G-TDTPWK 478 (975)
T ss_pred hCCchhhcchhHHHHHHHHhc-c-------------------------------------------------C-CCCHHH
Confidence 888887655432221111100 0 0 000000
Q ss_pred HHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhhhhHHHhhhhcccccchhhhhhHHHHHHHHHhhhCC
Q psy14676 676 LNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELP 755 (1827)
Q Consensus 676 ~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~llp~ll~l~~s~~~~~~al~~l~~~~~~lv~~~~~ 755 (1827)
-..++.|.+.+- ||.-=+ ...
T Consensus 479 -----------------------------------------lr~~v~pefF~~----------------fw~rr~--A~d 499 (975)
T COG5181 479 -----------------------------------------LRDQVSPEFFSP----------------FWRRRS--AGD 499 (975)
T ss_pred -----------------------------------------HHHhhcHHhhch----------------HHHhhh--ccc
Confidence 001122222110 000000 000
Q ss_pred CCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhH
Q psy14676 756 GLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQ 835 (1827)
Q Consensus 756 ~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~ 835 (1827)
...+ ||.... ..+-+..-....+++|++.-+++-+++ .|+
T Consensus 500 r~~~------------------k~v~~t------tvilAk~~g~~~v~~kil~~~~De~ep----------------~r~ 539 (975)
T COG5181 500 RRSY------------------KQVVLT------TVILAKMGGDPRVSRKILEYYSDEPEP----------------YRK 539 (975)
T ss_pred cccc------------------ceeehh------HHHHHHHcCChHHHHHHHhhccCCcch----------------hhh
Confidence 0000 000000 000001111234556777777652222 566
Q ss_pred HHHHHHHHHHhhhcH-----HHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccc
Q psy14676 836 LTIVALSHLVMSCNL-----QLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREED 910 (1827)
Q Consensus 836 ~Ai~aL~~l~~~~~~-----~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~ 910 (1827)
.+..+.+-++..++. .+-..+...++-.++.+. ..-.-++.+|+.+..+.+-+..||++.|+..+++-|....
T Consensus 540 m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~--~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~ 617 (975)
T COG5181 540 MNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQD--TTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKP 617 (975)
T ss_pred hhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcc--ccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCC
Confidence 666666555554442 222333333333443321 2234466788888888899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHh---hCCC-ccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhccc
Q psy14676 911 DELREFCLQACEAFVQ---RCPK-EITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQST 986 (1827)
Q Consensus 911 ~~vre~al~Ale~~v~---~~~~-~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~ 986 (1827)
+.+|+-|...++.+.. .|+. +...+++- +
T Consensus 618 p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~---------------i-------------------------------- 650 (975)
T COG5181 618 PDVRIRAADLMGSLAKVLKACGETKELAKLGN---------------I-------------------------------- 650 (975)
T ss_pred ccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH---------------H--------------------------------
Confidence 9999888776665321 1211 01111110 0
Q ss_pred ccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHhccCChhhHHHHHHHHHHHH-Hhc
Q psy14676 987 STSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNV-IIQ 1065 (1827)
Q Consensus 987 ~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~-~~~ 1065 (1827)
| .|.||+- .+.++|.+++ ++..++ .+.
T Consensus 651 ------------------L---------------yE~lge~----ypEvLgsil~---------------Ai~~I~sv~~ 678 (975)
T COG5181 651 ------------------L---------------YENLGED----YPEVLGSILK---------------AICSIYSVHR 678 (975)
T ss_pred ------------------H---------------HHhcCcc----cHHHHHHHHH---------------HHHHHhhhhc
Confidence 0 0001000 0112222222 222222 233
Q ss_pred cccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhc
Q psy14676 1066 RNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAA 1145 (1827)
Q Consensus 1066 ~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~ 1145 (1827)
-..++|- +..|+|.+...++....||.......++.+.+. .| .--..+.|+.-.|. +++.|.
T Consensus 679 ~~~mqpP----------i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~-~p----eyi~~rEWMRIcfe-Lvd~Lk-- 740 (975)
T COG5181 679 FRSMQPP----------ISGILPSLTPILRNKHQKVVANTIALVGTICMN-SP----EYIGVREWMRICFE-LVDSLK-- 740 (975)
T ss_pred ccccCCc----------hhhccccccHhhhhhhHHHhhhHHHHHHHHHhc-Cc----ccCCHHHHHHHHHH-HHHHHH--
Confidence 3445565 778888888889999999999888888887753 11 11123456666665 556666
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhh--hHHHHHHHHHHHhcCCCccccchhhhhhHhhhhh
Q psy14676 1146 DIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEI--TRLTTVKALTKIAASPLRIDLRPILTDGIPILGS 1223 (1827)
Q Consensus 1146 D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~--tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~ 1223 (1827)
..+.|+|+.|..++|-+....|. +.+|.+|++.|+-+. .|..+.-|++.+++... || .++|.|.+
T Consensus 741 s~nKeiRR~A~~tfG~Is~aiGP------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-----pf--sVlP~lm~ 807 (975)
T COG5181 741 SWNKEIRRNATETFGCISRAIGP------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-----PF--SVLPTLMS 807 (975)
T ss_pred HhhHHHHHhhhhhhhhHHhhcCH------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-----ch--hhHHHHHh
Confidence 56789999999999999998886 568888999987654 38888888888887532 22 35787777
Q ss_pred hhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccc
Q psy14676 1224 FLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALV 1294 (1827)
Q Consensus 1224 ~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~ 1294 (1827)
--+-.+..+....+.|+..+....+.+ +-+++-.+.|-|...+.|.|+.-|+.+.+.+..++..+|....
T Consensus 808 dY~TPe~nVQnGvLkam~fmFeyig~~-s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~ 877 (975)
T COG5181 808 DYETPEANVQNGVLKAMCFMFEYIGQA-SLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGD 877 (975)
T ss_pred cccCchhHHHHhHHHHHHHHHHHHHHH-HHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCccc
Confidence 777788889999999999988875542 3356777888888899999999999999999999988776544
|
|
| >KOG0915|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.2e-10 Score=145.47 Aligned_cols=607 Identities=14% Similarity=0.185 Sum_probs=363.0
Q ss_pred HHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhH
Q psy14676 283 YRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRT 362 (1827)
Q Consensus 283 ~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~v 362 (1827)
...+...|.....++++..|.++.--+-.+++..+.. .......+.|..++...|.|.+.=+
T Consensus 816 ~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~------------------~~v~l~~~eI~~aF~~~Lsd~dEf~ 877 (1702)
T KOG0915|consen 816 ETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQ------------------PEVVLMLKEIQEAFSHLLSDNDEFS 877 (1702)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccC------------------chhhhccHHHHHHHHHHhcccHHHH
Confidence 3345555666778899999999886666666443211 1234456777788888888887766
Q ss_pred HHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCC--------CCCCc-------cc---CCCCCC
Q psy14676 363 RQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGE--------GMDTE-------EE---DGEDEG 424 (1827)
Q Consensus 363 R~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~--------~~~~e-------~e---d~~~~~ 424 (1827)
...+-.-++-+=+...+.+. ..++.++...|.. ..++...-++++ +-+++ -| -.+|-+
T Consensus 878 QDvAsrGlglVYelgd~~~k---~~LV~sL~~tl~~-Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~ 953 (1702)
T KOG0915|consen 878 QDVASRGLGLVYELGDSSLK---KSLVDSLVNTLTG-GKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG 953 (1702)
T ss_pred HHHHhcCceEEEecCCchhH---HHHHHHHHHHHhc-cccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC
Confidence 66665444432222222333 6777887777754 112111111100 00000 00 012222
Q ss_pred CCCCCCC----CCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCC
Q psy14676 425 EDDNEYS----DDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFS 500 (1827)
Q Consensus 425 ~~~~e~~----d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~ 500 (1827)
..|.-|. -.-...|.-|.+|+-.++.+++..|+.+.||+.+|+|.|...=.|....|+.+....-..|+.-..
T Consensus 954 qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k--- 1030 (1702)
T KOG0915|consen 954 QPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSK--- 1030 (1702)
T ss_pred ChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChH---
Confidence 2222221 012356888999999999999999999999999999999999999999999988877666653211
Q ss_pred CCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhcccc
Q psy14676 501 PLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKL 580 (1827)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~ 580 (1827)
..+-.....+++.+...++++.|+.|..+=-++..++..++ ..+.
T Consensus 1031 -----------------~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~----------~~~~-------- 1075 (1702)
T KOG0915|consen 1031 -----------------KVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRP----------FDQV-------- 1075 (1702)
T ss_pred -----------------HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCC----------hHHH--------
Confidence 12334567889999999999999988844333433333221 1111
Q ss_pred chhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHHH
Q psy14676 581 DDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLL 660 (1827)
Q Consensus 581 d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l 660 (1827)
.+-.+++|..++|.++|....||+.|-++...+.|.+-.+.
T Consensus 1076 -~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~-------------------------------------- 1116 (1702)
T KOG0915|consen 1076 -KEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRIC-------------------------------------- 1116 (1702)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------------------------------------
Confidence 13467899999999999999999988775544432222100
Q ss_pred HHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhhhhHHHhhhhcccccchhhhh
Q psy14676 661 DTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAALT 740 (1827)
Q Consensus 661 ~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~llp~ll~l~~s~~~~~~al~ 740 (1827)
+. ...+...+...-++|-++
T Consensus 1117 --------d~--------------------------------------~~~~~~~~~l~~iLPfLl-------------- 1136 (1702)
T KOG0915|consen 1117 --------DV--------------------------------------TNGAKGKEALDIILPFLL-------------- 1136 (1702)
T ss_pred --------cc--------------------------------------CCcccHHHHHHHHHHHHh--------------
Confidence 00 000000001111222221
Q ss_pred hHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchhH
Q psy14676 741 SMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQV 820 (1827)
Q Consensus 741 ~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~ 820 (1827)
T Consensus 1137 -------------------------------------------------------------------------------- 1136 (1702)
T KOG0915|consen 1137 -------------------------------------------------------------------------------- 1136 (1702)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHh-hhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhH
Q psy14676 821 TIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLE-GLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVM 899 (1827)
Q Consensus 821 ~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~-~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~il 899 (1827)
. ++. +.-+.+|+..+.++.-|++++|..+.||+++++
T Consensus 1137 -----------------------------------------~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LI 1174 (1702)
T KOG0915|consen 1137 -----------------------------------------DEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLI 1174 (1702)
T ss_pred -----------------------------------------ccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhhHHH
Confidence 1 011 223578899999999999999999999999999
Q ss_pred HHHHHhhcccchHH-HHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhh
Q psy14676 900 PLILKYSREEDDEL-REFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIA 978 (1827)
Q Consensus 900 P~ll~~l~d~~~~v-re~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~ 978 (1827)
|.+++....-++.| -=.++++.+. . ..+ -++.|..++...
T Consensus 1175 p~ll~~~s~lE~~vLnYls~r~~~~----------------e---------------~ea----lDt~R~s~akss---- 1215 (1702)
T KOG0915|consen 1175 PLLLNAYSELEPQVLNYLSLRLINI----------------E---------------TEA----LDTLRASAAKSS---- 1215 (1702)
T ss_pred HHHHHHccccchHHHHHHHHhhhhh----------------H---------------HHH----HHHHHHhhhcCC----
Confidence 99999876533333 1111111000 0 000 001111111110
Q ss_pred HhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHhccC-ChhhHHHHHHH
Q psy14676 979 EIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSN-SALMRTTHQSN 1057 (1827)
Q Consensus 979 ~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~-~~~~R~~a~~~ 1057 (1827)
| .|+.+ ..|+.-+=.-..+.++|.+.+.++++ .-.+|.++.++
T Consensus 1216 -----------------p----mmeTi---------------~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~f 1259 (1702)
T KOG0915|consen 1216 -----------------P----MMETI---------------NKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASF 1259 (1702)
T ss_pred -----------------c----HHHHH---------------HHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHH
Confidence 0 11111 11111111112356789999999766 46799999999
Q ss_pred HHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHH
Q psy14676 1058 QTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQC 1137 (1827)
Q Consensus 1058 L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ 1137 (1827)
+..++...+..++|| .+.++..++..++|++.-++..-..++|.+++.=.| ..+..+++.+...
T Consensus 1260 I~~L~~r~~~emtP~----------sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~------dq~qKLie~~l~~ 1323 (1702)
T KOG0915|consen 1260 ISLLVQRLGSEMTPY----------SGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSP------DQMQKLIETLLAD 1323 (1702)
T ss_pred HHHHHHHhccccCcc----------hhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999888999999975322 2344555555444
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHH--HHHHHHHhcCCCccccchhhh
Q psy14676 1138 TLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTT--VKALTKIAASPLRIDLRPILT 1215 (1827)
Q Consensus 1138 ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~a--v~al~~ia~~~~~~dl~p~~~ 1215 (1827)
++.. +.+ .+..++..+..+..+..+.+++|-..++|.+.=....|.--... -+.+..+... ...-+.-|..
T Consensus 1324 ~l~k----~es--~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsg-gagtvrl~~~ 1396 (1702)
T KOG0915|consen 1324 LLGK----DES--LKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEKANQELWNDVWAELVSG-GAGTVRLYLL 1396 (1702)
T ss_pred Hhcc----CCC--ccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCC-CcchhhhhHH
Confidence 4332 222 23567777777888888899999999999887665544210000 1122333221 1111222445
Q ss_pred hhHhhhhhhhcchh-HHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcC
Q psy14676 1216 DGIPILGSFLRKNQ-RALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVS 1268 (1827)
Q Consensus 1216 ~~l~~L~~~Lrk~~-r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~ 1268 (1827)
+++-.+......++ |.+|..+..++...+....+..+.+.+..+.+.+...+.
T Consensus 1397 eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~ 1450 (1702)
T KOG0915|consen 1397 EILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLN 1450 (1702)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhh
Confidence 55555444444444 999999999998887766655554445555555544443
|
|
| >KOG1242|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-11 Score=149.38 Aligned_cols=430 Identities=20% Similarity=0.208 Sum_probs=301.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHH
Q psy14676 36 RRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLY 115 (1827)
Q Consensus 36 ~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~ 115 (1827)
..+.|.--+.+.+..+..+|+..+- +...+.++++..++.-..++..++..++.|.+.||.....|+..+........-
T Consensus 54 ~~l~~~~~~~l~~~~~~~~~~~~~v-~~~~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~ 132 (569)
T KOG1242|consen 54 LNLKPCFEQRLNSLHNDNLRNNVVV-LEGTLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG 132 (569)
T ss_pred HHHHHHHHHHhccchhHHHhhhhHH-HHHHHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH
Confidence 4455555566655545556655544 444445555555555557899999999999999999999999998887765544
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhch-hhHHhHHHHHHHHHhhcccC-chHHHHHHHHHHHHHHHhCCCc
Q psy14676 116 TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGH-RFAEHIERVMPLILKYSREE-DDELREFCLQACEAFVQRCPKE 193 (1827)
Q Consensus 116 ~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~-~~~p~l~~i~p~l~~~~~~~-~delRe~al~ale~~~~~~p~e 193 (1827)
..+.+.+.+.+. ..+...|+.+...+..+.+..+. .+.++ .++--+....++. ...-||.++.+++.+....+..
T Consensus 133 ~~~l~~l~~ll~-~~~~~~~~~aa~~~ag~v~g~~i~~~~~~--~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~ 209 (569)
T KOG1242|consen 133 EYVLELLLELLT-STKIAERAGAAYGLAGLVNGLGIESLKEF--GFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPP 209 (569)
T ss_pred HHHHHHHHHHhc-cccHHHHhhhhHHHHHHHcCcHHhhhhhh--hHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCC
Confidence 444444455554 34456677777777777665442 23321 2344444455543 4445678899999999999999
Q ss_pred cccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHH
Q psy14676 194 ITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIA 273 (1827)
Q Consensus 194 ~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~ 273 (1827)
+.||+..++|.++..... ..-+||.+|..+..++..
T Consensus 210 ~EPyiv~~lp~il~~~~d--------------------------------------------~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 210 FEPYIVPILPSILTNFGD--------------------------------------------KINKVREAAVEAAKAIMR 245 (569)
T ss_pred CCchHHhhHHHHHHHhhc--------------------------------------------cchhhhHHHHHHHHHHHH
Confidence 999999999999875411 112699999999999998
Q ss_pred HcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHH
Q psy14676 274 TRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQC 353 (1827)
Q Consensus 274 ~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~ 353 (1827)
+.+.+- .+.++|.++..+.+.-|.-+.+++..++.+... ....++..+|.++|-+.+
T Consensus 246 ~~~~~a---VK~llpsll~~l~~~kWrtK~aslellg~m~~~--------------------ap~qLs~~lp~iiP~lse 302 (569)
T KOG1242|consen 246 CLSAYA---VKLLLPSLLGSLLEAKWRTKMASLELLGAMADC--------------------APKQLSLCLPDLIPVLSE 302 (569)
T ss_pred hcCcch---hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh--------------------chHHHHHHHhHhhHHHHH
Confidence 876432 445667766666666899999999999977732 236789999999999999
Q ss_pred HhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCC
Q psy14676 354 QLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDD 433 (1827)
Q Consensus 354 ~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~ 433 (1827)
.|.|.+++||.++...+..+..++-. +-+..++|.+.+++.+...+
T Consensus 303 vl~DT~~evr~a~~~~l~~~~svidN---~dI~~~ip~Lld~l~dp~~~------------------------------- 348 (569)
T KOG1242|consen 303 VLWDTKPEVRKAGIETLLKFGSVIDN---PDIQKIIPTLLDALADPSCY------------------------------- 348 (569)
T ss_pred HHccCCHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHhcCcccc-------------------------------
Confidence 99999999999999999988888754 33788889888888542111
Q ss_pred CcccHHHHHHHHHHHHHHHHHhh-hhh-hhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccc
Q psy14676 434 DDMSWKVRRAAAKCLEAIIATRR-DLI-GDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMD 511 (1827)
Q Consensus 434 ~d~~w~vr~~a~~~l~~l~~~~~-~~f-~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~ 511 (1827)
..+|+..+..+.. ... .|-+.-++|.+-..+++|...++..+...+..+.+
T Consensus 349 ----------~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~----------------- 401 (569)
T KOG1242|consen 349 ----------TPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCK----------------- 401 (569)
T ss_pred ----------hHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH-----------------
Confidence 1355555555444 333 36777888888888888877666555544333332
Q ss_pred cCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHH
Q psy14676 512 QEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKM 591 (1827)
Q Consensus 512 ~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~ 591 (1827)
...|+ +++. .+.++++|.
T Consensus 402 -----------------------------------------LveDp---------~~la------------pfl~~Llp~ 419 (569)
T KOG1242|consen 402 -----------------------------------------LVEDP---------KDLA------------PFLPSLLPG 419 (569)
T ss_pred -----------------------------------------hhcCH---------HHHh------------hhHHHHhhH
Confidence 11111 1111 245677888
Q ss_pred HHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhh-hhhhhhHHHHHHHHhhCCCc
Q psy14676 592 LLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQR-ALKLSTLLLLDTLLVNYPSA 670 (1827)
Q Consensus 592 l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~-~lk~~~l~~l~~l~~~~~~~ 670 (1827)
+...+.|..+|||..|.++||.+++.++.. ..+..+|++.+.++.... .-|..+...+..++..++-.
T Consensus 420 lk~~~~d~~PEvR~vaarAL~~l~e~~g~~-----------~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~ 488 (569)
T KOG1242|consen 420 LKENLDDAVPEVRAVAARALGALLERLGEV-----------SFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVE 488 (569)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHHhh-----------cccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccch
Confidence 888899999999999999999999999973 236778999999988754 46777778888877666543
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-10 Score=137.16 Aligned_cols=723 Identities=15% Similarity=0.161 Sum_probs=412.5
Q ss_pred hHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhc
Q psy14676 33 NVCRRITGKLSTA-IEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCN 111 (1827)
Q Consensus 33 ~v~~~L~P~Ll~~-l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~ 111 (1827)
.+..+++|.|++- ++++ -|+-....+..++..+++...+|--.||-.+-+.|-++++.+|-..-.-+.+++..|+
T Consensus 203 ~vfnkvLp~lm~r~LeDq----erhl~vk~idr~Ly~lddl~~pyvhkILvVv~pllided~~~r~~g~eii~nL~~~~G 278 (975)
T COG5181 203 AVFNKVLPMLMSRELEDQ----ERHLVVKLIDRLLYGLDDLKVPYVHKILVVVGPLLIDEDLKRRCMGREIILNLVYRCG 278 (975)
T ss_pred HHHHHHHHHHHhhhhhhh----hhHhHHHHHHHHHHhcccccccceeeEEEEeeccccCccHHHhcccHHHHHHHHHHhc
Confidence 4667777877653 2322 2455566666777777776666655667666777788888888776666777766664
Q ss_pred hhHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccC-chHHHHHHHHHHHHHH
Q psy14676 112 LQLYTKLIDFLLEGLT---TNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREE-DDELREFCLQACEAFV 187 (1827)
Q Consensus 112 ~~~~~~l~~~ll~~L~---~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~-~delRe~al~ale~~~ 187 (1827)
=. ..+..+. .+.++-+|...-.++|.++.+.+ ++++.|++-..|... .-+-|..+......++
T Consensus 279 l~-------~~vs~mrpDi~~~deYVRnvt~ra~~vva~alg------v~~llpfl~a~c~SrkSw~aRhTgiri~qqI~ 345 (975)
T COG5181 279 LG-------FSVSSMRPDITSKDEYVRNVTGRAVGVVADALG------VEELLPFLEALCGSRKSWEARHTGIRIAQQIC 345 (975)
T ss_pred cc-------eeeeeccCCcccccHHHHHHHHHHHHHHHHhhC------cHHHHHHHHHHhcCccchhhhchhhHHHHHHH
Confidence 22 1222221 12456788888888888887665 677888888887643 5566666666556666
Q ss_pred HhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHH
Q psy14676 188 QRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKC 267 (1827)
Q Consensus 188 ~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~ 267 (1827)
...+...-+|+..++..+-+.++. .+-.||--+|.+
T Consensus 346 ~llG~s~l~hl~~l~~ci~~~l~D--------------------------------------------~~~~vRi~tA~a 381 (975)
T COG5181 346 ELLGRSRLSHLGPLLKCISKLLKD--------------------------------------------RSRFVRIDTANA 381 (975)
T ss_pred HHhCccHHhhhhhHHHHHHHHhhc--------------------------------------------cceeeeehhHhH
Confidence 666777778888888777665521 123688889999
Q ss_pred HHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHH
Q psy14676 268 LEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSL 347 (1827)
Q Consensus 268 L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~I 347 (1827)
|..++...+++-...|..++-.|-+. ++.--=..|.+++++++-..+ . |++ ++....-...
T Consensus 382 lS~lae~~~Pygie~fd~vl~pLw~g-------~~~hrgk~l~sfLkA~g~iip--l-----m~p-----eYa~h~tre~ 442 (975)
T COG5181 382 LSYLAELVGPYGIEQFDEVLCPLWEG-------ASQHRGKELVSFLKAMGFIIP--L-----MSP-----EYACHDTREH 442 (975)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHH-------HHhcCCchHHHHHHHhccccc--c-----CCh-----HhhhhhHHHH
Confidence 99999988877777777776666433 222223345566666653221 1 111 2333345566
Q ss_pred HHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCC
Q psy14676 348 VKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDD 427 (1827)
Q Consensus 348 v~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~ 427 (1827)
++.+.+.++.++.+-.....-+...+..+.+..-..+..++.|...+..
T Consensus 443 m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~f------------------------------- 491 (975)
T COG5181 443 MEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPF------------------------------- 491 (975)
T ss_pred HHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchH-------------------------------
Confidence 7778888877776666555555555554443333334455555554443
Q ss_pred CCCCCCCcccHHHHHH--------HHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccC
Q psy14676 428 NEYSDDDDMSWKVRRA--------AAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTF 499 (1827)
Q Consensus 428 ~e~~d~~d~~w~vr~~--------a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~ 499 (1827)
|+=|.| ...+-..+++..|. +..+..++.-+.|.-+--|.-+......++..+|.
T Consensus 492 ----------w~rr~A~dr~~~k~v~~ttvilAk~~g~------~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~- 554 (975)
T COG5181 492 ----------WRRRSAGDRRSYKQVVLTTVILAKMGGD------PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGR- 554 (975)
T ss_pred ----------HHhhhcccccccceeehhHHHHHHHcCC------hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhccc-
Confidence 221111 11333344444441 12334455556666555666666666666655552
Q ss_pred CCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhh-----------------hhhHHhHHHHHHHhhcCCCcccc
Q psy14676 500 SPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKS-----------------IRTRQDCLALLRELMTSSDKDFR 562 (1827)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~-----------------~~~~~~~l~~l~~~~~d~dpd~R 562 (1827)
.+++.+ +.-.....++.++.++..... -+...-++..++..++.+-||+|
T Consensus 555 ---~~~dEr----------leerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR 621 (975)
T COG5181 555 ---LGFDER----------LEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVR 621 (975)
T ss_pred ---ccccHH----------HHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHH
Confidence 111100 111223444455554432111 11233456667788899999999
Q ss_pred ccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhh
Q psy14676 563 FMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILG 642 (1827)
Q Consensus 563 f~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~ 642 (1827)
.-+++-.....+-=.......-..++=..|..-++...+||--+-.+++..+....+- . .++|-..+++|.|.
T Consensus 622 ~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~---~----~mqpPi~~ilP~lt 694 (975)
T COG5181 622 IRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRF---R----SMQPPISGILPSLT 694 (975)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcc---c----ccCCchhhcccccc
Confidence 8887644333221000011112233344466677777777655544444433322221 1 23455556666666
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhhhh
Q psy14676 643 SFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASIL 722 (1827)
Q Consensus 643 ~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~ll 722 (1827)
-.||+-.+-...++..++..+..+.+..+++..-..+.=++..++-.-...++..|-
T Consensus 695 PILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~----------------------- 751 (975)
T COG5181 695 PILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNAT----------------------- 751 (975)
T ss_pred HhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhh-----------------------
Confidence 667777777777788888888666565555444433333332222211222221111
Q ss_pred HHHhhhhcccccchhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhH
Q psy14676 723 PQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPV 802 (1827)
Q Consensus 723 p~ll~l~~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~ 802 (1827)
+-||-+.++ .+--++|+.|++.+....
T Consensus 752 ---------------------~tfG~Is~a----iGPqdvL~~LlnnLkvqe---------------------------- 778 (975)
T COG5181 752 ---------------------ETFGCISRA----IGPQDVLDILLNNLKVQE---------------------------- 778 (975)
T ss_pred ---------------------hhhhhHHhh----cCHHHHHHHHHhcchHHH----------------------------
Confidence 112222221 112344444444332100
Q ss_pred HHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHH
Q psy14676 803 VEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAA 882 (1827)
Q Consensus 803 v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~ 882 (1827)
.+.|...-.|++-+...++.= .+++.+..-- +.|...|+.+++.++.+
T Consensus 779 ----------------------------Rq~RvctsvaI~iVae~cgpf---sVlP~lm~dY-~TPe~nVQnGvLkam~f 826 (975)
T COG5181 779 ----------------------------RQQRVCTSVAISIVAEYCGPF---SVLPTLMSDY-ETPEANVQNGVLKAMCF 826 (975)
T ss_pred ----------------------------HHhhhhhhhhhhhhHhhcCch---hhHHHHHhcc-cCchhHHHHhHHHHHHH
Confidence 012223334444444444431 1112211111 14667899999999999
Q ss_pred HHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCC
Q psy14676 883 ICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPT 962 (1827)
Q Consensus 883 L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~ 962 (1827)
+.+-.|+.=..|+--+.|.+-+++.|.|.--|.+|...+.-++.+|+...
T Consensus 827 mFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg------------------------------ 876 (975)
T COG5181 827 MFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTG------------------------------ 876 (975)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcc------------------------------
Confidence 99999999999999999999999999999999999877766655553311
Q ss_pred hHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCC-CCchHHHHH
Q psy14676 963 SEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDP-SNLLPRLQE 1041 (1827)
Q Consensus 963 ~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~-~~llP~L~~ 1041 (1827)
.. +++...+.-+|+ .+-++++.+.+..-||+..++...+ ..++-.+.+
T Consensus 877 -------------~e--------------da~IHLlNllwp----NIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~q 925 (975)
T COG5181 877 -------------DE--------------DAAIHLLNLLWP----NILEPSPHVIQSFDEGMESFATVLGSGAMMKYVQQ 925 (975)
T ss_pred -------------cH--------------HHHHHHHHHhhh----hccCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 10 111111222222 2234555566656677766665544 557889999
Q ss_pred HhccCChhhHHHHHHHHHHHHHhcccccccc
Q psy14676 1042 SLKSNSALMRTTHQSNQTFNVIIQRNDIHNH 1072 (1827)
Q Consensus 1042 ~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~ 1072 (1827)
.|-.++.++|..-+..+..++.-..+.+.||
T Consensus 926 GLFHPs~~VRk~ywtvyn~myv~~~damvp~ 956 (975)
T COG5181 926 GLFHPSSTVRKRYWTVYNIMYVFDSDAMVPC 956 (975)
T ss_pred hccCchHHHHHHHHHHHhhhhhccccccccc
Confidence 9999999999999999988877777777776
|
|
| >KOG1248|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.6e-07 Score=120.14 Aligned_cols=406 Identities=14% Similarity=0.165 Sum_probs=246.9
Q ss_pred hhHHHHHHHHHHHHHhc--cccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCccccccccccccCCcchh
Q psy14676 871 STNRTYIQCFAAICRQA--GHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSV 948 (1827)
Q Consensus 871 ~vr~~~l~~l~~L~~~~--~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~ 948 (1827)
..+.-+.|+|+-|+.-| |-.+..-++.+-|.+..++.... ++|.+-+++|..++..+...-.+ -....-.+.+
T Consensus 490 ~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~~~a----~e~~e~~s~~ 564 (1176)
T KOG1248|consen 490 LYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRP-ELRETICNSLRMLVEQNKPSSDA----AENKEVLSND 564 (1176)
T ss_pred HHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCcchH----HHHHHHHhhh
Confidence 56778889999998874 66677779999999999987655 99999999999999876310000 0000000011
Q ss_pred -hhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhh
Q psy14676 949 -ADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKL 1027 (1827)
Q Consensus 949 -~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L 1027 (1827)
....+.+|+.|+..... +.+.+....+.|.......++....++..-..+.+|.+
T Consensus 565 AknfL~~lfn~ytq~~~~------------------------~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~ 620 (1176)
T KOG1248|consen 565 AKNFLPRLFNVYTQTVAA------------------------GRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGEL 620 (1176)
T ss_pred hhHHHHHHHHHhcCCCcc------------------------ccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhH
Confidence 13345666666531100 00111111111111111111111111111111222221
Q ss_pred cccCCCCchHHHHHHhccC-ChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHh-hcCCchhhHHHH
Q psy14676 1028 TLIDPSNLLPRLQESLKSN-SALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIAS-VGDNFYKITAEA 1105 (1827)
Q Consensus 1028 ~~~~~~~llP~L~~~L~s~-~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~-l~D~~~~V~~eA 1105 (1827)
+ .+. .+......+++|..+....+-.= ++. +..+. .+..- .+...++++..+
T Consensus 621 a---------------s~~~~s~~~~~~~slLdl~~~~a~~~~------e~~----vs~l~-~v~~~~e~~~~~~vQkK~ 674 (1176)
T KOG1248|consen 621 A---------------SDLDESVASFKTLSLLDLLIALAPVQT------ESQ----VSKLF-TVDPEFENSSSTKVQKKA 674 (1176)
T ss_pred h---------------ccchhhhhhHHHHHHHHHHHhhhcccc------chh----HHHHH-HhhHHhhccccHHHHHHH
Confidence 1 111 12233344444443322222111 111 22222 22222 233468899999
Q ss_pred HHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhh
Q psy14676 1106 LLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRL 1185 (1827)
Q Consensus 1106 l~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L 1185 (1827)
.+.++++... |. +..-...++..|+..+.+.+. +.+.-.|..++.|+..++...+.......+..+|-++=.+
T Consensus 675 yrlL~~l~~~--~s---~~~~~~q~i~~I~n~L~ds~q--s~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~ 747 (1176)
T KOG1248|consen 675 YRLLEELSSS--PS---GEGLVEQRIDDIFNSLLDSFQ--SSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL 747 (1176)
T ss_pred HHHHHHHhcC--Cc---hhhHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Confidence 9998888754 11 112234578889998888877 6667789999999999999888544455666666655555
Q ss_pred h--hhhhHHHHHHHHHHHh--cCCCccccch---hhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHH
Q psy14676 1186 R--NEITRLTTVKALTKIA--ASPLRIDLRP---ILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNK 1258 (1827)
Q Consensus 1186 ~--~e~tR~~av~al~~ia--~~~~~~dl~p---~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ 1258 (1827)
+ |+..|..|-..|-.|+ .+.....-+| .+++.++.+...+-.....++..++-++..++..+..-++.+++..
T Consensus 748 Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~ 827 (1176)
T KOG1248|consen 748 KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEK 827 (1176)
T ss_pred ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 4 3345777777777766 3222111123 6777777777666555555666669999999999988899999999
Q ss_pred HHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHH
Q psy14676 1259 VTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASY 1338 (1827)
Q Consensus 1259 ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~ 1338 (1827)
++..+.-.|..+.++++.+|+..+..++...|.... . ...+.+++.++...++..-.+|..+=.
T Consensus 828 li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l-----------~-----~~~~~LL~sll~ls~d~k~~~r~Kvr~ 891 (1176)
T KOG1248|consen 828 LISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECL-----------S-----PHLEELLPSLLALSHDHKIKVRKKVRL 891 (1176)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHH-----------h-----hhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999999999999999987774311 1 123678999999888888899998866
Q ss_pred HHhh----hhhhhhhhhHHH
Q psy14676 1339 TLGS----IAVGNLQQYVPF 1354 (1827)
Q Consensus 1339 aLG~----i~~~~l~~~LP~ 1354 (1827)
-|.. .|.+.+..|+|.
T Consensus 892 LlekLirkfg~~eLe~~~pe 911 (1176)
T KOG1248|consen 892 LLEKLIRKFGAEELESFLPE 911 (1176)
T ss_pred HHHHHHHHhCHHHHHhhCHH
Confidence 5544 467778888883
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-09 Score=140.98 Aligned_cols=426 Identities=17% Similarity=0.192 Sum_probs=296.8
Q ss_pred HHHHHHhhhhccccchhhHHHHHHhhhcccC-CCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhh
Q psy14676 1001 IWAQLFLHCECQEEGTRNVVAECLGKLTLID-PSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFI 1079 (1827)
Q Consensus 1001 ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~-~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~ 1079 (1827)
..+.+.+-+.++.+.+|..|.++|+.++... .+.++|.+.+.+.++++.+|..|+.++..++...++.
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~----------- 148 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL----------- 148 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC-----------
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH-----------
Confidence 3455566667888889989999999887442 2568899999999999999999999999887776665
Q ss_pred hhhhhh-hhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy14676 1080 YSFYYF-LLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISC 1158 (1827)
Q Consensus 1080 ~~~l~~-Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~a 1158 (1827)
++. +++.+.+.+.|+++.|+..|+.++.++ +.- ...+...+..++..+...+. +.++-++..++..
T Consensus 149 ---~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~-------~~~~~~~~~~~~~~L~~~l~--~~~~~~q~~il~~ 215 (526)
T PF01602_consen 149 ---VEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCN-------DDSYKSLIPKLIRILCQLLS--DPDPWLQIKILRL 215 (526)
T ss_dssp ---HHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCT-------HHHHTTHHHHHHHHHHHHHT--CCSHHHHHHHHHH
T ss_pred ---HHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccC-------cchhhhhHHHHHHHhhhccc--ccchHHHHHHHHH
Confidence 334 789999999999999999999999888 210 01112456666665555554 7777788888887
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHhhhhhh--hHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHH
Q psy14676 1159 MGQIICNLGDYLKSELPVCLPILLDRLRNEI--TRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLST 1236 (1827)
Q Consensus 1159 lg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~--tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~a 1236 (1827)
+..+.......-. . ..+++.+...+.+.. .+.++++++-.+... .+.+..+++.+..++..++..+|..+
T Consensus 216 l~~~~~~~~~~~~-~-~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~------~~~~~~~~~~L~~lL~s~~~nvr~~~ 287 (526)
T PF01602_consen 216 LRRYAPMEPEDAD-K-NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS------PELLQKAINPLIKLLSSSDPNVRYIA 287 (526)
T ss_dssp HTTSTSSSHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS------HHHHHHHHHHHHHHHTSSSHHHHHHH
T ss_pred HHhcccCChhhhh-H-HHHHHHHHHHhhccccHHHHHHHHHHHHhhcc------hHHHHhhHHHHHHHhhcccchhehhH
Confidence 7765432211110 0 456777777666443 488899988877654 23567889999999998889999999
Q ss_pred HHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhh
Q psy14676 1237 LLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVAD 1316 (1827)
Q Consensus 1237 l~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~ 1316 (1827)
+.+|..++...+..+. ..-..+..+..+.|..++..++++|..++... ....
T Consensus 288 L~~L~~l~~~~~~~v~-----~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~-----------------------n~~~ 339 (526)
T PF01602_consen 288 LDSLSQLAQSNPPAVF-----NQSLILFFLLYDDDPSIRKKALDLLYKLANES-----------------------NVKE 339 (526)
T ss_dssp HHHHHHHCCHCHHHHG-----THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH-----------------------HHHH
T ss_pred HHHHHHhhcccchhhh-----hhhhhhheecCCCChhHHHHHHHHHhhccccc-----------------------chhh
Confidence 9999999887522221 11111234446899999999999999887621 2356
Q ss_pred HHHHHHHhcC-CCCHhHHHHHHHHHhhhhhh---hhhhhHHHHHHhhhcC-chhhHHHHHHHHHHHhhccccccchhhhh
Q psy14676 1317 LKQVILNAFT-PTSEEVKSAASYTLGSIAVG---NLQQYVPFVLKEIENQ-PKRQYLLLHSLKEIISWQSTSTSGVAQLQ 1391 (1827)
Q Consensus 1317 l~~~~l~~~~-~~s~eVr~aAa~aLG~i~~~---~l~~~LP~Il~~i~~~-~~~q~~~l~aL~Eii~~~~~s~~g~~~L~ 1391 (1827)
+++.+.+.+. .++.++|..++.++|.++.. ....|+..+++.+... .....-++..+..++... .+++
T Consensus 340 Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~-------~~~~ 412 (526)
T PF01602_consen 340 ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNN-------PELR 412 (526)
T ss_dssp HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHS-------TTTH
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcC-------hhhh
Confidence 7788888884 44788999999999997754 4467999999988753 334445677788877631 1222
Q ss_pred chHHHHHHHHhhhhc-CCchhHHHHHHHHHHHhhccCCC-----cchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCC
Q psy14676 1392 QFVPAIWAQLFLHCE-CQEEGTRNVVAECLGKLTLIDPS-----NLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSS 1465 (1827)
Q Consensus 1392 ~~~~~i~~~L~~~~~-~~~e~vR~~aAecLGkL~~~~p~-----~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~ 1465 (1827)
..+...+++.+. ..++..+.+++.++|.-+...+. .++..+.+.....++.+|..+++++-.+....+..
T Consensus 413 ---~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~- 488 (526)
T PF01602_consen 413 ---EKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPEN- 488 (526)
T ss_dssp ---HHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCST-
T ss_pred ---HHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCch-
Confidence 223334444432 34566899999999999986665 56677777777788889999999888877643321
Q ss_pred ChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhc--CCchHHHHHHHHHhhhh
Q psy14676 1466 DKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLE--DKNGEVQNLAVKCLGPL 1522 (1827)
Q Consensus 1466 d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~--D~~~~Vr~~a~~~Lg~L 1522 (1827)
. ..+.+...+..... +.+++||..|...++-|
T Consensus 489 --~-----------------------~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 489 --E-----------------------VQNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp --T-----------------------HHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred --h-----------------------hHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 0 12356678888877 88999999998876654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG1248|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-06 Score=111.08 Aligned_cols=814 Identities=16% Similarity=0.150 Sum_probs=423.7
Q ss_pred HHHHHHHhhCCCCCh-hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchh--HHHHHHHhhhcCC
Q psy14676 14 IGLKTVISELPLGSN-ALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFH--FVILTALLPQLSS 90 (1827)
Q Consensus 14 ~~Lktvi~~lp~~~~-~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~--~~il~~ll~~L~~ 90 (1827)
-.|-.++.-.|.+.- +-.......+.|.+. .+ ..+..|...++.+|+.++..-+-.-=++. -+.+..++...-|
T Consensus 73 ~LL~li~~~VPs~vL~~kFs~~~~~l~~~~~--~~-stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h 149 (1176)
T KOG1248|consen 73 YLLVLILKYVPSPVLQAKFSDTLNILAPFLT--AE-STNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAH 149 (1176)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHHh--hh-cccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhc
Confidence 456666777776431 222355666777775 22 34788999999999999987322111111 2455556666679
Q ss_pred CCHHHHHHHHHHHHHHHHhhc---hh------HHHHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHhchhhHHhHHHH
Q psy14676 91 PRQAVRKRTIVALSHLVMSCN---LQ------LYTKLIDFLLEGLTT-NKSTSTNRTYIQCFAAICRQAGHRFAEHIERV 160 (1827)
Q Consensus 91 ~~~~VRk~Ai~aL~~l~~~~~---~~------~~~~l~~~ll~~L~~-~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i 160 (1827)
+.|.||++|..++..+...-+ +. ....+.-..++.... .....+- ..+..|-.+..+-| .+.+..+
T Consensus 150 ~~pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~-~~L~Ll~~~~~~~p---~~li~sl 225 (1176)
T KOG1248|consen 150 KKPKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVL-RSLMLLRDVLSTFP---RPLIKSL 225 (1176)
T ss_pred CchHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHH-HHHHHHHHhhccCC---HHHHHHH
Confidence 999999999999999877321 11 111122222222211 1111111 11222222222212 3456677
Q ss_pred HHHHHhhcccCchHHHHHHHHHHHHHHHhCCCcccc-chHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccC
Q psy14676 161 MPLILKYSREEDDELREFCLQACEAFVQRCPKEITP-HIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEED 239 (1827)
Q Consensus 161 ~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p-~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d 239 (1827)
...++..+...+-.++-.|+|+++.+...-|..... ..-.++..+ +.|.|.-+
T Consensus 226 ~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al---~~l~ps~~----------------------- 279 (1176)
T KOG1248|consen 226 CEVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTAL---MTLSPSEN----------------------- 279 (1176)
T ss_pred HHHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH---HHhCCCcc-----------------------
Confidence 788888888888889999999999998877662211 111122222 23433210
Q ss_pred CCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhccc
Q psy14676 240 GEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTF 319 (1827)
Q Consensus 240 ~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~ 319 (1827)
++---..|- .+..++...++...++....-.+.+++.+...+.+..+++-.++-.++..+++...
T Consensus 280 -----------D~~~t~~W~--~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv-- 344 (1176)
T KOG1248|consen 280 -----------DDLLTVAWL--KVLNEAHDILATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKESV-- 344 (1176)
T ss_pred -----------chHHHHHHH--HHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccC--
Confidence 000012342 23444445555544444333455566666666667777777777788877774211
Q ss_pred CCCCCCCCCCCCCCCChHhhHHhhhHHHHHH-HHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhh
Q psy14676 320 SPLTPSDPNQMDQEDSPLCLLSTQVPSLVKA-LQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEW 398 (1827)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~-l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~ 398 (1827)
+ ..+.+... +...|.=+...+-.-+++++..+.+.+|.-..+|+...+..|... +.
T Consensus 345 ------------------~----~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~l-r~ 401 (1176)
T KOG1248|consen 345 ------------------T----VIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKCGELSGPELTKTLEGLCDL-RA 401 (1176)
T ss_pred ------------------c----ccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHh-hc
Confidence 0 22223322 455555555566667888888888888764454443333333222 00
Q ss_pred hhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh-hhhhhhHHhhhhhHHHhhcch
Q psy14676 399 DEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR-DLIGDMYRLVSPPLIARFKER 477 (1827)
Q Consensus 399 ~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~-~~f~~~~~~l~~~L~~~~~d~ 477 (1827)
++ |.. -+...-+|+|..+...| +.+... +|.=+ ..+.
T Consensus 402 ---------~~-----------------------d~~----~~~~ld~~IGSAV~AmGPe~vL~~----lpLnl--~~~s 439 (1176)
T KOG1248|consen 402 ---------SP-----------------------DFF----HKLQLDQCIGSAVRAMGPERVLTI----LPLNL--HAES 439 (1176)
T ss_pred ---------CC-----------------------CCc----cHHHHHHHHHHHHHhhCHHHHHHH----cchhc--cccc
Confidence 00 111 22244578888888888 444422 22211 3333
Q ss_pred hhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCC
Q psy14676 478 EENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSS 557 (1827)
Q Consensus 478 ~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~ 557 (1827)
..-.|.+-+-.+.+-+.... + .+ ..+.++|...+++.
T Consensus 440 ~~~~RsWLLPvLR~~i~~A~----L---------------a~----------------------F~~~ivpla~sl~~-- 476 (1176)
T KOG1248|consen 440 LSFTRSWLLPVLRDYIIGAS----L---------------AF----------------------FTEYIVPLAMSLQL-- 476 (1176)
T ss_pred cccchhHhHHHHHHhhccCc----H---------------HH----------------------HHHHHHHHHHHHHH--
Confidence 34444444444333332211 0 00 11122222211100
Q ss_pred CccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccch
Q psy14676 558 DKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDG 637 (1827)
Q Consensus 558 dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~ 637 (1827)
-.++ +.+...-+. .--++..+|-.-++..+..|+ |+..=++.+
T Consensus 477 --------------K~~~--------------------l~~~~~~~~-~~~tl~~QLW~LLP~FC~~P~--Dl~~sF~~l 519 (1176)
T KOG1248|consen 477 --------------KAKK--------------------LKEAGSQVS-LYDTLVDQLWSLLPGFCNYPV--DLAESFTDL 519 (1176)
T ss_pred --------------HHHh--------------------hhhccCcHH-HHHHHHHHHHHhChhhhCCCc--cHHHHHHHH
Confidence 0000 000000000 000111233344444454444 555556667
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhh
Q psy14676 638 IPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPA 717 (1827)
Q Consensus 638 i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~ 717 (1827)
-|++...+.+.. .+|..-|..+..++..-..+-.+..-..+ ..+.
T Consensus 520 a~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~----------------------------------~s~~ 564 (1176)
T KOG1248|consen 520 APILGAALLKRP-ELRETICNSLRMLVEQNKPSSDAAENKEV----------------------------------LSND 564 (1176)
T ss_pred HHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCcchHHHHHHH----------------------------------Hhhh
Confidence 788888888877 88999888888886532110000000000 0012
Q ss_pred hhhhhHHHhhhhcccccch-hhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhh
Q psy14676 718 AASILPQVLQIAKSPLLQG-AALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQ 796 (1827)
Q Consensus 718 ~~~llp~ll~l~~s~~~~~-~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~ 796 (1827)
....+|.+.++-.++..++ ..+......+... +.+.-...+.++...|.+ ..|.+....+
T Consensus 565 AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i-~~~~~~~t~~dv~~~l~~------------------s~~e~as~~~ 625 (1176)
T KOG1248|consen 565 AKNFLPRLFNVYTQTVAAGRKILASRSTVLEII-RVDYFTVTPTDVVGSLKD------------------SAGELASDLD 625 (1176)
T ss_pred hhHHHHHHHHHhcCCCccccccHHHHHHHHHHH-HHHHhhcccHHHHHHHHH------------------HHHhHhccch
Confidence 2346777777644333333 3332222211110 000001111222222211 1111110111
Q ss_pred hhhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcCCCChhhHHHH
Q psy14676 797 REALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTY 876 (1827)
Q Consensus 797 ~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~~ 876 (1827)
.. +++..+-.-+.=+.-++++..++.+..+. .+.....++.++.+++-.
T Consensus 626 ~s------------------------------~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~~~~~vQkK~ 674 (1176)
T KOG1248|consen 626 ES------------------------------VASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENSSSTKVQKKA 674 (1176)
T ss_pred hh------------------------------hhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhccccHHHHHHH
Confidence 00 00001111111122334455566666665 333344555577889888
Q ss_pred HHHHHHHHHh--ccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHH
Q psy14676 877 IQCFAAICRQ--AGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQV 954 (1827)
Q Consensus 877 l~~l~~L~~~--~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~ 954 (1827)
...++.+... .......++..|...+++.+++.....+-.++.++..++..++.+..-+++
T Consensus 675 yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~----------------- 737 (1176)
T KOG1248|consen 675 YRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP----------------- 737 (1176)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH-----------------
Confidence 8999998887 334456688888888888888877777777777777766655543333333
Q ss_pred HHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhccc----
Q psy14676 955 ILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLI---- 1030 (1827)
Q Consensus 955 l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~---- 1030 (1827)
.+++.++-..++.+...|+.+++||-.++.+
T Consensus 738 ---------------------------------------------k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~ 772 (1176)
T KOG1248|consen 738 ---------------------------------------------KLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSL 772 (1176)
T ss_pred ---------------------------------------------HHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhh
Confidence 2222222222444455566666665444411
Q ss_pred ----CC-----CCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhh
Q psy14676 1031 ----DP-----SNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKI 1101 (1827)
Q Consensus 1031 ----~~-----~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V 1101 (1827)
.+ +.+++.|...+-+.....+...+.++..+....++.+.. +++..++..+...+....+.|
T Consensus 773 d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~---------~~l~~li~~V~~~L~s~sreI 843 (1176)
T KOG1248|consen 773 DDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDD---------ETLEKLISMVCLYLASNSREI 843 (1176)
T ss_pred cccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccH---------HHHHHHHHHHHHHHhcCCHHH
Confidence 11 124444555544444444444456666665555554443 248899999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhh-hhhhhhhhhHHH
Q psy14676 1102 TAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGD-YLKSELPVCLPI 1180 (1827)
Q Consensus 1102 ~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~-~l~~~l~~lL~~ 1180 (1827)
+..|.+.+..++..+. ...+.++++.|++.++.-.. |..-++|-..-.-+..++..+|. .+..++|...-.
T Consensus 844 ~kaAI~fikvlv~~~p------e~~l~~~~~~LL~sll~ls~--d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~k 915 (1176)
T KOG1248|consen 844 AKAAIGFIKVLVYKFP------EECLSPHLEELLPSLLALSH--DHKIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMK 915 (1176)
T ss_pred HHHHHHHHHHHHHcCC------HHHHhhhHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHH
Confidence 9999999998887642 13467899999999988554 76788999999999999999886 455555543333
Q ss_pred HHHh
Q psy14676 1181 LLDR 1184 (1827)
Q Consensus 1181 Ll~~ 1184 (1827)
++..
T Consensus 916 lL~n 919 (1176)
T KOG1248|consen 916 LLTN 919 (1176)
T ss_pred HHHH
Confidence 3333
|
|
| >KOG0212|consensus | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-10 Score=138.49 Aligned_cols=362 Identities=17% Similarity=0.222 Sum_probs=267.6
Q ss_pred HHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCC
Q psy14676 851 QLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPK 930 (1827)
Q Consensus 851 ~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~ 930 (1827)
+..++++..+......++.+..|+|.+-.+++.+-+.|.+-.+|+..++|.++.+++|.+..+|-.|++++--.+..+..
T Consensus 38 ~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~ 117 (675)
T KOG0212|consen 38 DQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKG 117 (675)
T ss_pred HHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhcc
Confidence 45566677777777777888889999999999999999999999999999999999999999999988888877788888
Q ss_pred ccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhh
Q psy14676 931 EITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCE 1010 (1827)
Q Consensus 931 ~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~ 1010 (1827)
++.+|.++|.+ .+.+.+.+.+..+|.. .+.++.+++.+.
T Consensus 118 ~v~~~Fn~iFd------------vL~klsaDsd~~V~~~-------------------------aeLLdRLikdIV---- 156 (675)
T KOG0212|consen 118 EVLVYFNEIFD------------VLCKLSADSDQNVRGG-------------------------AELLDRLIKDIV---- 156 (675)
T ss_pred CcccchHHHHH------------HHHHHhcCCccccccH-------------------------HHHHHHHHHHhc----
Confidence 88888765543 3333343333333321 111222222111
Q ss_pred ccccchhhHHHHHHhhhcccCCCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHH
Q psy14676 1011 CQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPV 1090 (1827)
Q Consensus 1011 ~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l 1090 (1827)
-++.. ....+.++|.+.+.+...++.+|+..+.-+..+.+..+-.+-.| ++.+.+.+
T Consensus 157 te~~~-------------tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~y----------l~~~ldGL 213 (675)
T KOG0212|consen 157 TESAS-------------TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISY----------LPSLLDGL 213 (675)
T ss_pred ccccc-------------ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhc----------chHHHHHH
Confidence 11110 12236689999999988899999999999998888777666666 99999999
Q ss_pred HHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhh
Q psy14676 1091 IASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYL 1170 (1827)
Q Consensus 1091 ~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l 1170 (1827)
++-++|+.+.||.-+=.+++++.+.++. ++.+-+ ..++.+.+...+. ..+++++..|+.=+.+++...|..+
T Consensus 214 f~~LsD~s~eVr~~~~t~l~~fL~eI~s--~P~s~d----~~~~i~vlv~~l~--ss~~~iq~~al~Wi~efV~i~g~~~ 285 (675)
T KOG0212|consen 214 FNMLSDSSDEVRTLTDTLLSEFLAEIRS--SPSSMD----YDDMINVLVPHLQ--SSEPEIQLKALTWIQEFVKIPGRDL 285 (675)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHhc--CccccC----cccchhhcccccc--CCcHHHHHHHHHHHHHHhcCCCcch
Confidence 9999999999998887888999988873 111112 2344555666665 7789999999999999999999988
Q ss_pred hhhhhhhHHHHHHhhhhhhh---HHHHHHHH---HHHhcCC-Cc--cccchhhhhhHhhhhhhhcchhHHHHHHHHHHHH
Q psy14676 1171 KSELPVCLPILLDRLRNEIT---RLTTVKAL---TKIAASP-LR--IDLRPILTDGIPILGSFLRKNQRALKLSTLLLLD 1241 (1827)
Q Consensus 1171 ~~~l~~lL~~Ll~~L~~e~t---R~~av~al---~~ia~~~-~~--~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~ 1241 (1827)
-++++.++..++.-+.+..+ +..+.-.- -.+..+. .. +|+ ..++..+..++.++..+.|.+++.=+.
T Consensus 286 l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~----~~ii~vl~~~l~~~~~~tri~~L~Wi~ 361 (675)
T KOG0212|consen 286 LLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDY----GSIIEVLTKYLSDDREETRIAVLNWII 361 (675)
T ss_pred hhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccch----HHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 89999999999888865543 22222221 1222111 11 233 356678888998888999999999999
Q ss_pred HHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhC
Q psy14676 1242 TLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQ 1289 (1827)
Q Consensus 1242 ~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~ 1289 (1827)
.+..+.+.++-. ..+.+.+.|..-++|.+-.+.-.++..++.+|...
T Consensus 362 ~l~~~~p~ql~~-h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 362 LLYHKAPGQLLV-HNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSS 408 (675)
T ss_pred HHHhhCcchhhh-hccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCc
Confidence 999998887543 24567788888999999899999999999999743
|
|
| >KOG1991|consensus | Back alignment and domain information |
|---|
Probab=99.25 E-value=8e-06 Score=104.89 Aligned_cols=372 Identities=17% Similarity=0.204 Sum_probs=192.1
Q ss_pred hhHHHHHHHHHHH--hhhcHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHh---ccccchhhhhhhHHHHHHhhc
Q psy14676 833 NLQLTIVALSHLV--MSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQ---AGHRFAEHIERVMPLILKYSR 907 (1827)
Q Consensus 833 ~r~~Ai~aL~~l~--~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~---~~~~~~~yl~~ilP~ll~~l~ 907 (1827)
+|.||.-.++.+. .+..++.+.+...-....+.+++.-+||-.+.-++..+-+. ..+++.+|++.+|.-+++-.+
T Consensus 478 Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~n 557 (1010)
T KOG1991|consen 478 LRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSN 557 (1010)
T ss_pred HHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHH
Confidence 4444554454443 24444455555555555555555556665544444444444 447799999999999999988
Q ss_pred cc-chHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCC---C--hHhHhhhhhcccchhhHhh
Q psy14676 908 EE-DDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTP---T--SEEVKSAASYTLGSIAEII 981 (1827)
Q Consensus 908 d~-~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~---~--~e~~r~~~~~~lg~~~~~i 981 (1827)
+- ++.+ -..++.+|+.++.++.||-.++..+. ...-.+.+.+ . +++.|..+. .|-
T Consensus 558 e~End~L----t~vme~iV~~fseElsPfA~eL~q~L--------a~~F~k~l~~~~~~~~~~ddk~iaA--~Gi----- 618 (1010)
T KOG1991|consen 558 EVENDDL----TNVMEKIVCKFSEELSPFAVELCQNL--------AETFLKVLQTSEDEDESDDDKAIAA--SGI----- 618 (1010)
T ss_pred hcchhHH----HHHHHHHHHHHHHhhchhHHHHHHHH--------HHHHHHHHhccCCCCccchHHHHHH--HHH-----
Confidence 73 3444 24578999999999999987665422 1111111111 1 111111100 000
Q ss_pred hhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHhccCChhhHHHHHHHHHHH
Q psy14676 982 SWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFN 1061 (1827)
Q Consensus 982 ~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~~~~R~~a~~~L~~l 1061 (1827)
++++..++ ..+++..+-.++ .-..++|.+...++..-...=++++.+...+
T Consensus 619 ---------L~Ti~Til--------~s~e~~p~vl~~------------le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~ 669 (1010)
T KOG1991|consen 619 ---------LRTISTIL--------LSLENHPEVLKQ------------LEPIVLPVIGFILKNDITDFYEELLEIVSSL 669 (1010)
T ss_pred ---------HHHHHHHH--------HHHhccHHHHHH------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 11111111 000000000000 0134567777777766665566666555533
Q ss_pred HHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHH
Q psy14676 1062 VIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVR 1141 (1827)
Q Consensus 1062 ~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~ 1141 (1827)
.... ..+.|- +=.|.+.+..+..|+--.--.+..-.+..++..-++ .-..-.-|+..++..+-..
T Consensus 670 t~~~-~~Isp~----------mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~----~~~s~~~y~~il~~i~~~~ 734 (1010)
T KOG1991|consen 670 TFLS-KEISPI----------MWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTP----SLLSNPDYLQILLEIIKKV 734 (1010)
T ss_pred hhhh-cccCHH----------HHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCch----hhhccchHHHHHHHHHHHH
Confidence 2222 223443 667778888887776544444555555555543221 1111223666677666666
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh----HHHHHHHHHH-HhcCCCcccc-----c
Q psy14676 1142 LKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT----RLTTVKALTK-IAASPLRIDL-----R 1211 (1827)
Q Consensus 1142 L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t----R~~av~al~~-ia~~~~~~dl-----~ 1211 (1827)
+.+.+....=.+.|..-++.++-+.++.+..++|..+...+.|++.+.+ |..+++.+-. +--.|. .-+ .
T Consensus 735 l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~-ltL~iLe~~ 813 (1010)
T KOG1991|consen 735 LTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSRLTREVETSELRVMLLEVVINALYYNPK-LTLGILENQ 813 (1010)
T ss_pred HcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCcH-HHHHHHHHc
Confidence 6544444455677999999999999887777888888888888876322 6555553221 111110 000 0
Q ss_pred hhhhhhHhhhhhhhcchh-HHHHHHHHHHHHHHHHh-CCCCcChHhHHHHHHHhhhhcC
Q psy14676 1212 PILTDGIPILGSFLRKNQ-RALKLSTLLLLDTLLVN-YPSAISTEMLNKVTVELAPLVS 1268 (1827)
Q Consensus 1212 p~~~~~l~~L~~~Lrk~~-r~lR~~al~aL~~L~~~-~~~~l~~~~~~~ll~~L~~ll~ 1268 (1827)
.|.+..-+....++.+.- -.=|+.++-+|.+++.- ...++..+.+..+.+.+..++.
T Consensus 814 ~~~~~ff~~wf~~~~~~~~~HDkKlcvL~l~tli~l~~~~~~~~e~l~~l~~~lv~L~~ 872 (1010)
T KOG1991|consen 814 GFLNNFFTLWFQFINQFKKVHDKKLCVLGLLTLISLGQDPQLPSEVLGQLGPALVELLL 872 (1010)
T ss_pred CCcccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Confidence 011111121112221111 22356677777777775 3334544445566665554443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.8e-09 Score=127.53 Aligned_cols=238 Identities=13% Similarity=0.073 Sum_probs=173.7
Q ss_pred chHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHH
Q psy14676 1035 LLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVK 1114 (1827)
Q Consensus 1035 llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~ 1114 (1827)
-++.|.+.|.+.+..+|..++..|+.+.. +...+.+...+.|+++.+|..|.++++++-.
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------------------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG--------------------QDVFRLAIELCSSKNPIERDIGADILSQLGM 83 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc--------------------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 35667777888888999999988875532 1466777788899999999999999999652
Q ss_pred HhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh--HH
Q psy14676 1115 VIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT--RL 1192 (1827)
Q Consensus 1115 ~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t--R~ 1192 (1827)
. .. + ....++.+...+ .+|.+..||..|+.++|.+-... ....+.+++.+...+.++++ |.
T Consensus 84 ~---------~~--~-~~~a~~~L~~l~-~~D~d~~VR~~A~~aLG~~~~~~----~~~~~~a~~~l~~~~~D~~~~VR~ 146 (280)
T PRK09687 84 A---------KR--C-QDNVFNILNNLA-LEDKSACVRASAINATGHRCKKN----PLYSPKIVEQSQITAFDKSTNVRF 146 (280)
T ss_pred C---------cc--c-hHHHHHHHHHHH-hcCCCHHHHHHHHHHHhcccccc----cccchHHHHHHHHHhhCCCHHHHH
Confidence 1 00 0 223344443332 25889999999999999963211 12245566666666665554 99
Q ss_pred HHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCCh
Q psy14676 1193 TTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDL 1272 (1827)
Q Consensus 1193 ~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~ 1272 (1827)
.++.+||.+.. ++.++.|...+.++++.+|..++.+|+.+ .+. ++ .+++.|...+.|.|.
T Consensus 147 ~a~~aLg~~~~-----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~--~~~---~~----~~~~~L~~~L~D~~~ 206 (280)
T PRK09687 147 AVAFALSVIND-----------EAAIPLLINLLKDPNGDVRNWAAFALNSN--KYD---NP----DIREAFVAMLQDKNE 206 (280)
T ss_pred HHHHHHhccCC-----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcC--CCC---CH----HHHHHHHHHhcCCCh
Confidence 99999987642 46788999999999999999999999976 111 12 356667788899999
Q ss_pred hHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhH
Q psy14676 1273 HIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYV 1352 (1827)
Q Consensus 1273 ~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~L 1352 (1827)
+||..++..|+.+ | .+..+|.+++.+.++. +|..|+.+||++|.. ..+
T Consensus 207 ~VR~~A~~aLg~~--------------------~-------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~---~a~ 254 (280)
T PRK09687 207 EIRIEAIIGLALR--------------------K-------DKRVLSVLIKELKKGT--VGDLIIEAAGELGDK---TLL 254 (280)
T ss_pred HHHHHHHHHHHcc--------------------C-------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH---hHH
Confidence 9999887766531 1 1468888999998865 888999999999974 678
Q ss_pred HHHHHhhhc
Q psy14676 1353 PFVLKEIEN 1361 (1827)
Q Consensus 1353 P~Il~~i~~ 1361 (1827)
|.+.+.++.
T Consensus 255 p~L~~l~~~ 263 (280)
T PRK09687 255 PVLDTLLYK 263 (280)
T ss_pred HHHHHHHhh
Confidence 888887753
|
|
| >KOG0212|consensus | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.7e-08 Score=115.98 Aligned_cols=393 Identities=17% Similarity=0.150 Sum_probs=273.6
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHhhchh----HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHH
Q psy14676 84 LLPQLSSPRQAVRKRTIVALSHLVMSCNLQ----LYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIER 159 (1827)
Q Consensus 84 ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~----~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~ 159 (1827)
+...|+|---.-||.|+.-+..++..+-.+ .+.++++.+........+...|+..+-.+++++-..|..-.+|+..
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 345566666788999999999998876543 2444555555555444445567788888888888888888889999
Q ss_pred HHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccC
Q psy14676 160 VMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEED 239 (1827)
Q Consensus 160 i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d 239 (1827)
++|-++..+++.+..+|=+|.+++-..++.|..++-+|.+.+...+-+..... + .
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDs-d-------~----------------- 139 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADS-D-------Q----------------- 139 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCC-c-------c-----------------
Confidence 99999999999999999888777777788888899999999998888765320 0 0
Q ss_pred CCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcC--CchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhc
Q psy14676 240 GEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR--DLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTR 317 (1827)
Q Consensus 240 ~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~--~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~ 317 (1827)
.|| .+++.++++++.-. ..-.--++.++|.|..|+..-++..|...+.-+..+-..
T Consensus 140 -------------------~V~-~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-- 197 (675)
T KOG0212|consen 140 -------------------NVR-GGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-- 197 (675)
T ss_pred -------------------ccc-cHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC--
Confidence 111 36677777776432 110124778899999999888999999887666544311
Q ss_pred ccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccC-chhhHHHHHHHHh
Q psy14676 318 TFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAP-SLPALIPDVTSVA 396 (1827)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~-~l~~Llp~i~~~L 396 (1827)
+.-.+-.++|.+++.+.+.|.|++++||.-|-.++++....+...-+. ..+..++.+..-+
T Consensus 198 ------------------P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l 259 (675)
T KOG0212|consen 198 ------------------PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHL 259 (675)
T ss_pred ------------------CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccc
Confidence 113466799999999999999999999998887777666554321110 1122222221111
Q ss_pred hhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcc
Q psy14676 397 EWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKE 476 (1827)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d 476 (1827)
.+ ...-++..|+.-+..|++..|..+.+|+..++..+++++.|
T Consensus 260 ----------------~s---------------------s~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~ 302 (675)
T KOG0212|consen 260 ----------------QS---------------------SEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSD 302 (675)
T ss_pred ----------------cC---------------------CcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCC
Confidence 11 11237888999999999999999999999999999999999
Q ss_pred hhh-hhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhc
Q psy14676 477 REE-NVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMT 555 (1827)
Q Consensus 477 ~~~-~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~ 555 (1827)
..+ +++..+..+=+.+++-++......++ -.-+++..+.+++.++.+.++-.++.-+.-..+
T Consensus 303 ~e~~~i~~~a~~~n~~l~~l~s~~~~~~~i-----------------d~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~ 365 (675)
T KOG0212|consen 303 TEEMSIKEYAQMVNGLLLKLVSSERLKEEI-----------------DYGSIIEVLTKYLSDDREETRIAVLNWIILLYH 365 (675)
T ss_pred CccccHHHHHHHHHHHHHHHHhhhhhcccc-----------------chHHHHHHHHHHhhcchHHHHHHHHHHHHHHHh
Confidence 988 68888887777777665521111000 013567777777777777777777666644332
Q ss_pred CCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHH
Q psy14676 556 SSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLF 615 (1827)
Q Consensus 556 d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~ 615 (1827)
.. | ..+. .-...+++.++..+.|++.+|-..+...+..++
T Consensus 366 ~~-p-------~ql~------------~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~ 405 (675)
T KOG0212|consen 366 KA-P-------GQLL------------VHNDSIFLTLLKTLSDRSDEVVLLALSLLASIC 405 (675)
T ss_pred hC-c-------chhh------------hhccHHHHHHHHhhcCchhHHHHHHHHHHHHHh
Confidence 21 0 0111 124578899999999999999988877666554
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.4e-09 Score=146.84 Aligned_cols=273 Identities=16% Similarity=0.127 Sum_probs=190.9
Q ss_pred hHHHHHHhhhhhh--hHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChH
Q psy14676 1177 CLPILLDRLRNEI--TRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTE 1254 (1827)
Q Consensus 1177 lL~~Ll~~L~~e~--tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~ 1254 (1827)
.++.|++.|++++ .|..|+++|+.+.. .+.++.|...|++++..+|..++.+|..+....+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~----- 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP----- 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-----
Confidence 4556777777665 49999999998752 44678888889999999999999999887543221
Q ss_pred hHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHH
Q psy14676 1255 MLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKS 1334 (1827)
Q Consensus 1255 ~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~ 1334 (1827)
.+.|...+.++|..+|..++..|+.+-. . -...++..+.|+++.||.
T Consensus 686 -----~~~L~~~L~~~d~~VR~~A~~aL~~~~~---------------------------~-~~~~l~~~L~D~d~~VR~ 732 (897)
T PRK13800 686 -----APALRDHLGSPDPVVRAAALDVLRALRA---------------------------G-DAALFAAALGDPDHRVRI 732 (897)
T ss_pred -----hHHHHHHhcCCCHHHHHHHHHHHHhhcc---------------------------C-CHHHHHHHhcCCCHHHHH
Confidence 1234556778999999998887765321 0 123577889999999999
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHhhhc-CchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHH
Q psy14676 1335 AASYTLGSIAVGNLQQYVPFVLKEIEN-QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTR 1413 (1827)
Q Consensus 1335 aAa~aLG~i~~~~l~~~LP~Il~~i~~-~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR 1413 (1827)
+|+.+||.++.. +.++..+.+ ++..|.....+|+.+-. .. ....+.|...+.+++..+|
T Consensus 733 ~Av~aL~~~~~~------~~l~~~l~D~~~~VR~~aa~aL~~~~~---------~~-----~~~~~~L~~ll~D~d~~VR 792 (897)
T PRK13800 733 EAVRALVSVDDV------ESVAGAATDENREVRIAVAKGLATLGA---------GG-----APAGDAVRALTGDPDPLVR 792 (897)
T ss_pred HHHHHHhcccCc------HHHHHHhcCCCHHHHHHHHHHHHHhcc---------cc-----chhHHHHHHHhcCCCHHHH
Confidence 999999987531 234455555 34456666666665521 00 1113444555556778899
Q ss_pred HHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHH
Q psy14676 1414 NVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSE 1493 (1827)
Q Consensus 1414 ~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~ 1493 (1827)
..++.+||++.. +..+.+.+...++++++.+|..++.||..+-..
T Consensus 793 ~aA~~aLg~~g~--~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~--------------------------------- 837 (897)
T PRK13800 793 AAALAALAELGC--PPDDVAAATAALRASAWQVRQGAARALAGAAAD--------------------------------- 837 (897)
T ss_pred HHHHHHHHhcCC--cchhHHHHHHHhcCCChHHHHHHHHHHHhcccc---------------------------------
Confidence 999999999853 445557788999999999999999999754311
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhhh
Q psy14676 1494 RKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLG 1568 (1827)
Q Consensus 1494 ~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~ 1568 (1827)
..++.+..+++|++..||..|+.+||.+. .+... +..|. ...++.+ .+||+.|..+|+.+
T Consensus 838 -~a~~~L~~~L~D~~~~VR~~A~~aL~~~~--~~~~a----~~~L~-~al~D~d-------~~Vr~~A~~aL~~~ 897 (897)
T PRK13800 838 -VAVPALVEALTDPHLDVRKAAVLALTRWP--GDPAA----RDALT-TALTDSD-------ADVRAYARRALAHA 897 (897)
T ss_pred -chHHHHHHHhcCCCHHHHHHHHHHHhccC--CCHHH----HHHHH-HHHhCCC-------HHHHHHHHHHHhhC
Confidence 23488899999999999999999999972 12222 22222 2223333 39999999999753
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.8e-09 Score=146.14 Aligned_cols=272 Identities=13% Similarity=0.099 Sum_probs=193.2
Q ss_pred hhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q psy14676 1086 LLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICN 1165 (1827)
Q Consensus 1086 Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~ 1165 (1827)
-++.++..+.|+++.||..|+..++.+.. ...++.+...|. |.+..||..|+.+|+.+...
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------------~~~~~~L~~aL~--D~d~~VR~~Aa~aL~~l~~~ 682 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-----------------PGFGPALVAALG--DGAAAVRRAAAEGLRELVEV 682 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------------hhHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhc
Confidence 45667778899999999999888877541 123444555554 88999999999999887543
Q ss_pred hhhhhhhhhhhhHHHHHHhhh--hhhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHH
Q psy14676 1166 LGDYLKSELPVCLPILLDRLR--NEITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTL 1243 (1827)
Q Consensus 1166 ~g~~l~~~l~~lL~~Ll~~L~--~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L 1243 (1827)
... .+.+...|+ +...|..|+++|+.+.... ...|...|++.+..+|.+++.+|..+
T Consensus 683 ~~~---------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 683 LPP---------APALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAALGDPDHRVRIEAVRALVSV 741 (897)
T ss_pred cCc---------hHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 221 123444444 3445999999999865210 23456688999999999999999864
Q ss_pred HHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHH
Q psy14676 1244 LVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILN 1323 (1827)
Q Consensus 1244 ~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~ 1323 (1827)
+ . .+.|..++.|.|..||..+...|+.+.... +...+.+..
T Consensus 742 ----~----~------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~-------------------------~~~~~~L~~ 782 (897)
T PRK13800 742 ----D----D------VESVAGAATDENREVRIAVAKGLATLGAGG-------------------------APAGDAVRA 782 (897)
T ss_pred ----c----C------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc-------------------------chhHHHHHH
Confidence 1 1 123456789999999999888776543210 223567888
Q ss_pred hcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhc-CchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHh
Q psy14676 1324 AFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIEN-QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLF 1402 (1827)
Q Consensus 1324 ~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~-~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~ 1402 (1827)
.+.|+++.||.+|+.+||.++... ...+.+...+.+ ++..|.....+|+++- . +..++.|.
T Consensus 783 ll~D~d~~VR~aA~~aLg~~g~~~--~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~---------~-------~~a~~~L~ 844 (897)
T PRK13800 783 LTGDPDPLVRAAALAALAELGCPP--DDVAAATAALRASAWQVRQGAARALAGAA---------A-------DVAVPALV 844 (897)
T ss_pred HhcCCCHHHHHHHHHHHHhcCCcc--hhHHHHHHHhcCCChHHHHHHHHHHHhcc---------c-------cchHHHHH
Confidence 899999999999999999997642 233446666655 3445555556665431 1 22346666
Q ss_pred hhhcCCchhHHHHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHHHHHH
Q psy14676 1403 LHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKF 1456 (1827)
Q Consensus 1403 ~~~~~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~ 1456 (1827)
..+.+++..||..++.+||++ -.+....+.|...++++++.+|..+..||..
T Consensus 845 ~~L~D~~~~VR~~A~~aL~~~--~~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 845 EALTDPHLDVRKAAVLALTRW--PGDPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 666788899999999999996 2345677999999999999999999998864
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-07 Score=125.05 Aligned_cols=454 Identities=18% Similarity=0.156 Sum_probs=296.6
Q ss_pred hccccchhhHHHHHHhhhcccCCCC---chHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhh
Q psy14676 1010 ECQEEGTRNVVAECLGKLTLIDPSN---LLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFL 1086 (1827)
Q Consensus 1010 ~~~e~~vR~~a~e~Lg~L~~~~~~~---llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~L 1086 (1827)
.+.+...+.++--.+..+....++. ++..+.+-+.++++..|..|+.+++.+.... ..+.+
T Consensus 52 ~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~----------------~~~~l 115 (526)
T PF01602_consen 52 SSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPE----------------MAEPL 115 (526)
T ss_dssp SSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHH----------------HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccc----------------hhhHH
Confidence 3444444444444444444433331 4667778889999999999999999765332 27789
Q ss_pred hHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh
Q psy14676 1087 LSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNL 1166 (1827)
Q Consensus 1087 ip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~ 1166 (1827)
+|.+.+++.|+.+-||..|+.++..+.+.- | +.+... +++.+...+. |.++.|+.+|+.++..+ ..-
T Consensus 116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~-p------~~~~~~---~~~~l~~lL~--d~~~~V~~~a~~~l~~i-~~~ 182 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRKKAALALLKIYRKD-P------DLVEDE---LIPKLKQLLS--DKDPSVVSAALSLLSEI-KCN 182 (526)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-H------CCHHGG---HHHHHHHHTT--HSSHHHHHHHHHHHHHH-HCT
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccC-H------HHHHHH---HHHHHhhhcc--CCcchhHHHHHHHHHHH-ccC
Confidence 999999999999999999999999988752 1 122221 3455555554 78899999999999998 222
Q ss_pred hhhhhhhhhhhHHHHHHhhh-hhhh-HHHHHHHHHHHhcCCCccccchhh--hhhHhhhhhhhcchhHHHHHHHHHHHHH
Q psy14676 1167 GDYLKSELPVCLPILLDRLR-NEIT-RLTTVKALTKIAASPLRIDLRPIL--TDGIPILGSFLRKNQRALKLSTLLLLDT 1242 (1827)
Q Consensus 1167 g~~l~~~l~~lL~~Ll~~L~-~e~t-R~~av~al~~ia~~~~~~dl~p~~--~~~l~~L~~~Lrk~~r~lR~~al~aL~~ 1242 (1827)
.+.....++.+...|.+.+. ...| +...++.++.++.... ... ..+++.+..+++..+..+...+..++-.
T Consensus 183 ~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~-----~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~ 257 (526)
T PF01602_consen 183 DDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP-----EDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIK 257 (526)
T ss_dssp HHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh-----hhhhHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 22212334444444444432 2233 7777777776654321 111 3567778888887778777777766654
Q ss_pred HHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHH
Q psy14676 1243 LLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVIL 1322 (1827)
Q Consensus 1243 L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l 1322 (1827)
+.. .+.....+++.|..+++++|..++-.++..|..++...+.. .......+.
T Consensus 258 l~~------~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~---------------------v~~~~~~~~ 310 (526)
T PF01602_consen 258 LSP------SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPA---------------------VFNQSLILF 310 (526)
T ss_dssp HSS------SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHH---------------------HGTHHHHHH
T ss_pred hhc------chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchh---------------------hhhhhhhhh
Confidence 322 12367788999999999999999999999998887754211 011222233
Q ss_pred HhcCCCCHhHHHHHHHHHhhhh-hhhhhhhHHHHHHhhhc--CchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHH
Q psy14676 1323 NAFTPTSEEVKSAASYTLGSIA-VGNLQQYVPFVLKEIEN--QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWA 1399 (1827)
Q Consensus 1323 ~~~~~~s~eVr~aAa~aLG~i~-~~~l~~~LP~Il~~i~~--~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~ 1399 (1827)
....+++..+|..|...|..++ ..|...+++.+.+.+.+ ++..+-.+..+++.+.... .+...|..+
T Consensus 311 ~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~----------~~~~~~~v~ 380 (526)
T PF01602_consen 311 FLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKF----------PPDAEWYVD 380 (526)
T ss_dssp HHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH----------GSSHHHHHH
T ss_pred eecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhcc----------CchHHHHHH
Confidence 3334888999999999988865 46888899999998843 3335556667777765532 234466666
Q ss_pred HHhhhhcCCchhHHHHHHHHHHHhhccCCC---cchHHHHHhhhc-CCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhh
Q psy14676 1400 QLFLHCECQEEGTRNVVAECLGKLTLIDPS---NLLPRLQESLKS-NSALMRTTVLTAVKFTISDQMTSSDKDFRFMATN 1475 (1827)
Q Consensus 1400 ~L~~~~~~~~e~vR~~aAecLGkL~~~~p~---~~lP~L~~~l~~-~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~ 1475 (1827)
.+++.+....+.++.-+..++-++...+|+ ..+..|.+.+.+ .++..+.+++-.+.......+.
T Consensus 381 ~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~------------ 448 (526)
T PF01602_consen 381 TLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGELIEN------------ 448 (526)
T ss_dssp HHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT------------
T ss_pred HHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc------------
Confidence 666666656667788888888888877776 367777777765 4666666666666665433221
Q ss_pred hhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHH-HHHHHHHhhhcccccccccCCc
Q psy14676 1476 DLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVE-TIVDALCSNMVSDKEQLRDISS 1554 (1827)
Q Consensus 1476 ~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~-~~v~~l~~~l~~~~~~~~~~~~ 1554 (1827)
.. ....++..+.....+..+.||.....++.++..+.+..... .+++.+......+ ..|
T Consensus 449 -------------~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~------s~~ 508 (526)
T PF01602_consen 449 -------------TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATED------SSD 508 (526)
T ss_dssp -------------TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-------SS
T ss_pred -------------cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccC------CCC
Confidence 00 12356677777778888999999999999999887765444 4444444333311 234
Q ss_pred cchhHHHHHHHh
Q psy14676 1555 IGLKTVISVVYC 1566 (1827)
Q Consensus 1555 ~~vRr~Al~~l~ 1566 (1827)
++||.-|..-++
T Consensus 509 ~evr~Ra~~y~~ 520 (526)
T PF01602_consen 509 PEVRDRAREYLR 520 (526)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599987766543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.4e-09 Score=125.24 Aligned_cols=247 Identities=13% Similarity=0.112 Sum_probs=176.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhh--hHHHHHHHHHHHhcCCCccccchhhh
Q psy14676 1138 TLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEI--TRLTTVKALTKIAASPLRIDLRPILT 1215 (1827)
Q Consensus 1138 ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~--tR~~av~al~~ia~~~~~~dl~p~~~ 1215 (1827)
++..|. |.+..||..|+.+|+.+- + +.+++.+...+++++ .|..++.+||.+..... ...
T Consensus 28 L~~~L~--d~d~~vR~~A~~aL~~~~----~------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~------~~~ 89 (280)
T PRK09687 28 LFRLLD--DHNSLKRISSIRVLQLRG----G------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR------CQD 89 (280)
T ss_pred HHHHHh--CCCHHHHHHHHHHHHhcC----c------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc------chH
Confidence 344554 889999999999998753 2 445666666566554 49999999999875311 023
Q ss_pred hhHhhhhhh-hcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccc
Q psy14676 1216 DGIPILGSF-LRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALV 1294 (1827)
Q Consensus 1216 ~~l~~L~~~-Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~ 1294 (1827)
.+++.|... +++.+..+|.+++.+|+.+...... +...++..+...+.|.|.+||..+...|+.
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~-----~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~---------- 154 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKKNPL-----YSPKIVEQSQITAFDKSTNVRFAVAFALSV---------- 154 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc-----cchHHHHHHHHHhhCCCHHHHHHHHHHHhc----------
Confidence 566777665 6777899999999999987432111 122355566778889999999987776642
Q ss_pred hhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhc-CchhhHHHHHHH
Q psy14676 1295 EPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIEN-QPKRQYLLLHSL 1373 (1827)
Q Consensus 1295 ~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~-~~~~q~~~l~aL 1373 (1827)
+| -+..++.++..+.|++.+||..|+++||.++.++ +...|.+.+.+.+ ++..+....++|
T Consensus 155 ----------~~-------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~-~~~~~~L~~~L~D~~~~VR~~A~~aL 216 (280)
T PRK09687 155 ----------IN-------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN-PDIREAFVAMLQDKNEEIRIEAIIGL 216 (280)
T ss_pred ----------cC-------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 21 1457899999999999999999999999985432 3566777777766 345666677777
Q ss_pred HHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCCcchHHHHHhhh-cCCHHHHHHHHH
Q psy14676 1374 KEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLK-SNSALMRTTVLT 1452 (1827)
Q Consensus 1374 ~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l~-~~~~~~R~t~l~ 1452 (1827)
+++-. +...+.|++.+.++. +|..++++||.+.. ...+|.|.++++ ++|..+|..++.
T Consensus 217 g~~~~----------------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~---~~a~p~L~~l~~~~~d~~v~~~a~~ 275 (280)
T PRK09687 217 ALRKD----------------KRVLSVLIKELKKGT--VGDLIIEAAGELGD---KTLLPVLDTLLYKFDDNEIITKAID 275 (280)
T ss_pred HccCC----------------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC---HhHHHHHHHHHhhCCChhHHHHHHH
Confidence 76411 233455566554433 78889999999876 468899999997 889999988888
Q ss_pred HHHH
Q psy14676 1453 AVKF 1456 (1827)
Q Consensus 1453 Alk~ 1456 (1827)
+++.
T Consensus 276 a~~~ 279 (280)
T PRK09687 276 KLKR 279 (280)
T ss_pred HHhc
Confidence 7763
|
|
| >KOG1943|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.9e-05 Score=97.22 Aligned_cols=135 Identities=21% Similarity=0.304 Sum_probs=104.1
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhH
Q psy14676 78 FVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHI 157 (1827)
Q Consensus 78 ~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l 157 (1827)
..++..+++.|+|.+..||=.|+..++.+...++.++..+.+...+..+.-.++...=-.+|-+++.+|+.- --+..-+
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLlps~l 418 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLLPSLL 418 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-CcchHHH
Confidence 367778888899999999999999999999999988888888888885533233444457888888888642 1222246
Q ss_pred HHHHHHHHhhcccC--------chHHHHHHHHHHHHHHHhC-CCccccchHHHHHHHHHHhccCC
Q psy14676 158 ERVMPLILKYSREE--------DDELREFCLQACEAFVQRC-PKEITPHIQSITELCLTYITYDP 213 (1827)
Q Consensus 158 ~~i~p~l~~~~~~~--------~delRe~al~ale~~~~~~-p~e~~p~l~~ii~~ll~~l~~dp 213 (1827)
+.++|++++.+..+ ...+|+.|.+.+=+|.+.. |.++.||+..+.+.++....+||
T Consensus 419 ~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDr 483 (1133)
T KOG1943|consen 419 EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDR 483 (1133)
T ss_pred HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCc
Confidence 78999999887642 4568999998887877754 77899999999999988766654
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-06 Score=114.13 Aligned_cols=424 Identities=11% Similarity=0.092 Sum_probs=254.7
Q ss_pred HHHHhhhhccccchhhHHHHHHhhhccc-CCCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhh
Q psy14676 1003 AQLFLHCECQEEGTRNVVAECLGKLTLI-DPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYS 1081 (1827)
Q Consensus 1003 ~~L~~~l~~~e~~vR~~a~e~Lg~L~~~-~~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~ 1081 (1827)
+.+.+-+.++.+.+|-.|.++|+.+... ..+.+++.+.+++.+.++.+|.+|+.++.-++...++.+...
T Consensus 108 Ntl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~--------- 178 (746)
T PTZ00429 108 NTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQ--------- 178 (746)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccccc---------
Confidence 4444555677778888888887776443 235677888888999999999999988887777666544322
Q ss_pred hhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy14676 1082 FYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQ 1161 (1827)
Q Consensus 1082 ~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~ 1161 (1827)
.+++.+...+.|.++.|.+.|+.++.++... .+..+ ......+..++..+. +-+.=-+-..+..+
T Consensus 179 ---~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~-------~~~~l-~l~~~~~~~Ll~~L~--e~~EW~Qi~IL~lL-- 243 (746)
T PTZ00429 179 ---DFKKDLVELLNDNNPVVASNAAAIVCEVNDY-------GSEKI-ESSNEWVNRLVYHLP--ECNEWGQLYILELL-- 243 (746)
T ss_pred ---chHHHHHHHhcCCCccHHHHHHHHHHHHHHh-------Cchhh-HHHHHHHHHHHHHhh--cCChHHHHHHHHHH--
Confidence 4667777788999999999999988888642 01111 223344444455554 22211122222222
Q ss_pred HHHHhhhhhhhhhhhhHHHHHHhhh--hhhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHH
Q psy14676 1162 IICNLGDYLKSELPVCLPILLDRLR--NEITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLL 1239 (1827)
Q Consensus 1162 l~~~~g~~l~~~l~~lL~~Ll~~L~--~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~a 1239 (1827)
......-......++..+..+++ |...-++|++++-.+.......-.......+...+..++ .++.++|..++..
T Consensus 244 --~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~-ss~~eiqyvaLr~ 320 (746)
T PTZ00429 244 --AAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLS-RRDAETQYIVCKN 320 (746)
T ss_pred --HhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhh-CCCccHHHHHHHH
Confidence 22111111234567777777765 444588888887776543110000111112223344444 3567899999999
Q ss_pred HHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHH
Q psy14676 1240 LDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQ 1319 (1827)
Q Consensus 1240 L~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~ 1319 (1827)
+..++..++.-+ ..-+..+-...+|.+ .++...+++|..++.. +....++.
T Consensus 321 I~~i~~~~P~lf-----~~~~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane-----------------------~Nv~~IL~ 371 (746)
T PTZ00429 321 IHALLVIFPNLL-----RTNLDSFYVRYSDPP-FVKLEKLRLLLKLVTP-----------------------SVAPEILK 371 (746)
T ss_pred HHHHHHHCHHHH-----HHHHHhhhcccCCcH-HHHHHHHHHHHHHcCc-----------------------ccHHHHHH
Confidence 998888754322 222333334556666 4899999999887642 12345667
Q ss_pred HHHHhcCCCCHhHHHHHHHHHhhhhhh---hhhhhHHHHHHhhhcCchhhHHHHHHHHHHHhhccccccchhhhhchHHH
Q psy14676 1320 VILNAFTPTSEEVKSAASYTLGSIAVG---NLQQYVPFVLKEIENQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPA 1396 (1827)
Q Consensus 1320 ~~l~~~~~~s~eVr~aAa~aLG~i~~~---~l~~~LP~Il~~i~~~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~ 1396 (1827)
-+.+...+.+.+++..|..++|.++.. ....++..+++.+........-++..++.++.+- +.. +
T Consensus 372 EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~~v~e~i~vik~Ilrky------P~~---~--- 439 (746)
T PTZ00429 372 ELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPELLPQVVTAAKDIVRKY------PEL---L--- 439 (746)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHC------ccH---H---
Confidence 777777788899999999999998763 2446888888887654332222456677776532 111 1
Q ss_pred HHHHHhhhh---cCCchhHHHHHHHHHHHhhccCC--CcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHH
Q psy14676 1397 IWAQLFLHC---ECQEEGTRNVVAECLGKLTLIDP--SNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRF 1471 (1827)
Q Consensus 1397 i~~~L~~~~---~~~~e~vR~~aAecLGkL~~~~p--~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~ 1471 (1827)
+...|...+ .-.+...|......||..+..-+ ..++-.+.+....+++.+|...++|.-.+....+.. .
T Consensus 440 il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~----~-- 513 (746)
T PTZ00429 440 MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQG----M-- 513 (746)
T ss_pred HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHH----H--
Confidence 334444432 12345578888889999885332 233333444445678889988888766555443311 1
Q ss_pred HHhhhhhhhhhhcccccChhHHHHHHHHHH-Hhh-cCCchHHHHHHHHHhhhh
Q psy14676 1472 MATNDLMSELQKDSIKLDDDSERKVVKMLL-RLL-EDKNGEVQNLAVKCLGPL 1522 (1827)
Q Consensus 1472 ~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll-~~l-~D~~~~Vr~~a~~~Lg~L 1522 (1827)
...+..++ .+. .+.+++||..|.--..-|
T Consensus 514 ----------------------~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLL 544 (746)
T PTZ00429 514 ----------------------EPQLNRVLETVTTHSDDPDVRDRAFAYWRLL 544 (746)
T ss_pred ----------------------HHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 12334444 343 467889999987655444
|
|
| >KOG1943|consensus | Back alignment and domain information |
|---|
Probab=99.00 E-value=2e-05 Score=102.03 Aligned_cols=469 Identities=16% Similarity=0.166 Sum_probs=258.9
Q ss_pred hhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcC---CCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcc-
Q psy14676 833 NLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTT---NKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSRE- 908 (1827)
Q Consensus 833 ~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~---~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d- 908 (1827)
+|-.|..+++-+...++.++-..++..++.-+.- +...+ |.|-+++.|+.. |--+..-+.+|+|.|++++.=
T Consensus 357 VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWH---gacLaLAELA~r-GlLlps~l~dVvplI~kaL~Yd 432 (1133)
T KOG1943|consen 357 VRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWH---GACLALAELALR-GLLLPSLLEDVVPLILKALHYD 432 (1133)
T ss_pred hhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHH---HHHHHHHHHHhc-CCcchHHHHHHHHHHHHHhhhh
Confidence 5556888888888888888888888888883321 22334 788888888754 333444588999999999873
Q ss_pred -------cchHHHHHHHHHHHHHHh-hCCCccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhccc----ch
Q psy14676 909 -------EDDELREFCLQACEAFVQ-RCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTL----GS 976 (1827)
Q Consensus 909 -------~~~~vre~al~Ale~~v~-~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~l----g~ 976 (1827)
.-..||++|+..|=.|.- +-+.++.|++..+.. .++...+=+++-..|.+++-++ |.
T Consensus 433 ~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s-----------~LL~~AlFDrevncRRAAsAAlqE~VGR 501 (1133)
T KOG1943|consen 433 VRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLAS-----------ALLIVALFDREVNCRRAASAALQENVGR 501 (1133)
T ss_pred hhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHH-----------HHHHHHhcCchhhHhHHHHHHHHHHhcc
Confidence 235699999999977775 456689998764432 3344443334555555544332 21
Q ss_pred ---h---------hHhhhhcccccc--hhhhhhhhHHHHHHHHHhhh-----hccccchhhHHHHHHhhhcccCC----C
Q psy14676 977 ---I---------AEIISWQSTSTS--GVAQLQQFVPAIWAQLFLHC-----ECQEEGTRNVVAECLGKLTLIDP----S 1033 (1827)
Q Consensus 977 ---~---------~~~i~Wk~~~~~--~~~~l~~~~p~ll~~L~~~l-----~~~e~~vR~~a~e~Lg~L~~~~~----~ 1033 (1827)
. .+.++-+.++.+ .+...-..+|+..+.+|.++ -.=+..+|+.++.+|.+|....| +
T Consensus 502 ~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~ 581 (1133)
T KOG1943|consen 502 QGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLAD 581 (1133)
T ss_pred CCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcc
Confidence 1 011111101110 11122223344444444443 22346788899999999887766 4
Q ss_pred CchHHHHHHhccCChhhHHHHHHHHHHHHHhcccc--ccccccchhhhhhhhhhhhHHHHHhhcCCc--hhhHHHHHHHH
Q psy14676 1034 NLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRND--IHNHNEETSFIYSFYYFLLSPVIASVGDNF--YKITAEALLVL 1109 (1827)
Q Consensus 1034 ~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~--l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~--~~V~~eAl~~l 1109 (1827)
..+|+++...-+.+...|.+...+.+.+.-..... +-++ -.+..+..++.++|++...--++- ...+...++.+
T Consensus 582 ~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~--l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~I 659 (1133)
T KOG1943|consen 582 YVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKG--LDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFI 659 (1133)
T ss_pred cchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhh--hHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHH
Confidence 68899999998889999999988888544333211 1111 112222233344554433222211 12233333333
Q ss_pred HHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCH-HHHHHHHHHHHHHHHHhhhhhhhhhh-hhHHHHHHhhhh
Q psy14676 1110 QQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQ-EVKERAISCMGQIICNLGDYLKSELP-VCLPILLDRLRN 1187 (1827)
Q Consensus 1110 ~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~-eVre~Ai~alg~l~~~~g~~l~~~l~-~lL~~Ll~~L~~ 1187 (1827)
+.+.-. ...-+..++-.=+..++. .+++++ -+|+.|..+++++....-. ..++.. +++...+.++.+
T Consensus 660 e~~s~s-------~~~~~~~~v~e~~~~ll~---~~l~~~n~i~~~av~av~~l~s~y~~-~d~~~~~~li~~~ls~~~~ 728 (1133)
T KOG1943|consen 660 EQLSLS-------KDRLFQDFVIENWQMLLA---QNLTLPNQIRDAAVSAVSDLVSTYVK-ADEGEEAPLITRYLSRLTK 728 (1133)
T ss_pred HHhhhc-------cchhHHHHHHHHHHHHHH---HhhcchHHHHHHHHHHHHHHHHHHHh-cCchhhhHHHHHHHHHhcC
Confidence 333210 001111122221222222 223223 5899999999999876521 112222 466667777765
Q ss_pred h---hhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcc-hhHHHHHHHHHHHHHHHHhCCCCcCh----HhHHHH
Q psy14676 1188 E---ITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRK-NQRALKLSTLLLLDTLLVNYPSAIST----EMLNKV 1259 (1827)
Q Consensus 1188 e---~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk-~~r~lR~~al~aL~~L~~~~~~~l~~----~~~~~l 1259 (1827)
. ..|..-.-++|.+-.+..+.... ..+...+....-. ....-|...+.++...++..++.+.. +.++.+
T Consensus 729 ~~~~~~r~g~~lal~~lp~~~i~~~~q---~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~L 805 (1133)
T KOG1943|consen 729 CSEERIRRGLILALGVLPSELIHRHLQ---EKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETL 805 (1133)
T ss_pred chHHHHHHHHHHHHccCcHHhhchHHH---HHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 4 33666666666544322221111 2222222222211 14557889999999999877644333 345555
Q ss_pred HHHhhhhcCCCC----hhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHH
Q psy14676 1260 TVELAPLVSESD----LHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSA 1335 (1827)
Q Consensus 1260 l~~L~~ll~d~D----~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~a 1335 (1827)
+..+-....|+. .-||.+++..+..+.-..+. +...+......++.-+++..-+..+..|+-
T Consensus 806 L~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~--------------p~~ld~~~i~~~~~~~vqQ~veKIdrlre~ 871 (1133)
T KOG1943|consen 806 LNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSS--------------PKLLDEDSINRIIRYFVQQAVEKIDRLREL 871 (1133)
T ss_pred HHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcC--------------cccccHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 555555555532 56888888887766553321 122222233445555666666667778888
Q ss_pred HHHHHhhhhhh
Q psy14676 1336 ASYTLGSIAVG 1346 (1827)
Q Consensus 1336 Aa~aLG~i~~~ 1346 (1827)
|+.++..+..-
T Consensus 872 a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 872 AASALNQIVVH 882 (1133)
T ss_pred HHHHHhceeec
Confidence 88888876543
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.7e-05 Score=104.61 Aligned_cols=385 Identities=16% Similarity=0.109 Sum_probs=229.4
Q ss_pred hHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCC-----CchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccc
Q psy14676 997 FVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPS-----NLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHN 1071 (1827)
Q Consensus 997 ~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~-----~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~ 1071 (1827)
+++.++..+.+.+.+.+..||+.|+-|+.++....|+ .+++.+.+.+.+.++.+...|+.+|..+....+..+..
T Consensus 137 i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l 216 (746)
T PTZ00429 137 VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIES 216 (746)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHH
Confidence 3455556666667899999999999999999887663 46789999999999999999999999776655443211
Q ss_pred cccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHH
Q psy14676 1072 HNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEV 1151 (1827)
Q Consensus 1072 ~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eV 1151 (1827)
....+..++..+.+-+.--....++.+ . ...|. -......++..+..++. ..+..|
T Consensus 217 -----------~~~~~~~Ll~~L~e~~EW~Qi~IL~lL---~-~y~P~-------~~~e~~~il~~l~~~Lq--~~N~AV 272 (746)
T PTZ00429 217 -----------SNEWVNRLVYHLPECNEWGQLYILELL---A-AQRPS-------DKESAETLLTRVLPRMS--HQNPAV 272 (746)
T ss_pred -----------HHHHHHHHHHHhhcCChHHHHHHHHHH---H-hcCCC-------CcHHHHHHHHHHHHHhc--CCCHHH
Confidence 233444455555432222222233332 2 23331 12345678888888887 456778
Q ss_pred HHHHHHHHHHHHHHhhhhh-hhhhhhhHHHHHHhhh-hhhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchh
Q psy14676 1152 KERAISCMGQIICNLGDYL-KSELPVCLPILLDRLR-NEITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQ 1229 (1827)
Q Consensus 1152 re~Ai~alg~l~~~~g~~l-~~~l~~lL~~Ll~~L~-~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~ 1229 (1827)
.-.|+.++-.+.......+ ......+-+.++..+. +...|..+++.+..++.... ..+..-+..+.-...+..
T Consensus 273 Vl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P-----~lf~~~~~~Ff~~~~Dp~ 347 (746)
T PTZ00429 273 VMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFP-----NLLRTNLDSFYVRYSDPP 347 (746)
T ss_pred HHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCH-----HHHHHHHHhhhcccCCcH
Confidence 6666666655543321111 1122222233333332 23469999999988876421 112111222222223333
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhccccc
Q psy14676 1230 RALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHT 1309 (1827)
Q Consensus 1230 r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~ 1309 (1827)
.+|...++.|..++.. +-+..++.+|....++.|.+++.-++..++.++...|..
T Consensus 348 -yIK~~KLeIL~~Lane-------~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~----------------- 402 (746)
T PTZ00429 348 -FVKLEKLRLLLKLVTP-------SVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSV----------------- 402 (746)
T ss_pred -HHHHHHHHHHHHHcCc-------ccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHH-----------------
Confidence 3788888888776542 336679999999999999999999999999988765531
Q ss_pred CCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhh-hHHHHHHhh--h--cCchhhHHHHHHHHHHHhhccccc
Q psy14676 1310 DLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQ-YVPFVLKEI--E--NQPKRQYLLLHSLKEIISWQSTST 1384 (1827)
Q Consensus 1310 ~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~-~LP~Il~~i--~--~~~~~q~~~l~aL~Eii~~~~~s~ 1384 (1827)
....+..+++.+.+.. ++...+...+-++--.+... .++.+...+ . ..+..+..++|.|||+.....
T Consensus 403 ----a~~cV~~Ll~ll~~~~-~~v~e~i~vik~IlrkyP~~~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~--- 474 (746)
T PTZ00429 403 ----APDCANLLLQIVDRRP-ELLPQVVTAAKDIVRKYPELLMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIE--- 474 (746)
T ss_pred ----HHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHCccHHHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHh---
Confidence 2456666666665543 34444555555553332222 244444332 1 245567778999999855321
Q ss_pred cchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCCcc---hHHHHHhh-h-cCCHHHHHHHH
Q psy14676 1385 SGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNL---LPRLQESL-K-SNSALMRTTVL 1451 (1827)
Q Consensus 1385 ~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~~~---lP~L~~~l-~-~~~~~~R~t~l 1451 (1827)
-.+.++..+++.+..++..||-..-.+..|+....|... +.++.+.+ + +.++.+|.-+.
T Consensus 475 --------~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~~l~~vL~~~t~~~~d~DVRDRA~ 538 (746)
T PTZ00429 475 --------NGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGMEPQLNRVLETVTTHSDDPDVRDRAF 538 (746)
T ss_pred --------hHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcCCChhHHHHHH
Confidence 123444445555555566688887788889988887532 33333332 1 34555555444
|
|
| >KOG0166|consensus | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.6e-06 Score=106.88 Aligned_cols=265 Identities=16% Similarity=0.179 Sum_probs=182.6
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCch-hHHHH
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSF-HFVIL 81 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~-~~~il 81 (1827)
|++.+.+--+-.+++.+.+.-.. +.....+..-++|+|.+.+..+.++.++.+|--+|..++..-...-.-+ ....+
T Consensus 77 S~~~~~q~~a~~~~rkllS~~~~--ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agav 154 (514)
T KOG0166|consen 77 SDDPQQQLTATQAFRKLLSKERN--PPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAV 154 (514)
T ss_pred CCCHHHHHHHHHHHHHHHccCCC--CCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCch
Confidence 55555443344455555554443 2466667778999999999877689999999999999987544321111 22467
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh---HH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHh-chhhHHh
Q psy14676 82 TALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ---LY-TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQA-GHRFAEH 156 (1827)
Q Consensus 82 ~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~---~~-~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~-~~~~~p~ 156 (1827)
+.++..+.+++..||+.|+-|||+++...+.- .+ ...+++++..+..+......|.+.-++..+|+.- |..=...
T Consensus 155 p~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~ 234 (514)
T KOG0166|consen 155 PIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDV 234 (514)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHH
Confidence 77999999999999999999999999876532 22 2256778887776554578899999999999976 5433346
Q ss_pred HHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccch-HHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCC
Q psy14676 157 IERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHI-QSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDT 235 (1827)
Q Consensus 157 l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l-~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~ 235 (1827)
+..++|.+...+...|.++..-|.-|+..+...-++.+.-.+ ..++|.+...+...
T Consensus 235 v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~----------------------- 291 (514)
T KOG0166|consen 235 VAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS----------------------- 291 (514)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC-----------------------
Confidence 788999999999989999887777777666554444332222 13445555544331
Q ss_pred cccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhh-hHHhhhHHHHhhcC-CCCHhHHHHHHHHHHHHH
Q psy14676 236 EEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGD-MYRLVSPPLIARFK-EREENVKSDIFHAYMALL 313 (1827)
Q Consensus 236 ~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~-~~~~v~p~L~~~l~-e~ee~VR~aa~~al~~ll 313 (1827)
+-+|+..|.+++|.++......-.. +-...+|.|...+. ++++.+|++|+.+++.+.
T Consensus 292 ---------------------~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNIt 350 (514)
T KOG0166|consen 292 ---------------------SPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNIT 350 (514)
T ss_pred ---------------------CcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhh
Confidence 1157778888888866443322111 22356788888886 677789999999998887
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-05 Score=103.58 Aligned_cols=395 Identities=15% Similarity=0.129 Sum_probs=252.9
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHH
Q psy14676 5 KEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTA 83 (1827)
Q Consensus 5 ~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ 83 (1827)
.|++ +.++..|+.+...+++.. +...+.|.|..++.++ ++.||.-++..|+.+.++-.....- ....+++.
T Consensus 52 ~e~v-~~~~~iL~~~l~~~~~~~------l~~~~~~~L~~gL~h~-~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~ 123 (503)
T PF10508_consen 52 REQV-ELICDILKRLLSALSPDS------LLPQYQPFLQRGLTHP-SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPL 123 (503)
T ss_pred hHHH-HHHHHHHHHHHhccCHHH------HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHH
Confidence 3444 566677888888886643 3778889999999864 8999999999998887765432221 23478999
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHH-----HHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhH-
Q psy14676 84 LLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKL-----IDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHI- 157 (1827)
Q Consensus 84 ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l-----~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l- 157 (1827)
++.+|.+++..|.+.|+.+|..++..-. .+..+ ...+...+.+ .+..+|..+++++..++...++.+.-..
T Consensus 124 i~~~L~~~d~~Va~~A~~~L~~l~~~~~--~~~~l~~~~~~~~L~~l~~~-~~~~vR~Rv~el~v~i~~~S~~~~~~~~~ 200 (503)
T PF10508_consen 124 IIQCLRDPDLSVAKAAIKALKKLASHPE--GLEQLFDSNLLSKLKSLMSQ-SSDIVRCRVYELLVEIASHSPEAAEAVVN 200 (503)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHhCCch--hHHHHhCcchHHHHHHHHhc-cCHHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 9999999999999999999999997532 23333 3333333333 3567899999999999998887775433
Q ss_pred HHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchH--HHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCC
Q psy14676 158 ERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQ--SITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDT 235 (1827)
Q Consensus 158 ~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~--~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~ 235 (1827)
.++++.+++.+.++|.=+|..|++.+..++. .+.. ..|+. .+++.+...+... +
T Consensus 201 sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g-~~yL~~~gi~~~L~~~l~~~--------~-------------- 256 (503)
T PF10508_consen 201 SGLLDLLLKELDSDDILVQLNALELLSELAE-TPHG-LQYLEQQGIFDKLSNLLQDS--------E-------------- 256 (503)
T ss_pred ccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhH-HHHHHhCCHHHHHHHHHhcc--------c--------------
Confidence 2599999998887666678777777777766 3322 33432 3566665554321 0
Q ss_pred cccCCCCCCCCCCCCCCCccchhhHH-HHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHh
Q psy14676 236 EEEDGEDEGEDDNEYSDDDDMSWKVR-RAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLK 314 (1827)
Q Consensus 236 ~~~d~dde~e~~~e~sdddD~sWkVR-raAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~ 314 (1827)
+ |. + .-.+. -+..+-.+.++...|..+...|+.++..+...+...+...+..|+.++|.+..
T Consensus 257 -------~----dp--~----~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs 319 (503)
T PF10508_consen 257 -------E----DP--R----LSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGS 319 (503)
T ss_pred -------c----CC--c----ccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhC
Confidence 0 00 0 00011 12335667777655655556777777777788888999999999999998874
Q ss_pred hhcccCCCCCCCCCCCCCCCChHhhH----HhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHH
Q psy14676 315 GTRTFSPLTPSDPNQMDQEDSPLCLL----STQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIP 390 (1827)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp 390 (1827)
.. +| ...+ .+.+..+++.+....+....++|..|+..++.+....+..-.+.+..+..
T Consensus 320 t~-----------------~G-~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~ 381 (503)
T PF10508_consen 320 TV-----------------EG-KQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITE 381 (503)
T ss_pred CH-----------------HH-HHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 32 11 2223 34677788888888877888899999988888876544322222333344
Q ss_pred HHHHHhhhhhccc-CCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh--hhhhhhHHhhh
Q psy14676 391 DVTSVAEWDEEEG-LGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR--DLIGDMYRLVS 467 (1827)
Q Consensus 391 ~i~~~L~~~~~~~-~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~--~~f~~~~~~l~ 467 (1827)
.....+.+++... .. +-.+. +=.-+|.+++..+..++.+-- ..+. ..+..+
T Consensus 382 ~w~~~~~~~~~~~~l~-----~~~~q--------------------PF~elr~a~~~~l~~l~~~~Wg~~~i~-~~~gfi 435 (503)
T PF10508_consen 382 SWYESLSGSPLSNLLM-----SLLKQ--------------------PFPELRCAAYRLLQALAAQPWGQREIC-SSPGFI 435 (503)
T ss_pred HHHHHhcCCchHHHHH-----HHhcC--------------------CchHHHHHHHHHHHHHhcCHHHHHHHH-hCccHH
Confidence 4444432211000 00 00000 001289999999999986432 2222 224455
Q ss_pred hhHHHhhcchhhhhHHHHHHHHHHHHhh
Q psy14676 468 PPLIARFKEREENVKSDIFHAYMALLKG 495 (1827)
Q Consensus 468 ~~L~~~~~d~~~~Vr~~a~~~l~~L~~~ 495 (1827)
..++..-.+.....+++=++.++.|.+.
T Consensus 436 e~lldr~~E~~K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 436 EYLLDRSTETTKEGKEAKYDIIKALAKS 463 (503)
T ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 5566666666667777777777777654
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG1062|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.6e-05 Score=96.89 Aligned_cols=291 Identities=16% Similarity=0.228 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhh
Q psy14676 264 AAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQ 343 (1827)
Q Consensus 264 Aak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 343 (1827)
|.-+|+.+++ .+..+.+.|.+...++.+++.||+-|+.|...+++.. | ..
T Consensus 127 AL~alg~i~s------~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~----------P--------------~l 176 (866)
T KOG1062|consen 127 ALCALGNICS------PEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV----------P--------------DL 176 (866)
T ss_pred HHHHhhccCC------HHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC----------c--------------hH
Confidence 4445555543 2356677888888889999999999999998888642 1 24
Q ss_pred hHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCC
Q psy14676 344 VPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDE 423 (1827)
Q Consensus 344 lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~ 423 (1827)
+..+++..-+.|.|++..|-.+...++.+++..-|+.+. |...++|.+...|++-.+..+..
T Consensus 177 ~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~-~fr~l~~~lV~iLk~l~~~~ysp----------------- 238 (866)
T KOG1062|consen 177 VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALS-YFRDLVPSLVKILKQLTNSGYSP----------------- 238 (866)
T ss_pred HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHHHHhcCCCCC-----------------
Confidence 556677788889999999999999999999999887654 55668888888876643333321
Q ss_pred CCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCC
Q psy14676 424 GEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLT 503 (1827)
Q Consensus 424 ~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~ 503 (1827)
||+--. .=.||++--+-.++..++..+.+..+.....|.++......+.
T Consensus 239 -----eydv~g-----------------------i~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdssk--- 287 (866)
T KOG1062|consen 239 -----EYDVHG-----------------------ISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSK--- 287 (866)
T ss_pred -----ccCccC-----------------------CCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccc---
Confidence 111100 0124444433344444544444444444444455544332110
Q ss_pred CCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchh
Q psy14676 504 PSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDD 583 (1827)
Q Consensus 504 ~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~ 583 (1827)
+..|.++=.++..++. . ..+...|...+..+.+.+..+|.|+||++++.|...+. .|+.
T Consensus 288 ----------N~GnAILYE~V~TI~~----I--~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~-----~d~~ 346 (866)
T KOG1062|consen 288 ----------NAGNAILYECVRTIMD----I--RSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQ-----QDPT 346 (866)
T ss_pred ----------cchhHHHHHHHHHHHh----c--cCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhc-----CCcH
Confidence 0011111111122211 1 11223445556666677889999999999999998864 5888
Q ss_pred hHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHHHHHH
Q psy14676 584 SERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTL 663 (1827)
Q Consensus 584 ~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l 663 (1827)
...+--..++.|++|+|.-+|.-|+..+-.+++.-- +..++.+|..||.+.+...|-.+-.-+..+
T Consensus 347 avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~N--------------v~~mv~eLl~fL~~~d~~~k~~~as~I~~l 412 (866)
T KOG1062|consen 347 AVQRHRSTILECLKDPDVSIKRRALELSYALVNESN--------------VRVMVKELLEFLESSDEDFKADIASKIAEL 412 (866)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc--------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 888999999999999999999999997776663321 223467888888888777777766655555
Q ss_pred HhhCC
Q psy14676 664 LVNYP 668 (1827)
Q Consensus 664 ~~~~~ 668 (1827)
...|.
T Consensus 413 aEkfa 417 (866)
T KOG1062|consen 413 AEKFA 417 (866)
T ss_pred HHhcC
Confidence 55554
|
|
| >KOG0891|consensus | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.0062 Score=88.11 Aligned_cols=197 Identities=17% Similarity=0.257 Sum_probs=151.1
Q ss_pred HHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHh--------ccCChhhHHHHHHHHHHHHHhcccccc
Q psy14676 999 PAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESL--------KSNSALMRTTHQSNQTFNVIIQRNDIH 1070 (1827)
Q Consensus 999 p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L--------~s~~~~~R~~a~~~L~~l~~~~~~~l~ 1070 (1827)
|..+..++..++++..++|..+...+|.++..+|..++|.++... .+.-...++.....+..+.......+.
T Consensus 564 ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~ 643 (2341)
T KOG0891|consen 564 PDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLIS 643 (2341)
T ss_pred chhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHH
Confidence 555667888888889999999999999999999999999998876 112234455555555566666666777
Q ss_pred ccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHH
Q psy14676 1071 NHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQE 1150 (1827)
Q Consensus 1071 ~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~e 1150 (1827)
+| +.+++-.+...++|....+...+..++++|+.+ ++.+...+++.++..+.+.+.+.+ ...
T Consensus 644 ~~----------v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v-------~g~~~~~~~~~~~~~~~~~l~~~s-~~~ 705 (2341)
T KOG0891|consen 644 PY----------VGPILLVLLPKLQDPSSGVEKAVLETIGELCAV-------GGEEMVKWVDELFSLIIKMLQDQS-SLG 705 (2341)
T ss_pred hh----------cCchHHHHHHHHhccchhhHHHHHHHHHHHHHh-------ccchhhhccchHHHHHHHHHHHhh-hhh
Confidence 77 888888888899999899999999999999965 235566677777777777776332 456
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh--hhhhhHHHHHHhhhhhhh---HHHHHHHHHHHhcCCCccccchhhhhhHh
Q psy14676 1151 VKERAISCMGQIICNLGDYLKS--ELPVCLPILLDRLRNEIT---RLTTVKALTKIAASPLRIDLRPILTDGIP 1219 (1827)
Q Consensus 1151 Vre~Ai~alg~l~~~~g~~l~~--~l~~lL~~Ll~~L~~e~t---R~~av~al~~ia~~~~~~dl~p~~~~~l~ 1219 (1827)
.|+++..+++.+.+..|..+.| ..|.++..+.+.++.+.- |.++++.+|..+. .+|+.+....
T Consensus 706 rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~------~d~~~~~~~~ 773 (2341)
T KOG0891|consen 706 KRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGA------LDPYKHKVTE 773 (2341)
T ss_pred chhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcc------cchhHHHHHh
Confidence 7999999999999999998777 578899999988876653 9999999995543 3555554333
|
|
| >KOG0166|consensus | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.9e-06 Score=102.62 Aligned_cols=347 Identities=14% Similarity=0.132 Sum_probs=225.0
Q ss_pred hHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhc-CCchhhHHHHHHHHHHHHH
Q psy14676 1036 LPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVG-DNFYKITAEALLVLQQFVK 1114 (1827)
Q Consensus 1036 lP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~-D~~~~V~~eAl~~l~~lv~ 1114 (1827)
.+...+.+.+++...+..+...+..+.+.... -|- ..+. -..++|.++.+++ +.+++++-||.+++..++.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~--ppi----~~vi--~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAs 139 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERN--PPI----DEVI--QSGVVPRLVEFLSRDDNPTLQFEAAWALTNIAS 139 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCC--CCH----HHHH--HcCcHHHHHHHHccCCChhHHHHHHHHHHHHhc
Confidence 45566666777777677777766644443332 111 0011 2268899999995 7889999999999998884
Q ss_pred HhccCCCCCCCCcchhHH-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHH
Q psy14676 1115 VIRPLTSPSSYDFAPFTS-DIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLT 1193 (1827)
Q Consensus 1115 ~l~~~~~~~~~~~~~~l~-~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~ 1193 (1827)
. +......+++ ..++.++..+. ..+..|++.|+.|+|.++..... ++. -
T Consensus 140 g-------tse~T~~vv~agavp~fi~Ll~--s~~~~v~eQavWALgNIagds~~-----~Rd----------------~ 189 (514)
T KOG0166|consen 140 G-------TSEQTKVVVDAGAVPIFIQLLS--SPSADVREQAVWALGNIAGDSPD-----CRD----------------Y 189 (514)
T ss_pred C-------chhhccccccCCchHHHHHHhc--CCcHHHHHHHHHHHhccccCChH-----HHH----------------H
Confidence 2 1111111111 12233333344 67888999999999998743211 111 0
Q ss_pred HHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhH-HHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCCh
Q psy14676 1194 TVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQR-ALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDL 1272 (1827)
Q Consensus 1194 av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r-~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~ 1272 (1827)
.+ -..+++.|..++.++.. .....+.-+|..|+......-+-+.+..++|.|..++.+.|.
T Consensus 190 vl------------------~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~ 251 (514)
T KOG0166|consen 190 VL------------------SCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDE 251 (514)
T ss_pred HH------------------hhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCH
Confidence 00 02234555555555543 344556778888887543222225788999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhh-----
Q psy14676 1273 HIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGN----- 1347 (1827)
Q Consensus 1273 ~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~----- 1347 (1827)
.+..-+.-+++.+....+... +--++ ..+.|.+...|...+..|+..|..++|+|+.|+
T Consensus 252 ~Vl~Da~WAlsyLsdg~ne~i------------q~vi~----~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq 315 (514)
T KOG0166|consen 252 EVLTDACWALSYLTDGSNEKI------------QMVID----AGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQ 315 (514)
T ss_pred HHHHHHHHHHHHHhcCChHHH------------HHHHH----ccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHH
Confidence 999999999988876433211 10011 246788889999999999999999999987664
Q ss_pred --h-hhhHHHHHHhhhcCch--hhHHHHHHHHHHHhhccccccchhhhhc-hHHHHHHHHhhhhcCCchhHHHHHHHHHH
Q psy14676 1348 --L-QQYVPFVLKEIENQPK--RQYLLLHSLKEIISWQSTSTSGVAQLQQ-FVPAIWAQLFLHCECQEEGTRNVVAECLG 1421 (1827)
Q Consensus 1348 --l-~~~LP~Il~~i~~~~~--~q~~~l~aL~Eii~~~~~s~~g~~~L~~-~~~~i~~~L~~~~~~~~e~vR~~aAecLG 1421 (1827)
+ ...||.+...+...++ .+.-+.|.|.-|.. +. ..+... .-..++|.|+..+...+..+|.-||-+++
T Consensus 316 ~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~----~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIs 389 (514)
T KOG0166|consen 316 VVINSGALPVLSNLLSSSPKESIKKEACWTISNITA--GN----QEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAIS 389 (514)
T ss_pred HHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CC----HHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHH
Confidence 2 2477888887765433 23446777777654 11 234443 23467788888888888899999999999
Q ss_pred HhhccCC---------CcchHHHHHhhhcCCHHHHHHHHHHHHHHhhh
Q psy14676 1422 KLTLIDP---------SNLLPRLQESLKSNSALMRTTVLTAVKFTISD 1460 (1827)
Q Consensus 1422 kL~~~~p---------~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~ 1460 (1827)
.++.... ..+++.|..+|.-.+...-..++.++..++..
T Consensus 390 N~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 390 NLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred hhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence 9997442 24677788888766776666677788877753
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3e-06 Score=98.29 Aligned_cols=199 Identities=21% Similarity=0.301 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhC-c----ccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCccc
Q psy14676 344 VPSLVKALQCQLREKSIRTRQDCLALLRELVQTL-P----GCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEE 418 (1827)
Q Consensus 344 lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl-~----~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~e 418 (1827)
+.++.+.+.+.-.+.++..|..++.-+..+.... + +.+..++..+++.+...+.
T Consensus 5 ~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~--------------------- 63 (228)
T PF12348_consen 5 FEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLS--------------------- 63 (228)
T ss_dssp -GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S----------------------
T ss_pred HHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHh---------------------
Confidence 3444444544456789999999999998888765 1 1223334444455555542
Q ss_pred CCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhccc
Q psy14676 419 DGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRT 498 (1827)
Q Consensus 419 d~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~ 498 (1827)
|....|-..|+.++..++...|..|.||++.++|.|+..+++....||..|..++..+++..+.
T Consensus 64 ----------------d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~ 127 (228)
T PF12348_consen 64 ----------------DLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY 127 (228)
T ss_dssp ----------------HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H
T ss_pred ----------------hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc
Confidence 2345688899999999999999889999999999999999999999999999999999876441
Q ss_pred CCCCCCCCCcccccCCCccchhhchhhHH-HHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhc
Q psy14676 499 FSPLTPSDPNQMDQEDSPVCLLSTQVPSL-VKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDS 577 (1827)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~ 577 (1827)
. ..+ +..+. ...++..|.+|..++.-+...+....
T Consensus 128 ~-------------------------~~~~~~~l~-------------------~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 128 S-------------------------PKILLEILS-------------------QGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp ---------------------------HHHHHHHH-------------------HHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred H-------------------------HHHHHHHHH-------------------HHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 0 111 23333 33444445555444444444443311
Q ss_pred ---cccch-hhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhc
Q psy14676 578 ---IKLDD-DSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAA 623 (1827)
Q Consensus 578 ---~~~d~-~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~ 623 (1827)
-.+.. ...+.+.+.+..++.|.+++||..|.+++..+.+.+++.+.
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 11111 12467899999999999999999999999999999888654
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.1e-05 Score=97.81 Aligned_cols=290 Identities=20% Similarity=0.298 Sum_probs=190.0
Q ss_pred HHHHHHHHHhcCCCHH--HHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHhhhcC---------CCC---HHHHHHHHHH
Q psy14676 38 ITGKLSTAIEKQEDVS--VQLEALDILSDLLSRFGALLPS-FHFVILTALLPQLS---------SPR---QAVRKRTIVA 102 (1827)
Q Consensus 38 L~P~Ll~~l~~~~~~~--v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll~~L~---------~~~---~~VRk~Ai~a 102 (1827)
++|++++..-...... .....+..++.++......+.. .|..++..+...+- ... .....+.+.-
T Consensus 91 lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (415)
T PF12460_consen 91 LVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVIL 170 (415)
T ss_pred HHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHH
Confidence 8899987663211111 2356677777777766666655 45566666655443 111 1245555555
Q ss_pred HHHHHHhhchhH----HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhc-ccCchHHHH
Q psy14676 103 LSHLVMSCNLQL----YTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYS-REEDDELRE 177 (1827)
Q Consensus 103 L~~l~~~~~~~~----~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~-~~~~delRe 177 (1827)
+..+...++.+. ...++..++....+..+...|..++++++.+++..+.. ..++.++..+.... ...+++.|.
T Consensus 171 ~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~--~~l~~~l~~~~~~~~~~~~~~~~~ 248 (415)
T PF12460_consen 171 FSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD--DDLDEFLDSLLQSISSSEDSELRP 248 (415)
T ss_pred HHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh--hhHHHHHHHHHhhhcccCCcchhH
Confidence 566666655442 34466666666555555889999999999999874321 13444444444433 444566665
Q ss_pred HHHHHHHHHHHhC-CCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccc
Q psy14676 178 FCLQACEAFVQRC-PKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDM 256 (1827)
Q Consensus 178 ~al~ale~~~~~~-p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~ 256 (1827)
.+++.+ .|+.+. =-.-.|....++..+++.+..
T Consensus 249 ~~~~~~-~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--------------------------------------------- 282 (415)
T PF12460_consen 249 QALEIL-IWITKALVMRGHPLATELLDKLLELLSS--------------------------------------------- 282 (415)
T ss_pred HHHHHH-HHHHHHHHHcCCchHHHHHHHHHHHhCC---------------------------------------------
Confidence 665544 233210 000013333444555544311
Q ss_pred hhhHHHHHHHHHHHHHHHcCC-------------chhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCC
Q psy14676 257 SWKVRRAAAKCLEAIIATRRD-------------LIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLT 323 (1827)
Q Consensus 257 sWkVRraAak~L~~l~~~~~~-------------~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~ 323 (1827)
.++.+.+|++++-+..-.++ +-+.+|..++|.|++.+++.....|..-+.|++.+++.+
T Consensus 283 -~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~v------- 354 (415)
T PF12460_consen 283 -PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNV------- 354 (415)
T ss_pred -hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhC-------
Confidence 13555677777766654221 123478899999999999888889999999999999643
Q ss_pred CCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHH
Q psy14676 324 PSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSV 395 (1827)
Q Consensus 324 ~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~ 395 (1827)
+.+.+.++++.++|.+++.|.-+++.+|.+++..+..+...-|..+.+|+..|+|.+.+.
T Consensus 355 ------------P~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 355 ------------PKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred ------------CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 357789999999999999999899999999999999999999999999999999998764
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0023 Score=77.66 Aligned_cols=103 Identities=20% Similarity=0.320 Sum_probs=73.6
Q ss_pred chhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHh-hhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHH
Q psy14676 581 DDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKAL-TKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLL 659 (1827)
Q Consensus 581 d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~-~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~ 659 (1827)
+++...++.|.|-.-+.|.-.-|+-.+.+.+.++.... + .+++...+..|-.+|+..+..+|.+++..
T Consensus 258 n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~-----------~~~~~~~vs~L~~fL~s~rv~~rFsA~Ri 326 (898)
T COG5240 258 NSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVG-----------SQFVDQTVSSLRTFLKSTRVVLRFSAMRI 326 (898)
T ss_pred ChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccC-----------HHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 45567788899999999988888888888887765332 2 24677888999999999999999999999
Q ss_pred HHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHH
Q psy14676 660 LDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTL 699 (1827)
Q Consensus 660 l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~ 699 (1827)
+|.+...|+..+..- =.++-.+++|+.+.|+..|.
T Consensus 327 ln~lam~~P~kv~vc-----N~evEsLIsd~Nr~IstyAI 361 (898)
T COG5240 327 LNQLAMKYPQKVSVC-----NKEVESLISDENRTISTYAI 361 (898)
T ss_pred HHHHHhhCCceeeec-----ChhHHHHhhcccccchHHHH
Confidence 999976666432210 11233445555665555553
|
|
| >KOG2274|consensus | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.02 Score=73.94 Aligned_cols=246 Identities=15% Similarity=0.164 Sum_probs=144.3
Q ss_pred ccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCC
Q psy14676 1044 KSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPS 1123 (1827)
Q Consensus 1044 ~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~ 1123 (1827)
.+.....|.+|+..+.... ....+.+ ++|.++..+++...+....+-.--..++...++ +.|...+.
T Consensus 501 ~~~~~~~ki~a~~~~~~~~--~~~vl~~----------~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~-~dpef~as 567 (1005)
T KOG2274|consen 501 MDVPPPVKISAVRAFCGYC--KVKVLLS----------LQPMILDGLLQLASKSSDEVLVLLMEALSSVVK-LDPEFAAS 567 (1005)
T ss_pred cCCCCchhHHHHHHHHhcc--Cceeccc----------cchHHHHHHHHHcccccHHHHHHHHHHHHHHhc-cChhhhhh
Confidence 4556789999998887443 3344444 488899999888887766666555555665554 33322111
Q ss_pred -CCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHHHHh
Q psy14676 1124 -SYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIA 1202 (1827)
Q Consensus 1124 -~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~av~al~~ia 1202 (1827)
...+.|++..+| .....|+-|-..+-.++..++... ...+++...++|.++.-+..+.+
T Consensus 568 ~~skI~P~~i~lF-------~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~e~~iPslisil~~~~~------------ 627 (1005)
T KOG2274|consen 568 MESKICPLTINLF-------LKYSEDPQVASLAQDLFEELLQIA-ANYGPMQERLIPSLISVLQLNAD------------ 627 (1005)
T ss_pred hhcchhHHHHHHH-------HHhcCCchHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHHHcCccc------------
Confidence 122334433333 233456677777777777777643 33445556666666544332111
Q ss_pred cCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhc-CCCChhHHHHHHHH
Q psy14676 1203 ASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLV-SESDLHIAQLTLTL 1281 (1827)
Q Consensus 1203 ~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll-~d~D~~l~~~al~~ 1281 (1827)
++...+-..+++-|.+++++.++.++...+...+|++.+.. -..|-...+.+-+|
T Consensus 628 ------------------------~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~Ec 683 (1005)
T KOG2274|consen 628 ------------------------KAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATEC 683 (1005)
T ss_pred ------------------------ccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHH
Confidence 11123345678888888998888898888888898887654 44577788999999
Q ss_pred HHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhh-----------hhhhhh
Q psy14676 1282 LTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIA-----------VGNLQQ 1350 (1827)
Q Consensus 1282 L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~-----------~~~l~~ 1350 (1827)
|..++...+.. ++.--++-|. ..-.++.++-+.+.- +....+|.-.|++. ..|+++
T Consensus 684 Lra~Is~~~eq-----~~t~~~e~g~-----~~~yImqV~sqLLdp---~~sds~a~~VG~lV~tLit~a~~el~~n~d~ 750 (1005)
T KOG2274|consen 684 LRALISVTLEQ-----LLTWHDEPGH-----NLWYIMQVLSQLLDP---ETSDSAAAFVGPLVLTLITHASSELGPNLDQ 750 (1005)
T ss_pred HHHHHhcCHHH-----HHhhccCCCc-----cHHHHHHHHHHHcCC---ccchhHHHHHhHHHHHHHHHHHHHhchhHHH
Confidence 99988754321 1111111111 123567777766643 33445555666632 235555
Q ss_pred hHHHHHHhh
Q psy14676 1351 YVPFVLKEI 1359 (1827)
Q Consensus 1351 ~LP~Il~~i 1359 (1827)
+|-.++..+
T Consensus 751 IL~Avisrm 759 (1005)
T KOG2274|consen 751 ILRAVISRL 759 (1005)
T ss_pred HHHHHHHHH
Confidence 555555544
|
|
| >KOG1992|consensus | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.024 Score=72.54 Aligned_cols=201 Identities=15% Similarity=0.173 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHHHHHHh--hCCCCCh--hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHH
Q psy14676 5 KEQLRDISSIGLKTVIS--ELPLGSN--ALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVI 80 (1827)
Q Consensus 5 ~~~~Rdi~~~~Lktvi~--~lp~~~~--~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~i 80 (1827)
+.+.|=+++.+.|+-|. +.|...+ .+..+.+..+-.-+++.+-+. ...++.---++|+-+.. ..+...++++
T Consensus 52 d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s-~~~iQ~qlseal~~Ig~---~DFP~kWptL 127 (960)
T KOG1992|consen 52 DPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSS-PFNIQKQLSEALSLIGK---RDFPDKWPTL 127 (960)
T ss_pred ChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHhc---cccchhhHHH
Confidence 46789999999999998 4444432 222233333333333444332 34444333333332221 1344478889
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHH-----hhchhHHHH--------------HHHHHHHhcc-CCCCHH-------
Q psy14676 81 LTALLPQLSSPRQAVRKRTIVALSHLVM-----SCNLQLYTK--------------LIDFLLEGLT-TNKSTS------- 133 (1827)
Q Consensus 81 l~~ll~~L~~~~~~VRk~Ai~aL~~l~~-----~~~~~~~~~--------------l~~~ll~~L~-~~~~~~------- 133 (1827)
++-+...|++.+-.+-........++-. .-++++|.+ ++....+..+ .+++..
T Consensus 128 l~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~ 207 (960)
T KOG1992|consen 128 LPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFG 207 (960)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHH
Confidence 9999888886554332222222221211 112333322 1122222221 122222
Q ss_pred HHHHHHHHHHHHHH-HhchhhHHhHHHHHHHHHhhcccC------c-------hHHHHHHHHHHHHHHHhCCCccccchH
Q psy14676 134 TNRTYIQCFAAICR-QAGHRFAEHIERVMPLILKYSREE------D-------DELREFCLQACEAFVQRCPKEITPHIQ 199 (1827)
Q Consensus 134 ~r~~ai~~l~~la~-~~~~~~~p~l~~i~p~l~~~~~~~------~-------delRe~al~ale~~~~~~p~e~~p~l~ 199 (1827)
+....+..+-++.- -.|+.|..|+++-|+.+.++++.+ + +++|..-.+-+.-++.+.+++|.||++
T Consensus 208 vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~ 287 (960)
T KOG1992|consen 208 VLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLP 287 (960)
T ss_pred HHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHH
Confidence 33334444445433 358899999999999999988621 1 245544445556667788999999999
Q ss_pred HHHHHHHHHh
Q psy14676 200 SITELCLTYI 209 (1827)
Q Consensus 200 ~ii~~ll~~l 209 (1827)
..+...-..+
T Consensus 288 ~fv~~~W~LL 297 (960)
T KOG1992|consen 288 DFVTATWNLL 297 (960)
T ss_pred HHHHHHHHHH
Confidence 9886654443
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00024 Score=91.68 Aligned_cols=408 Identities=16% Similarity=0.165 Sum_probs=249.2
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHhhchhH-HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhH-HHHH
Q psy14676 84 LLPQLSSPRQAVRKRTIVALSHLVMSCNLQL-YTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHI-ERVM 161 (1827)
Q Consensus 84 ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~-~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l-~~i~ 161 (1827)
++.+|++.+...-..++.+|..+........ ..++.+.+..+|.. +++.+|+.++..++.++++......-.. .+++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~ 121 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTH-PSPKVRRLALKQLGRIARHSEGAAQLLVDNELL 121 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHH
Confidence 7777877665555777888888888766544 56677777777765 5689999999999998876544322211 5689
Q ss_pred HHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccch-HHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCC
Q psy14676 162 PLILKYSREEDDELREFCLQACEAFVQRCPKEITPHI-QSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDG 240 (1827)
Q Consensus 162 p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l-~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~ 240 (1827)
+.++..+.+++.++.+.|..++..++.. +..+...+ +..++.+...+...
T Consensus 122 ~~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~---------------------------- 172 (503)
T PF10508_consen 122 PLIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQS---------------------------- 172 (503)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhcc----------------------------
Confidence 9999999999999988888888777753 22111110 11133333333110
Q ss_pred CCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHH-hhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhccc
Q psy14676 241 EDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYR-LVSPPLIARFKEREENVKSDIFHAYMALLKGTRTF 319 (1827)
Q Consensus 241 dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~-~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~ 319 (1827)
+. .+|.-+..++..+++..++.+....+ .+++.+++.+++.+--||..++..+..++...
T Consensus 173 --------------~~--~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~--- 233 (503)
T PF10508_consen 173 --------------SD--IVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETP--- 233 (503)
T ss_pred --------------CH--HHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh---
Confidence 00 35554666666776665554433222 37888889898878889999999999998521
Q ss_pred CCCCCCCCCCCCCCCChHhhHHh--hhHHHHHHHHHHhccC-CHhHHH-HHHHHHHHHHHhCcccccCchhhHHHHHHHH
Q psy14676 320 SPLTPSDPNQMDQEDSPLCLLST--QVPSLVKALQCQLREK-SIRTRQ-DCLALLRELVQTLPGCLAPSLPALIPDVTSV 395 (1827)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~l~~--~lp~Iv~~l~~~L~d~-~~~vR~-a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~ 395 (1827)
+..+++.+ .++.++..+...-.|+ ...+.. +.+.+++.++.+-|..+....|.++..+...
T Consensus 234 ---------------~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~ 298 (503)
T PF10508_consen 234 ---------------HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSM 298 (503)
T ss_pred ---------------hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 12344443 3555555555544444 223333 6667778888876665555556666666665
Q ss_pred hhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHh-h-hhh----hhhHHhhhhh
Q psy14676 396 AEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATR-R-DLI----GDMYRLVSPP 469 (1827)
Q Consensus 396 L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~-~-~~f----~~~~~~l~~~ 469 (1827)
++. + .-..+..|+++++.++.+. | ..+ .+-+...+..
T Consensus 299 ~~s-----------------------------------~--d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~ 341 (503)
T PF10508_consen 299 LES-----------------------------------Q--DPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKA 341 (503)
T ss_pred hCC-----------------------------------C--ChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHH
Confidence 421 0 0126789999999999444 3 444 2344444555
Q ss_pred HHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHH-
Q psy14676 470 LIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLA- 548 (1827)
Q Consensus 470 L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~- 548 (1827)
...........+|..+++++..++..... .+ + ..+..+....-+.++... ..
T Consensus 342 ~~~~~~~~~~~lk~r~l~al~~il~~~~~-~~--------------~-----~~i~~~~~~w~~~~~~~~-------~~~ 394 (503)
T PF10508_consen 342 IGDAIKSGSTELKLRALHALASILTSGTD-RQ--------------D-----NDILSITESWYESLSGSP-------LSN 394 (503)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHhcCCC-Cc--------------h-----HHHHHHHHHHHHHhcCCc-------hHH
Confidence 55555555668999999999999854320 00 0 011233333333333322 22
Q ss_pred HHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhh
Q psy14676 549 LLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALT 619 (1827)
Q Consensus 549 ~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~ 619 (1827)
.+...++.|=||+|.-++.-+...+...-....-...+.+++.++.--.+.+.++++.=..++.++++...
T Consensus 395 ~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 395 LLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 56777889999999988887777665411110011223445555555556666777776777777776655
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG2274|consensus | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.031 Score=72.31 Aligned_cols=281 Identities=18% Similarity=0.224 Sum_probs=154.6
Q ss_pred HHHHHHHHHHhh--hcHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHH
Q psy14676 836 LTIVALSHLVMS--CNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDEL 913 (1827)
Q Consensus 836 ~Ai~aL~~l~~~--~~~~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~v 913 (1827)
||.-+++-++.. ....++..+....+..+.-+..+.+|-+++.+|...+ ..+-+.+.+|.++-.+++...+..+++
T Consensus 469 Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~qlas~~s~ev 546 (1005)
T KOG2274|consen 469 RAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGLLQLASKSSDEV 546 (1005)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHHHHHcccccHHH
Confidence 677777777666 6667777777777777766677788888888888887 677788999999999999888888887
Q ss_pred HHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhh
Q psy14676 914 REFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQ 993 (1827)
Q Consensus 914 re~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~ 993 (1827)
--.-++|+...+..-+ +..--.+ ..+-|..+..|...++
T Consensus 547 l~llmE~Ls~vv~~dp-ef~as~~-----------skI~P~~i~lF~k~s~----------------------------- 585 (1005)
T KOG2274|consen 547 LVLLMEALSSVVKLDP-EFAASME-----------SKICPLTINLFLKYSE----------------------------- 585 (1005)
T ss_pred HHHHHHHHHHHhccCh-hhhhhhh-----------cchhHHHHHHHHHhcC-----------------------------
Confidence 6666666665544211 1111111 0111222222210000
Q ss_pred hhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHhccCC----hhhHHHHHHHHHHHHHhccccc
Q psy14676 994 LQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNS----ALMRTTHQSNQTFNVIIQRNDI 1069 (1827)
Q Consensus 994 l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~----~~~R~~a~~~L~~l~~~~~~~l 1069 (1827)
.|+.-.+.+.+|+.+-. ...|.|-+. +.++|.++..+..+. +..-..++-.|..+....+..+
T Consensus 586 -DP~V~~~~qd~f~el~q--------~~~~~g~m~----e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL 652 (1005)
T KOG2274|consen 586 -DPQVASLAQDLFEELLQ--------IAANYGPMQ----ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPL 652 (1005)
T ss_pred -CchHHHHHHHHHHHHHH--------HHHhhcchH----HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCc
Confidence 01111111111111000 123333322 357899999996665 4556667777776777776665
Q ss_pred cccccchhhhhhhhhhhhHHHHHhhc-CCchhhHHHHHHHHHHHHHHhcc-C-CCCCCCCcchhHHHHHHHHHHHHhhcC
Q psy14676 1070 HNHNEETSFIYSFYYFLLSPVIASVG-DNFYKITAEALLVLQQFVKVIRP-L-TSPSSYDFAPFTSDIYQCTLVRLKAAD 1146 (1827)
Q Consensus 1070 ~~~~~~~~~~~~~l~~Lip~l~~~l~-D~~~~V~~eAl~~l~~lv~~l~~-~-~~~~~~~~~~~l~~l~~~ll~~L~~~D 1146 (1827)
-.. ++....|++.+++- ..+...-..|-.++..++.+=.+ . ..+..+.+ . +..++..+ ++|.
T Consensus 653 ~~~---------l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~-~-~~yImqV~-sqLL--- 717 (1005)
T KOG2274|consen 653 PNL---------LICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGH-N-LWYIMQVL-SQLL--- 717 (1005)
T ss_pred cHH---------HHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCc-c-HHHHHHHH-HHHc---
Confidence 432 36677888887773 22233322222333333332000 0 00111111 1 33444433 3454
Q ss_pred CCHHHHHHHHHHHHHHH----HHhhhhhhhhhhhhHHHHHHhhhhh
Q psy14676 1147 IDQEVKERAISCMGQII----CNLGDYLKSELPVCLPILLDRLRNE 1188 (1827)
Q Consensus 1147 ~d~eVre~Ai~alg~l~----~~~g~~l~~~l~~lL~~Ll~~L~~e 1188 (1827)
|++..+.|..-.|-++ .++|..+++.+..+|...+.|+.+-
T Consensus 718 -dp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~a 762 (1005)
T KOG2274|consen 718 -DPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQA 762 (1005)
T ss_pred -CCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHh
Confidence 3444555666666555 5557777788888888888777643
|
|
| >KOG0891|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.065 Score=78.12 Aligned_cols=542 Identities=18% Similarity=0.229 Sum_probs=290.4
Q ss_pred hhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHH
Q psy14676 473 RFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRE 552 (1827)
Q Consensus 473 ~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~ 552 (1827)
++....+++|..+..++.+++...-- .++ ..+..+ ++-..++..+..
T Consensus 489 ~~~~~~~e~r~~~~l~~~~ll~~~~~------------~~~---------~~~~~~------------~~v~~vl~~ll~ 535 (2341)
T KOG0891|consen 489 YLEADDSEIRKNAALTCCELLKYDII------------CSQ---------TSPHAL------------QVVKEVLSALLT 535 (2341)
T ss_pred HHhcccHHHHHHHHHHHHHHHhhhhh------------hhc---------ccchHH------------HHHHHHHHHHHH
Confidence 44455789999999999998865331 011 111111 122334444444
Q ss_pred h-hcCCCccccccchHHHHHHHhhhccccchh-hHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccc
Q psy14676 553 L-MTSSDKDFRFMATNDLMSELQKDSIKLDDD-SERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDL 630 (1827)
Q Consensus 553 ~-~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~-~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl 630 (1827)
. .+|++|++|...+.-+..- .|.. .++.....++..++|..-.++..++..+|++....+.+..+.++
T Consensus 536 ~aia~~~~~i~~~v~~~l~~~-------~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr--- 605 (2341)
T KOG0891|consen 536 VAIADTDPDIRIRVLSSLNER-------FDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLR--- 605 (2341)
T ss_pred HhccCCCcchhhhHHhhhccc-------hhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHH---
Confidence 4 6788999887766555411 1221 45666777899999999999999999999887643333332232
Q ss_pred cccccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCC
Q psy14676 631 RPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQP 710 (1827)
Q Consensus 631 ~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~ 710 (1827)
-..+..+..+...+..+.+..+-..+..++..-..-+.+..-..+..-+|.+.+.+. -..+.+...+..++...-
T Consensus 606 ----~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s-~~~~~~~~~~~eL~~v~g 680 (2341)
T KOG0891|consen 606 ----KTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSS-GVEKAVLETIGELCAVGG 680 (2341)
T ss_pred ----HHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccch-hhHHHHHHHHHHHHHhcc
Confidence 123455666677777777777766666665544444455555555666666655444 334444444554443211
Q ss_pred Cccchhhh-hhhhHHHhh-hh--cccccchhhhhhHHHHHHHHHhhh----CCCCCHHHHHHHhhccccc--cchhhhhh
Q psy14676 711 NALVEPAA-ASILPQVLQ-IA--KSPLLQGAALTSMLEFFKSLVLAE----LPGLSFSELLNMLIAPVMT--GTALHKQA 780 (1827)
Q Consensus 711 ~~~~~~~~-~~llp~ll~-l~--~s~~~~~~al~~l~~~~~~lv~~~----~~~~~~~~ll~~L~~~~~~--~~~~~~~a 780 (1827)
.... .| .++++.+.. +. .++..+.+++..+.+ +++.. .|+..++++++.|++...+ .+.+.++
T Consensus 681 -~~~~-~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~----l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~- 753 (2341)
T KOG0891|consen 681 -EEMV-KWVDELFSLIIKMLQDQSSLGKRLAALKALGQ----LESSTGYVVDPYLDYPELLDILINILKTEQSSTIRRE- 753 (2341)
T ss_pred -chhh-hccchHHHHHHHHHHHhhhhhchhHHHHHhhh----hhcccceEecccccChHHHHHHHHHHhHhhhhHHHHH-
Confidence 1122 23 456666655 33 244456677755444 44433 6888999999999987654 2333333
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHH-HHHHhhhcHHHHHHHHHH
Q psy14676 781 FHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVAL-SHLVMSCNLQLYTKLIDF 859 (1827)
Q Consensus 781 l~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL-~~l~~~~~~~~~~~l~~~ 859 (1827)
+++-.|.++ +.++ +.+.+........- -.+.+.+.. .+.-+ .-+.+.+ +.++.-..-.
T Consensus 754 ---~v~~~g~~g-~~d~-~~~~~~~~~~~~~~------------~~~~~k~~~---~~~~~~~~~~~~~-~e~~p~v~I~ 812 (2341)
T KOG0891|consen 754 ---AIRLLGLLG-ALDP-YKHKVTEGTSASKI------------SSEQIKSDI---DISLLESGVNPSN-DEYYPAVTIH 812 (2341)
T ss_pred ---HHHHhhhhc-ccch-hHHHHHhhhhhHhh------------hhccccccc---hHHHHHhhhhhhh-hhhhhHHHHH
Confidence 344444222 2221 11111111100000 000000000 11101 0111111 3444444334
Q ss_pred HHhhhcCCC-ChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCcccccccc
Q psy14676 860 LLEGLTTNK-STSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQS 938 (1827)
Q Consensus 860 l~~~l~~~~-~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~ 938 (1827)
..+.+..++ ....-...+++...+....+-....|++.++|.++..........+++..+-+...++..+..+.||.+.
T Consensus 813 ~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~r~~~~~~~~f~~~q~~~~~~~~~~h~~~~~~~ 892 (2341)
T KOG0891|consen 813 ALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVMRSCPPNLREFYFQQLTSLVAIVRQHIRPYMES 892 (2341)
T ss_pred HHhhhhhhhhhHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHHHhcCcchhHHHHHhhhhhhhccchhHhhhhhh
Confidence 444433333 4566788899999999999999999999999999999887667778887777777777777777777654
Q ss_pred ccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhh
Q psy14676 939 IGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRN 1018 (1827)
Q Consensus 939 i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~ 1018 (1827)
+...+ +.|. . ...+...++.+....+.
T Consensus 893 i~~~i-------------~~~~-----------------------~-~~~~l~~~~~~l~~~i~---------------- 919 (2341)
T KOG0891|consen 893 IFTLI-------------KDFW-----------------------P-PDTSLQITIISLIEDIA---------------- 919 (2341)
T ss_pred HHHHH-------------Hhhh-----------------------h-hHHHHHHHHHHHHHHHH----------------
Confidence 33211 1111 0 00000011111111110
Q ss_pred HHHHHHhhhcccCCCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCc
Q psy14676 1019 VVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNF 1098 (1827)
Q Consensus 1019 ~a~e~Lg~L~~~~~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~ 1098 (1827)
...-+.+.... +..+|..+..........|.-....+..+ ...+..+..| ..-+.|++++.+.+.+
T Consensus 920 --~~l~~~f~~~l-~~~~~~~l~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~----------~hl~~~~~vkl~~~~~ 985 (2341)
T KOG0891|consen 920 --VALGGEFKKYL-PELLPTMLTVLQHDKSKDRVVSRKVLQSL-QKFGSNLEQY----------LHLLLPPIVKLFEDPT 985 (2341)
T ss_pred --HHHHhHHHHhh-hhhccchheeecccccchHHHHHHhhHHH-HhcCccHHhh----------HhhhccHHHHHHhhhh
Confidence 01111111111 11222222222222233333333333322 1222333334 5578888888888874
Q ss_pred --hhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhh
Q psy14676 1099 --YKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDY 1169 (1827)
Q Consensus 1099 --~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~ 1169 (1827)
+.++-.++.+.+.+...+ ++..|...+...++..+..+ .+++......++.++...|..
T Consensus 986 ~~~~~~~~~l~t~~~l~~~~---------~~~~~~s~i~~~~~r~l~~s---~el~~~~~~~l~~l~~~~~~~ 1046 (2341)
T KOG0891|consen 986 VPLSIRKSALITIGRLAQQV---------DLSEYASRIIHPLVRVLSSS---PELRDVIMDTLIALVKQLGKD 1046 (2341)
T ss_pred hhHHHHhhHHHHHHHHHHhh---------HHHHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHHHHhhcCc
Confidence 566667787877777643 33345555555556666532 889999999999999888763
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.6e-05 Score=92.26 Aligned_cols=183 Identities=19% Similarity=0.268 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHhhC-CCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhh
Q psy14676 8 LRDISSIGLKTVISEL-PLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLP 86 (1827)
Q Consensus 8 ~Rdi~~~~Lktvi~~l-p~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~ 86 (1827)
.|--+-.-|+.++..- |...........+.+++.+...+.+. ...+...|+.+++.++..++..+.++...+++.++.
T Consensus 23 ~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~ 101 (228)
T PF12348_consen 23 ERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLK 101 (228)
T ss_dssp HHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 3444444566666555 22221222233445556666666533 456788999999999999999998888899999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc---hhhHHh--HHHHH
Q psy14676 87 QLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG---HRFAEH--IERVM 161 (1827)
Q Consensus 87 ~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~---~~~~p~--l~~i~ 161 (1827)
.+.+....+|..|..||..++..++ ....++..++....++.++.+|..+++++..+....+ ..+.+. ++.+.
T Consensus 102 ~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~ 179 (228)
T PF12348_consen 102 KLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLV 179 (228)
T ss_dssp GGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHH
Confidence 9999999999999999999999987 1123333444444455679999999999999998888 555543 58899
Q ss_pred HHHHhhcccCchHHHHHHHHHHHHHHHhCCCc
Q psy14676 162 PLILKYSREEDDELREFCLQACEAFVQRCPKE 193 (1827)
Q Consensus 162 p~l~~~~~~~~delRe~al~ale~~~~~~p~e 193 (1827)
+.+.+.++|.++++|+.|..++..|...+|+.
T Consensus 180 ~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 180 KALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp HHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 99999999999999999999999999888864
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG1991|consensus | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00084 Score=87.02 Aligned_cols=347 Identities=16% Similarity=0.236 Sum_probs=213.9
Q ss_pred HHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHhhccCCCCch----hHHHHHHHhhhcCCCCHHHHHHHHHHH
Q psy14676 35 CRRITGKLSTAIE-------KQEDVSVQLEALDILSDLLSRFGALLPSF----HFVILTALLPQLSSPRQAVRKRTIVAL 103 (1827)
Q Consensus 35 ~~~L~P~Ll~~l~-------~~~~~~v~~~al~iL~~l~~~~~~~l~~~----~~~il~~ll~~L~~~~~~VRk~Ai~aL 103 (1827)
...+++++.+-+. ...+++-+++||.++|.+++-+-.. .+| ..-+.+.++|.++++-.-.|.||+--+
T Consensus 408 l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~-s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl 486 (1010)
T KOG1991|consen 408 LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKK-SPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVL 486 (1010)
T ss_pred hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccC-CchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHH
Confidence 3445555554443 2237889999999999999665432 222 335778888999999999999999999
Q ss_pred HHHH-Hhhch-hHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc---hhhHHhHHHHHHHHHhhccc-CchHHHH
Q psy14676 104 SHLV-MSCNL-QLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG---HRFAEHIERVMPLILKYSRE-EDDELRE 177 (1827)
Q Consensus 104 ~~l~-~~~~~-~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~---~~~~p~l~~i~p~l~~~~~~-~~delRe 177 (1827)
+.++ ...++ ..+.+.++...+.|.++..-.||-.+.-++..+.++.. ..+.+|++.+|.-++...++ +.|.+-
T Consensus 487 ~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt- 565 (1010)
T KOG1991|consen 487 SQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLT- 565 (1010)
T ss_pred HHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHH-
Confidence 9999 45554 45677788888888766667788888888888888765 56999999999999998875 344442
Q ss_pred HHHHHHHHHHHhCCCccccchHHHHHHHHHH-hccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccc
Q psy14676 178 FCLQACEAFVQRCPKEITPHIQSITELCLTY-ITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDM 256 (1827)
Q Consensus 178 ~al~ale~~~~~~p~e~~p~l~~ii~~ll~~-l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~ 256 (1827)
..++.++...+++++||-..+...+-+. .+.-. ++++ +++++||.
T Consensus 566 ---~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~----~~~~---------------------------~~~~~ddk 611 (1010)
T KOG1991|consen 566 ---NVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQ----TSED---------------------------EDESDDDK 611 (1010)
T ss_pred ---HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHh----ccCC---------------------------CCccchHH
Confidence 3468999999999999987776666432 11100 0000 00111222
Q ss_pred hhhHHHHHHHHHHHHHHH---cCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCC
Q psy14676 257 SWKVRRAAAKCLEAIIAT---RRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQE 333 (1827)
Q Consensus 257 sWkVRraAak~L~~l~~~---~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~ 333 (1827)
.- .-.+-.+++.+++.+ +|+.+..+.+.+.|.+..-++..-.++=.+++.-...+--
T Consensus 612 ~i-aA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~------------------- 671 (1010)
T KOG1991|consen 612 AI-AASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTF------------------- 671 (1010)
T ss_pred HH-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh-------------------
Confidence 11 111223344455544 4566777777888887777654434433333322211100
Q ss_pred CChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccc---cCchhhHHHHHHHHhhhhhcccCCCCCCC
Q psy14676 334 DSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCL---APSLPALIPDVTSVAEWDEEEGLGGEGGG 410 (1827)
Q Consensus 334 ~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l---~~~l~~Llp~i~~~L~~~~~~~~~~~~~~ 410 (1827)
....+++.+=.+++.+.+.++++...--....-+|........+.+ ..|+..+...+..++..+
T Consensus 672 --~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e----------- 738 (1010)
T KOG1991|consen 672 --LSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSE----------- 738 (1010)
T ss_pred --hhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCC-----------
Confidence 0012344555566677777766655544455555555555555544 357777888888887421
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhh
Q psy14676 411 EGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARF 474 (1827)
Q Consensus 411 ~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~ 474 (1827)
.. +|+| ++.|.+.+..++-+++..+..+++..+...+..+
T Consensus 739 ---~~----------------~D~d-----~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l 778 (1010)
T KOG1991|consen 739 ---NG----------------EDSD-----CESACKLLEVIILNCKGLLDQYIPLFLELALSRL 778 (1010)
T ss_pred ---CC----------------chHH-----HHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHH
Confidence 00 0111 4568888888887777655555555444444444
|
|
| >KOG1060|consensus | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0006 Score=85.78 Aligned_cols=428 Identities=15% Similarity=0.220 Sum_probs=237.3
Q ss_pred hcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCccccccccccccC
Q psy14676 864 LTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHT 943 (1827)
Q Consensus 864 l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~ 943 (1827)
|.++.+..++++.=..++.+++ |.. ...+.|.+++-....+.||+-.-- .+..++.. -.|-+.
T Consensus 44 LdSnkd~~KleAmKRIia~iA~--G~d----vS~~Fp~VVKNVaskn~EVKkLVy----vYLlrYAE-eqpdLA------ 106 (968)
T KOG1060|consen 44 LDSNKDSLKLEAMKRIIALIAK--GKD----VSLLFPAVVKNVASKNIEVKKLVY----VYLLRYAE-EQPDLA------ 106 (968)
T ss_pred HhccccHHHHHHHHHHHHHHhc--CCc----HHHHHHHHHHHhhccCHHHHHHHH----HHHHHHhh-cCCCce------
Confidence 4445667777877777888876 444 445555566666667777743321 11111110 011000
Q ss_pred Ccchhhhh-HHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHH
Q psy14676 944 DLTSVADL-KQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAE 1022 (1827)
Q Consensus 944 ~~s~~~~L-~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e 1022 (1827)
.| ....-+.+.+.+..+|..|.+.+.++. +--+.|-.+-++-++..|.+.-||+.|+.
T Consensus 107 ------LLSIntfQk~L~DpN~LiRasALRvlSsIR---------------vp~IaPI~llAIk~~~~D~s~yVRk~AA~ 165 (968)
T KOG1060|consen 107 ------LLSINTFQKALKDPNQLIRASALRVLSSIR---------------VPMIAPIMLLAIKKAVTDPSPYVRKTAAH 165 (968)
T ss_pred ------eeeHHHHHhhhcCCcHHHHHHHHHHHHhcc---------------hhhHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 00 011224566677778877666554431 12245666677777778888999998888
Q ss_pred HHhhhcccCCCC---chHHHHHHhccCChhhHHHHHHHHHHHHHhcccccccc---------------------------
Q psy14676 1023 CLGKLTLIDPSN---LLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNH--------------------------- 1072 (1827)
Q Consensus 1023 ~Lg~L~~~~~~~---llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~--------------------------- 1072 (1827)
++-+|-...+++ ++..|...|.+.++.+--+|+-++..++-+.-+.+.+|
T Consensus 166 AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYA 245 (968)
T KOG1060|consen 166 AIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYA 245 (968)
T ss_pred hhHHHhcCChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHH
Confidence 888887776533 55555555544433333333333221111100111110
Q ss_pred -------------ccchh-----------hhhh-----hhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCC
Q psy14676 1073 -------------NEETS-----------FIYS-----FYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPS 1123 (1827)
Q Consensus 1073 -------------~~~~~-----------~~~~-----~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~ 1123 (1827)
.|+.. ...| =+.-|+...-.++...++.|..++++++-.++ |.
T Consensus 246 R~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lA----P~---- 317 (968)
T KOG1060|consen 246 RHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLA----PK---- 317 (968)
T ss_pred HhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhC----CH----
Confidence 00000 0000 12222233333333444444444443333322 20
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhh-hHHHHHHHHHHHh
Q psy14676 1124 SYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEI-TRLTTVKALTKIA 1202 (1827)
Q Consensus 1124 ~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~-tR~~av~al~~ia 1202 (1827)
..+..+..+++..|. ..++||...+.++..+.......+.||++..+ =+-.+.+ +..-=+..|+.++
T Consensus 318 -----~~~~~i~kaLvrLLr---s~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFf----v~ssDp~~vk~lKleiLs~La 385 (968)
T KOG1060|consen 318 -----NQVTKIAKALVRLLR---SNREVQYVVLQNIATISIKRPTLFEPHLKSFF----VRSSDPTQVKILKLEILSNLA 385 (968)
T ss_pred -----HHHHHHHHHHHHHHh---cCCcchhhhHHHHHHHHhcchhhhhhhhhceE----eecCCHHHHHHHHHHHHHHHh
Confidence 134455555555444 34567777788887777766666666655421 1111111 1223344455555
Q ss_pred cCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHH
Q psy14676 1203 ASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLL 1282 (1827)
Q Consensus 1203 ~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L 1282 (1827)
... -+..++.+|..+++..++.+-.+++.|++.++++.+. +-+..+..|..+++..|..|...+...+
T Consensus 386 ~es-------ni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Llsshde~Vv~eaV~vI 453 (968)
T KOG1060|consen 386 NES-------NISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLSSHDELVVAEAVVVI 453 (968)
T ss_pred hhc-------cHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHhcccchhHHHHHHHH
Confidence 422 2467788999999999988889999999998887544 3445677778899999999999999999
Q ss_pred HHHHHhCCCccch--------------h-hHHhhhhhcccccCCC--chhhHHHHHHHhcCCCCHhHHHHHHHHHhhh--
Q psy14676 1283 TSIAKIQPNALVE--------------P-AAASILPQIGRHTDLT--SVADLKQVILNAFTPTSEEVKSAASYTLGSI-- 1343 (1827)
Q Consensus 1283 ~~l~~~~~~~~~~--------------~-~i~~~lgeiG~~~~~~--~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i-- 1343 (1827)
..+.+..|..-.. | +=+.++|-+|.++... -.|++...+.+.|.++.++||..+...-..+
T Consensus 454 k~Llq~~p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl 533 (968)
T KOG1060|consen 454 KRLLQKDPAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYL 533 (968)
T ss_pred HHHHhhChHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchhchHHHHHHHHhhccccchhhHHHHHhhhhheE
Confidence 9999887753211 1 1234456666665221 2378889999999999999999775432232
Q ss_pred -hhhhhhhhHHHHHHhhhc
Q psy14676 1344 -AVGNLQQYVPFVLKEIEN 1361 (1827)
Q Consensus 1344 -~~~~l~~~LP~Il~~i~~ 1361 (1827)
...+.+.+...+++..+-
T Consensus 534 ~~~~~~kll~~Yv~~L~~y 552 (968)
T KOG1060|consen 534 TNIDQTKLLVQYVFELARY 552 (968)
T ss_pred echhhHHHHHHHHHHHhcc
Confidence 223345555666666554
|
|
| >KOG1967|consensus | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.051 Score=70.53 Aligned_cols=153 Identities=12% Similarity=0.098 Sum_probs=119.5
Q ss_pred hhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy14676 1081 SFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMG 1160 (1827)
Q Consensus 1081 ~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg 1160 (1827)
.|...++|.+++......-.++.--+.+++.+.+.+ ..+.+.|.+..++|.+++.|. =.|.+||-.+..++.
T Consensus 863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~v------P~~vllp~~~~LlPLLLq~Ls--~~D~~v~vstl~~i~ 934 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNV------PKQVLLPQFPMLLPLLLQALS--MPDVIVRVSTLRTIP 934 (1030)
T ss_pred HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcC------CHHhhccchhhHHHHHHHhcC--CCccchhhhHhhhhh
Confidence 457778888887776433344444455555555432 135677999999999999998 456678999999999
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHhhhhhh-----hHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHH
Q psy14676 1161 QIICNLGDYLKSELPVCLPILLDRLRNEI-----TRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLS 1235 (1827)
Q Consensus 1161 ~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~-----tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~ 1235 (1827)
.++...+.....++.+++|.++..-++.+ .|..|+++++.+......-.+-||.++++..+..-|.+..|-+|..
T Consensus 935 ~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~e 1014 (1030)
T KOG1967|consen 935 MLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKE 1014 (1030)
T ss_pred HHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHH
Confidence 99998888888899999999987754222 3999999999999865566677899999999999999999999999
Q ss_pred HHHHHH
Q psy14676 1236 TLLLLD 1241 (1827)
Q Consensus 1236 al~aL~ 1241 (1827)
|.++=+
T Consensus 1015 Av~tR~ 1020 (1030)
T KOG1967|consen 1015 AVDTRQ 1020 (1030)
T ss_pred HHHHhh
Confidence 887543
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.5e-05 Score=99.27 Aligned_cols=295 Identities=15% Similarity=0.151 Sum_probs=181.1
Q ss_pred chHHHHHHhccC-ChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHH
Q psy14676 1035 LLPRLQESLKSN-SALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFV 1113 (1827)
Q Consensus 1035 llP~L~~~L~s~-~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv 1113 (1827)
+++.+.-++++- ....|..|+.+|..++....+..+ +++++|.++.+..|+..+||+.|+.++.++.
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~------------LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L 490 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVK------------LDRVLPYFVHLLMDSEADVRATALETLTELL 490 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHH------------HhhhHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 455555555443 356789999999877665443322 9999999999999999999999999999988
Q ss_pred HHhccCCCCCCCCcchhHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHH-HHHHhhhhhhhH
Q psy14676 1114 KVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAAD-IDQEVKERAISCMGQIICNLGDYLKSELPVCLP-ILLDRLRNEITR 1191 (1827)
Q Consensus 1114 ~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D-~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~-~Ll~~L~~e~tR 1191 (1827)
..+++.- ..+-.-|.+-|+|.+-.-+. | ...-||-+-..+++.++..+-..+. ....+=. -+.+...+| |
T Consensus 491 ~~Vr~~~---~~daniF~eYlfP~L~~l~~--d~~~~~vRiayAsnla~LA~tA~rFle-~~q~~~~~g~~n~~nse-t- 562 (1431)
T KOG1240|consen 491 ALVRDIP---PSDANIFPEYLFPHLNHLLN--DSSAQIVRIAYASNLAQLAKTAYRFLE-LTQELRQAGMLNDPNSE-T- 562 (1431)
T ss_pred hhccCCC---cccchhhHhhhhhhhHhhhc--cCccceehhhHHhhHHHHHHHHHHHHH-HHHHHHhcccccCcccc-c-
Confidence 7776531 12222345556665544443 5 5566888888999998876533211 0000000 001111111 0
Q ss_pred HHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCC
Q psy14676 1192 LTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESD 1271 (1827)
Q Consensus 1192 ~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D 1271 (1827)
........++....+.+-..+.+++.|++.-+|.+-++.+..|+.-+|.+=..+ .+++.|...|+|.|
T Consensus 563 ---------~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND---~iLshLiTfLNDkD 630 (1431)
T KOG1240|consen 563 ---------APEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSND---VILSHLITFLNDKD 630 (1431)
T ss_pred ---------ccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhccccc---chHHHHHHHhcCcc
Confidence 000000111111122233446678888988999999999999999887653333 47888899999999
Q ss_pred hhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhh-hhhhh-
Q psy14676 1272 LHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIA-VGNLQ- 1349 (1827)
Q Consensus 1272 ~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~-~~~l~- 1349 (1827)
+++|.+-++-+..++- -+|.+- .-.-++|++.+.|.|..|-|-..|..+|..+. .|++.
T Consensus 631 w~LR~aFfdsI~gvsi----------------~VG~rs---~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K 691 (1431)
T KOG1240|consen 631 WRLRGAFFDSIVGVSI----------------FVGWRS---VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRK 691 (1431)
T ss_pred HHHHHHHHhhccceEE----------------EEeeee---HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccch
Confidence 9999986655433221 223321 12469999999999999999999988877644 34443
Q ss_pred hhHHHHHHhhhc---Cch--hhHHHHHHHHHHHhhc
Q psy14676 1350 QYVPFVLKEIEN---QPK--RQYLLLHSLKEIISWQ 1380 (1827)
Q Consensus 1350 ~~LP~Il~~i~~---~~~--~q~~~l~aL~Eii~~~ 1380 (1827)
+++-.|++.+-- -|+ .|+.++.-|.+++.++
T Consensus 692 ~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 692 PAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 244444443221 121 3445555555555543
|
|
| >KOG1020|consensus | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0024 Score=85.77 Aligned_cols=512 Identities=14% Similarity=0.128 Sum_probs=275.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q psy14676 41 KLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLID 120 (1827)
Q Consensus 41 ~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~ 120 (1827)
.++..+. ++.+.+|..|+.+|+.+.+-=+..+ .++.+...+-.-+.|....||++|+.-+|.++.+.++ ...++.+
T Consensus 820 ~Il~~l~-e~~ialRtkAlKclS~ive~Dp~vL--~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e-~~~qyY~ 895 (1692)
T KOG1020|consen 820 LILSVLG-ENAIALRTKALKCLSMIVEADPSVL--SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE-LIFQYYD 895 (1692)
T ss_pred HHHHHhc-CchHHHHHHHHHHHHHHHhcChHhh--cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH-HHHHHHH
Confidence 3344454 4578999999999999988644433 4678888888999999999999999999999998755 5567889
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHH-HHHHHhCCCcc-c---
Q psy14676 121 FLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQAC-EAFVQRCPKEI-T--- 195 (1827)
Q Consensus 121 ~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~al-e~~~~~~p~e~-~--- 195 (1827)
.+.+++..+ ...||+.++..+-.+|...|..-. +..++--|+.-.+|+.+.+.+.+.+.| ..|..-+|+.. .
T Consensus 896 ~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf~~--i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~ 972 (1692)
T KOG1020|consen 896 QIIERILDT-GVSVRKRVIKILRDICEETPDFSK--IVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAK 972 (1692)
T ss_pred HHHhhcCCC-chhHHHHHHHHHHHHHHhCCChhh--HHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHH
Confidence 999998764 578999999999999999887422 344444455555655555777666655 56666666521 1
Q ss_pred -------------------cchHHHHHHHHHHhc-------cCCC-CC-ccc-cc-ccCCCCCCCCCCCCcccCCCCCCC
Q psy14676 196 -------------------PHIQSITELCLTYIT-------YDPN-YN-YED-EE-EGLGGEGGGEGMDTEEEDGEDEGE 245 (1827)
Q Consensus 196 -------------------p~l~~ii~~ll~~l~-------~dpn-~~-~~d-dd-~~~~~~~~~~~~d~~~~d~dde~e 245 (1827)
-++++++-.+++.-. +.|- +. ..- .+ ....-.....+.+.+
T Consensus 973 ~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~--------- 1043 (1692)
T KOG1020|consen 973 ARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESD--------- 1043 (1692)
T ss_pred HHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhH---------
Confidence 112222222221100 0000 00 000 00 000000000000000
Q ss_pred CCCCCCCCccchhhHHH-HHHHHHHHHHHHcCCchh-hhHHhhhHHHHhhcCCCCHh-HHHHHHHHHHHHHhhhcccCCC
Q psy14676 246 DDNEYSDDDDMSWKVRR-AAAKCLEAIIATRRDLIG-DMYRLVSPPLIARFKEREEN-VKSDIFHAYMALLKGTRTFSPL 322 (1827)
Q Consensus 246 ~~~e~sdddD~sWkVRr-aAak~L~~l~~~~~~~l~-~~~~~v~p~L~~~l~e~ee~-VR~aa~~al~~ll~~~~~~~~~ 322 (1827)
+ .-+.+-++|. +....|..++..+|-++. .+...+-|+|...-+.+++. +-..+ ..+++++-+....
T Consensus 1044 ~------~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~v----i~Ile~VlPlv~~ 1113 (1692)
T KOG1020|consen 1044 D------MNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYV----IQILECVLPLVAN 1113 (1692)
T ss_pred h------hhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHH----HHHHHHHhhhhcc
Confidence 0 0001113454 455667778888898887 68888999998775555443 23333 3334443322111
Q ss_pred CCCCCCCCCCCCChHhhHHhh------------hHHHHHHHHHHhc--cCCHhHHHHHHHHHHHHHHhCccccc-C----
Q psy14676 323 TPSDPNQMDQEDSPLCLLSTQ------------VPSLVKALQCQLR--EKSIRTRQDCLALLRELVQTLPGCLA-P---- 383 (1827)
Q Consensus 323 ~~~~~~~~~~~~~~~~~l~~~------------lp~Iv~~l~~~L~--d~~~~vR~a~~~ll~~L~~vl~~~l~-~---- 383 (1827)
+ .+.....++.. +-..|+-+....+ -+..++..+|++.+-...+++.+... .
T Consensus 1114 ~---------sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~ 1184 (1692)
T KOG1020|consen 1114 P---------SESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIV 1184 (1692)
T ss_pred c---------hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 0 01222222221 2222222222222 24456666777776666666554432 1
Q ss_pred chhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCC--------CcccHHHHHHHHHHHHHHHHHh
Q psy14676 384 SLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDD--------DDMSWKVRRAAAKCLEAIIATR 455 (1827)
Q Consensus 384 ~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~--------~d~~w~vr~~a~~~l~~l~~~~ 455 (1827)
..|.+...| ..+.--..|.-- ..+..++..+.++.+.-++.- .+..-.+|..|+..++-+|..+
T Consensus 1185 ~~p~l~Rsi-ftlG~l~Ryfdf-------~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~h 1256 (1692)
T KOG1020|consen 1185 NFPKLQRSI-FTLGLLSRYFDF-------PKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQH 1256 (1692)
T ss_pred hhHHHHHHH-HHHHHHHHhccC-------CCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhC
Confidence 223222222 111111111110 011111111111111000000 0011347999999999999999
Q ss_pred hhhhh-hhHHhhhhhHHHhhcch-hhh-hHHHHHHHHHHHH-------hhcccCCCCCCCCCcccccCCCccchhhchhh
Q psy14676 456 RDLIG-DMYRLVSPPLIARFKER-EEN-VKSDIFHAYMALL-------KGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVP 525 (1827)
Q Consensus 456 ~~~f~-~~~~~l~~~L~~~~~d~-~~~-Vr~~a~~~l~~L~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 525 (1827)
+..|. +.+-.+ +..-+++. ... -+..+++++..++ ...|..|..... ..+ .
T Consensus 1257 p~l~~~~~v~nl---y~~ila~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k---~ed-------------l 1317 (1692)
T KOG1020|consen 1257 PSLFTSREVLNL---YDEILADDNSDIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNK---SED-------------L 1317 (1692)
T ss_pred chhhhhHHHHHH---HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhh---HHH-------------H
Confidence 97666 433333 33333333 222 3667777777764 233333332100 000 0
Q ss_pred HHHHHHHHHhhhhh--hhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhH
Q psy14676 526 SLVKALQCQLREKS--IRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEV 603 (1827)
Q Consensus 526 ~~~~~l~~~l~~~~--~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV 603 (1827)
.=+.......+... ....+.+|+.+++..-+.|-.+|..|++-+.-.+.+|.++- ...+|.|+.+-.|+..+.
T Consensus 1318 kem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVhP-----~~cvPtLIAL~Tdp~~~~ 1392 (1692)
T KOG1020|consen 1318 KEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVHP-----VHCVPTLIALETDPSQAI 1392 (1692)
T ss_pred HhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCCc-----cchhhhheeecCChHHHH
Confidence 00000011111110 11455678888888888888999999998888888877663 467888999999999999
Q ss_pred HHHHHHhhhhHHHHhh
Q psy14676 604 QNLAVKCLGPLFKALT 619 (1827)
Q Consensus 604 ~~~A~~~lg~l~~~~~ 619 (1827)
|+.|-..|..+=++-.
T Consensus 1393 r~~Ad~LL~eid~kY~ 1408 (1692)
T KOG1020|consen 1393 RHVADELLKEIDEKYE 1408 (1692)
T ss_pred HHHHHHHHHHHHHhhH
Confidence 9999888776654433
|
|
| >KOG1060|consensus | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0047 Score=78.08 Aligned_cols=439 Identities=15% Similarity=0.152 Sum_probs=239.7
Q ss_pred hhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCC---chHHHHHHhccCChhhHHHHHHHHHHHHHhcccccc
Q psy14676 994 LQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSN---LLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIH 1070 (1827)
Q Consensus 994 l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~---llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~ 1070 (1827)
.+.+||... +...+...+|++.+.--|=+.+...|+- =+..+++.|+++++-.|..|+..|..+-.+.
T Consensus 69 vS~~Fp~VV----KNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsIRvp~----- 139 (968)
T KOG1060|consen 69 VSLLFPAVV----KNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSIRVPM----- 139 (968)
T ss_pred HHHHHHHHH----HHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcchhh-----
Confidence 344555544 4446667777776665565556555543 2568999999999999999999887542211
Q ss_pred ccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHH
Q psy14676 1071 NHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQE 1150 (1827)
Q Consensus 1071 ~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~e 1150 (1827)
..|-++-.|.+++.|..+.||..|..++..+.. ++ .+..+ +|.+.+-.-|. |.++-
T Consensus 140 -----------IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld-------~e~k~---qL~e~I~~LLa--D~spl 195 (968)
T KOG1060|consen 140 -----------IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LD-------PEQKD---QLEEVIKKLLA--DRSPL 195 (968)
T ss_pred -----------HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CC-------hhhHH---HHHHHHHHHhc--CCCCc
Confidence 022344456678899999999999888877764 22 12223 33333333333 88999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh-HHHHHHHHHHHhcCCCc---c----------------cc
Q psy14676 1151 VKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT-RLTTVKALTKIAASPLR---I----------------DL 1210 (1827)
Q Consensus 1151 Vre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t-R~~av~al~~ia~~~~~---~----------------dl 1210 (1827)
|-.+|+.|+..+-..-=+.+-+++..+-..|.+ -++| ..-.+..|...|..... . ..
T Consensus 196 VvgsAv~AF~evCPerldLIHknyrklC~ll~d---vdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~ 272 (968)
T KOG1060|consen 196 VVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPD---VDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKY 272 (968)
T ss_pred chhHHHHHHHHhchhHHHHhhHHHHHHHhhccc---hhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccc
Confidence 999999999887655444555555554333322 2455 45555555555542210 0 00
Q ss_pred ----chhhh-----hhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHH
Q psy14676 1211 ----RPILT-----DGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTL 1281 (1827)
Q Consensus 1211 ----~p~~~-----~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~ 1281 (1827)
.||+. -++.....++-..+.++-.++..++..++- +.-...++..|.+++..+. .++...+..
T Consensus 273 ~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP-------~~~~~~i~kaLvrLLrs~~-~vqyvvL~n 344 (968)
T KOG1060|consen 273 NEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAP-------KNQVTKIAKALVRLLRSNR-EVQYVVLQN 344 (968)
T ss_pred cccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCC-------HHHHHHHHHHHHHHHhcCC-cchhhhHHH
Confidence 12221 122222223334445555555555544322 1233445555555555432 334444444
Q ss_pred HHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhc---CCCCHhHHHHHHHHHhhhh-hhhhhhhHHHHHH
Q psy14676 1282 LTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAF---TPTSEEVKSAASYTLGSIA-VGNLQQYVPFVLK 1357 (1827)
Q Consensus 1282 L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~---~~~s~eVr~aAa~aLG~i~-~~~l~~~LP~Il~ 1357 (1827)
+..++...| .++.-.++.| .+++..++.-=..-|.+++ .+|++.+|+.+..
T Consensus 345 Ia~~s~~~~-------------------------~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~ 399 (968)
T KOG1060|consen 345 IATISIKRP-------------------------TLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQT 399 (968)
T ss_pred HHHHHhcch-------------------------hhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Confidence 444443222 2222233333 2233445554455566643 4688888888888
Q ss_pred hhhcCchhhHHHHHHHHHHHhhccccccchhhhhc-hHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCCc---chH
Q psy14676 1358 EIENQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQ-FVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSN---LLP 1433 (1827)
Q Consensus 1358 ~i~~~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~-~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~~---~lP 1433 (1827)
.+.+.++ + ++--+++-+-.+... .....+ |+.++...+-. .++.|-..+.--+.+|...+|.. ++-
T Consensus 400 YI~s~d~-~-faa~aV~AiGrCA~~----~~sv~~tCL~gLv~Llss----hde~Vv~eaV~vIk~Llq~~p~~h~~ii~ 469 (968)
T KOG1060|consen 400 YIKSSDR-S-FAAAAVKAIGRCASR----IGSVTDTCLNGLVQLLSS----HDELVVAEAVVVIKRLLQKDPAEHLEILF 469 (968)
T ss_pred HHhcCch-h-HHHHHHHHHHHHHHh----hCchhhHHHHHHHHHHhc----ccchhHHHHHHHHHHHHhhChHHHHHHHH
Confidence 8877544 2 333333333222111 112333 66666555544 46777777778899999988853 666
Q ss_pred HHHHhhhc-CCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHH
Q psy14676 1434 RLQESLKS-NSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQ 1512 (1827)
Q Consensus 1434 ~L~~~l~~-~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr 1512 (1827)
+|...+.+ .-+..|++++=-+..-+... ++..-+++..+.+...|+.+.||
T Consensus 470 ~La~lldti~vp~ARA~IiWLige~~e~v----------------------------pri~PDVLR~laksFs~E~~evK 521 (968)
T KOG1060|consen 470 QLARLLDTILVPAARAGIIWLIGEYCEIV----------------------------PRIAPDVLRKLAKSFSDEGDEVK 521 (968)
T ss_pred HHHHHhhhhhhhhhhceeeeeehhhhhhc----------------------------chhchHHHHHHHHhhccccchhh
Confidence 77666643 23444544443232222111 11223444555566789999999
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHh
Q psy14676 1513 NLAVKCLGPLVNKVKEFQVETIVDALCS 1540 (1827)
Q Consensus 1513 ~~a~~~Lg~L~~~l~~~~~~~~v~~l~~ 1540 (1827)
......-.+|.-. +.++.+.++.-.+.
T Consensus 522 lQILnL~aKLyl~-~~~~~kll~~Yv~~ 548 (968)
T KOG1060|consen 522 LQILNLSAKLYLT-NIDQTKLLVQYVFE 548 (968)
T ss_pred HHHHHhhhhheEe-chhhHHHHHHHHHH
Confidence 9888887777532 23334444444443
|
|
| >KOG4224|consensus | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00018 Score=82.79 Aligned_cols=401 Identities=16% Similarity=0.181 Sum_probs=228.2
Q ss_pred hcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhh-hh
Q psy14676 1094 VGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYL-KS 1172 (1827)
Q Consensus 1094 l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l-~~ 1172 (1827)
..|....+++.++....-.-+.++.. -.+..+.++..++ ..|+.++.+|..++|.++-+.+... --
T Consensus 57 ySDnlnlqrsaalafAeitek~vr~V-----------sres~epvl~llq--s~d~~Iq~aa~~alGnlAVn~enk~liv 123 (550)
T KOG4224|consen 57 YSDNLNLQRSAALAFAEITEKGVRRV-----------SRESNEPVLALLQ--SCDKCIQCAAGEALGNLAVNMENKGLIV 123 (550)
T ss_pred eccccccchHHHHHHHHHHHHHHHHh-----------hhhhhhHHHHHHh--CcchhhhhhhhhhhccceeccCCceEEE
Confidence 35666667777665444333333311 1122233333444 6788999999999999887776521 12
Q ss_pred hhhhhHHHHHHhhhhhh-hHHHHHHHHHHHhcCCC-ccccchhh-hhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCC
Q psy14676 1173 ELPVCLPILLDRLRNEI-TRLTTVKALTKIAASPL-RIDLRPIL-TDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPS 1249 (1827)
Q Consensus 1173 ~l~~lL~~Ll~~L~~e~-tR~~av~al~~ia~~~~-~~dl~p~~-~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~ 1249 (1827)
.+.-+=+.+.+.+.+.. .|.-+++++..++.... +. .+. ...+..+.++-+..+-.+|..+.++|-.+-...-.
T Consensus 124 ~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~---kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~En 200 (550)
T KOG4224|consen 124 SLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKV---KIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSREN 200 (550)
T ss_pred eccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchh---hhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhh
Confidence 23333334555555443 38888999988885321 10 111 12344455533323455777888888776554332
Q ss_pred C---cChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcC
Q psy14676 1250 A---ISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFT 1326 (1827)
Q Consensus 1250 ~---l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~ 1326 (1827)
+ ... +-+|.|..++...|+.++..+...++.++.. +..|+.-...-|.+++.+...+.
T Consensus 201 Rr~LV~a----G~lpvLVsll~s~d~dvqyycttaisnIaVd---------------~~~Rk~Laqaep~lv~~Lv~Lmd 261 (550)
T KOG4224|consen 201 RRVLVHA----GGLPVLVSLLKSGDLDVQYYCTTAISNIAVD---------------RRARKILAQAEPKLVPALVDLMD 261 (550)
T ss_pred hhhhhcc----CCchhhhhhhccCChhHHHHHHHHhhhhhhh---------------HHHHHHHHhcccchHHHHHHHHh
Confidence 2 122 2345667788889999988877777665531 11122101122679999999999
Q ss_pred CCCHhHHHHHHHHHhhhhhhh------h-hhhHHHHHHhhhcCchhhHHHH---HHHHHHHhhccccccchhhh---hch
Q psy14676 1327 PTSEEVKSAASYTLGSIAVGN------L-QQYVPFVLKEIENQPKRQYLLL---HSLKEIISWQSTSTSGVAQL---QQF 1393 (1827)
Q Consensus 1327 ~~s~eVr~aAa~aLG~i~~~~------l-~~~LP~Il~~i~~~~~~q~~~l---~aL~Eii~~~~~s~~g~~~L---~~~ 1393 (1827)
++++.||-.|..|||+++... . .--+|.+++.+++.. --+++ .+++-+-.+. |.+.+ ..|
T Consensus 262 ~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~--~plilasVaCIrnisihp-----lNe~lI~dagf 334 (550)
T KOG4224|consen 262 DGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPM--GPLILASVACIRNISIHP-----LNEVLIADAGF 334 (550)
T ss_pred CCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcc--hhHHHHHHHHHhhccccc-----Ccccceecccc
Confidence 999999999999999976532 1 124677777775531 12233 3333322111 01111 124
Q ss_pred HHHHHHHHhhhhcCCchhHHHHHHHHHHHhhc--------cCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCC
Q psy14676 1394 VPAIWAQLFLHCECQEEGTRNVVAECLGKLTL--------IDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSS 1465 (1827)
Q Consensus 1394 ~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~--------~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~ 1465 (1827)
+.-+...|-. .++|++.-.|...|-.|+- +..+.-+|.|.+++.+..-.+|.-+--++..+.-.
T Consensus 335 l~pLVrlL~~---~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~----- 406 (550)
T KOG4224|consen 335 LRPLVRLLRA---GDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN----- 406 (550)
T ss_pred hhHHHHHHhc---CCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc-----
Confidence 3333333322 3345455556566666654 33457789999999877665554443333332210
Q ss_pred ChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhh-hh-H-------HHHHH
Q psy14676 1466 DKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKE-FQ-V-------ETIVD 1536 (1827)
Q Consensus 1466 d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~-~~-~-------~~~v~ 1536 (1827)
+..+ ++| + -..++|.++.+..+...+||-||+++|+.+...++. .. . ..+-.
T Consensus 407 -d~~k----~~l---l-----------d~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g 467 (550)
T KOG4224|consen 407 -DNDK----EAL---L-----------DSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQG 467 (550)
T ss_pred -cccH----HHH---h-----------hcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHH
Confidence 0111 001 1 123568888899999999999999999999987642 11 1 11112
Q ss_pred HHHhhhcccccccccCCccchhHHHHHHHhhhhcc
Q psy14676 1537 ALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRN 1571 (1827)
Q Consensus 1537 ~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~~ 1571 (1827)
-|.+.+.++.. .+|+.|.+|+--.+|.
T Consensus 468 ~L~Rfl~S~~~--------tf~hia~wTI~qLle~ 494 (550)
T KOG4224|consen 468 RLARFLASHEL--------TFRHIARWTIQQLLED 494 (550)
T ss_pred HHHHHHhhhHH--------HHHHHHHHHHHHHHHh
Confidence 24444444333 7899999998777664
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0026 Score=80.47 Aligned_cols=347 Identities=17% Similarity=0.200 Sum_probs=217.0
Q ss_pred hHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHhhccCCC-----CchhH-HHHHHHhhhcC-----CCC--HHH
Q psy14676 33 NVCRRITGKLSTAIE----KQEDVSVQLEALDILSDLLSRFGALL-----PSFHF-VILTALLPQLS-----SPR--QAV 95 (1827)
Q Consensus 33 ~v~~~L~P~Ll~~l~----~~~~~~v~~~al~iL~~l~~~~~~~l-----~~~~~-~il~~ll~~L~-----~~~--~~V 95 (1827)
.+.+.++|+|++.+. ...+.+.....+..|..+++...... ..|.. .+++.++.... +.+ ..+
T Consensus 34 ~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~ 113 (415)
T PF12460_consen 34 QILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRV 113 (415)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHH
Confidence 456777777776653 23367778889999999988876544 11323 36666665531 222 566
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhcc---------CCCC--HHHHHHHHHHHHHHHHHhch-hhHHhHHHHHHH
Q psy14676 96 RKRTIVALSHLVMSCNLQLYTKLIDFLLEGLT---------TNKS--TSTNRTYIQCFAAICRQAGH-RFAEHIERVMPL 163 (1827)
Q Consensus 96 Rk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~---------~~~~--~~~r~~ai~~l~~la~~~~~-~~~p~l~~i~p~ 163 (1827)
=..+...++.++..++.+.-++++..+...+. .... .......+..+.++.....+ .-.|+..+++.-
T Consensus 114 L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~ 193 (415)
T PF12460_consen 114 LELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQS 193 (415)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHH
Confidence 66677777777778877655555555554332 1111 12334444455555544433 223456666666
Q ss_pred HHhhc-ccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCC
Q psy14676 164 ILKYS-REEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGED 242 (1827)
Q Consensus 164 l~~~~-~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dd 242 (1827)
+++.. +.+++..|..+++.+..++.+++.+= ++..++......+... . +
T Consensus 194 l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~-------~---------------------~ 243 (415)
T PF12460_consen 194 LLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSS-------E---------------------D 243 (415)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhccc-------C---------------------C
Confidence 66654 33457788899999999999886531 4445555554433000 0 0
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCC
Q psy14676 243 EGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPL 322 (1827)
Q Consensus 243 e~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~ 322 (1827)
+ ..|..+...+.-+.++.=-...+....++..|++.+.+ +++...+..+|+-++.-....
T Consensus 244 --------~-------~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~--- 303 (415)
T PF12460_consen 244 --------S-------ELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDV--- 303 (415)
T ss_pred --------c-------chhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHh---
Confidence 0 11222223332222221001123445556667777765 888999999999888531111
Q ss_pred CCCCCCCCCCCCC--hH-hhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcc-cccCchhhHHHHHHHHhhh
Q psy14676 323 TPSDPNQMDQEDS--PL-CLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPG-CLAPSLPALIPDVTSVAEW 398 (1827)
Q Consensus 323 ~~~~~~~~~~~~~--~~-~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~-~l~~~l~~Llp~i~~~L~~ 398 (1827)
.....+ ++ -+-+.....++|.+++..++.+...|..++..+..+....|. .+.++++.|+|.+.++|.-
T Consensus 304 -------l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~ 376 (415)
T PF12460_consen 304 -------LNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSL 376 (415)
T ss_pred -------cCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 011111 11 233456778888888888888777999999999999999997 4589999999999999821
Q ss_pred hhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHh
Q psy14676 399 DEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIAR 473 (1827)
Q Consensus 399 ~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~ 473 (1827)
.+..++.++++++..+....++.+.+|++.++|.|++.
T Consensus 377 -------------------------------------~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 377 -------------------------------------PDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred -------------------------------------CCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 12349999999999999999999999999999998763
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG1062|consensus | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0032 Score=80.08 Aligned_cols=384 Identities=15% Similarity=0.186 Sum_probs=217.0
Q ss_pred HHHHhhhhccccchhhHHHHHHhhhcccCC-CCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhh
Q psy14676 1003 AQLFLHCECQEEGTRNVVAECLGKLTLIDP-SNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYS 1081 (1827)
Q Consensus 1003 ~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~-~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~ 1081 (1827)
+.+.+-|++..--+--.|..+||.++.-.. ..+.|.+.+.++..++..|..|+...-.+....++.
T Consensus 110 NslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l------------- 176 (866)
T KOG1062|consen 110 NSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL------------- 176 (866)
T ss_pred HHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH-------------
Confidence 444433444444444445555666554322 458888888888888888887777777666665544
Q ss_pred hhhhhhHHHHHhhcCCchhhHHHHHHHH------------------HHHHHHhccCC------CC-CCCCcchhHHHHHH
Q psy14676 1082 FYYFLLSPVIASVGDNFYKITAEALLVL------------------QQFVKVIRPLT------SP-SSYDFAPFTSDIYQ 1136 (1827)
Q Consensus 1082 ~l~~Lip~l~~~l~D~~~~V~~eAl~~l------------------~~lv~~l~~~~------~~-~~~~~~~~l~~l~~ 1136 (1827)
+.-+++...+.++|.++.|-..++..+ +.|++.++.+- .+ -++--.||++--+=
T Consensus 177 -~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iL 255 (866)
T KOG1062|consen 177 -VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRIL 255 (866)
T ss_pred -HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHH
Confidence 445677777888888876644333322 33444444221 00 01112366653333
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhh--hhh-hhhhhhHHHHHHhhhhhhhHHHHHHHHHHHhcCCCccccchh
Q psy14676 1137 CTLVRLKAADIDQEVKERAISCMGQIICNLGD--YLK-SELPVCLPILLDRLRNEITRLTTVKALTKIAASPLRIDLRPI 1213 (1827)
Q Consensus 1137 ~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~--~l~-~~l~~lL~~Ll~~L~~e~tR~~av~al~~ia~~~~~~dl~p~ 1213 (1827)
.++.-|..+|. +-.+.-...|++++.++.. ..+ .-+-+++-.++..-.+..-|..|+..||
T Consensus 256 rlLriLGq~d~--daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLg-------------- 319 (866)
T KOG1062|consen 256 RLLRILGQNDA--DASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILG-------------- 319 (866)
T ss_pred HHHHHhcCCCc--cHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHH--------------
Confidence 34444553333 3344444445554444311 000 1233333334333333333555555444
Q ss_pred hhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCcc
Q psy14676 1214 LTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNAL 1293 (1827)
Q Consensus 1214 ~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~ 1293 (1827)
.||...+..+|..++..|..+++.-++. ++.=-..+..-+.|.|..++.-+++.+-.+....
T Consensus 320 ---------kFL~n~d~NirYvaLn~L~r~V~~d~~a-----vqrHr~tIleCL~DpD~SIkrralELs~~lvn~~---- 381 (866)
T KOG1062|consen 320 ---------KFLLNRDNNIRYVALNMLLRVVQQDPTA-----VQRHRSTILECLKDPDVSIKRRALELSYALVNES---- 381 (866)
T ss_pred ---------HHhcCCccceeeeehhhHHhhhcCCcHH-----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc----
Confidence 4554455668888888888777653332 2222223345568999999999999887766521
Q ss_pred chhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhh---hhhhHHHHHHhhhcCc-hhhHHH
Q psy14676 1294 VEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGN---LQQYVPFVLKEIENQP-KRQYLL 1369 (1827)
Q Consensus 1294 ~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~---l~~~LP~Il~~i~~~~-~~q~~~ 1369 (1827)
.+..+..-++..+...++++|..-+..+-.++-.. =.=|+.++++-+...+ =.++-.
T Consensus 382 -------------------Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv 442 (866)
T KOG1062|consen 382 -------------------NVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDV 442 (866)
T ss_pred -------------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhh
Confidence 23456777788888888999998887766654321 1225556665554322 234556
Q ss_pred HHHHHHHHhhccccccchhhhhch-HHHHHHHHhhh--hcCCchhHHHHHHHHHHHhh-------------ccCCCcchH
Q psy14676 1370 LHSLKEIISWQSTSTSGVAQLQQF-VPAIWAQLFLH--CECQEEGTRNVVAECLGKLT-------------LIDPSNLLP 1433 (1827)
Q Consensus 1370 l~aL~Eii~~~~~s~~g~~~L~~~-~~~i~~~L~~~--~~~~~e~vR~~aAecLGkL~-------------~~~p~~~lP 1433 (1827)
++.+..+|... ...+..| +..+|..+... ..-+++..-.+++.|||.-+ .+.++.++.
T Consensus 443 ~~nll~LIa~~------~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd 516 (866)
T KOG1062|consen 443 VNNLLRLIANA------FQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVD 516 (866)
T ss_pred HHHHHHHHhcC------CcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHH
Confidence 77777777621 1223232 23445444442 12345567788999999988 333467778
Q ss_pred HHHHhhh--cCCHHHHHHHHHHHHHHhh
Q psy14676 1434 RLQESLK--SNSALMRTTVLTAVKFTIS 1459 (1827)
Q Consensus 1434 ~L~~~l~--~~~~~~R~t~l~Alk~~~~ 1459 (1827)
.|.+.+. +.+..+|.-++.|+-.+-+
T Consensus 517 ~l~~v~~~~~s~~~tk~yal~Al~KLSs 544 (866)
T KOG1062|consen 517 KLEKVLMSHSSDSTTKGYALTALLKLSS 544 (866)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 8888775 3467788888888776654
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0002 Score=93.59 Aligned_cols=289 Identities=15% Similarity=0.122 Sum_probs=183.4
Q ss_pred hhhhhhhcch-hHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhh
Q psy14676 1219 PILGSFLRKN-QRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPA 1297 (1827)
Q Consensus 1219 ~~L~~~Lrk~-~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~ 1297 (1827)
+.+.+-+|.- .+..|.++++.|..|.....+ ..-++.++|.+..++.|++..||..|++.|+.+...-.
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr------- 494 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVR------- 494 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhcc-------
Confidence 3444444422 255778888888877665332 23678899999999999999999999999998775211
Q ss_pred HHhhhhhcccccCCCchhhHHHHHHHhcCC-CCHhHHHHHHHHHhhhhhhhhhhhHHHHHH--h--hhcCchhhHHHHHH
Q psy14676 1298 AASILPQIGRHTDLTSVADLKQVILNAFTP-TSEEVKSAASYTLGSIAVGNLQQYVPFVLK--E--IENQPKRQYLLLHS 1372 (1827)
Q Consensus 1298 i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~-~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~--~--i~~~~~~q~~~l~a 1372 (1827)
.+-+.--.-+.+-++|.+-....| ...-||.+-|..|+.++..... |+-.-.+ . +.+.+..+ .
T Consensus 495 ------~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r-Fle~~q~~~~~g~~n~~nse-----t 562 (1431)
T KOG1240|consen 495 ------DIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR-FLELTQELRQAGMLNDPNSE-----T 562 (1431)
T ss_pred ------CCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH-HHHHHHHHHhcccccCcccc-----c
Confidence 111100011334577877777777 4556999889888887654321 2111111 1 11211111 0
Q ss_pred HHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCC-----cchHHHHHhhhcCCHHHH
Q psy14676 1373 LKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPS-----NLLPRLQESLKSNSALMR 1447 (1827)
Q Consensus 1373 L~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~-----~~lP~L~~~l~~~~~~~R 1447 (1827)
..| . -+..++......+-..+...+.+++.-||..--+.|+.|+..+.+ .++++|..+|++.+...|
T Consensus 563 ~~~--~------~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR 634 (1431)
T KOG1240|consen 563 APE--Q------NYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLR 634 (1431)
T ss_pred ccc--c------ccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHH
Confidence 000 0 001111111222222223333455567899888999999998863 799999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhh--
Q psy14676 1448 TTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNK-- 1525 (1827)
Q Consensus 1448 ~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~-- 1525 (1827)
.+-...|-++..-.+.. -+.+-++|.+.+.+.|+++.|..+|..|+..|++.
T Consensus 635 ~aFfdsI~gvsi~VG~r--------------------------s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l 688 (1431)
T KOG1240|consen 635 GAFFDSIVGVSIFVGWR--------------------------SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL 688 (1431)
T ss_pred HHHHhhccceEEEEeee--------------------------eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc
Confidence 88776666543322211 02234679999999999999999999999999964
Q ss_pred hhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhhhhcc
Q psy14676 1526 VKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRN 1571 (1827)
Q Consensus 1526 l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~~ 1571 (1827)
+.+-.+.++++..+--+...|. =+||.++..+-++++.
T Consensus 689 l~K~~v~~i~~~v~PlL~hPN~--------WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 689 LRKPAVKDILQDVLPLLCHPNL--------WIRRAVLGIIAAIARQ 726 (1431)
T ss_pred cchHHHHHHHHhhhhheeCchH--------HHHHHHHHHHHHHHhh
Confidence 4455666666655544555444 7999999999888874
|
|
| >KOG4224|consensus | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00055 Score=78.96 Aligned_cols=336 Identities=14% Similarity=0.115 Sum_probs=195.2
Q ss_pred chHHHHHHhccCChhhHHHHHHHHHHHHHhcc--ccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHH
Q psy14676 1035 LLPRLQESLKSNSALMRTTHQSNQTFNVIIQR--NDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQF 1112 (1827)
Q Consensus 1035 llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~--~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~l 1112 (1827)
+.|..+ .-++.+-..|..+..+|..+..... ..+.. .--+|.++.+++..++.++--+..+++.+
T Consensus 169 L~pltr-LakskdirvqrnatgaLlnmThs~EnRr~LV~------------aG~lpvLVsll~s~d~dvqyycttaisnI 235 (550)
T KOG4224|consen 169 LEPLTR-LAKSKDIRVQRNATGALLNMTHSRENRRVLVH------------AGGLPVLVSLLKSGDLDVQYYCTTAISNI 235 (550)
T ss_pred hhhhHh-hcccchhhHHHHHHHHHHHhhhhhhhhhhhhc------------cCCchhhhhhhccCChhHHHHHHHHhhhh
Confidence 444443 5577777778777777765433221 11111 12467788888888888887777777766
Q ss_pred HHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh--
Q psy14676 1113 VKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT-- 1190 (1827)
Q Consensus 1113 v~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t-- 1190 (1827)
.-.-+. + ..+..-=+++++.+++-+. |.++.||-.|--+++.+.+.+.+...-.-..-+|.+++.+++...
T Consensus 236 aVd~~~-R----k~Laqaep~lv~~Lv~Lmd--~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~pl 308 (550)
T KOG4224|consen 236 AVDRRA-R----KILAQAEPKLVPALVDLMD--DGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPL 308 (550)
T ss_pred hhhHHH-H----HHHHhcccchHHHHHHHHh--CCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhH
Confidence 532100 0 0000011234455555554 778899999999999999877654433344567888888877665
Q ss_pred HHHHHHHHHHHhcCCCccccchhhh-hhHhhhhhhhcch-hHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcC
Q psy14676 1191 RLTTVKALTKIAASPLRIDLRPILT-DGIPILGSFLRKN-QRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVS 1268 (1827)
Q Consensus 1191 R~~av~al~~ia~~~~~~dl~p~~~-~~l~~L~~~Lrk~-~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~ 1268 (1827)
=++.+.++..|+-++++. .++.. ..+..|.++||-. +.+.+-.+...|..|+.++......-.-.+.++-+..++.
T Consensus 309 ilasVaCIrnisihplNe--~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~l 386 (550)
T KOG4224|consen 309 ILASVACIRNISIHPLNE--VLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLL 386 (550)
T ss_pred HHHHHHHHhhcccccCcc--cceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHh
Confidence 355566666666655432 22322 2345577777744 4568889999999988754332111011135566677888
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhh
Q psy14676 1269 ESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNL 1348 (1827)
Q Consensus 1269 d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l 1348 (1827)
|....++.-.-.+++.++-..-. +.. +. -..++|+++....+.++|||.+||.||++.+. +.
T Consensus 387 D~pvsvqseisac~a~Lal~d~~---------------k~~-ll-d~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss-~v 448 (550)
T KOG4224|consen 387 DGPVSVQSEISACIAQLALNDND---------------KEA-LL-DSGIIPILIPWTGSESEEVRGNAAAALINLSS-DV 448 (550)
T ss_pred cCChhHHHHHHHHHHHHHhcccc---------------HHH-Hh-hcCCcceeecccCccchhhcccHHHHHHhhhh-hh
Confidence 88877777665566555442111 100 00 12477888888899999999999999999764 22
Q ss_pred hhhHHHHHHhhhcCchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCC
Q psy14676 1349 QQYVPFVLKEIENQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDP 1428 (1827)
Q Consensus 1349 ~~~LP~Il~~i~~~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p 1428 (1827)
..|-- +.|.+.+. . ..|...|.+.+.+.+-..|..+..++-.|..-+-
T Consensus 449 ~~Yar-------------------viEawd~P------~-------~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 449 EHYAR-------------------VIEAWDHP------V-------QGIQGRLARFLASHELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred HHHHH-------------------HHHHhcCc------c-------hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence 22221 22222211 0 1222333333344555567777777777765332
Q ss_pred CcchHHHHHhhhcCCHHH
Q psy14676 1429 SNLLPRLQESLKSNSALM 1446 (1827)
Q Consensus 1429 ~~~lP~L~~~l~~~~~~~ 1446 (1827)
|.+..+.++.+..+
T Consensus 497 ----~~~~~~i~~~ddii 510 (550)
T KOG4224|consen 497 ----LPLTAFIQSSDDII 510 (550)
T ss_pred ----ccHHHHHhCchhHH
Confidence 45566666665544
|
|
| >KOG1059|consensus | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0099 Score=74.69 Aligned_cols=338 Identities=12% Similarity=0.135 Sum_probs=197.7
Q ss_pred HHHHHhhhcccCC-CCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCc
Q psy14676 1020 VAECLGKLTLIDP-SNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNF 1098 (1827)
Q Consensus 1020 a~e~Lg~L~~~~~-~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~ 1098 (1827)
|..+|..++...+ ..+-+.+...|.++.+.+|.-|+.++-.+.-.-++. +..-.|.+..-+.|++
T Consensus 129 AL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA--------------lr~~FprL~EkLeDpD 194 (877)
T KOG1059|consen 129 ALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA--------------LRPCFPRLVEKLEDPD 194 (877)
T ss_pred eecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh--------------HhhhHHHHHHhccCCC
Confidence 4455555544433 457888888899999999888877776444444444 5566788889999999
Q ss_pred hhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhh--hhhhh-h
Q psy14676 1099 YKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDY--LKSEL-P 1175 (1827)
Q Consensus 1099 ~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~--l~~~l-~ 1175 (1827)
|.|.++|..++.+|++- .+..+.++.+.+|. -+...+.+. .+-.+++.+|.. +.|.+ .
T Consensus 195 p~V~SAAV~VICELArK-------nPknyL~LAP~ffk----llttSsNNW--------mLIKiiKLF~aLtplEPRLgK 255 (877)
T KOG1059|consen 195 PSVVSAAVSVICELARK-------NPQNYLQLAPLFYK----LLVTSSNNW--------VLIKLLKLFAALTPLEPRLGK 255 (877)
T ss_pred chHHHHHHHHHHHHHhh-------CCcccccccHHHHH----HHhccCCCe--------ehHHHHHHHhhccccCchhhh
Confidence 99999999999999963 22334444444444 233233333 344555555542 33544 3
Q ss_pred hhHHHHHHhhhhhhhHHHHHHHHHHHhcCC---CccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcC
Q psy14676 1176 VCLPILLDRLRNEITRLTTVKALTKIAASP---LRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAIS 1252 (1827)
Q Consensus 1176 ~lL~~Ll~~L~~e~tR~~av~al~~ia~~~---~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~ 1252 (1827)
.++|.|.+.+++...-.---.++-++++.. +..|-+.-+.-+++-|..|+.+++..+|.-.+-|++.+++.++..+.
T Consensus 256 KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq 335 (877)
T KOG1059|consen 256 KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ 335 (877)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH
Confidence 578888877776554333333444444321 11122334455778888899999999999999999999987665443
Q ss_pred hHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCC-Hh
Q psy14676 1253 TEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTS-EE 1331 (1827)
Q Consensus 1253 ~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s-~e 1331 (1827)
.. . .-+.+.+.|.|..+|--++..|-.++... .+..+...+..++.... ..
T Consensus 336 a~-k----dlIlrcL~DkD~SIRlrALdLl~gmVskk-----------------------Nl~eIVk~LM~~~~~ae~t~ 387 (877)
T KOG1059|consen 336 AH-K----DLILRCLDDKDESIRLRALDLLYGMVSKK-----------------------NLMEIVKTLMKHVEKAEGTN 387 (877)
T ss_pred Hh-H----HHHHHHhccCCchhHHHHHHHHHHHhhhh-----------------------hHHHHHHHHHHHHHhccchh
Confidence 21 1 12256788999999999999887766521 11223333333333222 23
Q ss_pred HHHHHHHHHhhh-------hhhhhhhhHHHHHHhhhcCchhh-HHHHHHHHHHHhhccccccchhhhhchHH-HHHHHHh
Q psy14676 1332 VKSAASYTLGSI-------AVGNLQQYVPFVLKEIENQPKRQ-YLLLHSLKEIISWQSTSTSGVAQLQQFVP-AIWAQLF 1402 (1827)
Q Consensus 1332 Vr~aAa~aLG~i-------~~~~l~~~LP~Il~~i~~~~~~q-~~~l~aL~Eii~~~~~s~~g~~~L~~~~~-~i~~~L~ 1402 (1827)
-|-.-...+=.+ .+.++.=|+..+++..+=.+... ..+-+-+..+..+ ...+++|.- +.|..+.
T Consensus 388 yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iR-------V~~iR~fsV~~m~~Ll~ 460 (877)
T KOG1059|consen 388 YRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIR-------VPSIRPFSVSQMSALLD 460 (877)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHhee-------chhhhHhHHHHHHHHHh
Confidence 343333332222 23567778888887764322222 1222333333221 345777554 4444444
Q ss_pred hh-----hc-CC-chhHHHHHHHHHHHhhc
Q psy14676 1403 LH-----CE-CQ-EEGTRNVVAECLGKLTL 1425 (1827)
Q Consensus 1403 ~~-----~~-~~-~e~vR~~aAecLGkL~~ 1425 (1827)
.. +. +. --++-.+||-|+|..+.
T Consensus 461 ~~~~~~s~q~n~~l~eVL~AaaWi~GEyse 490 (877)
T KOG1059|consen 461 DPLLAGSAQINSQLCEVLYAAAWILGEYSE 490 (877)
T ss_pred chhhccchhhccchhHHHHHHHHHHHHHHH
Confidence 22 11 11 12355568999999886
|
|
| >KOG1967|consensus | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.13 Score=67.12 Aligned_cols=229 Identities=16% Similarity=0.197 Sum_probs=133.0
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhh--hhHHHHHHHHHHHhhhcHHHH
Q psy14676 776 LHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSC--NLQLTIVALSHLVMSCNLQLY 853 (1827)
Q Consensus 776 ~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~--~r~~Ai~aL~~l~~~~~~~~~ 853 (1827)
.+.+|+..++----++.--.-+++.+...+++..+++ +.+++-.-.+|+-++.-+ .+++.=.|-.. ..--+.+|
T Consensus 790 ls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~r--iLykQRfF 865 (1030)
T KOG1967|consen 790 LSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPR--ILYKQRFF 865 (1030)
T ss_pred hhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchh--HHHHHHHH
Confidence 3445554433322222222233455666788888876 333332222444222111 11111111100 13346688
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccc-cchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCcc
Q psy14676 854 TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGH-RFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEI 932 (1827)
Q Consensus 854 ~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~-~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i 932 (1827)
..+.+.+++.+.+ ....+|-.++.++..+-...|. .+.|.++.++|.+++++.=.|..+|..+++.+..++...++-+
T Consensus 866 ~~ivP~l~~~~~t-~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 866 CDIVPILVSKFET-APGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HhhHHHHHHHhcc-CCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 8888888888773 3345677777777766665554 5889999999999999988888888777666655444333333
Q ss_pred ccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhcc
Q psy14676 933 TPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQ 1012 (1827)
Q Consensus 933 ~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~ 1012 (1827)
..|++.
T Consensus 945 t~~~~T-------------------------------------------------------------------------- 950 (1030)
T KOG1967|consen 945 TEHLST-------------------------------------------------------------------------- 950 (1030)
T ss_pred hHHHhH--------------------------------------------------------------------------
Confidence 333221
Q ss_pred ccchhhHHHHHHhhhcccCCCCchHHHHHHhccCC---hhhHHHHHHHHHHHHH-hccccccccccchhhhhhhhhhhhH
Q psy14676 1013 EEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNS---ALMRTTHQSNQTFNVI-IQRNDIHNHNEETSFIYSFYYFLLS 1088 (1827)
Q Consensus 1013 e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~---~~~R~~a~~~L~~l~~-~~~~~l~~~~~~~~~~~~~l~~Lip 1088 (1827)
++|.+.-.-++.+ ..+|+.|++.|+.+.. .....+.+| -+..+.
T Consensus 951 ----------------------lvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~f----------r~~Vl~ 998 (1030)
T KOG1967|consen 951 ----------------------LVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSF----------RPLVLR 998 (1030)
T ss_pred ----------------------HHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccc----------cHHHHH
Confidence 2222222222222 3456666666665555 233344444 899999
Q ss_pred HHHHhhcCCchhhHHHHHHHHHHHHHH
Q psy14676 1089 PVIASVGDNFYKITAEALLVLQQFVKV 1115 (1827)
Q Consensus 1089 ~l~~~l~D~~~~V~~eAl~~l~~lv~~ 1115 (1827)
.+.+.+.|+-..||.||.++=+.|...
T Consensus 999 al~k~LdDkKRlVR~eAv~tR~~W~~l 1025 (1030)
T KOG1967|consen 999 ALIKILDDKKRLVRKEAVDTRQNWYML 1025 (1030)
T ss_pred HhhhccCcHHHHHHHHHHHHhhhhhhc
Confidence 999999999999999999887777643
|
|
| >KOG1020|consensus | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.18 Score=68.73 Aligned_cols=204 Identities=14% Similarity=0.140 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHhccCC-CCCCCCcchhHHHHHHHHH---HHHhhcCCCHHHHHHHHHHHHHHHHHhhh-hhhhhhhhh
Q psy14676 1103 AEALLVLQQFVKVIRPLT-SPSSYDFAPFTSDIYQCTL---VRLKAADIDQEVKERAISCMGQIICNLGD-YLKSELPVC 1177 (1827)
Q Consensus 1103 ~eAl~~l~~lv~~l~~~~-~~~~~~~~~~l~~l~~~ll---~~L~~~D~d~eVre~Ai~alg~l~~~~g~-~l~~~l~~l 1177 (1827)
...+-++|.|.+...-+. ...+..+..+...+.+.++ ..+. .+.+.++|..|+.+||.+...-.. ...+++..+
T Consensus 1190 ~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~-k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nl 1268 (1692)
T KOG1020|consen 1190 QRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFS-KDKDGELRRKALINLGFICIQHPSLFTSREVLNL 1268 (1692)
T ss_pred HHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHH
Confidence 345667777777543221 1111111111223333332 2222 356799999999999998766544 344566665
Q ss_pred HHHHHHhhhhhhh-HHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCC----cC
Q psy14676 1178 LPILLDRLRNEIT-RLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSA----IS 1252 (1827)
Q Consensus 1178 L~~Ll~~L~~e~t-R~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~----l~ 1252 (1827)
+..++..-.+... +..+.+.+....- +.=..+.. .+.+| .+.+-..-++.+....... ..
T Consensus 1269 y~~ila~~n~~~~~ki~~l~n~~~yL~------------eee~~l~~--~~~~w-~~~~k~edlkem~~v~sg~~s~~~~ 1333 (1692)
T KOG1020|consen 1269 YDEILADDNSDIKSKIQLLQNLELYLL------------EEEKKLRN--KGKNW-TKSNKSEDLKEMLDVSSGMGSSDGV 1333 (1692)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHH------------HHHHHHHh--cccch-hhhhhHHHHHhhcccccccccccch
Confidence 5555544444433 6666665544321 11111110 11112 2233344455554432221 11
Q ss_pred hHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhH
Q psy14676 1253 TEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEV 1332 (1827)
Q Consensus 1253 ~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eV 1332 (1827)
...++..++.+....-+.|.++|..++.++.-+... |+......+|.++....|+.++.
T Consensus 1334 ~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~Q---------------------GLVhP~~cvPtLIAL~Tdp~~~~ 1392 (1692)
T KOG1020|consen 1334 SAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQ---------------------GLVHPVHCVPTLIALETDPSQAI 1392 (1692)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHc---------------------cCCCccchhhhheeecCChHHHH
Confidence 235666677777777899999999999988766541 11111346788899999999999
Q ss_pred HHHHHHHHhhh
Q psy14676 1333 KSAASYTLGSI 1343 (1827)
Q Consensus 1333 r~aAa~aLG~i 1343 (1827)
|.-|-..|-++
T Consensus 1393 r~~Ad~LL~ei 1403 (1692)
T KOG1020|consen 1393 RHVADELLKEI 1403 (1692)
T ss_pred HHHHHHHHHHH
Confidence 99988877765
|
|
| >KOG4535|consensus | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.025 Score=67.94 Aligned_cols=99 Identities=17% Similarity=0.218 Sum_probs=61.3
Q ss_pred chhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhh---cCCCHHHHHHHHHHHHHHHHHhhhhhh--h
Q psy14676 1098 FYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKA---ADIDQEVKERAISCMGQIICNLGDYLK--S 1172 (1827)
Q Consensus 1098 ~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~---~D~d~eVre~Ai~alg~l~~~~g~~l~--~ 1172 (1827)
.+||++.|.++++.+.+.+.|... +-+..+++.-+.++.. ......||=.|+.++|.+.++-.-.+. +
T Consensus 497 ~dkV~~navraLgnllQvlq~i~~-------~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~ 569 (728)
T KOG4535|consen 497 KDKVKSNAVRALGNLLQFLQPIEK-------PTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAP 569 (728)
T ss_pred hhhhhhHHHHHHhhHHHHHHHhhh-------ccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCC
Confidence 388998777777777766654211 2233344433333331 123567999999999999988654344 3
Q ss_pred hhhhhHHHHHHhhhhh---hhHHHHHHHHHHHhc
Q psy14676 1173 ELPVCLPILLDRLRNE---ITRLTTVKALTKIAA 1203 (1827)
Q Consensus 1173 ~l~~lL~~Ll~~L~~e---~tR~~av~al~~ia~ 1203 (1827)
.-+.++++|...+.+- -.|..|+.++...+.
T Consensus 570 wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 570 WASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred chHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 4566777777666543 348888877766553
|
|
| >KOG1059|consensus | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0054 Score=76.91 Aligned_cols=281 Identities=11% Similarity=0.124 Sum_probs=163.1
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHH
Q psy14676 837 TIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREF 916 (1827)
Q Consensus 837 Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~ 916 (1827)
|+.||+. +...++-+++-+.+.. +.++..|-+|+.++.++-.++..+|+.+.|.++++ ..-|.|.|+.|..+
T Consensus 129 AL~GLS~---fvTpdLARDLa~Dv~t-LL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL----~EkLeDpDp~V~SA 200 (877)
T KOG1059|consen 129 ALSGLSC---IVTPDLARDLADDVFT-LLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRL----VEKLEDPDPSVVSA 200 (877)
T ss_pred eeccccc---ccCchhhHHHHHHHHH-HHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHH----HHhccCCCchHHHH
Confidence 4445544 4556666666555444 44566789999999999999999999888876554 55788999999888
Q ss_pred HHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChHh---HhhhhhcccchhhHhhhhcccccchhhh
Q psy14676 917 CLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEE---VKSAASYTLGSIAEIISWQSTSTSGVAQ 993 (1827)
Q Consensus 917 al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~---~r~~~~~~lg~~~~~i~Wk~~~~~~~~~ 993 (1827)
|...+.-+...-|+...|+-| ++|..+.+.+.+ +|-.. ....
T Consensus 201 AV~VICELArKnPknyL~LAP----------------~ffkllttSsNNWmLIKiiK-------------------LF~a 245 (877)
T KOG1059|consen 201 AVSVICELARKNPQNYLQLAP----------------LFYKLLVTSSNNWVLIKLLK-------------------LFAA 245 (877)
T ss_pred HHHHHHHHHhhCCcccccccH----------------HHHHHHhccCCCeehHHHHH-------------------HHhh
Confidence 877666666666665555444 334444321111 11000 1122
Q ss_pred hhhhHHHHHHHHHhhhhc--cccchhhHHHHHHhhhccc-----CCCC------chHHHHHHhccCChhhHHHHHHHHHH
Q psy14676 994 LQQFVPAIWAQLFLHCEC--QEEGTRNVVAECLGKLTLI-----DPSN------LLPRLQESLKSNSALMRTTHQSNQTF 1060 (1827)
Q Consensus 994 l~~~~p~ll~~L~~~l~~--~e~~vR~~a~e~Lg~L~~~-----~~~~------llP~L~~~L~s~~~~~R~~a~~~L~~ 1060 (1827)
|.|+-|.+-+-|+.-+.+ +++.-.....||+.++... .++. -+..|...+.+++...|--.+.+++-
T Consensus 246 LtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~K 325 (877)
T KOG1059|consen 246 LTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSK 325 (877)
T ss_pred ccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHH
Confidence 333333332222211111 1222233457888887665 2222 23455555688889999999999985
Q ss_pred HHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHH
Q psy14676 1061 NVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLV 1140 (1827)
Q Consensus 1061 l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~ 1140 (1827)
+....+.. +..--..|+.|+.|.+..||..|+..+-.+|.- .. +..|...++.
T Consensus 326 I~ktHp~~--------------Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk---------kN----l~eIVk~LM~ 378 (877)
T KOG1059|consen 326 ILKTHPKA--------------VQAHKDLILRCLDDKDESIRLRALDLLYGMVSK---------KN----LMEIVKTLMK 378 (877)
T ss_pred HhhhCHHH--------------HHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh---------hh----HHHHHHHHHH
Confidence 54443333 444567789999999999999999988887742 22 3333333443
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhh
Q psy14676 1141 RLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNE 1188 (1827)
Q Consensus 1141 ~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e 1188 (1827)
.+...+. ...|..-+.-+-.+.+...+..-..+..++.++++..+=+
T Consensus 379 ~~~~ae~-t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~ 425 (877)
T KOG1059|consen 379 HVEKAEG-TNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLE 425 (877)
T ss_pred HHHhccc-hhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhcc
Confidence 4432232 2344444443333333333433345666777776665433
|
|
| >KOG4535|consensus | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0011 Score=78.87 Aligned_cols=214 Identities=15% Similarity=0.160 Sum_probs=122.6
Q ss_pred hhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCc-hhhHHHHHHHHHHHHHHhccCCCCCCCC
Q psy14676 1048 ALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNF-YKITAEALLVLQQFVKVIRPLTSPSSYD 1126 (1827)
Q Consensus 1048 ~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~-~~V~~eAl~~l~~lv~~l~~~~~~~~~~ 1126 (1827)
++.+.+.|..+..+.......|-+- -.+..+.++.++.|.. .-++++|+++.+.++ +.| +...
T Consensus 363 ~Tl~~s~Cdals~i~~~~f~~lpn~----------~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyV--LHp----~lr~ 426 (728)
T KOG4535|consen 363 PTLQASACDALSSILPEAFSNLPND----------RQTLCITFLLGCNDSKNRLVKAAASRALGVYV--LHP----CLRQ 426 (728)
T ss_pred CCchhHHHHHHhhcCchhhcCCCCc----------chhhhHHHHhcccchHHHHHHHHHHhhceeEE--ecc----chhh
Confidence 3445555655554444333333332 3467788888887654 446788888877665 333 2223
Q ss_pred cchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhh---hhhhhHHHHHHhhh---------hhhhHHHH
Q psy14676 1127 FAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKS---ELPVCLPILLDRLR---------NEITRLTT 1194 (1827)
Q Consensus 1127 ~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~---~l~~lL~~Ll~~L~---------~e~tR~~a 1194 (1827)
...++...+..++..+. |....+|+.|..++|.+-..+-+.... .-..+...++.++- +.-.|-.|
T Consensus 427 d~~fv~~aa~~il~sl~--d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~na 504 (728)
T KOG4535|consen 427 DVIFVADAANAILMSLE--DKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNA 504 (728)
T ss_pred hHHHHHHHHHHHHHHhh--hHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH
Confidence 34678888888888887 777889999999999998777443322 23344444444431 12237889
Q ss_pred HHHHHHHhcCCC---ccccchhhhhhHhhhh-hhhcchhHHHHHHHHHHHHHHHHhCCCCcCh-HhHHHHHHHhhhhcCC
Q psy14676 1195 VKALTKIAASPL---RIDLRPILTDGIPILG-SFLRKNQRALKLSTLLLLDTLLVNYPSAIST-EMLNKVTVELAPLVSE 1269 (1827)
Q Consensus 1195 v~al~~ia~~~~---~~dl~p~~~~~l~~L~-~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~-~~~~~ll~~L~~ll~d 1269 (1827)
++++|.+..... +..+.......+..+. .-.-+..-.+|-++--+++.|.++..-.+.. .|...+++.|..++.+
T Consensus 505 vraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~ 584 (728)
T KOG4535|consen 505 VRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTS 584 (728)
T ss_pred HHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHH
Confidence 999997654210 1111111111111111 1122444568888889999999875544432 4555666666555543
Q ss_pred -CChhHHHHHH
Q psy14676 1270 -SDLHIAQLTL 1279 (1827)
Q Consensus 1270 -~D~~l~~~al 1279 (1827)
++.-+|-.+.
T Consensus 585 ~~NFKVRi~AA 595 (728)
T KOG4535|consen 585 CKNFKVRIRAA 595 (728)
T ss_pred hccceEeehhh
Confidence 3444444333
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.6e-05 Score=75.56 Aligned_cols=94 Identities=23% Similarity=0.217 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHH
Q psy14676 362 TRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVR 441 (1827)
Q Consensus 362 vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr 441 (1827)
.|.+++-.+...+.-+|....+|++.|+|.++.++. |..||||
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~-------------------------------------D~d~rVR 44 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFD-------------------------------------DQDSRVR 44 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcC-------------------------------------CCcHHHH
Confidence 377888888888888888899999999999999983 4579999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHH
Q psy14676 442 RAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALL 493 (1827)
Q Consensus 442 ~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~ 493 (1827)
-.|++++.++++..+..+.+||..+.+.|...+.|.+++||.+| +.+-.++
T Consensus 45 y~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 45 YYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 99999999999999988888999999999999999999999998 4555554
|
|
| >KOG1820|consensus | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00065 Score=89.70 Aligned_cols=200 Identities=20% Similarity=0.300 Sum_probs=139.5
Q ss_pred hhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccc-cCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCC
Q psy14676 342 TQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCL-APSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDG 420 (1827)
Q Consensus 342 ~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l-~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~ 420 (1827)
..++.+.+.+...+.+++++-|..++.-+......-+... ..+..-+...+.-.+
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~------------------------ 304 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRL------------------------ 304 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhc------------------------
Confidence 4678888899999999999999877766555554444222 344444444444443
Q ss_pred CCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCC
Q psy14676 421 EDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFS 500 (1827)
Q Consensus 421 ~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~ 500 (1827)
-|.+..+..-|+.+|..+++.++..|.+|.....|.++.++++.+..+|+.+...+...+...+
T Consensus 305 -------------kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~--- 368 (815)
T KOG1820|consen 305 -------------KDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP--- 368 (815)
T ss_pred -------------cCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc---
Confidence 2456778888999999999999988999999999999999999999999999999888887433
Q ss_pred CCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhcccc
Q psy14676 501 PLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKL 580 (1827)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~ 580 (1827)
+ ..++..+.+.++..+.+.++.|...+..++...+| ...
T Consensus 369 -l----------------------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~------------------~~~ 407 (815)
T KOG1820|consen 369 -L----------------------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP------------------KTV 407 (815)
T ss_pred -H----------------------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC------------------cCc
Confidence 1 12233333334444333344433333222111111 001
Q ss_pred chhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhh
Q psy14676 581 DDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIA 622 (1827)
Q Consensus 581 d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~ 622 (1827)
-..+...+++.+..+.+|.+.+||..|..+++.+.+.+|+.+
T Consensus 408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~ 449 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEV 449 (815)
T ss_pred chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHH
Confidence 113567789999999999999999999999999999999843
|
|
| >KOG2259|consensus | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00082 Score=83.15 Aligned_cols=280 Identities=15% Similarity=0.135 Sum_probs=154.3
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc---hhh--
Q psy14676 79 VILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG---HRF-- 153 (1827)
Q Consensus 79 ~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~---~~~-- 153 (1827)
.....+.....+.+..||++|+.++-.+.+.. ++-........+.++ +....+|..+++.+.-.+.-.| ++.
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL~~~~Y~~A~~~ls-D~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGF--KLSKACYSRAVKHLS-DDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcccc--cccHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 45555666677888999999999999988843 222223344444444 4567899999999998887663 122
Q ss_pred -HHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchH-HHHHHHHH--HhccCCCCCcccccccCCCCCC
Q psy14676 154 -AEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQ-SITELCLT--YITYDPNYNYEDEEEGLGGEGG 229 (1827)
Q Consensus 154 -~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~-~ii~~ll~--~l~~dpn~~~~ddd~~~~~~~~ 229 (1827)
..+.+..+--+-..+.|-.=.+|-.|..+|+.|-..-.+-+..-++ +++.-+-+ ....-|-- .....+|..+..-
T Consensus 275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~-l~s~GewSsGk~~ 353 (823)
T KOG2259|consen 275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKA-LYSSGEWSSGKEW 353 (823)
T ss_pred hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHH-HHhcCCcccCccc
Confidence 2234444444444455555556655555554443221111111111 01110000 00000100 0001122111000
Q ss_pred CCCCCCcccCCCCCCCC--C----CCC-CCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHH
Q psy14676 230 GEGMDTEEEDGEDEGED--D----NEY-SDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVK 302 (1827)
Q Consensus 230 ~~~~d~~~~d~dde~e~--~----~e~-sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR 302 (1827)
+++...++ + |++.+. . .-| ..-+|.-+.||+||...+..++.++|. |-...+.+|+..|+|.-+.||
T Consensus 354 ~advpsee-~-d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvDMfNDE~~~VR 427 (823)
T KOG2259|consen 354 NADVPSEE-D-DEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG----FAVRALDFLVDMFNDEIEVVR 427 (823)
T ss_pred cccCchhh-c-cccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHhccHHHHHH
Confidence 00000000 0 000000 0 000 122566688999999999999999886 345678889999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCccccc
Q psy14676 303 SDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLA 382 (1827)
Q Consensus 303 ~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~ 382 (1827)
..++.++..+..... .=+.| ++.++..|.|.++++|++.-.+|+...-.--
T Consensus 428 L~ai~aL~~Is~~l~---------------------i~eeq----l~~il~~L~D~s~dvRe~l~elL~~~~~~d~---- 478 (823)
T KOG2259|consen 428 LKAIFALTMISVHLA---------------------IREEQ----LRQILESLEDRSVDVREALRELLKNARVSDL---- 478 (823)
T ss_pred HHHHHHHHHHHHHhe---------------------ecHHH----HHHHHHHHHhcCHHHHHHHHHHHHhcCCCcH----
Confidence 999999988874311 01234 5556777889999999999887764432211
Q ss_pred CchhhHHHHHHHHhh
Q psy14676 383 PSLPALIPDVTSVAE 397 (1827)
Q Consensus 383 ~~l~~Llp~i~~~L~ 397 (1827)
+.+.-.+..+.+.|.
T Consensus 479 ~~i~m~v~~lL~~L~ 493 (823)
T KOG2259|consen 479 ECIDMCVAHLLKNLG 493 (823)
T ss_pred HHHHHHHHHHHHHhh
Confidence 233445555666663
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00012 Score=71.90 Aligned_cols=90 Identities=17% Similarity=0.172 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhh
Q psy14676 260 VRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCL 339 (1827)
Q Consensus 260 VRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1827)
.|+++.-+|.+++.+.+....++++.++|.++..|.|.+|.||..|++++..+++..+ ..
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--------------------~~ 61 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR--------------------GE 61 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--------------------HH
Confidence 4899999999999999988999999999999999999999999999999999986532 34
Q ss_pred HHhhhHHHHHHHHHHhccCCHhHHHHHHHH
Q psy14676 340 LSTQVPSLVKALQCQLREKSIRTRQDCLAL 369 (1827)
Q Consensus 340 l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~l 369 (1827)
+-++++.|...+.+.+.|.++.||.+|..+
T Consensus 62 ~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~L 91 (97)
T PF12755_consen 62 ILPYFNEIFDALCKLSADPDENVRSAAELL 91 (97)
T ss_pred HHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Confidence 566899999999999999999999988643
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.14 Score=62.92 Aligned_cols=280 Identities=19% Similarity=0.299 Sum_probs=164.4
Q ss_pred hhhhHHHHHHhhhh--hhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCc
Q psy14676 1174 LPVCLPILLDRLRN--EITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAI 1251 (1827)
Q Consensus 1174 l~~lL~~Ll~~L~~--e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l 1251 (1827)
+..+-|.|-.-+++ |..-++++|++..++..... +.++...+..|..+|....-.+|-++++.|..+...++..+
T Consensus 262 ~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~---~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv 338 (898)
T COG5240 262 LLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVG---SQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV 338 (898)
T ss_pred HHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee
Confidence 44556666666766 77789999998887754321 34667788889999988888899999999999999887764
Q ss_pred ChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHh
Q psy14676 1252 STEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEE 1331 (1827)
Q Consensus 1252 ~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~e 1331 (1827)
.. -=+++-.+++|.++.+..-|+..| .+. |.. .++..++..+.....|-|++
T Consensus 339 ~v-----cN~evEsLIsd~Nr~IstyAITtL---LKT-----------------Gt~---e~idrLv~~I~sfvhD~SD~ 390 (898)
T COG5240 339 SV-----CNKEVESLISDENRTISTYAITTL---LKT-----------------GTE---ETIDRLVNLIPSFVHDMSDG 390 (898)
T ss_pred ee-----cChhHHHHhhcccccchHHHHHHH---HHc-----------------Cch---hhHHHHHHHHHHHHHhhccC
Confidence 32 113456788899888777665433 321 110 12344555555555565666
Q ss_pred HHHHHHHHHhhhhhhhh---hhhHHHHHHhhhcCc--hhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhc
Q psy14676 1332 VKSAASYTLGSIAVGNL---QQYVPFVLKEIENQP--KRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCE 1406 (1827)
Q Consensus 1332 Vr~aAa~aLG~i~~~~l---~~~LP~Il~~i~~~~--~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~ 1406 (1827)
.|.-+..|+-.++.... ..||.++-+.+.+.+ +-+-.+..+|..++... .+.++..-..+=.+++-|+
T Consensus 391 FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~-------p~skEraLe~LC~fIEDce 463 (898)
T COG5240 391 FKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEND-------PDSKERALEVLCTFIEDCE 463 (898)
T ss_pred ceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhC-------chHHHHHHHHHHHHHhhcc
Confidence 66666666555543221 234444444443322 12222334444444321 0111111111112223222
Q ss_pred CCchhHHHHHHHHHHHhhccC-----CCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhh
Q psy14676 1407 CQEEGTRNVVAECLGKLTLID-----PSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSEL 1481 (1827)
Q Consensus 1407 ~~~e~vR~~aAecLGkL~~~~-----p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l 1481 (1827)
-. ..+-.-||-|..-. |..|+-++-+.+-=++..+|.++++|+..+.-... |+.
T Consensus 464 y~-----~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~---d~~------------- 522 (898)
T COG5240 464 YH-----QITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNIS---DVV------------- 522 (898)
T ss_pred hh-----HHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcc---ccc-------------
Confidence 21 22223355555433 55788888888777888999999999865542221 111
Q ss_pred hhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhh
Q psy14676 1482 QKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPL 1522 (1827)
Q Consensus 1482 ~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L 1522 (1827)
..+.+...+-++++|.|..||..|.-++..+
T Consensus 523 ----------~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 523 ----------SPQSVENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred ----------cHHHHHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 1245667778899999999999888777544
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0016 Score=80.96 Aligned_cols=237 Identities=14% Similarity=0.016 Sum_probs=148.4
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhh--hhhHHHHHHHHHHHhcCCCccccchh
Q psy14676 1136 QCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRN--EITRLTTVKALTKIAASPLRIDLRPI 1213 (1827)
Q Consensus 1136 ~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~--e~tR~~av~al~~ia~~~~~~dl~p~ 1213 (1827)
+.++..+. .|.+.+|+..|..++... + -+..+..+++.+.+ +..|..++++||.+..
T Consensus 57 ~~L~~aL~-~d~~~ev~~~aa~al~~~-----~-----~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~---------- 115 (410)
T TIGR02270 57 ELLVSALA-EADEPGRVACAALALLAQ-----E-----DALDLRSVLAVLQAGPEGLCAGIQAALGWLGG---------- 115 (410)
T ss_pred HHHHHHHh-hCCChhHHHHHHHHHhcc-----C-----ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc----------
Confidence 33444553 366788877766665431 1 12236667777754 4469999999997653
Q ss_pred hhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCcc
Q psy14676 1214 LTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNAL 1293 (1827)
Q Consensus 1214 ~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~ 1293 (1827)
....+.|...+.+.+..+|.+++.+++..- .+ -.+.+.++++|.|..++..++.+|+.+-.
T Consensus 116 -~~a~~~L~~~L~~~~p~vR~aal~al~~r~--------~~----~~~~L~~~L~d~d~~Vra~A~raLG~l~~------ 176 (410)
T TIGR02270 116 -RQAEPWLEPLLAASEPPGRAIGLAALGAHR--------HD----PGPALEAALTHEDALVRAAALRALGELPR------ 176 (410)
T ss_pred -hHHHHHHHHHhcCCChHHHHHHHHHHHhhc--------cC----hHHHHHHHhcCCCHHHHHHHHHHHHhhcc------
Confidence 445677788888888899999998887511 11 12345667789999999998888765432
Q ss_pred chhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhcCchhhHHHHHHH
Q psy14676 1294 VEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIENQPKRQYLLLHSL 1373 (1827)
Q Consensus 1294 ~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~~~~~q~~~l~aL 1373 (1827)
....+.+...+.+.+++||.+|+.+++.+|... -++.+.......+..+..-+
T Consensus 177 ---------------------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~---A~~~l~~~~~~~g~~~~~~l--- 229 (410)
T TIGR02270 177 ---------------------RLSESTLRLYLRDSDPEVRFAALEAGLLAGSRL---AWGVCRRFQVLEGGPHRQRL--- 229 (410)
T ss_pred ---------------------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCCHh---HHHHHHHHHhccCccHHHHH---
Confidence 234455667899999999999999999987632 22333332222111222211
Q ss_pred HHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHHH
Q psy14676 1374 KEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTA 1453 (1827)
Q Consensus 1374 ~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~A 1453 (1827)
..++... |. +.++..|...+.+ +.+|..++.++|++.. ...+|.|.+.+.++. .|..+-.|
T Consensus 230 ~~~lal~-----~~-------~~a~~~L~~ll~d--~~vr~~a~~AlG~lg~---p~av~~L~~~l~d~~--~aR~A~eA 290 (410)
T TIGR02270 230 LVLLAVA-----GG-------PDAQAWLRELLQA--AATRREALRAVGLVGD---VEAAPWCLEAMREPP--WARLAGEA 290 (410)
T ss_pred HHHHHhC-----Cc-------hhHHHHHHHHhcC--hhhHHHHHHHHHHcCC---cchHHHHHHHhcCcH--HHHHHHHH
Confidence 1122110 11 2334444443322 3489999999998764 346688888886543 77777888
Q ss_pred HHHHh
Q psy14676 1454 VKFTI 1458 (1827)
Q Consensus 1454 lk~~~ 1458 (1827)
++.+.
T Consensus 291 ~~~It 295 (410)
T TIGR02270 291 FSLIT 295 (410)
T ss_pred HHHhh
Confidence 87765
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG1992|consensus | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.28 Score=63.23 Aligned_cols=268 Identities=16% Similarity=0.188 Sum_probs=136.8
Q ss_pred hhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCC--CCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy14676 1083 YYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLT--SPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMG 1160 (1827)
Q Consensus 1083 l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~--~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg 1160 (1827)
+-.++|.++..+..+.+-|-+=|..+++.+..+=.+.. -.+++++.||+..++..++..++- +. ..--+.-..|+-
T Consensus 496 lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~-p~-~~EneylmKaIm 573 (960)
T KOG1992|consen 496 LMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSL-PG-KAENEYLMKAIM 573 (960)
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccC-Cc-ccccHHHHHHHH
Confidence 44555555555555555555555555555554322100 113567888999888888877652 22 244566677777
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHH
Q psy14676 1161 QIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLL 1240 (1827)
Q Consensus 1161 ~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL 1240 (1827)
.++....+...|+.+.+++.|.+.+ ..++..+.+..+..|+=+.+-.+....++++.
T Consensus 574 Rii~i~~~~i~p~~~~~l~~Lteiv-------------~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~---------- 630 (960)
T KOG1992|consen 574 RIISILQSAIIPHAPELLRQLTEIV-------------EEVSKNPSNPQFNHYLFESIGLLIRKTCKANP---------- 630 (960)
T ss_pred HHHHhCHHhhhhhhhHHHHHHHHHH-------------HHHhcCCCCchhHHHHHHHHHHHHHHHhccCc----------
Confidence 7777666666677777777665442 23343333322232332222222222222221
Q ss_pred HHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhh--HH-----hhhhhcccccCCCc
Q psy14676 1241 DTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPA--AA-----SILPQIGRHTDLTS 1313 (1827)
Q Consensus 1241 ~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~--i~-----~~lgeiG~~~~~~~ 1313 (1827)
+ .-+.+...++|.+...+++.=.+..+.++.+++-+.+.+......+. +. ..+|+-.. .
T Consensus 631 --------~-~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~g-----N 696 (960)
T KOG1992|consen 631 --------S-AVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSG-----N 696 (960)
T ss_pred --------h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcC-----C
Confidence 0 01123445666666666655556667778888888776654222111 00 01111110 1
Q ss_pred hhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhc--CchhhHHHHHHHHHHHhhccccccchhhhh
Q psy14676 1314 VADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIEN--QPKRQYLLLHSLKEIISWQSTSTSGVAQLQ 1391 (1827)
Q Consensus 1314 ~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~--~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~ 1391 (1827)
+|.+..++...++-++..+- +.++++..|..+-+.+.+ ....-+.+|..+-+.+. ...+.
T Consensus 697 ipalvrLl~aflk~g~~~~~----------~~~~l~~iLGifqkLiaSka~Dh~GF~LLn~i~~~~~--------~~~~~ 758 (960)
T KOG1992|consen 697 IPALVRLLQAFLKTGSQIVE----------AADKLSGILGIFQKLIASKANDHHGFYLLNTIIESIP--------PNELA 758 (960)
T ss_pred cHHHHHHHHHHHhcCchhhc----------ccccchhHHHHHHHHhcCcccchhHHHHHHHHHhcCC--------Hhhhh
Confidence 23344444444443332222 112233344333333332 11233556777777665 45678
Q ss_pred chHHHHHHHHhhhhcC
Q psy14676 1392 QFVPAIWAQLFLHCEC 1407 (1827)
Q Consensus 1392 ~~~~~i~~~L~~~~~~ 1407 (1827)
||+.+||..+++.+.+
T Consensus 759 py~k~i~~llf~Rlqn 774 (960)
T KOG1992|consen 759 PYMKQIFGLLFQRLQN 774 (960)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998753
|
|
| >KOG2032|consensus | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0071 Score=73.42 Aligned_cols=200 Identities=17% Similarity=0.201 Sum_probs=140.3
Q ss_pred cCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCC
Q psy14676 1045 SNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSS 1124 (1827)
Q Consensus 1045 s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~ 1124 (1827)
+.+...|++++++-.++..+.+..+ +.++..+........+.-|... +.-+++..+|..-
T Consensus 191 s~~~~h~~g~trlqr~m~~~~~~~~--------------~~il~q~~ss~ts~~~~~ritd---~Af~ael~~~~~l--- 250 (533)
T KOG2032|consen 191 SDNDIHRVGLTRLQRFMACVQDLEM--------------GKILAQLLSSITSEKENGRITD---IAFFAELKRPKEL--- 250 (533)
T ss_pred ccCcccHHHHHHHHHHHHhhCCccH--------------HHHHhhcccccchhcccchHHH---HHHHHHHhCcccc---
Confidence 3455678888888888888776543 3333333333332222222222 2234444444211
Q ss_pred CCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhh---hhhhHHHHHHHHHHH
Q psy14676 1125 YDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLR---NEITRLTTVKALTKI 1201 (1827)
Q Consensus 1125 ~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~---~e~tR~~av~al~~i 1201 (1827)
+-.+.+..+|..+..+.. |.+..+|.-|+.++|..+.-.++....+.+.++..++..|- |++.-+++++++..+
T Consensus 251 -~~~~lL~s~~~~la~ka~--dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v 327 (533)
T KOG2032|consen 251 -DKTGLLGSVLLSLANKAT--DPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMV 327 (533)
T ss_pred -cccccHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 112567777777777766 88889999999999999998888888888888888888874 456689999999999
Q ss_pred hcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhc
Q psy14676 1202 AASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLV 1267 (1827)
Q Consensus 1202 a~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll 1267 (1827)
.......|+++|.-++.-.+..+..+.+...|.+++..++.|.+-.+..-.....+.+...+.+++
T Consensus 328 ~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~ll 393 (533)
T KOG2032|consen 328 LEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLL 393 (533)
T ss_pred HHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccce
Confidence 987777888999888777888888888899999999999999997766544334445555555554
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0035 Score=77.31 Aligned_cols=255 Identities=20% Similarity=0.209 Sum_probs=158.0
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh--HHHHHHHHHHHhcCCCccccch
Q psy14676 1135 YQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT--RLTTVKALTKIAASPLRIDLRP 1212 (1827)
Q Consensus 1135 ~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t--R~~av~al~~ia~~~~~~dl~p 1212 (1827)
.+.++..+. +.+..+|..|...++.+- ....+|.+.+.+.++.. |..|+.++|.+..
T Consensus 45 ~~~~~~~l~--~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------- 103 (335)
T COG1413 45 ADELLKLLE--DEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGELGD--------- 103 (335)
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC---------
Confidence 344455555 558899999999866643 35577778888876554 9999999887653
Q ss_pred hhhhhHhhhhhhhc-chhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHH-HHHHHhCC
Q psy14676 1213 ILTDGIPILGSFLR-KNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLL-TSIAKIQP 1290 (1827)
Q Consensus 1213 ~~~~~l~~L~~~Lr-k~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L-~~l~~~~~ 1290 (1827)
+..++.+..++. +.+..+|..+..+|+.+-.. . .+..+...+.+.+... . ...+ ..+.
T Consensus 104 --~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-------~----a~~~l~~~l~~~~~~~-a--~~~~~~~~~---- 163 (335)
T COG1413 104 --PEAVPPLVELLENDENEGVRAAAARALGKLGDE-------R----ALDPLLEALQDEDSGS-A--AAALDAALL---- 163 (335)
T ss_pred --hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-------h----hhHHHHHHhccchhhh-h--hhhccchHH----
Confidence 455777777777 57899999999999875331 1 1334445555544222 0 0000 0000
Q ss_pred CccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhc-CchhhHHH
Q psy14676 1291 NALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIEN-QPKRQYLL 1369 (1827)
Q Consensus 1291 ~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~-~~~~q~~~ 1369 (1827)
.+...++..++.+|- +...+.+...+.+....||.+|+.+||.++..+ ....+.+.+.+.+ ....++..
T Consensus 164 --~~r~~a~~~l~~~~~-------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 164 --DVRAAAAEALGELGD-------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred --HHHHHHHHHHHHcCC-------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-hhHHHHHHHHhcCCCHHHHHHH
Confidence 000112233334432 457788889999999999999999999998876 3344555555544 33455555
Q ss_pred HHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHHHH
Q psy14676 1370 LHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTT 1449 (1827)
Q Consensus 1370 l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t 1449 (1827)
+.+|+++-. ...... +...+.+.+..++...+.+++ ........+.+...+.+.+...|..
T Consensus 234 ~~~l~~~~~------------~~~~~~----l~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~ 294 (335)
T COG1413 234 LLALGEIGD------------EEAVDA----LAKALEDEDVILALLAAAALG---ALDLAEAALPLLLLLIDEANAVRLE 294 (335)
T ss_pred HHHhcccCc------------chhHHH----HHHHHhccchHHHHHHHHHhc---ccCchhhHHHHHHHhhcchhhHHHH
Confidence 555555421 112222 333333445556777777777 3334445566777777888888888
Q ss_pred HHHHHHHHhh
Q psy14676 1450 VLTAVKFTIS 1459 (1827)
Q Consensus 1450 ~l~Alk~~~~ 1459 (1827)
...++.....
T Consensus 295 ~~~~l~~~~~ 304 (335)
T COG1413 295 AALALGQIGQ 304 (335)
T ss_pred HHHHHHhhcc
Confidence 8888887764
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0012 Score=82.04 Aligned_cols=186 Identities=17% Similarity=0.085 Sum_probs=131.8
Q ss_pred HHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhh
Q psy14676 1002 WAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYS 1081 (1827)
Q Consensus 1002 l~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~ 1081 (1827)
+..+...+.+.+++||..+++.||.+. .+...+.|...+++.++.+|..++.+++.. ..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~---~~~a~~~L~~~L~~~~p~vR~aal~al~~r---~~--------------- 146 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG---GRQAEPWLEPLLAASEPPGRAIGLAALGAH---RH--------------- 146 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC---chHHHHHHHHHhcCCChHHHHHHHHHHHhh---cc---------------
Confidence 566777778888999999999998754 366788999999999999998888777651 11
Q ss_pred hhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy14676 1082 FYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQ 1161 (1827)
Q Consensus 1082 ~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~ 1161 (1827)
.-.+.+...++|.+|.|+.+|++++|.+-.. +. +.. +...+ .|.+.+||..|+.+++.
T Consensus 147 ---~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~----------~a---~~~----L~~al--~d~~~~VR~aA~~al~~ 204 (410)
T TIGR02270 147 ---DPGPALEAALTHEDALVRAAALRALGELPRR----------LS---EST----LRLYL--RDSDPEVRFAALEAGLL 204 (410)
T ss_pred ---ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc----------cc---hHH----HHHHH--cCCCHHHHHHHHHHHHH
Confidence 1235677778899999999999999986521 11 222 22223 38899999999999877
Q ss_pred HHHH---------h---hh--------hhh-hhhhhhHHHHHHhhhhhhhHHHHHHHHHHHhcCCCccccchhhhhhHhh
Q psy14676 1162 IICN---------L---GD--------YLK-SELPVCLPILLDRLRNEITRLTTVKALTKIAASPLRIDLRPILTDGIPI 1220 (1827)
Q Consensus 1162 l~~~---------~---g~--------~l~-~~l~~lL~~Ll~~L~~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~ 1220 (1827)
+-.. . |. .+. ..-+..++.|...++++.+|..++.++|.+.. +..++.
T Consensus 205 lG~~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~~vr~~a~~AlG~lg~-----------p~av~~ 273 (410)
T TIGR02270 205 AGSRLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAAATRREALRAVGLVGD-----------VEAAPW 273 (410)
T ss_pred cCCHhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcChhhHHHHHHHHHHcCC-----------cchHHH
Confidence 6211 0 10 000 01235667777777888899999999998864 345777
Q ss_pred hhhhhcchhHHHHHHHHHHHHHH
Q psy14676 1221 LGSFLRKNQRALKLSTLLLLDTL 1243 (1827)
Q Consensus 1221 L~~~Lrk~~r~lR~~al~aL~~L 1243 (1827)
|...+++.. +|..+-+++..+
T Consensus 274 L~~~l~d~~--~aR~A~eA~~~I 294 (410)
T TIGR02270 274 CLEAMREPP--WARLAGEAFSLI 294 (410)
T ss_pred HHHHhcCcH--HHHHHHHHHHHh
Confidence 777775443 778888888765
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.004 Score=76.80 Aligned_cols=246 Identities=17% Similarity=0.169 Sum_probs=162.7
Q ss_pred chHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHH
Q psy14676 1035 LLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVK 1114 (1827)
Q Consensus 1035 llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~ 1114 (1827)
..+.+.+.+.+.++..|..+...++.+. ....+|.+...+.|..+.||..|..+++.+-
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~--------------------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~- 102 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELG--------------------SEEAVPLLRELLSDEDPRVRDAAADALGELG- 102 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhc--------------------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC-
Confidence 4667777778878888888887766432 3367889999999999999999988666543
Q ss_pred HhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhh------
Q psy14676 1115 VIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNE------ 1188 (1827)
Q Consensus 1115 ~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e------ 1188 (1827)
.+..++.++..+. +|.+..||..|..++|.+-... .+..+++.+.++
T Consensus 103 ----------------~~~a~~~li~~l~-~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~ 155 (335)
T COG1413 103 ----------------DPEAVPPLVELLE-NDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAA 155 (335)
T ss_pred ----------------ChhHHHHHHHHHH-cCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhh
Confidence 1223344444554 3788899999999999864322 133333334332
Q ss_pred --------hhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHH
Q psy14676 1189 --------ITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVT 1260 (1827)
Q Consensus 1189 --------~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll 1260 (1827)
..|..++.+++.+.. +...+.+..++++..+.+|..+..+|+.+.... ..+.
T Consensus 156 ~~~~~~~~~~r~~a~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~ 215 (335)
T COG1413 156 AALDAALLDVRAAAAEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAA 215 (335)
T ss_pred hhccchHHHHHHHHHHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHH
Confidence 258888888887763 344667777888888899999999998765431 2345
Q ss_pred HHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHH
Q psy14676 1261 VELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTL 1340 (1827)
Q Consensus 1261 ~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aL 1340 (1827)
..+...+++.+..++..++..|+. +| ...-.+.+...+.+.+..++..++.++
T Consensus 216 ~~l~~~~~~~~~~vr~~~~~~l~~--------------------~~-------~~~~~~~l~~~l~~~~~~~~~~~~~~~ 268 (335)
T COG1413 216 DLLVKALSDESLEVRKAALLALGE--------------------IG-------DEEAVDALAKALEDEDVILALLAAAAL 268 (335)
T ss_pred HHHHHHhcCCCHHHHHHHHHHhcc--------------------cC-------cchhHHHHHHHHhccchHHHHHHHHHh
Confidence 566778888888888876655432 22 244667788888888888888888887
Q ss_pred hhhhhhhhhhhHHHHHHhhhcCchhhHHHHHHHHHHH
Q psy14676 1341 GSIAVGNLQQYVPFVLKEIENQPKRQYLLLHSLKEII 1377 (1827)
Q Consensus 1341 G~i~~~~l~~~LP~Il~~i~~~~~~q~~~l~aL~Eii 1377 (1827)
+... ......+.+..........++....+++.+.
T Consensus 269 ~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 269 GALD--LAEAALPLLLLLIDEANAVRLEAALALGQIG 303 (335)
T ss_pred cccC--chhhHHHHHHHhhcchhhHHHHHHHHHHhhc
Confidence 7322 2222333333333333344555555555553
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.61 E-value=4.3e-05 Score=67.05 Aligned_cols=55 Identities=25% Similarity=0.308 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHH
Q psy14676 258 WKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMAL 312 (1827)
Q Consensus 258 WkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~l 312 (1827)
|+||++|+.+|+.++...++.+.++.+.++|.|...++|.++.||..|+.+++.|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8999999999999888888889999999999999999999999999999999754
|
... |
| >KOG1061|consensus | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.042 Score=70.58 Aligned_cols=365 Identities=14% Similarity=0.179 Sum_probs=185.0
Q ss_pred hhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcC---CCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhccc
Q psy14676 833 NLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTT---NKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREE 909 (1827)
Q Consensus 833 ~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~---~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~ 909 (1827)
+|..|+...+.+ -+.++..++.+.+.+ +..+.+|+++.-+..-+-.--++.+ +-..+++.+-..+.|+
T Consensus 102 iR~lAlrtm~~l-------~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~--~~~gl~~~L~~ll~D~ 172 (734)
T KOG1061|consen 102 IRALALRTMGCL-------RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLV--EDSGLVDALKDLLSDS 172 (734)
T ss_pred HHHHHhhceeeE-------eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhc--cccchhHHHHHHhcCC
Confidence 777777666554 234455555555433 6788999998888777755444322 2345677777777788
Q ss_pred chHHHHHHHHHHHHHHhhCCCcccccc-ccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhccccc
Q psy14676 910 DDELREFCLQACEAFVQRCPKEITPHI-QSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTST 988 (1827)
Q Consensus 910 ~~~vre~al~Ale~~v~~~~~~i~p~l-~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~ 988 (1827)
++.|...|+.|+..+.+.-+..-.+.+ .++++ -++.+ ..++-.|..
T Consensus 173 ~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~------------~lL~a------------------l~ec~EW~q--- 219 (734)
T KOG1061|consen 173 NPMVVANALAALSEIHESHPSVNLLELNPQLIN------------KLLEA------------------LNECTEWGQ--- 219 (734)
T ss_pred CchHHHHHHHHHHHHHHhCCCCCcccccHHHHH------------HHHHH------------------HHHhhhhhH---
Confidence 999998999998776654443111111 10000 00000 001112221
Q ss_pred chhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCC------CchHHHHHHhccCChhhHHHHHHHHHHHH
Q psy14676 989 SGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPS------NLLPRLQESLKSNSALMRTTHQSNQTFNV 1062 (1827)
Q Consensus 989 ~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~------~llP~L~~~L~s~~~~~R~~a~~~L~~l~ 1062 (1827)
+.+|+.++...|. .++..+...+.+.++.+-.++..++-.+.
T Consensus 220 --------------------------------i~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~ 267 (734)
T KOG1061|consen 220 --------------------------------IFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLV 267 (734)
T ss_pred --------------------------------HHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHH
Confidence 2333333333332 23333444445555555555555555332
Q ss_pred HhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCC-CCCCcchhHHHHHHHHHHH
Q psy14676 1063 IIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSP-SSYDFAPFTSDIYQCTLVR 1141 (1827)
Q Consensus 1063 ~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~-~~~~~~~~l~~l~~~ll~~ 1141 (1827)
.-....-.. ++..+-|+++..+.-+. .+.--|++-+..++........+ -..-|-.|.+++|
T Consensus 268 ~~~~~~~~~----------~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiY------ 330 (734)
T KOG1061|consen 268 KYLKQVNEL----------LFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIY------ 330 (734)
T ss_pred HHHHHHHHH----------HHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchh------
Confidence 222211111 24556666655554333 55556666666665431100000 0011222333333
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh--HHHHHHHHHHHhcCCCccccchhhhhhHh
Q psy14676 1142 LKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT--RLTTVKALTKIAASPLRIDLRPILTDGIP 1219 (1827)
Q Consensus 1142 L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t--R~~av~al~~ia~~~~~~dl~p~~~~~l~ 1219 (1827)
|+..=+.++-.++. ...+++++.-+.+.-.+-+. -..+|||+|.++... +.+ +.++.
T Consensus 331 ---------vK~eKleil~~la~------~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~-----e~~-~~cv~ 389 (734)
T KOG1061|consen 331 ---------VKLEKLEILIELAN------DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKA-----EQS-NDCVS 389 (734)
T ss_pred ---------hHHHHHHHHHHHhh------HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhh-----hhh-hhhHH
Confidence 33334444444432 12334444444444333222 467999999988542 334 77888
Q ss_pred hhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCC-CChhHHHHHHHHHHHHHHhCCCccchhhH
Q psy14676 1220 ILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSE-SDLHIAQLTLTLLTSIAKIQPNALVEPAA 1298 (1827)
Q Consensus 1220 ~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d-~D~~l~~~al~~L~~l~~~~~~~~~~~~i 1298 (1827)
.|..+++-....+.+.+...+..++..|+... +.+++.+..-+.. +++..+...+-++
T Consensus 390 ~lLell~~~~~yvvqE~~vvi~dilRkyP~~~-----~~vv~~l~~~~~sl~epeak~amiWil---------------- 448 (734)
T KOG1061|consen 390 ILLELLETKVDYVVQEAIVVIRDILRKYPNKY-----ESVVAILCENLDSLQEPEAKAALIWIL---------------- 448 (734)
T ss_pred HHHHHHhhcccceeeehhHHHHhhhhcCCCch-----hhhhhhhcccccccCChHHHHHHHHHH----------------
Confidence 88888873333455566667777777766532 3344444332222 2333333322222
Q ss_pred HhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHH
Q psy14676 1299 ASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAA 1336 (1827)
Q Consensus 1299 ~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aA 1336 (1827)
|+-+.++ +..+.++..|++.|.++..+|+..-
T Consensus 449 ----g~y~~~i--~~a~elL~~f~en~~dE~~~Vql~L 480 (734)
T KOG1061|consen 449 ----GEYAERI--ENALELLESFLENFKDETAEVQLEL 480 (734)
T ss_pred ----hhhhhcc--CcHHHHHHHHHhhcccchHHHHHHH
Confidence 2322233 2336799999999999988887644
|
|
| >KOG2032|consensus | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.062 Score=65.60 Aligned_cols=104 Identities=14% Similarity=0.161 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhc-CCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChH
Q psy14676 259 KVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARF-KEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPL 337 (1827)
Q Consensus 259 kVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l-~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1827)
++|+.|+.+|+..++..|+....+++.++..++..+ ++-+++|-.+++.++..++.... .
T Consensus 273 ~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~---~---------------- 333 (533)
T KOG2032|consen 273 KSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS---N---------------- 333 (533)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh---h----------------
Confidence 899999999999999989888899999999999877 45568999999999987774321 1
Q ss_pred hhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccc
Q psy14676 338 CLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCL 381 (1827)
Q Consensus 338 ~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l 381 (1827)
..+.+++-.|.-.+...++++++++|.+++.+++.|+...++.-
T Consensus 334 ~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~ 377 (533)
T KOG2032|consen 334 DDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGW 377 (533)
T ss_pred cchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCc
Confidence 12445555566666777889999999999999999999887743
|
|
| >KOG2021|consensus | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.59 Score=59.76 Aligned_cols=298 Identities=14% Similarity=0.165 Sum_probs=159.7
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCCch-hH----HHHHHH-hhhcCCC----CHHHHHHHHHHHHHHHHhhchhHHHHHH
Q psy14676 50 EDVSVQLEALDILSDLLSRFGALLPSF-HF----VILTAL-LPQLSSP----RQAVRKRTIVALSHLVMSCNLQLYTKLI 119 (1827)
Q Consensus 50 ~~~~v~~~al~iL~~l~~~~~~~l~~~-~~----~il~~l-l~~L~~~----~~~VRk~Ai~aL~~l~~~~~~~~~~~l~ 119 (1827)
.++.+|--++..|.+.++..-...... .. .+..-+ .+.+.+. -+-++.++...+..+....-+..|+.++
T Consensus 51 s~d~vkf~clqtL~e~vrekyne~nl~elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF 130 (980)
T KOG2021|consen 51 SNDLVKFYCLQTLIELVREKYNEANLNELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFF 130 (980)
T ss_pred ccchhhhhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 467888899999999888775544332 12 222222 2334444 3578999988888888877777788888
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHHhc------------------hhh-HHhHHHHHHHHHhhcc---c-CchHHH
Q psy14676 120 DFLLEGLTTNKSTSTNRTYIQCFAAICRQAG------------------HRF-AEHIERVMPLILKYSR---E-EDDELR 176 (1827)
Q Consensus 120 ~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~------------------~~~-~p~l~~i~p~l~~~~~---~-~~delR 176 (1827)
..++..+..+...+--.-.+..+-++-.... +.+ .+-+++++....++++ . -++++-
T Consensus 131 ~dlmsv~~~~s~~~~~dfflkvllaIdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~ 210 (980)
T KOG2021|consen 131 DDLMSVFQVDSAISGLDFFLKVLLAIDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLI 210 (980)
T ss_pred HHHHHHHhcccchhhHHHHHHHHHHhhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHH
Confidence 8888777543221112222222222221110 111 1123444444444432 1 267777
Q ss_pred HHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccc
Q psy14676 177 EFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDM 256 (1827)
Q Consensus 177 e~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~ 256 (1827)
-.|+++.++|+.-..-.+-. =+.-++++.+.|..
T Consensus 211 ~~cLdc~g~fVSWIdInLIa-Nd~f~nLLy~fl~i--------------------------------------------- 244 (980)
T KOG2021|consen 211 NSCLDCIGSFVSWIDINLIA-NDYFLNLLYKFLNI--------------------------------------------- 244 (980)
T ss_pred HHHHHHHHHHhhhhhhhhhh-chhHHHHHHHHHhH---------------------------------------------
Confidence 78888888877743211000 01234555555422
Q ss_pred hhhHHHHHHHHHHHHHHHcCCchh--hhHHhhhHHHH-hhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCC
Q psy14676 257 SWKVRRAAAKCLEAIIATRRDLIG--DMYRLVSPPLI-ARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQE 333 (1827)
Q Consensus 257 sWkVRraAak~L~~l~~~~~~~l~--~~~~~v~p~L~-~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~ 333 (1827)
-.+|-+|+.|+-++++..-+-.. ++++.+...+. ..++..+..+-.+-+..++.++...|..--...+..+ +..
T Consensus 245 -eelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~ln--sel 321 (980)
T KOG2021|consen 245 -EELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLN--SEL 321 (980)
T ss_pred -HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhhh--hcc
Confidence 03899999999999976543221 13333322221 1223333333445566667776554421100001111 111
Q ss_pred CC-hHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcc--cc----cCchhhHHHHHHHHh
Q psy14676 334 DS-PLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPG--CL----APSLPALIPDVTSVA 396 (1827)
Q Consensus 334 ~~-~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~--~l----~~~l~~Llp~i~~~L 396 (1827)
+. ..+....++-.++|.+++.|.++.....-+.+.++......+.+ ++ ..++..++..+.+-+
T Consensus 322 d~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqi 391 (980)
T KOG2021|consen 322 DTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQI 391 (980)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHH
Confidence 11 12234445555899999999988888888888887766655543 23 246667766665554
|
|
| >KOG2956|consensus | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0069 Score=73.08 Aligned_cols=218 Identities=14% Similarity=0.216 Sum_probs=150.7
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHH-HHHHHHHHhchhhHHhHHHHHHHHHhhccc-CchHHHHHHHHHHHHHHHhCCCc
Q psy14676 116 TKLIDFLLEGLTTNKSTSTNRTYIQ-CFAAICRQAGHRFAEHIERVMPLILKYSRE-EDDELREFCLQACEAFVQRCPKE 193 (1827)
Q Consensus 116 ~~l~~~ll~~L~~~~~~~~r~~ai~-~l~~la~~~~~~~~p~l~~i~p~l~~~~~~-~~delRe~al~ale~~~~~~p~e 193 (1827)
.+++.+++..+..+...+.++.+++ ....+++..-.-...|+.+|+-.+++.+.+ .++-.|+.|+..+.-+++.-|..
T Consensus 285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~ 364 (516)
T KOG2956|consen 285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR 364 (516)
T ss_pred hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh
Confidence 3577788888876655566777776 555555555566678899999999999988 66777889999898888887877
Q ss_pred cccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHH
Q psy14676 194 ITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIA 273 (1827)
Q Consensus 194 ~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~ 273 (1827)
+..+..-.|.-.++.-+. + .| -.+|-|+-.|+-.+++
T Consensus 365 l~DstE~ai~K~Leaa~d-s--------------------------------------~~----~v~~~Aeed~~~~las 401 (516)
T KOG2956|consen 365 LFDSTEIAICKVLEAAKD-S--------------------------------------QD----EVMRVAEEDCLTTLAS 401 (516)
T ss_pred hhchHHHHHHHHHHHHhC-C--------------------------------------ch----hHHHHHHHHHHHHHHh
Confidence 666665555555543211 0 00 0345555556666666
Q ss_pred HcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHH
Q psy14676 274 TRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQC 353 (1827)
Q Consensus 274 ~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~ 353 (1827)
+.|. .-...+.|.++. .++..-.+++..+..+++.. ..+.|-.++|.|.|.+++
T Consensus 402 ~~P~---~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l-------------------~~EeL~~ll~diaP~~iq 455 (516)
T KOG2956|consen 402 HLPL---QCIVNISPLILT----ADEPRAVAVIKMLTKLFERL-------------------SAEELLNLLPDIAPCVIQ 455 (516)
T ss_pred hCch---hHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhc-------------------CHHHHHHhhhhhhhHHHH
Confidence 6553 224455666654 33444455666777777432 235688899999999999
Q ss_pred HhccCCHhHHHHHHHHHHHHHHhCc-ccccCchhhHHHHHHHHhhhhhcc
Q psy14676 354 QLREKSIRTRQDCLALLRELVQTLP-GCLAPSLPALIPDVTSVAEWDEEE 402 (1827)
Q Consensus 354 ~L~d~~~~vR~a~~~ll~~L~~vl~-~~l~~~l~~Llp~i~~~L~~~~~~ 402 (1827)
.....+..||.+|.-.|-.+..++| ..+.+|+.+|-.+-..+++=.-++
T Consensus 456 ay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinR 505 (516)
T KOG2956|consen 456 AYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINR 505 (516)
T ss_pred HhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHH
Confidence 9999999999988888888888888 799999999888766666433333
|
|
| >KOG2259|consensus | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.019 Score=71.53 Aligned_cols=286 Identities=15% Similarity=0.136 Sum_probs=178.7
Q ss_pred ccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhc-cCCCC
Q psy14676 1044 KSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIR-PLTSP 1122 (1827)
Q Consensus 1044 ~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~-~~~~~ 1122 (1827)
.+.++.+|..|+..|-.+.. +++- -..+.....+.+.|++..||.+|.+.+..+.+..- |..
T Consensus 208 ~~~D~~Vrt~A~eglL~L~e----g~kL-----------~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e-- 270 (823)
T KOG2259|consen 208 HDQDFRVRTHAVEGLLALSE----GFKL-----------SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLE-- 270 (823)
T ss_pred cCCCcchHHHHHHHHHhhcc----cccc-----------cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCccc--
Confidence 44556667666666554443 2221 12345556778899999999999998888876541 111
Q ss_pred CCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHHHHh
Q psy14676 1123 SSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIA 1202 (1827)
Q Consensus 1123 ~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~av~al~~ia 1202 (1827)
....-....+..|..+...+. |....||-.|..++|.+-....+.+. +++=..++.+++..-|....-+.+-.=+
T Consensus 271 ~e~~e~kl~D~aF~~vC~~v~--D~sl~VRV~AaK~lG~~~~vSee~i~---QTLdKKlms~lRRkr~ahkrpk~l~s~G 345 (823)
T KOG2259|consen 271 RESEEEKLKDAAFSSVCRAVR--DRSLSVRVEAAKALGEFEQVSEEIIQ---QTLDKKLMSRLRRKRTAHKRPKALYSSG 345 (823)
T ss_pred chhhhhhhHHHHHHHHHHHHh--cCceeeeehHHHHhchHHHhHHHHHH---HHHHHHHhhhhhhhhhcccchHHHHhcC
Confidence 111122345667777777776 88888999999999997665433222 1222233334433322111111111111
Q ss_pred c-CCCc---cc-----cc----hhh-hhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcC
Q psy14676 1203 A-SPLR---ID-----LR----PIL-TDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVS 1268 (1827)
Q Consensus 1203 ~-~~~~---~d-----l~----p~~-~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~ 1268 (1827)
+ +.++ .| .+ .++ +...-.+...+.|.=-++|.+++.+++.|+.+.++ ....-+..|...++
T Consensus 346 ewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~-----FA~~aldfLvDMfN 420 (823)
T KOG2259|consen 346 EWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG-----FAVRALDFLVDMFN 420 (823)
T ss_pred CcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC-----cHHHHHHHHHHHhc
Confidence 0 1110 00 00 111 11234566667777788999999999999886443 34445667788999
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhh--
Q psy14676 1269 ESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVG-- 1346 (1827)
Q Consensus 1269 d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~-- 1346 (1827)
|+...||-.++..|..++... .-..+.+++++.++.|.+.+||+++=.-|++.-+.
T Consensus 421 DE~~~VRL~ai~aL~~Is~~l----------------------~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~ 478 (823)
T KOG2259|consen 421 DEIEVVRLKAIFALTMISVHL----------------------AIREEQLRQILESLEDRSVDVREALRELLKNARVSDL 478 (823)
T ss_pred cHHHHHHHHHHHHHHHHHHHh----------------------eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcH
Confidence 999999999999988877631 11257889999999999999999998888874433
Q ss_pred -hhhhhHHHHHHhhhcCchhhHHHHHHHHHHHh
Q psy14676 1347 -NLQQYVPFVLKEIENQPKRQYLLLHSLKEIIS 1378 (1827)
Q Consensus 1347 -~l~~~LP~Il~~i~~~~~~q~~~l~aL~Eii~ 1378 (1827)
.+.-.+..+++.++.-|+.+--++.+++-|-+
T Consensus 479 ~~i~m~v~~lL~~L~kyPqDrd~i~~cm~~iGq 511 (823)
T KOG2259|consen 479 ECIDMCVAHLLKNLGKYPQDRDEILRCMGRIGQ 511 (823)
T ss_pred HHHHHHHHHHHHHhhhCCCCcHHHHHHHHHHhc
Confidence 33445666677666666666677788888755
|
|
| >KOG4653|consensus | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0075 Score=77.22 Aligned_cols=219 Identities=17% Similarity=0.180 Sum_probs=158.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhc--cCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhc
Q psy14676 49 QEDVSVQLEALDILSDLLSRF--GALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGL 126 (1827)
Q Consensus 49 ~~~~~v~~~al~iL~~l~~~~--~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L 126 (1827)
++-+.+|..++.-|..+++.- .+.+ ....++..++..|.|.++-|=-.|+.++..+++..+++.++.+.+.+.+.=
T Consensus 738 d~qvpik~~gL~~l~~l~e~r~~~~~~--~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k 815 (982)
T KOG4653|consen 738 DDQVPIKGYGLQMLRHLIEKRKKATLI--QGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEK 815 (982)
T ss_pred CCcccchHHHHHHHHHHHHhcchhhhh--hHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhcc
Confidence 346789999999999999943 3333 345789999999999999999999999999999988888877776666543
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHH
Q psy14676 127 TTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCL 206 (1827)
Q Consensus 127 ~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll 206 (1827)
.+. .++.|-.+=++++.+++..|+-+..|.+.++..++..+.+++.+.|-+++.+++.++....-....++-.++..++
T Consensus 816 ~k~-~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il 894 (982)
T KOG4653|consen 816 KKL-QTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLIL 894 (982)
T ss_pred cCC-CccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 222 2445555669999999999999999999999999999998888899999988888877654333334444444444
Q ss_pred HHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhh
Q psy14676 207 TYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLV 286 (1827)
Q Consensus 207 ~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v 286 (1827)
...+- |.+.-|||||+..+..+..+.+..+.|++...
T Consensus 895 ~l~~~-------------------------------------------d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~ 931 (982)
T KOG4653|consen 895 SLETT-------------------------------------------DGSVLVRRAAVHLLAELLNGTGEDLLPILRLL 931 (982)
T ss_pred HHHcc-------------------------------------------CCchhhHHHHHHHHHHHHhccchhhHHHHHHH
Confidence 33211 12347999999999999888776555544322
Q ss_pred ----hHHHHhhc-CCCCHhHHHHHHHHHHHHH
Q psy14676 287 ----SPPLIARF-KEREENVKSDIFHAYMALL 313 (1827)
Q Consensus 287 ----~p~L~~~l-~e~ee~VR~aa~~al~~ll 313 (1827)
.-.+..+. .++++.+|.-+..++-.+-
T Consensus 932 l~Dl~~tl~~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 932 LIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 12222222 4566667777776665554
|
|
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.23 Score=63.18 Aligned_cols=308 Identities=11% Similarity=0.096 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHh----cC---CCHHHHHHHHHHHHHHHhhccCCCCch----hHHHHHHHhhhcCCCCHHHHHHHHHHH
Q psy14676 35 CRRITGKLSTAIE----KQ---EDVSVQLEALDILSDLLSRFGALLPSF----HFVILTALLPQLSSPRQAVRKRTIVAL 103 (1827)
Q Consensus 35 ~~~L~P~Ll~~l~----~~---~~~~v~~~al~iL~~l~~~~~~~l~~~----~~~il~~ll~~L~~~~~~VRk~Ai~aL 103 (1827)
..-++|++..-+. ++ .+++-.++|+..++.+.. |.....+. ..-+++.++|.++++-.-.|.||+.-+
T Consensus 406 fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s-~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~i 484 (970)
T COG5656 406 FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKS-FITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFI 484 (970)
T ss_pred hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHH-HhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHH
Confidence 4446677766551 11 257778999999999988 54443332 335788889999999999999999999
Q ss_pred HHHHHhhchh-HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHh--chhhHHhHHHHHHHHHhhcccCchHHHHHHH
Q psy14676 104 SHLVMSCNLQ-LYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQA--GHRFAEHIERVMPLILKYSREEDDELREFCL 180 (1827)
Q Consensus 104 ~~l~~~~~~~-~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~--~~~~~p~l~~i~p~l~~~~~~~~delRe~al 180 (1827)
+.+.+..++. ...+..+.....+++ ++..++-++.-++..+..+. -..|..|++.+|+-++...++=+-+.- -
T Consensus 485 s~~eeDfkd~~ill~aye~t~ncl~n-n~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~L---S 560 (970)
T COG5656 485 STIEEDFKDNGILLEAYENTHNCLKN-NHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPL---S 560 (970)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHH---H
Confidence 9998887765 345566777777766 44567777777777777654 467888999999988887654222221 2
Q ss_pred HHHHHHHHhCCCccccchHHHHHHHHH-HhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhh
Q psy14676 181 QACEAFVQRCPKEITPHIQSITELCLT-YITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWK 259 (1827)
Q Consensus 181 ~ale~~~~~~p~e~~p~l~~ii~~ll~-~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWk 259 (1827)
..++.|+++.+++++||-+.++..+.+ +++.-. + -+++. +|-++-.||.+.
T Consensus 561 ~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq----~-------------l~ens----------~d~~s~vDDKqm- 612 (970)
T COG5656 561 MVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQ----S-------------LLENS----------SDTSSVVDDKQM- 612 (970)
T ss_pred HHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHH----H-------------HHcCC----------ccccccccHHHH-
Confidence 346899999999999999888877765 222100 0 00000 011122223221
Q ss_pred HHHHHHHHHHHHHHH---cCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCh
Q psy14676 260 VRRAAAKCLEAIIAT---RRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSP 336 (1827)
Q Consensus 260 VRraAak~L~~l~~~---~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~ 336 (1827)
+-.+-.+.+.+++-+ +|+.+...+....|++-.-+++.-.++-.+++.-+-... ..
T Consensus 613 aasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~t---------------------f~ 671 (970)
T COG5656 613 AASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYT---------------------FM 671 (970)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhh---------------------HH
Confidence 111233344555544 345555567777887766666555555555544332111 11
Q ss_pred HhhHHhhhHHHHHHHHHHhccCCH-hHHHHHHHHHHHHHHhCcccc---cCchhhHHHHHHHHh
Q psy14676 337 LCLLSTQVPSLVKALQCQLREKSI-RTRQDCLALLRELVQTLPGCL---APSLPALIPDVTSVA 396 (1827)
Q Consensus 337 ~~~l~~~lp~Iv~~l~~~L~d~~~-~vR~a~~~ll~~L~~vl~~~l---~~~l~~Llp~i~~~L 396 (1827)
...+.+.++.|...+++.++++.. ..-....-++.......+..+ .-|...+...+..++
T Consensus 672 skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l 735 (970)
T COG5656 672 SKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCL 735 (970)
T ss_pred HHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHH
Confidence 234567788888888888887764 333345555566666555544 235555555555665
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0012 Score=64.00 Aligned_cols=88 Identities=19% Similarity=0.201 Sum_probs=71.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHH
Q psy14676 39 TGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKL 118 (1827)
Q Consensus 39 ~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l 118 (1827)
+|.|++.+.+++++.+|..++.+|+++ ..+..++.+...++|+++.||..|+.+|+.+.. ...
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRIGD-------PEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-------HHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------HHH
Confidence 588999996678999999999999921 345789999999999999999999999998852 335
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHH
Q psy14676 119 IDFLLEGLTTNKSTSTNRTYIQCFA 143 (1827)
Q Consensus 119 ~~~ll~~L~~~~~~~~r~~ai~~l~ 143 (1827)
++.+.+.+.++.+..+|..++++||
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 6667777777677788999998886
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0071 Score=69.50 Aligned_cols=237 Identities=15% Similarity=0.174 Sum_probs=123.8
Q ss_pred hhHHHHHhhc-CCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHH-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q psy14676 1086 LLSPVIASVG-DNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTS-DIYQCTLVRLKAADIDQEVKERAISCMGQII 1163 (1827)
Q Consensus 1086 Lip~l~~~l~-D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~-~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~ 1163 (1827)
.+|.++..+. ....+..-||.+++..++.- ++..-+..++ .-+|.++..|. +...+||+.|+.|||.++
T Consensus 115 vVpRfvefm~~~q~~mlqfEAaWalTNiaSG-------tt~QTkvVvd~~AVPlfiqlL~--s~~~~V~eQavWALGNiA 185 (526)
T COG5064 115 VVPRFVEFMDEIQRDMLQFEAAWALTNIASG-------TTQQTKVVVDAGAVPLFIQLLS--STEDDVREQAVWALGNIA 185 (526)
T ss_pred ccHHHHHHHHhcchhHHHHHHHHHHhhhccC-------cccceEEEEeCCchHHHHHHHc--CchHHHHHHHHHHhcccc
Confidence 5566666662 33344555888887776631 1111111111 12233344454 778899999999999987
Q ss_pred HHhh---h-hhh-hhhhhhHHHHHHhhhhhh-hHHHHHHHHHHHhcCCC-ccccchhhhhhHhhhhhhhcchhHHHHHHH
Q psy14676 1164 CNLG---D-YLK-SELPVCLPILLDRLRNEI-TRLTTVKALTKIAASPL-RIDLRPILTDGIPILGSFLRKNQRALKLST 1236 (1827)
Q Consensus 1164 ~~~g---~-~l~-~~l~~lL~~Ll~~L~~e~-tR~~av~al~~ia~~~~-~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~a 1236 (1827)
.-.. + .|. .-+.++|..|...-..=. .|- +--.+..++..-. ..+ -.-+...+|.|..++-.-+.++-.-+
T Consensus 186 GDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn-~TWtLSNlcRGknP~P~-w~~isqalpiL~KLiys~D~evlvDA 263 (526)
T COG5064 186 GDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRN-ATWTLSNLCRGKNPPPD-WSNISQALPILAKLIYSRDPEVLVDA 263 (526)
T ss_pred CCchhHHHHHHhcCchHHHHHHHHhccchHHHHHH-hHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 4321 1 222 235556666542211000 122 2223455554211 111 11255678888877765555666666
Q ss_pred HHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhh
Q psy14676 1237 LLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVAD 1316 (1827)
Q Consensus 1237 l~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~ 1316 (1827)
.-|+.-|..-....+..-.=..+.+-|..+|++.+..+..+++..++.+......... +--. -.
T Consensus 264 ~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTq----------viI~------~G 327 (526)
T COG5064 264 CWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQ----------VIIN------CG 327 (526)
T ss_pred HHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCcccee----------hhee------cc
Confidence 6677665442211111100001233455667777776666666666555443221110 0001 12
Q ss_pred HHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhh
Q psy14676 1317 LKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQ 1349 (1827)
Q Consensus 1317 l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~ 1349 (1827)
.++.|...+.++-+.+|..|...+.+|-+||..
T Consensus 328 ~L~a~~~lLs~~ke~irKEaCWTiSNITAGnte 360 (526)
T COG5064 328 ALKAFRSLLSSPKENIRKEACWTISNITAGNTE 360 (526)
T ss_pred cHHHHHHHhcChhhhhhhhhheeecccccCCHH
Confidence 456666678888889999999999998888754
|
|
| >KOG0414|consensus | Back alignment and domain information |
|---|
Probab=97.38 E-value=1.3 Score=59.91 Aligned_cols=132 Identities=20% Similarity=0.278 Sum_probs=90.5
Q ss_pred HHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHh-hchhH--------HHHHHHHHHHhccC
Q psy14676 58 ALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMS-CNLQL--------YTKLIDFLLEGLTT 128 (1827)
Q Consensus 58 al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~-~~~~~--------~~~l~~~ll~~L~~ 128 (1827)
.....+.++..+...+......-+..+++.|++.+-..|..-+.++++++.. +.+.. -..+++.+.+++.+
T Consensus 291 g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~D 370 (1251)
T KOG0414|consen 291 GPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLD 370 (1251)
T ss_pred chhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444444433333334566677778888889999888888888764 33221 12355566666543
Q ss_pred CCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCC
Q psy14676 129 NKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCP 191 (1827)
Q Consensus 129 ~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p 191 (1827)
.++-+|-.+++.+..+++......+ ...+++.....-+.+...=||..|.+-+..|..+-|
T Consensus 371 -vsa~vRskVLqv~~~l~~~~s~p~~-~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 371 -VSAYVRSKVLQVFRRLFQQHSIPLG-SRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHP 431 (1251)
T ss_pred -ccHHHHHHHHHHHHHHHHccCCCcc-HHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCC
Confidence 5688999999999999986554433 356788888888888888899999999988888765
|
|
| >KOG1820|consensus | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.011 Score=78.62 Aligned_cols=344 Identities=17% Similarity=0.175 Sum_probs=212.6
Q ss_pred hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhch----
Q psy14676 76 FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGH---- 151 (1827)
Q Consensus 76 ~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~---- 151 (1827)
....++.....+|.++.+..|.....++..+...- ....++..+...+.. ..+..-..++.++.++.+..+.
T Consensus 60 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~---~~~~~~e~~~~~~~~-k~pk~~~~~~~~~~~lv~~~g~p~~~ 135 (815)
T KOG1820|consen 60 KNIQLLSFGLKCLDSKRVNIRDTKTQSLLRIGKLE---DIKEVVEAAKALLSF-KSPKKIAAAVAAVLSLVEEFGKPKVP 135 (815)
T ss_pred cceeeccchhhhcccccccccCcchhHHHHHHHhh---hhHHHHHHHHhhccc-cCchhHHHHHHHHHHHHHHhcCCCCc
Confidence 34466666777777777777777777777763322 123344444444432 2234455666677777665542
Q ss_pred --hhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchH-----HHHHHHHHHhcc-------------
Q psy14676 152 --RFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQ-----SITELCLTYITY------------- 211 (1827)
Q Consensus 152 --~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~-----~ii~~ll~~l~~------------- 211 (1827)
.|.+|+..++ |-.+|..+...+..+.+.++..+.+|+- .++.-+-.+...
T Consensus 136 ~~~~~~~~~~l~----------D~nvr~~~~~l~v~i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 205 (815)
T KOG1820|consen 136 SKAFIKHVGSLA----------DKNVRSEASKLLVEIYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLL 205 (815)
T ss_pred cccccccCcccc----------ccccchhhcccchhhhhhcCCCcCcccchhhhHHHHHHHHhhcccccccccccccccc
Confidence 2334444333 4556777777777777777776666542 222222222111
Q ss_pred --------CCCCCc--ccccccCCCCCC-CCCCCCcccCCCCCCCCCCCC-----CCCccchhhHHHHHHHHHHHHHHHc
Q psy14676 212 --------DPNYNY--EDEEEGLGGEGG-GEGMDTEEEDGEDEGEDDNEY-----SDDDDMSWKVRRAAAKCLEAIIATR 275 (1827)
Q Consensus 212 --------dpn~~~--~ddd~~~~~~~~-~~~~d~~~~d~dde~e~~~e~-----sdddD~sWkVRraAak~L~~l~~~~ 275 (1827)
+||... +.+........+ +..+ .+..|.-+..+.-+.. ..-.+.-|+-|..|...+-.++...
T Consensus 206 ~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~-~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~ 284 (815)
T KOG1820|consen 206 KSQPQDESDPNVKEQLEKPERGLQRSKSGFTSP-IDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEA 284 (815)
T ss_pred ccccccccCCChhhcccccccccccccCCCCCC-ccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhcc
Confidence 122100 000000000000 0000 0000000000000000 0112345999999999998888876
Q ss_pred C-CchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHH
Q psy14676 276 R-DLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQ 354 (1827)
Q Consensus 276 ~-~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~ 354 (1827)
+ +....++..+..++-.+++|.+-+|-.-++..+..+....+ .....+...+.|.++..
T Consensus 285 ~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr--------------------~~~~~~~~~v~p~lld~ 344 (815)
T KOG1820|consen 285 KKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR--------------------PLFRKYAKNVFPSLLDR 344 (815)
T ss_pred ccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc--------------------hhhHHHHHhhcchHHHH
Confidence 6 55566888888889999999999999999999988886543 22456677778888889
Q ss_pred hccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q psy14676 355 LREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDD 434 (1827)
Q Consensus 355 L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~ 434 (1827)
++|+.+.+|.+....+....+ +-++..+.+.|...+.+
T Consensus 345 lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~------------------------------------ 382 (815)
T KOG1820|consen 345 LKEKKSELRDALLKALDAILN------STPLSKMSEAILEALKG------------------------------------ 382 (815)
T ss_pred hhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcC------------------------------------
Confidence 999999999998888877776 44566777888887743
Q ss_pred cccHHHHHHHHHHHHHHHHHhh--hhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcc
Q psy14676 435 DMSWKVRRAAAKCLEAIIATRR--DLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTR 497 (1827)
Q Consensus 435 d~~w~vr~~a~~~l~~l~~~~~--~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g 497 (1827)
.+.++|.....++.......+ -.+..-+..+.|++++..+|+...||.+|++++..+.+++|
T Consensus 383 -knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 383 -KNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred -CChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 345566666666666666665 34556778899999999999999999999999999999988
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00022 Score=62.54 Aligned_cols=54 Identities=11% Similarity=0.217 Sum_probs=51.0
Q ss_pred hhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHH
Q psy14676 870 TSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEA 923 (1827)
Q Consensus 870 ~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~ 923 (1827)
|.+|..++.++|.++...++.+.+|+++++|.++..++|++++||..|+.||+.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 478999999999999999999999999999999999999999999999999874
|
... |
| >KOG2956|consensus | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.01 Score=71.72 Aligned_cols=172 Identities=17% Similarity=0.221 Sum_probs=127.2
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCC-CHHHHHHHHHHHHHHHHhhc
Q psy14676 33 NVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSP-RQAVRKRTIVALSHLVMSCN 111 (1827)
Q Consensus 33 ~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~-~~~VRk~Ai~aL~~l~~~~~ 111 (1827)
..-.+|+--+++-+.+..+...+..||.+|.++++.-+..+-.+-.-....+++.=.|. +..+|.++-.|+..++.+.+
T Consensus 325 q~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P 404 (516)
T KOG2956|consen 325 QHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLP 404 (516)
T ss_pred HHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCc
Confidence 34466777777888765688899999999999999988877665444444455555554 45777777777777777776
Q ss_pred hhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc-hhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhC
Q psy14676 112 LQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG-HRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRC 190 (1827)
Q Consensus 112 ~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~-~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~ 190 (1827)
-.-+..+ ..++. . .+...--.++.++..+++... +.+-+.+++|+|.+++........+|..|..+|-+++.+.
T Consensus 405 ~~~I~~i-~~~Il---t-~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~v 479 (516)
T KOG2956|consen 405 LQCIVNI-SPLIL---T-ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRV 479 (516)
T ss_pred hhHHHHH-hhHHh---c-CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHH
Confidence 5443332 22222 2 233455667778888888775 6688899999999999999889999999999999999999
Q ss_pred C-CccccchHHHHHHHHHHh
Q psy14676 191 P-KEITPHIQSITELCLTYI 209 (1827)
Q Consensus 191 p-~e~~p~l~~ii~~ll~~l 209 (1827)
| ++|.||+..+-..-++.+
T Consensus 480 G~~~mePhL~~Lt~sk~~Ll 499 (516)
T KOG2956|consen 480 GMEEMEPHLEQLTSSKLNLL 499 (516)
T ss_pred hHHhhhhHhhhccHHHHHHH
Confidence 9 899999987655555444
|
|
| >KOG0168|consensus | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.14 Score=65.97 Aligned_cols=174 Identities=12% Similarity=0.131 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHhhhcCC-CCHHHHHHHHHHHHHHHHhhch
Q psy14676 35 CRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTALLPQLSS-PRQAVRKRTIVALSHLVMSCNL 112 (1827)
Q Consensus 35 ~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll~~L~~-~~~~VRk~Ai~aL~~l~~~~~~ 112 (1827)
.+.++|-|...+..+.++++..-|+.+|..+++-+++...- .+...+++|++.|.. +=-.|-+.+..|+..+....+.
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 57899999999988889999999999999999999886533 233356666666654 3357889999999999988877
Q ss_pred hHHHH--H--HHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Q psy14676 113 QLYTK--L--IDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQ 188 (1827)
Q Consensus 113 ~~~~~--l--~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~ 188 (1827)
..++. + +-.++..+. ...+|.|+...+.+|......=-.|+-+.+|++...++..|...-|+..-++-.++.
T Consensus 289 AiL~AG~l~a~LsylDFFS----i~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d 364 (1051)
T KOG0168|consen 289 AILQAGALSAVLSYLDFFS----IHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIAD 364 (1051)
T ss_pred HHHhcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 65532 1 123333433 347888999999999887543334667799999999998888888877776666655
Q ss_pred hC---CCcccc-chHHHHHHHHHHhccC
Q psy14676 189 RC---PKEITP-HIQSITELCLTYITYD 212 (1827)
Q Consensus 189 ~~---p~e~~p-~l~~ii~~ll~~l~~d 212 (1827)
.. |+.+.. +-..+|.-+.+.+.-.
T Consensus 365 ~f~h~~~kLdql~s~dLi~~~~qLlsvt 392 (1051)
T KOG0168|consen 365 GFQHGPDKLDQLCSHDLITNIQQLLSVT 392 (1051)
T ss_pred hcccChHHHHHHhchhHHHHHHHHHhcC
Confidence 43 111111 1134555555555443
|
|
| >KOG1077|consensus | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.49 Score=59.94 Aligned_cols=390 Identities=14% Similarity=0.160 Sum_probs=190.8
Q ss_pred hccccchhhHHHHHHhhhcccC-CCCchHHHHHHhccCC--hhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhh
Q psy14676 1010 ECQEEGTRNVVAECLGKLTLID-PSNLLPRLQESLKSNS--ALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFL 1086 (1827)
Q Consensus 1010 ~~~e~~vR~~a~e~Lg~L~~~~-~~~llP~L~~~L~s~~--~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~L 1086 (1827)
.++.+.-...|..|+|.++... .+.+-+.|-+.|.+++ .-+|+.++..|-.+....++.+.+- ..
T Consensus 121 ~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~------------~W 188 (938)
T KOG1077|consen 121 SSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPG------------EW 188 (938)
T ss_pred hcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChh------------hH
Confidence 3444444456788888887653 3567777778886654 4577777666666667777776652 57
Q ss_pred hHHHHHhhcCCchhhHHHHHHHHHHHHHHhccC----------------CCCC-C-CCc------chhHHHHHHHHHHHH
Q psy14676 1087 LSPVIASVGDNFYKITAEALLVLQQFVKVIRPL----------------TSPS-S-YDF------APFTSDIYQCTLVRL 1142 (1827)
Q Consensus 1087 ip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~----------------~~~~-~-~~~------~~~l~~l~~~ll~~L 1142 (1827)
...+++.+.|..+.|..++...+..+++...+. ..++ . .++ .||+.-=+--++...
T Consensus 189 ~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~ 268 (938)
T KOG1077|consen 189 AQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY 268 (938)
T ss_pred HHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC
Confidence 788899999999988887777777777642210 0000 0 000 122221111111111
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHH-HHHHHHhcCCCccccc-hhhhhhHhh
Q psy14676 1143 KAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTV-KALTKIAASPLRIDLR-PILTDGIPI 1220 (1827)
Q Consensus 1143 ~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~av-~al~~ia~~~~~~dl~-p~~~~~l~~ 1220 (1827)
- .-.|..+|.+-.+++..++..+.+-.. .+. .......-+.+ .++.-+. ..|-+ ..+..++..
T Consensus 269 p-~~~D~~~r~~l~evl~~iLnk~~~~~~--~k~--------vq~~na~naVLFeaI~l~~----h~D~e~~ll~~~~~~ 333 (938)
T KOG1077|consen 269 P-TPEDPSTRARLNEVLERILNKAQEPPK--SKK--------VQHSNAKNAVLFEAISLAI----HLDSEPELLSRAVNQ 333 (938)
T ss_pred C-CCCCchHHHHHHHHHHHHHhccccCcc--ccc--------hHhhhhHHHHHHHHHHHHH----HcCCcHHHHHHHHHH
Confidence 1 122333333333333333332211000 000 00000000000 0011000 11222 233455666
Q ss_pred hhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcC-CCChhHHHHHHHHHHHHHHhCCCccchhhHH
Q psy14676 1221 LGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVS-ESDLHIAQLTLTLLTSIAKIQPNALVEPAAA 1299 (1827)
Q Consensus 1221 L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~-d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~ 1299 (1827)
|+.++..-+..+|.-+++.+..|+.+-.+ .+.+..=...+...+. +.|-.+|+-++..|-.+|..
T Consensus 334 Lg~fls~rE~NiRYLaLEsm~~L~ss~~s---~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~----------- 399 (938)
T KOG1077|consen 334 LGQFLSHRETNIRYLALESMCKLASSEFS---IDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV----------- 399 (938)
T ss_pred HHHHhhcccccchhhhHHHHHHHHhccch---HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch-----------
Confidence 67777666666777777777766664211 1111111222223343 66777777777777666542
Q ss_pred hhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHh---hhhhhhhhhhHHHHHHhhhcCch-hhHHHHHHHHH
Q psy14676 1300 SILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLG---SIAVGNLQQYVPFVLKEIENQPK-RQYLLLHSLKE 1375 (1827)
Q Consensus 1300 ~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG---~i~~~~l~~~LP~Il~~i~~~~~-~q~~~l~aL~E 1375 (1827)
+..+.++.-+++.+......+|+-.+.... +--+....=|+-.|++.+.-.+. ..--+++=+-.
T Consensus 400 ------------~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQ 467 (938)
T KOG1077|consen 400 ------------SNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQ 467 (938)
T ss_pred ------------hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhhe
Confidence 122456666666666666666665543322 22233344577777776643110 00011222222
Q ss_pred HHhhccccccchhhhhchHH-HHHHHHhhhhcCCchhHHHHHHHHHHHhh---ccCCC----cchHHHHHhhhcCCHHHH
Q psy14676 1376 IISWQSTSTSGVAQLQQFVP-AIWAQLFLHCECQEEGTRNVVAECLGKLT---LIDPS----NLLPRLQESLKSNSALMR 1447 (1827)
Q Consensus 1376 ii~~~~~s~~g~~~L~~~~~-~i~~~L~~~~~~~~e~vR~~aAecLGkL~---~~~p~----~~lP~L~~~l~~~~~~~R 1447 (1827)
++. ..+++.+|.. .++.-|-+. .-.|..-.+++.-||..+ .-+|+ .....|.+.+...++..|
T Consensus 468 iVv-------Nnedlq~yaak~~fe~Lq~~--a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr 538 (938)
T KOG1077|consen 468 IVV-------NNEDLQGYAAKRLFEYLQKP--ACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTR 538 (938)
T ss_pred eEe-------cchhhhHHHHHHHHHHHhhh--HHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHH
Confidence 322 1345555542 233322221 112444555666666555 33343 344566777778889999
Q ss_pred HHHHHHHHHHhhhc
Q psy14676 1448 TTVLTAVKFTISDQ 1461 (1827)
Q Consensus 1448 ~t~l~Alk~~~~~~ 1461 (1827)
...++..-.++...
T Consensus 539 ~lLLtTyiKl~nl~ 552 (938)
T KOG1077|consen 539 ALLLTTYIKLINLF 552 (938)
T ss_pred HHHHHHHHHHHhhC
Confidence 88888776666543
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0048 Score=68.53 Aligned_cols=112 Identities=21% Similarity=0.294 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCC
Q psy14676 51 DVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNK 130 (1827)
Q Consensus 51 ~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~ 130 (1827)
|+.+|..++-++|+++-+++..+.+ .++.+...|.|+++.||+.|+.++.+++..-.-+.-.+++..++..+ .++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~----~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l-~D~ 75 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEP----YLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLL-VDE 75 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHh----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHH-cCC
Confidence 5789999999999999999887755 56677788999999999999999999987533233344556667666 456
Q ss_pred CHHHHHHHHHHHHHHHHH-hchhhHHhHHHHHHHHHhh
Q psy14676 131 STSTNRTYIQCFAAICRQ-AGHRFAEHIERVMPLILKY 167 (1827)
Q Consensus 131 ~~~~r~~ai~~l~~la~~-~~~~~~p~l~~i~p~l~~~ 167 (1827)
++.+|..+..++..+... .+..|.+++.+++-.+-..
T Consensus 76 ~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 76 NPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNC 113 (178)
T ss_pred CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCc
Confidence 789999999999999998 6777877777666554443
|
|
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.14 Score=64.66 Aligned_cols=227 Identities=15% Similarity=0.181 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhc----CCC-CHHHHHHHHHHHHH
Q psy14676 34 VCRRITGKLSTAIEK---QEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQL----SSP-RQAVRKRTIVALSH 105 (1827)
Q Consensus 34 v~~~L~P~Ll~~l~~---~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L----~~~-~~~VRk~Ai~aL~~ 105 (1827)
..+.|+..|+..++. .++..+-...+ -++....+.+.++...+++.+...+ ++| +|.--..-..+++.
T Consensus 23 ~~~~ll~~Lf~~i~~~~s~ENeylMk~iM----Rvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~ 98 (435)
T PF03378_consen 23 FAQQLLQNLFALIEKPGSAENEYLMKCIM----RVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGA 98 (435)
T ss_dssp CHHHHHHHHHHHHHTT-STC-HHHHHHHH----HHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH
Confidence 357788888888855 33433433444 4444455555566666666666554 454 67888888899999
Q ss_pred HHHhhchh-------HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc-hhhHHhHHHHHHHHHhhc-ccCchHHH
Q psy14676 106 LVMSCNLQ-------LYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG-HRFAEHIERVMPLILKYS-REEDDELR 176 (1827)
Q Consensus 106 l~~~~~~~-------~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~-~~~~p~l~~i~p~l~~~~-~~~~delR 176 (1827)
++....+. .-..+++.+..-|+++- .+-.-.++|.++.+.+..+ ..+.+.+..++|.++.-. .+...-+-
T Consensus 99 lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV-~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniP 177 (435)
T PF03378_consen 99 LIRFVCEADPEAVSQFEEALFPPFQEILQQDV-QEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIP 177 (435)
T ss_dssp HHHHS-GGGHH---HHHHHHHHHHHHHHHTT--TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHH
T ss_pred HHHhccCCChhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcC
Confidence 98875532 22345566666666542 3456778999999999888 666667777888777542 22222221
Q ss_pred HHHHHHHHHHHHhCCCccc--cchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCc
Q psy14676 177 EFCLQACEAFVQRCPKEIT--PHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDD 254 (1827)
Q Consensus 177 e~al~ale~~~~~~p~e~~--p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sddd 254 (1827)
....-+.+++++.|..+. +++..++.++.+.+...-| |
T Consensus 178 -alvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~-------D-------------------------------- 217 (435)
T PF03378_consen 178 -ALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAN-------D-------------------------------- 217 (435)
T ss_dssp -HHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTC-------H--------------------------------
T ss_pred -cHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCc-------c--------------------------------
Confidence 223346788888888764 7888999999888765311 0
Q ss_pred cchhhHHHHHHHHHHHHHHHcC-CchhhhHHhhhHHHHhhcC-CCCHhHHHHHHHHHHHH
Q psy14676 255 DMSWKVRRAAAKCLEAIIATRR-DLIGDMYRLVSPPLIARFK-EREENVKSDIFHAYMAL 312 (1827)
Q Consensus 255 D~sWkVRraAak~L~~l~~~~~-~~l~~~~~~v~p~L~~~l~-e~ee~VR~aa~~al~~l 312 (1827)
..+-+.|.+++.+.| +.+.+|++.++-.+..|+. .+-+..+..-+..++.+
T Consensus 218 -------~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~ 270 (435)
T PF03378_consen 218 -------HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLF 270 (435)
T ss_dssp -------HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence 125678999999998 4789999999999999994 45555544444444433
|
CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C. |
| >KOG1078|consensus | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.14 Score=65.55 Aligned_cols=264 Identities=19% Similarity=0.247 Sum_probs=135.1
Q ss_pred hhhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhh
Q psy14676 1187 NEITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPL 1266 (1827)
Q Consensus 1187 ~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~l 1266 (1827)
.|..-..|++++..+..-. ...+...+..|..++......+|-++...|+.++..++..... -=.+|-++
T Consensus 258 ~emV~~EaArai~~l~~~~-----~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~-----cN~elE~l 327 (865)
T KOG1078|consen 258 SEMVIYEAARAIVSLPNTN-----SRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV-----CNLDLESL 327 (865)
T ss_pred hHHHHHHHHHHHhhccccC-----HhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc-----cchhHHhh
Confidence 3444566777666554322 1123345666777777777778888888888888776655332 12356677
Q ss_pred cCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhH---HHHHHHhcCCCCHhHHHHHHHHHhhh
Q psy14676 1267 VSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADL---KQVILNAFTPTSEEVKSAASYTLGSI 1343 (1827)
Q Consensus 1267 l~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l---~~~~l~~~~~~s~eVr~aAa~aLG~i 1343 (1827)
++|.++.+...++..|- +. |... +..-+ ++.|..-+.|++.-|-..|..+|...
T Consensus 328 Itd~NrsIat~AITtLL---KT-----------------G~e~---sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~ 384 (865)
T KOG1078|consen 328 ITDSNRSIATLAITTLL---KT-----------------GTES---SVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLK 384 (865)
T ss_pred hcccccchhHHHHHHHH---Hh-----------------cchh---HHHHHHHHHHHHHHhccccceEEeHHHHHHHHhh
Confidence 78887777766554332 11 1110 11222 23333333333333333333333321
Q ss_pred hhhhhhhhHHHHHHhhhcCc--hhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHH
Q psy14676 1344 AVGNLQQYVPFVLKEIENQP--KRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLG 1421 (1827)
Q Consensus 1344 ~~~~l~~~LP~Il~~i~~~~--~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLG 1421 (1827)
-----..+++++-+.+.+.+ +....+..++.-+|.....+ + ...+..|...+++-+ -+..+..-|+
T Consensus 385 fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds-------K---e~~L~~LCefIEDce--~~~i~~rILh 452 (865)
T KOG1078|consen 385 FPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS-------K---ERGLEHLCEFIEDCE--FTQIAVRILH 452 (865)
T ss_pred ccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcch-------h---hHHHHHHHHHHHhcc--chHHHHHHHH
Confidence 11000113333333333221 11222233333333211000 0 011111111111111 2344444455
Q ss_pred Hhhc-----cCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHH
Q psy14676 1422 KLTL-----IDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKV 1496 (1827)
Q Consensus 1422 kL~~-----~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l 1496 (1827)
.|+. .+|+.|+-++-+.+-=+++.+|..+++|+..+... ++.++ ..+
T Consensus 453 lLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~-----~~~l~-----------------------~sI 504 (865)
T KOG1078|consen 453 LLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQ-----DVVLL-----------------------PSI 504 (865)
T ss_pred HHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcC-----CCCcc-----------------------ccH
Confidence 5554 34677888888887778899999999999888722 22221 234
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhhhhh
Q psy14676 1497 VKMLLRLLEDKNGEVQNLAVKCLGPLV 1523 (1827)
Q Consensus 1497 ~~~ll~~l~D~~~~Vr~~a~~~Lg~L~ 1523 (1827)
.-.+.+++.|+|..||..|.-.|..+-
T Consensus 505 ~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 505 LVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 456678999999999999988887776
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.015 Score=66.94 Aligned_cols=260 Identities=15% Similarity=0.220 Sum_probs=165.8
Q ss_pred hhHHHHHHhhhh---hhhHHHHHHHHHHHhcCCCccccch-hhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCc
Q psy14676 1176 VCLPILLDRLRN---EITRLTTVKALTKIAASPLRIDLRP-ILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAI 1251 (1827)
Q Consensus 1176 ~lL~~Ll~~L~~---e~tR~~av~al~~ia~~~~~~dl~p-~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l 1251 (1827)
-+.|.+++.+.+ +.-...|.-+++.|+..+.. +-.- .-...+|.+..+|...+.++|.-++-||+.++--... .
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~-QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~-~ 191 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQ-QTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEG-C 191 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCccc-ceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchh-H
Confidence 367788888743 33478999999999875431 1010 1145789999999999999999999999976542111 0
Q ss_pred ChH-hHHHHHHHhhhhcCCCChh--HHHHHHHHHHHHHHhCCCccchhhHHhhhhhccccc--CCCchhhHHHHHHHhcC
Q psy14676 1252 STE-MLNKVTVELAPLVSESDLH--IAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHT--DLTSVADLKQVILNAFT 1326 (1827)
Q Consensus 1252 ~~~-~~~~ll~~L~~ll~d~D~~--l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~--~~~~~~~l~~~~l~~~~ 1326 (1827)
..- +-.+++..+..++..+-.| +...+--.|+.+|+ |+.- +++.+...+|++.+.+.
T Consensus 192 RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR------------------GknP~P~w~~isqalpiL~KLiy 253 (526)
T COG5064 192 RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR------------------GKNPPPDWSNISQALPILAKLIY 253 (526)
T ss_pred HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC------------------CCCCCCchHHHHHHHHHHHHHHh
Confidence 000 1112344444555554443 33444445666666 3332 23345678999999999
Q ss_pred CCCHhHHHHHHHHHhhhhhhh-------hh-hhHHHHHHhhhc-CchhhHHHHHHHHHHHhhccccccchhh-hh-chHH
Q psy14676 1327 PTSEEVKSAASYTLGSIAVGN-------LQ-QYVPFVLKEIEN-QPKRQYLLLHSLKEIISWQSTSTSGVAQ-LQ-QFVP 1395 (1827)
Q Consensus 1327 ~~s~eVr~aAa~aLG~i~~~~-------l~-~~LP~Il~~i~~-~~~~q~~~l~aL~Eii~~~~~s~~g~~~-L~-~~~~ 1395 (1827)
+.++||-.-|..|+.-+..|. ++ -..+-+++.+.. +.+.|.-.+.+++-|+...... ..- +. .+++
T Consensus 254 s~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~Q---TqviI~~G~L~ 330 (526)
T COG5064 254 SRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQ---TQVIINCGALK 330 (526)
T ss_pred hcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccc---eehheecccHH
Confidence 999999999988877644332 11 122445555443 4456777888888886511100 000 11 1333
Q ss_pred HHHHHHhhhhcCCchhHHHHHHHHHHHhhccCC--------CcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcC
Q psy14676 1396 AIWAQLFLHCECQEEGTRNVVAECLGKLTLIDP--------SNLLPRLQESLKSNSALMRTTVLTAVKFTISDQM 1462 (1827)
Q Consensus 1396 ~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p--------~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~ 1462 (1827)
.+ ..| +.+..+.+|.-++-++..++..+. ..++|.|..++.+.++.+|.-+.-|+....++..
T Consensus 331 a~-~~l---Ls~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~ 401 (526)
T COG5064 331 AF-RSL---LSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGL 401 (526)
T ss_pred HH-HHH---hcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 32 222 346667899999988988887664 3688999999999999999888889888877643
|
|
| >KOG2021|consensus | Back alignment and domain information |
|---|
Probab=97.16 E-value=1.5 Score=56.28 Aligned_cols=332 Identities=14% Similarity=0.142 Sum_probs=182.1
Q ss_pred HHHHHHHHHHH-------HHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy14676 34 VCRRITGKLST-------AIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHL 106 (1827)
Q Consensus 34 v~~~L~P~Ll~-------~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l 106 (1827)
.+..-+|.|.+ .-++-.++++...+|+++|..+.-.--.+- .....++.+...|. -..+|..|+.|+-.+
T Consensus 182 MR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLI-aNd~f~nLLy~fl~--ieelR~aac~cilai 258 (980)
T KOG2021|consen 182 MRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLI-ANDYFLNLLYKFLN--IEELRIAACNCILAI 258 (980)
T ss_pred HHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhh-hchhHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 34445666642 223333788999999999988765422111 13456777777776 568999999999887
Q ss_pred HHh-hchhHHHHHHHHHHHhc------cCC--CCHHHHHHHHHHHHHHH--------HH-------hchhhHHhHHHHHH
Q psy14676 107 VMS-CNLQLYTKLIDFLLEGL------TTN--KSTSTNRTYIQCFAAIC--------RQ-------AGHRFAEHIERVMP 162 (1827)
Q Consensus 107 ~~~-~~~~~~~~l~~~ll~~L------~~~--~~~~~r~~ai~~l~~la--------~~-------~~~~~~p~l~~i~p 162 (1827)
+.- +.+-.--+++..+-+.+ +.+ .+.+.-...-..+...+ +- ........+-.++|
T Consensus 259 VsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vp 338 (980)
T KOG2021|consen 259 VSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVP 338 (980)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHH
Confidence 764 32221112333331211 111 22222222111111111 11 01122334456899
Q ss_pred HHHhhcccCchHHHHHHHHHHHHHHH---hCC---CccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCc
Q psy14676 163 LILKYSREEDDELREFCLQACEAFVQ---RCP---KEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTE 236 (1827)
Q Consensus 163 ~l~~~~~~~~delRe~al~ale~~~~---~~p---~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~ 236 (1827)
++++++++++|++--.-+..+-.++. +.+ ..-.-++..++...++-|+|||.|-.+|+-. +
T Consensus 339 yllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~t-----------g-- 405 (980)
T KOG2021|consen 339 YLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVT-----------G-- 405 (980)
T ss_pred HHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCC-----------C--
Confidence 99999999888876555555533333 333 2233578889999999999998872221100 0
Q ss_pred ccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhh
Q psy14676 237 EEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGT 316 (1827)
Q Consensus 237 ~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~ 316 (1827)
+++++.--.+|+-----++++....|+++.......+..-...-++..|..-+.|+.-+-.+.+.+
T Consensus 406 --------------~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l 471 (980)
T KOG2021|consen 406 --------------DEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECL 471 (980)
T ss_pred --------------chHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcc
Confidence 001112225777665566777766676555444444444334446666766666665555555444
Q ss_pred cccCCCCCCCCCCCC-----------------CCCChH---hhH-------------HhhhHHHHHHHH--HHhccCCHh
Q psy14676 317 RTFSPLTPSDPNQMD-----------------QEDSPL---CLL-------------STQVPSLVKALQ--CQLREKSIR 361 (1827)
Q Consensus 317 ~~~~~~~~~~~~~~~-----------------~~~~~~---~~l-------------~~~lp~Iv~~l~--~~L~d~~~~ 361 (1827)
........+ .+.+. ..++.. -.+ .+.+|.++.+.+ ++|..++.+
T Consensus 472 ~~~~~~~ns-gd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~ 550 (980)
T KOG2021|consen 472 KNNYFGLNS-GDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNEN 550 (980)
T ss_pred ccccccccC-ccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccc
Confidence 321100000 00000 000000 000 124666666555 357788899
Q ss_pred HHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHh
Q psy14676 362 TRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVA 396 (1827)
Q Consensus 362 vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L 396 (1827)
||.-+|-++.....-+...+-+++..++.-|...|
T Consensus 551 Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL 585 (980)
T KOG2021|consen 551 VRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLL 585 (980)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888877777778888888887777
|
|
| >KOG4524|consensus | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.067 Score=70.04 Aligned_cols=308 Identities=15% Similarity=0.100 Sum_probs=164.5
Q ss_pred HHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh----HHHHHHHHHHHhccCC-CC
Q psy14676 57 EALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ----LYTKLIDFLLEGLTTN-KS 131 (1827)
Q Consensus 57 ~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~----~~~~l~~~ll~~L~~~-~~ 131 (1827)
-+++.++.++.-.|..+.+..-..+-.++..+.++++.|+..|..|+..++..|+-. ++..-.+.++..++.. ..
T Consensus 567 i~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~ 646 (1014)
T KOG4524|consen 567 IVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNT 646 (1014)
T ss_pred hhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhcc
Confidence 456777777777777766655555556677788999999999999999999988642 3444456666665221 11
Q ss_pred HHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCC----C-ccccchH-HHHHHH
Q psy14676 132 TSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCP----K-EITPHIQ-SITELC 205 (1827)
Q Consensus 132 ~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p----~-e~~p~l~-~ii~~l 205 (1827)
..+-..+-+.+.-+.+.......||+++++..++..+..-..---+.-++-+.++.+... + ++-.++. ......
T Consensus 647 ~~~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~~~~~~~~ll~s~ik~~~~~~~~~~il~~~~d~~~~~~ 726 (1014)
T KOG4524|consen 647 SGMSPRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGYSCLQFFQLLHSIIKEMKKKYINDEILGHIADQHISQS 726 (1014)
T ss_pred CCCCchhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHH
Confidence 112233446667777777777788899988888877643211100111122233333222 1 1111110 000000
Q ss_pred HHHhccCCCCCccccc---ccCCC-C--------CC-CCCCCCcccCCCCCCC---CCCCCCCCccchhhHHHHHHHHHH
Q psy14676 206 LTYITYDPNYNYEDEE---EGLGG-E--------GG-GEGMDTEEEDGEDEGE---DDNEYSDDDDMSWKVRRAAAKCLE 269 (1827)
Q Consensus 206 l~~l~~dpn~~~~ddd---~~~~~-~--------~~-~~~~d~~~~d~dde~e---~~~e~sdddD~sWkVRraAak~L~ 269 (1827)
-+.+..-|.-.+++++ ++..+ + .+ +-.+++.++.++.+.| +.+++-|.+-.
T Consensus 727 ~k~l~e~p~~~~e~~n~~~d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~e~edens~~~d~ep~------------- 793 (1014)
T KOG4524|consen 727 TKVLNELPTQVKELINDENDLKDDLEPSNFEKDFASKLREPDDNEEPEEREEEVEDENSEYTDTEPI------------- 793 (1014)
T ss_pred HHHhhcchhhHHHhhhhHHHHHHhhhhHHHHHHhhhhccCCCcccCcCCCCCCccccccCCCCCCCC-------------
Confidence 0000000100000000 00000 0 00 0011110000000000 11112111000
Q ss_pred HHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHH
Q psy14676 270 AIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVK 349 (1827)
Q Consensus 270 ~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~ 349 (1827)
++.-..+..+|+..-+..+.+..-.+|.+|+..+...+--... ....+-+.+-+..|
T Consensus 794 ------~~~qv~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~-----------------~~n~LlPlvhq~W~ 850 (1014)
T KOG4524|consen 794 ------LPDQVKIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLAT-----------------YHNLLLPLVHQTWP 850 (1014)
T ss_pred ------CChHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhc-----------------cchhHhHHHHhhhh
Confidence 0111112334444444556777778899999888654321111 11356667777788
Q ss_pred HHHHHhccCCHhHHHHHHHHHHHHHHhCcccc-cCchhhHHHHHHHHhhhhh
Q psy14676 350 ALQCQLREKSIRTRQDCLALLRELVQTLPGCL-APSLPALIPDVTSVAEWDE 400 (1827)
Q Consensus 350 ~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l-~~~l~~Llp~i~~~L~~~~ 400 (1827)
.++..++++++-+.+-|++++..+....++.+ +.++..++|.+...+++..
T Consensus 851 ~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dvlP~l~~~~~~~~ 902 (1014)
T KOG4524|consen 851 SVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLEDVLPWLKHLCQDSF 902 (1014)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999988855 6788999999998886654
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.003 Score=70.13 Aligned_cols=107 Identities=26% Similarity=0.374 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHHhhccCCC---cchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhccc
Q psy14676 1410 EGTRNVVAECLGKLTLIDPS---NLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSI 1486 (1827)
Q Consensus 1410 e~vR~~aAecLGkL~~~~p~---~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~ 1486 (1827)
..+|+.+..++|-|+.-+|. .++|.+...|+++++.+|.+++..+..++....-.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik---------------------- 59 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK---------------------- 59 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----------------------
Confidence 45899999999999999985 78999999999999999999999999999643111
Q ss_pred ccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhc
Q psy14676 1487 KLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMV 1543 (1827)
Q Consensus 1487 ~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~ 1543 (1827)
+-..++..++.++.|+++.||..|..++..+.+...++.....+..++..+.
T Consensus 60 -----~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 60 -----VKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLN 111 (178)
T ss_pred -----ehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 1124557788899999999999999999999987666666666666655443
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0021 Score=69.76 Aligned_cols=153 Identities=18% Similarity=0.280 Sum_probs=99.1
Q ss_pred CCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhh
Q psy14676 755 PGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNL 834 (1827)
Q Consensus 755 ~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r 834 (1827)
|+..|+++|+.|++.+++... ...-.++++++|.++ ++++..-..+.+-...-.. .+....
T Consensus 4 PY~~yP~LL~~L~~iLk~e~s--~~iR~E~lr~lGilG-ALDP~~~k~~~~~~~~~~~-~~~~~~--------------- 64 (160)
T PF11865_consen 4 PYLDYPELLDILLNILKTEQS--QSIRREALRVLGILG-ALDPYKHKSIQKSLDSKSS-ENSNDE--------------- 64 (160)
T ss_pred hHHHhHHHHHHHHHHHHhCCC--HHHHHHHHHHhhhcc-ccCcHHHhcccccCCcccc-cccccc---------------
Confidence 678899999999999976421 333447789999877 5554322111110000000 000000
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcCCC-ChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHH
Q psy14676 835 QLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNK-STSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDEL 913 (1827)
Q Consensus 835 ~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~~~-~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~v 913 (1827)
.....-+..-....++++|..+.-.-++...+|+ -+..+..+++++..+.++.|.+..+|+++|+|.+++.++..++..
T Consensus 65 ~~~~~l~~~~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~ 144 (160)
T PF11865_consen 65 STDISLPMMGISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSL 144 (160)
T ss_pred chhhHHhhccCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHH
Confidence 0000001111112577888887666666544443 456677999999999999999999999999999999999888899
Q ss_pred HHHHHHHHHHHHh
Q psy14676 914 REFCLQACEAFVQ 926 (1827)
Q Consensus 914 re~al~Ale~~v~ 926 (1827)
||+-++.+..++.
T Consensus 145 ~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 145 REFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888765
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >KOG0567|consensus | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.017 Score=65.30 Aligned_cols=231 Identities=21% Similarity=0.240 Sum_probs=136.7
Q ss_pred hhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCch
Q psy14676 957 NAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLL 1036 (1827)
Q Consensus 957 ~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~ll 1036 (1827)
+.|.+.++..|....|.+|.... ...+|.+...+. .++.++-||--|+++||.+. -..++
T Consensus 43 ka~~d~s~llkhe~ay~LgQ~~~---------------~~Av~~l~~vl~--desq~pmvRhEAaealga~~---~~~~~ 102 (289)
T KOG0567|consen 43 KAFIDDSALLKHELAYVLGQMQD---------------EDAVPVLVEVLL--DESQEPMVRHEAAEALGAIG---DPESL 102 (289)
T ss_pred Hhcccchhhhccchhhhhhhhcc---------------chhhHHHHHHhc--ccccchHHHHHHHHHHHhhc---chhhH
Confidence 45555556666667777764211 122333433332 24566778888999999988 35677
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHhcc-c---cccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHH
Q psy14676 1037 PRLQESLKSNSALMRTTHQSNQTFNVIIQR-N---DIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQF 1112 (1827)
Q Consensus 1037 P~L~~~L~s~~~~~R~~a~~~L~~l~~~~~-~---~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~l 1112 (1827)
+.+.+..+++-..+|++...++..+--... + ...|| .| ..+--| .-..+..++|.+-+..-..+
T Consensus 103 ~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~---~S-----vdPa~p----~~~ssv~~lr~~lld~t~~l 170 (289)
T KOG0567|consen 103 EILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPY---IS-----VDPAPP----ANLSSVHELRAELLDETKPL 170 (289)
T ss_pred HHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCcc---cc-----CCCCCc----cccccHHHHHHHHHhcchhH
Confidence 888888888888899987777775532221 1 12233 00 000000 00001123344444433334
Q ss_pred HHHhccCC---CCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhh
Q psy14676 1113 VKVIRPLT---SPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEI 1189 (1827)
Q Consensus 1113 v~~l~~~~---~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~ 1189 (1827)
..-.+++. ..++ +.-+..+.+.+. +.+.-.|-.+..++|++-+.+ -++.+...|.+.-.+..
T Consensus 171 ~~Ry~amF~LRn~g~-------EeaI~al~~~l~--~~SalfrhEvAfVfGQl~s~~------ai~~L~k~L~d~~E~pM 235 (289)
T KOG0567|consen 171 FERYRAMFYLRNIGT-------EEAINALIDGLA--DDSALFRHEVAFVFGQLQSPA------AIPSLIKVLLDETEHPM 235 (289)
T ss_pred HHHHhhhhHhhccCc-------HHHHHHHHHhcc--cchHHHHHHHHHHHhhccchh------hhHHHHHHHHhhhcchH
Confidence 33333321 1111 223445556666 556777888888888876432 13344444444444455
Q ss_pred hHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHH
Q psy14676 1190 TRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLV 1245 (1827)
Q Consensus 1190 tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~ 1245 (1827)
.|..|++|||.|+. .++++.|..++.+..+-+|.++..+|+.+--
T Consensus 236 VRhEaAeALGaIa~-----------e~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 236 VRHEAAEALGAIAD-----------EDCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHHHHHhhcC-----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 69999999999985 5788999999999999999999999986544
|
|
| >KOG1061|consensus | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.35 Score=62.48 Aligned_cols=410 Identities=18% Similarity=0.202 Sum_probs=227.8
Q ss_pred hhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhc
Q psy14676 893 EHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASY 972 (1827)
Q Consensus 893 ~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~ 972 (1827)
.-+..+.|-++++++-.|-+++-.+ ...+.++.. ..|.+. -.....+...+.+++..+|..|.+
T Consensus 45 ~DvSslF~dvvk~~~T~dlelKKlv----yLYl~nYa~-~~P~~a-----------~~avnt~~kD~~d~np~iR~lAlr 108 (734)
T KOG1061|consen 45 KDVSSLFPDVVKCMQTRDLELKKLV----YLYLMNYAK-GKPDLA-----------ILAVNTFLKDCEDPNPLIRALALR 108 (734)
T ss_pred cchHhhhHHHHhhcccCCchHHHHH----HHHHHHhhc-cCchHH-----------HhhhhhhhccCCCCCHHHHHHHhh
Confidence 3466677888888887665543221 111111111 111110 001123345677778888888888
Q ss_pred ccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCC-----CCchHHHHHHhccCC
Q psy14676 973 TLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDP-----SNLLPRLQESLKSNS 1047 (1827)
Q Consensus 973 ~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~-----~~llP~L~~~L~s~~ 1047 (1827)
++|... ...+...+..-+.++++++...+|..++-|..++....+ ..+++.+...+.+++
T Consensus 109 tm~~l~---------------v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~ 173 (734)
T KOG1061|consen 109 TMGCLR---------------VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSN 173 (734)
T ss_pred ceeeEe---------------ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCC
Confidence 776531 122334455566677799999999999999999887754 458889999999888
Q ss_pred hhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCc
Q psy14676 1048 ALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDF 1127 (1827)
Q Consensus 1048 ~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~ 1127 (1827)
+.+-..|+.+|..+....++....+ ...+++..++.++.+...=-+.+.+.. +.... | .+-
T Consensus 174 p~VVAnAlaaL~eI~e~~~~~~~~~---------l~~~~~~~lL~al~ec~EW~qi~IL~~---l~~y~-p------~d~ 234 (734)
T KOG1061|consen 174 PMVVANALAALSEIHESHPSVNLLE---------LNPQLINKLLEALNECTEWGQIFILDC---LAEYV-P------KDS 234 (734)
T ss_pred chHHHHHHHHHHHHHHhCCCCCccc---------ccHHHHHHHHHHHHHhhhhhHHHHHHH---HHhcC-C------CCc
Confidence 9999999999996655544321111 134555555555543221111112221 22111 1 111
Q ss_pred chhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhh-hhHHHHHHHHHHHhcCCC
Q psy14676 1128 APFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNE-ITRLTTVKALTKIAASPL 1206 (1827)
Q Consensus 1128 ~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e-~tR~~av~al~~ia~~~~ 1206 (1827)
.-..++.+-+..++. .....|--.|...+-+++..+...-...+..+-|.++..+..+ ..-..+++-+..+..+..
T Consensus 235 -~ea~~i~~r~~p~Lq--h~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p 311 (734)
T KOG1061|consen 235 -REAEDICERLTPRLQ--HANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRP 311 (734)
T ss_pred -hhHHHHHHHhhhhhc--cCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhCh
Confidence 234455555555555 3334443444444444443332211122233333333333222 235666666666654321
Q ss_pred ccccchhhhhhHhhhhhhhcchh-HHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHH
Q psy14676 1207 RIDLRPILTDGIPILGSFLRKNQ-RALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSI 1285 (1827)
Q Consensus 1207 ~~dl~p~~~~~l~~L~~~Lrk~~-r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l 1285 (1827)
. ++. .....=|.+.++ -.++..=++++..++. ++.+..++.+|...-++-|.+...-++.+++.+
T Consensus 312 ~-----~~~--~~~~~Ff~kynDPiYvK~eKleil~~la~-------~~nl~qvl~El~eYatevD~~fvrkaIraig~~ 377 (734)
T KOG1061|consen 312 E-----ILK--VEIKVFFCKYNDPIYVKLEKLEILIELAN-------DANLAQVLAELKEYATEVDVDFVRKAVRAIGRL 377 (734)
T ss_pred H-----HHH--hHhHeeeeecCCchhhHHHHHHHHHHHhh-------HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhh
Confidence 1 111 111112344555 2366666677766654 234666899999999999999999999999988
Q ss_pred HHhCCCcc--ch--------------hhHHhhhhhcccccCCCchhhHHHHHHHhcCC-CCHhHHHHHHHHHhhh--hhh
Q psy14676 1286 AKIQPNAL--VE--------------PAAASILPQIGRHTDLTSVADLKQVILNAFTP-TSEEVKSAASYTLGSI--AVG 1346 (1827)
Q Consensus 1286 ~~~~~~~~--~~--------------~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~-~s~eVr~aAa~aLG~i--~~~ 1346 (1827)
+....+.- +. .++...+..++|+++..+ ..+.+++-..+.+ ..++.|.+...-+|+- ...
T Consensus 378 aik~e~~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~-~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~ 456 (734)
T KOG1061|consen 378 AIKAEQSNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY-ESVVAILCENLDSLQEPEAKAALIWILGEYAERIE 456 (734)
T ss_pred hhhhhhhhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch-hhhhhhhcccccccCChHHHHHHHHHHhhhhhccC
Confidence 87655430 00 012223345667764332 4566666666655 4688999999999984 456
Q ss_pred hhhhhHHHHHHhhhcCc-hhhHHHH
Q psy14676 1347 NLQQYVPFVLKEIENQP-KRQYLLL 1370 (1827)
Q Consensus 1347 ~l~~~LP~Il~~i~~~~-~~q~~~l 1370 (1827)
+...+|-.+++.+.+.+ ..|.-+|
T Consensus 457 ~a~elL~~f~en~~dE~~~Vql~LL 481 (734)
T KOG1061|consen 457 NALELLESFLENFKDETAEVQLELL 481 (734)
T ss_pred cHHHHHHHHHhhcccchHHHHHHHH
Confidence 77778888888776643 3444444
|
|
| >KOG4653|consensus | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.023 Score=73.02 Aligned_cols=198 Identities=15% Similarity=0.201 Sum_probs=131.2
Q ss_pred HHHHhhhcC--CCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCccccc
Q psy14676 858 DFLLEGLTT--NKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPH 935 (1827)
Q Consensus 858 ~~l~~~l~~--~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~ 935 (1827)
+.+.+.+.. ++-+++|.+.++++..+.+.-.+.=.-....|+...++.+.|+|..|-..|.++.-.+++.++..|.|-
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~d 806 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPD 806 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHH
Confidence 334444433 677899999999999999866554445556788888888888888876666665555555554444443
Q ss_pred cccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccc
Q psy14676 936 IQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEG 1015 (1827)
Q Consensus 936 l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~ 1015 (1827)
+.+ .|.... +....+
T Consensus 807 L~e-------------------~Y~s~k----------------------------------------------~k~~~d 821 (982)
T KOG4653|consen 807 LSE-------------------EYLSEK----------------------------------------------KKLQTD 821 (982)
T ss_pred HHH-------------------HHHhcc----------------------------------------------cCCCcc
Confidence 221 110000 000011
Q ss_pred hhhHHHHHHhhhcccCCCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhc
Q psy14676 1016 TRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVG 1095 (1827)
Q Consensus 1016 vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~ 1095 (1827)
.|-.++|+++++ ....++.+..| ...|+..++.+++
T Consensus 822 ~~lkVGEai~k~----------------------------------~qa~Gel~~~y----------~~~Li~tfl~gvr 857 (982)
T KOG4653|consen 822 YRLKVGEAILKV----------------------------------AQALGELVFKY----------KAVLINTFLSGVR 857 (982)
T ss_pred ceehHHHHHHHH----------------------------------HHHhccHHHHH----------HHHHHHHHHHhcC
Confidence 122233333332 22333333334 8899999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhh
Q psy14676 1096 DNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKS 1172 (1827)
Q Consensus 1096 D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~ 1172 (1827)
|+....|+.++..+|.+....+- ....++.+++..++.-.. .|...-||++|++.+..++..+|..+-|
T Consensus 858 epd~~~RaSS~a~lg~Lcq~~a~-------~vsd~~~ev~~~Il~l~~-~d~s~~vRRaAv~li~~lL~~tg~dlLp 926 (982)
T KOG4653|consen 858 EPDHEFRASSLANLGQLCQLLAF-------QVSDFFHEVLQLILSLET-TDGSVLVRRAAVHLLAELLNGTGEDLLP 926 (982)
T ss_pred CchHHHHHhHHHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHHc-cCCchhhHHHHHHHHHHHHhccchhhHH
Confidence 99888899999999999987652 223478888888877665 6888999999999999999999876555
|
|
| >KOG4413|consensus | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.32 Score=56.18 Aligned_cols=349 Identities=18% Similarity=0.220 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCc-cccccccccccCCcchhhhhHH
Q psy14676 875 TYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKE-ITPHIQSIGRHTDLTSVADLKQ 953 (1827)
Q Consensus 875 ~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~-i~p~l~~i~~~~~~s~~~~L~~ 953 (1827)
..++++..|.+.... ....++++|-+-.++-.++..|+-.++..++.+++.|+.. +...+- +. -..+.+
T Consensus 62 lcVscLERLfkakeg--ahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseill-vv-------Naeilk 131 (524)
T KOG4413|consen 62 LCVSCLERLFKAKEG--AHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILL-VV-------NAEILK 131 (524)
T ss_pred hHHHHHHHHHhhccc--hhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHH-Hh-------hhhHHH
Confidence 378888888876332 2335678888888999899999999999999988888742 221110 00 023445
Q ss_pred HHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhH-----------HHH
Q psy14676 954 VILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNV-----------VAE 1022 (1827)
Q Consensus 954 ~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~-----------a~e 1022 (1827)
+++.....++.++-.++..++.++ ..+|..++.+|..---+....|+. +.+
T Consensus 132 lildcIggeddeVAkAAiesikri------------------alfpaaleaiFeSellDdlhlrnlaakcndiaRvRVle 193 (524)
T KOG4413|consen 132 LILDCIGGEDDEVAKAAIESIKRI------------------ALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLE 193 (524)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHH------------------HhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHH
Confidence 555555555555544444332221 112333333332211111222322 234
Q ss_pred HHhhhcccCC--------CCchHHHHHHhccC-ChhhHHHHHHHHH-HHHHhccccccccccchhhhhhhhhhhhHHHHH
Q psy14676 1023 CLGKLTLIDP--------SNLLPRLQESLKSN-SALMRTTHQSNQT-FNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIA 1092 (1827)
Q Consensus 1023 ~Lg~L~~~~~--------~~llP~L~~~L~s~-~~~~R~~a~~~L~-~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~ 1092 (1827)
.+-++..+.| ..++..+..-+++. +.-++..++-+.. .+..+.+..|.+. ++ +..++-.|+.
T Consensus 194 LIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQ---eg-----lIdlicnIIs 265 (524)
T KOG4413|consen 194 LIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQ---EG-----LIDLICNIIS 265 (524)
T ss_pred HHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcch---hh-----HHHHHHHHhh
Confidence 4444444433 23677777777774 4567777777777 4445545444443 12 3334444444
Q ss_pred hh-cCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh-h-hh
Q psy14676 1093 SV-GDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNL-G-DY 1169 (1827)
Q Consensus 1093 ~l-~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~-g-~~ 1169 (1827)
+. .|++.+.|. +--++.+.....-.+ ...+..-..+..-++..++.+..+| +...++|+.++|.+-+++ | +.
T Consensus 266 GadsdPfekfra--lmgfgkffgkeaimd-vseeaicealiiaidgsfEmiEmnD--pdaieaAiDalGilGSnteGadl 340 (524)
T KOG4413|consen 266 GADSDPFEKFRA--LMGFGKFFGKEAIMD-VSEEAICEALIIAIDGSFEMIEMND--PDAIEAAIDALGILGSNTEGADL 340 (524)
T ss_pred CCCCCcHHHHHH--HHHHHHHhcchHHhh-cCHHHHHHHHHHHHHhhHHhhhcCC--chHHHHHHHHHHhccCCcchhHH
Confidence 33 466666653 222222221100000 0000000111122233444555444 456899999999998877 3 23
Q ss_pred hhhhhhhhHHHHHHhhhhhhh---HHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHh
Q psy14676 1170 LKSELPVCLPILLDRLRNEIT---RLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVN 1246 (1827)
Q Consensus 1170 l~~~l~~lL~~Ll~~L~~e~t---R~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~ 1246 (1827)
+...-++....++.+..+.+. ...++++++.|+..... . -++.+. .|.+..+|-.-+.++.
T Consensus 341 llkTgppaaehllarafdqnahakqeaaihaLaaIagelrl---k--peqitD------gkaeerlrclifdaaa----- 404 (524)
T KOG4413|consen 341 LLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRL---K--PEQITD------GKAEERLRCLIFDAAA----- 404 (524)
T ss_pred HhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccC---C--hhhccc------cHHHHHHHHHHHHHHh-----
Confidence 333444455666666543332 67889999998864210 0 011111 1233334444444442
Q ss_pred CCCCcChH-hHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH
Q psy14676 1247 YPSAISTE-MLNKVTVELAPLVSESDLHIAQLTLTLLTSIAK 1287 (1827)
Q Consensus 1247 ~~~~l~~~-~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~ 1287 (1827)
.+.+++|. .. ..+++.....++-.++..++.++.
T Consensus 405 qstkldPleLF-------lgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 405 QSTKLDPLELF-------LGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred hccCCChHHHH-------HHHHcCCChhhHHHHHHHHHHHHc
Confidence 23446652 22 233445566777777887777653
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0052 Score=59.42 Aligned_cols=86 Identities=19% Similarity=0.267 Sum_probs=63.9
Q ss_pred hHHHHHhh-hcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchH
Q psy14676 1432 LPRLQESL-KSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGE 1510 (1827)
Q Consensus 1432 lP~L~~~l-~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~ 1510 (1827)
+|.|.+.+ +++++.+|..++.++...-. ..++|.+..+++|+++.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------------------------------~~~~~~L~~~l~d~~~~ 46 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD----------------------------------PEAIPALIELLKDEDPM 46 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH----------------------------------HHHHHHHHHHHTSSSHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------------------------------HhHHHHHHHHHcCCCHH
Confidence 47788888 78899999888877773321 13568999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHH
Q psy14676 1511 VQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVY 1565 (1827)
Q Consensus 1511 Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l 1565 (1827)
||..|+.+||.+. ....+..+...+.++++. .||+.|..+|
T Consensus 47 vr~~a~~aL~~i~-------~~~~~~~L~~~l~~~~~~-------~vr~~a~~aL 87 (88)
T PF13646_consen 47 VRRAAARALGRIG-------DPEAIPALIKLLQDDDDE-------VVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHHHCCH-------HHHTHHHHHHHHTC-SSH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-------CHHHHHHHHHHHcCCCcH-------HHHHHHHhhc
Confidence 9999999999984 234555555555555443 7899988876
|
|
| >KOG0946|consensus | Back alignment and domain information |
|---|
Probab=96.74 E-value=3.4 Score=53.66 Aligned_cols=61 Identities=16% Similarity=0.257 Sum_probs=49.0
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhh---hhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcc
Q psy14676 437 SWKVRRAAAKCLEAIIATRRDLIG---DMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTR 497 (1827)
Q Consensus 437 ~w~vr~~a~~~l~~l~~~~~~~f~---~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g 497 (1827)
.+.||..+++.+..+..+.|.-+. -.++.-++.++..+.|..+-||-+++--+.+|.+..+
T Consensus 135 DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~ 198 (970)
T KOG0946|consen 135 DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNS 198 (970)
T ss_pred chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCc
Confidence 477999999999999998883333 2345667888999999999999999998888886543
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.049 Score=65.76 Aligned_cols=188 Identities=12% Similarity=0.077 Sum_probs=125.9
Q ss_pred ccCChhhHHHHHHHHH-HHHHhc-cccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCC
Q psy14676 1044 KSNSALMRTTHQSNQT-FNVIIQ-RNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTS 1121 (1827)
Q Consensus 1044 ~s~~~~~R~~a~~~L~-~l~~~~-~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~ 1121 (1827)
...+.+.|+.++..+. .+..+. .+.+..+ ..+|+..+.++++-...+-+..|+++++-++-.+.+
T Consensus 53 ~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~----------~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~--- 119 (309)
T PF05004_consen 53 TEKSSSTREAALEALIRALSSRYLPDFVEDR----------RETLLDALLKSLKKGKSEEQALAARALALLALTLGA--- 119 (309)
T ss_pred HhcCHHHHHHHHHHHHHHHHhcccHHHHHHH----------HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCC---
Confidence 4455789999999888 443332 2333333 778999999999766656667788888887755532
Q ss_pred CCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhh--hhhhhHHHHHHh--hh--h--------
Q psy14676 1122 PSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKS--ELPVCLPILLDR--LR--N-------- 1187 (1827)
Q Consensus 1122 ~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~--~l~~lL~~Ll~~--L~--~-------- 1187 (1827)
+.+-...+..+.+.+...+.+......+|..++.|||.+....+..... ..-.++..+... .+ .
T Consensus 120 --g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 120 --GEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAE 197 (309)
T ss_pred --CccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCC
Confidence 2333455667777776766655456678889999999987766543222 122444422221 11 1
Q ss_pred --hhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHh
Q psy14676 1188 --EITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVN 1246 (1827)
Q Consensus 1188 --e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~ 1246 (1827)
.....+|+.+++-++.......+...+...++.|..+|...+..+|.++-++|..+...
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 12378899999988864433234556677899999999999999999999999877653
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG0168|consensus | Back alignment and domain information |
|---|
Probab=96.68 E-value=1.7 Score=56.62 Aligned_cols=192 Identities=13% Similarity=0.156 Sum_probs=115.2
Q ss_pred hHHHHHHhccC-ChhhHHHHHHHHH-HHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCc-hhhHHHHHHHHHHH
Q psy14676 1036 LPRLQESLKSN-SALMRTTHQSNQT-FNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNF-YKITAEALLVLQQF 1112 (1827)
Q Consensus 1036 lP~L~~~L~s~-~~~~R~~a~~~L~-~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~-~~V~~eAl~~l~~l 1112 (1827)
+-.|++.++.. +......++.-|+ -+.....+.+..+ -+..++|.+++.++++. +.+.--|++++..+
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~f---------pv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl 239 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGF---------PVKSLVPVLVALLSHEHNFDIMLLACRALTYL 239 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccc---------cHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 33455555444 6666777777676 3333333333332 27789999999998654 88999999999999
Q ss_pred HHHhccCCCCCCCCcchhHH-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhh-hhh-hhhhhHHHHHHhhhhhh
Q psy14676 1113 VKVIRPLTSPSSYDFAPFTS-DIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDY-LKS-ELPVCLPILLDRLRNEI 1189 (1827)
Q Consensus 1113 v~~l~~~~~~~~~~~~~~l~-~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~-l~~-~l~~lL~~Ll~~L~~e~ 1189 (1827)
..++-+- . .+ .++ ..+++++.+|. .=..-.|-|.++.|+..|-..-+.. |+. .+..+|. +++.+.-..
T Consensus 240 ~evlP~S--~---a~--vV~~~aIPvl~~kL~-~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~Ls-ylDFFSi~a 310 (1051)
T KOG0168|consen 240 CEVLPRS--S---AI--VVDEHAIPVLLEKLL-TIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLS-YLDFFSIHA 310 (1051)
T ss_pred Hhhccch--h---he--eecccchHHHHHhhh-hhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHH-HHHHHHHHH
Confidence 9887431 0 00 011 13455556665 1224568899999998887766542 221 2222222 122222222
Q ss_pred hHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhC
Q psy14676 1190 TRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNY 1247 (1827)
Q Consensus 1190 tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~ 1247 (1827)
.| .|+-....++.+-...++. ++-+.+|.|..+|...++..-..+.-|+..++..+
T Consensus 311 QR-~AlaiaaN~Cksi~sd~f~-~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 311 QR-VALAIAANCCKSIRSDEFH-FVMEALPLLTPLLSYQDKKPIESVCICLTRIADGF 366 (1051)
T ss_pred HH-HHHHHHHHHHhcCCCccch-HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence 23 3444445555554444444 77789999999998877777777777888877754
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.007 Score=61.90 Aligned_cols=97 Identities=22% Similarity=0.169 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHHHHHHcCCchhhhHH-hhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCh
Q psy14676 258 WKVRRAAAKCLEAIIATRRDLIGDMYR-LVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSP 336 (1827)
Q Consensus 258 WkVRraAak~L~~l~~~~~~~l~~~~~-~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~ 336 (1827)
|++|..++.+|..++...++....+.+ .++|.+.+.+.+.++.+|..++.+++.++....
T Consensus 21 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~------------------- 81 (120)
T cd00020 21 ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE------------------- 81 (120)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH-------------------
Confidence 899999999999999876655555555 889999999999999999999999999974210
Q ss_pred HhhHHhhh-HHHHHHHHHHhccCCHhHHHHHHHHHHHHH
Q psy14676 337 LCLLSTQV-PSLVKALQCQLREKSIRTRQDCLALLRELV 374 (1827)
Q Consensus 337 ~~~l~~~l-p~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~ 374 (1827)
....... ..+++.+.+.+.+++.++|..+..++..++
T Consensus 82 -~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 -DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred -HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 1111111 236788888888899999998888887765
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.35 Score=59.87 Aligned_cols=188 Identities=12% Similarity=0.183 Sum_probs=99.5
Q ss_pred CCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHH
Q psy14676 191 PKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEA 270 (1827)
Q Consensus 191 p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~ 270 (1827)
|+.+..++...+..+.+++.+++- ..+ ++ | +|+...-|+++.++...+..
T Consensus 73 Pe~fed~l~~wm~~f~~~L~~~~p-~l~-~~--------------------d--------~~e~~~l~kvK~~i~~~~~l 122 (370)
T PF08506_consen 73 PEFFEDNLSEWMEIFHKYLTYPNP-ALE-ED--------------------D--------DDEPGLLEKVKAWICENLNL 122 (370)
T ss_dssp -HHHHHTHHHHHHHHHHHHH--SG-GG--TT-----------------------------SSS--HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCc-ccC-CC--------------------C--------cccccHHHHHHHHHHHHHHH
Confidence 666666788889999999988521 111 00 0 01122458999999999999
Q ss_pred HHHHcCCchhhhHHhhhHHHHhhcC----C-CCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhH
Q psy14676 271 IIATRRDLIGDMYRLVSPPLIARFK----E-REENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVP 345 (1827)
Q Consensus 271 l~~~~~~~l~~~~~~v~p~L~~~l~----e-~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp 345 (1827)
.+..+.+.+.++.+..+....+.+. + +...+-..++.-++.+++....... +. . ...+...+.
T Consensus 123 y~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~l--f~---------~-~~~L~~Iie 190 (370)
T PF08506_consen 123 YAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNL--FE---------N-KPHLQQIIE 190 (370)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTT--T----------S-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHH--hC---------C-HHHHHHHHH
Confidence 9888888777777776666555542 1 2223334455555555432211100 00 0 111222222
Q ss_pred HH-H------------------HHHHHHhccCC-HhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCC
Q psy14676 346 SL-V------------------KALQCQLREKS-IRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLG 405 (1827)
Q Consensus 346 ~I-v------------------~~l~~~L~d~~-~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~ 405 (1827)
.| + ..+-+.+...+ ...|.+|..++..|+...+.... +.+...+...+++.
T Consensus 191 ~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~---~i~~~~i~~~l~~y------ 261 (370)
T PF08506_consen 191 KVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVT---SILMQYIQQLLQQY------ 261 (370)
T ss_dssp HTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH------
T ss_pred HhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHH------
Confidence 11 1 23333332222 34667999999999988765433 22223344444321
Q ss_pred CCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHH
Q psy14676 406 GEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIAT 454 (1827)
Q Consensus 406 ~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~ 454 (1827)
..+...+||-+.+|+..++.++..
T Consensus 262 -------------------------~~~~~~~w~~KD~Al~Li~ala~k 285 (370)
T PF08506_consen 262 -------------------------ASNPSNNWRSKDGALYLIGALASK 285 (370)
T ss_dssp -------------------------HH-TTT-HHHHHHHHHHHHHHHBS
T ss_pred -------------------------hhCCcccHHHHHHHHHHHHHHHhh
Confidence 001224799999999999999843
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.35 Score=58.50 Aligned_cols=202 Identities=18% Similarity=0.172 Sum_probs=133.9
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhh-chhH----HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc--hhh
Q psy14676 81 LTALLPQLSSPRQAVRKRTIVALSHLVMSC-NLQL----YTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG--HRF 153 (1827)
Q Consensus 81 l~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~-~~~~----~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~--~~~ 153 (1827)
|.-.+..+.+.+...|..|..++..+...- ..+. ...+++.++..+++... ..+..++.+++-++-+.| ..-
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccH
Confidence 445566677788999999999888877532 2222 34456777777766543 567788899999999865 555
Q ss_pred HHhHHHHHHHHHhhcccCc--hHHHHHHHHHHHHHHHhCCCccccch--HHHHHHHHH--HhccCCCCCcccccccCCCC
Q psy14676 154 AEHIERVMPLILKYSREED--DELREFCLQACEAFVQRCPKEITPHI--QSITELCLT--YITYDPNYNYEDEEEGLGGE 227 (1827)
Q Consensus 154 ~p~l~~i~p~l~~~~~~~~--delRe~al~ale~~~~~~p~e~~p~l--~~ii~~ll~--~l~~dpn~~~~ddd~~~~~~ 227 (1827)
...+..+.|.+.+.+.+.. ..+|..|+.||....-.+..+...+. -..+..++. +.+-|.+.
T Consensus 124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~------------ 191 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNA------------ 191 (309)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCc------------
Confidence 6678889999999887643 46788888888666555554432221 122332211 11111000
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCC-chhhhHHhhhHHHHhhcCCCCHhHHHHHH
Q psy14676 228 GGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRD-LIGDMYRLVSPPLIARFKEREENVKSDIF 306 (1827)
Q Consensus 228 ~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~-~l~~~~~~v~p~L~~~l~e~ee~VR~aa~ 306 (1827)
..... . .+-.+..+|..+.+-++...+. .+..+++..+|.|...+...+-+||.+|-
T Consensus 192 ---~~~~~---------------~----~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAG 249 (309)
T PF05004_consen 192 ---PVVAA---------------E----DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAG 249 (309)
T ss_pred ---ccccC---------------C----CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 00000 0 0115778888888888888775 35577888999999999999999999999
Q ss_pred HHHHHHHhhhc
Q psy14676 307 HAYMALLKGTR 317 (1827)
Q Consensus 307 ~al~~ll~~~~ 317 (1827)
.+++.+.+..+
T Consensus 250 EaiAll~E~~~ 260 (309)
T PF05004_consen 250 EAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHhh
Confidence 99988876543
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG2062|consensus | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.17 Score=64.23 Aligned_cols=264 Identities=17% Similarity=0.104 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhc-hhH
Q psy14676 36 RRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCN-LQL 114 (1827)
Q Consensus 36 ~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~-~~~ 114 (1827)
+.++-.|.+.+.+.++..+|.++|--||-. . +++...++.+.+-..|..+++..-++|..++|.+.-... .+.
T Consensus 412 ~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa--~----mGSa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~ea 485 (929)
T KOG2062|consen 412 RGITDYLLQQLKTAENEVVRHGACLGLGLA--G----MGSANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEA 485 (929)
T ss_pred ccHHHHHHHHHHhccchhhhhhhhhhccch--h----cccccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHH
Confidence 557788888887766788888887666532 2 334556788888888998888888999999998876543 333
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCcc
Q psy14676 115 YTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEI 194 (1827)
Q Consensus 115 ~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~ 194 (1827)
+.. |+.--.+.+...+.|..--.++-+.-...+.+.+ ++.+.+.+.|+-+|-....++ ....|+..-
T Consensus 486 ied----m~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~-------lI~el~~dkdpilR~~Gm~t~--alAy~GTgn 552 (929)
T KOG2062|consen 486 IED----MLTYAQETQHEKIIRGLAVGIALVVYGRQEDADP-------LIKELLRDKDPILRYGGMYTL--ALAYVGTGN 552 (929)
T ss_pred HHH----HHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHH-------HHHHHhcCCchhhhhhhHHHH--HHHHhccCc
Confidence 333 3332222233445555544444443333334443 444555677787885443332 223343321
Q ss_pred ccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHH
Q psy14676 195 TPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIAT 274 (1827)
Q Consensus 195 ~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~ 274 (1827)
..+|..++.+...|+| | .|||+|.-+|+-+...
T Consensus 553 ----nkair~lLh~aVsD~n---------------------------------------D----DVrRaAVialGFVl~~ 585 (929)
T KOG2062|consen 553 ----NKAIRRLLHVAVSDVN---------------------------------------D----DVRRAAVIALGFVLFR 585 (929)
T ss_pred ----hhhHHHhhcccccccc---------------------------------------h----HHHHHHHHHheeeEec
Confidence 2244455543322221 0 3999999999877655
Q ss_pred cCCchhhhHHhhhHHHHhhc-CCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHH
Q psy14676 275 RRDLIGDMYRLVSPPLIARF-KEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQC 353 (1827)
Q Consensus 275 ~~~~l~~~~~~v~p~L~~~l-~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~ 353 (1827)
-|+ .+|..++.+ .+.++.||..+..|+|-.+..+|. ..-+..+-.
T Consensus 586 dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~--------------------------~eAi~lLep 631 (929)
T KOG2062|consen 586 DPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL--------------------------KEAINLLEP 631 (929)
T ss_pred Chh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc--------------------------HHHHHHHhh
Confidence 443 234444444 345799999999999988754431 111223333
Q ss_pred HhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhh
Q psy14676 354 QLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWD 399 (1827)
Q Consensus 354 ~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~ 399 (1827)
+.+|+..=|||+++-.+.-+.-..-..+.+....+...+.++..++
T Consensus 632 l~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 632 LTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDK 677 (929)
T ss_pred hhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhh
Confidence 4458888899977766655554444444455555555555555443
|
|
| >KOG2025|consensus | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.019 Score=72.19 Aligned_cols=168 Identities=19% Similarity=0.171 Sum_probs=111.4
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHH
Q psy14676 1433 PRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQ 1512 (1827)
Q Consensus 1433 P~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr 1512 (1827)
-++.....+++-.+|--+++-|..+... ...+|+.+ .+.+...++.-+.|.+|+||
T Consensus 88 ~hlLRg~Eskdk~VRfrvlqila~l~d~-~~eidd~v-----------------------fn~l~e~l~~Rl~Drep~VR 143 (892)
T KOG2025|consen 88 YHLLRGTESKDKKVRFRVLQILALLSDE-NAEIDDDV-----------------------FNKLNEKLLIRLKDREPNVR 143 (892)
T ss_pred HHHHhcccCcchhHHHHHHHHHHHHhcc-ccccCHHH-----------------------HHHHHHHHHHHHhccCchHH
Confidence 3444445577888888888888877642 23455443 35677777888899999999
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhhhhccCCCCcccchhhhhhhhcccCC
Q psy14676 1513 NLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRNSSSNMKIDTLAFTHTLLTTHP 1592 (1827)
Q Consensus 1513 ~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~~~p~li~~~~~~~~~~~l~~ll 1592 (1827)
..|..||.++-.. +.+.=-++++.+...+.+|++ .+|||+|+..+.--. .-+
T Consensus 144 iqAv~aLsrlQ~d-~~dee~~v~n~l~~liqnDpS-------~EVRRaaLsnI~vdn--------------------sTl 195 (892)
T KOG2025|consen 144 IQAVLALSRLQGD-PKDEECPVVNLLKDLIQNDPS-------DEVRRAALSNISVDN--------------------STL 195 (892)
T ss_pred HHHHHHHHHHhcC-CCCCcccHHHHHHHHHhcCCc-------HHHHHHHHHhhccCc--------------------ccc
Confidence 9999999998742 222223555666666666644 499999988663221 234
Q ss_pred cccccccccccCCcchhccccceeeeccCcccccccCchhhhhHHHHHHHHHhhhhccCChHHHHHHHHhhccc-hhhHH
Q psy14676 1593 PAVFHPHIHILLPPVIIIKTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTCLDRVDMFEFLNHLESGLRD-HYDIK 1671 (1827)
Q Consensus 1593 p~l~~~~~~~~~~~t~~~~~lir~v~mgpfkh~vddgl~~Rk~a~e~~~~ll~~~~~~~~~~~~~~~~~~gl~d-~~dik 1671 (1827)
|.+. ..+ | |=..-.||.+|+-+.-=++-|...++ .+.-.+..||+| +.++|
T Consensus 196 p~Iv--------eRa--r----------------DV~~anRrlvY~r~lpkid~r~lsi~--krv~LlewgLnDRe~sVk 247 (892)
T KOG2025|consen 196 PCIV--------ERA--R----------------DVSGANRRLVYERCLPKIDLRSLSID--KRVLLLEWGLNDREFSVK 247 (892)
T ss_pred hhHH--------HHh--h----------------hhhHHHHHHHHHHhhhhhhhhhhhHH--HHHHHHHHhhhhhhhHHH
Confidence 5555 222 1 44567899999855444455554444 666678899999 77888
Q ss_pred HHHHHHHHH
Q psy14676 1672 MLTYLMLAR 1680 (1827)
Q Consensus 1672 ~l~~~~l~~ 1680 (1827)
.-|--++..
T Consensus 248 ~A~~d~il~ 256 (892)
T KOG2025|consen 248 GALVDAILS 256 (892)
T ss_pred HHHHHHHHH
Confidence 877666543
|
|
| >KOG1058|consensus | Back alignment and domain information |
|---|
Probab=96.54 E-value=1.3 Score=56.80 Aligned_cols=332 Identities=14% Similarity=0.083 Sum_probs=180.7
Q ss_pred chHHHHHHhccCChhhHHHHHHHHHHHHHhccc-cccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHH
Q psy14676 1035 LLPRLQESLKSNSALMRTTHQSNQTFNVIIQRN-DIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFV 1113 (1827)
Q Consensus 1035 llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~-~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv 1113 (1827)
++-.++-.+-+.+-..|.--+-.|..+....++ .+.+ .+--+-..+.+-++.++.-||...++.+..+=
T Consensus 58 lm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~----------EMILvcna~RkDLQHPNEyiRG~TLRFLckLk 127 (948)
T KOG1058|consen 58 LMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLH----------EMILVCNAYRKDLQHPNEYIRGSTLRFLCKLK 127 (948)
T ss_pred HHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHH----------HHHHHHHHHhhhccCchHhhcchhhhhhhhcC
Confidence 444444445555555555544444444333331 1111 14444455555566666667766655443321
Q ss_pred HHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh---
Q psy14676 1114 KVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT--- 1190 (1827)
Q Consensus 1114 ~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t--- 1190 (1827)
=...+++++|.+...|. ....-||+.|+-|++.+-.+ ++.+-|+-|.++..++.+=.+.+-
T Consensus 128 -------------E~ELlepl~p~Iracle--HrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~fL~~e~DpsCkRN 191 (948)
T KOG1058|consen 128 -------------EPELLEPLMPSIRACLE--HRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESFLLTEQDPSCKRN 191 (948)
T ss_pred -------------cHHHhhhhHHHHHHHHh--CcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHHHHhccCchhHHH
Confidence 11457888898888887 77888999999999999887 456667778877777665433332
Q ss_pred ---------HHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHH
Q psy14676 1191 ---------RLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTV 1261 (1827)
Q Consensus 1191 ---------R~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~ 1261 (1827)
+..|+.-++..... -.++.+.++-++-++....+..+.+.|.-=++++..++.+.++.. +..
T Consensus 192 AFi~L~~~D~ErAl~Yl~~~idq--i~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV-------~fE 262 (948)
T KOG1058|consen 192 AFLMLFTTDPERALNYLLSNIDQ--IPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAV-------IFE 262 (948)
T ss_pred HHHHHHhcCHHHHHHHHHhhHhh--ccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchh-------hhh
Confidence 23333333322211 112334444444444443334456666666788888887654331 111
Q ss_pred HhhhhcC-CCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHH-HHH
Q psy14676 1262 ELAPLVS-ESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAA-SYT 1339 (1827)
Q Consensus 1262 ~L~~ll~-d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aA-a~a 1339 (1827)
.-..+.+ .+|+....++..++..++...++.-+.--+..-+.++... ...-...+.--++..+.+++-+||.-+ ..+
T Consensus 263 aa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~-~~~il~~l~mDvLrvLss~dldvr~Ktldi~ 341 (948)
T KOG1058|consen 263 AAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKAL-HEKILQGLIMDVLRVLSSPDLDVRSKTLDIA 341 (948)
T ss_pred hcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhh-hHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 1122222 4566777777777777666544322100000111222100 001124566678888899999999887 466
Q ss_pred HhhhhhhhhhhhHHHHHHhhhc------CchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCch
Q psy14676 1340 LGSIAVGNLQQYVPFVLKEIEN------QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEE 1410 (1827)
Q Consensus 1340 LG~i~~~~l~~~LP~Il~~i~~------~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e 1410 (1827)
|+-+..-|+...+-++-+.+.+ ....+|+ +.|.+.|...+ ..+..+...+.+.|++.+.+.++
T Consensus 342 ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yR--qlLiktih~ca------v~Fp~~aatvV~~ll~fisD~N~ 410 (948)
T KOG1058|consen 342 LDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYR--QLLIKTIHACA------VKFPEVAATVVSLLLDFISDSNE 410 (948)
T ss_pred HhhhhhccHHHHHHHHHHHHHhccccccccchHHH--HHHHHHHHHHh------hcChHHHHHHHHHHHHHhccCCH
Confidence 7777777777777666655432 1123333 33333333211 23445777888888888766543
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.2 Score=60.52 Aligned_cols=130 Identities=18% Similarity=0.280 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhhccCCCCchh--HHHHHHH-hhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHH
Q psy14676 57 EALDILSDLLSRFGALLPSFH--FVILTAL-LPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTS 133 (1827)
Q Consensus 57 ~al~iL~~l~~~~~~~l~~~~--~~il~~l-l~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~ 133 (1827)
.+|.+...++++....+.+.. ..+++.+ .|.++++++.||+.|+.|+|.++-.-. +.-.+.+.-+...+.+ ++..
T Consensus 2 kcL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~~~-~~~~ 79 (298)
T PF12719_consen 2 KCLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQALQK-DDEE 79 (298)
T ss_pred cHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHh-CCHH
Confidence 368888999999875565532 3666555 599999999999999999999988654 4445567777777744 4788
Q ss_pred HHHHHHHHHHHHHHHhchhhHH-hH--------HHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Q psy14676 134 TNRTYIQCFAAICRQAGHRFAE-HI--------ERVMPLILKYSREEDDELREFCLQACEAFVQ 188 (1827)
Q Consensus 134 ~r~~ai~~l~~la~~~~~~~~p-~l--------~~i~p~l~~~~~~~~delRe~al~ale~~~~ 188 (1827)
++..+++++..+.-..|..+.. .- ..+..++.+++..+++++|..|.+++..+.-
T Consensus 80 v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 80 VKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred HHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 9999999999999888744322 22 3588888888888899999777766655443
|
|
| >KOG0413|consensus | Back alignment and domain information |
|---|
Probab=96.49 E-value=5.2 Score=52.73 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHhhccCC---CcchHHHHHhhh-cCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhccc
Q psy14676 1411 GTRNVVAECLGKLTLIDP---SNLLPRLQESLK-SNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSI 1486 (1827)
Q Consensus 1411 ~vR~~aAecLGkL~~~~p---~~~lP~L~~~l~-~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~ 1486 (1827)
-+|.++-.+||++++.+. ..++|.|.+-|. +....+|..++-|+.-+.++= .
T Consensus 946 ~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----T-------------------- 1001 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----T-------------------- 1001 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----H--------------------
Confidence 478889999999999885 469999988886 445566666555444333210 0
Q ss_pred ccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhh----hhhhHHHHHHHHHhhhcccccccccCCccchhHHHH
Q psy14676 1487 KLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKV----KEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVIS 1562 (1827)
Q Consensus 1487 ~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l----~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al 1562 (1827)
--.+..+|.+-..|.||.+.||..++--|..|.+.= .++-.-+.+..++. . +.++|+.|-
T Consensus 1002 ----am~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l~D----~--------~edIr~~a~ 1065 (1529)
T KOG0413|consen 1002 ----AMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFGIVKWNGELFIRFMLALLD----A--------NEDIRNDAK 1065 (1529)
T ss_pred ----HHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHHcc----c--------CHHHHHHHH
Confidence 023567899999999999999999999999998641 23344445554443 2 239999999
Q ss_pred HHHhhhhccC
Q psy14676 1563 VVYCLGDRNS 1572 (1827)
Q Consensus 1563 ~~l~s~a~~~ 1572 (1827)
--|..+...+
T Consensus 1066 f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1066 FYISEVLQSE 1075 (1529)
T ss_pred HHHHHHHhhc
Confidence 8888877654
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.013 Score=59.86 Aligned_cols=107 Identities=15% Similarity=0.168 Sum_probs=82.2
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhc---hhHHH-HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHH
Q psy14676 80 ILTALLPQLSSPRQAVRKRTIVALSHLVMSCN---LQLYT-KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAE 155 (1827)
Q Consensus 80 il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~---~~~~~-~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p 155 (1827)
+++.+++.|.++++.+|..|+.+++.++...+ ..... ..++.++..|.. +++.+++.++.+++.++...+.....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 67778888899899999999999999997632 22233 456666666654 46899999999999999876544333
Q ss_pred hH-HHHHHHHHhhcccCchHHHHHHHHHHHHHH
Q psy14676 156 HI-ERVMPLILKYSREEDDELREFCLQACEAFV 187 (1827)
Q Consensus 156 ~l-~~i~p~l~~~~~~~~delRe~al~ale~~~ 187 (1827)
+. .++++.+.+.+++.+.++|+.++.++..++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 33 358999999998888999999988876654
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG1822|consensus | Back alignment and domain information |
|---|
Probab=96.29 E-value=10 Score=54.06 Aligned_cols=156 Identities=17% Similarity=0.238 Sum_probs=114.2
Q ss_pred HHHHHHHHhhccC-CCCc--hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHH-HHHHHHHHHhccCCCCHHH
Q psy14676 59 LDILSDLLSRFGA-LLPS--FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLY-TKLIDFLLEGLTTNKSTST 134 (1827)
Q Consensus 59 l~iL~~l~~~~~~-~l~~--~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~-~~l~~~ll~~L~~~~~~~~ 134 (1827)
+.+|..+.+.-+. .+++ +...-...++..|..+++..|=++..|++.++...++..| ..+.+..+..|++..++-.
T Consensus 853 ~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~ 932 (2067)
T KOG1822|consen 853 LSALKYLAEFKGATSLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPIT 932 (2067)
T ss_pred HHHHHHHHhcccccccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHH
Confidence 3345555555443 3333 2334455566778889999999999999999999887654 5677888889988777778
Q ss_pred HHHHHHHHHHHHHHhchhh-HHhHHHHHHHHHhhcccCch-HHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccC
Q psy14676 135 NRTYIQCFAAICRQAGHRF-AEHIERVMPLILKYSREEDD-ELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYD 212 (1827)
Q Consensus 135 r~~ai~~l~~la~~~~~~~-~p~l~~i~p~l~~~~~~~~d-elRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~d 212 (1827)
|....-++|.+-+..+.-. +.|+..-+..++...+|..+ .|+..++.|+.-.+..-+..+.-|+...+..|+..+..+
T Consensus 933 R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~ 1012 (2067)
T KOG1822|consen 933 RTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSV 1012 (2067)
T ss_pred HHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCC
Confidence 8888999999999887543 45777767777777777644 899999888877776655666777777788888777665
Q ss_pred CC
Q psy14676 213 PN 214 (1827)
Q Consensus 213 pn 214 (1827)
|.
T Consensus 1013 p~ 1014 (2067)
T KOG1822|consen 1013 PT 1014 (2067)
T ss_pred Cc
Confidence 53
|
|
| >KOG1993|consensus | Back alignment and domain information |
|---|
Probab=96.28 E-value=2.8 Score=54.36 Aligned_cols=298 Identities=14% Similarity=0.178 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHHh----cCC-------CHHH-HHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCC--C-CHHHHHHH
Q psy14676 35 CRRITGKLSTAIE----KQE-------DVSV-QLEALDILSDLLSRFGALLPSFHFVILTALLPQLSS--P-RQAVRKRT 99 (1827)
Q Consensus 35 ~~~L~P~Ll~~l~----~~~-------~~~v-~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~--~-~~~VRk~A 99 (1827)
...++|.+++.+. ..+ +.-+ ++++..+.|.-...+-..+ ++..=+.+.+++-|+. + ...+|+|-
T Consensus 429 sqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~-dF~~Wl~~~llpEl~~~~~~~RiiRRRV 507 (978)
T KOG1993|consen 429 SQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNIL-DFDKWLQEALLPELANDHGNSRIIRRRV 507 (978)
T ss_pred HHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHhhCHHhhhcccchhHHHHHH
Confidence 4556777766552 110 1222 3444455565555555544 3545566677777763 2 35789999
Q ss_pred HHHHHHHHHh-hchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH---hchhhHHhHHHHHHHHHhhccc-CchH
Q psy14676 100 IVALSHLVMS-CNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQ---AGHRFAEHIERVMPLILKYSRE-EDDE 174 (1827)
Q Consensus 100 i~aL~~l~~~-~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~---~~~~~~p~l~~i~p~l~~~~~~-~~de 174 (1827)
+--+|+.+.. ++.+.-..+...+++-|...++..+|-++++++..+.+- .++.|.||++.+.-.+++.+.. ..-+
T Consensus 508 a~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~D 587 (978)
T KOG1993|consen 508 AWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECD 587 (978)
T ss_pred HHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhh
Confidence 9999999884 333333444566666666666777899999999888764 4688999999998888887653 3445
Q ss_pred HHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCc
Q psy14676 175 LREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDD 254 (1827)
Q Consensus 175 lRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sddd 254 (1827)
.|-+-+..+..++.+.++-++||...++..+-.. |. +.+ + +
T Consensus 588 tk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~L--------------We---------~s~---------~-------e 628 (978)
T KOG1993|consen 588 TKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLL--------------WE---------ESE---------E-------E 628 (978)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--------------Hh---------hhc---------c-------C
Confidence 5667778888888888888888877766655432 10 000 0 0
Q ss_pred cchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCH---hHHHHHHHHHHHHHhhhcccCCCCCCCCCCCC
Q psy14676 255 DMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREE---NVKSDIFHAYMALLKGTRTFSPLTPSDPNQMD 331 (1827)
Q Consensus 255 D~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee---~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~ 331 (1827)
+ -.|-+-..+|..++.+.+..-.++|+.+.|.+.-..+-..+ ..-.++++-|+..+...
T Consensus 629 ~---lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~--------------- 690 (978)
T KOG1993|consen 629 P---LLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNS--------------- 690 (978)
T ss_pred c---HHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcc---------------
Confidence 0 36666777888899888866667888888887765532222 34677888888777322
Q ss_pred CCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhC-cccccCchhhHHHHHHHHhh
Q psy14676 332 QEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTL-PGCLAPSLPALIPDVTSVAE 397 (1827)
Q Consensus 332 ~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl-~~~l~~~l~~Llp~i~~~L~ 397 (1827)
+.+.+.+-.++|.+...+.- +.+.-..++.++..-.-.. +..+..|...+...+...+.
T Consensus 691 ------~~l~p~ll~L~p~l~~~iE~-ste~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~ 750 (978)
T KOG1993|consen 691 ------QKLTPELLLLFPHLLYIIEQ-STENLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLD 750 (978)
T ss_pred ------cccCHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 12233333444444444322 2223334444444333222 23445666677766666663
|
|
| >KOG0392|consensus | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.083 Score=70.46 Aligned_cols=194 Identities=19% Similarity=0.158 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHH
Q psy14676 362 TRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVR 441 (1827)
Q Consensus 362 vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr 441 (1827)
.|.+|--+|..++..+++.+...+|.+-..+...|.+. . | .+ |...
T Consensus 749 errgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~-------~-----------~-------~~----d~~~----- 794 (1549)
T KOG0392|consen 749 ERRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGL-------I-----------D-------GN----DEFL----- 794 (1549)
T ss_pred HhhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhcc-------C-----------C-------CC----cchh-----
Confidence 47899999999999999999888888888888877421 0 0 00 0111
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhh
Q psy14676 442 RAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLS 521 (1827)
Q Consensus 442 ~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r 521 (1827)
...+.+-.++-..+..|.| +-.+.|.++.+.+..+..+|..++++++.+.+....
T Consensus 795 -~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~----------------------- 849 (1549)
T KOG0392|consen 795 -SSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATR----------------------- 849 (1549)
T ss_pred -hhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 1123333333334455666 556788999999999999999999998888654220
Q ss_pred chhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchh
Q psy14676 522 TQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNG 601 (1827)
Q Consensus 522 ~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~ 601 (1827)
.+...++..+...+++.+.=.|.-+...++-.+..........+..-+++.|++++.|...
T Consensus 850 -------------------e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d 910 (1549)
T KOG0392|consen 850 -------------------ETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQID 910 (1549)
T ss_pred -------------------HHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchH
Confidence 0111222223333333333333333333333333323333445667788999999999999
Q ss_pred hHHHHHHHhhhhHHHHhhhhhcCccccccccc
Q psy14676 602 EVQNLAVKCLGPLFKALTKIAASPLRIDLRPI 633 (1827)
Q Consensus 602 eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~ 633 (1827)
.||+.|.++...+++.++.-++.+=..++++.
T Consensus 911 ~vR~aat~~fa~lip~~~le~g~~~p~gls~e 942 (1549)
T KOG0392|consen 911 SVREAATKVFAKLIPLLPLEAGIPDPTGLSKE 942 (1549)
T ss_pred HHHHHHHHHHHHHhcccccccCCCCCccccHH
Confidence 99999999999999888875554333344333
|
|
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.89 Score=57.53 Aligned_cols=224 Identities=14% Similarity=0.217 Sum_probs=119.1
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcc-----cchHHHHHHHHHHHHHHhhC
Q psy14676 854 TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSRE-----EDDELREFCLQACEAFVQRC 928 (1827)
Q Consensus 854 ~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d-----~~~~vre~al~Ale~~v~~~ 928 (1827)
..++..+...+..+.+ ...+..+.|+-.+....++.+.||...+++.+...+.. .++..--...++++.++.++
T Consensus 25 ~~ll~~Lf~~i~~~~s-~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~ 103 (435)
T PF03378_consen 25 QQLLQNLFALIEKPGS-AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFV 103 (435)
T ss_dssp HHHHHHHHHHHHTT-S-TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhc
Confidence 3444444444443222 56788889999999999999999999999998877753 45555666667766666543
Q ss_pred CCccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhh
Q psy14676 929 PKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLH 1008 (1827)
Q Consensus 929 ~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~ 1008 (1827)
...-...+. .+.+.++.-|. .. ......++.|-.
T Consensus 104 ~~~~~~~v~------------~~E~~L~P~f~------------------~I---------Lq~dV~EF~PYv------- 137 (435)
T PF03378_consen 104 CEADPEAVS------------QFEEALFPPFQ------------------EI---------LQQDVQEFIPYV------- 137 (435)
T ss_dssp -GGGHH---------------HHHHHHHHHHH------------------HH---------HHTT-TTTHHHH-------
T ss_pred cCCChhHHH------------HHHHHHHHHHH------------------HH---------HHHHHHHHHHHH-------
Confidence 221000010 11111111110 00 001122333322
Q ss_pred hhccccchhhHHHHHHhhhcccC-----C---CCchHHHHHHhccCChhhHHHHHHHHHHHHHhcccccc--ccccchhh
Q psy14676 1009 CECQEEGTRNVVAECLGKLTLID-----P---SNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIH--NHNEETSF 1078 (1827)
Q Consensus 1009 l~~~e~~vR~~a~e~Lg~L~~~~-----~---~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~--~~~~~~~~ 1078 (1827)
++.|+.+.... | ..++|.+..-.-......=-+...+|.++..+.+..+. ++
T Consensus 138 ------------fQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~------ 199 (435)
T PF03378_consen 138 ------------FQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQ------ 199 (435)
T ss_dssp ------------HHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-------
T ss_pred ------------HHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhh------
Confidence 22222222222 1 22444444222111111113455577766666666553 45
Q ss_pred hhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHH
Q psy14676 1079 IYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKER 1154 (1827)
Q Consensus 1079 ~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~ 1154 (1827)
+..++..+.+++..+... ..|+..++.++..+.+ ..+.+|+..++..++.||+.+-++.-+|..
T Consensus 200 ----l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~------~~l~~yl~~I~~lll~RLq~skT~kf~~~f 263 (435)
T PF03378_consen 200 ----LEPILGVFQKLIASKAND--HYGFDLLESIVENLPP------EALEPYLKQIFTLLLTRLQSSKTEKFVKRF 263 (435)
T ss_dssp ----CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-H------HHHGGGHHHHHHHHHHHHHHC--HHHHHHH
T ss_pred ----HHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHHHhhCCcHHHHHHH
Confidence 778888888888765433 5688999999988753 457899999999999999955444334333
|
CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C. |
| >KOG0414|consensus | Back alignment and domain information |
|---|
Probab=96.21 E-value=8.7 Score=52.39 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=58.8
Q ss_pred hhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHH
Q psy14676 286 VSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQD 365 (1827)
Q Consensus 286 v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a 365 (1827)
++..|.+++.+-..-||..++..|..++++.... ......++......|.|++.-||..
T Consensus 360 ~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p---------------------~~~~~eV~~la~grl~DkSslVRk~ 418 (1251)
T KOG0414|consen 360 LLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIP---------------------LGSRTEVLELAIGRLEDKSSLVRKN 418 (1251)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCC---------------------ccHHHHHHHHHhcccccccHHHHHH
Confidence 4556778888889999999999999998764321 1235567777888899999999999
Q ss_pred HHHHHHHHHHhCcc
Q psy14676 366 CLALLRELVQTLPG 379 (1827)
Q Consensus 366 ~~~ll~~L~~vl~~ 379 (1827)
+++++..+....|-
T Consensus 419 Ai~Ll~~~L~~~Pf 432 (1251)
T KOG0414|consen 419 AIQLLSSLLDRHPF 432 (1251)
T ss_pred HHHHHHHHHhcCCc
Confidence 99999999888775
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=96.16 E-value=2.3 Score=56.61 Aligned_cols=357 Identities=18% Similarity=0.197 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh--HHHHHHHHHHHhcCCCccccch-hhhhhHhhhhhhhcchh
Q psy14676 1153 ERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT--RLTTVKALTKIAASPLRIDLRP-ILTDGIPILGSFLRKNQ 1229 (1827)
Q Consensus 1153 e~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t--R~~av~al~~ia~~~~~~dl~p-~~~~~l~~L~~~Lrk~~ 1229 (1827)
+.++..|..+.....-...=.-..+++.|++.|..++. ...++..+..+.-..... .. .-..+++.|..++...+
T Consensus 267 rv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK--~~m~~~giV~kL~kLl~s~~ 344 (708)
T PF05804_consen 267 RVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENK--DEMAESGIVEKLLKLLPSEN 344 (708)
T ss_pred HHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH--HHHHHcCCHHHHHHHhcCCC
Confidence 35566666666554332222345677888877765543 666677777665432110 11 12457888999998777
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcChHhH-HHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccc
Q psy14676 1230 RALKLSTLLLLDTLLVNYPSAISTEML-NKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRH 1308 (1827)
Q Consensus 1230 r~lR~~al~aL~~L~~~~~~~l~~~~~-~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~ 1308 (1827)
..++..++..|..|... ..+-...+ .+++|.|..++.+.+ .+..++.+|..++.... ++.
T Consensus 345 ~~l~~~aLrlL~NLSfd--~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~---------------~r~ 405 (708)
T PF05804_consen 345 EDLVNVALRLLFNLSFD--PELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDE---------------ARS 405 (708)
T ss_pred HHHHHHHHHHHHHhCcC--HHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHh---------------hHH
Confidence 88999999988876432 22222222 257788888888754 34556667766655221 111
Q ss_pred cCCCchhhHHHHHHHhcCC-CCHhHHHHHHHHHhhhhhh--hh-----hhhHHHHHHhhhcCchhhHHHHHHHHHHHhhc
Q psy14676 1309 TDLTSVADLKQVILNAFTP-TSEEVKSAASYTLGSIAVG--NL-----QQYVPFVLKEIENQPKRQYLLLHSLKEIISWQ 1380 (1827)
Q Consensus 1309 ~~~~~~~~l~~~~l~~~~~-~s~eVr~aAa~aLG~i~~~--~l-----~~~LP~Il~~i~~~~~~q~~~l~aL~Eii~~~ 1380 (1827)
+ + ...+.+|.+.+.+.. +.+++...+...+-+++.. |. ..-||.+++..-.. +..+++..++-+-.+-
T Consensus 406 ~-f-~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~--~D~lLlKlIRNiS~h~ 481 (708)
T PF05804_consen 406 M-F-AYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKT--RDPLLLKLIRNISQHD 481 (708)
T ss_pred H-H-hhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhc--ccHHHHHHHHHHHhcC
Confidence 1 0 012345555555433 4555655443333332211 10 12455565543221 2245566666665432
Q ss_pred cccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccC-C----------CcchHHHHHhhhcCCHHHHHH
Q psy14676 1381 STSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLID-P----------SNLLPRLQESLKSNSALMRTT 1449 (1827)
Q Consensus 1381 ~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~-p----------~~~lP~L~~~l~~~~~~~R~t 1449 (1827)
... ...+.+|+..|... +...+ .-..+.||||.|+... | ..++|.|.+.+..... .-..
T Consensus 482 ~~~---k~~f~~~i~~L~~~----v~~~~--~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~-~dDl 551 (708)
T PF05804_consen 482 GPL---KELFVDFIGDLAKI----VSSGD--SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGAS-EDDL 551 (708)
T ss_pred chH---HHHHHHHHHHHHHH----hhcCC--cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCC-ChHH
Confidence 100 11233444444333 32222 2478899999999764 2 2688888888863321 1123
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCC--chHHHHHHHHHhhhhhhhhh
Q psy14676 1450 VLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDK--NGEVQNLAVKCLGPLVNKVK 1527 (1827)
Q Consensus 1450 ~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~--~~~Vr~~a~~~Lg~L~~~l~ 1527 (1827)
++.++-.+-+-. .|+.-. ..+ ....+++.++.+++.. |.++...-.-++..++.+-.
T Consensus 552 ~LE~Vi~~gtla---~d~~~A--------~lL----------~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~ 610 (708)
T PF05804_consen 552 LLEVVILLGTLA---SDPECA--------PLL----------AKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEE 610 (708)
T ss_pred HHHHHHHHHHHH---CCHHHH--------HHH----------HhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChH
Confidence 444443333211 122211 000 1123556666665322 34555566666666664421
Q ss_pred -hhhH---HHHHHHHHhhhcccccccccCCccchhHHHHHHHhhhhccCC
Q psy14676 1528 -EFQV---ETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRNSS 1573 (1827)
Q Consensus 1528 -~~~~---~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~~~p 1573 (1827)
.+.+ ..++.-++.-+...|. .||+++-.+|.-++-..+
T Consensus 611 tr~~ll~~~~~~~ylidL~~d~N~--------~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 611 TREVLLKETEIPAYLIDLMHDKNA--------EIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHHHHHhccchHHHHHHHhcCCCH--------HHHHHHHHHHHHHHHhCH
Confidence 1111 1233334443443333 999999999988775443
|
|
| >KOG1078|consensus | Back alignment and domain information |
|---|
Probab=96.14 E-value=4.2 Score=52.91 Aligned_cols=237 Identities=12% Similarity=0.055 Sum_probs=139.3
Q ss_pred hhccccchhhHHHHHHhhhcccCCCCch---HHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhh
Q psy14676 1009 CECQEEGTRNVVAECLGKLTLIDPSNLL---PRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYF 1085 (1827)
Q Consensus 1009 l~~~e~~vR~~a~e~Lg~L~~~~~~~ll---P~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~ 1085 (1827)
|.++....|-.|.++|.+++...|..+. +.+.....+.+-. -+.-++..+...+. +.-+.-|-.
T Consensus 291 lssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~Nrs---Iat~AITtLLKTG~----------e~sv~rLm~ 357 (865)
T KOG1078|consen 291 LSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRS---IATLAITTLLKTGT----------ESSVDRLMK 357 (865)
T ss_pred hcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccc---hhHHHHHHHHHhcc----------hhHHHHHHH
Confidence 4556667788889999999888765432 2344444433322 12222221111111 111122555
Q ss_pred hhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q psy14676 1086 LLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICN 1165 (1827)
Q Consensus 1086 Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~ 1165 (1827)
.++.++.-+.|+|-.|...|.+++..... .-...+...+..+..++...|-+.+.+.++..+++.
T Consensus 358 qI~~fv~disDeFKivvvdai~sLc~~fp---------------~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~ 422 (865)
T KOG1078|consen 358 QISSFVSDISDEFKIVVVDAIRSLCLKFP---------------RKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEE 422 (865)
T ss_pred HHHHHHHhccccceEEeHHHHHHHHhhcc---------------HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHh
Confidence 66777788889988888888777666542 222333333334444566778888888888888774
Q ss_pred hhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHHHHhcCCC-ccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy14676 1166 LGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIAASPL-RIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLL 1244 (1827)
Q Consensus 1166 ~g~~l~~~l~~lL~~Ll~~L~~e~tR~~av~al~~ia~~~~-~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~ 1244 (1827)
..+ .-...|..|.+.+.+..-+.-+++-++.++.... ...=+.|+..+... +-=.+..+|.+++.||.++.
T Consensus 423 ~pd----sKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNR----viLEn~ivRaaAv~alaKfg 494 (865)
T KOG1078|consen 423 NPD----SKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNR----VILENAIVRAAAVSALAKFG 494 (865)
T ss_pred Ccc----hhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhh----hhhhhhhhHHHHHHHHHHHh
Confidence 432 2334666777777777778888888888876332 11112233322211 11134568999999998887
Q ss_pred HhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHH
Q psy14676 1245 VNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIA 1286 (1827)
Q Consensus 1245 ~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~ 1286 (1827)
.... ...+.+..-|.+-+.|.|-.+|..+--.|..+-
T Consensus 495 ~~~~-----~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 495 AQDV-----VLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred cCCC-----CccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 3211 123345666788899999999988665555544
|
|
| >KOG4413|consensus | Back alignment and domain information |
|---|
Probab=96.14 E-value=2.2 Score=49.69 Aligned_cols=273 Identities=16% Similarity=0.144 Sum_probs=150.2
Q ss_pred hhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhH
Q psy14676 1219 PILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAA 1298 (1827)
Q Consensus 1219 ~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i 1298 (1827)
|.+-++...|+|+.-.-++.+|..|.+.. .+.+....++|.|...+-..|..+..+++..++.+.+.+....
T Consensus 46 pdifgfeNenhrekttlcVscLERLfkak---egahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtna----- 117 (524)
T KOG4413|consen 46 PDIFGFENENHREKTTLCVSCLERLFKAK---EGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNA----- 117 (524)
T ss_pred CCCcccccccccchhhhHHHHHHHHHhhc---cchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhh-----
Confidence 34556666777777677888999888842 2233456688888888888888999999998888888765321
Q ss_pred HhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhh--hhhhhHHHH------HH-h-hhcCchhhHH
Q psy14676 1299 ASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVG--NLQQYVPFV------LK-E-IENQPKRQYL 1368 (1827)
Q Consensus 1299 ~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~--~l~~~LP~I------l~-~-i~~~~~~q~~ 1368 (1827)
+.++-.-+ ...+.+.++.|...++.+|-.+|...+.+++.- .+..++|.= +. . ++-+.-.||+
T Consensus 118 ---Vseillvv----NaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvR 190 (524)
T KOG4413|consen 118 ---VSEILLVV----NAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVR 190 (524)
T ss_pred ---HHHHHHHh----hhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHH
Confidence 11221111 246889999999999999999999999987641 122221110 00 0 1112335777
Q ss_pred HHHHHHHHHhhccccccchhhhhchH-HHHHHHHhhhhcCCch-hHHHHHHHHHHHhhccC-CCcchHHHHHhhhcCCHH
Q psy14676 1369 LLHSLKEIISWQSTSTSGVAQLQQFV-PAIWAQLFLHCECQEE-GTRNVVAECLGKLTLID-PSNLLPRLQESLKSNSAL 1445 (1827)
Q Consensus 1369 ~l~aL~Eii~~~~~s~~g~~~L~~~~-~~i~~~L~~~~~~~~e-~vR~~aAecLGkL~~~~-p~~~lP~L~~~l~~~~~~ 1445 (1827)
++.-+.|+.+ .| +.....+- ..+++.|...+...++ -+|..+.|-.-.|+..+ .+.|+|+
T Consensus 191 VleLIieifS---iS---pesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQ----------- 253 (524)
T KOG4413|consen 191 VLELIIEIFS---IS---PESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQ----------- 253 (524)
T ss_pred HHHHHHHHHh---cC---HHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcch-----------
Confidence 7777777754 22 33332221 3456666665544332 25555666666666543 3444442
Q ss_pred HHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhc-ccccChhHH----HHHHHHHHHhhcCCchHHHHHHHHHhh
Q psy14676 1446 MRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKD-SIKLDDDSE----RKVVKMLLRLLEDKNGEVQNLAVKCLG 1520 (1827)
Q Consensus 1446 ~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~-~~~~~~~~~----~~l~~~ll~~l~D~~~~Vr~~a~~~Lg 1520 (1827)
..++.-+..+++.. +.||.-+|.++--+.|++-.. .++.++... -..+.-.+.++.-.||.-...|+.++|
T Consensus 254 --eglIdlicnIIsGa--dsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalG 329 (524)
T KOG4413|consen 254 --EGLIDLICNIISGA--DSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALG 329 (524)
T ss_pred --hhHHHHHHHHhhCC--CCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHH
Confidence 11222333333221 122222222222222222111 111111111 122344456655556666889999999
Q ss_pred hhhhhhh
Q psy14676 1521 PLVNKVK 1527 (1827)
Q Consensus 1521 ~L~~~l~ 1527 (1827)
.+.....
T Consensus 330 ilGSnte 336 (524)
T KOG4413|consen 330 ILGSNTE 336 (524)
T ss_pred hccCCcc
Confidence 9886654
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0061 Score=46.54 Aligned_cols=30 Identities=37% Similarity=0.731 Sum_probs=26.7
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHhhhhhhh
Q psy14676 1496 VVKMLLRLLEDKNGEVQNLAVKCLGPLVNK 1525 (1827)
Q Consensus 1496 l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~ 1525 (1827)
++|.++++++|+++.||.+|+.+||.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 469999999999999999999999999864
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=96.11 E-value=1.2 Score=52.51 Aligned_cols=238 Identities=18% Similarity=0.260 Sum_probs=144.3
Q ss_pred CCHHHHHHHHHHHHHHHhhccCC-CCchh-HHHHHHHhhhcCCCCHHHHHHHHHHHHHHHH--hhchhHHHHHHHHHHHh
Q psy14676 50 EDVSVQLEALDILSDLLSRFGAL-LPSFH-FVILTALLPQLSSPRQAVRKRTIVALSHLVM--SCNLQLYTKLIDFLLEG 125 (1827)
Q Consensus 50 ~~~~v~~~al~iL~~l~~~~~~~-l~~~~-~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~--~~~~~~~~~l~~~ll~~ 125 (1827)
+++.+|..|+..|+++++++++. +.... ..++..+...|.| ...++.. ..++..++. ..+.+....++..+.+.
T Consensus 11 ed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D-~~~~~~~-l~gl~~L~~~~~~~~~~~~~i~~~l~~~ 88 (262)
T PF14500_consen 11 EDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD-HACVQPA-LKGLLALVKMKNFSPESAVKILRSLFQN 88 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc-HhhHHHH-HHHHHHHHhCcCCChhhHHHHHHHHHHh
Confidence 48999999999999999999975 44433 3455556666754 3334443 677777763 33344455556666554
Q ss_pred ccC-CCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccC-chHHHHHHHHHHHHHHHhCCCccccchHHHHH
Q psy14676 126 LTT-NKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREE-DDELREFCLQACEAFVQRCPKEITPHIQSITE 203 (1827)
Q Consensus 126 L~~-~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~-~delRe~al~ale~~~~~~p~e~~p~l~~ii~ 203 (1827)
..- .-....|..+.+.+..+.+.....+...=+.++..+++.+..+ |+.---.++.-+..+....+ +.++...+.+
T Consensus 89 ~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~~~~e~lFd 166 (262)
T PF14500_consen 89 VDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--ISEFAEDLFD 166 (262)
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cchhHHHHHH
Confidence 421 2235679999999999998876666555566777777777655 55433334444444444444 3667777777
Q ss_pred HHHHHhc--cCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCC-CccchhhHHHHHHHHHHHHHHHcCCchh
Q psy14676 204 LCLTYIT--YDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSD-DDDMSWKVRRAAAKCLEAIIATRRDLIG 280 (1827)
Q Consensus 204 ~ll~~l~--~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sd-ddD~sWkVRraAak~L~~l~~~~~~~l~ 280 (1827)
.+.-|.- +.|.-+ |.|.- -+ ..+++-.+|| .+.|
T Consensus 167 ~~~cYFPI~F~pp~~-------------------------------dp~~IT~e----dLk~~L~~cl----~s~~---- 203 (262)
T PF14500_consen 167 VFSCYFPITFRPPPN-------------------------------DPYGITRE----DLKRALRNCL----SSTP---- 203 (262)
T ss_pred HhhheeeeeeeCCCC-------------------------------CCCCCCHH----HHHHHHHHHh----cCcH----
Confidence 7765422 112110 00000 00 1233333333 2212
Q ss_pred hhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHH
Q psy14676 281 DMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQC 353 (1827)
Q Consensus 281 ~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~ 353 (1827)
.+-+..+|.|++.+.....++|.+++.++.+.+...+ ...+.+++.+|+.++-.
T Consensus 204 ~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~-------------------~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 204 LFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYG-------------------ADSLSPHWSTIWNALKF 257 (262)
T ss_pred hhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCC-------------------HHHHHHHHHHHHHHHHH
Confidence 2446789999999999999999999999999885432 24456666666665543
|
|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.11 Score=64.14 Aligned_cols=228 Identities=18% Similarity=0.175 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhccc-----CchHHHHHHHHHHHHHHHhCCC-----ccccchHHHH
Q psy14676 133 STNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSRE-----EDDELREFCLQACEAFVQRCPK-----EITPHIQSIT 202 (1827)
Q Consensus 133 ~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~-----~~delRe~al~ale~~~~~~p~-----e~~p~l~~ii 202 (1827)
.++..+|..+.-.++...+.|.+|++.++..+.+.+.. ..|.+-..|++.+.+.++ .+. ...|+++.|+
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~-~~~~~~lf~~~~~L~~Ii 189 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAE-SPHHKNLFENKPHLQQII 189 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHT-SHHHHTTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHc-chhHHHHhCCHHHHHHHH
Confidence 46777888888888888899999999999988887642 345555556665554433 221 2256777777
Q ss_pred HH-HHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCC----CCCccchhhHHHHHHHHHHHHHHHcCC
Q psy14676 203 EL-CLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEY----SDDDDMSWKVRRAAAKCLEAIIATRRD 277 (1827)
Q Consensus 203 ~~-ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~----sdddD~sWkVRraAak~L~~l~~~~~~ 277 (1827)
.. ++-.|.+. .+|++-+. +|. .|| -|..| +-+.|+||...+-++.+.++.
T Consensus 190 e~VI~Pnl~~~----e~D~ElfE--------ddP------------~EYIrrd~e~sd-~~TrR~AA~dfl~~L~~~~~~ 244 (370)
T PF08506_consen 190 EKVIFPNLCLR----EEDEELFE--------DDP------------EEYIRRDLEGSD-SDTRRRAACDFLRSLCKKFEK 244 (370)
T ss_dssp HHTHHHHHS------HHHHHHHH--------HSH------------HHHHHHHSCSS----SHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCccCCC----HHHHHHHc--------cCH------------HHHHHhhccccc-cCCcHHHHHHHHHHHHHHHhH
Confidence 63 35555542 12222220 000 001 01111 236899999999999988776
Q ss_pred chhhhHHhhhHHHHhh---cCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHH
Q psy14676 278 LIGDMYRLVSPPLIAR---FKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQ 354 (1827)
Q Consensus 278 ~l~~~~~~v~p~L~~~---l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~ 354 (1827)
.+.+.+...+..+... -...+|.-|.+|+..++++......... +.......-...+.+..+ |+|-+. .
T Consensus 245 ~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~----Gvt~~~~~v~v~~Ff~~~---v~peL~-~ 316 (370)
T PF08506_consen 245 QVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKS----GVTQTNELVDVVDFFSQH---VLPELQ-P 316 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTT----B-S-B-TTS-HHHHHHHH---TCHHHH--
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccC----CcccccccccHHHHHHHH---hHHHhc-c
Confidence 4444433333333321 1356888899999999998854321110 000000000011222222 222222 1
Q ss_pred hccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhh
Q psy14676 355 LREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAE 397 (1827)
Q Consensus 355 L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~ 397 (1827)
=..++|-+|-.|+..+......+|. +++..++|.+...|+
T Consensus 317 ~~~~~piLka~aik~~~~Fr~~l~~---~~l~~~~~~l~~~L~ 356 (370)
T PF08506_consen 317 DVNSHPILKADAIKFLYTFRNQLPK---EQLLQIFPLLVNHLQ 356 (370)
T ss_dssp SS-S-HHHHHHHHHHHHHHGGGS-H---HHHHHHHHHHHHHTT
T ss_pred cCCCCcchHHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHhC
Confidence 1146677888888888888888774 577889999999984
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.56 Score=55.25 Aligned_cols=228 Identities=21% Similarity=0.265 Sum_probs=141.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhh-hhhh-hhhhhHHHHHHhhhhhhhHHHHHHHHHHHhcCCCccccc-hhhhhhHhhhh
Q psy14676 1146 DIDQEVKERAISCMGQIICNLGD-YLKS-ELPVCLPILLDRLRNEITRLTTVKALTKIAASPLRIDLR-PILTDGIPILG 1222 (1827)
Q Consensus 1146 D~d~eVre~Ai~alg~l~~~~g~-~l~~-~l~~lL~~Ll~~L~~e~tR~~av~al~~ia~~~~~~dl~-p~~~~~l~~L~ 1222 (1827)
+.|..+|.+|+.+|+.+++.+.. .+.. ....++.-+.+|+.+...=..+++++..+..... +. .....++..+.
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~---~~~~~~~~i~~~l~ 86 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN---FSPESAVKILRSLF 86 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC---CChhhHHHHHHHHH
Confidence 77899999999999999999974 4553 7788999999999877765666888888775321 11 11223333333
Q ss_pred hhh--cchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcC-CCChhHHHHHHHHHHHHHHhCCCccchhhHH
Q psy14676 1223 SFL--RKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVS-ESDLHIAQLTLTLLTSIAKIQPNALVEPAAA 1299 (1827)
Q Consensus 1223 ~~L--rk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~-d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~ 1299 (1827)
... ++.-...|...+..|..++.++...+. .+-...+..+...+. +.|+.-.-.++.++..++...+-.
T Consensus 87 ~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~-~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~------- 158 (262)
T PF14500_consen 87 QNVDVQSLPQSTRYAVYQLLDSLLENHREALQ-SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDIS------- 158 (262)
T ss_pred HhCChhhhhHHHHHHHHHHHHHHHHHhHHHHH-hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccc-------
Confidence 211 233467899999999999998765441 111234444445554 578888888888888887766521
Q ss_pred hhhhhcccccCCCchhhHHHHHHHhcC--------CC----CHhHHHHHHHHHhhhhhhhhh-hhHHHHHHhhhcC-chh
Q psy14676 1300 SILPQIGRHTDLTSVADLKQVILNAFT--------PT----SEEVKSAASYTLGSIAVGNLQ-QYVPFVLKEIENQ-PKR 1365 (1827)
Q Consensus 1300 ~~lgeiG~~~~~~~~~~l~~~~l~~~~--------~~----s~eVr~aAa~aLG~i~~~~l~-~~LP~Il~~i~~~-~~~ 1365 (1827)
...+++++++.-.|- |+ .++++.+--.+|. +...+. -.+|.+++.+.+. +..
T Consensus 159 ------------~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~ 224 (262)
T PF14500_consen 159 ------------EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSV 224 (262)
T ss_pred ------------hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHH
Confidence 011233333333331 11 1233332222222 112233 3678888887653 334
Q ss_pred hHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhh
Q psy14676 1366 QYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFL 1403 (1827)
Q Consensus 1366 q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~ 1403 (1827)
+-=+|..|...+.. .|...+.+|+..||+.+-.
T Consensus 225 K~D~L~tL~~c~~~-----y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 225 KLDSLQTLKACIEN-----YGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHH
Confidence 45567788887763 2467889999999998854
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.049 Score=60.00 Aligned_cols=137 Identities=23% Similarity=0.256 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHhh-ccCCCCchhHHHHHHH------------hhhcCCCCHHHHHHHHHHHHHHHHhhchhH------
Q psy14676 54 VQLEALDILSDLLSR-FGALLPSFHFVILTAL------------LPQLSSPRQAVRKRTIVALSHLVMSCNLQL------ 114 (1827)
Q Consensus 54 v~~~al~iL~~l~~~-~~~~l~~~~~~il~~l------------l~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~------ 114 (1827)
+|..|+.+|..++.. ....+-+|+..++|-- -..+.||++.||-.|+.++..+.+...+-+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 688999999999998 4444555665555443 223578999999999999999988754210
Q ss_pred ---------HH--------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc-hhhHH-hHHHHHHHHHhhcccCchHH
Q psy14676 115 ---------YT--------KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG-HRFAE-HIERVMPLILKYSREEDDEL 175 (1827)
Q Consensus 115 ---------~~--------~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~-~~~~p-~l~~i~p~l~~~~~~~~del 175 (1827)
|. ++-..++..|..+.+..+....+.|++.+....| +++.+ ++..++..+...+...|.++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 11 1122333344555667788899999999999887 45543 56777777777777789999
Q ss_pred HHHHHHHHHHHHHhC
Q psy14676 176 REFCLQACEAFVQRC 190 (1827)
Q Consensus 176 Re~al~ale~~~~~~ 190 (1827)
|..++.+++.++..-
T Consensus 162 ~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 162 RVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999998887643
|
|
| >KOG1993|consensus | Back alignment and domain information |
|---|
Probab=96.04 E-value=8 Score=50.45 Aligned_cols=179 Identities=15% Similarity=0.138 Sum_probs=113.1
Q ss_pred hHHHHHHHHHHHHHhcccc--ccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCc
Q psy14676 1050 MRTTHQSNQTFNVIIQRND--IHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDF 1127 (1827)
Q Consensus 1050 ~R~~a~~~L~~l~~~~~~~--l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~ 1127 (1827)
.|.++..+++..+.+..+. |... +...++|-+. .-.+.+.-+|+.....+|+++.+= --
T Consensus 460 ~KDAiYaa~g~~a~~l~~~~dF~~W---------l~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq---------~~ 520 (978)
T KOG1993|consen 460 LKDAIYAAFGLAAYELSNILDFDKW---------LQEALLPELA-NDHGNSRIIRRRVAWILGQWVSVQ---------QK 520 (978)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHH---------HHHhhCHHhh-hcccchhHHHHHHHHHHhhhhhee---------ch
Confidence 5666677777555544332 1111 1223344333 223444556778888899998631 11
Q ss_pred chhHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHHHHh---hhhhhhhhhhhHHHHHHhhh---hhhhHHHHHHHHHH
Q psy14676 1128 APFTSDIYQCTLVRLKAADI-DQEVKERAISCMGQIICNL---GDYLKSELPVCLPILLDRLR---NEITRLTTVKALTK 1200 (1827)
Q Consensus 1128 ~~~l~~l~~~ll~~L~~~D~-d~eVre~Ai~alg~l~~~~---g~~l~~~l~~lL~~Ll~~L~---~e~tR~~av~al~~ 1200 (1827)
...-..+|.+++.-+. |. |.-||-+++.++..++.-. .+.+-|+++.+.-.+...++ .-+||......++.
T Consensus 521 ~e~k~l~Y~a~lnLL~--d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~ 598 (978)
T KOG1993|consen 521 LELKPLLYCAFLNLLQ--DQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLST 598 (978)
T ss_pred HhHHHHHHHHHHHhcC--ccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 1223457777777776 44 7789999999999998765 34566778777777766664 34679999999998
Q ss_pred HhcCCCccccchhhhhhHhhhhhhhc--chhHHHHHHHHHHHHHHHHhCCCC
Q psy14676 1201 IAASPLRIDLRPILTDGIPILGSFLR--KNQRALKLSTLLLLDTLLVNYPSA 1250 (1827)
Q Consensus 1201 ia~~~~~~dl~p~~~~~l~~L~~~Lr--k~~r~lR~~al~aL~~L~~~~~~~ 1250 (1827)
+.+.. +...+|+..++++-+-.+=+ +.+.-+|-+.+.+|..++...|+.
T Consensus 599 lI~r~-~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~q 649 (978)
T KOG1993|consen 599 LIERV-SEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQ 649 (978)
T ss_pred HHHHH-HHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccC
Confidence 88643 22334666555554433322 234559999999999999987764
|
|
| >KOG1243|consensus | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.076 Score=67.74 Aligned_cols=233 Identities=18% Similarity=0.272 Sum_probs=158.2
Q ss_pred HHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCC--chhHHHHHHHhhhcCCCC
Q psy14676 15 GLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLP--SFHFVILTALLPQLSSPR 92 (1827)
Q Consensus 15 ~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~--~~~~~il~~ll~~L~~~~ 92 (1827)
+|...+.++|... +.++++|.|+..+.-.. ++-+.|.-++. ++..+. +|...+++.+++.+..++
T Consensus 277 ~L~~~l~~~pe~i------~~~kvlp~Ll~~~~~g~------a~~~~ltpl~k-~~k~ld~~eyq~~i~p~l~kLF~~~D 343 (690)
T KOG1243|consen 277 GLIDRLDNFPEEI------IASKVLPILLAALEFGD------AASDFLTPLFK-LGKDLDEEEYQVRIIPVLLKLFKSPD 343 (690)
T ss_pred HHHHHHhhhhHHH------HHHHHHHHHHHHhhccc------cchhhhhHHHH-hhhhccccccccchhhhHHHHhcCcc
Confidence 5666778888754 57899999999886542 22333333322 222222 266789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhchhHH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccC
Q psy14676 93 QAVRKRTIVALSHLVMSCNLQLY-TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREE 171 (1827)
Q Consensus 93 ~~VRk~Ai~aL~~l~~~~~~~~~-~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~ 171 (1827)
..||-.=..=+..++.+++++.+ .+.++++..++.. .++.+|...+.++..++...+++- -=.+++..+-....|+
T Consensus 344 r~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~D-Tn~~Lre~Tlksm~~La~kL~~~~--Ln~Ellr~~ar~q~d~ 420 (690)
T KOG1243|consen 344 RQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLD-TNATLREQTLKSMAVLAPKLSKRN--LNGELLRYLARLQPDE 420 (690)
T ss_pred hHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhccc-CCHHHHHHHHHHHHHHHhhhchhh--hcHHHHHHHHhhCccc
Confidence 99999999999999999998765 4578899988875 468899999999999998888771 1235666666555567
Q ss_pred chHHHHHHHHHHHHHHHhCCCccccchHHHH-----HHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCC
Q psy14676 172 DDELREFCLQACEAFVQRCPKEITPHIQSIT-----ELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGED 246 (1827)
Q Consensus 172 ~delRe~al~ale~~~~~~p~e~~p~l~~ii-----~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~ 246 (1827)
+.++| .+-..|-..+.||+...+ ...+..-..||
T Consensus 421 ~~~ir--------tntticlgki~~~l~~~~R~~vL~~aftralkdp--------------------------------- 459 (690)
T KOG1243|consen 421 HGGIR--------TNTTICLGKIAPHLAASVRKRVLASAFTRALKDP--------------------------------- 459 (690)
T ss_pred cCccc--------ccceeeecccccccchhhhccccchhhhhhhcCC---------------------------------
Confidence 77777 445567667788864332 11110000010
Q ss_pred CCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhh
Q psy14676 247 DNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGT 316 (1827)
Q Consensus 247 ~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~ 316 (1827)
--.-|.++..++.+..+.++ ...+-.+|+|.+.-...+.+..||..+..++-..+...
T Consensus 460 ----------f~paR~a~v~~l~at~~~~~--~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 460 ----------FVPARKAGVLALAATQEYFD--QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred ----------CCCchhhhhHHHhhcccccc--hhhhhhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence 11356666666654443322 23466788888888888999999999998888776544
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.88 E-value=7.8 Score=51.60 Aligned_cols=103 Identities=16% Similarity=0.204 Sum_probs=76.3
Q ss_pred chHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHH
Q psy14676 1035 LLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVK 1114 (1827)
Q Consensus 1035 llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~ 1114 (1827)
.++.+++-++++++..|..|+.+++.+-... .++.+++++.+++.|+.+.||..|.-++..+.+
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l~~~e----------------l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ 156 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLLRVKE----------------LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR 156 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhcChHH----------------HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh
Confidence 4667788889999999999999998653321 277899999999999999999999988888875
Q ss_pred HhccCCCCCCCCcchhHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q psy14676 1115 VIRPLTSPSSYDFAPFTSDI-YQCTLVRLKAADIDQEVKERAISCMGQIICN 1165 (1827)
Q Consensus 1115 ~l~~~~~~~~~~~~~~l~~l-~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~ 1165 (1827)
. ..+ ++.+. ...++..+ ..|.|+.|...|+.++..+-..
T Consensus 157 l--------d~~---l~~~~g~~~~l~~l-~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 157 L--------DKD---LYHELGLIDILKEL-VADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred c--------CHh---hhhcccHHHHHHHH-hhCCCchHHHHHHHHHHHhchh
Confidence 3 111 12222 12222222 2499999999999999887665
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=95.85 E-value=3 Score=55.64 Aligned_cols=339 Identities=15% Similarity=0.170 Sum_probs=170.2
Q ss_pred CCchHHHHHHhccCChhhHHHHHHHHHHHHH--hccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHH
Q psy14676 1033 SNLLPRLQESLKSNSALMRTTHQSNQTFNVI--IQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQ 1110 (1827)
Q Consensus 1033 ~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~--~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~ 1110 (1827)
..+++.|.+.|.+.+......++.+|.-+.. ..++.+.. ..++|.+.+.+..+...+...+++.+.
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~------------~giV~kL~kLl~s~~~~l~~~aLrlL~ 356 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAE------------SGIVEKLLKLLPSENEDLVNVALRLLF 356 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH------------cCCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 5689999999998888999999999985433 22333322 257888888888777888888888776
Q ss_pred HHHHHhccCCCCCCCCcchhHHH--HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhh--hhhhhHHHHHHhhh
Q psy14676 1111 QFVKVIRPLTSPSSYDFAPFTSD--IYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKS--ELPVCLPILLDRLR 1186 (1827)
Q Consensus 1111 ~lv~~l~~~~~~~~~~~~~~l~~--l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~--~l~~lL~~Ll~~L~ 1186 (1827)
.|..- .+.++.+-. ++|.+...+. |. ..+..++..+-.+... +.... ....++|.+++.+-
T Consensus 357 NLSfd---------~~~R~~mV~~GlIPkLv~LL~--d~--~~~~val~iLy~LS~d--d~~r~~f~~TdcIp~L~~~Ll 421 (708)
T PF05804_consen 357 NLSFD---------PELRSQMVSLGLIPKLVELLK--DP--NFREVALKILYNLSMD--DEARSMFAYTDCIPQLMQMLL 421 (708)
T ss_pred HhCcC---------HHHHHHHHHCCCcHHHHHHhC--CC--chHHHHHHHHHHhccC--HhhHHHHhhcchHHHHHHHHH
Confidence 65521 122222222 4444555554 32 3455566555554321 11111 12246777777664
Q ss_pred hhhh---HHHHHHHHHHHhcCCCccccchhhh-hhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHH
Q psy14676 1187 NEIT---RLTTVKALTKIAASPLRIDLRPILT-DGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVE 1262 (1827)
Q Consensus 1187 ~e~t---R~~av~al~~ia~~~~~~dl~p~~~-~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~ 1262 (1827)
.... ...++..+-.++...... .-+.+ ..++.|....-+... ...+..+..+..+.+. ........+..
T Consensus 422 ~~~~~~v~~eliaL~iNLa~~~rna--qlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~--~k~~f~~~i~~ 494 (708)
T PF05804_consen 422 ENSEEEVQLELIALLINLALNKRNA--QLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGP--LKELFVDFIGD 494 (708)
T ss_pred hCCCccccHHHHHHHHHHhcCHHHH--HHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCch--HHHHHHHHHHH
Confidence 3322 333333333344322110 00111 122322221111110 1223344444333211 11222233444
Q ss_pred hhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCc---hhhHHHHHHHhcCCC--CHhHHHHHH
Q psy14676 1263 LAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTS---VADLKQVILNAFTPT--SEEVKSAAS 1337 (1827)
Q Consensus 1263 L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~---~~~l~~~~l~~~~~~--s~eVr~aAa 1337 (1827)
|...+...+. -...+++|+.++.-... + .++.. .-.++|.+.+.+..+ .+++...+.
T Consensus 495 L~~~v~~~~~--ee~~vE~LGiLaNL~~~------------~----ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~V 556 (708)
T PF05804_consen 495 LAKIVSSGDS--EEFVVECLGILANLTIP------------D----LDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVV 556 (708)
T ss_pred HHHHhhcCCc--HHHHHHHHHHHHhcccC------------C----cCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHH
Confidence 4444444332 13444555544432100 0 11110 025777777777643 457888888
Q ss_pred HHHhhhhhh-----hhh--hhHHHHHHhhhcCchhhHHH---HHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcC
Q psy14676 1338 YTLGSIAVG-----NLQ--QYVPFVLKEIENQPKRQYLL---LHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCEC 1407 (1827)
Q Consensus 1338 ~aLG~i~~~-----~l~--~~LP~Il~~i~~~~~~q~~~---l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~ 1407 (1827)
..+|.++.. .+. .+.+.+.+.+.........+ ++++..++.|... .+.+-. -.++..-|+....+
T Consensus 557 i~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t----r~~ll~-~~~~~~ylidL~~d 631 (708)
T PF05804_consen 557 ILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET----REVLLK-ETEIPAYLIDLMHD 631 (708)
T ss_pred HHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH----HHHHHh-ccchHHHHHHHhcC
Confidence 888886532 222 46677777776533344444 4555555543211 121110 03345556666667
Q ss_pred CchhHHHHHHHHHHHhhccCC
Q psy14676 1408 QEEGTRNVVAECLGKLTLIDP 1428 (1827)
Q Consensus 1408 ~~e~vR~~aAecLGkL~~~~p 1428 (1827)
.+..+|.++-.||.-++..++
T Consensus 632 ~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 632 KNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred CCHHHHHHHHHHHHHHHHhCH
Confidence 777788888888888887664
|
|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.24 Score=54.18 Aligned_cols=132 Identities=15% Similarity=0.201 Sum_probs=108.6
Q ss_pred hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHH----HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc-
Q psy14676 76 FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLY----TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG- 150 (1827)
Q Consensus 76 ~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~----~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~- 150 (1827)
....+...+...|+++++.-|-.++.-+...++.++.+.| ...+..++..|++++...+++.++.++..+.....
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3446677777888999999999999999999999976655 34567777778887778899999999999987653
Q ss_pred ------hhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHh
Q psy14676 151 ------HRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYI 209 (1827)
Q Consensus 151 ------~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l 209 (1827)
+...|+++.+++.+++..++ +...+.|+.++..++...|.-++||-.++-..+..++
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 23578999999999998764 5667789999999999999999999999888887655
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.072 Score=57.87 Aligned_cols=142 Identities=21% Similarity=0.319 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCC-----CCHHHHHHHHHHHHHHHH
Q psy14676 34 VCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSS-----PRQAVRKRTIVALSHLVM 108 (1827)
Q Consensus 34 v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~-----~~~~VRk~Ai~aL~~l~~ 108 (1827)
..+.|++.|+..+.++.++.+|.|++.+||.+ + .+++|.-. .......+ ......... .+..
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGil-G----ALDP~~~k---~~~~~~~~~~~~~~~~~~~~~~-----l~~~ 73 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGIL-G----ALDPYKHK---SIQKSLDSKSSENSNDESTDIS-----LPMM 73 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-c----ccCcHHHh---cccccCCccccccccccchhhH-----Hhhc
Confidence 46788999999997777899999999999875 2 34443211 11111111 111111111 1111
Q ss_pred h---hchhHHHH-HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHH
Q psy14676 109 S---CNLQLYTK-LIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACE 184 (1827)
Q Consensus 109 ~---~~~~~~~~-l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale 184 (1827)
. .+++.+.. .+..++.-|++..-..-...+++++..+..+.+.+..||+++++|.++..++.-++.+||..++-+.
T Consensus 74 ~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~ 153 (160)
T PF11865_consen 74 GISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLA 153 (160)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1 23344433 3455555555443344566889999999999998889999999999999998777799999988887
Q ss_pred HHHH
Q psy14676 185 AFVQ 188 (1827)
Q Consensus 185 ~~~~ 188 (1827)
.++.
T Consensus 154 ~lv~ 157 (160)
T PF11865_consen 154 DLVS 157 (160)
T ss_pred HHHH
Confidence 7765
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.11 Score=57.39 Aligned_cols=162 Identities=20% Similarity=0.290 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHHHHH-cCCchhhhHHhhhHHH------------HhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCC
Q psy14676 259 KVRRAAAKCLEAIIAT-RRDLIGDMYRLVSPPL------------IARFKEREENVKSDIFHAYMALLKGTRTFSPLTPS 325 (1827)
Q Consensus 259 kVRraAak~L~~l~~~-~~~~l~~~~~~v~p~L------------~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~ 325 (1827)
|||.+|..||.++++. .+..+..|+..++|.- .-.++|+++.||.+|+.++.++++..+.+-..
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~--- 77 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQ--- 77 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHH---
Confidence 6999999999999999 4556666777666643 23457999999999999999999654321000
Q ss_pred CCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCC
Q psy14676 326 DPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLG 405 (1827)
Q Consensus 326 ~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~ 405 (1827)
.+......+....+...+..++..+++. +...++.+
T Consensus 78 -Ae~~~~~~~sFtslS~tLa~~i~~lH~~-------------------------------------Ll~~L~~E------ 113 (182)
T PF13251_consen 78 -AEESKGPSGSFTSLSSTLASMIMELHRG-------------------------------------LLLALQAE------ 113 (182)
T ss_pred -HHhcCCCCCCcccHHHHHHHHHHHHHHH-------------------------------------HHHHHhcc------
Confidence 0000000011122333333333333332 22223110
Q ss_pred CCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh-hhhh-hhHHhhhhhHHHhhcchhhhhHH
Q psy14676 406 GEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR-DLIG-DMYRLVSPPLIARFKEREENVKS 483 (1827)
Q Consensus 406 ~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~-~~f~-~~~~~l~~~L~~~~~d~~~~Vr~ 483 (1827)
.+-.+....++|+..++...+ .-+. .++..++..+...+.+++.+||.
T Consensus 114 ------------------------------~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v 163 (182)
T PF13251_consen 114 ------------------------------KSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRV 163 (182)
T ss_pred ------------------------------cccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHH
Confidence 112244456777777777777 4444 46777778888888889999999
Q ss_pred HHHHHHHHHHhhcc
Q psy14676 484 DIFHAYMALLKGTR 497 (1827)
Q Consensus 484 ~a~~~l~~L~~~~g 497 (1827)
.++-+++.++...+
T Consensus 164 ~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 164 AALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHcCCC
Confidence 99999999987644
|
|
| >KOG0413|consensus | Back alignment and domain information |
|---|
Probab=95.52 E-value=13 Score=49.20 Aligned_cols=129 Identities=13% Similarity=0.229 Sum_probs=94.4
Q ss_pred cchhhHHHHHHhhhcccC---CCCchHHHHHHhc-cCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHH
Q psy14676 1014 EGTRNVVAECLGKLTLID---PSNLLPRLQESLK-SNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSP 1089 (1827)
Q Consensus 1014 ~~vR~~a~e~Lg~L~~~~---~~~llP~L~~~L~-s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~ 1089 (1827)
+.+|.++.-+||+++... ...++|.+.+-|. +.....|-..+.+++.+..+-.. .++..+|.
T Consensus 945 ~~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa--------------m~d~YiP~ 1010 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA--------------MTDRYIPM 1010 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH--------------HHHHhhHH
Confidence 345666777788776553 2458999999884 44566777777777766555322 26678999
Q ss_pred HHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhh
Q psy14676 1090 VIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGD 1168 (1827)
Q Consensus 1090 l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~ 1168 (1827)
|-.+++|+.+-||..++..+..|.+ .++..|-..||=-++..+- |....+|.-|=-+++.++..-..
T Consensus 1011 I~~~L~Dp~~iVRrqt~ilL~rLLq----------~~~vKw~G~Lf~Rf~l~l~--D~~edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1011 IAASLCDPSVIVRRQTIILLARLLQ----------FGIVKWNGELFIRFMLALL--DANEDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHh----------hhhhhcchhhHHHHHHHHc--ccCHHHHHHHHHHHHHHHhhcCc
Confidence 9999999999999999998888774 3444555555555555565 88899999999999999876544
|
|
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=7.9 Score=56.74 Aligned_cols=155 Identities=7% Similarity=0.102 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHHHHHHhhh----cCCCCHHHHHHHHHHHHHHHHhh-chh-----HH-HHHHHHHHH
Q psy14676 56 LEALDILSDLLSRFGALLPSFHFVILTALLPQ----LSSPRQAVRKRTIVALSHLVMSC-NLQ-----LY-TKLIDFLLE 124 (1827)
Q Consensus 56 ~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~----L~~~~~~VRk~Ai~aL~~l~~~~-~~~-----~~-~~l~~~ll~ 124 (1827)
.=+|.-|.+++.+--.-+.-.+..+...+-+. -.+++..|+..|+.+|..++.-. +.+ .| ..++.++..
T Consensus 1110 ~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~ 1189 (1780)
T PLN03076 1110 VFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVI 1189 (1780)
T ss_pred hhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHH
Confidence 34555566665554433322345444444333 34567788888888888877633 221 12 234555554
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhC----CCccccchHH
Q psy14676 125 GLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRC----PKEITPHIQS 200 (1827)
Q Consensus 125 ~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~----p~e~~p~l~~ 200 (1827)
-+....+.++|+.+++|+..+..+.++.+..-+..|+.++-....++.+++-+.|++.+..++... +.--...+..
T Consensus 1190 im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~D 1269 (1780)
T PLN03076 1190 VMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTD 1269 (1780)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHH
Confidence 455556678999999999999999999998889999998888888888888888888887665531 2111123445
Q ss_pred HHHHHHHHhc
Q psy14676 201 ITELCLTYIT 210 (1827)
Q Consensus 201 ii~~ll~~l~ 210 (1827)
+|..+.++.+
T Consensus 1270 lV~cL~~Fa~ 1279 (1780)
T PLN03076 1270 CVNCLIAFTN 1279 (1780)
T ss_pred HHHHHHHHHh
Confidence 5665555543
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.17 Score=66.52 Aligned_cols=154 Identities=12% Similarity=0.181 Sum_probs=103.2
Q ss_pred HHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCCc---chHHHHHhhhcCCHH
Q psy14676 1369 LLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSN---LLPRLQESLKSNSAL 1445 (1827)
Q Consensus 1369 ~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~~---~lP~L~~~l~~~~~~ 1445 (1827)
-..|+|-+|..... | ..++.+++.+++...+.+-.++...=.=|-+.+..+|+. .++.+++=++++++.
T Consensus 36 kidAmK~iIa~M~~---G-----~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~ 107 (757)
T COG5096 36 KIDAMKKIIAQMSL---G-----EDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEE 107 (757)
T ss_pred HHHHHHHHHHHHhc---C-----CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHH
Confidence 46788888875422 2 236777888888776656567777766666667777753 236666667788888
Q ss_pred HHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhh
Q psy14676 1446 MRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNK 1525 (1827)
Q Consensus 1446 ~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~ 1525 (1827)
+|.+++..+.-+= + +.+...+++.+.++++|+.+.||.+|+-|++++-+
T Consensus 108 iR~~AlR~ls~l~-------~-----------------------~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~- 156 (757)
T COG5096 108 IRGFALRTLSLLR-------V-----------------------KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR- 156 (757)
T ss_pred HHHHHHHHHHhcC-------h-----------------------HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh-
Confidence 8887665554331 1 11345678999999999999999999999999974
Q ss_pred hhhhhHHHH-HHHHHhhhcccccccccCCccchhHHHHHHHhhh
Q psy14676 1526 VKEFQVETI-VDALCSNMVSDKEQLRDISSIGLKTVISVVYCLG 1568 (1827)
Q Consensus 1526 l~~~~~~~~-v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~ 1568 (1827)
++++..... ....+..+..|++ +.|.+-|+.+|...
T Consensus 157 ld~~l~~~~g~~~~l~~l~~D~d-------P~Vi~nAl~sl~~i 193 (757)
T COG5096 157 LDKDLYHELGLIDILKELVADSD-------PIVIANALASLAEI 193 (757)
T ss_pred cCHhhhhcccHHHHHHHHhhCCC-------chHHHHHHHHHHHh
Confidence 333333322 2333334444444 49999999999765
|
|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.16 Score=55.63 Aligned_cols=94 Identities=18% Similarity=0.203 Sum_probs=82.9
Q ss_pred HHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhH
Q psy14676 283 YRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRT 362 (1827)
Q Consensus 283 ~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~v 362 (1827)
|+..+|.+...+.|-++..|.-|..++..+++. + ....+-+.+|+++..+-+.|..++++|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~-~------------------~~~kilPvlPqLI~plk~AL~tr~~~V 96 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLER-G------------------GGEKILPVLPQLIIPLKRALNTRDPEV 96 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHh-c------------------chhHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 778899999999999999999999999999964 1 225678899999999999999999999
Q ss_pred HHHHHHHHHHH---HHhCcccccCchhhHHHHHHHH
Q psy14676 363 RQDCLALLREL---VQTLPGCLAPSLPALIPDVTSV 395 (1827)
Q Consensus 363 R~a~~~ll~~L---~~vl~~~l~~~l~~Llp~i~~~ 395 (1827)
..+++..|..| ...+|.++.+|..+|+|.+--.
T Consensus 97 ~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f 132 (183)
T PF10274_consen 97 FCATLKALQQLVTSSDMVGEALVPYYRQLLPVLNLF 132 (183)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999 6777889999999999987644
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.11 Score=60.76 Aligned_cols=141 Identities=18% Similarity=0.167 Sum_probs=95.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc--hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh-HH
Q psy14676 39 TGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS--FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ-LY 115 (1827)
Q Consensus 39 ~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~--~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~-~~ 115 (1827)
+.+|+..++...+|.+++.++.+++.... |... +. .+...++.+...|.+|++.||.+|+.|+.+++...++. ..
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~n-q~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAA-FPFN-QDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhH-HHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 36677777777799999999999998643 2210 11 12246777888899999999999999999998876543 34
Q ss_pred HHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHhc--hhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHH
Q psy14676 116 TKLIDFLLEGLTT-NKSTSTNRTYIQCFAAICRQAG--HRFAEHIERVMPLILKYSREEDDELREFCLQACEA 185 (1827)
Q Consensus 116 ~~l~~~ll~~L~~-~~~~~~r~~ai~~l~~la~~~~--~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~ 185 (1827)
..++.++.+.+.. .-+..++...+.+|..++-... +.+.+|++.+ +..+...+..+|..++..+-.
T Consensus 92 k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~l----l~LL~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 92 KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDL----LSLLSSGSEKTKVQVLKVLVN 160 (254)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHH----HHHHHcCChHHHHHHHHHHHH
Confidence 5567777776543 3356788888899998864322 3345555544 444555677777666554433
|
|
| >KOG0889|consensus | Back alignment and domain information |
|---|
Probab=95.09 E-value=38 Score=51.83 Aligned_cols=119 Identities=11% Similarity=0.253 Sum_probs=76.4
Q ss_pred hhcCCCC--HHHHHHHHHHHHHHHHhhc-hh---HHHHHHHHHHHhccC--------CCCHHHHHHHHHHHHHHHHHhch
Q psy14676 86 PQLSSPR--QAVRKRTIVALSHLVMSCN-LQ---LYTKLIDFLLEGLTT--------NKSTSTNRTYIQCFAAICRQAGH 151 (1827)
Q Consensus 86 ~~L~~~~--~~VRk~Ai~aL~~l~~~~~-~~---~~~~l~~~ll~~L~~--------~~~~~~r~~ai~~l~~la~~~~~ 151 (1827)
+.|.|++ ...|-+-..=+....+.+. ++ .+..+++.++..|.. .+....|..+++.+..+. ..+
T Consensus 12 ~~l~d~~~~~~~klk~~~E~~~~le~~~~~~~~~~l~~~ip~~l~~l~~~~~~~~~~~~~~~lR~~~Leil~r~~--~~e 89 (3550)
T KOG0889|consen 12 RRLVDVNLPIESKLKMLVEIRDFLENLFSPESYLFLEMLIPLLLNFLENTEKSFSAESPEQELRNLVLEILNRLP--HNE 89 (3550)
T ss_pred HHhccCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcccCchhhhcCcHHHHHHHHHHHHHhcc--cHH
Confidence 3455543 3566666666666666443 22 245566666666632 233457777877777664 346
Q ss_pred hhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCC----ccccchHHHHHHHH
Q psy14676 152 RFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPK----EITPHIQSITELCL 206 (1827)
Q Consensus 152 ~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~----e~~p~l~~ii~~ll 206 (1827)
.|.||..+++..++.++..|.+|---.|+-.+..+.+.... ++.||+..++.+..
T Consensus 90 ~~~~~~~~~~~~~~~vl~~dNeen~~l~lkii~~l~r~f~~~~~~~v~~fl~~V~~ly~ 148 (3550)
T KOG0889|consen 90 VFKPFSQELLKVLMRVLTNDNEENAILCLKIITDLFRQFKSLVEQHVQPFLDIVIDLYK 148 (3550)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999988888777777777666664432 45566665555443
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.032 Score=42.57 Aligned_cols=31 Identities=29% Similarity=0.518 Sum_probs=27.1
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhh
Q psy14676 80 ILTALLPQLSSPRQAVRKRTIVALSHLVMSC 110 (1827)
Q Consensus 80 il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~ 110 (1827)
+++.+++.++|+++.||..|+.|++.+++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 5788999999999999999999999998864
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG1077|consensus | Back alignment and domain information |
|---|
Probab=95.02 E-value=16 Score=47.17 Aligned_cols=288 Identities=12% Similarity=0.161 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCC-chhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhch
Q psy14676 34 VCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLP-SFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNL 112 (1827)
Q Consensus 34 v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~-~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~ 112 (1827)
+.+.++..+.+-+.+. ++....-||.+++.+=++ .+. .+..+|-..|+. .+...-||++|+-|+-.+-...++
T Consensus 108 l~klvin~iknDL~sr-n~~fv~LAL~~I~niG~r---e~~ea~~~DI~KlLvS--~~~~~~vkqkaALclL~L~r~spD 181 (938)
T KOG1077|consen 108 LMKLVINSIKNDLSSR-NPTFVCLALHCIANIGSR---EMAEAFADDIPKLLVS--GSSMDYVKQKAALCLLRLFRKSPD 181 (938)
T ss_pred HHHHHHHHHHhhhhcC-CcHHHHHHHHHHHhhccH---hHHHHhhhhhHHHHhC--CcchHHHHHHHHHHHHHHHhcCcc
Confidence 3444444444444332 444455666666544222 111 122333332221 234679999999999998887655
Q ss_pred hHH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHH-H------
Q psy14676 113 QLY-TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQAC-E------ 184 (1827)
Q Consensus 113 ~~~-~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~al-e------ 184 (1827)
-.- ....+.++.-|.+ .+-.+.-.+...+..++...++...-.+..-+..+...+.....++.++..+.. .
T Consensus 182 l~~~~~W~~riv~LL~D-~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 182 LVNPGEWAQRIVHLLDD-QHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred ccChhhHHHHHHHHhCc-cccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence 321 2345556655543 335566667777778887777665544444444444444433334344433221 0
Q ss_pred --HHHHhCCCcc-ccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHH
Q psy14676 185 --AFVQRCPKEI-TPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVR 261 (1827)
Q Consensus 185 --~~~~~~p~e~-~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVR 261 (1827)
.++..||..- .+-...+...+-+.+..- + +--.+-+|.
T Consensus 261 l~rlLq~~p~~~D~~~r~~l~evl~~iLnk~-~--------------------------------------~~~~~k~vq 301 (938)
T KOG1077|consen 261 LLRLLQIYPTPEDPSTRARLNEVLERILNKA-Q--------------------------------------EPPKSKKVQ 301 (938)
T ss_pred HHHHHHhCCCCCCchHHHHHHHHHHHHHhcc-c--------------------------------------cCccccchH
Confidence 1111222110 011111111111111000 0 000011122
Q ss_pred HHHHH---HHHH--HHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCh
Q psy14676 262 RAAAK---CLEA--IIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSP 336 (1827)
Q Consensus 262 raAak---~L~~--l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~ 336 (1827)
..-|+ .+++ ++.+. +.-.+.+...+..|-+.+.+||.|+|.-++..+..++.. +..
T Consensus 302 ~~na~naVLFeaI~l~~h~-D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss------------------~~s 362 (938)
T KOG1077|consen 302 HSNAKNAVLFEAISLAIHL-DSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS------------------EFS 362 (938)
T ss_pred hhhhHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc------------------cch
Confidence 11111 1222 22222 112346777778888888999999999999999888842 223
Q ss_pred HhhHHhhhHHHHHHHHHHhc-cCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHh
Q psy14676 337 LCLLSTQVPSLVKALQCQLR-EKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVA 396 (1827)
Q Consensus 337 ~~~l~~~lp~Iv~~l~~~L~-d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L 396 (1827)
.+.+..+.. .++..|+ +++..+|+-+..+|..++.+- ....|+..+++-|
T Consensus 363 ~davK~h~d----~Ii~sLkterDvSirrravDLLY~mcD~~------Nak~IV~elLqYL 413 (938)
T KOG1077|consen 363 IDAVKKHQD----TIINSLKTERDVSIRRRAVDLLYAMCDVS------NAKQIVAELLQYL 413 (938)
T ss_pred HHHHHHHHH----HHHHHhccccchHHHHHHHHHHHHHhchh------hHHHHHHHHHHHH
Confidence 345555544 4555566 888999999999999998763 4467777777776
|
|
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.69 Score=55.42 Aligned_cols=155 Identities=15% Similarity=0.217 Sum_probs=115.7
Q ss_pred HHHHHHHHh-hCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCC------CchhHHHHHHHh
Q psy14676 13 SIGLKTVIS-ELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALL------PSFHFVILTALL 85 (1827)
Q Consensus 13 ~~~Lktvi~-~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l------~~~~~~il~~ll 85 (1827)
+..+.-++. .+..+ .-...+..++|.++..+++. ++.+|..++.+|..++.+..+.. .+...-+.+++.
T Consensus 97 ~~~l~w~v~~~~~~~---~i~~~~~liiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~ 172 (282)
T PF10521_consen 97 SHVLSWIVLSQLDRP---WISQHWPLIIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALF 172 (282)
T ss_pred HHHHHHHHHhcCCcc---hHHHhhhHHHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHH
Confidence 456666666 55443 33467889999999999865 89999999999999999887654 123456666677
Q ss_pred hhcC--------CCCHHHHHHHHHHHHHHHHhhc-------hhHHHHHH-HHHHHhccCCC---CHHHHHHHHHHHHHHH
Q psy14676 86 PQLS--------SPRQAVRKRTIVALSHLVMSCN-------LQLYTKLI-DFLLEGLTTNK---STSTNRTYIQCFAAIC 146 (1827)
Q Consensus 86 ~~L~--------~~~~~VRk~Ai~aL~~l~~~~~-------~~~~~~l~-~~ll~~L~~~~---~~~~r~~ai~~l~~la 146 (1827)
++|. ++...+=..|..|+-.++.... ...+.+.+ +.++..+.-.. .+.++..+++.+..+.
T Consensus 173 ~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i 252 (282)
T PF10521_consen 173 PCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPII 252 (282)
T ss_pred HHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHH
Confidence 7765 4556788899999999977532 11233333 33666553323 4789999999999999
Q ss_pred HHhchhhHHhHHHHHHHHHhhcccC
Q psy14676 147 RQAGHRFAEHIERVMPLILKYSREE 171 (1827)
Q Consensus 147 ~~~~~~~~p~l~~i~p~l~~~~~~~ 171 (1827)
+..|-....|+..++|.+.+++++.
T Consensus 253 ~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 253 DELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHhccHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999988754
|
|
| >KOG1058|consensus | Back alignment and domain information |
|---|
Probab=94.82 E-value=19 Score=46.98 Aligned_cols=264 Identities=17% Similarity=0.160 Sum_probs=142.4
Q ss_pred hhccccchhhHHHHHHhhhccc-CCCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhh
Q psy14676 1009 CECQEEGTRNVVAECLGKLTLI-DPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLL 1087 (1827)
Q Consensus 1009 l~~~e~~vR~~a~e~Lg~L~~~-~~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Li 1087 (1827)
|..+.+-+|-...+.|++|-.. +.+.++|.++++|....+.+|..|+.++..++..+. . ++|-.|.|+
T Consensus 108 LQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~-~----------L~pDapeLi 176 (948)
T KOG1058|consen 108 LQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE-H----------LIPDAPELI 176 (948)
T ss_pred ccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh-h----------hcCChHHHH
Confidence 4567777886666777776544 348899999999999999999999998887766632 2 333377788
Q ss_pred HHHHHhhcCCchhhHHHHHHH---------HHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy14676 1088 SPVIASVGDNFYKITAEALLV---------LQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISC 1158 (1827)
Q Consensus 1088 p~l~~~l~D~~~~V~~eAl~~---------l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~a 1158 (1827)
..++..=.|+. --+.|+-. +..+...+.. -+.+.+.++-++-.++.+.. ...++.|.+-+.|
T Consensus 177 ~~fL~~e~Dps--CkRNAFi~L~~~D~ErAl~Yl~~~idq-----i~~~~~~LqlViVE~Irkv~--~~~p~~~~~~i~~ 247 (948)
T KOG1058|consen 177 ESFLLTEQDPS--CKRNAFLMLFTTDPERALNYLLSNIDQ-----IPSFNDSLQLVIVELIRKVC--LANPAEKARYIRC 247 (948)
T ss_pred HHHHHhccCch--hHHHHHHHHHhcCHHHHHHHHHhhHhh-----ccCccHHHHHHHHHHHHHHH--hcCHHHhhHHHHH
Confidence 88776555544 22333221 1122222211 12232333333222333222 2345666777777
Q ss_pred HHHHHHHhhh------------------hhhhhhhhhHHHHHHhhhhhhh-----HHHHHHHHHHHhcCCCccccchhhh
Q psy14676 1159 MGQIICNLGD------------------YLKSELPVCLPILLDRLRNEIT-----RLTTVKALTKIAASPLRIDLRPILT 1215 (1827)
Q Consensus 1159 lg~l~~~~g~------------------~l~~~l~~lL~~Ll~~L~~e~t-----R~~av~al~~ia~~~~~~dl~p~~~ 1215 (1827)
+-.++..... .+..--..++..+.+.-.|..- |+.+.++.. ..++.
T Consensus 248 i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~-----------~~il~ 316 (948)
T KOG1058|consen 248 IYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALH-----------EKILQ 316 (948)
T ss_pred HHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhh-----------HHHHH
Confidence 7777765422 1111112222222222222111 444444211 12344
Q ss_pred hhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhc-------CCCChhHHHHHHHHHHHHHHh
Q psy14676 1216 DGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLV-------SESDLHIAQLTLTLLTSIAKI 1288 (1827)
Q Consensus 1216 ~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll-------~d~D~~l~~~al~~L~~l~~~ 1288 (1827)
+.+-.+.+.|...+-.+|.=++...-.|+.+.. +..++..|..=+ .|....-|+..+..+...+..
T Consensus 317 ~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN-------vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~ 389 (948)
T KOG1058|consen 317 GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN-------VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVK 389 (948)
T ss_pred HHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc-------HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhc
Confidence 444445566666666777766665544444311 223333332111 234456688877777777666
Q ss_pred CCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHh
Q psy14676 1289 QPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEE 1331 (1827)
Q Consensus 1289 ~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~e 1331 (1827)
+|.. -..+++.++..+.|.++.
T Consensus 390 Fp~~---------------------aatvV~~ll~fisD~N~~ 411 (948)
T KOG1058|consen 390 FPEV---------------------AATVVSLLLDFISDSNEA 411 (948)
T ss_pred ChHH---------------------HHHHHHHHHHHhccCCHH
Confidence 5531 246888888888887754
|
|
| >KOG1525|consensus | Back alignment and domain information |
|---|
Probab=94.79 E-value=7 Score=55.09 Aligned_cols=150 Identities=15% Similarity=0.211 Sum_probs=91.8
Q ss_pred hHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHh
Q psy14676 282 MYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIR 361 (1827)
Q Consensus 282 ~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~ 361 (1827)
.+-.|.|.|..-+....+.+|..|+...|.+...-. ..+...-+.+....+..+.|.++.
T Consensus 256 ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~--------------------~~l~~~~~~~~~~fl~r~~D~~~~ 315 (1266)
T KOG1525|consen 256 LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKD--------------------SQLSETYDDLWSAFLGRFNDISVE 315 (1266)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcch--------------------hhhcccchHHHHHHHHHhccCChh
Confidence 345677888888888899999999999998884321 122245677888999999999999
Q ss_pred HHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHH
Q psy14676 362 TRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVR 441 (1827)
Q Consensus 362 vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr 441 (1827)
||..|......+...-|. +..+....+.-. .. + .++. =|+|
T Consensus 316 vR~~~v~~~~~~l~~~~~--------~~~~~~~~~~l~------~~------~-------------~D~~------~rir 356 (1266)
T KOG1525|consen 316 VRMECVESIKQCLLNNPS--------IAKASTILLALR------ER------D-------------LDED------VRVR 356 (1266)
T ss_pred hhhhHHHHhHHHHhcCch--------hhhHHHHHHHHH------hh------c-------------CChh------hhhe
Confidence 999999776655544322 222221111100 00 0 0000 1122
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHh
Q psy14676 442 RAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLK 494 (1827)
Q Consensus 442 ~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~ 494 (1827)
.-++-...... .+-..+.+.++..+...+.|..++||..|+..+.++-+
T Consensus 357 ~~v~i~~~~v~----~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 357 TQVVIVACDVM----KFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred eeEEEEEeehh----HhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 22111111111 11123334467777788999999999999999999987
|
|
| >KOG0392|consensus | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.29 Score=65.71 Aligned_cols=178 Identities=15% Similarity=0.086 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhh
Q psy14676 9 RDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVS-VQLEALDILSDLLSRFGALLPSFHFVILTALLPQ 87 (1827)
Q Consensus 9 Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~-v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~ 87 (1827)
|.-+-++|+++...+.+ +++.. ...|-..|+..++...+.+ .-...+.++..+....+..+.+ .-+.++.++..
T Consensus 750 rrgael~L~~l~~~fg~---sl~~k-lp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~ 824 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGG---SLAAK-LPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFF 824 (1549)
T ss_pred hhhHHHHHHHHHHHhhH---HHHHh-cchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHh
Confidence 77788899999888754 23321 1122233344443221111 1112223333333233333222 22678888888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhh
Q psy14676 88 LSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKY 167 (1827)
Q Consensus 88 L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~ 167 (1827)
+.++.+.+|..|+.|++.+......+.....+..++.-+...++..-|..+...+.-+.......+-||..-++|.++..
T Consensus 825 ~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ 904 (1549)
T KOG0392|consen 825 VRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRR 904 (1549)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcc
Confidence 99999999999999999999988777666666666665554444445566666777777777788889999999999999
Q ss_pred cccCchHHHHHHHHHHHHHHHhCC
Q psy14676 168 SREEDDELREFCLQACEAFVQRCP 191 (1827)
Q Consensus 168 ~~~~~delRe~al~ale~~~~~~p 191 (1827)
++++.|.+|+.+..++..++...|
T Consensus 905 msd~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 905 MSDQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred cccchHHHHHHHHHHHHHHhcccc
Confidence 999999999998887766665444
|
|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.14 Score=56.08 Aligned_cols=122 Identities=12% Similarity=0.080 Sum_probs=81.2
Q ss_pred CCchHHHHHHhccCChhhHHHHHHHHHHHHHh-ccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHH
Q psy14676 1033 SNLLPRLQESLKSNSALMRTTHQSNQTFNVII-QRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQ 1111 (1827)
Q Consensus 1033 ~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~-~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~ 1111 (1827)
..++|.+.+.+......-|.-|...+..+..+ +++.+.|. +++|++++..+++.+++.|...++.+++.
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPv----------lPqLI~plk~AL~tr~~~V~~~~L~~Lq~ 106 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPV----------LPQLIIPLKRALNTRDPEVFCATLKALQQ 106 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHH----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34566666667666666666666666655555 55555555 99999999999999999999999999999
Q ss_pred HHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhc---------CCCHHHHHHHHHHHHHHHHHhhh
Q psy14676 1112 FVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAA---------DIDQEVKERAISCMGQIICNLGD 1168 (1827)
Q Consensus 1112 lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~---------D~d~eVre~Ai~alg~l~~~~g~ 1168 (1827)
++..-. ..++.+.||..++++.+---...+ ..+..+++..-++|..+-.+-|+
T Consensus 107 Lv~~~~----~vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~ 168 (183)
T PF10274_consen 107 LVTSSD----MVGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGP 168 (183)
T ss_pred HHHhhh----hhhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcCh
Confidence 975421 124667889888888664111111 12244555555555555555454
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >KOG2025|consensus | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.64 Score=59.18 Aligned_cols=125 Identities=18% Similarity=0.202 Sum_probs=91.0
Q ss_pred HHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHH
Q psy14676 16 LKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAV 95 (1827)
Q Consensus 16 Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~V 95 (1827)
+++++..+|.-- .......-+.-.|+.+.++. +..||-.+|.+|+-++.+.+..=......+...++.-+.|..|.|
T Consensus 66 la~fv~sl~q~d--~e~DlV~~~f~hlLRg~Esk-dk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~V 142 (892)
T KOG2025|consen 66 LARFVESLPQLD--KEEDLVAGTFYHLLRGTESK-DKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNV 142 (892)
T ss_pred HHHHHHhhhccC--chhhHHHHHHHHHHhcccCc-chhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchH
Confidence 566777777542 34456666777777777654 889999999999999986665333356678888888899999999
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q psy14676 96 RKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAA 144 (1827)
Q Consensus 96 Rk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~ 144 (1827)
|..|+.||+.+=..=.++.+ +....+..-++.+++++|||.++.++..
T Consensus 143 RiqAv~aLsrlQ~d~~dee~-~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 143 RIQAVLALSRLQGDPKDEEC-PVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred HHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 99999999998854333332 2333344445678889999999888754
|
|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.39 Score=52.64 Aligned_cols=132 Identities=18% Similarity=0.238 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCC-CCchhHHHHHHHhhhcCCCC-HHHHHHHHHHHHHHHHhh
Q psy14676 33 NVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGAL-LPSFHFVILTALLPQLSSPR-QAVRKRTIVALSHLVMSC 110 (1827)
Q Consensus 33 ~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~-l~~~~~~il~~ll~~L~~~~-~~VRk~Ai~aL~~l~~~~ 110 (1827)
+...+++-++.+.+.+. ++..|..++..+..+++..+.. +..+....+..++..|+.++ +.+++.|+.++..+....
T Consensus 21 ~~l~~l~~ri~~LL~s~-~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSK-SAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 35677778888888654 7889999999999999998554 44667789999999998754 689999999999999876
Q ss_pred chh------H----HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhc
Q psy14676 111 NLQ------L----YTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYS 168 (1827)
Q Consensus 111 ~~~------~----~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~ 168 (1827)
.+. . +..++..+++-+.+ ......++.++..+....|.-|+||...+-.++...+
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 532 2 23334444443332 4578899999999999999999999998877766543
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.46 E-value=3 Score=48.91 Aligned_cols=234 Identities=14% Similarity=0.122 Sum_probs=135.5
Q ss_pred HHHHHHHhhhcCC-CCHHHHHHHHHHHHHHHHhhchh-HHHHH-HHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc--hh
Q psy14676 78 FVILTALLPQLSS-PRQAVRKRTIVALSHLVMSCNLQ-LYTKL-IDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG--HR 152 (1827)
Q Consensus 78 ~~il~~ll~~L~~-~~~~VRk~Ai~aL~~l~~~~~~~-~~~~l-~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~--~~ 152 (1827)
++-++.++..|+. .+|.++++|..+++..+.+-... ...++ .-.++..+..++++.+|..++.++..++.... ..
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHH
Confidence 3556778888884 67999999999999987754332 22221 12344444455678999999999998875543 34
Q ss_pred hHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCC
Q psy14676 153 FAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEG 232 (1827)
Q Consensus 153 ~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~ 232 (1827)
+..|+..++..+... .-+.+++..++.+|-.+. ...+....+...++.++..+...
T Consensus 91 Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLt--v~~~~~~~l~~~i~~ll~LL~~G-------------------- 146 (254)
T PF04826_consen 91 IKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLT--VTNDYHHMLANYIPDLLSLLSSG-------------------- 146 (254)
T ss_pred HHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccC--CCcchhhhHHhhHHHHHHHHHcC--------------------
Confidence 566777666655542 235666666666665552 12222222333344444433210
Q ss_pred CCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhH-HhhhHHHHhhcCCC-CHhHHHHHHHHHH
Q psy14676 233 MDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMY-RLVSPPLIARFKER-EENVKSDIFHAYM 310 (1827)
Q Consensus 233 ~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~-~~v~p~L~~~l~e~-ee~VR~aa~~al~ 310 (1827)
+-++|.-+.++|-.++.. |.....++ .++++.++..|+.. ..++...++..+.
T Consensus 147 ------------------------~~~~k~~vLk~L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ 201 (254)
T PF04826_consen 147 ------------------------SEKTKVQVLKVLVNLSEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFE 201 (254)
T ss_pred ------------------------ChHHHHHHHHHHHHhccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHH
Confidence 015777788888887764 33333333 25677888888654 4567777777777
Q ss_pred HHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHH
Q psy14676 311 ALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQ 364 (1827)
Q Consensus 311 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~ 364 (1827)
.+-+..+..... ...++-.+++.-.+-.....+.+.+......++++||.
T Consensus 202 ni~~~~~~~~~~----~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~ 251 (254)
T PF04826_consen 202 NINENIKKEAYV----FVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKE 251 (254)
T ss_pred HHHHhhCcccce----eccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhh
Confidence 776555432111 00001112333344444555566666666678888885
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=94.33 E-value=2 Score=55.17 Aligned_cols=256 Identities=16% Similarity=0.172 Sum_probs=119.6
Q ss_pred CChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCccccccccccccCCcch
Q psy14676 868 KSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTS 947 (1827)
Q Consensus 868 ~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~ 947 (1827)
++..+++-+.+.+....+.+|+ .-.+.+..+++-+.|+|..||-.|++++ |.+-++.
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~----l~~~Ai~a~~DLcEDed~~iR~~aik~l---------------p~~ck~~---- 90 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPD----LQEEAINAQLDLCEDEDVQIRKQAIKGL---------------PQLCKDN---- 90 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GG----GHHHHHHHHHHHHT-SSHHHHHHHHHHG---------------GGG--T-----
T ss_pred CCHHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHHHhcccHHHHHHHHHhH---------------HHHHHhH----
Confidence 4567788888888777765554 6667888888888889999998886664 2222110
Q ss_pred hhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhh
Q psy14676 948 VADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKL 1027 (1827)
Q Consensus 948 ~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L 1027 (1827)
..+++.+...|.+.|..++.....++-.+|-.+
T Consensus 91 -----------------------------------------------~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~l 123 (556)
T PF05918_consen 91 -----------------------------------------------PEHVSKVADVLVQLLQTDDPVELDAVKNSLMSL 123 (556)
T ss_dssp ------------------------------------------------T-HHHHHHHHHHHTT---HHHHHHHHHHHHHH
T ss_pred -----------------------------------------------HHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 011111122222222333333333344444444
Q ss_pred cccCCCCchHHHHHHhc---cCChhhHHHHHHHHH-HHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHH
Q psy14676 1028 TLIDPSNLLPRLQESLK---SNSALMRTTHQSNQT-FNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITA 1103 (1827)
Q Consensus 1028 ~~~~~~~llP~L~~~L~---s~~~~~R~~a~~~L~-~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~ 1103 (1827)
....|...+-.+...+. +.+..+|+-++.+|. .+..-.+..+.|-.|.++ -++..+.+.+.| |++
T Consensus 124 l~~d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~-------~i~~~ikkvL~D----VTa 192 (556)
T PF05918_consen 124 LKQDPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEE-------FIVDEIKKVLQD----VTA 192 (556)
T ss_dssp HHH-HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHH-------HHHHHHHHHCTT------H
T ss_pred HhcCcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHH-------HHHHHHHHHHHh----ccH
Confidence 44444333333333332 345567888887776 444444455554312122 244555566665 555
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHh-hc---CCCHHHHHHHHHHHHHHHHHhhh-----hhhh-h
Q psy14676 1104 EALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLK-AA---DIDQEVKERAISCMGQIICNLGD-----YLKS-E 1173 (1827)
Q Consensus 1104 eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~-~~---D~d~eVre~Ai~alg~l~~~~g~-----~l~~-~ 1173 (1827)
+=+..+-.+.+.++-. +...-.+....|++.+.+... ++ -.|.+.-.+-+.|+..-+..+.. .+-. .
T Consensus 193 eEF~l~m~lL~~lk~~---~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~ 269 (556)
T PF05918_consen 193 EEFELFMSLLKSLKIY---GGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYM 269 (556)
T ss_dssp HHHHHHHHHHHTSGG------GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHH
T ss_pred HHHHHHHHHHHhCccc---cccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHH
Confidence 5555555555544310 001122345667777765442 11 12456555666666554333211 1111 2
Q ss_pred hhhhHHHHHHhhhhhhhHHHHHHHHHHHhcCCCccc
Q psy14676 1174 LPVCLPILLDRLRNEITRLTTVKALTKIAASPLRID 1209 (1827)
Q Consensus 1174 l~~lL~~Ll~~L~~e~tR~~av~al~~ia~~~~~~d 1209 (1827)
...++|.+-+. .+..|+.-+++++.++......+
T Consensus 270 ~~kvlP~l~~l--~e~~kl~lLk~lAE~s~~~~~~d 303 (556)
T PF05918_consen 270 CEKVLPKLSDL--PEDRKLDLLKLLAELSPFCGAQD 303 (556)
T ss_dssp HHHTCCCTT-------HHHHHHHHHHHHHTT----T
T ss_pred HHHhcCChhhC--ChHHHHHHHHHHHHHcCCCCccc
Confidence 23345544333 56678999999999987665444
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=94.23 E-value=13 Score=46.87 Aligned_cols=168 Identities=13% Similarity=0.131 Sum_probs=94.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchh------HHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh---
Q psy14676 43 STAIEKQEDVSVQLEALDILSDLLSRFGALLPSFH------FVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ--- 113 (1827)
Q Consensus 43 l~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~------~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~--- 113 (1827)
+..+......++..-.+..+++++..-+....-++ +.....+++.|+.++.-+...|...+..++..-...
T Consensus 59 l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~ 138 (429)
T cd00256 59 VNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEG 138 (429)
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccch
Confidence 33343344678888999999999988543221122 345666777888888899999999999998653332
Q ss_pred -HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHH-HHHHHHhCC
Q psy14676 114 -LYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQA-CEAFVQRCP 191 (1827)
Q Consensus 114 -~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~a-le~~~~~~p 191 (1827)
....++..+...|.+......+..+++|++.+.+.-..+..=.-.+.++.+...++...-.+. .-.++ +-.|+-...
T Consensus 139 ~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Q-l~Y~~ll~lWlLSF~ 217 (429)
T cd00256 139 SDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQ-LQYQSIFCIWLLTFN 217 (429)
T ss_pred hHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHH-HHHHHHHHHHHHhcc
Confidence 223344455555554334566778889999998766654211112244555554432221111 11121 234444332
Q ss_pred Cccccch--HHHHHHHHHHhcc
Q psy14676 192 KEITPHI--QSITELCLTYITY 211 (1827)
Q Consensus 192 ~e~~p~l--~~ii~~ll~~l~~ 211 (1827)
++....+ ..+|+.+.+.++.
T Consensus 218 ~~~~~~~~~~~~i~~l~~i~k~ 239 (429)
T cd00256 218 PHAAEVLKRLSLIQDLSDILKE 239 (429)
T ss_pred HHHHHhhccccHHHHHHHHHHh
Confidence 2222222 3467777666543
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG1243|consensus | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.33 Score=62.16 Aligned_cols=185 Identities=16% Similarity=0.199 Sum_probs=129.1
Q ss_pred hhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy14676 1083 YYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQI 1162 (1827)
Q Consensus 1083 l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l 1162 (1827)
-..++|.+++..+-.+..||.--|.-+..++..+.+ ..+-.+||+.+..++. |.++-+|+.++.++..+
T Consensus 328 q~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~---------~~~~d~I~phv~~G~~--DTn~~Lre~Tlksm~~L 396 (690)
T KOG1243|consen 328 QVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTK---------QILNDQIFPHVALGFL--DTNATLREQTLKSMAVL 396 (690)
T ss_pred ccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCH---------HhhcchhHHHHHhhcc--cCCHHHHHHHHHHHHHH
Confidence 556999999999998899998888777777766543 1245689999999998 88999999999999999
Q ss_pred HHHhhhh-hhhhhhhhHHHHHHhhhh-hhh--HHHHHHHHHHHhcCCCccccchhhhh--hHhhhhhhhcchhHHHHHHH
Q psy14676 1163 ICNLGDY-LKSELPVCLPILLDRLRN-EIT--RLTTVKALTKIAASPLRIDLRPILTD--GIPILGSFLRKNQRALKLST 1236 (1827)
Q Consensus 1163 ~~~~g~~-l~~~l~~lL~~Ll~~L~~-e~t--R~~av~al~~ia~~~~~~dl~p~~~~--~l~~L~~~Lrk~~r~lR~~a 1236 (1827)
+..+++. ++.++-+++ .++.. +.. |--+.-++|.|+... .+.+.+ ++..+.+.+|+.-..-|.++
T Consensus 397 a~kL~~~~Ln~Ellr~~----ar~q~d~~~~irtntticlgki~~~l-----~~~~R~~vL~~aftralkdpf~paR~a~ 467 (690)
T KOG1243|consen 397 APKLSKRNLNGELLRYL----ARLQPDEHGGIRTNTTICLGKIAPHL-----AASVRKRVLASAFTRALKDPFVPARKAG 467 (690)
T ss_pred HhhhchhhhcHHHHHHH----HhhCccccCcccccceeeeccccccc-----chhhhccccchhhhhhhcCCCCCchhhh
Confidence 9998874 444443332 33333 221 666666677666431 222222 23345566777777788888
Q ss_pred HHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCC
Q psy14676 1237 LLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQP 1290 (1827)
Q Consensus 1237 l~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~ 1290 (1827)
+.++......+. ..+....++|.+.++.-|.+..+|..+...+........
T Consensus 468 v~~l~at~~~~~---~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 468 VLALAATQEYFD---QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred hHHHhhcccccc---hhhhhhhccccccccccCcccchhhHHHHHHHHHHhhhh
Confidence 888875443322 234667889999999999999999888777666555433
|
|
| >KOG1525|consensus | Back alignment and domain information |
|---|
Probab=94.12 E-value=1.4 Score=61.71 Aligned_cols=239 Identities=18% Similarity=0.216 Sum_probs=135.1
Q ss_pred HHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccC--CCCHHHHHHHH
Q psy14676 62 LSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTT--NKSTSTNRTYI 139 (1827)
Q Consensus 62 L~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~--~~~~~~r~~ai 139 (1827)
+.+++...-......+..+|..++..|-.+....++.|..--..++..|++.....+-..+...+.. ......+..+-
T Consensus 164 ~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~h 243 (1266)
T KOG1525|consen 164 MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYH 243 (1266)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHH
Confidence 3333333333344456788888888887777777777777777777777765544333333333422 12234566777
Q ss_pred HHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCcc-ccchHHHHHHHHHHhccCCCCCcc
Q psy14676 140 QCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEI-TPHIQSITELCLTYITYDPNYNYE 218 (1827)
Q Consensus 140 ~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~-~p~l~~ii~~ll~~l~~dpn~~~~ 218 (1827)
..+-.+-+.+++. +..++|.+..-+..+++++|-.|..-.+-+...-...+ ..|- .+....+.-+
T Consensus 244 e~i~~L~~~~p~l----l~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~-~~~~~fl~r~--------- 309 (1266)
T KOG1525|consen 244 ELILELWRIAPQL----LLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYD-DLWSAFLGRF--------- 309 (1266)
T ss_pred HHHHHHHHhhHHH----HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccch-HHHHHHHHHh---------
Confidence 7777777777765 45688888877777899999666543333332111111 1111 1111111100
Q ss_pred cccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCC
Q psy14676 219 DEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKERE 298 (1827)
Q Consensus 219 ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~e 298 (1827)
-|.+-.||....++...+..+.|... ....-.+.-++.+-+
T Consensus 310 -----------------------------------~D~~~~vR~~~v~~~~~~l~~~~~~~----~~~~~~~~l~~~~~D 350 (1266)
T KOG1525|consen 310 -----------------------------------NDISVEVRMECVESIKQCLLNNPSIA----KASTILLALRERDLD 350 (1266)
T ss_pred -----------------------------------ccCChhhhhhHHHHhHHHHhcCchhh----hHHHHHHHHHhhcCC
Confidence 01223588888887776666656432 222223333444555
Q ss_pred HhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHH
Q psy14676 299 ENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQ 375 (1827)
Q Consensus 299 e~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~ 375 (1827)
++||......+..+- .....-..+|.+++.+...++|+.++||.-|+.-|.++-.
T Consensus 351 ~~~rir~~v~i~~~~----------------------v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 351 EDVRVRTQVVIVACD----------------------VMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred hhhhheeeEEEEEee----------------------hhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 555554433221110 1122233455589999999999999999999987776665
|
|
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.02 E-value=27 Score=45.54 Aligned_cols=108 Identities=12% Similarity=0.095 Sum_probs=68.1
Q ss_pred hhhhhHHHHHHHHHHHhhhcH-HHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHH--hccccchhhhhhhHHHHHHhh
Q psy14676 830 MSCNLQLTIVALSHLVMSCNL-QLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICR--QAGHRFAEHIERVMPLILKYS 906 (1827)
Q Consensus 830 ~~~~r~~Ai~aL~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~--~~~~~~~~yl~~ilP~ll~~l 906 (1827)
+|-+|.||+..++-+..-..+ ++..+..+....-+.+ ..-+|+-.+.-++..+-. ...+.|..|++..|.-++.-.
T Consensus 473 ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~n-n~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLS 551 (970)
T COG5656 473 YGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKN-NHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLS 551 (970)
T ss_pred ccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhc
Confidence 567899999999888553333 3333333333333443 333455433333333332 467889999999999999776
Q ss_pred cccchHHHHHHHHHHHHHHhhCCCccccccccccc
Q psy14676 907 REEDDELREFCLQACEAFVQRCPKEITPHIQSIGR 941 (1827)
Q Consensus 907 ~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~ 941 (1827)
.+=+-++- -..++.||++++.++.||-+++..
T Consensus 552 n~feiD~L---S~vMe~fVe~fseELspfa~eLa~ 583 (970)
T COG5656 552 NTFEIDPL---SMVMESFVEYFSEELSPFAPELAG 583 (970)
T ss_pred ccccchHH---HHHHHHHHHHhHHhhchhHHHHHH
Confidence 55332221 124688999999999999887654
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=93.99 E-value=3.2 Score=53.37 Aligned_cols=100 Identities=13% Similarity=0.073 Sum_probs=54.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q psy14676 43 STAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFL 122 (1827)
Q Consensus 43 l~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~l 122 (1827)
++..++ ++..||..|+..|-.+|.+-++ +.+.+...|.+.|+.+++......-.+|..+...-+...+..++.++
T Consensus 65 ~DLcED-ed~~iR~~aik~lp~~ck~~~~----~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i 139 (556)
T PF05918_consen 65 LDLCED-EDVQIRKQAIKGLPQLCKDNPE----HVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQI 139 (556)
T ss_dssp HHHHT--SSHHHHHHHHHHGGGG--T--T-----HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHhc-ccHHHHHHHHHhHHHHHHhHHH----HHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 344443 3666777776666666655333 34567777777777777777777777777777766666666666666
Q ss_pred HHhccCCCCHHHHHHHHHHHHHHHHHh
Q psy14676 123 LEGLTTNKSTSTNRTYIQCFAAICRQA 149 (1827)
Q Consensus 123 l~~L~~~~~~~~r~~ai~~l~~la~~~ 149 (1827)
... ..++..+|..++..|..=....
T Consensus 140 ~~~--~~~de~~Re~~lkFl~~kl~~l 164 (556)
T PF05918_consen 140 ESS--KSGDEQVRERALKFLREKLKPL 164 (556)
T ss_dssp H-----HS-HHHHHHHHHHHHHHGGGS
T ss_pred Hhc--ccCchHHHHHHHHHHHHHHhhC
Confidence 632 1234567777776665444433
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG2549|consensus | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.52 Score=58.77 Aligned_cols=130 Identities=18% Similarity=0.251 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh------HHHHHHHHHHHhc
Q psy14676 1130 FTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT------RLTTVKALTKIAA 1203 (1827)
Q Consensus 1130 ~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t------R~~av~al~~ia~ 1203 (1827)
.++-.|..+...+. +.|+..|+.|+.+|+. .+.+..++|.|+..+....+ -+.-+-.+..++.
T Consensus 204 ElQlYy~~It~a~~--g~~~~~r~eAL~sL~T---------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~r 272 (576)
T KOG2549|consen 204 ELQLYYKEITEACT--GSDEPLRQEALQSLET---------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVR 272 (576)
T ss_pred HHHHHHHHHHHHHh--cCCHHHHHHHHHhhcc---------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHH
Confidence 34444555555555 5678889999998876 35678888888888765543 2333334444444
Q ss_pred C---CCccccchhhhhhHhhhhhhh-------c---chhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCC
Q psy14676 1204 S---PLRIDLRPILTDGIPILGSFL-------R---KNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSES 1270 (1827)
Q Consensus 1204 ~---~~~~dl~p~~~~~l~~L~~~L-------r---k~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~ 1270 (1827)
+ .....++||+++++|.+...+ | +++|++|.-++..+..+++++++.+.. +..-++..+...+.|.
T Consensus 273 SLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~ 351 (576)
T KOG2549|consen 273 SLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDN 351 (576)
T ss_pred HHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCC
Confidence 3 236789999999999766532 1 678999999999999999998876543 5566777777777665
Q ss_pred C
Q psy14676 1271 D 1271 (1827)
Q Consensus 1271 D 1271 (1827)
.
T Consensus 352 ~ 352 (576)
T KOG2549|consen 352 K 352 (576)
T ss_pred C
Confidence 3
|
|
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=93.77 E-value=19 Score=52.94 Aligned_cols=262 Identities=11% Similarity=0.135 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHh-h---
Q psy14676 35 CRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMS-C--- 110 (1827)
Q Consensus 35 ~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~-~--- 110 (1827)
.++++-.+..-+.+..+.++|+-.+.++.+|+...+..+.+-+..++..+-....++++.+-+.|...+..++.. +
T Consensus 1180 QkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l 1259 (1780)
T PLN03076 1180 QNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYI 1259 (1780)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhc
Confidence 345555555555556688999999999999999999988888889999888888888888888888888877643 1
Q ss_pred c---hhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc------------------------------hhh---H
Q psy14676 111 N---LQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG------------------------------HRF---A 154 (1827)
Q Consensus 111 ~---~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~------------------------------~~~---~ 154 (1827)
+ ...|..++.-+.+.-.+..+..+--.++..|-.++.... ..+ .
T Consensus 1260 ~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 1339 (1780)
T PLN03076 1260 TETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKD 1339 (1780)
T ss_pred cccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccch
Confidence 1 234444444443333222222222333333332221110 000 0
Q ss_pred HhHHHHHHHHHhh---cccCchHHHHHHHHHHHHHHHhCCCcccc-ch----HHHHHHHHHHhccCCCCCcccccccCCC
Q psy14676 155 EHIERVMPLILKY---SREEDDELREFCLQACEAFVQRCPKEITP-HI----QSITELCLTYITYDPNYNYEDEEEGLGG 226 (1827)
Q Consensus 155 p~l~~i~p~l~~~---~~~~~delRe~al~ale~~~~~~p~e~~p-~l----~~ii~~ll~~l~~dpn~~~~ddd~~~~~ 226 (1827)
.+..--+|++..+ +.++..|||..|++.|=..+...+..|.| +. ..++-.++..++....-... +++.+
T Consensus 1340 ~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~--~~~~~- 1416 (1780)
T PLN03076 1340 DHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGG--DEPEG- 1416 (1780)
T ss_pred hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccc--ccccc-
Confidence 1122345555443 56789999999999885556666777765 32 33444444444432100000 00000
Q ss_pred CCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHH---HHcCCchhhhHHhhhHHHHhhcCCCCHhHHH
Q psy14676 227 EGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAII---ATRRDLIGDMYRLVSPPLIARFKEREENVKS 303 (1827)
Q Consensus 227 ~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~---~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~ 303 (1827)
-+.+. +.+..+...|- ......+|..++ ..+-+.+.+.++.++..|.......++.+-.
T Consensus 1417 ----~~~~~-------------~~~~~e~~~Wl-~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ 1478 (1780)
T PLN03076 1417 ----QGVDG-------------DQGELDQDAWL-YETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAG 1478 (1780)
T ss_pred ----ccccc-------------cccchhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 00000 00111234585 344445555544 3333333444445555555555666777777
Q ss_pred HHHHHHHHHHhhhc
Q psy14676 304 DIFHAYMALLKGTR 317 (1827)
Q Consensus 304 aa~~al~~ll~~~~ 317 (1827)
.+..++..++.+.+
T Consensus 1479 ig~~~l~~li~~ng 1492 (1780)
T PLN03076 1479 IGIAAFVRLMSNAG 1492 (1780)
T ss_pred HHHHHHHHHHHHhh
Confidence 77788888875543
|
|
| >KOG2933|consensus | Back alignment and domain information |
|---|
Probab=93.33 E-value=1.3 Score=51.84 Aligned_cols=113 Identities=21% Similarity=0.247 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCC
Q psy14676 345 PSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEG 424 (1827)
Q Consensus 345 p~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~ 424 (1827)
...+...++.|.++++...-.++..+..|...-+..+.+.+..++..+.+.++.
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKN-------------------------- 140 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKN-------------------------- 140 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcC--------------------------
Confidence 344566778888999999999999999999999988888888888888887731
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHh
Q psy14676 425 EDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLK 494 (1827)
Q Consensus 425 ~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~ 494 (1827)
....|-++|+.++..++..+...+...++.++-.|+....+...-||++|-+.|..++.
T Consensus 141 -----------lRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~ 199 (334)
T KOG2933|consen 141 -----------LRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVN 199 (334)
T ss_pred -----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHh
Confidence 23447788999999999988877766777777777776677777777777777666654
|
|
| >KOG1822|consensus | Back alignment and domain information |
|---|
Probab=93.13 E-value=62 Score=46.89 Aligned_cols=192 Identities=14% Similarity=0.176 Sum_probs=127.1
Q ss_pred HHHHHhhhcCC-CCHHHHHHHHHHHHHHHHhhchhHH-HHHHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHhchhhHH
Q psy14676 80 ILTALLPQLSS-PRQAVRKRTIVALSHLVMSCNLQLY-TKLIDFLLEGLTT--NKSTSTNRTYIQCFAAICRQAGHRFAE 155 (1827)
Q Consensus 80 il~~ll~~L~~-~~~~VRk~Ai~aL~~l~~~~~~~~~-~~l~~~ll~~L~~--~~~~~~r~~ai~~l~~la~~~~~~~~p 155 (1827)
....+...++. .++.+|+-...|+..+... .+.+. ...+...-..+.+ ...+..+..+.+|++++.++.|...+.
T Consensus 52 ~~~~l~s~~~~~~~~p~rkL~s~~i~rl~~~-gd~f~~~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~~ 130 (2067)
T KOG1822|consen 52 LEQQLISRLTNGAGPPTRKLISVAIARLISN-GDSFSLYSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMIGR 130 (2067)
T ss_pred HHHHHHHHHccCCCchhHHHHHHHHHHHHhc-cchhhHHHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhhcc
Confidence 44445555554 5778999999999988877 33321 2222222233332 234567788999999999999988887
Q ss_pred hHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccc--cchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCC
Q psy14676 156 HIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEIT--PHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGM 233 (1827)
Q Consensus 156 ~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~--p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~ 233 (1827)
-+.+.+.++.++.+...+-.|......+......|+.--. .+...+.......+
T Consensus 131 ~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~l------------------------ 186 (2067)
T KOG1822|consen 131 GLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSL------------------------ 186 (2067)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhh------------------------
Confidence 7888999999988776666676666667777777763211 11122222111111
Q ss_pred CCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCch-hhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHH
Q psy14676 234 DTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLI-GDMYRLVSPPLIARFKEREENVKSDIFHAYMAL 312 (1827)
Q Consensus 234 d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l-~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~l 312 (1827)
-|.|..||-++++|+.++..-.+..+ ..-++....+..+.+...+|.+|.+...+++++
T Consensus 187 --------------------ld~s~~v~iaa~rc~~a~s~~~~~~~~~Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~L 246 (2067)
T KOG1822|consen 187 --------------------LDRSFNVKIAAARCLKAFSNLGGPGLGTSELETLASYCFKGIEISNSEVRCAVAEFLGSL 246 (2067)
T ss_pred --------------------hhhhHHHHHHhHHHHHHHHhhcCccccchhhhhhcceeeeeeccchHHHHHHHHHHHHHH
Confidence 12355799999999999887655443 334555566666777889999999999999999
Q ss_pred Hhhh
Q psy14676 313 LKGT 316 (1827)
Q Consensus 313 l~~~ 316 (1827)
+...
T Consensus 247 la~~ 250 (2067)
T KOG1822|consen 247 LALG 250 (2067)
T ss_pred Hhcc
Confidence 8543
|
|
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.67 Score=46.80 Aligned_cols=80 Identities=15% Similarity=0.278 Sum_probs=65.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCC-CccccchHHHHHHHH
Q psy14676 128 TNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCP-KEITPHIQSITELCL 206 (1827)
Q Consensus 128 ~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p-~e~~p~l~~ii~~ll 206 (1827)
...+...|+.++.+++.+.+..++.+..+.++|+-.+...+. .+++|+.|+.++..|+...+ +++.|+++.++-.++
T Consensus 25 ~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~--~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~ 102 (107)
T PF08064_consen 25 GKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALE--IPELREEALSCWNCFIKTLDEEDLGPLLDQIFAILL 102 (107)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhC--ChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 345667899999999999998888888888888877777664 45999999999999999886 478888888888887
Q ss_pred HHh
Q psy14676 207 TYI 209 (1827)
Q Consensus 207 ~~l 209 (1827)
++.
T Consensus 103 ~~~ 105 (107)
T PF08064_consen 103 PLW 105 (107)
T ss_pred Hhc
Confidence 654
|
; GO: 0004674 protein serine/threonine kinase activity |
| >COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=92.98 E-value=1.9 Score=49.55 Aligned_cols=80 Identities=21% Similarity=0.274 Sum_probs=61.9
Q ss_pred CcchhHHHHHHHHHHHHhh-----cCCC---HHHHHHHHHHHHHHHHHhhhh---hhh-hhhhhHHHHHHhhhhhhhHHH
Q psy14676 1126 DFAPFTSDIYQCTLVRLKA-----ADID---QEVKERAISCMGQIICNLGDY---LKS-ELPVCLPILLDRLRNEITRLT 1193 (1827)
Q Consensus 1126 ~~~~~l~~l~~~ll~~L~~-----~D~d---~eVre~Ai~alg~l~~~~g~~---l~~-~l~~lL~~Ll~~L~~e~tR~~ 1193 (1827)
...||+++++|.++..+-+ .+.| ..+|..|...++-+.++++.. +.| ...+++..++++-+.+.|...
T Consensus 270 FvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YG 349 (450)
T COG5095 270 FVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYG 349 (450)
T ss_pred eecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhh
Confidence 3469999999888765543 2333 239999999999999999864 445 456788888998889999999
Q ss_pred HHHHHHHHhcCC
Q psy14676 1194 TVKALTKIAASP 1205 (1827)
Q Consensus 1194 av~al~~ia~~~ 1205 (1827)
|++++..+....
T Consensus 350 alkgls~l~ke~ 361 (450)
T COG5095 350 ALKGLSILSKEV 361 (450)
T ss_pred hhhhhhhhchhh
Confidence 999999887654
|
|
| >KOG0567|consensus | Back alignment and domain information |
|---|
Probab=92.77 E-value=4.2 Score=46.71 Aligned_cols=204 Identities=18% Similarity=0.193 Sum_probs=122.2
Q ss_pred HHHHHHHHHHhhhcC-CCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHH--HhhC
Q psy14676 852 LYTKLIDFLLEGLTT-NKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAF--VQRC 928 (1827)
Q Consensus 852 ~~~~l~~~l~~~l~~-~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~--v~~~ 928 (1827)
.+..-++.++..+.. +..|.||-.+-.++|++. .+.+++++-++.+|.-.+||++|.-|+..+ ....
T Consensus 64 ~~~~Av~~l~~vl~desq~pmvRhEAaealga~~----------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~ 133 (289)
T KOG0567|consen 64 QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG----------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDII 133 (289)
T ss_pred ccchhhHHHHHHhcccccchHHHHHHHHHHHhhc----------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence 344445556665544 556888888888888774 356778888888777788999988887653 3333
Q ss_pred CC--cccccccccccc--CCcchhhhhHHHHHhhcCCChHhHhhh-hhcccchhhHhhhhcccccchhhhhhhhHHHHHH
Q psy14676 929 PK--EITPHIQSIGRH--TDLTSVADLKQVILNAFTPTSEEVKSA-ASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWA 1003 (1827)
Q Consensus 929 ~~--~i~p~l~~i~~~--~~~s~~~~L~~~l~~~~~~~~e~~r~~-~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~ 1003 (1827)
++ ...||.. .-+- .+.+++.++...++..-.+.-+..+.. ..+..|+. .-+.
T Consensus 134 ~~~~~~~p~~S-vdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E----------------------eaI~ 190 (289)
T KOG0567|consen 134 DKIANSSPYIS-VDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE----------------------EAIN 190 (289)
T ss_pred ccccccCcccc-CCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH----------------------HHHH
Confidence 33 3555544 2111 234556666554433221111111110 11112221 1133
Q ss_pred HHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHhcc--CChhhHHHHHHHHHHHHHhccccccccccchhhhhh
Q psy14676 1004 QLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKS--NSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYS 1081 (1827)
Q Consensus 1004 ~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s--~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~ 1081 (1827)
.+...+.+++.-.|--++-|+|+|-. ..-+|.+.+.|.. ..+.+|..++.+||.++..
T Consensus 191 al~~~l~~~SalfrhEvAfVfGQl~s---~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e----------------- 250 (289)
T KOG0567|consen 191 ALIDGLADDSALFRHEVAFVFGQLQS---PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE----------------- 250 (289)
T ss_pred HHHHhcccchHHHHHHHHHHHhhccc---hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-----------------
Confidence 44444555666666677888888754 4568999999843 4688999999999976543
Q ss_pred hhhhhhHHHHHhhcCCchhhHHHHHHHHHH
Q psy14676 1082 FYYFLLSPVIASVGDNFYKITAEALLVLQQ 1111 (1827)
Q Consensus 1082 ~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~ 1111 (1827)
.-++.+.+-++|+.+.|+..+--++..
T Consensus 251 ---~~~~vL~e~~~D~~~vv~esc~valdm 277 (289)
T KOG0567|consen 251 ---DCVEVLKEYLGDEERVVRESCEVALDM 277 (289)
T ss_pred ---HHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 355666667888888777766555444
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.70 E-value=26 Score=44.35 Aligned_cols=212 Identities=15% Similarity=0.176 Sum_probs=127.6
Q ss_pred hhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCC
Q psy14676 1212 PILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPN 1291 (1827)
Q Consensus 1212 p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~ 1291 (1827)
.++...+..+.+++...+..+|.-++..|..+..+.+. ++...++.++.-|..=+-|....||..|+-+|+..-.....
T Consensus 87 ~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 87 ELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC
Confidence 34555555666666666788999999999988887653 66678888888888888888999999988888775431110
Q ss_pred ccchhhHHhhhhhcccccCCCchhhHHHHHHHhc-CCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhcC--chhhHH
Q psy14676 1292 ALVEPAAASILPQIGRHTDLTSVADLKQVILNAF-TPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIENQ--PKRQYL 1368 (1827)
Q Consensus 1292 ~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~-~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~~--~~~q~~ 1368 (1827)
.-..+..++...+ .|+|.|||.+|... +.+.| .-+|.|++-..+- ..++-.
T Consensus 166 ---------------------een~~~n~l~~~vqnDPS~EVRr~alln---i~vdn--sT~p~IlERarDv~~anRr~v 219 (885)
T COG5218 166 ---------------------EENRIVNLLKDIVQNDPSDEVRRLALLN---ISVDN--STYPCILERARDVSGANRRMV 219 (885)
T ss_pred ---------------------hHHHHHHHHHHHHhcCcHHHHHHHHHHH---eeeCC--CcchhHHHHhhhhhHHHHHHH
Confidence 0012344444444 57899999987553 33322 4679999987762 223333
Q ss_pred HHHHHHHHHhhccccccchhhhhchHHHHHHHHhhh-hcCCchhHHHHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHH
Q psy14676 1369 LLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLH-CECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMR 1447 (1827)
Q Consensus 1369 ~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~-~~~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R 1447 (1827)
.-+.|.-+-.... ..+.+.+- ++++ +.+-+..+|++++..+..= ...|.. ..+.+++..-+-.-|
T Consensus 220 Y~r~Lp~iGd~~~------lsi~kri~-----l~ewgl~dRe~sv~~a~~d~ia~~-w~~~~d--~~lveLle~lDvSr~ 285 (885)
T COG5218 220 YERCLPRIGDLKS------LSIDKRIL-----LMEWGLLDREFSVKGALVDAIASA-WRIPED--LRLVELLEFLDVSRR 285 (885)
T ss_pred HHHHhhhhcchhh------ccccceeh-----hhhhcchhhhhhHHHHHHHHHHHH-hccccc--ccHHHHHHHHhhhhH
Confidence 3455544432111 12333321 3332 2344677888777665432 233332 133444443344556
Q ss_pred HHHHHHHHHHhhhcCCC
Q psy14676 1448 TTVLTAVKFTISDQMTS 1464 (1827)
Q Consensus 1448 ~t~l~Alk~~~~~~~~~ 1464 (1827)
..++.||+.++...++.
T Consensus 286 sv~v~aik~~F~~R~D~ 302 (885)
T COG5218 286 SVLVAAIKGVFEKRPDV 302 (885)
T ss_pred HHHHHHHHHHHhhcccc
Confidence 67888888888765443
|
|
| >KOG1949|consensus | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.74 Score=58.35 Aligned_cols=149 Identities=17% Similarity=0.225 Sum_probs=111.3
Q ss_pred HHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhh
Q psy14676 1088 SPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLG 1167 (1827)
Q Consensus 1088 p~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g 1167 (1827)
|.+..+++-+++.||+.|+..+-.+.....| +. ...+....++.=+..+.+-|. |.-+.||..|+..+..+...+=
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dp-d~-~~e~mD~i~~kQf~~l~~LL~--d~~p~VRS~a~~gv~k~~s~fW 252 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDP-DL-HAEEMDSIIQKQFEELYSLLE--DPYPMVRSTAILGVCKITSKFW 252 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCC-Cc-cHHHHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHH
Confidence 4556788889999999998887776654443 11 124455666766777777777 8899999999999888887765
Q ss_pred hhhhh-hhhhhHHHHHHhhhhhh---hHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHH
Q psy14676 1168 DYLKS-ELPVCLPILLDRLRNEI---TRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTL 1243 (1827)
Q Consensus 1168 ~~l~~-~l~~lL~~Ll~~L~~e~---tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L 1243 (1827)
..+.+ -+..++..+.+.+..++ .|.++.+++..++..+.. .+.+..++|.+.-.+.++...+|.+.++-|-.+
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s---h~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS---HPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc---hhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 55543 45566666766665554 399999999999986542 367778889888888899999999999888664
|
|
| >KOG2933|consensus | Back alignment and domain information |
|---|
Probab=92.58 E-value=1.4 Score=51.44 Aligned_cols=179 Identities=11% Similarity=0.137 Sum_probs=125.8
Q ss_pred chhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCC
Q psy14676 256 MSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDS 335 (1827)
Q Consensus 256 ~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~ 335 (1827)
..|-..--+..-+..++...++.+.+.+..+...+++-++.....|=.+|+.+++.+.....
T Consensus 100 ~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln------------------ 161 (334)
T KOG2933|consen 100 DDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLN------------------ 161 (334)
T ss_pred HHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH------------------
Confidence 34888778888888899888898999999999999999998888999999999998885421
Q ss_pred hHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCC
Q psy14676 336 PLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDT 415 (1827)
Q Consensus 336 ~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~ 415 (1827)
..+...+...+..++..-.+.+.=||..+-..|..++..... +.+++.+...+++
T Consensus 162 --~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~----------------- 216 (334)
T KOG2933|consen 162 --NSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQH----------------- 216 (334)
T ss_pred --HHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhh-----------------
Confidence 223334444444444433344555899999888888865532 2345555555543
Q ss_pred cccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh--hhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHH
Q psy14676 416 EEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR--DLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALL 493 (1827)
Q Consensus 416 e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~--~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~ 493 (1827)
.+-|+|..+..|.+.+....| ....++...+++.+-.-..|.-+.+|.+|--...++.
T Consensus 217 --------------------~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~~~ 276 (334)
T KOG2933|consen 217 --------------------SNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLSRAAQEQGSDKLPELREAARFVRLELK 276 (334)
T ss_pred --------------------hchhhhhhhhccccccceeccccchhhHhHHHHHHHHHhhhcccccccccchhHHHHhHH
Confidence 134688888888888888777 4455666677777777777777777766665555554
Q ss_pred hhcc
Q psy14676 494 KGTR 497 (1827)
Q Consensus 494 ~~~g 497 (1827)
+++.
T Consensus 277 ~v~~ 280 (334)
T KOG2933|consen 277 EVLK 280 (334)
T ss_pred HHHH
Confidence 4443
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.40 E-value=6.2 Score=49.53 Aligned_cols=102 Identities=18% Similarity=0.164 Sum_probs=70.2
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHH
Q psy14676 1433 PRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQ 1512 (1827)
Q Consensus 1433 P~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr 1512 (1827)
-++..-+.+++-.+|.-+++-+..+. +.-..+|+.+. +.++.-+.+-+-|.++.||
T Consensus 94 ~h~lRg~eskdk~VR~r~lqila~~~-d~v~eIDe~l~-----------------------N~L~ekl~~R~~DRE~~VR 149 (885)
T COG5218 94 YHLLRGTESKDKKVRKRSLQILALLS-DVVREIDEVLA-----------------------NGLLEKLSERLFDREKAVR 149 (885)
T ss_pred HHHHhcccCcchhHHHHHHHHHHHHH-HhcchHHHHHH-----------------------HHHHHHHHHHHhcchHHHH
Confidence 44455556788889999988887665 33455666653 4455666666779999999
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHh
Q psy14676 1513 NLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYC 1566 (1827)
Q Consensus 1513 ~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~ 1566 (1827)
..|.++|.++.. +..++-..+++.++..+++|++. +|||.|+..+.
T Consensus 150 ~eAv~~L~~~Qe-~~~neen~~~n~l~~~vqnDPS~-------EVRr~allni~ 195 (885)
T COG5218 150 REAVKVLCYYQE-MELNEENRIVNLLKDIVQNDPSD-------EVRRLALLNIS 195 (885)
T ss_pred HHHHHHHHHHHh-ccCChHHHHHHHHHHHHhcCcHH-------HHHHHHHHHee
Confidence 999999998873 22233334555555556666554 99999988663
|
|
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=92.03 E-value=1.8 Score=51.91 Aligned_cols=140 Identities=14% Similarity=0.113 Sum_probs=100.6
Q ss_pred CCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhH---HH-----HHH-HHHHHhcc-------CCCCHHH
Q psy14676 71 ALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQL---YT-----KLI-DFLLEGLT-------TNKSTST 134 (1827)
Q Consensus 71 ~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~---~~-----~l~-~~ll~~L~-------~~~~~~~ 134 (1827)
+.+..+.+-+++.++..++|.++.+|.+++.++.++...++... +. +++ +.+...|. .+++..+
T Consensus 111 ~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~L 190 (282)
T PF10521_consen 111 PWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLEL 190 (282)
T ss_pred chHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHH
Confidence 34555677899999999999999999999999999999887665 32 222 33333332 1344567
Q ss_pred HHHHHHHHHHHHHHh-----chhhHHhHHHHHHHHHhhcc----cCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHH
Q psy14676 135 NRTYIQCFAAICRQA-----GHRFAEHIERVMPLILKYSR----EEDDELREFCLQACEAFVQRCPKEITPHIQSITELC 205 (1827)
Q Consensus 135 r~~ai~~l~~la~~~-----~~~~~p~l~~i~p~l~~~~~----~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~l 205 (1827)
-+.+..|+-.++... ..+...+...+-..+++.+. .+..+++...++.+..++...+-....|+..+++.+
T Consensus 191 l~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l 270 (282)
T PF10521_consen 191 LQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVL 270 (282)
T ss_pred HHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 788889999998764 22333233333343444332 235889999999999999999999999999999999
Q ss_pred HHHhc
Q psy14676 206 LTYIT 210 (1827)
Q Consensus 206 l~~l~ 210 (1827)
.++|.
T Consensus 271 ~~~l~ 275 (282)
T PF10521_consen 271 SQILE 275 (282)
T ss_pred HHHhc
Confidence 99774
|
|
| >smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.92 Score=45.60 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHHHHhcCCC
Q psy14676 1129 PFTSDIYQCTLVRLKAAD--IDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIAASPL 1206 (1827)
Q Consensus 1129 ~~l~~l~~~ll~~L~~~D--~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~av~al~~ia~~~~ 1206 (1827)
+++--++..+-..+.+.+ .+..-|.+++.+++.+++..|..+...+|++.-.|...+..++-|..|.+++..+.....
T Consensus 7 ~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~ 86 (107)
T smart00802 7 DHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLK 86 (107)
T ss_pred HHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCC
Confidence 344445555545554333 244669999999999999999999899999999999999888889999999999887655
Q ss_pred ccccchhhhhhHhhh
Q psy14676 1207 RIDLRPILTDGIPIL 1221 (1827)
Q Consensus 1207 ~~dl~p~~~~~l~~L 1221 (1827)
..++.|.+...+..+
T Consensus 87 ~~~l~~ll~~~~~~i 101 (107)
T smart00802 87 EEELGPLLDQIFAAI 101 (107)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555444443
|
Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules. |
| >cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
Probab=91.92 E-value=1.9 Score=53.12 Aligned_cols=131 Identities=17% Similarity=0.234 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh---H--HHHHHHHHHHhc--
Q psy14676 1131 TSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT---R--LTTVKALTKIAA-- 1203 (1827)
Q Consensus 1131 l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t---R--~~av~al~~ia~-- 1203 (1827)
+...|..+...+. +.+...|..|+..+.. .+.+..++|.|+..+.+..+ . ...+..+-.++.
T Consensus 176 lq~yf~~It~a~~--~~~~~~r~~aL~sL~t---------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~AL 244 (343)
T cd08050 176 LQLYFEEITEALV--GSNEEKRREALQSLRT---------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRAL 244 (343)
T ss_pred HHHHHHHHHHHHh--CCCHHHHHHHHHHhcc---------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHH
Confidence 3444444555554 4566778888877654 35677888888877765543 1 333333333333
Q ss_pred -CCCccccchhhhhhHhhhhhhh----------cchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCCh
Q psy14676 1204 -SPLRIDLRPILTDGIPILGSFL----------RKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDL 1272 (1827)
Q Consensus 1204 -~~~~~dl~p~~~~~l~~L~~~L----------rk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~ 1272 (1827)
......++||++.++|.+.+.+ -+++|.+|.-|...|..+++.++...+ .+...++..+...+.|...
T Consensus 245 l~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~ 323 (343)
T cd08050 245 LDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYN-TLQPRITRTLLKALLDPKK 323 (343)
T ss_pred hcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCC
Confidence 2235778899999999877654 246799999999999999999887643 3455666666666665544
Q ss_pred h
Q psy14676 1273 H 1273 (1827)
Q Consensus 1273 ~ 1273 (1827)
.
T Consensus 324 ~ 324 (343)
T cd08050 324 P 324 (343)
T ss_pred C
Confidence 3
|
The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as |
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.84 Score=46.08 Aligned_cols=95 Identities=20% Similarity=0.151 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHHHhh--cCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHHHHhcCCC
Q psy14676 1129 PFTSDIYQCTLVRLKA--ADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIAASPL 1206 (1827)
Q Consensus 1129 ~~l~~l~~~ll~~L~~--~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~av~al~~ia~~~~ 1206 (1827)
+++--++..+-..+.+ ...+..-|.+++.+++.+++..|..+....|++.-.|...++.+.-|..|++++..+.....
T Consensus 7 ~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~ 86 (107)
T PF08064_consen 7 PHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTLD 86 (107)
T ss_pred HHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCC
Confidence 3444445555455542 23567789999999999999888888888999888888888888889999999999988665
Q ss_pred ccccchhhhhhHhhhhh
Q psy14676 1207 RIDLRPILTDGIPILGS 1223 (1827)
Q Consensus 1207 ~~dl~p~~~~~l~~L~~ 1223 (1827)
..++.|.++..+..+..
T Consensus 87 ~~~l~~ll~~~~~~l~~ 103 (107)
T PF08064_consen 87 EEDLGPLLDQIFAILLP 103 (107)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666666655554433
|
; GO: 0004674 protein serine/threonine kinase activity |
| >PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar | Back alignment and domain information |
|---|
Probab=91.82 E-value=2.1 Score=58.89 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhC
Q psy14676 157 IERVMPLILKYSREEDDELREFCLQACEAFVQRC 190 (1827)
Q Consensus 157 l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~ 190 (1827)
+..++.+++.++..+..-+|..+.+.|+.|+..+
T Consensus 587 ~~vlveiLLslls~~s~llR~~~~~vf~~~~~~~ 620 (784)
T PF04931_consen 587 SEVLVEILLSLLSQPSALLRKVSEQVFEAFCPHL 620 (784)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHhhc
Confidence 5677888888888888889999999888887543
|
The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent |
| >KOG2149|consensus | Back alignment and domain information |
|---|
Probab=91.68 E-value=1.6 Score=52.92 Aligned_cols=129 Identities=20% Similarity=0.223 Sum_probs=98.3
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHHHHHHH-hchhhHH
Q psy14676 80 ILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGL---TTNKSTSTNRTYIQCFAAICRQ-AGHRFAE 155 (1827)
Q Consensus 80 il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L---~~~~~~~~r~~ai~~l~~la~~-~~~~~~p 155 (1827)
-+.-+++.+.+.++.||+-|...+-.+....+.. +...+-.+++.+ -.+.+..+|...++.+-.+... ++...+|
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~-l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAE-LQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHH-HHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 3555778899999999999999999998884443 332333344433 2245678999999999886654 4555799
Q ss_pred hHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHh
Q psy14676 156 HIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYI 209 (1827)
Q Consensus 156 ~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l 209 (1827)
++.-++|.+..++..-.+++|+-++-.+..++.+||..+..+...+++-...++
T Consensus 138 ~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i 191 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVI 191 (393)
T ss_pred hHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 999999999999998899999999999999999999887766655555554443
|
|
| >KOG2022|consensus | Back alignment and domain information |
|---|
Probab=91.67 E-value=61 Score=43.42 Aligned_cols=153 Identities=11% Similarity=0.188 Sum_probs=117.8
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhc-----CCCCHHHHHHHHHHHHHHHHhhchh--HHHHHHHHHH
Q psy14676 51 DVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQL-----SSPRQAVRKRTIVALSHLVMSCNLQ--LYTKLIDFLL 123 (1827)
Q Consensus 51 ~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L-----~~~~~~VRk~Ai~aL~~l~~~~~~~--~~~~l~~~ll 123 (1827)
+....+.++..+-.+++++|...... ++.+++.. +-+++..-+.+...+|.++..+.+. .++..++.++
T Consensus 480 s~~~tEaci~~~~sva~~~~~t~~~~----i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~ 555 (982)
T KOG2022|consen 480 SLNRTEACIFQFQSVAEYLGETESTW----IPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLF 555 (982)
T ss_pred HHHHHHHHHHHHHHHHhhcCcchhHH----HHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHH
Confidence 35667888999999999998754433 44444443 3357888889999999999988754 5677889999
Q ss_pred HhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhccc--CchHHHHHHHHHHHHHHHhC-CCccccchHH
Q psy14676 124 EGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSRE--EDDELREFCLQACEAFVQRC-PKEITPHIQS 200 (1827)
Q Consensus 124 ~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~--~~delRe~al~ale~~~~~~-p~e~~p~l~~ 200 (1827)
++|.. ...-..++..+..+|+.++..+.||.+.++.+.-..+.. -.+..|.....+++..+.+. |+++..|+..
T Consensus 556 ~~Lh~---sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~ 632 (982)
T KOG2022|consen 556 QGLHN---SKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMK 632 (982)
T ss_pred HHhcC---chHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHH
Confidence 99853 234456677799999999999999999999888777643 24556777888898887765 7888889999
Q ss_pred HHHHHHHHhc
Q psy14676 201 ITELCLTYIT 210 (1827)
Q Consensus 201 ii~~ll~~l~ 210 (1827)
++..++.-+.
T Consensus 633 lin~il~qle 642 (982)
T KOG2022|consen 633 LINPILSQLE 642 (982)
T ss_pred HHHHHHHHHH
Confidence 9999987653
|
|
| >smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
Probab=91.64 E-value=1.8 Score=43.54 Aligned_cols=77 Identities=13% Similarity=0.266 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCC-ccccchHHHHHHHHHHh
Q psy14676 131 STSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPK-EITPHIQSITELCLTYI 209 (1827)
Q Consensus 131 ~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~-e~~p~l~~ii~~ll~~l 209 (1827)
+...|+.++.+++.+.+..+..+..+.++|+-.+...+. .+|+|+.|+.++..|+...++ ++.|.++.++-.++++.
T Consensus 28 ~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 28 PYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 456799999999999998888888888888887777764 678999999999999998864 67777777777777653
|
Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules. |
| >PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=91.21 E-value=14 Score=45.70 Aligned_cols=102 Identities=22% Similarity=0.273 Sum_probs=69.5
Q ss_pred HHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHH
Q psy14676 16 LKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAV 95 (1827)
Q Consensus 16 Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~V 95 (1827)
.-.+...+|. . + +...++..|...+.++.+.......+.+|+.-+..++..+ -..+...+...|++..+.|
T Consensus 7 ~~~~L~~l~~-~-~----~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~---~~~~~~~~~kGl~~kk~~v 77 (339)
T PF12074_consen 7 HASMLSSLPS-S-S----LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL---PKKVVDAFKKGLKDKKPPV 77 (339)
T ss_pred HHHHHHhCCC-c-c----hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC---CHHHHHHHHHHhcCCCCcH
Confidence 3456677777 3 2 4455555555555666677777777888877777773333 3578899999999999889
Q ss_pred HHHHHHHHHHHHH----hhchhHHHHHHHHHHHhc
Q psy14676 96 RKRTIVALSHLVM----SCNLQLYTKLIDFLLEGL 126 (1827)
Q Consensus 96 Rk~Ai~aL~~l~~----~~~~~~~~~l~~~ll~~L 126 (1827)
|+.-+.+++.... .-.......+++.+++.+
T Consensus 78 R~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 112 (339)
T PF12074_consen 78 RRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSL 112 (339)
T ss_pred HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHH
Confidence 9999999999876 222334455566666655
|
This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM. |
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=91.15 E-value=6.3 Score=47.73 Aligned_cols=166 Identities=17% Similarity=0.186 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcC
Q psy14676 11 ISSIGLKTVISELPLGSNALAANVCRRITGKLS-TAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLS 89 (1827)
Q Consensus 11 i~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll-~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~ 89 (1827)
|...-|+.+-..+.++. ....++..|+ .++.+. ++.+|+.|+.+||-.+---. ....+.+..++..++
T Consensus 6 i~~~lL~~~~~~~~~~~------~l~~ll~~lI~P~v~~~-~~~vR~~al~cLGl~~Lld~----~~a~~~l~l~~~~~~ 74 (298)
T PF12719_consen 6 ITQSLLENVSSSLSPNI------SLESLLDSLILPAVQSS-DPAVRELALKCLGLCCLLDK----ELAKEHLPLFLQALQ 74 (298)
T ss_pred HHHHHHHhccccCCCcc------hHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhCh----HHHHHHHHHHHHHHH
Confidence 34445555555554433 1334555444 677654 78999999999997754322 133456777778887
Q ss_pred CCCHHHHHHHHHHHHHHHHhhchhHHH------------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhh-HHh
Q psy14676 90 SPRQAVRKRTIVALSHLVMSCNLQLYT------------KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRF-AEH 156 (1827)
Q Consensus 90 ~~~~~VRk~Ai~aL~~l~~~~~~~~~~------------~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~-~p~ 156 (1827)
..+..||..|+.++..+....+...+. .+.+-+...|.+. ++.++..+++.++.+.-+---.- ..-
T Consensus 75 ~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~~~~v 153 (298)
T PF12719_consen 75 KDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISDPPKV 153 (298)
T ss_pred hCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 678999999999999998877654432 2333444444443 67899999999998764322111 122
Q ss_pred HHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Q psy14676 157 IERVMPLILKYSREEDDELREFCLQACEAFVQ 188 (1827)
Q Consensus 157 l~~i~p~l~~~~~~~~delRe~al~ale~~~~ 188 (1827)
+..++-..+.-...++..+|+.--.+|..++.
T Consensus 154 L~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~ 185 (298)
T PF12719_consen 154 LSRLLLLYFNPSTEDNQRLRQCLSVFFPVYAS 185 (298)
T ss_pred HHHHHHHHcCcccCCcHHHHHHHHHHHHHHHc
Confidence 34444333433345567777443334444444
|
|
| >KOG2081|consensus | Back alignment and domain information |
|---|
Probab=90.94 E-value=57 Score=41.71 Aligned_cols=236 Identities=12% Similarity=0.159 Sum_probs=134.0
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhH----HHHHH---HHHHHhc----cCCCCHHHHHHHHHHHHHHHH
Q psy14676 79 VILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQL----YTKLI---DFLLEGL----TTNKSTSTNRTYIQCFAAICR 147 (1827)
Q Consensus 79 ~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~----~~~l~---~~ll~~L----~~~~~~~~r~~ai~~l~~la~ 147 (1827)
.+..+.+..+++ ...-..|+.++..+.....+.. +...+ ..++... ....+.+.++.++..+..+++
T Consensus 199 pLi~l~F~sl~~--~~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~e 276 (559)
T KOG2081|consen 199 PLITLAFRSLSD--DELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGE 276 (559)
T ss_pred HHHHHHHHHccc--chhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHH
Confidence 455666666763 3345566666666655443211 21111 1111111 123556778888888888887
Q ss_pred HhchhhHH---hHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhC-----C------CccccchHHHHHHHHHHhccCC
Q psy14676 148 QAGHRFAE---HIERVMPLILKYSREEDDELREFCLQACEAFVQRC-----P------KEITPHIQSITELCLTYITYDP 213 (1827)
Q Consensus 148 ~~~~~~~p---~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~-----p------~e~~p~l~~ii~~ll~~l~~dp 213 (1827)
+-...+.. +.-.++..++-.....+.|+-+.. |.+|.+.- + .-++||...++..+.+..+|.|
T Consensus 277 af~~~i~~np~~~l~~vellLl~~~h~~~evie~S---F~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~ 353 (559)
T KOG2081|consen 277 AFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEAS---FNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPP 353 (559)
T ss_pred HHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhh---HHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCC
Confidence 64322221 122234344444445566666555 44554421 1 1378999999999999999977
Q ss_pred CCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhh
Q psy14676 214 NYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIAR 293 (1827)
Q Consensus 214 n~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~ 293 (1827)
|-.+ +-+ +++ .--..|......+..++.-.|. ...++++.-.+.+
T Consensus 354 -~~~~--------------l~E----------e~~-------~f~~fR~~v~dvl~Dv~~iigs--~e~lk~~~~~l~e- 398 (559)
T KOG2081|consen 354 -DQFD--------------LPE----------EES-------EFFEFRLKVGDVLKDVAFIIGS--DECLKQMYIRLKE- 398 (559)
T ss_pred -cccc--------------Ccc----------chh-------HHHHHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHcc-
Confidence 3100 000 001 1124677777777776655553 1223332222222
Q ss_pred cCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHH
Q psy14676 294 FKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLREL 373 (1827)
Q Consensus 294 l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L 373 (1827)
+...|+.-.+++-.+.++++...... ...+|.|++.+.+. +.-..+|+++..+++.+
T Consensus 399 -~~~~We~~EAaLF~l~~~~~~~~~~e--------------------~~i~pevl~~i~nl--p~Q~~~~~ts~ll~g~~ 455 (559)
T KOG2081|consen 399 -NNASWEEVEAALFILRAVAKNVSPEE--------------------NTIMPEVLKLICNL--PEQAPLRYTSILLLGEY 455 (559)
T ss_pred -CCCchHHHHHHHHHHHHHhccCCccc--------------------cchHHHHHHHHhCC--ccchhHHHHHHHHHHHH
Confidence 45679999999988888875432110 23688888888873 34445999999999998
Q ss_pred HHhC
Q psy14676 374 VQTL 377 (1827)
Q Consensus 374 ~~vl 377 (1827)
.+.+
T Consensus 456 ~ew~ 459 (559)
T KOG2081|consen 456 SEWV 459 (559)
T ss_pred HHHH
Confidence 8876
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=90.84 E-value=55 Score=41.39 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=50.4
Q ss_pred HHHHHhhccCCCcchHHHHHhhh-cCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHH
Q psy14676 1418 ECLGKLTLIDPSNLLPRLQESLK-SNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKV 1496 (1827)
Q Consensus 1418 ecLGkL~~~~p~~~lP~L~~~l~-~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l 1496 (1827)
|+.+|+-.-+ -.++-.|.+.+. +.++.+=+.+++-|..++.+-|..-+-. +.+ ..
T Consensus 342 EN~~kf~~~~-~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~------~~l-----------------g~ 397 (429)
T cd00256 342 ENADRLNEKN-YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVV------EQL-----------------GG 397 (429)
T ss_pred HHHHHHHhcc-hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHH------HHc-----------------Cc
Confidence 4445554322 345566666763 4566666666777777766543221100 000 12
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhhhhh
Q psy14676 1497 VKMLLRLLEDKNGEVQNLAVKCLGPLV 1523 (1827)
Q Consensus 1497 ~~~ll~~l~D~~~~Vr~~a~~~Lg~L~ 1523 (1827)
-..++.+|+++|++||..|..|+++|.
T Consensus 398 K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 398 KQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 256788999999999999999999985
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=90.81 E-value=13 Score=49.61 Aligned_cols=125 Identities=14% Similarity=0.164 Sum_probs=67.4
Q ss_pred HHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhh-hHHHHHHhhhcCchhhHHHHHHHHHHHhhccccccchhhhhchHH
Q psy14676 1317 LKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQ-YVPFVLKEIENQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVP 1395 (1827)
Q Consensus 1317 l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~-~LP~Il~~i~~~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~ 1395 (1827)
+...+-.+....+++.+..+..|||++|....-. +.|.+...-......|-.+++||+-+.... +... .+
T Consensus 447 l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~------p~~v---~~ 517 (574)
T smart00638 447 LHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRD------PRKV---QE 517 (574)
T ss_pred HHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhC------chHH---HH
Confidence 3344444445566777888889999988765433 444443111112345667788888654311 1111 23
Q ss_pred HHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCC-cchHHHHHhhh-cCCHHHHHHHHHHHH
Q psy14676 1396 AIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPS-NLLPRLQESLK-SNSALMRTTVLTAVK 1455 (1827)
Q Consensus 1396 ~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~-~~lP~L~~~l~-~~~~~~R~t~l~Alk 1455 (1827)
.+++.+... ..+.++|-+|.-.| ...+|. ..+-.+.+.+. .++.-++..+.+.||
T Consensus 518 ~l~~i~~n~--~e~~EvRiaA~~~l---m~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~ 574 (574)
T smart00638 518 VLLPIYLNR--AEPPEVRMAAVLVL---METKPSVALLQRIAELLNKEPNLQVASFVYSHIR 574 (574)
T ss_pred HHHHHHcCC--CCChHHHHHHHHHH---HhcCCCHHHHHHHHHHHhhcCcHHHHHHhHHhhC
Confidence 334444442 23344776654332 233454 56677777775 446777776666553
|
|
| >KOG2549|consensus | Back alignment and domain information |
|---|
Probab=90.75 E-value=4.3 Score=51.04 Aligned_cols=155 Identities=19% Similarity=0.262 Sum_probs=98.8
Q ss_pred hhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhcc-
Q psy14676 279 IGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLRE- 357 (1827)
Q Consensus 279 l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d- 357 (1827)
+.-||++|...+.. .++..|.+|+.++. . +. .+..++|.+...+.+
T Consensus 205 lQlYy~~It~a~~g----~~~~~r~eAL~sL~----------------T------Ds-------GL~~LlPyFv~fIae~ 251 (576)
T KOG2549|consen 205 LQLYYKEITEACTG----SDEPLRQEALQSLE----------------T------DS-------GLQQLLPYFVTFIAEG 251 (576)
T ss_pred HHHHHHHHHHHHhc----CCHHHHHHHHHhhc----------------c------Cc-------cHHHHHHHHHHHHhhh
Confidence 34588888777765 67888999998872 0 11 133344444444432
Q ss_pred CCHhHHHHHHHHHHHHHHhC------cc-cccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCC
Q psy14676 358 KSIRTRQDCLALLRELVQTL------PG-CLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEY 430 (1827)
Q Consensus 358 ~~~~vR~a~~~ll~~L~~vl------~~-~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~ 430 (1827)
-...+.+.++.+|..+..+. |. .+++|+-+|+|.++.|+=.+ .-+ +..
T Consensus 252 vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk-------~l~---~~p--------------- 306 (576)
T KOG2549|consen 252 VSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSK-------NLC---LRP--------------- 306 (576)
T ss_pred eeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhh-------hcc---CCc---------------
Confidence 22334466777776666554 22 55899999999999997221 111 111
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcch--hhhhHHHHHHHHHHHH
Q psy14676 431 SDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKER--EENVKSDIFHAYMALL 493 (1827)
Q Consensus 431 ~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~--~~~Vr~~a~~~l~~L~ 493 (1827)
+.|.+|.+|.-|+..+..+++.++......-..+...+.+.|.|. .+.-.-.++..|.+|.
T Consensus 307 --~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg 369 (576)
T KOG2549|consen 307 --ELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELG 369 (576)
T ss_pred --cccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhh
Confidence 134689999999999999999999666655566777777777666 3344445555555553
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=90.64 E-value=7.4 Score=52.14 Aligned_cols=226 Identities=20% Similarity=0.227 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCc
Q psy14676 1234 LSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTS 1313 (1827)
Q Consensus 1234 ~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~ 1313 (1827)
.-|+..|+.+++--+=+++-.+--+++|.+..||..+-.++++...=+-+++....|.+.. .++.|-|..
T Consensus 488 lRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~-----dLvKe~g~~----- 557 (1387)
T KOG1517|consen 488 LRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQA-----DLVKENGYK----- 557 (1387)
T ss_pred HHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHH-----HHHhccCce-----
Confidence 3345555555553222222222335888889999999999999888888888876665432 122222211
Q ss_pred hhhHHHHHHHhcC---CCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhcCchhhHHHHHHHHHHHhhccccccchhhh
Q psy14676 1314 VADLKQVILNAFT---PTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIENQPKRQYLLLHSLKEIISWQSTSTSGVAQL 1390 (1827)
Q Consensus 1314 ~~~l~~~~l~~~~---~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~~~~~q~~~l~aL~Eii~~~~~s~~g~~~L 1390 (1827)
-|++.+. .=++|-|.-||+-|..+..+. ...|..++.
T Consensus 558 ------YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf---------------~lGQ~acl~------------------- 597 (1387)
T KOG1517|consen 558 ------YFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF---------------KLGQKACLN------------------- 597 (1387)
T ss_pred ------eEEEEecCcCCCCHHHHHHHHHHHHHHHccc---------------chhHHHhcc-------------------
Confidence 1111111 124688888888766554321 001111110
Q ss_pred hchHHHHHHHHhhhhcCC-chhHHHHHHHHHHHhhccCCC--------cchHHHHHhhhcCCHHHHHHHHHHHHHHhhhc
Q psy14676 1391 QQFVPAIWAQLFLHCECQ-EEGTRNVVAECLGKLTLIDPS--------NLLPRLQESLKSNSALMRTTVLTAVKFTISDQ 1461 (1827)
Q Consensus 1391 ~~~~~~i~~~L~~~~~~~-~e~vR~~aAecLGkL~~~~p~--------~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~ 1461 (1827)
..++..-+.++.++ +.-.|.-++.|||+|=.-+++ .---.|...|+++.+.+|.+++.||..++...
T Consensus 598 ----~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 598 ----GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred ----ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 11122233333332 233577788888888764432 12245667788899999999999999999864
Q ss_pred CCCCChhHHHHHhhhhhhhhhhcccccChh--HHHHHHH----HHHHhhcCCchHHHHHHHHHhhhhh
Q psy14676 1462 MTSSDKDFRFMATNDLMSELQKDSIKLDDD--SERKVVK----MLLRLLEDKNGEVQNLAVKCLGPLV 1523 (1827)
Q Consensus 1462 ~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~--~~~~l~~----~ll~~l~D~~~~Vr~~a~~~Lg~L~ 1523 (1827)
.+..++.... .+ ..+.++.. ..++.++ .++.+++|..+-||...+.+|..++
T Consensus 674 ~d~fde~~~~--~~--------~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~ 731 (1387)
T KOG1517|consen 674 SDNFDEQTLV--VE--------EEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFV 731 (1387)
T ss_pred ccccchhhhh--hh--------hhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 3333332110 00 00111110 1123333 6677889999989988888877765
|
|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=90.60 E-value=8.5 Score=51.80 Aligned_cols=224 Identities=19% Similarity=0.202 Sum_probs=116.8
Q ss_pred hhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q psy14676 1085 FLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIIC 1164 (1827)
Q Consensus 1085 ~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~ 1164 (1827)
.++..+...+.++...+...++..+..|++.++.+. ...+..++..+ ...- -+..+...+-+.+.
T Consensus 325 ~l~~~l~~~~~~~~~~~~~~~~~~f~~Lv~~lr~l~-------~~~L~~l~~~~----~~~~----~~~~~r~~~lDal~ 389 (618)
T PF01347_consen 325 ELLKELADLLEEPEDPVSKETLSKFSRLVRLLRTLS-------YEDLEELYKQL----KSKS----KKEQARKIFLDALP 389 (618)
T ss_dssp HHHHHHHHHHHH-SSS--TTHHHHHHHHHHHHTTS--------HHHHHHHHHHH----TTS-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcccccchhHHHHHHHHHHHHhcCC-------HHHHHHHHHHH----Hhhc----cHHHHHHHHHHHHH
Confidence 344444444433334455566667888888877421 13344444433 2110 12223333334444
Q ss_pred HhhhhhhhhhhhhHHHHHHhhhhh-hhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhc----chhHHHHHHHHHH
Q psy14676 1165 NLGDYLKSELPVCLPILLDRLRNE-ITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLR----KNQRALKLSTLLL 1239 (1827)
Q Consensus 1165 ~~g~~l~~~l~~lL~~Ll~~L~~e-~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lr----k~~r~lR~~al~a 1239 (1827)
.+|- +..+..+.+.+.+. .+-..|++.+..+....... -.+.+..+..+++ ++++.+|.+++-+
T Consensus 390 ~aGT------~~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~P-----t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~ 458 (618)
T PF01347_consen 390 QAGT------NPAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRP-----TEELLKELFELAKSPKVKNSPYLRETALLS 458 (618)
T ss_dssp HH-S------HHHHHHHHHHHHTT-S-HHHHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHH
T ss_pred HcCC------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHhCccccCChhHHHHHHHH
Confidence 3442 44555666666553 33455666666665432111 1334444444443 3456799999999
Q ss_pred HHHHHHhCCCC-------------cChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcc
Q psy14676 1240 LDTLLVNYPSA-------------ISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIG 1306 (1827)
Q Consensus 1240 L~~L~~~~~~~-------------l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG 1306 (1827)
++.++..+... +...+++.+...+....+..|.+-+..++.+|+.+ |
T Consensus 459 ~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~--------------------g 518 (618)
T PF01347_consen 459 LGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL--------------------G 518 (618)
T ss_dssp HHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------T
T ss_pred HHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc--------------------C
Confidence 99998843211 23345555666666556666777777766666653 2
Q ss_pred cccCCCchhhHHHHHHHhcCCC---CHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhc
Q psy14676 1307 RHTDLTSVADLKQVILNAFTPT---SEEVKSAASYTLGSIAVGNLQQYVPFVLKEIEN 1361 (1827)
Q Consensus 1307 ~~~~~~~~~~l~~~~l~~~~~~---s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~ 1361 (1827)
.+..++.+...+.+. +..+|.+|.+||.+++........+.++....+
T Consensus 519 -------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n 569 (618)
T PF01347_consen 519 -------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMN 569 (618)
T ss_dssp --------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-
T ss_pred -------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcC
Confidence 134566666666655 788999999999987655544455555554444
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=89.85 E-value=7.4 Score=52.40 Aligned_cols=165 Identities=19% Similarity=0.166 Sum_probs=81.8
Q ss_pred CChhHHHHHHHHHHHHHHhC-CCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhh
Q psy14676 1270 SDLHIAQLTLTLLTSIAKIQ-PNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNL 1348 (1827)
Q Consensus 1270 ~D~~l~~~al~~L~~l~~~~-~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l 1348 (1827)
.+..++..++..++.++... ..... . ..+..-...+.-...+.+...+-.+....+++.+..+..|||++|...
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~~---~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~- 521 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSDS---A-EFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPE- 521 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT---------------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GG-
T ss_pred CChhHHHHHHHHHHHHhCceeecccc---c-ccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCch-
Confidence 56678888888888877631 11000 0 000000000000112345555555556778899999999999999643
Q ss_pred hhhHHHHHHhhhcC----chhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhh
Q psy14676 1349 QQYVPFVLKEIENQ----PKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLT 1424 (1827)
Q Consensus 1349 ~~~LP~Il~~i~~~----~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~ 1424 (1827)
.+|.++..+.+. ...|..+++||+-+.... +. ...+.+|+.+... ..+.++|-+|.-. |.
T Consensus 522 --~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~------~~---~v~~~l~~I~~n~--~e~~EvRiaA~~~---lm 585 (618)
T PF01347_consen 522 --SIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC------PE---KVREILLPIFMNT--TEDPEVRIAAYLI---LM 585 (618)
T ss_dssp --GHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-------HH---HHHHHHHHHHH-T--TS-HHHHHHHHHH---HH
T ss_pred --hhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC------cH---HHHHHHHHHhcCC--CCChhHHHHHHHH---HH
Confidence 444555544442 234555666665442210 11 1223344444442 2334477766433 33
Q ss_pred ccCCC-cchHHHHHhhh-cCCHHHHHHHHHHHH
Q psy14676 1425 LIDPS-NLLPRLQESLK-SNSALMRTTVLTAVK 1455 (1827)
Q Consensus 1425 ~~~p~-~~lP~L~~~l~-~~~~~~R~t~l~Alk 1455 (1827)
..+|. ..+-.+...+. .++..++..+.+.||
T Consensus 586 ~~~P~~~~l~~i~~~l~~E~~~QV~sfv~S~Lk 618 (618)
T PF01347_consen 586 RCNPSPSVLQRIAQSLWNEPSNQVASFVYSHLK 618 (618)
T ss_dssp HT---HHHHHHHHHHHTT-S-HHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHhhCchHHHHHHHHHhcC
Confidence 34454 56777777775 457888888877765
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >KOG2137|consensus | Back alignment and domain information |
|---|
Probab=89.66 E-value=3.4 Score=53.61 Aligned_cols=113 Identities=17% Similarity=0.180 Sum_probs=87.3
Q ss_pred CcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHh-hcCC
Q psy14676 1429 SNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRL-LEDK 1507 (1827)
Q Consensus 1429 ~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~-l~D~ 1507 (1827)
+.++|.|...+++.+..+-..+++.+-.+. +.+|-.. +.+.|+|.+..+ ++..
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~----e~iD~~~----------------------vk~~ilP~l~~l~~~tt 441 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVA----ESIDVPF----------------------VKQAILPRLKNLAFKTT 441 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHH----HhccHHH----------------------HHHHHHHHhhcchhccc
Confidence 356788888888888888888887777665 2333211 235677887764 6888
Q ss_pred chHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhhhhccCCCC
Q psy14676 1508 NGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRNSSSN 1575 (1827)
Q Consensus 1508 ~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~~~p~l 1575 (1827)
+..|+.|++-|+|.++++++.-.+.+.+.++++.+..+. +++...-+.....++-.+|+.
T Consensus 442 ~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~d--------p~iv~~~~~i~~~l~~~~~~g 501 (700)
T KOG2137|consen 442 NLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRD--------PAIVMGFLRIYEALALIIYSG 501 (700)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999888776433 377777788888888888884
|
|
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=89.65 E-value=35 Score=39.75 Aligned_cols=140 Identities=16% Similarity=0.164 Sum_probs=89.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHH
Q psy14676 38 ITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTK 117 (1827)
Q Consensus 38 L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~ 117 (1827)
|+|-|+-.+.+..+++.+...+..|..++.+-- ...+.++..+....+.+....+.-+...+..+...- +..| +
T Consensus 1 ll~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~-~r~f-~ 74 (234)
T PF12530_consen 1 LLPLLLYKLGKISDPELQLPLLEALPSLACHKN----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAN-DRHF-P 74 (234)
T ss_pred ChHHHHHHhcCCCChHHHHHHHHHHHHHhccCc----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC-chHH-H
Confidence 457777767777799999999999999987752 123456666666666666666666666666666543 3333 2
Q ss_pred HHHHHHHh----c----c-CCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhc-ccCchHHHHHHHHHHHHHH
Q psy14676 118 LIDFLLEG----L----T-TNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYS-REEDDELREFCLQACEAFV 187 (1827)
Q Consensus 118 l~~~ll~~----L----~-~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~-~~~~delRe~al~ale~~~ 187 (1827)
.+..++.. . . .+...+..-....++..+|...|+ |-.++++.+.+++ +++++..+..|++++..++
T Consensus 75 ~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 75 FLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 33433433 1 1 122233344444577888888887 5677888888888 6667777767766665555
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.42 E-value=5.9 Score=49.43 Aligned_cols=77 Identities=19% Similarity=0.202 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChH
Q psy14676 258 WKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPL 337 (1827)
Q Consensus 258 WkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1827)
.-||.+.|-+|+-.....+. +.....|-....+...-||..|+.+.+-++-|..
T Consensus 600 ~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n-------------------- 653 (926)
T COG5116 600 FHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCN-------------------- 653 (926)
T ss_pred hhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcC--------------------
Confidence 36888888888765554443 2223334444577888899999999988885532
Q ss_pred hhHHhhhHHHHHHHHHHhccCCH
Q psy14676 338 CLLSTQVPSLVKALQCQLREKSI 360 (1827)
Q Consensus 338 ~~l~~~lp~Iv~~l~~~L~d~~~ 360 (1827)
..|.+++..|.+.+.+...|++.
T Consensus 654 ~~Lnp~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 654 PELNPNVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred cccChhHHHHHHHHHHHHhhhhH
Confidence 33566777888888888777764
|
|
| >PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) | Back alignment and domain information |
|---|
Probab=89.29 E-value=19 Score=43.98 Aligned_cols=151 Identities=17% Similarity=0.261 Sum_probs=111.4
Q ss_pred hHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHH-HHHHHHHHHHHhCc
Q psy14676 300 NVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQ-DCLALLRELVQTLP 378 (1827)
Q Consensus 300 ~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~-a~~~ll~~L~~vl~ 378 (1827)
.+|.+++.-+...++.. +.........+|.++..++.--+...|..|. -.++++..+...++
T Consensus 42 ~iKkeIL~Li~t~i~~~-----------------~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~ 104 (319)
T PF08767_consen 42 TIKKEILKLIETFISKA-----------------EDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLG 104 (319)
T ss_dssp HHHHHHHHHHHHHHHT------------------S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcc-----------------CCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHH
Confidence 57788888787777542 1133456678899999888888888889998 88899999999999
Q ss_pred ccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhh
Q psy14676 379 GCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDL 458 (1827)
Q Consensus 379 ~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~ 458 (1827)
..+.+.++.++..+..+.-.= =. +|.++ -..+|..-.+.+..+.+++...
T Consensus 105 ~~~~~~v~~I~~~vf~~Tl~M--------------I~---------~d~~~-------yPe~r~~ff~LL~~i~~~~f~~ 154 (319)
T PF08767_consen 105 ELIQPQVPQILEAVFECTLPM--------------IN---------KDFEE-------YPEHRVNFFKLLRAINEHCFPA 154 (319)
T ss_dssp GGCCCCHHHHHHHHHHHHHHH--------------HS---------STSSS-------SHHHHHHHHHHHHHHHHHHTHH
T ss_pred HhhhhhHHHHHHHHHHHHHHH--------------HH---------hhhhh-------ChHHHHHHHHHHHHHHHHhHHH
Confidence 988899998888876553110 00 00011 2358889999999999988754
Q ss_pred hh----hhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcc
Q psy14676 459 IG----DMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTR 497 (1827)
Q Consensus 459 f~----~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g 497 (1827)
|. +.|..++..++-.++...++|...+++.+.++++...
T Consensus 155 l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~ 197 (319)
T PF08767_consen 155 LLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVS 197 (319)
T ss_dssp HHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 43 3677788888888899999999999999999998765
|
CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D. |
| >KOG1293|consensus | Back alignment and domain information |
|---|
Probab=89.14 E-value=84 Score=40.94 Aligned_cols=184 Identities=14% Similarity=0.134 Sum_probs=109.3
Q ss_pred hcCCCccccccchHHHHHHHhhhccccchhhHHHH-----HHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccc
Q psy14676 554 MTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKV-----VKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRI 628 (1827)
Q Consensus 554 ~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i-----~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~ 628 (1827)
++..++..|+.++++..-...-+.+.. .....++ ...+....-=.|-+++..|.-|+..+.+.+......+=
T Consensus 340 l~a~~~~~~~i~l~e~~i~~~~~~~~~-i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~-- 416 (678)
T KOG1293|consen 340 LAASDEKYRLILLNETLILNHLEYGLE-ISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLK-- 416 (678)
T ss_pred HhhcchhhhHHHhhhhhhhhhhhhhcc-hhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCc--
Confidence 567788899888876543322222111 1111122 22222222223456777776666655554443222211
Q ss_pred cccccccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhcc
Q psy14676 629 DLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKI 708 (1827)
Q Consensus 629 dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~ 708 (1827)
-..+++.|.+.|.++....+-+++.++..++-.|++.=....-.+.++-+-.+..+.|..+++-++.++-.++-.
T Consensus 417 -----~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~ 491 (678)
T KOG1293|consen 417 -----RNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFN 491 (678)
T ss_pred -----cchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhc
Confidence 234567777888999999999999999999999986433334446667777777888999999999999887754
Q ss_pred CCCccchhhhhhhhHHHhh-hhcccc--cchhhhhhHHHH
Q psy14676 709 QPNALVEPAAASILPQVLQ-IAKSPL--LQGAALTSMLEF 745 (1827)
Q Consensus 709 ~~~~~~~~~~~~llp~ll~-l~~s~~--~~~~al~~l~~~ 745 (1827)
........-+.++--..+. +...|. +|++++.=|.++
T Consensus 492 ~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 492 CDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred chHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 3222222233455555544 444333 467777655565
|
|
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=88.72 E-value=6.7 Score=51.05 Aligned_cols=176 Identities=14% Similarity=0.145 Sum_probs=123.2
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHH-HH-----hcCCCHHHHHHHHHHHHHHHhhccCCCCchhH
Q psy14676 5 KEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLST-AI-----EKQEDVSVQLEALDILSDLLSRFGALLPSFHF 78 (1827)
Q Consensus 5 ~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~-~l-----~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~ 78 (1827)
..++-+.+...||.+...+.... +...|.--.+. ++ ....++.+|...+..|..=.. .. ...+
T Consensus 250 ~~~V~~~ae~~LKr~~~~~ed~~------~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~--Aa---~~~~ 318 (501)
T PF13001_consen 250 NSSVSDRAEDLLKRLSVSLEDPD------LVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI--AA---TSFP 318 (501)
T ss_pred cchHHHHHHHHHhhcCCCCCCHH------HHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH--HH---hCCc
Confidence 45678888888988887765432 33333333221 11 012367788766666654211 11 1345
Q ss_pred HHHHHHhhhcCCC--CHHHHHHHHHHH---HHHHHhhchhHHHHHHHHHHHhccC-----------CCCHHHHHHHHHHH
Q psy14676 79 VILTALLPQLSSP--RQAVRKRTIVAL---SHLVMSCNLQLYTKLIDFLLEGLTT-----------NKSTSTNRTYIQCF 142 (1827)
Q Consensus 79 ~il~~ll~~L~~~--~~~VRk~Ai~aL---~~l~~~~~~~~~~~l~~~ll~~L~~-----------~~~~~~r~~ai~~l 142 (1827)
.++..+..+|.++ +..+|..++.-+ ......+++..+..+-+.+..++.. ..+...|..+.+++
T Consensus 319 ~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~l 398 (501)
T PF13001_consen 319 NILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETL 398 (501)
T ss_pred cHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHH
Confidence 6888888999877 679999999999 8999999988877666666665411 23467899999999
Q ss_pred HHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCC
Q psy14676 143 AAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPK 192 (1827)
Q Consensus 143 ~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~ 192 (1827)
|.+++..+..|..-+. ++..++..+.++.+|+|-..-+|+.+|...++.
T Consensus 399 G~L~~~~p~l~~~d~~-li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 399 GLLAKRAPSLFSKDLS-LIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred HHHHccCcccccccHH-HHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 9999999998865544 777888888889999998888888888876543
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >KOG2022|consensus | Back alignment and domain information |
|---|
Probab=88.64 E-value=1e+02 Score=41.41 Aligned_cols=369 Identities=14% Similarity=0.135 Sum_probs=179.7
Q ss_pred HHHHHhhhcHHHHHHHHHHHHhhhcC---CCC-hhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHh-hcccchHHHH
Q psy14676 841 LSHLVMSCNLQLYTKLIDFLLEGLTT---NKS-TSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKY-SREEDDELRE 915 (1827)
Q Consensus 841 L~~l~~~~~~~~~~~l~~~l~~~l~~---~~~-~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~-l~d~~~~vre 915 (1827)
+-..-..+++++++-+...+-..+.. +|. ..+-++.+..|..+++..|..-.+.+++++...... ++.-++.+-.
T Consensus 448 ~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~ 527 (982)
T KOG2022|consen 448 LMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLS 527 (982)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHH
Confidence 33334456677777666666655544 443 356689999999999999988777766655543321 1111344444
Q ss_pred HHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhh
Q psy14676 916 FCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQ 995 (1827)
Q Consensus 916 ~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~ 995 (1827)
++.+.++.+.++.+. .|-.+.
T Consensus 528 Tss~~igs~s~~l~e-----------------------------------------------------------~P~~ln 548 (982)
T KOG2022|consen 528 TSSDLIGSLSNWLGE-----------------------------------------------------------HPMYLN 548 (982)
T ss_pred HHHHHHHHHHHHHhc-----------------------------------------------------------CCcccC
Confidence 444444333322111 112222
Q ss_pred hhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHH-------HHHHhccC--ChhhHHHHHHHHHHHHHhcc
Q psy14676 996 QFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPR-------LQESLKSN--SALMRTTHQSNQTFNVIIQR 1066 (1827)
Q Consensus 996 ~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~-------L~~~L~s~--~~~~R~~a~~~L~~l~~~~~ 1066 (1827)
+++|.+++.| +..+++++ +...|.++++.-+..+.|. ..+.+... ....|...+..+|++.+...
T Consensus 549 ~sl~~L~~~L----h~sk~s~q--~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~ 622 (982)
T KOG2022|consen 549 PSLPLLFQGL----HNSKESEQ--AISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLK 622 (982)
T ss_pred chHHHHHHHh----cCchHHHH--HHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhcc
Confidence 3333333322 22222222 2233444544433333332 22333222 35678888888887666543
Q ss_pred ccccccccchhhhhhhhhhhhHHHHHhhc--------CCchhhHH-HHHHHHHHHHHHhccCC---CCCC--C-------
Q psy14676 1067 NDIHNHNEETSFIYSFYYFLLSPVIASVG--------DNFYKITA-EALLVLQQFVKVIRPLT---SPSS--Y------- 1125 (1827)
Q Consensus 1067 ~~l~~~~~~~~~~~~~l~~Lip~l~~~l~--------D~~~~V~~-eAl~~l~~lv~~l~~~~---~~~~--~------- 1125 (1827)
| ++...|+..|+..+++-++ ++..+.+. --+.+++.|+..+.... .+.. .
T Consensus 623 ----p-----Ee~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq 693 (982)
T KOG2022|consen 623 ----P-----EEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQ 693 (982)
T ss_pred ----H-----HhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhcccccc
Confidence 2 2333446666666654442 33333333 33556777777654321 0000 0
Q ss_pred -CcchhHHHHHHH---HHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhh-hhhhhhhHHHHHHhhhhhhhHHHHHH-HHH
Q psy14676 1126 -DFAPFTSDIYQC---TLVRLKAADIDQEVKERAISCMGQIICNLGDYL-KSELPVCLPILLDRLRNEITRLTTVK-ALT 1199 (1827)
Q Consensus 1126 -~~~~~l~~l~~~---ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l-~~~l~~lL~~Ll~~L~~e~tR~~av~-al~ 1199 (1827)
.....+.++++. +++... .+..|-+.++..++.=+...++.+ .|.++.+.+-++....+. .|+- .++
T Consensus 694 ~~il~v~~k~i~~~~kv~s~~~---~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~----~a~tl~l~ 766 (982)
T KOG2022|consen 694 FPILQVLQKAIPVFEKVLSMWL---GLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSC----LAVTLSLI 766 (982)
T ss_pred CCHHHHHHHHHHHHHHHHHHHh---cchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccch----HHHHHHHH
Confidence 111223334333 333222 234466777666665555455444 455666555555432221 1111 111
Q ss_pred H---HhcCCC-------ccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcCh---HhHHHHHHHhhhh
Q psy14676 1200 K---IAASPL-------RIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAIST---EMLNKVTVELAPL 1266 (1827)
Q Consensus 1200 ~---ia~~~~-------~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~---~~~~~ll~~L~~l 1266 (1827)
. ++.+.. ..++.......+-.+-+--=.|+.+.-..-+..+...++..+.-+.+ ++-.-+++....+
T Consensus 767 ~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~l 846 (982)
T KOG2022|consen 767 AACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFIL 846 (982)
T ss_pred HHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHh
Confidence 1 111110 11111112221111111111245566667777888888877765433 4445566677788
Q ss_pred cCCCChhHHHHHHHHHHHHHHhCC
Q psy14676 1267 VSESDLHIAQLTLTLLTSIAKIQP 1290 (1827)
Q Consensus 1267 l~d~D~~l~~~al~~L~~l~~~~~ 1290 (1827)
+.....-.-.++...++++.....
T Consensus 847 l~~pE~~~i~aa~qF~t~~~~~~~ 870 (982)
T KOG2022|consen 847 LNSPEPTTIRAASQFLTALATYAT 870 (982)
T ss_pred cCCCccHHHHHHHHHHHHHHhhcc
Confidence 888777777777888888776543
|
|
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=88.57 E-value=92 Score=40.70 Aligned_cols=95 Identities=16% Similarity=0.146 Sum_probs=66.6
Q ss_pred hhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy14676 1080 YSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCM 1159 (1827)
Q Consensus 1080 ~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~al 1159 (1827)
-..+..++|+++..+..++..||...+..++++-+.+++. ..++==+. .++......+...-||..++--+
T Consensus 18 e~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~-----~~I~LPv~----~Ll~q~~~~~~s~~vrnfsliyi 88 (501)
T PF13001_consen 18 EQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSN-----PSIQLPVE----ALLKQYKEPSDSSFVRNFSLIYI 88 (501)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccC-----CcCcCcHH----HHHHHHhCCCCchHHHHHHHHHH
Confidence 3448899999999999999999999999999999888741 22221133 34445554455677888888666
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHhhh
Q psy14676 1160 GQIICNLGDYLKSELPVCLPILLDRLR 1186 (1827)
Q Consensus 1160 g~l~~~~g~~l~~~l~~lL~~Ll~~L~ 1186 (1827)
..=+.++.. ++...++|.+++.+.
T Consensus 89 ~~g~~Rl~~---~e~~~llP~ll~~is 112 (501)
T PF13001_consen 89 EMGFDRLDD---EERRELLPSLLKGIS 112 (501)
T ss_pred HHhhhcCCH---HHHHHHHHHHHHhhc
Confidence 554444322 456778888888886
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=88.29 E-value=3.3 Score=40.55 Aligned_cols=79 Identities=19% Similarity=0.092 Sum_probs=62.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q psy14676 43 STAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFL 122 (1827)
Q Consensus 43 l~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~l 122 (1827)
+..+. ++.+.+|..++..|..+++.-. .-....+.++..++..|+|+++-|=-.|+.+++.++...++..+..+++.+
T Consensus 9 l~~L~-dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~~~y 86 (92)
T PF10363_consen 9 LSDLN-DPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILLDEY 86 (92)
T ss_pred HHHcc-CCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHHHHH
Confidence 34444 4578899999999999999876 111245789999999999999999999999999999999887776666555
Q ss_pred H
Q psy14676 123 L 123 (1827)
Q Consensus 123 l 123 (1827)
.
T Consensus 87 ~ 87 (92)
T PF10363_consen 87 A 87 (92)
T ss_pred h
Confidence 4
|
|
| >PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism | Back alignment and domain information |
|---|
Probab=88.19 E-value=18 Score=45.92 Aligned_cols=197 Identities=17% Similarity=0.184 Sum_probs=126.4
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhH-HHH
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHF-VIL 81 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~-~il 81 (1827)
|.+..-|+..-.-|..+.+..+... .-+++.+...+.+.+........-.+.|.+++.+...|..-+...|. -+.
T Consensus 144 S~D~rER~~lk~~l~~iy~k~~~~r----~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~ 219 (409)
T PF01603_consen 144 SPDPRERDYLKTILHRIYGKFPNLR----SFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLR 219 (409)
T ss_dssp SSTHHHHHHHHHHHHHHHHH-TTTH----HHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHH
Confidence 4555688888888999998888754 35667777777777765556666789999999999999866666555 555
Q ss_pred HHHhhhcCCCCH-HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc-hhhHHhHHH
Q psy14676 82 TALLPQLSSPRQ-AVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG-HRFAEHIER 159 (1827)
Q Consensus 82 ~~ll~~L~~~~~-~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~-~~~~p~l~~ 159 (1827)
..++|....+.. .....=..|+..+++.= +.+...++..++..--. .+....-..+.-+..+.+..+ ..|.+....
T Consensus 220 ~vllPLh~~~~~~~y~~~L~~~~~~f~~kd-p~l~~~~i~~llk~WP~-t~s~Kev~FL~el~~il~~~~~~~f~~i~~~ 297 (409)
T PF01603_consen 220 KVLLPLHKSPHLSSYHQQLSYCVVQFLEKD-PSLAEPVIKGLLKHWPK-TNSQKEVLFLNELEEILEVLPPEEFQKIMVP 297 (409)
T ss_dssp HTTGGGGGSTGGGGTHHHHHHHHHHHHHH--GGGHHHHHHHHHHHS-S-S-HHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHhCCC-CCchhHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 778888877653 44555566777777642 33444455555554322 234445556677777777554 678888888
Q ss_pred HHHHHHhhcccCchHHHHHHHHHH--HHHHHhCCCccccchHHHHHHHHHHh
Q psy14676 160 VMPLILKYSREEDDELREFCLQAC--EAFVQRCPKEITPHIQSITELCLTYI 209 (1827)
Q Consensus 160 i~p~l~~~~~~~~delRe~al~al--e~~~~~~p~e~~p~l~~ii~~ll~~l 209 (1827)
++..+-+.++.+.-.|-|.|+..+ +.++.. +..+-..++|.++..+
T Consensus 298 lf~~la~ci~S~h~qVAErAl~~w~n~~~~~l----i~~~~~~i~p~i~~~L 345 (409)
T PF01603_consen 298 LFKRLAKCISSPHFQVAERALYFWNNEYFLSL----ISQNSRVILPIIFPAL 345 (409)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHH----HHCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHH----HHhChHHHHHHHHHHH
Confidence 888888888888888888777654 333332 2344556777777665
|
The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A. |
| >KOG1789|consensus | Back alignment and domain information |
|---|
Probab=88.11 E-value=1.1e+02 Score=41.52 Aligned_cols=163 Identities=20% Similarity=0.219 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCC-CCHhHHHHHHHHHhh-----hhhhh
Q psy14676 1274 IAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTP-TSEEVKSAASYTLGS-----IAVGN 1347 (1827)
Q Consensus 1274 l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~-~s~eVr~aAa~aLG~-----i~~~~ 1347 (1827)
-.+.++.+|..+...+|+ +++.+|.=.+.+ ..++.|...+.. ....+..-|..-+.. -++.+
T Consensus 1741 ~v~m~LtAL~Nli~~nPd------lasvfgSe~~li------g~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~ 1808 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPD------LASVFGSEILLI------GNFPLLITYLRCRKHPKLQILALQVILLATANKECVTD 1808 (2235)
T ss_pred HHHHHHHHHHHHHhhCcc------hhhhccchhhhh------cccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHH
Confidence 346678888888888875 333333211111 122333333332 233444444333322 12233
Q ss_pred hh--hhHHHHHHhhhcCchhhHHHHHHHHHHHhhccccccchhhhhc-hHHHHHHHHhhhhcCCchhHHHHHHHHHHHhh
Q psy14676 1348 LQ--QYVPFVLKEIENQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQ-FVPAIWAQLFLHCECQEEGTRNVVAECLGKLT 1424 (1827)
Q Consensus 1348 l~--~~LP~Il~~i~~~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~-~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~ 1424 (1827)
+. ..|-.+++.+.+.|+.+..+|+.|..+.+ ..+.|.+.++. -+..|.+.+ |.++....|..+|+-+|||.
T Consensus 1809 ~a~~~vL~~LL~lLHS~PS~R~~vL~vLYAL~S---~~~i~keA~~hg~l~yil~~~---c~~~~~QqRAqaAeLlaKl~ 1882 (2235)
T KOG1789|consen 1809 LATCNVLTTLLTLLHSQPSMRARVLDVLYALSS---NGQIGKEALEHGGLMYILSIL---CLTNSDQQRAQAAELLAKLQ 1882 (2235)
T ss_pred HHhhhHHHHHHHHHhcChHHHHHHHHHHHHHhc---CcHHHHHHHhcCchhhhhHHH---hccCcHHHHHHHHHHHHHhh
Confidence 32 26677788888888888888888877754 22233333332 222233322 34666779999999999998
Q ss_pred c---cCCC------cchHHHHHhhhcCCHHHHHHHHHHHHHH
Q psy14676 1425 L---IDPS------NLLPRLQESLKSNSALMRTTVLTAVKFT 1457 (1827)
Q Consensus 1425 ~---~~p~------~~lP~L~~~l~~~~~~~R~t~l~Alk~~ 1457 (1827)
. +.|+ .++|...--.-..+| .++++++..+
T Consensus 1883 Adkl~GPrV~ITL~kFLP~~f~d~~RD~P---EAaVH~fE~T 1921 (2235)
T KOG1789|consen 1883 ADKLTGPRVTITLIKFLPEIFADSLRDSP---EAAVHMFEST 1921 (2235)
T ss_pred hccccCCceeeehHHhchHHHHHHHhcCH---HHHHHHHhcc
Confidence 5 4454 344433222223344 3456665544
|
|
| >KOG1293|consensus | Back alignment and domain information |
|---|
Probab=87.73 E-value=1e+02 Score=40.21 Aligned_cols=145 Identities=12% Similarity=0.084 Sum_probs=94.2
Q ss_pred hhhhhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChH-hHHHHHHHh
Q psy14676 1185 LRNEITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTE-MLNKVTVEL 1263 (1827)
Q Consensus 1185 L~~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~-~~~~ll~~L 1263 (1827)
+++.+.+.+|.-.+-.+..+.-..+-++-..++...+...+.+.+-.+..+++.++..++..+++- ... ...+.+..+
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~-kskfl~~ngId~l 466 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNL-KSKFLRNNGIDIL 466 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccH-HHHHHHcCcHHHH
Confidence 345555777766666555431111111223456777778888888899999999999999987752 111 233455666
Q ss_pred hhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHH-HHHhcCCCCHhHHHHHHHHHhh
Q psy14676 1264 APLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQV-ILNAFTPTSEEVKSAASYTLGS 1342 (1827)
Q Consensus 1264 ~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~-~l~~~~~~s~eVr~aAa~aLG~ 1342 (1827)
...+++.|..+++.++.+|..++-.+..... . .+...+..- +....+|+..+|.+.+.+-|-+
T Consensus 467 ~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k-------------~---~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRN 530 (678)
T KOG1293|consen 467 ESMLTDPDFNSRANSLWVLRHLMFNCDEEEK-------------F---QLLAKIPANLILDLINDPDWAVQEQCFQLLRN 530 (678)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHhcchHHHH-------------H---HHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 7889999999999999999887764432110 0 112233333 3344467888999999988888
Q ss_pred hhhh
Q psy14676 1343 IAVG 1346 (1827)
Q Consensus 1343 i~~~ 1346 (1827)
.-.+
T Consensus 531 l~c~ 534 (678)
T KOG1293|consen 531 LTCN 534 (678)
T ss_pred hhcC
Confidence 6554
|
|
| >KOG2149|consensus | Back alignment and domain information |
|---|
Probab=87.71 E-value=4.3 Score=49.43 Aligned_cols=130 Identities=15% Similarity=0.172 Sum_probs=102.5
Q ss_pred HHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhcc
Q psy14676 1039 LQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRP 1118 (1827)
Q Consensus 1039 L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~ 1118 (1827)
+...++.-+..+|..|+..+..+..+.+..+..| +..+++.+...+.|+.+.||....+.+..++-...+
T Consensus 63 Ll~qlkHhNakvRkdal~glkd~l~s~p~~l~~~----------~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~ 132 (393)
T KOG2149|consen 63 LLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSH----------LYALLQKLRELILDDDSLVRDALYQLLDSLILPACK 132 (393)
T ss_pred HHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHH----------HHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcch
Confidence 3444577789999999999995555455555555 778899999999999999999999988887765543
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhh
Q psy14676 1119 LTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLR 1186 (1827)
Q Consensus 1119 ~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~ 1186 (1827)
.+..|++.-+++.+...+. ...+++|+-+...+..++...++.+..+...+++.+.+.+.
T Consensus 133 ------e~~sp~~~l~~~yi~~AMT--hit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~ 192 (393)
T KOG2149|consen 133 ------EDQSPMVSLLMPYISSAMT--HITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVIS 192 (393)
T ss_pred ------hhhcchHHHHHHHHHHHHh--hccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 4477888888888888877 78899999999999999999988777665556666655543
|
|
| >KOG0946|consensus | Back alignment and domain information |
|---|
Probab=87.55 E-value=12 Score=49.04 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHHHHHcCCchhhh---HHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHh
Q psy14676 258 WKVRRAAAKCLEAIIATRRDLIGDM---YRLVSPPLIARFKEREENVKSDIFHAYMALLK 314 (1827)
Q Consensus 258 WkVRraAak~L~~l~~~~~~~l~~~---~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~ 314 (1827)
+.||+.+.+.|.++.+++|..+.+. ++.-+..|+..+.|..|-+|-+++.-+.++.+
T Consensus 136 F~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k 195 (970)
T KOG0946|consen 136 FHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVK 195 (970)
T ss_pred hhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHc
Confidence 4799999999999999999655542 33445567778899999999999999999885
|
|
| >KOG2137|consensus | Back alignment and domain information |
|---|
Probab=87.40 E-value=14 Score=48.25 Aligned_cols=127 Identities=14% Similarity=0.190 Sum_probs=88.6
Q ss_pred hHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHhchhhHH
Q psy14676 77 HFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGL-TTNKSTSTNRTYIQCFAAICRQAGHRFAE 155 (1827)
Q Consensus 77 ~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L-~~~~~~~~r~~ai~~l~~la~~~~~~~~p 155 (1827)
...|++.+...+.+.+..++.+++..+..+++.+.-....+-+-.-+.+| .+.....++..++-|++.++......-
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~-- 464 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAA-- 464 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHH--
Confidence 45788888888999999999999999999999998555554444444444 234567789999999999995444322
Q ss_pred hHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCC--ccc--cchHHHHHHHH
Q psy14676 156 HIERVMPLILKYSREEDDELREFCLQACEAFVQRCPK--EIT--PHIQSITELCL 206 (1827)
Q Consensus 156 ~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~--e~~--p~l~~ii~~ll 206 (1827)
-++.+.|++.. .+..++++.-.++...+.+...-+. ++. ..+|.++++..
T Consensus 465 v~d~~lpi~~~-~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~ 518 (700)
T KOG2137|consen 465 VLDELLPILKC-IKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSV 518 (700)
T ss_pred hHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhh
Confidence 35666666555 4456888887888888888776655 332 23444555443
|
|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=87.39 E-value=2.8 Score=40.99 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=62.9
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHH
Q psy14676 1433 PRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQ 1512 (1827)
Q Consensus 1433 P~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr 1512 (1827)
....+.+.++.+-+|+-.+.-++.++.... . +.. ....++..++..++|+|+.|=
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~-~~~----------------------~~~~il~l~l~~L~d~DsyVY 60 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS--E-PVI----------------------DIPKILDLFLSQLKDEDSYVY 60 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC--c-chh----------------------hHHHHHHHHHHHcCCCCchHH
Confidence 344566778888899999999999997654 1 111 124678999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHH
Q psy14676 1513 NLAVKCLGPLVNKVKEFQVETIVDAL 1538 (1827)
Q Consensus 1513 ~~a~~~Lg~L~~~l~~~~~~~~v~~l 1538 (1827)
-||+++|..|+...+...+..+++..
T Consensus 61 L~aI~~L~~La~~~p~~vl~~L~~~y 86 (92)
T PF10363_consen 61 LNAIKGLAALADRHPDEVLPILLDEY 86 (92)
T ss_pred HHHHHHHHHHHHHChHHHHHHHHHHH
Confidence 99999999999888776666666544
|
|
| >KOG2005|consensus | Back alignment and domain information |
|---|
Probab=86.95 E-value=15 Score=47.11 Aligned_cols=47 Identities=15% Similarity=0.243 Sum_probs=39.9
Q ss_pred hhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhc
Q psy14676 1315 ADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIEN 1361 (1827)
Q Consensus 1315 ~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~ 1361 (1827)
-.++.++-+...|...+|-.+|.+++|-+|+|....-+..++.++.+
T Consensus 674 ~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARla~mLrqlaS 720 (878)
T KOG2005|consen 674 VNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARLAQMLRQLAS 720 (878)
T ss_pred chHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHHHHHHHHHHH
Confidence 36889999999999999999999999999999877777777776543
|
|
| >KOG2160|consensus | Back alignment and domain information |
|---|
Probab=86.72 E-value=20 Score=43.30 Aligned_cols=142 Identities=15% Similarity=0.163 Sum_probs=94.1
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhH-HHH
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHF-VIL 81 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~-~il 81 (1827)
++...+|.-++-.+.|++.+=|..- ...+=..-+++|+..+.++.+..+|..||++++.++.++.+....+.. .=.
T Consensus 135 ~~~~~lR~~Aa~Vigt~~qNNP~~Q---e~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~ 211 (342)
T KOG2160|consen 135 NSDAELRELAARVIGTAVQNNPKSQ---EQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGY 211 (342)
T ss_pred CCcHHHHHHHHHHHHHHHhcCHHHH---HHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCH
Confidence 3456799999999999998888632 112223356788888887778889999999999999999886544321 125
Q ss_pred HHHhhhcCC--CCHHHHHHHHHHHHHHHHhhchh--HH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Q psy14676 82 TALLPQLSS--PRQAVRKRTIVALSHLVMSCNLQ--LY-TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICR 147 (1827)
Q Consensus 82 ~~ll~~L~~--~~~~VRk~Ai~aL~~l~~~~~~~--~~-~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~ 147 (1827)
..|.+.|++ .+...+.+|+.-++.+...-... .+ ...++..+..+....+..++..++.++-+...
T Consensus 212 ~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 212 QVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 566777877 56788888888888888754321 11 12234444444333344566666666555554
|
|
| >KOG0803|consensus | Back alignment and domain information |
|---|
Probab=86.28 E-value=54 Score=46.78 Aligned_cols=206 Identities=12% Similarity=0.148 Sum_probs=132.2
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHH---HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHH
Q psy14676 79 VILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTK---LIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAE 155 (1827)
Q Consensus 79 ~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~---l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p 155 (1827)
.-+..++..|.--++..|.+|...++.++.....+.... ....+...|..+.+..+|....+.+..+...+.+++.|
T Consensus 41 sel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp 120 (1312)
T KOG0803|consen 41 SELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSP 120 (1312)
T ss_pred HHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 345566777777889999999999999998776554433 24555556666788999999999999999999999999
Q ss_pred hHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccc-----hHHHHHHHHHHh-ccCCCCCcccccccCCCCCC
Q psy14676 156 HIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPH-----IQSITELCLTYI-TYDPNYNYEDEEEGLGGEGG 229 (1827)
Q Consensus 156 ~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~-----l~~ii~~ll~~l-~~dpn~~~~ddd~~~~~~~~ 229 (1827)
|+..++|..+-...+.+-.+-+.| ..+|-...+++-.++ -+.+.+.+.+.+ +..|.- +
T Consensus 121 ~LK~li~~wl~~~~d~~~~vs~aa---~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~s-l------------ 184 (1312)
T KOG0803|consen 121 FLKSLIPPWLGGQFDLDYPVSEAA---KASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDS-L------------ 184 (1312)
T ss_pred HHHhhhhhhhheecccchHHHHHH---HHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccc-c------------
Confidence 999999999887665555554444 444444444443333 245555555542 222110 0
Q ss_pred CCCCCCcccCCCCCCCCCCCCC---CCccchhhHHHHHHHHHHHHHHHcCC--chhhhHH---hh--hHHHHhhcCCCCH
Q psy14676 230 GEGMDTEEEDGEDEGEDDNEYS---DDDDMSWKVRRAAAKCLEAIIATRRD--LIGDMYR---LV--SPPLIARFKEREE 299 (1827)
Q Consensus 230 ~~~~d~~~~d~dde~e~~~e~s---dddD~sWkVRraAak~L~~l~~~~~~--~l~~~~~---~v--~p~L~~~l~e~ee 299 (1827)
++..|. +-+-+.-||-+++..++-.+....++ .+..... .+ ...+-+.+++..+
T Consensus 185 ----------------Sd~~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~ 248 (1312)
T KOG0803|consen 185 ----------------SDLRTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSP 248 (1312)
T ss_pred ----------------chhhhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCc
Confidence 000010 01223456777788888887765553 1111111 11 2234466788899
Q ss_pred hHHHHHHHHHHHHHhhh
Q psy14676 300 NVKSDIFHAYMALLKGT 316 (1827)
Q Consensus 300 ~VR~aa~~al~~ll~~~ 316 (1827)
.+|.+....+..++.-.
T Consensus 249 ~i~~~~~ell~~l~~~i 265 (1312)
T KOG0803|consen 249 SIKVALLELLLSLIDDI 265 (1312)
T ss_pred chhHHHHHHHHHHHhhh
Confidence 99999999888887543
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.82 E-value=12 Score=47.01 Aligned_cols=107 Identities=20% Similarity=0.192 Sum_probs=77.7
Q ss_pred cCCchhHHHHHHHHHHHhhccCCCcchHHHHHhh-hcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhc
Q psy14676 1406 ECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESL-KSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKD 1484 (1827)
Q Consensus 1406 ~~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l-~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~ 1484 (1827)
.+.+++||++|-.+||-.+.-++..+ |...+.| .+-++.+|..+..|+.-.+...+..
T Consensus 562 sD~nDDVrRAAViAlGfvc~~D~~~l-v~tvelLs~shN~hVR~g~AvaLGiacag~G~~-------------------- 620 (926)
T COG5116 562 SDGNDDVRRAAVIALGFVCCDDRDLL-VGTVELLSESHNFHVRAGVAVALGIACAGTGDK-------------------- 620 (926)
T ss_pred ccCchHHHHHHHHheeeeEecCcchh-hHHHHHhhhccchhhhhhhHHHhhhhhcCCccH--------------------
Confidence 46678899999999999888777666 4555555 5779999999999999888765421
Q ss_pred ccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhh---hHHHHHHHHHhhhc
Q psy14676 1485 SIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEF---QVETIVDALCSNMV 1543 (1827)
Q Consensus 1485 ~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~---~~~~~v~~l~~~l~ 1543 (1827)
.-+..+-.++.|++..||++|.-++|-+.-..+.+ .++.+++.+.+.+.
T Consensus 621 ----------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~ 672 (926)
T COG5116 621 ----------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIV 672 (926)
T ss_pred ----------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHh
Confidence 12355556789999999999999999877433322 45666666665554
|
|
| >KOG2160|consensus | Back alignment and domain information |
|---|
Probab=85.05 E-value=14 Score=44.71 Aligned_cols=151 Identities=17% Similarity=0.187 Sum_probs=92.1
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh--HHHHHHHHHHHhcCCCccccchhhhh
Q psy14676 1139 LVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT--RLTTVKALTKIAASPLRIDLRPILTD 1216 (1827)
Q Consensus 1139 l~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t--R~~av~al~~ia~~~~~~dl~p~~~~ 1216 (1827)
...+..+..+.+=|+.|+.-+..+++.......=.--..+..++..+++..+ |..|++.+|+++...++.+-.-+=..
T Consensus 87 ~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~ 166 (342)
T KOG2160|consen 87 IVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELG 166 (342)
T ss_pred hhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcc
Confidence 3344445678888999999999999887432111111234444447776655 99999999999986443221111112
Q ss_pred hHhhhhhhhcch-hHHHHHHHHHHHHHHHHhCCCCcChH-hHHHHHHHhhhhcCC--CChhHHHHHHHHHHHHHHhCC
Q psy14676 1217 GIPILGSFLRKN-QRALKLSTLLLLDTLLVNYPSAISTE-MLNKVTVELAPLVSE--SDLHIAQLTLTLLTSIAKIQP 1290 (1827)
Q Consensus 1217 ~l~~L~~~Lrk~-~r~lR~~al~aL~~L~~~~~~~l~~~-~~~~ll~~L~~ll~d--~D~~l~~~al~~L~~l~~~~~ 1290 (1827)
.++.|...+.++ .-++|..++.|++.++.+.......- -+.+ ...|.+.+.. .+..+..-++..++.+.+..+
T Consensus 167 ~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 167 ALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence 344444444433 46788999999999999876542211 0011 2233455555 566677778888888887554
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=84.99 E-value=13 Score=45.33 Aligned_cols=168 Identities=14% Similarity=0.144 Sum_probs=91.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchh-------HHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh
Q psy14676 41 KLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFH-------FVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ 113 (1827)
Q Consensus 41 ~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~-------~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~ 113 (1827)
.|++.+ ..+.++..-.+..+++++..-+....-.+ ......++..+++++..++..|...+..++...+..
T Consensus 62 ~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~ 139 (312)
T PF03224_consen 62 NLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKR 139 (312)
T ss_dssp HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT-
T ss_pred HHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCcc
Confidence 444444 13678889999999999887663221111 136677778888899999999999999999988765
Q ss_pred HHH---HHHHHHHHhccCC---CCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhc-----ccCchHHHHHHHHH
Q psy14676 114 LYT---KLIDFLLEGLTTN---KSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYS-----REEDDELREFCLQA 182 (1827)
Q Consensus 114 ~~~---~l~~~ll~~L~~~---~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~-----~~~~delRe~al~a 182 (1827)
... ..++.++..|.+. ++...+..++++++.+.+.-..+-.=.-.+.++.+...+ ......+. ...++
T Consensus 140 ~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q-l~Y~~ 218 (312)
T PF03224_consen 140 SEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ-LQYQA 218 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHH-HHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh-HHHHH
Confidence 544 6677777776542 223456889999999986554331111144555555554 12222222 22332
Q ss_pred -HHHHHHhCCCccccch--HHHHHHHHHHhcc
Q psy14676 183 -CEAFVQRCPKEITPHI--QSITELCLTYITY 211 (1827)
Q Consensus 183 -le~~~~~~p~e~~p~l--~~ii~~ll~~l~~ 211 (1827)
+-.|.-...+++...+ ..+++.+.+.++.
T Consensus 219 ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~ 250 (312)
T PF03224_consen 219 LLCLWLLSFEPEIAEELNKKYLIPLLADILKD 250 (312)
T ss_dssp HHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHhccchHHHHHHHHHh
Confidence 3455444433222111 1277777766653
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=84.81 E-value=1.3e+02 Score=38.61 Aligned_cols=197 Identities=17% Similarity=0.159 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCch-hHHHHHHHhh
Q psy14676 8 LRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSF-HFVILTALLP 86 (1827)
Q Consensus 8 ~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~-~~~il~~ll~ 86 (1827)
-|=.++-||..+++.+|.+.. ....-|.|+..+.+. ..--|.-|.-++.+.+......-... .+.+.+.|..
T Consensus 103 ~Ri~aA~ALG~l~~~~~~~~~------~~~~~~~L~~~L~S~-sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 103 ARIAAAKALGLLLSYWPESSL------QEIFQPLLLPYLNSP-SATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHhcccchH------HHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 467788899999999988652 112223455555543 55667888888888888876543221 2456666666
Q ss_pred hcCCCC-----------HHHHHHHHHHHHHHHHhhc--------------------hh---------HHHHHHHHHHHhc
Q psy14676 87 QLSSPR-----------QAVRKRTIVALSHLVMSCN--------------------LQ---------LYTKLIDFLLEGL 126 (1827)
Q Consensus 87 ~L~~~~-----------~~VRk~Ai~aL~~l~~~~~--------------------~~---------~~~~l~~~ll~~L 126 (1827)
.|.+++ ..+|..+-.-+..|...-- +. .....++.+...+
T Consensus 176 ~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l 255 (441)
T PF12054_consen 176 ILENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSL 255 (441)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhc
Confidence 676332 2566666666666655432 01 1122233334333
Q ss_pred cCCCC-------HHHHHHHH---------------HHHHHHHH------HhchhhHHhHHHHHHHHHhhcccCchHHHHH
Q psy14676 127 TTNKS-------TSTNRTYI---------------QCFAAICR------QAGHRFAEHIERVMPLILKYSREEDDELREF 178 (1827)
Q Consensus 127 ~~~~~-------~~~r~~ai---------------~~l~~la~------~~~~~~~p~l~~i~p~l~~~~~~~~delRe~ 178 (1827)
..... .+.|+.+. ...+.+|. ..|+++.|-+..+|..+. .+++.+++..
T Consensus 256 ~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~KLnPiIrpLMdSIK---~Een~~LQ~r 332 (441)
T PF12054_consen 256 SPSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKKLNPIIRPLMDSIK---REENELLQQR 332 (441)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHhh---ccccHHHHHH
Confidence 22110 11122222 22222322 235666655554444333 3567889999
Q ss_pred HHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCC
Q psy14676 179 CLQACEAFVQRCPKEITPHIQSITELCLTYITYDPN 214 (1827)
Q Consensus 179 al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn 214 (1827)
+..++..|+..|-..-..--++|+.-+..++..|+.
T Consensus 333 sA~slA~Li~~~~~rkp~PndKIvkNLc~flC~D~s 368 (441)
T PF12054_consen 333 SAESLARLIQLCVDRKPCPNDKIVKNLCTFLCVDTS 368 (441)
T ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhccCcc
Confidence 999999999987522222346788888888887754
|
This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important. |
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=84.67 E-value=1.9 Score=43.92 Aligned_cols=73 Identities=12% Similarity=0.185 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCch-hHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHH
Q psy14676 36 RRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSF-HFVILTALLPQLSSPRQAVRKRTIVALSHLVM 108 (1827)
Q Consensus 36 ~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~-~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~ 108 (1827)
-+++-.|++.++...|+.+..-||.=||+++...+....-. .-..-..+++.|+++++.||+.|..|+..++.
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34667777777444478888889999999999875421101 12356678889999999999999999988765
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=84.28 E-value=27 Score=40.71 Aligned_cols=155 Identities=13% Similarity=0.220 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccC------chHHHHHHHHHHHHHHH
Q psy14676 115 YTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREE------DDELREFCLQACEAFVQ 188 (1827)
Q Consensus 115 ~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~------~delRe~al~ale~~~~ 188 (1827)
++-+++.+++.|..+.+...|.++++++-. .+-+.+++|.+++++++. +-++--.-+...-+++.
T Consensus 195 Lq~YF~kvisal~dEs~~~~r~aAl~sLr~---------dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~ 265 (450)
T COG5095 195 LQMYFDKVISALLDESDEQTRDAALESLRN---------DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLK 265 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhc
Confidence 344566666666555556677777766532 123566777766665431 11110000111111111
Q ss_pred hCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHH
Q psy14676 189 RCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCL 268 (1827)
Q Consensus 189 ~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L 268 (1827)
.----+.||+.+++|.++.++.-.. .+. +++|..-+-+|..||..+
T Consensus 266 N~~iFvdPY~hqlmPSilTcliakk-------------------lg~---------------~p~dhe~~alRd~AA~ll 311 (450)
T COG5095 266 NKYIFVDPYLHQLMPSILTCLIAKK-------------------LGN---------------VPDDHEHYALRDVAADLL 311 (450)
T ss_pred CCceeecHHHHHHHHHHHHHHHHHH-------------------hcC---------------CCcchhHHHHHHHHHHHH
Confidence 1112467999999999887663210 000 011233467999999999
Q ss_pred HHHHHHcCCchhhhHHhhhHHHHhhcCC--CCHhHHHHHHHHHHHH
Q psy14676 269 EAIIATRRDLIGDMYRLVSPPLIARFKE--REENVKSDIFHAYMAL 312 (1827)
Q Consensus 269 ~~l~~~~~~~l~~~~~~v~p~L~~~l~e--~ee~VR~aa~~al~~l 312 (1827)
+-+.+..+.....+-+.+.-.+.+.|-+ +-+.-...++.+++.+
T Consensus 312 ~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l 357 (450)
T COG5095 312 KYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSIL 357 (450)
T ss_pred HHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhh
Confidence 9988876654333334444455555533 3334455555555444
|
|
| >PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=84.07 E-value=45 Score=41.16 Aligned_cols=103 Identities=21% Similarity=0.319 Sum_probs=69.9
Q ss_pred HHHHhhccCCCCchhHHHHHHHhhhcCC-CCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q psy14676 63 SDLLSRFGALLPSFHFVILTALLPQLSS-PRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQC 141 (1827)
Q Consensus 63 ~~l~~~~~~~l~~~~~~il~~ll~~L~~-~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~ 141 (1827)
+.++...++ .+....+++.+.+.+.. .+......++.|++.-...++.+.-..+++.+..++++.. ..+|+.++.+
T Consensus 8 ~~~L~~l~~--~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk-~~vR~~w~~~ 84 (339)
T PF12074_consen 8 ASMLSSLPS--SSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKK-PPVRRAWLLC 84 (339)
T ss_pred HHHHHhCCC--cchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 444444444 23556888889999874 6788999999999999888855555677888888886643 3499999999
Q ss_pred HHHHHHHhc-hhhHHhHHHHHHHHHhhc
Q psy14676 142 FAAICRQAG-HRFAEHIERVMPLILKYS 168 (1827)
Q Consensus 142 l~~la~~~~-~~~~p~l~~i~p~l~~~~ 168 (1827)
+|.+....+ ....++...++|.+.+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 112 (339)
T PF12074_consen 85 LGEALWESPNSDSLKFAEPFLPKLLQSL 112 (339)
T ss_pred HHHHHhhccCchHHHHHHHHHHHHHHHH
Confidence 999987111 122333444555444443
|
This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM. |
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=83.66 E-value=75 Score=37.03 Aligned_cols=148 Identities=16% Similarity=0.191 Sum_probs=85.0
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchHH
Q psy14676 121 FLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQS 200 (1827)
Q Consensus 121 ~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ 200 (1827)
.++-.+.+..++......++++..++.+-. ...+.++..+....+.+..+.+-.+..-+-.+...-+.-+ |++..
T Consensus 4 ~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~ 78 (234)
T PF12530_consen 4 LLLYKLGKISDPELQLPLLEALPSLACHKN----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQP 78 (234)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHhccCc----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHH
Confidence 344445555667777788888888876552 2334444444444444555543333333323332222222 44433
Q ss_pred HHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchh
Q psy14676 201 ITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIG 280 (1827)
Q Consensus 201 ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~ 280 (1827)
++......+... + -+++..|....+.+.++..++..+|+.
T Consensus 79 ~L~~~~~r~~~~-~-------------------------------------~~~~~~~~~~i~~a~s~~~ic~~~p~~-- 118 (234)
T PF12530_consen 79 LLLLLILRIPSS-F-------------------------------------SSKDEFWECLISIAASIRDICCSRPDH-- 118 (234)
T ss_pred HHHHHHhhcccc-c-------------------------------------CCCcchHHHHHHHHHHHHHHHHhChhh--
Confidence 332221111000 0 012346888888888999999998874
Q ss_pred hhHHhhhHHHHhhc-CCCCHhHHHHHHHHHHHHHhh
Q psy14676 281 DMYRLVSPPLIARF-KEREENVKSDIFHAYMALLKG 315 (1827)
Q Consensus 281 ~~~~~v~p~L~~~l-~e~ee~VR~aa~~al~~ll~~ 315 (1827)
-..+++.+..-+ ++..+.++.-++.++..+++.
T Consensus 119 --g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 119 --GVDLLPLLSGCLNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred --HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 445555666666 788888999999999999854
|
|
| >KOG2062|consensus | Back alignment and domain information |
|---|
Probab=83.50 E-value=1.7e+02 Score=38.84 Aligned_cols=158 Identities=17% Similarity=0.180 Sum_probs=96.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhh
Q psy14676 1146 DIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFL 1225 (1827)
Q Consensus 1146 D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~L 1225 (1827)
|.|+-+|...+-+++---.-+|. ..-+.++|+.-+.- .|++.|++|+-+||-|.-.. ++.++..+++|
T Consensus 530 dkdpilR~~Gm~t~alAy~GTgn--nkair~lLh~aVsD-~nDDVrRaAVialGFVl~~d---------p~~~~s~V~lL 597 (929)
T KOG2062|consen 530 DKDPILRYGGMYTLALAYVGTGN--NKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRD---------PEQLPSTVSLL 597 (929)
T ss_pred CCchhhhhhhHHHHHHHHhccCc--hhhHHHhhcccccc-cchHHHHHHHHHheeeEecC---------hhhchHHHHHH
Confidence 67887777766665543222222 12344444443322 35667999999999776432 34455555666
Q ss_pred cch-hHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhh
Q psy14676 1226 RKN-QRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQ 1304 (1827)
Q Consensus 1226 rk~-~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lge 1304 (1827)
.++ |..+|..++-||+-.+...|. ...+.-|-++.+|..--||+.++-.++-+.-.+....
T Consensus 598 ses~N~HVRyGaA~ALGIaCAGtG~-------~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~----------- 659 (929)
T KOG2062|consen 598 SESYNPHVRYGAAMALGIACAGTGL-------KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQL----------- 659 (929)
T ss_pred hhhcChhhhhhHHHHHhhhhcCCCc-------HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhccccc-----------
Confidence 655 689999999999977665543 2344455678888888899999988876655432211
Q ss_pred cccccCCCchhhHHHHHHHhcCCCCHh--HHHHHHHH
Q psy14676 1305 IGRHTDLTSVADLKQVILNAFTPTSEE--VKSAASYT 1339 (1827)
Q Consensus 1305 iG~~~~~~~~~~l~~~~l~~~~~~s~e--Vr~aAa~a 1339 (1827)
+ +....+...+.+...+..++ +|.-|..|
T Consensus 660 ----~--pkv~~frk~l~kvI~dKhEd~~aK~GAilA 690 (929)
T KOG2062|consen 660 ----C--PKVNGFRKQLEKVINDKHEDGMAKFGAILA 690 (929)
T ss_pred ----C--chHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 1 11245667777777777776 44444333
|
|
| >KOG0803|consensus | Back alignment and domain information |
|---|
Probab=83.32 E-value=32 Score=48.92 Aligned_cols=242 Identities=13% Similarity=0.090 Sum_probs=136.2
Q ss_pred HHHhhhhccccchhhHHHHHHhhhcccCC-C---CchHHHH----HHhccCChhhHHHHHHHHHHHHHhccccccccccc
Q psy14676 1004 QLFLHCECQEEGTRNVVAECLGKLTLIDP-S---NLLPRLQ----ESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEE 1075 (1827)
Q Consensus 1004 ~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~-~---~llP~L~----~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~ 1075 (1827)
.+++.+...++-++..|..+|+++....- + .++|... +...+.+..+|..+...+.-+.+..+..+.||
T Consensus 45 ~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~--- 121 (1312)
T KOG0803|consen 45 IIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPF--- 121 (1312)
T ss_pred HHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHH---
Confidence 33444445566667777788888765421 1 2455333 44477889999999999998889999999999
Q ss_pred hhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCC-CCCCCCcchhHHHHHHHHHHHHhhcCCC------
Q psy14676 1076 TSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLT-SPSSYDFAPFTSDIYQCTLVRLKAADID------ 1148 (1827)
Q Consensus 1076 ~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~-~~~~~~~~~~l~~l~~~ll~~L~~~D~d------ 1148 (1827)
+..++|...-+..|.++.|+..|...+..... +.. .+.-..+.+.+-.+...++-.....+-+
T Consensus 122 -------LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~---~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s 191 (1312)
T KOG0803|consen 122 -------LKSLIPPWLGGQFDLDYPVSEAAKASFKDGFA---EEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLS 191 (1312)
T ss_pred -------HHhhhhhhhheecccchHHHHHHHHHHHhhcC---hhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcc
Confidence 99999999999999999999988877665442 100 0000011111222222111111100000
Q ss_pred --------HHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHHHHhcCCCccccchhhhhhHhh
Q psy14676 1149 --------QEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIAASPLRIDLRPILTDGIPI 1220 (1827)
Q Consensus 1149 --------~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~ 1220 (1827)
+.|-..++-++..+....|+ +.-+...-.+++.+. . -..
T Consensus 192 ~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~-------------------~~el~~~~~~~kt~~------------s--~~~ 238 (1312)
T KOG0803|consen 192 SEELESKYQRVISSSLLLLLKLFKITGD-------------------EEELHSLSEKEKTFL------------S--SEK 238 (1312)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHhCc-------------------hHhhhhhhhhhhhhh------------h--HHH
Confidence 01111111111111111111 111110000111111 0 123
Q ss_pred hhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCc
Q psy14676 1221 LGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNA 1292 (1827)
Q Consensus 1221 L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~ 1292 (1827)
+-.++.....++|.+.++.+..++++....+-+.-...+-+.+...+.+.| ++....|+.+.......|+.
T Consensus 239 fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~p~~ 309 (1312)
T KOG0803|consen 239 FWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSLPDE 309 (1312)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccccccc-cccHHHHHHHHHHhhhhhHH
Confidence 444555566789999999999999987665444334455555667777888 99999999888666666543
|
|
| >PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] | Back alignment and domain information |
|---|
Probab=83.29 E-value=6.8 Score=42.74 Aligned_cols=99 Identities=16% Similarity=0.247 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHHHHHhhchhH-HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhccc
Q psy14676 92 RQAVRKRTIVALSHLVMSCNLQL-YTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSRE 170 (1827)
Q Consensus 92 ~~~VRk~Ai~aL~~l~~~~~~~~-~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~ 170 (1827)
-..+||.|..|+..+...|.... +..+++.+..+|.. ..+++..+...+..++...|..+.++++.+++-+-..++.
T Consensus 40 GLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D--~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~ 117 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD--EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSK 117 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS---HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH-
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC--cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhc
Confidence 35899999999999999887653 56778899999865 6889999999999999999999999999999988777641
Q ss_pred ------------CchHHHHHHHHHHHHHHHhCCC
Q psy14676 171 ------------EDDELREFCLQACEAFVQRCPK 192 (1827)
Q Consensus 171 ------------~~delRe~al~ale~~~~~~p~ 192 (1827)
...|....++.+...+-..+|.
T Consensus 118 k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~ 151 (169)
T PF08623_consen 118 KLKENAVKQEIEKQQELIRSVLRAVKALNSKIPG 151 (169)
T ss_dssp ---TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS
T ss_pred cCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 2345555777777777666654
|
; PDB: 4A0C_A 1U6G_C. |
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=82.62 E-value=1.4e+02 Score=37.39 Aligned_cols=213 Identities=14% Similarity=0.117 Sum_probs=98.2
Q ss_pred chhHHHHHHHHHHHHHHHHhCCCCcChHh----HHHHHHHhhhhcCC-------CChhHHHHHHHHHHHHHHhCCCccch
Q psy14676 1227 KNQRALKLSTLLLLDTLLVNYPSAISTEM----LNKVTVELAPLVSE-------SDLHIAQLTLTLLTSIAKIQPNALVE 1295 (1827)
Q Consensus 1227 k~~r~lR~~al~aL~~L~~~~~~~l~~~~----~~~ll~~L~~ll~d-------~D~~l~~~al~~L~~l~~~~~~~~~~ 1295 (1827)
..+|.-|..++..|...++.+...-+... +..++..+.+=+.. .|..+...|+.+|+.+.-. |
T Consensus 4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~-~----- 77 (372)
T PF12231_consen 4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYH-P----- 77 (372)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHcc-H-----
Confidence 34566677778887777776543322222 22333333332222 3677888889888877642 1
Q ss_pred hhHHhhhhhcccccCCCchhhHHHHHHHhcCCC--CHhHHHHHHHHHhh--hh----hhhhhhhHHHHHHhhhc---Cch
Q psy14676 1296 PAAASILPQIGRHTDLTSVADLKQVILNAFTPT--SEEVKSAASYTLGS--IA----VGNLQQYVPFVLKEIEN---QPK 1364 (1827)
Q Consensus 1296 ~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~--s~eVr~aAa~aLG~--i~----~~~l~~~LP~Il~~i~~---~~~ 1364 (1827)
++...++.....-++...+..+.++ +..+-..+..-|.. .+ ..+...-+-..+..+.+ +..
T Consensus 78 --------~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~s 149 (372)
T PF12231_consen 78 --------EIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKS 149 (372)
T ss_pred --------HHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchh
Confidence 2222221112123556666666543 33444444444432 11 11222223333333433 112
Q ss_pred hhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhc--cCCCc-chHHHHHhhhc
Q psy14676 1365 RQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTL--IDPSN-LLPRLQESLKS 1441 (1827)
Q Consensus 1365 ~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~--~~p~~-~lP~L~~~l~~ 1441 (1827)
...--+.+++-++.+. +..+...+..=++.++..+-+....+|..| ..+|..+. +.|+. +...+.+.++.
T Consensus 150 i~~erL~i~~~ll~q~------p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a-~~l~~~~~~~l~~~~~~s~~~~~~~~~ 222 (372)
T PF12231_consen 150 IISERLNIYKRLLSQF------PQQMIKHADIWFPILFPDLLSSAKDIRTKA-ISLLLEAKKCLGPNKELSKSVLEDLQR 222 (372)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhcchHHHHHH-HHHHHHHHHHhChhHHHHHHHHHHhcc
Confidence 2333456666666532 344444433223555555445566688874 44444443 23332 22333333332
Q ss_pred CCH--HHHHHHHHHHHHHhhh
Q psy14676 1442 NSA--LMRTTVLTAVKFTISD 1460 (1827)
Q Consensus 1442 ~~~--~~R~t~l~Alk~~~~~ 1460 (1827)
... ..-.-...-+++++.+
T Consensus 223 ~~~~~~~~~~~~~~L~~mi~~ 243 (372)
T PF12231_consen 223 SLENGKLIQLYCERLKEMIKS 243 (372)
T ss_pred ccccccHHHHHHHHHHHHHhC
Confidence 211 3334445556666655
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal | Back alignment and domain information |
|---|
Probab=82.23 E-value=80 Score=37.38 Aligned_cols=139 Identities=16% Similarity=0.096 Sum_probs=83.3
Q ss_pred HHHHHHHhhhhcCCc----hhHHHHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHHH-HHHHHHHHHhhhcCCCCChhH
Q psy14676 1395 PAIWAQLFLHCECQE----EGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRT-TVLTAVKFTISDQMTSSDKDF 1469 (1827)
Q Consensus 1395 ~~i~~~L~~~~~~~~----e~vR~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~-t~l~Alk~~~~~~~~~~d~~l 1469 (1827)
-..+|.++.+++++. ...-..+|+.|+.++...+..=+-++...+.+..+..+. -+.++++++-..
T Consensus 110 la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~--------- 180 (262)
T PF14225_consen 110 LALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQVVSYLREA--------- 180 (262)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH---------
Confidence 445677777776555 123345778999998654433333333333222221111 122222222210
Q ss_pred HHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhh--hHHHHHHHHHhhhccccc
Q psy14676 1470 RFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEF--QVETIVDALCSNMVSDKE 1547 (1827)
Q Consensus 1470 ~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~--~~~~~v~~l~~~l~~~~~ 1547 (1827)
+-|++...++..++.++..+.+.+|....+.|-.+.+.++-. ...+++.|+++-+.++..
T Consensus 181 ------------------f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~ 242 (262)
T PF14225_consen 181 ------------------FFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLW 242 (262)
T ss_pred ------------------hCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccH
Confidence 112233467788899999999999999999999999887633 567789999988876433
Q ss_pred ccccCCccchhHHHHHHHhhhhcc
Q psy14676 1548 QLRDISSIGLKTVISVVYCLGDRN 1571 (1827)
Q Consensus 1548 ~~~~~~~~~vRr~Al~~l~s~a~~ 1571 (1827)
.-|+..|..+...
T Consensus 243 -----------~eAL~VLd~~v~~ 255 (262)
T PF14225_consen 243 -----------MEALEVLDEIVTR 255 (262)
T ss_pred -----------HHHHHHHHHHHhh
Confidence 4566666665543
|
|
| >KOG1949|consensus | Back alignment and domain information |
|---|
Probab=81.77 E-value=16 Score=47.04 Aligned_cols=141 Identities=13% Similarity=0.142 Sum_probs=100.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHH----HHhhhcCCCCHHHHHHHHH----HHHHHHH
Q psy14676 38 ITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILT----ALLPQLSSPRQAVRKRTIV----ALSHLVM 108 (1827)
Q Consensus 38 L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~----~ll~~L~~~~~~VRk~Ai~----aL~~l~~ 108 (1827)
.-|.|..+++- .+..||..|...+-++..--+|.... ..+.+++ .+...|.|+-|.||..|+. +++.|.+
T Consensus 175 ~~p~l~R~L~a-~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe 253 (1005)
T KOG1949|consen 175 YKPILWRGLKA-RNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWE 253 (1005)
T ss_pred HhHHHHHhhcc-CchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 33445556653 47889999988887776666665522 1223333 3455578999999988865 5667778
Q ss_pred hhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHH
Q psy14676 109 SCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQ 181 (1827)
Q Consensus 109 ~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ 181 (1827)
.+++..+.+++..+...++.+...++|-..+.++..++..-. --+-+..++|.+-..+.|..+.+|-.+.+
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~--sh~~le~~Lpal~~~l~D~se~VRvA~vd 324 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL--SHPLLEQLLPALRYSLHDNSEKVRVAFVD 324 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc--chhHHHHHHHhcchhhhccchhHHHHHHH
Confidence 899999999999999999887778999999999999875322 23456778887666677888888855444
|
|
| >cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
Probab=80.94 E-value=12 Score=46.19 Aligned_cols=125 Identities=10% Similarity=0.180 Sum_probs=85.1
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCC-----C-CHHHHHHHHHHHHHHHHHhchh
Q psy14676 79 VILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTN-----K-STSTNRTYIQCFAAICRQAGHR 152 (1827)
Q Consensus 79 ~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~-----~-~~~~r~~ai~~l~~la~~~~~~ 152 (1827)
.....+...+.+.+...|..|...|.. +..+.++++.++..+.+. . +...-...+.++.++...-.-.
T Consensus 178 ~yf~~It~a~~~~~~~~r~~aL~sL~t------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~ 251 (343)
T cd08050 178 LYFEEITEALVGSNEEKRREALQSLRT------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLH 251 (343)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcc------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 344444445555677778776666543 555667777777776321 1 3455666677777777666678
Q ss_pred hHHhHHHHHHHHHhhcc----------cCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHh
Q psy14676 153 FAEHIERVMPLILKYSR----------EEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYI 209 (1827)
Q Consensus 153 ~~p~l~~i~p~l~~~~~----------~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l 209 (1827)
+.||+..++|.++.++- +++-.+|++|...+..++++++..-....+.|+..+.+.+
T Consensus 252 le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l 318 (343)
T cd08050 252 LEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKAL 318 (343)
T ss_pred hHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHH
Confidence 89999999999998752 2345799999999999999987754444556666666655
|
The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1827 | ||||
| 4a0c_A | 1253 | Structure Of The Cand1-Cul4b-Rbx1 Complex Length = | 1e-118 | ||
| 4a0c_A | 1253 | Structure Of The Cand1-Cul4b-Rbx1 Complex Length = | 5e-71 | ||
| 4a0c_A | 1253 | Structure Of The Cand1-Cul4b-Rbx1 Complex Length = | 2e-70 | ||
| 1u6g_C | 1230 | Crystal Structure Of The Cand1-Cul1-Roc1 Complex Le | 1e-118 | ||
| 1u6g_C | 1230 | Crystal Structure Of The Cand1-Cul1-Roc1 Complex Le | 5e-71 | ||
| 1u6g_C | 1230 | Crystal Structure Of The Cand1-Cul1-Roc1 Complex Le | 2e-70 |
| >pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 1253 | Back alignment and structure |
|
| >pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 1253 | Back alignment and structure |
|
| >pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 1253 | Back alignment and structure |
|
| >pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex Length = 1230 | Back alignment and structure |
|
| >pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex Length = 1230 | Back alignment and structure |
|
| >pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex Length = 1230 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 442 bits (1137), Expect = e-131
Identities = 426/1297 (32%), Positives = 627/1297 (48%), Gaps = 135/1297 (10%)
Query: 547 LALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNL 606
++ L E MTSSDKDFRFMATNDLM+ELQKDSIKLDDDSERKVVKM+L+LLEDKNGEVQNL
Sbjct: 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNL 67
Query: 607 AVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVN 666
AVKCLGPL + + + L + L ++ ++ L T++ + +
Sbjct: 68 AVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQL-----RDISSIGLKTVIG-ELPPAS 121
Query: 667 YPSAISTEMLNKVTVELA-PLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQV 725
SA++ + K+T L + + D+ + L ++ + Q LV SIL +
Sbjct: 122 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLV-NFHPSILTCL 180
Query: 726 LQIAKSP--LLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHS 783
L SP ++ + ++ S L LL+ L + +
Sbjct: 181 LPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL-IEHLLSELSKN--DSMSTTRTYIQC 237
Query: 784 LAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSH 843
+A + ++ +K + D+ + I A V C ++
Sbjct: 238 IAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVY------ 291
Query: 844 LVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLIL 903
+ +I+ L+ LT + + + + + ++
Sbjct: 292 -------PHVSTIINICLKYLTYDPNYNYD-----DEDEDENAMDADGGDDDDQGSDDEY 339
Query: 904 KYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTS 963
+ ++R + +A V + + +++ +++ F
Sbjct: 340 SDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVS------------PALISRFKERE 387
Query: 964 EEVKSAASYTLGSIAEIISWQS----------TSTSGVAQLQQFVPAIWAQLFLHCECQE 1013
E VK+ + S+ + + + LQ VP I L + +
Sbjct: 388 ENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKS 447
Query: 1014 EGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHN 1073
TR L +L + P L + + + S+ + + N
Sbjct: 448 VKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCN 507
Query: 1074 EETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSD 1133
+ L+ PV+A VGD FYKIT+EALLV QQ VKVIRPL PSS+D P+ D
Sbjct: 508 HSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKD 567
Query: 1134 IYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLT 1193
++ CT+ RLKAADIDQEVKERAISCMGQIICNLGD L S+LP L I L+RL+NEITRLT
Sbjct: 568 LFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLT 627
Query: 1194 TVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAIST 1253
TVKALT IA SPL+IDLRP+L +G+PIL SFLRKNQRALKL TL LD L+ NY +++
Sbjct: 628 TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTA 687
Query: 1254 EMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQI-------- 1305
M++ V EL PL+SESD+H++Q+ ++ LT++AK+ P+ + + SIL ++
Sbjct: 688 AMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPS-SLSKISGSILNELIGLVRSPL 746
Query: 1306 -----------------GRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNL 1348
T+ DL +++ S + SY + V L
Sbjct: 747 LQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAAL 806
Query: 1349 QQYVPFVLKEIENQPKRQYLLLHSLKEI--ISWQSTSTSGVAQLQQFVPAIWAQLFLHCE 1406
+ P + Q + S I ++ S G + + +
Sbjct: 807 TRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFS 866
Query: 1407 CQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSD 1466
E ++ + LG +++ + LP + + + S
Sbjct: 867 SPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQP----------------------- 903
Query: 1467 KDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKV 1526
+++ + L + S+ + +LL+ E +N+ +CLG L
Sbjct: 904 -KRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLT--- 959
Query: 1527 KEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVIS----------------VVYCLGDR 1570
ET++ L ++S R +K IS + L D
Sbjct: 960 -LIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLED- 1017
Query: 1571 NSSSNMKIDTLAFTHTLLTTHPPAVFHPHIHILLPPVI----IIKTLIREVEMGPFKHTV 1626
N++ L ++ P + + +LP + + K LIREVEMGPFKHTV
Sbjct: 1018 -PDLNVRRVALVTFNSAAHNKPSLI-RDLLDTVLPHLYNETKVRKELIREVEMGPFKHTV 1075
Query: 1627 DDGLDIRKAAFECMYTLLDTCLDRVDMFEFLNHLESGLRDHYDIKMLTYLMLARLAQMTP 1686
DDGLDIRKAAFECMYTLLD+CLDR+D+FEFLNH+E GL+DHYDIKMLT+LML RL+ + P
Sbjct: 1076 DDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDHYDIKMLTFLMLVRLSTLCP 1135
Query: 1687 AALLQRLERIVEPLRNTVTLKVKANSVKQEYEKQDELKRSAMRAVAALLTIQDADKNPAL 1746
+A+LQRL+R+VEPLR T T KVKANSVKQE+EKQDELKRSAMRAVAALLTI +A+K+P +
Sbjct: 1136 SAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLM 1195
Query: 1747 NDFVATIKNSPELQTIFDSMQKDSSLSNQQDPHMMDM 1783
++F + I ++PEL IF+S+QKDSS +N + MD
Sbjct: 1196 SEFQSQISSNPELAAIFESIQKDSSSTNLE---SMDT 1229
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 405 bits (1041), Expect = e-118
Identities = 390/1109 (35%), Positives = 577/1109 (52%), Gaps = 154/1109 (13%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGS--NALAANVCRRITGKLSTAIEKQEDVSVQLEA 58
M+SDKEQLRDISSIGLKTVI ELP S +ALAANVC++ITG+L++AI KQEDVSVQLEA
Sbjct: 95 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEA 154
Query: 59 LDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKL 118
LDI++D+LSR G LL +FH ILT LLPQL+SPR AVRKRTI+AL HLVMSC ++ L
Sbjct: 155 LDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL 214
Query: 119 IDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREF 178
I+ LL L+ N S ST RTYIQC AAI RQAGHR E++E+++PL++K+ +DDELRE+
Sbjct: 215 IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREY 274
Query: 179 CLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEE 238
C+QA E+FV+RCPKE+ PH+ +I +CL Y+TYDPNYNY+DE+E +
Sbjct: 275 CIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMD-------ADG 327
Query: 239 DGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKERE 298
+D+ D+EYSDDDDMSWKVRRAAAKCL+A+++TR +++ + Y+ VSP LI+RFKERE
Sbjct: 328 GDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKERE 387
Query: 299 ENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREK 358
ENVK+D+FHAY++LLK TR DP+ M+Q ++PL +L +QVP++VKAL Q++EK
Sbjct: 388 ENVKADVFHAYLSLLKQTRPVQ-SWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEK 446
Query: 359 SIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEE 418
S++TRQ C +L ELV LPG L +P L+P +
Sbjct: 447 SVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLN--------------------- 485
Query: 419 DGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATR-RDLIGDMYRLVSPPLIARFKER 477
D S ++ A CL I+ + + + PP++A +
Sbjct: 486 --------------DKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDP 531
Query: 478 EENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLRE 537
+ S+ L+K R + D ++ + + + + +++E
Sbjct: 532 FYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQ----EVKE 587
Query: 538 KSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLE 597
++I + L + + S DL + LQ +L ++ R
Sbjct: 588 RAISCMGQIICNLGDNLGS-----------DLPNTLQIFLERLKNEITRL---------- 626
Query: 598 DKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTL 657
KALT IA SPL+IDLRP+L +G+PIL SFLRKNQRALKL TL
Sbjct: 627 ---------------TTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTL 671
Query: 658 LLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPA 717
LD L+ NY +++ M++ V EL PL+SESD+H++Q+ ++ LT++AK+ P+ +
Sbjct: 672 SALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPS-SLSKI 730
Query: 718 AASILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTG--TA 775
+ SIL +++ + +SPLLQG AL++ML+FF++LV+ L + +LL ML PV +
Sbjct: 731 SGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTAL 790
Query: 776 LHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVAL------SHLV 829
HKQ+++S+AKCVAAL +E VV +F++++K ++ + L H+
Sbjct: 791 THKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHID 850
Query: 830 MSCNLQLTIVALSHLVMSCNL----------QLYTKLIDFLLEGLTTNKSTSTNRTYIQC 879
+S L+L V L + + L + ++ R Y+
Sbjct: 851 LSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLL 910
Query: 880 FA---AICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHI 936
+ I + ++E + L+LK+ ++ R + P+ + P +
Sbjct: 911 HSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRL 970
Query: 937 QSIGRHTD----LTSVADLKQVI------------------LNAFTPTSEEVKSAASYTL 974
+ + V +K I L V+ A T
Sbjct: 971 KGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTF 1030
Query: 975 GSIAEIISWQSTSTSGVAQLQQFVPAIWAQL--------------FLHCECQEEGTRNVV 1020
S A L +P ++ + F H R
Sbjct: 1031 NSAAHNKPSLIRD-----LLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAA 1085
Query: 1021 AECLGKL-----TLIDPSNLLPRLQESLK 1044
EC+ L +D L +++ LK
Sbjct: 1086 FECMYTLLDSCLDRLDIFEFLNHVEDGLK 1114
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 81.7 bits (200), Expect = 2e-15
Identities = 157/1223 (12%), Positives = 366/1223 (29%), Gaps = 122/1223 (9%)
Query: 254 DDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALL 313
+D + +V+ A KCL L+ + ++ + K + L
Sbjct: 58 EDKNGEVQNLAVKCLGP-------LVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGL 110
Query: 314 KGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLREL 373
K P S + L A+ Q + + + + L ++ ++
Sbjct: 111 KTVIGELPPASSGSALAANVCKKI------TGRLTSAIAKQ---EDVSVQLEALDIMADM 161
Query: 374 VQTLPGCLAPSLPALIPDVTSVAEWDEEE----------GLGGEGGGEGMDTEEEDGEDE 423
+ G L P+++ + L G E E
Sbjct: 162 LSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSE 221
Query: 424 GEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKS 483
++ S R +C+ AI IG+ + P ++ ++ ++
Sbjct: 222 LSKND--------SMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELRE 273
Query: 484 DIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTR 543
A F P ++ V +++ L
Sbjct: 274 YCIQA----------FESFVRRCPKEVYPH----------VSTIINICLKYLTYDPNYNY 313
Query: 544 QDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEV 603
D + D + D DDD KV + + L V
Sbjct: 314 DDEDEDENAMDADGGDD---------DDQGSDDEYSDDDDMSWKVRRAAAKCL----DAV 360
Query: 604 QNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTL 663
+ + L +K ++ S + + D S L++ R ++
Sbjct: 361 VSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQT-RPVQSWLCDPDAME 419
Query: 664 LVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILP 723
P + + + L + E + Q +LT + + P AL ++P
Sbjct: 420 QGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGAL-TQHIPVLVP 478
Query: 724 QVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHS 783
++ L + +S L+ L + ++ + + ++
Sbjct: 479 GIIF-----SLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPV---VACVGD 530
Query: 784 LAKCVAALAITVQREALPVVEKFLKELKTNKDD-AHQVTIVALSHL----VMSCNLQLTI 838
+ + A+ V ++ + V+ + + + + L + + I
Sbjct: 531 PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAI 590
Query: 839 VALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHR-FAEHIER 897
+ ++ + L + L + L L K+ T T ++ I +
Sbjct: 591 SCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGE 650
Query: 898 VMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQS--IGRHTDLTSVAD--LKQ 953
+P++ + R+ L+ L A + ++ +T + + L S +D + Q
Sbjct: 651 GVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQ 710
Query: 954 VILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQE 1013
+ ++ T ++ S+ S GSI + S + + L +
Sbjct: 711 MAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGT-NN 769
Query: 1014 EGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHN 1073
G +++ G + + + S+ A + V D+ N
Sbjct: 770 LGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSR 829
Query: 1074 EETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSD 1133
S L ++ + L + ++ S + +
Sbjct: 830 STDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLP 889
Query: 1134 IYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRN--EITR 1191
Y +++ + ++ S I LK + +LL E TR
Sbjct: 890 EYLPFVLQEITSQPKRQY-LLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTR 948
Query: 1192 LTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAI 1251
+ L K+ +P L +L + S + + + ++P I
Sbjct: 949 NVVAECLGKLTLI--------DPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPI 1000
Query: 1252 STEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDL 1311
+L + + + DL++ ++ L S A +P+ L+ ++LP + T +
Sbjct: 1001 D-PLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPS-LIRDLLDTVLPHLYNETKV 1058
Query: 1312 TSVADLKQVILNAFTPT---SEEVKSAASYTLGSIAVG-----NLQQYVPFVLKEIENQP 1363
+++V + F T +++ AA + ++ ++ +++ V +++
Sbjct: 1059 RK-ELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDHY 1117
Query: 1364 KRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLH---------CECQEEGTRN 1414
+ L L + + ++ + +L + V + A E Q+E R+
Sbjct: 1118 DIKMLTFLMLVRLSTLCPSAV--LQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRS 1175
Query: 1415 VVAECLGKLTLIDPSNLLPRLQE 1437
+ + L I + P + E
Sbjct: 1176 AM-RAVAALLTIPEAEKSPLMSE 1197
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 3e-12
Identities = 111/722 (15%), Positives = 205/722 (28%), Gaps = 236/722 (32%)
Query: 925 VQRCPKEITPH-IQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISW 983
Q K+I + + D V D+ + IL + EE+ II
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL-----SKEEID-----------HIIM- 56
Query: 984 QSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESL 1043
+ SG +L W QEE + V E L + L+ ++
Sbjct: 57 SKDAVSGTLRL------FW----TLLSKQEEMVQKFVEEVLRI----NYKFLMSPIKTEQ 102
Query: 1044 KSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKIT- 1102
+ S + R I QR+ ++N N+ + + Y ++
Sbjct: 103 RQPSMMTR---------MYIEQRDRLYNDNQ-----------VFAK---------YNVSR 133
Query: 1103 AEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIY-------QCTLVRLKAADIDQEVKERA 1155
+ L L+Q + +RP A I + +
Sbjct: 134 LQPYLKLRQALLELRP---------AKNVL-IDGVLGSGKTW-VALDVCLSYKVQ----- 177
Query: 1156 ISCM-GQII-CNLGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIAASPLRIDLRPI 1213
M +I NL + E +L+ L+ + ++ T + I LR
Sbjct: 178 -CKMDFKIFWLNLKNCNSPET------VLEMLQKLLYQID--PNWTSRSDHSSNIKLR-- 226
Query: 1214 LTDGIPILGSFLRKNQRALKLSTLLLLD----------------TLLVNYPSAISTEMLN 1257
+ L L+ + LL+L LL ++ +
Sbjct: 227 IHSIQAELRRLLKSKPYE---NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 1258 KVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPA-AASILPQ----IG------ 1306
T + L S +LL +P L P + P+ I
Sbjct: 284 ATTTHI-SLDHHSMTLTPDEVKSLLLKYLDCRPQDL--PREVLTTNPRRLSIIAESIRDG 340
Query: 1307 -------RHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSI---------AV----- 1345
+H + + + + LN P E + + S+ +
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEP--AEYR--KMFDRLSVFPPSAHIPTILLSLIW 396
Query: 1346 GNLQQYVP-FVLKE------IENQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIW 1398
++ + V+ + +E QPK + + S+
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI------------------------- 431
Query: 1399 AQLFLHCECQEEGT--RNVVAECLGKLTLIDPSNLLPRLQES---------LKSNSALMR 1447
L L + + E R++V + D +L+P + LK+ R
Sbjct: 432 -YLELKVKLENEYALHRSIV-DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 1448 TTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDK 1507
T+ V DFRF+ QK I+ D + +L L+
Sbjct: 490 MTLFRMVFL-----------DFRFLE--------QK--IRH-DSTAWNASGSILNTLQQL 527
Query: 1508 NGEVQNLAVKCLGP--LVNKVKEF--QVETIVDALCSNMVSDKEQLRDISSIGLKTVISV 1563
+ LVN + +F ++E N++ K D+ I L
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIEE-------NLICSKY--TDLLRIALMAEDEA 578
Query: 1564 VY 1565
++
Sbjct: 579 IF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 6e-09
Identities = 91/651 (13%), Positives = 190/651 (29%), Gaps = 194/651 (29%)
Query: 797 REALPV-VEKFLKELKTN--KDDAHQV-TIVALSHLVMSCNLQLTIVALSHLVMSCNLQL 852
++ L V + F+ +D + + + H++MS + + L ++S ++
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 853 YTKLI--------DFLLEGLTT-NKSTSTNRT-YIQCFAAICRQAGHRFAEHIERVMPLI 902
K + FL+ + T + S YI+ + + +
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ------------RDRLYNDNQVF 126
Query: 903 LKY--SREED-DELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAF 959
KY SR + +LR+ L E+ P +++ L S K +
Sbjct: 127 AKYNVSRLQPYLKLRQ-ALL-----------ELRPA-KNVLIDGVLGSG---KTW-VALD 169
Query: 960 TPTSEEVKSAASYTLGSIAEIISW-----QSTSTSGVAQLQ----QFVPAIWAQ------ 1004
S +V+ + I W ++ + + LQ Q P ++
Sbjct: 170 VCLSYKVQCKMDFK-------IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 1005 LFLHCECQEEGTRNVVAE-----CLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQT 1059
+ L + R ++ CL L L++ N + + + ++ TT T
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCL--LVLLNVQN--AKAWNAFNLSCKILLTTRFKQVT 278
Query: 1060 FNVIIQRNDIH---NHN------EETSFIYSFY----YFLL-------SP-VIASVG--- 1095
+ + H +H+ +E + Y L +P ++ +
Sbjct: 279 -DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 1096 -------DNFYKITAEALL-VLQQFVKVIRPLTSPSSY-DFAPFTSD--IYQCTLVRLKA 1144
DN+ + + L +++ + V+ P + + F I L +
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 1145 ADIDQEVKERAISCMGQIICNL-GDYLKSELPVCLPILLDRLRNE-------ITRLTTVK 1196
I +V + +P L +L NE + K
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 1197 ALTKIAASPLRID----------------------LRPILTDGIPILGSFLRKNQRALKL 1234
P +D R + D FL ++ ++
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD----F-RFL---EQKIRH 509
Query: 1235 STLL------LLDTL--LVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIA 1286
+ +L+TL L Y I ++D +L +L +
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYIC----------------DNDPKYERLVNAILDFLP 553
Query: 1287 KIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAAS 1337
KI+ N + ++TDL ++ L + A
Sbjct: 554 KIEENLI-----------CSKYTDLL------RIAL--MAEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 1e-08
Identities = 84/546 (15%), Positives = 153/546 (28%), Gaps = 193/546 (35%)
Query: 1302 LPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIEN 1361
+ D V D+ + IL + EE+ I
Sbjct: 26 EDAFVDNFDCKDVQDMPKSIL-----SKEEID------------------------HIIM 56
Query: 1362 QP---KRQYLLLHSLKEIISWQSTSTSGVAQLQQFV--------PAIWAQLFLHCEC-QE 1409
L +L + +Q+FV + + + E Q
Sbjct: 57 SKDAVSGTLRLFWTLL---------SKQEEMVQKFVEEVLRINYKFLMSPI--KTEQRQP 105
Query: 1410 EGTRNVVAECLGKL----TLIDPSNLLPRLQESLKSNSALMRT----------------T 1449
+ E +L + N+ RLQ LK AL+ T
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 1450 VLTAVKFTISDQMTSSDKDFR-F-------MATNDLMSELQK----------------DS 1485
+ DF+ F + ++ LQK +
Sbjct: 165 WVALD--VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 1486 IKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSD 1545
IKL S + L RLL+ K E CL L ++ N V +
Sbjct: 223 IKLRIHSIQAE---LRRLLKSKPYE------NCL--L-----------VLL----N-VQN 255
Query: 1546 KEQLR--DISSIGLKTVISVVYCLGDRNSSSNMKIDTLAFTHTLLTTHPPAVFHPH--IH 1601
+ ++S K +++ R + TH L H P
Sbjct: 256 AKAWNAFNLSC---KILLTT------RFKQVTDFLSAATTTHISLD-HHSMTLTPDEVKS 305
Query: 1602 ILLPPV-IIIKTLIREVEMG-PFKHTVDDGLDIRKAAFECMYTLLDTCLDRVDMFEFLNH 1659
+LL + + L REV P + ++ I A D + ++
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSI-----I--AES---------IRDGLATWDNW-- 347
Query: 1660 LESGLRDHYDIKMLTYLMLARLAQMTPAALLQRLERI-VEPLRNTVTLKVKA----NSVK 1714
H + LT ++ + L + PA + +R+ V P + + + + +K
Sbjct: 348 ------KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 1715 QEYEK-QDELKRSAMRAVAALLTIQDADKNPALNDFVATIKNSPELQTIFDSMQKDSSLS 1773
+ ++L + ++ +K P + +I P + + K L
Sbjct: 402 SDVMVVVNKLHKYSL-----------VEKQP--KESTISI---PSIY--LELKVK---LE 440
Query: 1774 NQQDPH 1779
N+ H
Sbjct: 441 NEYALH 446
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 1e-06
Identities = 86/671 (12%), Positives = 178/671 (26%), Gaps = 209/671 (31%)
Query: 155 EHIERVMPLILKYSREEDD-------ELREFCLQACEAFVQRCPKEITPHIQSITELCLT 207
+ ++ + IL E D L + +E+ +Q E L
Sbjct: 36 KDVQDMPKSILS-KEEIDHIIMSKDAVSGTLRLFWT---LLSKQEEM---VQKFVEEVL- 87
Query: 208 YITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMS-WKVRRAAAK 266
NY + L E + D Y+D+ + + V R
Sbjct: 88 ----RINYKF------LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR---- 133
Query: 267 CLEAIIATRRDLIGDMYRLVSPPLI-----------------ARFKEREENVKSDIFHAY 309
L+ + R+ L L + + + + IF +
Sbjct: 134 -LQPYLKLRQAL----LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF--W 186
Query: 310 MALLKGTRTFSPLTPSDP--NQMDQEDSPLCLLSTQVPSLVKALQCQLREK-SIRTRQDC 366
+ L + L Q+D + S+ + + ++Q +LR + ++C
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 367 LALLR-----ELVQTL-PGC--LAPSLPALIPDVT----SVAEWDEEEGLGGEGGGEGMD 414
L +L + C L +T V + L
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKIL----------LTTRFKQVT-----DFLSAATTTHISL 291
Query: 415 TEEEDG--EDEGED------DNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLV 466
DE + D D + R ++ +I + R
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQD-------LPREVLTTNPRRLS----IIAESIR-- 338
Query: 467 SPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQM--D----QEDSPVCLL 520
+N K +++ + + L P++ +M +
Sbjct: 339 ------DGLATWDNWKHVNCDKLTTIIE--SSLNVLEPAEYRKMFDRLSVFPPSAH---- 386
Query: 521 STQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDS-IK 579
+P+++ L+L+ + SD ++++L K S ++
Sbjct: 387 ---IPTIL------------------LSLIWFDVIKSDVM-------VVVNKLHKYSLVE 418
Query: 580 LDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLG--PLFKALTKIAASPLRID-------- 629
+ + L+ K L + + K P +D
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 630 --------------LRPILTDGIPILGSFLRKNQRALKLSTLL------LLDTL--LVNY 667
R + D FL ++ ++ + +L+TL L Y
Sbjct: 479 HHLKNIEHPERMTLFRMVFLD----F-RFL---EQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 668 PSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQ 727
I ++D +L +L + KI+ N L+ +L L
Sbjct: 531 KPYI----------------CDNDPKYERLVNAILDFLPKIEEN-LICSKYTDLLRIALM 573
Query: 728 IAKSPLLQGAA 738
+ + A
Sbjct: 574 AEDEAIFEEAH 584
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 2e-06
Identities = 80/531 (15%), Positives = 145/531 (27%), Gaps = 174/531 (32%)
Query: 6 EQLRDISSIGL-------KTVISELPLGSNALAANVCR--RITGKLSTAI------EKQE 50
+LR ++ + KT +A +VC ++ K+ I
Sbjct: 145 LELRPAKNVLIDGVLGSGKTW----------VALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 51 DVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRT---IVALSHLV 107
+V L++L LL + P++ S ++ R L L+
Sbjct: 195 PETV----LEMLQKLLYQID---PNWT---------SRSDHSSNIKLRIHSIQAELRRLL 238
Query: 108 MS-----CNLQL----YTKLID-F-----LLEGLTTNKSTSTNRTYIQCFAAICRQAGHR 152
S C L L K + F +L LTT T+ H
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKIL--LTTRFKQVTD-------FLSAATTTHI 289
Query: 153 FAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKE---ITP-HIQSITELCLTY 208
+H + DE++ L+ + Q P+E P + I E
Sbjct: 290 SLDHHSMTL---------TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 209 I-TYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKC 267
+ T+D N+ + + K+
Sbjct: 341 LATWD-NWKHVN-------------------------------------CDKLTTIIESS 362
Query: 268 LEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDP 327
L + M+ +S + F + I ++L+ + + SD
Sbjct: 363 LNVL---EPAEYRKMFDRLS---V--F---PPSAH--IPTILLSLI-----WFDVIKSDV 404
Query: 328 NQMDQEDSPLCLLSTQVPSLVKAL-QCQLREKSIRTRQDCLALLRELVQ--TLPGCLAPS 384
+ + L+ Q ++ L K ++ AL R +V +P
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELK--VKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 385 LPALIPDVTSVAEWDEEEGLGGEGG------GEGMDTEEEDGEDEGEDDNEYSDDDDMSW 438
LIP D G + E + D +
Sbjct: 463 --DLIPP-----YLD---------QYFYSHIGHHLKNIEHPERMT-LFRMVFLDFRFLEQ 505
Query: 439 KVRRA--AAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFH 487
K+R A +I+ T + L Y+ P I + E + + I
Sbjct: 506 KIRHDSTAWNASGSILNTLQQL--KFYK----PYICDNDPKYERLVNAILD 550
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 69.8 bits (170), Expect = 7e-12
Identities = 96/759 (12%), Positives = 232/759 (30%), Gaps = 90/759 (11%)
Query: 48 KQEDVSVQLEALDILSDLLSRFGALLPSFHF-----VILTALLPQLSSPRQAVRKRTIVA 102
ED + A L + +L S +++ L +R +
Sbjct: 138 DSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVAC 197
Query: 103 LSHLVMSCNLQLYTKLIDFL--LEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERV 160
++ ++S L + F+ L L ++ + + + R H+ +
Sbjct: 198 VNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNI 257
Query: 161 MPLILKYSREEDDELR----EFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYN 216
+ +L+ ++++D+ + EF L E C + H+ + + + + Y
Sbjct: 258 VEYMLQRTQDQDENVALEACEFWLTLAEQ--PICKDVLVRHLPKLIPVLVNGMKYSD--- 312
Query: 217 YEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR 276
+ + DD W +R+ +A L+ + R
Sbjct: 313 -------------------IDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR 353
Query: 277 DLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKG-TRTFSPLTP----------S 325
D ++ + P L E VK A+ +G + P P S
Sbjct: 354 D---ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS 410
Query: 326 DPNQMDQ-----------EDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELV 374
D + + T + L+ L ++ + + R ++ + L
Sbjct: 411 DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLE 470
Query: 375 QTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDD 434
+ L P L ++ + + + L D + G N+
Sbjct: 471 EEACTELVPYLAYILDTLVFAFSKYQHKNL-----LILYDAIGTLADSVGHHLNKPEYIQ 525
Query: 435 DMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLK 494
+ + + +DL + L S + + ++ + L++
Sbjct: 526 ----MLMPPLIQKWNMLKDEDKDLFPLLECLSS--VATALQSGFLPYCEPVYQRCVNLVQ 579
Query: 495 GTRTFSPLTPSDPNQMDQEDSPVCLLSTQ-VPSLVKALQCQLREKSIRTRQDCLALLREL 553
T + L + P+Q + D +++ + L + L + + + R + L L+ +
Sbjct: 580 KTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNI--EQLVARSNILTLMYQC 637
Query: 554 MTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGP 613
M + R + L+ +L K + + +L L + V N A +G
Sbjct: 638 MQDKMPEVRQSSFA-LLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGE 696
Query: 614 LFKALTKIAASPLRIDLRPILTDGIPILGSFLR--KNQRALKLSTLLLLDTLLVNYPSAI 671
+ + + I+++P + + L + + L +T + + L P +
Sbjct: 697 I--------SIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEV 748
Query: 672 STEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKS 731
+ + + L + D + ++ + P+ ++ V
Sbjct: 749 APMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVI-QDFIFFCDAVASWINP 807
Query: 732 PLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPV 770
+L FK+ + ++ + P+
Sbjct: 808 KDDLRDMFCKILHGFKNQ----VGDENWRRFSDQFPLPL 842
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 69.4 bits (169), Expect = 9e-12
Identities = 90/725 (12%), Positives = 212/725 (29%), Gaps = 113/725 (15%)
Query: 519 LLSTQVPSLVKALQCQL----REKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQ 574
+ P + + + + ++ D L L L+ S D + A L +
Sbjct: 98 NIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICE 157
Query: 575 KDSIKLDDDSERK----VVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDL 630
+ LD D + ++ L+ + + ++++ AV C+ + T+ L
Sbjct: 158 DSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ--------AL 209
Query: 631 RPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSES 690
+ I L + + ++ + L LL + M N V L +
Sbjct: 210 MLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQ-RTQDQ 268
Query: 691 DLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFKSLV 750
D ++A ++A+ + + LP+++ + L+ G + +
Sbjct: 269 DENVALEACEFWLTLAE---QPICKDVLVRHLPKLIPV----LVNGMKYSDIDIIL---- 317
Query: 751 LAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKEL 810
++ T A + LA + E LP + LKEL
Sbjct: 318 ----------LKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKEL 367
Query: 811 KTNKD-DAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKS 869
+ + + I+ L + C + +LI L++ L+ K+
Sbjct: 368 LFHHEWVVKESGILVLGAIAEGCMQGMI-------------PYLPELIPHLIQCLSDKKA 414
Query: 870 TSTNRTY--IQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQR 927
+ T + +A +++ +M +LK + + ++E A +
Sbjct: 415 LVRSITCWTLSRYAHWVVSQPPD--TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE 472
Query: 928 CPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTS 987
E+ P++ I ++ AF+ + +G++A+ +
Sbjct: 473 ACTELVPYLAYI------------LDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNK 520
Query: 988 TSGVAQLQQFVPAIWAQLFLHCECQEE--GTRNVVAECLGKLTLIDPSNLLPRLQESLKS 1045
+ L + W L + + VA L L + R ++
Sbjct: 521 PEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQK 580
Query: 1046 NSALMRTTHQSNQTFNVIIQR-----------------NDIHNHNEETSFIYSFY----- 1083
A + + + +I ++ + Y
Sbjct: 581 TLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQD 640
Query: 1084 ---------YFLLSPVIASVGDNF------------YKITAEALLVLQQFVKVIRPLTSP 1122
+ LL + + + + E + V I ++
Sbjct: 641 KMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQ 700
Query: 1123 SSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILL 1182
+ P+ + + + + + + E +G++ + L +
Sbjct: 701 MGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWC 760
Query: 1183 DRLRN 1187
LRN
Sbjct: 761 TSLRN 765
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 67.5 bits (164), Expect = 4e-11
Identities = 122/935 (13%), Positives = 256/935 (27%), Gaps = 159/935 (17%)
Query: 81 LTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQ 140
L +L +L S + R + + L + V + + DF+ N S+
Sbjct: 50 LIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRAT 109
Query: 141 CFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHI-Q 199
I A ++ ++P + ED E A + + + + +
Sbjct: 110 VGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLD 169
Query: 200 SITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWK 259
+ + + S K
Sbjct: 170 RPLNIMIPKFL--------------------QFFK--------------------HSSPK 189
Query: 260 VRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTF 319
+R A C+ I +R + L A + E V+ ++ A
Sbjct: 190 IRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRA----------L 239
Query: 320 SPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQT--L 377
L + L + ++V+ + + +++ + L +
Sbjct: 240 VMLLEVRMD----------RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC 289
Query: 378 PGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMS 437
L LP LIP + + ++ + + D DD
Sbjct: 290 KDVLVRHLPKLIPVLVNGMKYSDID-------------IILLKGDVEGGSGG--DDTISD 334
Query: 438 WKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTR 497
W +R+ +A L+ + RD ++ + P L E VK A+ +G
Sbjct: 335 WNLRKCSAAALDVLANVYRD---ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCM 391
Query: 498 TFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSS 557
+ +P L+ L L +K R L
Sbjct: 392 QG--------------------MIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH-- 429
Query: 558 DKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKA 617
++S+ +K ++ LL+ + D N VQ A L +
Sbjct: 430 ----------WVVSQPPDTYLK-------PLMTELLKRILDSNKRVQEAACSAFATLEEE 472
Query: 618 LTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLL------VNYPSAI 671
+L P L + L K Q L + TL +N P I
Sbjct: 473 ACT--------ELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI 524
Query: 672 STEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEP---AAASILPQVLQI 728
M + + DL L+ + + + EP +++ + L
Sbjct: 525 QMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQ 584
Query: 729 AKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCV 788
A Q + + F + L L GL +E L I ++ + + + + +
Sbjct: 585 AMLNNAQPDQYEAPDKDFMIVALDLLSGL--AEGLGGNIEQLVARSNILTLMYQCMQDKM 642
Query: 789 AALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMS--CNLQLTIVALSHLVM 846
+ + + + + +K D + L+ +S N I +S +
Sbjct: 643 PEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMG 702
Query: 847 SCNLQLYTKLIDFLLEGLTTNKSTSTNR-TYIQCFAAICRQAGHRFAEHIERVMPLILKY 905
++ L+E + + T + A +++ +
Sbjct: 703 IEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTS 762
Query: 906 SRE-EDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSE 964
R D+E ++ + + P + + + P +
Sbjct: 763 LRNIRDNEEKDSAFRGICTMISVNPSGVIQDF------------IFFCDAVASWINP-KD 809
Query: 965 EVKSAASYTLGSIAEIIS---WQSTSTSGVAQLQQ 996
+++ L + W+ S L++
Sbjct: 810 DLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKE 844
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 65.2 bits (158), Expect = 2e-10
Identities = 110/814 (13%), Positives = 266/814 (32%), Gaps = 139/814 (17%)
Query: 935 HIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQL 994
++++ ++ +K LN +S +++ + +IA Q+
Sbjct: 75 NVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQN--------- 125
Query: 995 QQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLT-----LIDPS-------NLLPRLQES 1042
P + +L + ++ T L K+ ++D ++P+ +
Sbjct: 126 ---WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQF 182
Query: 1043 LKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKIT 1102
K +S +R+ + N I T + + + A GD ++
Sbjct: 183 FKHSSPKIRS--HAVACVNQFII--------SRTQALMLHIDSFIENLFALAGDEEPEVR 232
Query: 1103 AEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQI 1162
L ++V P ++ + D D+ V A +
Sbjct: 233 KNVCRALVMLLEVRMDRLLPHMHNIVEYMLQR---------TQDQDENVALEACEFWLTL 283
Query: 1163 ICN--LGDYLKSELPVCLPILLDRLRNEITRLTTVKA----------------LTKIAAS 1204
D L LP +P+L++ ++ + +K L K +A+
Sbjct: 284 AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAA 343
Query: 1205 PLRIDL----RPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVT 1260
L + +L +P+L L ++ +K S +L+L + + L ++
Sbjct: 344 ALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY-LPELI 402
Query: 1261 VELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQV 1320
L +S+ + +T L+ A + + ++ +
Sbjct: 403 PHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTE---------------- 446
Query: 1321 ILNAFTPTSEEVKSAASYTLGSIAVG---NLQQYVPFVLKEI-----ENQPKRQYLLLHS 1372
+L +++ V+ AA ++ L Y+ ++L + + Q K +L +
Sbjct: 447 LLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDA 506
Query: 1373 LKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLL 1432
+ + + +Q +P + + + + ++ + ECL + S L
Sbjct: 507 IGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKD--LFPLLECLSSVATALQSGFL 564
Query: 1433 PRLQESLKSNSALMRTTVLTAVKFTIS-DQMTSSDKDFRFMATN---DLMSELQKDSIKL 1488
P + + L++ T+ A+ DQ + DKDF +A + L L + +L
Sbjct: 565 PYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQL 624
Query: 1489 DDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQ 1548
S ++ ++ + ++DK EV+ + LG L + V+ +
Sbjct: 625 VARS--NILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQ-HVKPCIADF------MPIL 675
Query: 1549 LRDISSIGLKTVISVVYCLGDRNSSSNMKIDTLAFTHTLLTTHPPAVFHPHIHILLPPVI 1608
+++ + + + +G+ ++ P+I ++L ++
Sbjct: 676 GTNLNPEFISVCNNATWAIGE------------------ISIQMGIEMQPYIPMVLHQLV 717
Query: 1609 IIKTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTCLDRVDMF--EFLNHLESGLRD 1666
I + + + + L C V +F+ + LR+
Sbjct: 718 EIIN------------RPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRN 765
Query: 1667 HYDI--KMLTYLMLARLAQMTPAALLQRLERIVE 1698
D K + + + + P+ ++Q +
Sbjct: 766 IRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCD 799
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 6e-04
Identities = 72/601 (11%), Positives = 165/601 (27%), Gaps = 74/601 (12%)
Query: 1257 NKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVAD 1316
N V + I L + + L+ ++ I +L + D
Sbjct: 74 NNVKAHFQNFPNGVTDFIKSECLNNIGD-----SSPLIRATVGILITTIASKGELQNWPD 128
Query: 1317 LKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIENQ-------------P 1363
L + + A L I + + VL N P
Sbjct: 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSP 188
Query: 1364 KRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKL 1423
K + + + + I ++ + L + + LF +E R V L L
Sbjct: 189 KIRSHAVACVNQFIISRTQA------LMLHIDSFIENLFALAGDEEPEVRKNVCRALVML 242
Query: 1424 TLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQK 1483
+ LLP + ++ + +T +++ + +L
Sbjct: 243 LEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIP 302
Query: 1484 DSIKLDDDSERKVVKMLLRLLEDKNGE-------VQNLAVKCLGPLVNKVKEFQVETIVD 1536
+ S+ ++ + + G+ ++ + L L N ++ + I+
Sbjct: 303 VLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILP 362
Query: 1537 ALCSNMVSDKEQLRDISSIGLKTVIS----------------VVYCLGDRNSSSNMKIDT 1580
L + + +++ + L + ++ CL D + ++ T
Sbjct: 363 LLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSD--KKALVRSIT 420
Query: 1581 LAFTHTLLTTHPPAVFHPHIHILLPPVIIIKTLIREVEMGPFKHTVDDGLDIRKAAFECM 1640
++ L+ ++ K +D +++AA
Sbjct: 421 CWTLSRYAHWVVSQPPDTYLKPLMTELL--------------KRILDSNKRVQEAACSAF 466
Query: 1641 YTLLDTCLDRVDMFEFLNHLESGLR---DHYDIKMLTYLMLARLAQMTPAALLQRLERIV 1697
TL + ++ +L ++ L Y K L L A +
Sbjct: 467 ATLEEEACT--ELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI 524
Query: 1698 EPLRNTVTLKVKANSVKQEYEKQDELKRSAMRAVAALLTIQDADKNPALNDFVATIKNSP 1757
+ L L K N +K E + L AL + P V ++ +
Sbjct: 525 QML--MPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTL 582
Query: 1758 ELQTIFDSMQKDSSLSNQQD----PHMMDMNKNPALNDFVATIKNSPELQTIFDSMQKDS 1813
+ ++ ++ ++ + + S L ++ MQ
Sbjct: 583 AQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKM 642
Query: 1814 S 1814
Sbjct: 643 P 643
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 4e-10
Identities = 74/586 (12%), Positives = 169/586 (28%), Gaps = 95/586 (16%)
Query: 795 VQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNL---QLTIVALSHLVMSCNLQ 851
V + F + + + L L + +L + +
Sbjct: 64 VLLALAEQLGTFTTLV--GGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS 121
Query: 852 LYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDD 911
L++ L ++ + F+ + + + ++
Sbjct: 122 DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS---SAVKAELRQYFRNLCSDDTP 178
Query: 912 ELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAAS 971
+R F + + +++ + N + + V+ A
Sbjct: 179 MVRRAAASKLGEFAKVLELDNV--------------KSEIIPMFSNLASDEQDSVRLLAV 224
Query: 972 YTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKL---- 1027
+IA+++ + + L+Q E + R +VA+ +L
Sbjct: 225 EACVNIAQLLPQEDLEALVMPTLRQA-----------AEDKSWRVRYMVADKFTELQKAV 273
Query: 1028 -TLIDPSNLLPRLQESLKSNSALMRTTHQSN-----QTFNVIIQRNDIHNHNEETSFIYS 1081
I ++L+P Q +K A +R + + + N I +
Sbjct: 274 GPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQ--------- 324
Query: 1082 FYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVR 1141
+L + V D + + V+ ++ + L +
Sbjct: 325 ----ILPCIKELVSDANQHVKSALASVIMGLSPILGK---------DNTIEHLLPLFLAQ 371
Query: 1142 LKAADIDQEVKERAISCMGQIICNLG--DYLKSELPVCLPILLDRLRNEITRLTTVKALT 1199
LK D EV+ IS + + +G +S LP + + D RL ++ +
Sbjct: 372 LK--DECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAED--AKWRVRLAIIEYMP 427
Query: 1200 KIA----ASPLRIDLRPI----LTDGIP--------ILGSFLRKNQRALKLSTLLLLDTL 1243
+A L + L D + L + K + +T++
Sbjct: 428 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 487
Query: 1244 LVNYPSAISTEMLNKVTVELAPLVSESDL--HIAQLTLTLLTSIAKIQPNALVEPAAASI 1301
+ P+ + L+ + + H+ L + P A V A
Sbjct: 488 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGD-----PVANVRFNVAKS 542
Query: 1302 LPQIGRHTDLTSVAD-LKQVILNAFTPTSEEVKSAASYTLGSIAVG 1346
L +IG D +++ +K ++ +VK A L +++
Sbjct: 543 LQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSLA 588
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 2e-09
Identities = 86/627 (13%), Positives = 193/627 (30%), Gaps = 120/627 (19%)
Query: 964 EEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAEC 1023
+++ + L +IA + + T + +P + + E+ +AE
Sbjct: 24 VQLRLNSIKKLSTIALALGVERT-------RSELLPFLTDTI-----YDEDEVLLALAEQ 71
Query: 1024 LGKLTLIDPSN-----LLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSF 1078
LG T + LLP L+ ++R ++ I + +
Sbjct: 72 LGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAV--ESLRAISHEHSPSD------- 122
Query: 1079 IYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCT 1138
+ + + L+ + GD F T+ L F ++S + + ++
Sbjct: 123 LEAHFVPLVKR--LAGGDWFTSRTSACGL----FSVCYPRVSSAVKAELRQYFRNLCS-- 174
Query: 1139 LVRLKAADIDQEVKERAISCMGQIICNLG-DYLKSELPVCLPILLDRL--RNEITRLTTV 1195
D V+ A S +G+ L D +KSE+ +P+ + + RL V
Sbjct: 175 -------DDTPMVRRAAASKLGEFAKVLELDNVKSEI---IPMFSNLASDEQDSVRLLAV 224
Query: 1196 KALTKIAASPLRIDLRPILTDGIP----------------ILGSFLRKNQRALKLSTLLL 1239
+A IA + DL ++ + + + + L+
Sbjct: 225 EACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVP 284
Query: 1240 LDTLLVNYPSA----ISTEMLNKVTVELAPLVSESDL--HIAQLTLTLLTSIAKIQPNAL 1293
L+ A ++ + + L+ E+ + I L++ N
Sbjct: 285 AFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSD-----ANQH 339
Query: 1294 VEPAAASILPQIGRH-TDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIA-VGNLQQY 1351
V+ A AS++ + ++ L + L EV+ L + V ++Q
Sbjct: 340 VKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQL 399
Query: 1352 VPFVLKEIE-----NQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCE 1406
+L I + + + ++ + + GV + + ++ +
Sbjct: 400 SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG-----QLGVEFFDEKLNSLCMAWLVD-- 452
Query: 1407 CQEEGTRNVVAECLGKLTLIDPSN-----LLPRLQESLKSNSALMRTTVLTAVKFTISDQ 1461
R L KL ++P++ + L R T L +
Sbjct: 453 -HVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINV----- 506
Query: 1462 MTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGP 1521
L +D + ++ +LR+ D V+ K L
Sbjct: 507 ---------------LSEVCGQDITT------KHMLPTVLRMAGDPVANVRFNVAKSLQK 545
Query: 1522 LVNKVKEFQVETIVDALCSNMVSDKEQ 1548
+ + +++ V + + D++
Sbjct: 546 IGPILDNSTLQSEVKPILEKLTQDQDV 572
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 2e-09
Identities = 72/640 (11%), Positives = 171/640 (26%), Gaps = 101/640 (15%)
Query: 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDIL 62
++ QLR S L T+ L G + L+ I +++V L + L
Sbjct: 21 NEDVQLRLNSIKKLSTIALAL--GVERT----RSELLPFLTDTIYDEDEV--LLALAEQL 72
Query: 63 SDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFL 122
+ G P + +L L + VR + + +L + + L
Sbjct: 73 GTFTTLVG--GPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 130
Query: 123 LEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQA 182
++ L ++ + F+ + + + ++ +R
Sbjct: 131 VKRLAGGDWFTSRTSACGLFSVCYPRVS---SAVKAELRQYFRNLCSDDTPMVRRAAASK 187
Query: 183 CEAFVQRCPKEITPH--IQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDG 240
F + + I + L D D L E ++
Sbjct: 188 LGEFAKVLELDNVKSEIIPMFSNLAS-----DEQ----DSVRLLAVEACVNIAQLLPQED 238
Query: 241 EDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREEN 300
+ +D SW+VR A + + P K+ E
Sbjct: 239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAE 296
Query: 301 VKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSI 360
V++ H + S C + + ++ ++ + + +
Sbjct: 297 VRAAASHKVKEFCENL------------------SADCRENVIMSQILPCIKELVSDANQ 338
Query: 361 RTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGG--EGGGEGMDTEEE 418
+ +++ L L ++ L+P + + + E +
Sbjct: 339 HVKSALASVIMGLSPILGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI 396
Query: 419 DGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIG--DMYRLVSPPLIARFKE 476
+ +D W+VR A + + + +G ++ +A +
Sbjct: 397 RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLA----GQLGVEFFDEKLNSLCMAWLVD 452
Query: 477 REENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLR 536
++ L++ +++ +
Sbjct: 453 HVYAIREAATSNLKKLVEKFGK----------------------EWAHATIIPKVLAMSG 490
Query: 537 EKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLL 596
+ + R L + L +D + ++ +LR+
Sbjct: 491 DPNYLHRMTTLFCINVLSEVCGQDIT----------------------TKHMLPTVLRMA 528
Query: 597 EDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTD 636
D V+ K L + + S L+ +++PIL
Sbjct: 529 GDPVANVRFNVAKSLQKIGP---ILDNSTLQSEVKPILEK 565
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 4e-08
Identities = 90/639 (14%), Positives = 198/639 (30%), Gaps = 106/639 (16%)
Query: 429 EYSDDDDMSWKVRRAAAKCLEAII------ATRRDLIGDMYRLVSPPLIARFKEREENVK 482
+ ++D ++R + K L I TR +L+ P + E+ V
Sbjct: 17 DELRNED--VQLRLNSIKKLSTIALALGVERTRSELL---------PFLTDTIYDEDEVL 65
Query: 483 ---SDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKS 539
++ + L+ G L P + E++ V + ++A+ +
Sbjct: 66 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVR---DKAVESLRAISHEHSPSD 122
Query: 540 IRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDK 599
+ + L++ L R A L S ++ + ++ + L D
Sbjct: 123 LE--AHFVPLVKRLAGGDWFTSRTSACG-LFSVCYP---RVSSAVKAELRQYFRNLCSDD 176
Query: 600 NGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLL 659
V+ A LG K L + ++ IP+ + Q +++L +
Sbjct: 177 TPMVRRAAASKLGEFAKVLEL----------DNVKSEIIPMFSNLASDEQDSVRLLAVEA 226
Query: 660 LDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAA 719
+ P ++ L + + + T + K + +
Sbjct: 227 CVNIAQLLPQEDLEALVMPT---LRQAAEDKSWRVRYMVADKFTELQKAVGPEITKT--- 280
Query: 720 SILPQVLQIAKSPLLQ--GAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALH 777
++P + K + AA + EF ++L + S++L + V
Sbjct: 281 DLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHV 340
Query: 778 KQAFHSLAKCVAALAITVQREALPVVEKFLKELKTN-KDDAHQVTIVALSHL-------- 828
K A LA + L+ + ++ +E L KD+ +V + +S+L
Sbjct: 341 KSA---LASVIMGLSPILGKD--NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG 395
Query: 829 -------VMSCNLQL-----------TIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKST 870
++ ++L I + L ++ + + ++ L +
Sbjct: 396 IRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVY 455
Query: 871 STNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPK 930
+ + + G ++P +L S + + R L + C +
Sbjct: 456 AIREAATSNLKKLVEKFG--KEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ 513
Query: 931 EITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSG 990
+IT + +L V+ + +L I I+
Sbjct: 514 DITTK--------------HMLPTVLRMAGDPVANVRFNVAKSLQKIGPIL--------D 551
Query: 991 VAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTL 1029
+ LQ V I +L + Q+ + E L L+L
Sbjct: 552 NSTLQSEVKPILEKL---TQDQDVDVKYFAQEALTVLSL 587
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 9e-04
Identities = 22/133 (16%), Positives = 50/133 (37%), Gaps = 4/133 (3%)
Query: 53 SVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNL 112
+++ A L L+ +FG H I+ +L P R T+ ++ L C
Sbjct: 456 AIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ 513
Query: 113 QLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREED 172
+ TK + + + + + + I + V P++ K ++++D
Sbjct: 514 DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS--TLQSEVKPILEKLTQDQD 571
Query: 173 DELREFCLQACEA 185
+++ F +A
Sbjct: 572 VDVKYFAQEALTV 584
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 4e-10
Identities = 73/570 (12%), Positives = 171/570 (30%), Gaps = 67/570 (11%)
Query: 433 DDDMSWKVRRAAAKCLEAIIATRRDLIGDM--YRLVSPPLIARFKEREENVKSDIFHAYM 490
+ S VR AA L + ++ + + + + + V++ F
Sbjct: 190 STETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLC 249
Query: 491 ALLKGTRTFSPLTPSDPN--------QMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRT 542
++ TF + P M + V ++ + S + + + + +
Sbjct: 250 KIMSKYYTF--MKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQF 307
Query: 543 RQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDD--SERKVVKMLLRLLEDKN 600
Q L ++S +L++ L + + +DD + L+L
Sbjct: 308 PQSPLQSYNFALSSIKDVV-----PNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNC 362
Query: 601 GEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLL 660
G L P+ + + + + + ++
Sbjct: 363 GN------HILEPVL-----------------------EFVEQNITADNWRNREAAVMAF 393
Query: 661 DTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAK-IQPNALVEPAAA 719
+++ T +++ + L+++ L + + T + IA + + +
Sbjct: 394 GSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLP 453
Query: 720 SILPQVLQ-IAKSPLLQGAALTSMLEFFKSLVLAELPGLS--FSELLNMLIAPVMTGTA- 775
++ L + P + +++ + L A + + L++ LI
Sbjct: 454 GVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNE 513
Query: 776 --LHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIV--ALSHLVMS 831
AF +L V TV + + + +L + A S +
Sbjct: 514 FNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQ 573
Query: 832 CNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRF 891
N+ + A+ S + L+ L S +A+ G F
Sbjct: 574 SNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGF 633
Query: 892 AEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADL 951
+++E P +LK + D + + ++ + ++ + L
Sbjct: 634 EKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAM--------MNVL 685
Query: 952 KQVILNAFTPTSEEVKSAASYTLGSIAEII 981
Q+I N E+K A G IA I
Sbjct: 686 AQMISN--PNARRELKPAVLSVFGDIASNI 713
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 1e-08
Identities = 81/681 (11%), Positives = 200/681 (29%), Gaps = 90/681 (13%)
Query: 537 EKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLL 596
E + + ++ + + + A+ + + + + +L+ ++
Sbjct: 126 ELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIV 185
Query: 597 -----EDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRA 651
+ + V+ A+ L + + R R L + ++ +
Sbjct: 186 QGAQSTETSKAVRLAALNALADSLIFIKN---NMEREGERNYL---MQVVCEATQAEDIE 239
Query: 652 LKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPN 711
++ + L ++ Y + + M + + + +A +T+ ++I +
Sbjct: 240 VQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICE---- 295
Query: 712 ALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVM 771
I ++ Q +SPL S ++ LLN+L
Sbjct: 296 -----EEIDIAYELAQFPQSPLQSYNFALSSIKDV------------VPNLLNLLTRQNE 338
Query: 772 TGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKD-DAHQVTIVALSHLVM 830
S C+ A L V +F+++ T + + ++A ++
Sbjct: 339 DPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMD 398
Query: 831 SCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHR 890
+ + + +L + T C I
Sbjct: 399 GPDKVQRT------------YYVHQALPSILNLMNDQSLQVKETT-AWCIGRIADSVAES 445
Query: 891 F--AEHIERVMPLILKYSREEDDELREFC---LQACEAFVQRCPKEITPHIQSIGRHTDL 945
+H+ V+ L ++ + E + P I ++
Sbjct: 446 IDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPAL------ 499
Query: 946 TSVADLKQVILNAFTPTSEE-VKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQ 1004
+ +I A +E +++A L ++ E T A + FV Q
Sbjct: 500 -----VDGLIGAANRIDNEFNARASAFSALTTMVE--YATDTVAETSASISTFVMDKLGQ 552
Query: 1005 LFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVII 1064
E Q + L L + ++ + S++ ++++
Sbjct: 553 TMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVE-------------PVADMLM 599
Query: 1065 QRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYK------------ITAEALLVLQQF 1112
++++FI ++ +S + AS+G F K + V
Sbjct: 600 GLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITA 659
Query: 1113 VKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKS 1172
V I +++ DF ++ + + + +E+K +S G I N+G
Sbjct: 660 VGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIP 719
Query: 1173 ELPVCLPILLDRLRNEITRLT 1193
L + + + + T
Sbjct: 720 YLNDIMALCVAAQNTKPENGT 740
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 57.1 bits (137), Expect = 5e-08
Identities = 94/761 (12%), Positives = 222/761 (29%), Gaps = 127/761 (16%)
Query: 253 DDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMAL 312
+ V+RA+ L + + + + LIA + + S
Sbjct: 144 GAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVR----- 198
Query: 313 LKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRE 372
L + N M++E + L++ + + + I + L +
Sbjct: 199 LAALNALADSLIFIKNNMEREG--------ERNYLMQVVCEATQAEDIEVQAAAFGCLCK 250
Query: 373 LVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSD 432
++ + P + + +T
Sbjct: 251 IMSKYYTFMKPYMEQALYALTIAT------------------------------------ 274
Query: 433 DDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMAL 492
+ KV + I D+ E + +S + AL
Sbjct: 275 MKSPNDKVASMTVEFWSTICEEEIDIA---------------YELAQFPQSPLQSYNFAL 319
Query: 493 LKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRE 552
L Q + + +S + ++ + L + +
Sbjct: 320 SSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEP---VLEFVEQ 376
Query: 553 LMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLG 612
+T+ + R A S + + + +L L+ D++ +V+ C+G
Sbjct: 377 NITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIG 436
Query: 613 PLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAIS 672
+ ++ + ID + L + L+ + + + + + L+ A
Sbjct: 437 RIADSVAES------IDPQQHLPGVVQACLIGLQDHPK-VATNCSWTIINLVEQLAEATP 489
Query: 673 TEMLNKVTVELAPLV-----SESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQ 727
+ + N + L+ +++ + + LT++ + + + +ASI V+
Sbjct: 490 SPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVA-ETSASISTFVMD 548
Query: 728 IAKSPLLQGAALTSMLEF--FKSLVLAELPGLS---------FSELLNMLIAPVMTGTAL 776
+ ++ + + L L L+ + +ML+
Sbjct: 549 KLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEK 608
Query: 777 HKQAF--HSLAKCVAALAITVQREALPVVEKFLKEL-KTNKDDAHQVTIVALSHLVMSCN 833
AF + ++ALA ++ + +E F L K V+I A+
Sbjct: 609 KDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVG------- 661
Query: 834 LQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNR-TYIQCFAAICRQAGHRFA 892
I +S+ + + +++ L + ++ + + + F I G F
Sbjct: 662 ---FIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFI 718
Query: 893 EHIERVMPL---ILKYSREEDDE--------LREFCLQACEAFVQ---RCPKEITPHIQS 938
++ +M L E + E L A V P+ + P++ +
Sbjct: 719 PYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGT 778
Query: 939 IGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAE 979
I + QV + + + AA +G IA
Sbjct: 779 I--------FQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA 811
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 1e-07
Identities = 35/238 (14%), Positives = 81/238 (34%), Gaps = 20/238 (8%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALD 60
+ D + L+++ S L + + + ++ V + G +EK++ ++ +
Sbjct: 562 TLEDAQSLQELQSNILTVLAAVIRKSPSS-VEPVADMLMGLFFRLLEKKDSAFIEDDVFY 620
Query: 61 ILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQL---YTK 117
+S L + G + LL L+ V + ++ + S
Sbjct: 621 AISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDA 680
Query: 118 LIDFLLEGLTTNKSTSTNR-TYIQCFAAICRQAGHRFAEHIERVMPL---ILKYSREEDD 173
+++ L + ++ + + + F I G F ++ +M L E
Sbjct: 681 MMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGT 740
Query: 174 E--------LREFCLQACEAFVQ---RCPKEITPHIQSITELCLTYITYDPNYNYEDE 220
+ E L A V P+ + P++ +I + + + DP ED
Sbjct: 741 LEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQF-IAQVAEDPQLYSEDA 797
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 7e-05
Identities = 97/854 (11%), Positives = 254/854 (29%), Gaps = 105/854 (12%)
Query: 908 EEDDELREFC-LQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEV 966
E R L V + + Q + +K L A +
Sbjct: 52 NTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRI 111
Query: 967 KSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQE-EGTRNVVAECLG 1025
+AA+ + +IA+I P + + + ++ E + LG
Sbjct: 112 ANAAAQLIAAIADI-----------ELPHGAWPELMKIMVDNTGAEQPENVKRASLLALG 160
Query: 1026 KLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNV----IIQRNDIHNHNEETSFIYS 1081
+ + S A+++ + + V + D +
Sbjct: 161 YMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREG 220
Query: 1082 FYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTL-- 1139
+L+ V + ++ A A L + + P+
Sbjct: 221 ERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTF-------MKPYMEQALYALTIA 273
Query: 1140 --------VRLKAADIDQEVKERAISC------MGQIICNLGDYLKSELPVCLPILLDRL 1185
V + + E I Q ++ S + +P LL+ L
Sbjct: 274 TMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLL 333
Query: 1186 RNEI---------TRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLST 1236
+ ++ L A + L P+L + + + + +
Sbjct: 334 TRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVL----EFVEQNITADNWRNREAA 389
Query: 1237 LLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAK-IQPNALVE 1295
++ +++ T +++ + L+++ L + + T + IA + + +
Sbjct: 390 VMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ 449
Query: 1296 PAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFV 1355
++ L + E++ A + + + +
Sbjct: 450 QHLPGVVQACLIG--LQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLI-GA 506
Query: 1356 LKEIENQPKRQYLLLHSLKEII-SWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRN 1414
I+N+ + +L ++ T A + FV Q E Q
Sbjct: 507 ANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDA 566
Query: 1415 VVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMAT 1474
+ L L + ++ + S++ + ++ + + + ++ +D F A
Sbjct: 567 QSLQELQSNILTVLAAVIRKSPSSVEPVADML----MGLFFRLLEKKDSAFIEDDVFYAI 622
Query: 1475 NDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETI 1534
+ L + L K K + LL+ L + V AV + + N ++E
Sbjct: 623 SALAASLGKGFEKYLE----TFSPYLLKALNQVDSPVSITAVGFIADISNSLEE-DFRRY 677
Query: 1535 VDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRNSSSNMKIDTLAFTHTLLTTHPPA 1594
DA+ + + + + N+ +K L+ + +
Sbjct: 678 SDAMMNVLAQ---------------------MISNPNARRELKPAVLSVFGDIASNIGAD 716
Query: 1595 VFHPHIHILLPPVIIIKTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTCLDRVD-- 1652
F P+++ ++ + + E +D + + +A + ++ D+ +
Sbjct: 717 -FIPYLNDIMALCVAAQNTKPENGT---LEALDYQIKVLEAVLDAYVGIVAGLHDKPEAL 772
Query: 1653 ------MFEFLNHL--ESGLRDHYDIKMLTYLMLARLAQMTPAALLQRL---ERIVEPLR 1701
+F+F+ + + L ++ +A M P +++ + +++ ++
Sbjct: 773 FPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIK 832
Query: 1702 NTVTLKVKANSVKQ 1715
T + ++ + + K
Sbjct: 833 RTRSGQLFSQATKD 846
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 4e-04
Identities = 20/195 (10%), Positives = 52/195 (26%), Gaps = 18/195 (9%)
Query: 42 LSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKR--- 98
+ A + + + A L+ ++ + I T ++ +L +
Sbjct: 504 IGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTL 563
Query: 99 ---------------TIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFA 143
+ A+ S + L+ L S +
Sbjct: 564 EDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAIS 623
Query: 144 AICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITE 203
A+ G F +++E P +LK + D + + ++ + ++
Sbjct: 624 ALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMN 683
Query: 204 LCLTYITYDPNYNYE 218
+ I+
Sbjct: 684 VLAQMISNPNARREL 698
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 5e-09
Identities = 44/290 (15%), Positives = 91/290 (31%), Gaps = 80/290 (27%)
Query: 344 VPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEG 403
+ + K +L EK R++ L +L +L+ P AL+ + V
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVI------- 65
Query: 404 LGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMY 463
D + + A KCL + +
Sbjct: 66 -----------------------------TKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96
Query: 464 RLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQ 523
P L+ +FKE++ NV + + A A+ ST
Sbjct: 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYA--------------------------STS 130
Query: 524 VPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDD 583
+ + +++ L K+ + + + +T + L+
Sbjct: 131 LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPT------------------ALNKK 172
Query: 584 SERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPI 633
+ + L++ L + + V++ + + LG L K + A +PL D+ P+
Sbjct: 173 LLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPL 222
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 8e-04
Identities = 39/233 (16%), Positives = 77/233 (33%), Gaps = 49/233 (21%)
Query: 1425 LIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKD 1484
L+DP ++L ++ + D++ R + L L
Sbjct: 6 LLDPVDILSKMPKDF-------------------YDKLEEKKWTLRKESLEVLEKLLTDH 46
Query: 1485 SIKLDDDSERKVVKMLLRLLE-DKNGEVQNLAVKCLGPLVNKVKEF---QVETIVDALCS 1540
KL++ +V L +++ D N + +A KCL L + + V +L
Sbjct: 47 P-KLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLE 105
Query: 1541 NMVSDKEQLRD---------ISSIGLKTVISVVY-CLGDRNSSSNMKIDTLAFTHTLLTT 1590
K + +S L+ + L ++N ++K +T F LT
Sbjct: 106 KFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNP--SVKSETALFIARALTR 163
Query: 1591 HPPAVFHPHIHILLPPVIIIKTLIREVEMGPFKHTVDDGLDIRKAAFECMYTL 1643
P + + LL ++ K + +R ++ E + TL
Sbjct: 164 TQPTALNKKLLKLLTTSLV-------------KTLNEPDPTVRDSSAEALGTL 203
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 58.0 bits (139), Expect = 2e-08
Identities = 118/855 (13%), Positives = 238/855 (27%), Gaps = 136/855 (15%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGS-NALAANVCRRITGKLSTAIEKQEDVSVQLEAL 59
+ ++ + S +E+P+ L + +T ++ L
Sbjct: 99 LGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVT-------NPNSTEHMKESTL 151
Query: 60 DILSDLLSRF-GALLPSFHFVILTALLP--QLSSPRQAVRKRTIVALSHLVMSCNLQLYT 116
+ + + L ILTA++ + P V+ AL + +
Sbjct: 152 EAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDK 211
Query: 117 KLIDFLLEGLTTNKSTSTN----RTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREED 172
+ + + + + +Q I ++ + I + + D
Sbjct: 212 ESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD 271
Query: 173 DELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEG 232
+ E LQ E + C +E+ I++ + Y +G
Sbjct: 272 ID--EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFY------------AKG 317
Query: 233 MDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIA 292
+ + +DDD W +AA CL + D D+ V P +
Sbjct: 318 ALQYLVPILTQTLTKQDE-NDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKE 373
Query: 293 RFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQ 352
K + + A+ +L+G L V + L
Sbjct: 374 HIKNPDWRYRDAAVMAFGCILEGPEPSQ-------------------LKPLVIQAMPTLI 414
Query: 353 CQLREKSIRTRQDCLALLRELVQTLPGC------LAPSLPALI------PDVTSVAEWDE 400
+++ S+ R + + + LP LAP L LI P V S W
Sbjct: 415 ELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAF 474
Query: 401 EEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDD---------DDMSWKVRRAAAKCLEAI 451
E E D ++ E + + D + E++
Sbjct: 475 SSLA--EAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESL 532
Query: 452 IATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMD 511
+ ++ D Y V M L+ S +++
Sbjct: 533 MEIVKNSAKDCYPAVQK----------------TTLVIMERLQQVLQMESHIQSTSDRIQ 576
Query: 512 QEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSD-KDFRFMATNDLM 570
D L +T L K + S L + + S ++ MA + L+
Sbjct: 577 FNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLV 636
Query: 571 SELQKDSIKLDDDSERKVVKMLLRLLEDK-NGEVQNLAVKCLGPLFKALTKIAASPLRID 629
L + +K + L L++ +V AV +G L +AL +
Sbjct: 637 EVLGGEFLKYMEA----FKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQS--------N 684
Query: 630 LRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSE 689
+ P + + +L L + ++ S ++ + E +
Sbjct: 685 IIPFCDEVMQLLLENLGNEN---------VHRSVKPQILSVFG-DIALAIGGEFKKYLEV 734
Query: 690 SDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQG--AALTSMLEFFK 747
L L ++ Q + + L+ + G L E
Sbjct: 735 --------VLNTLQQASQAQVDKSDYDMVDYL--NELRESCLEAYTGIVQGLKGDQENVH 784
Query: 748 SLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREAL------P 801
V+ P + F + I + A + L ++ L P
Sbjct: 785 PDVMLVQPRVEF---ILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARP 841
Query: 802 VVEKFLKELKTNKDD 816
++ + L E + +K +
Sbjct: 842 MIHELLTEGRRSKTN 856
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 1e-07
Identities = 111/872 (12%), Positives = 253/872 (29%), Gaps = 127/872 (14%)
Query: 519 LLSTQVPSLVKALQCQLR--EKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKD 576
+P+ + L L S R ++ +TS D D + ++ Q+
Sbjct: 28 AAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK--------AQYQQR 79
Query: 577 SIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTD 636
+ +D ++ R+V +L L + + + + + IA + + ++ P +
Sbjct: 80 WLAIDANARREVKNYVLHTLGTETYRPSSAS--------QCVAGIACAEIPVNQWP---E 128
Query: 637 GIPILGSFLRK--NQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLV---SESD 691
IP L + + + +K STL + + + + N++ + + S+
Sbjct: 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSN 188
Query: 692 LHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFKSLV- 750
T LL S+ + N E I+ V + + P + ++LV
Sbjct: 189 NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRV-----AALQNLVK 243
Query: 751 LAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKEL 810
+ L + + + K +A V E + + + +
Sbjct: 244 IMSLYYQYMETYMGPALFAITIEAM--KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAA 301
Query: 811 KTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKST 870
+ + H A L ++ Q TK + +
Sbjct: 302 EQGRPPEHTSKFYAKGALQY--------------LVPILTQTLTKQDENDDDD-----DW 342
Query: 871 STNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRC-P 929
+ + C + H V+P I ++ + D R+ + A ++ P
Sbjct: 343 NPCKAAGVCLMLLATCCEDDIVPH---VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP 399
Query: 930 KEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTS 989
++ P + ++ S V+ A++T+G I E +
Sbjct: 400 SQLKPLVIQAM------------PTLIELMKDPSVVVRDTAAWTVGRICE---LLPEAAI 444
Query: 990 GVAQLQQFVPAIWAQLFLHCECQEEGTRNVV---------AECLGKLTLIDPSNLLPRLQ 1040
L + + L A+ L +
Sbjct: 445 NDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFE 504
Query: 1041 ESLKSNSALMRT--THQSNQTFNVIIQRNDIHNHNEETSFIYSFYYF-----LLSPVIAS 1093
++ HQ+N + +I ++ + + L V+
Sbjct: 505 LIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQM 564
Query: 1094 VGDNFYKITAEALLVLQQFVK--VIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEV 1151
LQ + + L D + + L ++ V
Sbjct: 565 ESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGV 624
Query: 1152 KERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNE---ITRLTTVKALTKIAASPLRI 1208
+E A+ + ++ LG + P L L+N L V + + + L+
Sbjct: 625 QEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRA-LQS 683
Query: 1209 DLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVS 1268
++ P + + +L L + ++ S ++ + E +
Sbjct: 684 NIIPFCDEVMQLLLENLGNEN---------VHRSVKPQILSVFG-DIALAIGGEFKKYLE 733
Query: 1269 ESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPT 1328
L L ++ Q + + + + +L++ L A+T
Sbjct: 734 V--------VLNTLQQASQAQVDK-------------SDYDMVDYLNELRESCLEAYTGI 772
Query: 1329 SEEVKSAASYTLGSIAVGNLQQYVPFVLKEIE 1360
+ +K + +Q V F+L I+
Sbjct: 773 VQGLKGDQENVHPDVM--LVQPRVEFILSFID 802
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 1e-05
Identities = 16/156 (10%), Positives = 47/156 (30%), Gaps = 9/156 (5%)
Query: 52 VSVQLEALDILSDLLSRFGALLPSFHFVILTALLP----QLSSPRQAVRKRTIVALSHLV 107
+ ++ L++ ++ ++A +P + + +R ++ L
Sbjct: 101 PAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLS 160
Query: 108 MSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKY 167
K+ LL+ L +K+ + AG V + +
Sbjct: 161 DVVGPL---KMTPMLLDAL-KSKNARQRSECLLVIEYYITNAG-ISPLKSLSVEKTVAPF 215
Query: 168 SREEDDELREFCLQACEAFVQRCPKEITPHIQSITE 203
++D +R + A + ++ + +
Sbjct: 216 VGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMAD 251
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 1e-04
Identities = 35/238 (14%), Positives = 68/238 (28%), Gaps = 22/238 (9%)
Query: 49 QEDVSVQLEALDILSDLLSRF-GALLPSFHFVILTALL--PQLSSPRQAVRKRTIVALSH 105
++ L+ + + L ILTA++ + P V+ AL +
Sbjct: 141 NSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLN 200
Query: 106 LVMSCNLQL-YTKLIDFLLEGL---TTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVM 161
+ F+++ + T T +Q I ++ +
Sbjct: 201 SLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPAL 260
Query: 162 PLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEE 221
I + + D + E LQ E + C +E+ I++ + Y
Sbjct: 261 FAITIEAMKSDID--EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYA--- 315
Query: 222 EGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLI 279
+ + +DDD W +AA CL + D I
Sbjct: 316 ----------KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI 363
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 32/188 (17%), Positives = 64/188 (34%), Gaps = 37/188 (19%)
Query: 433 DDDMSWKVRRAAAKCLEAIIAT--RRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYM 490
D + + AA+ +E I D LV PL+ R KE++ +V I A +
Sbjct: 70 QKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALL 129
Query: 491 ALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALL 550
+ + S + ++K + ++ K+ + R +C L
Sbjct: 130 TIC-------------------KYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLF 170
Query: 551 RELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKC 610
M D S LQ+ +VV ++++++ D ++ + +
Sbjct: 171 NASMKE---------EKDGYSTLQRYLKD-------EVVPIVIQIVNDTQPAIRTIGFES 214
Query: 611 LGPLFKAL 618
L K
Sbjct: 215 FAILIKIF 222
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 3e-04
Identities = 32/268 (11%), Positives = 77/268 (28%), Gaps = 36/268 (13%)
Query: 767 IAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALS 826
+ ++ + L + + TV + A+ ++ K + + + L
Sbjct: 20 LEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLK 79
Query: 827 HLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQ 886
Q A + + +L+ ++ L N +T I A+
Sbjct: 80 KSEAIPLTQEIAKAFGQMA-----KEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEI 134
Query: 887 AGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLT 946
A + ++ + ++ E + L EA + K + P +
Sbjct: 135 AKAN-PMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLP--------- 184
Query: 947 SVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLF 1006
I+N E V+++A L +A + + + +
Sbjct: 185 -------RIINLLHDGDEIVRASAVEALVHLATLND-------------KLRKVV-IKRL 223
Query: 1007 LHCECQEEGTRNVVAECLGKLTLIDPSN 1034
V E + +L L++ +
Sbjct: 224 EELNDTSSLVNKTVKEGISRLLLLEGHS 251
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1827 | |||
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 100.0 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 100.0 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 100.0 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 100.0 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 100.0 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 100.0 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 100.0 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 100.0 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 100.0 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.96 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.87 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 99.83 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.81 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 99.81 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 99.77 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 99.75 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 99.74 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 99.72 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.66 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.66 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 99.65 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.63 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 99.63 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 99.61 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.61 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.6 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.57 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.55 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.53 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.52 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.51 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.5 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 99.5 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.49 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 99.47 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.47 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.44 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.43 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 99.42 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.42 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.42 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.41 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.37 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.37 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 99.33 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 99.28 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 99.26 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.18 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.18 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.17 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.17 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.12 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.1 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 99.03 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.01 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 99.01 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 98.98 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.87 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.84 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.84 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 98.82 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.79 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 98.76 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 98.73 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 98.72 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 98.7 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 98.64 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 98.63 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 98.63 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 98.62 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 98.58 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 98.45 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 98.42 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 98.41 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 98.35 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.34 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 98.33 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 98.32 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 98.31 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 98.3 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 98.27 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 98.23 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 98.21 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 98.15 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.14 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 97.99 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 97.95 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 97.89 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 97.83 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 97.79 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.77 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 97.73 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 97.66 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 97.64 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.55 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.53 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.46 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.38 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.34 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 97.11 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 96.93 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 96.9 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 96.79 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 96.6 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 96.5 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 96.47 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 95.98 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 95.94 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 95.69 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 95.13 | |
| 1vsy_4 | 799 | Proteasome activator BLM10; 20S proteasome BLM10, | 95.09 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 94.16 | |
| 4atg_A | 196 | TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton | 93.3 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 92.82 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 89.53 | |
| 4atg_A | 196 | TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton | 87.77 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 86.34 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 84.54 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 83.24 | |
| 3tj1_A | 649 | RNA polymerase I-specific transcription initiatio | 81.93 | |
| 1w9c_A | 321 | CRM1 protein, exportin 1; nuclear protein, nuclear | 81.85 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 80.16 |
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-103 Score=1116.39 Aligned_cols=1117 Identities=47% Similarity=0.715 Sum_probs=861.3
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCC--hhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHH
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGS--NALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVI 80 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~--~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~i 80 (1827)
++++++|..++.+|++++..++... +.......+.++|.|++++.+.+++.+|.+|+.+|+++++.+|+.+.+|.+.+
T Consensus 97 d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~l 176 (1230)
T 1u6g_C 97 SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSI 176 (1230)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4567899999999999999998752 12344578999999999997545899999999999999999999998999999
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHH
Q psy14676 81 LTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERV 160 (1827)
Q Consensus 81 l~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i 160 (1827)
++.+++.|.++++.||++|+.|++.++..+++..+..+++.+++.|.+..+..+|+.++++++.+++..|+.|.||++.+
T Consensus 177 l~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l 256 (1230)
T 1u6g_C 177 LTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKI 256 (1230)
T ss_dssp HHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999988888888889998886544456889999999999999999999999999
Q ss_pred HHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCC
Q psy14676 161 MPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDG 240 (1827)
Q Consensus 161 ~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~ 240 (1827)
+|.+++.++++++++|+.++++++.|++.||+++.||++.++|.+++.+++||+|.+++++++. +.+++.+++
T Consensus 257 ~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~------~~~~~~~~~- 329 (1230)
T 1u6g_C 257 IPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDE------NAMDADGGD- 329 (1230)
T ss_dssp HHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC----------------------------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCccccccc------ccccccccc-
Confidence 9999999999999999999999999999999999999999999999999999998444222210 001110000
Q ss_pred CCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccC
Q psy14676 241 EDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFS 320 (1827)
Q Consensus 241 dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~ 320 (1827)
+++++.+++|++++|.+|+||++|+.+++.++.+.|+.+.++++.++|.++.++++++++||.+++.+++.+++..+...
T Consensus 330 ~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 409 (1230)
T 1u6g_C 330 DDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQ 409 (1230)
T ss_dssp ---------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC-
T ss_pred cchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhcccc
Confidence 11122234677778899999999999999999988888899999999999999999999999999999999998765432
Q ss_pred CCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhh
Q psy14676 321 PLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDE 400 (1827)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~ 400 (1827)
.|..+ +..+...+++...+...+|.+++.+.+.|+|+++++|++++.+++.+....++.+.+|++.++|.+...+++.
T Consensus 410 ~~~~~-~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~- 487 (1230)
T 1u6g_C 410 SWLCD-PDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDK- 487 (1230)
T ss_dssp ------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCS-
T ss_pred ccccC-ccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCC-
Confidence 22110 1111222367788999999999999999999999999999999999999999888999999999999998421
Q ss_pred cccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh-hhhhhhHHhhhhhHHHhhcchhh
Q psy14676 401 EEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR-DLIGDMYRLVSPPLIARFKEREE 479 (1827)
Q Consensus 401 ~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~-~~f~~~~~~l~~~L~~~~~d~~~ 479 (1827)
. ....+|..++.++..+++.++ +.|.||++.++|.++.+++|+.+
T Consensus 488 ---------------------------------~-~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~ 533 (1230)
T 1u6g_C 488 ---------------------------------S-SSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFY 533 (1230)
T ss_dssp ---------------------------------S-SCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSH
T ss_pred ---------------------------------C-CcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccch
Confidence 0 023689999999999998887 66889988888888777777666
Q ss_pred hhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCc
Q psy14676 480 NVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDK 559 (1827)
Q Consensus 480 ~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dp 559 (1827)
+||..|+.++.++++.+|...
T Consensus 534 ~v~~~al~~l~~l~~~~~~~~----------------------------------------------------------- 554 (1230)
T 1u6g_C 534 KITSEALLVTQQLVKVIRPLD----------------------------------------------------------- 554 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHCCSS-----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCcc-----------------------------------------------------------
Confidence 666555554444443322000
Q ss_pred cccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhh
Q psy14676 560 DFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIP 639 (1827)
Q Consensus 560 d~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~ 639 (1827)
T Consensus 555 -------------------------------------------------------------------------------- 554 (1230)
T 1u6g_C 555 -------------------------------------------------------------------------------- 554 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhh
Q psy14676 640 ILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAA 719 (1827)
Q Consensus 640 ~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~ 719 (1827)
T Consensus 555 -------------------------------------------------------------------------------- 554 (1230)
T 1u6g_C 555 -------------------------------------------------------------------------------- 554 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHhhhhcccccchhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhh
Q psy14676 720 SILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREA 799 (1827)
Q Consensus 720 ~llp~ll~l~~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~ 799 (1827)
T Consensus 555 -------------------------------------------------------------------------------- 554 (1230)
T 1u6g_C 555 -------------------------------------------------------------------------------- 554 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcCCCChhhHHHHHHH
Q psy14676 800 LPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQC 879 (1827)
Q Consensus 800 ~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~~l~~ 879 (1827)
T Consensus 555 -------------------------------------------------------------------------------- 554 (1230)
T 1u6g_C 555 -------------------------------------------------------------------------------- 554 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhccccchhhhhhhHHHHHHhh--cccchHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHh
Q psy14676 880 FAAICRQAGHRFAEHIERVMPLILKYS--REEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILN 957 (1827)
Q Consensus 880 l~~L~~~~~~~~~~yl~~ilP~ll~~l--~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~ 957 (1827)
...+..+.||++.++|.++..+ .|.+.++|+.|+++++.++..++..+.+|++.+
T Consensus 555 -----~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~------------------ 611 (1230)
T 1u6g_C 555 -----QPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNT------------------ 611 (1230)
T ss_dssp -----SCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHH------------------
T ss_pred -----cccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHH------------------
Confidence 0002345566777777777777 566788999999999998877776665554422
Q ss_pred hcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchH
Q psy14676 958 AFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLP 1037 (1827)
Q Consensus 958 ~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP 1037 (1827)
++.|.
T Consensus 612 --------------------------------------------l~~L~------------------------------- 616 (1230)
T 1u6g_C 612 --------------------------------------------LQIFL------------------------------- 616 (1230)
T ss_dssp --------------------------------------------HHHHH-------------------------------
T ss_pred --------------------------------------------HHHHH-------------------------------
Confidence 22221
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHHHhc-cccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHh
Q psy14676 1038 RLQESLKSNSALMRTTHQSNQTFNVIIQ-RNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVI 1116 (1827)
Q Consensus 1038 ~L~~~L~s~~~~~R~~a~~~L~~l~~~~-~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l 1116 (1827)
+.+++ ...|..++.+++.++... +..+.++ ++.++|.+...+.|+...+|..++.+++.+++..
T Consensus 617 ---~~l~~--e~~r~~~~~al~~i~~~~~~~~~~~~----------~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~ 681 (1230)
T 1u6g_C 617 ---ERLKN--EITRLTTVKALTLIAGSPLKIDLRPV----------LGEGVPILASFLRKNQRALKLGTLSALDILIKNY 681 (1230)
T ss_dssp ---HHTTS--SSHHHHHHHHHHHHTTCSSCCCCHHH----------HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHC
T ss_pred ---HHhcc--chhHHHHHHHHHHHHhCccccchHHH----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 11111 124556666666444321 2233444 9999999999999999999999999999999874
Q ss_pred ccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHHH
Q psy14676 1117 RPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVK 1196 (1827)
Q Consensus 1117 ~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~av~ 1196 (1827)
.. ....+++.+++..++..+. +.|.+++..++.+++.++...+..+.++.+.++|.++..++....+-.+.+
T Consensus 682 ~~------~~~~~~v~~~l~~ll~ll~--~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 753 (1230)
T 1u6g_C 682 SD------SLTAAMIDAVLDELPPLIS--ESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALS 753 (1230)
T ss_dssp CT------TCCHHHHHHHHTTCGGGSC--TTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHH
T ss_pred cc------cCCHHHHHHHHHHHHhhcC--cchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHH
Confidence 31 1122445555444333333 778899999999999999888877777888999999888765442222223
Q ss_pred ----HHHHHhcCCCccccchhhhhhHhhhhhhhc--c---hhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhc
Q psy14676 1197 ----ALTKIAASPLRIDLRPILTDGIPILGSFLR--K---NQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLV 1267 (1827)
Q Consensus 1197 ----al~~ia~~~~~~dl~p~~~~~l~~L~~~Lr--k---~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll 1267 (1827)
.+..++..... ...+.++++.+...+. + .++..+..+..+++.++...+.... .++..+...+
T Consensus 754 ~l~~~~~~l~~~~~~---~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~-----~~~~~~~~~~ 825 (1230)
T 1u6g_C 754 AMLDFFQALVVTGTN---NLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP-----AVVGQFIQDV 825 (1230)
T ss_dssp HHHHHHHHHHTTCCT---TCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSH-----HHHTTTTTTT
T ss_pred HHHHHHHHHHhcCCC---CCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhH-----HHHHHHHHHh
Confidence 33334332110 1122333333332211 1 2355678889999998887655432 3455555555
Q ss_pred CC--CChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhh
Q psy14676 1268 SE--SDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAV 1345 (1827)
Q Consensus 1268 ~d--~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~ 1345 (1827)
.+ .+...+..++. ++|++|++.++...+++++.++.+|.+++++||.+|+.+||.++.
T Consensus 826 ~~~~~~~~~~~~~l~--------------------~l~~~g~~~~~~~~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~ 885 (1230)
T 1u6g_C 826 KNSRSTDSIRLLALL--------------------SLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISV 885 (1230)
T ss_dssp TTTTCCHHHHHHHHH--------------------HHHHHHHHSCCCSCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHH--------------------HHHHhcccCCCcccccHHHHHHHHhCCCCHHHHHHHHHHhHHHhc
Confidence 43 23333333332 335666655555457799999999999999999999999999999
Q ss_pred hhhhhhHHHHHHhhhcCchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhc
Q psy14676 1346 GNLQQYVPFVLKEIENQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTL 1425 (1827)
Q Consensus 1346 ~~l~~~LP~Il~~i~~~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~ 1425 (1827)
++++.|+|.|++.+.++++.|+..+++|+|++.+. +...+.||.++||+.|++++++.++++|+.+|+|||+|+.
T Consensus 886 ~~~~~~lp~ll~~l~~~~~~~~~~l~al~e~i~~~-----~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~ 960 (1230)
T 1u6g_C 886 GNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSA-----SVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTL 960 (1230)
T ss_dssp HTHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHSS-----CSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhccchhhHHHHHHHHHHHhcC-----ChhhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhc
Confidence 99999999999999887888999999999999742 2567899999999999999988889999999999999999
Q ss_pred cCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhc
Q psy14676 1426 IDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLE 1505 (1827)
Q Consensus 1426 ~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~ 1505 (1827)
.+|+.++|.|.+.++++++.+|.+++.++++++.+.+..+++.+ ..+++.|+++++
T Consensus 961 ~~~~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l------------------------~~~~~~ll~~l~ 1016 (1230)
T 1u6g_C 961 IDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLL------------------------KNCIGDFLKTLE 1016 (1230)
T ss_dssp SSGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHH------------------------HHHSTTTHHHHS
T ss_pred cChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCchhhHHHH------------------------HHHHHHHHHhcC
Confidence 99999999999999999999999999999999988766655544 356688888999
Q ss_pred CCchHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhhhhccCCCCcccchhhhhh
Q psy14676 1506 DKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRNSSSNMKIDTLAFTH 1585 (1827)
Q Consensus 1506 D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~~~p~li~~~~~~~~~ 1585 (1827)
|+++ +||+.|+.+|++++|++|+++ +
T Consensus 1017 d~~~----------------------------------------------~vr~~a~~~l~~~~~~~~~~~--------~ 1042 (1230)
T 1u6g_C 1017 DPDL----------------------------------------------NVRRVALVTFNSAAHNKPSLI--------R 1042 (1230)
T ss_dssp SSST----------------------------------------------HHHHHHHHHHHHHHHHCGGGT--------G
T ss_pred CCcH----------------------------------------------HHHHHHHHHHHHHHhcChHhH--------H
Confidence 9888 999999999999999999999 9
Q ss_pred hhcccCCcccccccccccCCcchhccccceeeeccCcccccccCchhhhhHHHHHHHHHhhhhccCChHHHHHHHHhhcc
Q psy14676 1586 TLLTTHPPAVFHPHIHILLPPVIIIKTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTCLDRVDMFEFLNHLESGLR 1665 (1827)
Q Consensus 1586 ~~l~~llp~l~~~~~~~~~~~t~~~~~lir~v~mgpfkh~vddgl~~Rk~a~e~~~~ll~~~~~~~~~~~~~~~~~~gl~ 1665 (1827)
++++.++|.|| ++|.+|+||||+|+||||||+||||+++||+||||||+||++|.+++|+.+|+++++.||+
T Consensus 1043 ~~l~~~lp~l~--------~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~~~~~~~gl~ 1114 (1230)
T 1u6g_C 1043 DLLDTVLPHLY--------NETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLK 1114 (1230)
T ss_dssp GGHHHHHHHHH--------HTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHH--------HHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcccC
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHhhChHHHHHHHHHhhHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccCCCCChh
Q psy14676 1666 DHYDIKMLTYLMLARLAQMTPAALLQRLERIVEPLRNTVTLKVKANSVKQEYEKQDELKRSAMRAVAALLTIQDADKNPA 1745 (1827)
Q Consensus 1666 d~~dik~l~~~~l~~l~~~~p~~~~~~l~~l~~~~~~~l~~~~k~~~~kqe~e~~~e~~~s~~r~~~~l~~~~~~~~~~~ 1745 (1827)
|++|||++||+||.||+..+|.++++++|++++|++++|++|+|+||||||+||++|++|||||++.+|.++|++++||+
T Consensus 1115 d~~di~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~~l~~~~~~~~~~~ 1194 (1230)
T 1u6g_C 1115 DHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPL 1194 (1230)
T ss_dssp SCHHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTTSSCSCSSSSS
T ss_pred chHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHHHHhCCCcccChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCchHHHHHHHHhcccCCCCCCCCccccCC
Q psy14676 1746 LNDFVATIKNSPELQTIFDSMQKDSSLSNQQDPHMMDMN 1784 (1827)
Q Consensus 1746 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1784 (1827)
|.+|+++|++||+|+.+|++|++|..+++ .++||.+
T Consensus 1195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 1230 (1230)
T 1u6g_C 1195 MSEFQSQISSNPELAAIFESIQKDSSSTN---LESMDTS 1230 (1230)
T ss_dssp CCCCCHHHHHHHHHTC-----------------------
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhhcCC---ccccccC
Confidence 99999999999999999999999986633 4588864
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-56 Score=640.57 Aligned_cols=1141 Identities=27% Similarity=0.400 Sum_probs=812.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHH
Q psy14676 38 ITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYT 116 (1827)
Q Consensus 38 L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~ 116 (1827)
-++.|++.+.+ +|+++|..|..-|...+..-...+.+ ....+++.+++.|.++++.||..|+.+|+.++..+++..+.
T Consensus 7 ~l~~lL~~l~s-~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~ 85 (1230)
T 1u6g_C 7 HISNLLEKMTS-SDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVE 85 (1230)
T ss_dssp HHHHHHHHTTC-SSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHhcCC-CCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 35677777765 58999999988887765443223333 35589999999999999999999999999999999888888
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchh------hHHhHHHHHHHHHhhccc-CchHHHHHHHHHHHHHHHh
Q psy14676 117 KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHR------FAEHIERVMPLILKYSRE-EDDELREFCLQACEAFVQR 189 (1827)
Q Consensus 117 ~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~------~~p~l~~i~p~l~~~~~~-~~delRe~al~ale~~~~~ 189 (1827)
.+++.++..|.++ +..+|..++.+++.++...+.. ..+|++.++|.+++.+++ ++.++|+.|+.++..++..
T Consensus 86 ~i~~~Ll~~l~d~-~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 86 TIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHTTCS-SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 8888898888654 4578999999999999988764 567899999999999984 7789999999999999999
Q ss_pred CCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHH
Q psy14676 190 CPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLE 269 (1827)
Q Consensus 190 ~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~ 269 (1827)
+|+.+.||++.+++.++..+.. .++.||+.|++||+
T Consensus 165 ~~~~l~~~~~~ll~~l~~~L~~--------------------------------------------~~~~vR~~a~~al~ 200 (1230)
T 1u6g_C 165 QGGLLVNFHPSILTCLLPQLTS--------------------------------------------PRLAVRKRTIIALG 200 (1230)
T ss_dssp TCSSCTTTHHHHHHHHGGGGGC--------------------------------------------SSHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHcC--------------------------------------------CcHHHHHHHHHHHH
Confidence 9999999999999999887631 01479999999999
Q ss_pred HHHHHcCCchhhhHHhhhHHHHhhcCCC-CHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHH
Q psy14676 270 AIIATRRDLIGDMYRLVSPPLIARFKER-EENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLV 348 (1827)
Q Consensus 270 ~l~~~~~~~l~~~~~~v~p~L~~~l~e~-ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv 348 (1827)
.++...++. +++.++|.++..+.+. ++.+|..++.+++.+++..+ ..+.++++.++
T Consensus 201 ~l~~~~~~~---~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~--------------------~~~~~~l~~l~ 257 (1230)
T 1u6g_C 201 HLVMSCGNI---VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAG--------------------HRIGEYLEKII 257 (1230)
T ss_dssp HHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSS--------------------GGGTTSCTTHH
T ss_pred HHHHhcCHH---HHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhH--------------------HHHHHHHHHHH
Confidence 999877643 3566677777766433 35789999999999986532 23566788999
Q ss_pred HHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCccc-CCCCCCCCC
Q psy14676 349 KALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEE-DGEDEGEDD 427 (1827)
Q Consensus 349 ~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~e-d~~~~~~~~ 427 (1827)
|.+++.+.|+++.||..++..++.++...|..+.+|++.++|.+.+.+..++++... .+.+...+.++. +++|+++++
T Consensus 258 ~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~-~d~~~~~~~~~~~~~~~~~~~~ 336 (1230)
T 1u6g_C 258 PLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYD-DEDEDENAMDADGGDDDDQGSD 336 (1230)
T ss_dssp HHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-----------------------------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCc-ccccccccccccccccchhhcc
Confidence 999999999999999999999999999999988999999999999888655544111 000000000000 111111223
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCC
Q psy14676 428 NEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDP 507 (1827)
Q Consensus 428 ~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~ 507 (1827)
++|.+++|..|++|.+|+.++..++.+.|+.|.+|++.++|.+...++|++++||.+++.++..+++..|...+.
T Consensus 337 ~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----- 411 (1230)
T 1u6g_C 337 DEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSW----- 411 (1230)
T ss_dssp --------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC--------
T ss_pred cccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhcccccc-----
Confidence 467777888999999999999999998888899999999999988888888888888888777766554410000
Q ss_pred cccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHH
Q psy14676 508 NQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERK 587 (1827)
Q Consensus 508 ~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~ 587 (1827)
.
T Consensus 412 ----------~--------------------------------------------------------------------- 412 (1230)
T 1u6g_C 412 ----------L--------------------------------------------------------------------- 412 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------c---------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhC
Q psy14676 588 VVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNY 667 (1827)
Q Consensus 588 i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~ 667 (1827)
.. . .
T Consensus 413 ---------~~---------------------~-----~----------------------------------------- 416 (1230)
T 1u6g_C 413 ---------CD---------------------P-----D----------------------------------------- 416 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------cC---------------------c-----c-----------------------------------------
Confidence 00 0 0
Q ss_pred CCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhhhhHHHhhhhcccccchhhhhhHHHHHH
Q psy14676 668 PSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFK 747 (1827)
Q Consensus 668 ~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~llp~ll~l~~s~~~~~~al~~l~~~~~ 747 (1827)
.|. .
T Consensus 417 -------------------------------------------------~~~------------------------~--- 420 (1230)
T 1u6g_C 417 -------------------------------------------------AME------------------------Q--- 420 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------------------ccc------------------------c---
Confidence 000 0
Q ss_pred HHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchhHHHHHHhh
Q psy14676 748 SLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSH 827 (1827)
Q Consensus 748 ~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~ 827 (1827)
.+
T Consensus 421 --------~~---------------------------------------------------------------------- 422 (1230)
T 1u6g_C 421 --------GE---------------------------------------------------------------------- 422 (1230)
T ss_dssp --------CC----------------------------------------------------------------------
T ss_pred --------cc----------------------------------------------------------------------
Confidence 00
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhc
Q psy14676 828 LVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSR 907 (1827)
Q Consensus 828 ~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~ 907 (1827)
.+...+.+|++.++|.+++.+.
T Consensus 423 ----------------------------------------------------------~~~~~~~~~l~~ll~~l~~~l~ 444 (1230)
T 1u6g_C 423 ----------------------------------------------------------TPLTMLQSQVPNIVKALHKQMK 444 (1230)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTTHHHHHHHHHTT
T ss_pred ----------------------------------------------------------chHHHHHHHhhHHHHHHHHHhc
Confidence 0001123457778888888888
Q ss_pred ccchHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccc
Q psy14676 908 EEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTS 987 (1827)
Q Consensus 908 d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~ 987 (1827)
+++..+|..++.+++.++..++..+.+|++.
T Consensus 445 ~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~------------------------------------------------- 475 (1230)
T 1u6g_C 445 EKSVKTRQCCFNMLTELVNVLPGALTQHIPV------------------------------------------------- 475 (1230)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSTTTTGGGHHH-------------------------------------------------
T ss_pred cCCHHHHHHHHHHHHHHHHHchhhhHHHHHH-------------------------------------------------
Confidence 8899999999999998887766555555432
Q ss_pred cchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHhccCC--hhhHHHHHHHHHHHHH-h
Q psy14676 988 TSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNS--ALMRTTHQSNQTFNVI-I 1064 (1827)
Q Consensus 988 ~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~--~~~R~~a~~~L~~l~~-~ 1064 (1827)
++|.+.+.+++.+ ...|..++..+..+.. +
T Consensus 476 -----------------------------------------------ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~ 508 (1230)
T 1u6g_C 476 -----------------------------------------------LVPGIIFSLNDKSSSSNLKIDALSCLYVILCNH 508 (1230)
T ss_dssp -----------------------------------------------HHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSS
T ss_pred -----------------------------------------------HHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhC
Confidence 2333344444433 3678888888885544 4
Q ss_pred ccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhh
Q psy14676 1065 QRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKA 1144 (1827)
Q Consensus 1065 ~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~ 1144 (1827)
.+..+.|| ++.++|.++.++.|++++|+.+|+.+++.+++.+++.+......+.||++.+++.++..+..
T Consensus 509 ~~~~~~~~----------l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~ 578 (1230)
T 1u6g_C 509 SPQVFHPH----------VQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKA 578 (1230)
T ss_dssp CGGGGHHH----------HTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHhH----------HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhc
Confidence 45557777 99999999999999999999999999999999987522222357889999999999999976
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhh
Q psy14676 1145 ADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSF 1224 (1827)
Q Consensus 1145 ~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~ 1224 (1827)
.|.+.+||+.|+.++|.++...|+.+.++++.+++.|.+++.++.+|..++++++.++.+..+.++.+|++++++.+...
T Consensus 579 ~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~ 658 (1230)
T 1u6g_C 579 ADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASF 658 (1230)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999998777778899999999999999
Q ss_pred hcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccch------hhH
Q psy14676 1225 LRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVE------PAA 1298 (1827)
Q Consensus 1225 Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~------~~i 1298 (1827)
++++++.+|.+++.+|+.++.+++..++.+.+..++..+.++++++|.++...++.+|+.+++..|..... +.+
T Consensus 659 l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~ 738 (1230)
T 1u6g_C 659 LRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNEL 738 (1230)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHH
Confidence 99999999999999999999999888877778888888889999999999999999999999876643311 111
Q ss_pred Hhhh-----------------hhcccccC-CCchhhHHHHHHHhcCC-----CCHhHHHHHHHHHhhhhhh---hhhhhH
Q psy14676 1299 ASIL-----------------PQIGRHTD-LTSVADLKQVILNAFTP-----TSEEVKSAASYTLGSIAVG---NLQQYV 1352 (1827)
Q Consensus 1299 ~~~l-----------------geiG~~~~-~~~~~~l~~~~l~~~~~-----~s~eVr~aAa~aLG~i~~~---~l~~~L 1352 (1827)
...+ ..++...+ ....+.+++.+++.... ..+.++..++..+|.+... ....++
T Consensus 739 ~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 818 (1230)
T 1u6g_C 739 IGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVV 818 (1230)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHH
T ss_pred HHHHcCcccchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhHHHH
Confidence 1111 11111110 01123344444333222 2345778888888875432 112445
Q ss_pred HHHHHhhhc---CchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCC
Q psy14676 1353 PFVLKEIEN---QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPS 1429 (1827)
Q Consensus 1353 P~Il~~i~~---~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~ 1429 (1827)
+.+++.+++ ....+...+.+++|+..+. .+.++ +++.+.+++.+.+..+++|..|+.|||.++..++.
T Consensus 819 ~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~--------~~~~~-~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~~~ 889 (1230)
T 1u6g_C 819 GQFIQDVKNSRSTDSIRLLALLSLGEVGHHI--------DLSGQ-LELKSVILEAFSSPSEEVKSAASYALGSISVGNLP 889 (1230)
T ss_dssp TTTTTTTTTTTCCHHHHHHHHHHHHHHHHHS--------CCCSC-THHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHhCCCCccHHHHHHHHHHHHHhcccC--------CCccc-ccHHHHHHHHhCCCCHHHHHHHHHHhHHHhccCHH
Confidence 555555543 2345677778888885421 13332 55678888888888999999999999999988888
Q ss_pred cchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCch
Q psy14676 1430 NLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNG 1509 (1827)
Q Consensus 1430 ~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~ 1509 (1827)
.++|.+.+.+.+. +..|...++|++..+...+.. .+. .+...+++.++..+.+.+.
T Consensus 890 ~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~~---~~~--------------------~~~~~i~~~L~~~~~~~~~ 945 (1230)
T 1u6g_C 890 EYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVV---GLK--------------------PYVENIWALLLKHCECAEE 945 (1230)
T ss_dssp HHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCST---TTH--------------------HHHHHHHHHHTTCCCCSST
T ss_pred HHHHHHHHHHhcc-chhhHHHHHHHHHHHhcCChh---hHH--------------------hhHHHHHHHHHHHhcCcch
Confidence 9999999999765 678999999999999753211 111 1335788999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhhhhccCCCCcccchhhhhhhhcc
Q psy14676 1510 EVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRNSSSNMKIDTLAFTHTLLT 1589 (1827)
Q Consensus 1510 ~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~~~p~li~~~~~~~~~~~l~ 1589 (1827)
.+|..+++|+|.|++..+.. ++..+...+.+++ ..+|..++.++.....+.|.-+ .++++
T Consensus 946 ~~r~~~a~~lg~l~~~~~~~----l~p~l~~~l~~~~--------~~~R~~~~~~l~~~~~~~~~~~--------~~~l~ 1005 (1230)
T 1u6g_C 946 GTRNVVAECLGKLTLIDPET----LLPRLKGYLISGS--------SYARSSVVTAVKFTISDHPQPI--------DPLLK 1005 (1230)
T ss_dssp THHHHHHHHHHHHHHSSGGG----THHHHTTTSSSSC--------HHHHHHHHHHTGGGCCSSCCTH--------HHHHH
T ss_pred hhHHHHHHHHhhhhccChHH----HHHHHHHHhcCCC--------HHHHHHHHHHHHHHHccCchhh--------HHHHH
Confidence 99999999999999875533 3333333333332 2789999999988887777666 66777
Q ss_pred cCCcccccccccccCCcchhccccceeeeccCcccccccCchhhhhHHHHHHHHHhhhhccC--ChHHHHHHHHhhcc--
Q psy14676 1590 THPPAVFHPHIHILLPPVIIIKTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTCLDRV--DMFEFLNHLESGLR-- 1665 (1827)
Q Consensus 1590 ~llp~l~~~~~~~~~~~t~~~~~lir~v~mgpfkh~vddgl~~Rk~a~e~~~~ll~~~~~~~--~~~~~~~~~~~gl~-- 1665 (1827)
.++|.++. .+ -|.-.++|.+|..|+.++.....+-+ .+..+++.+...+.
T Consensus 1006 ~~~~~ll~----------~l----------------~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~ 1059 (1230)
T 1u6g_C 1006 NCIGDFLK----------TL----------------EDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVR 1059 (1230)
T ss_dssp HHSTTTHH----------HH----------------SSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCC
T ss_pred HHHHHHHH----------hc----------------CCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHhccc
Confidence 77776661 11 25557899999999999998765543 35677777776653
Q ss_pred ----------------c-hhhHHHHHHHHHHHHHhhChHHHHHHHHHhhHHHHhhhccccccchhhHHHHHHHHHHHHHH
Q psy14676 1666 ----------------D-HYDIKMLTYLMLARLAQMTPAALLQRLERIVEPLRNTVTLKVKANSVKQEYEKQDELKRSAM 1728 (1827)
Q Consensus 1666 ----------------d-~~dik~l~~~~l~~l~~~~p~~~~~~l~~l~~~~~~~l~~~~k~~~~kqe~e~~~e~~~s~~ 1728 (1827)
| --++|.-++-++.+|...|+..+ .+..+.+.|-..| +++ +|.+--+.
T Consensus 1060 ~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i--~~~~~~~~~~~gl----~d~---------~di~~~~~ 1124 (1230)
T 1u6g_C 1060 KELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRL--DIFEFLNHVEDGL----KDH---------YDIKMLTF 1124 (1230)
T ss_dssp GGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSS--CHHHHHHHHHHTT----SSC---------HHHHHHHH
T ss_pred HHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHccc----Cch---------HHHHHHHH
Confidence 2 23899999999999999997766 2666777666665 332 47777788
Q ss_pred HHHHHHhcccCCCCChh---HHHHHHHH-hCC---c----hH---HHHHHHHhcccCCCCCCCCccccCCCCcchhhhhh
Q psy14676 1729 RAVAALLTIQDADKNPA---LNDFVATI-KNS---P----EL---QTIFDSMQKDSSLSNQQDPHMMDMNKNPALNDFVA 1794 (1827)
Q Consensus 1729 r~~~~l~~~~~~~~~~~---~~~~~~~~-~~~---~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1794 (1827)
+.+..|....+....++ +.+-+..+ ..+ . ++ .++..++.+=...-+ ..++.++||.+++|+.
T Consensus 1125 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~~l~----~~~~~~~~~~~~~~~~ 1200 (1230)
T 1u6g_C 1125 LMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALL----TIPEAEKSPLMSEFQS 1200 (1230)
T ss_dssp HHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTT----SSCSCSSSSSCCCCCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHHHH----hCCCcccChHHHHHHH
Confidence 88888887766644343 33333332 111 1 11 222222222221111 3456678999999999
Q ss_pred hhcCCchhhHHHhhhccCCCCccCCCCCCCCCC
Q psy14676 1795 TIKNSPELQTIFDSMQKDSSLSNQQDPHMMDMS 1827 (1827)
Q Consensus 1795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1827 (1827)
.||++|+++..|+++++|++- ...++||.|
T Consensus 1201 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 1230 (1230)
T 1u6g_C 1201 QISSNPELAAIFESIQKDSSS---TNLESMDTS 1230 (1230)
T ss_dssp HHHHHHHHTC-----------------------
T ss_pred HHHhCHHHHHHHHHHHHHhhc---CCccccccC
Confidence 999999999999999999755 344477754
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=409.71 Aligned_cols=685 Identities=13% Similarity=0.163 Sum_probs=507.0
Q ss_pred CchHHHHHHHHHHHHHHHhhC-CCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCC---CCchhH
Q psy14676 3 SDKEQLRDISSIGLKTVISEL-PLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGAL---LPSFHF 78 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~l-p~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~---l~~~~~ 78 (1827)
++...+|...+.++.++.... |... ...++|.|++.+.++.++.+|..++.+|+.+++.+++. +.++..
T Consensus 106 ~~~~~vr~~~~~~l~~i~~~~~p~~~-------w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~ 178 (861)
T 2bpt_A 106 SIEPRIANAAAQLIAAIADIELPHGA-------WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSN 178 (861)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHGGGTC-------CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHH
T ss_pred CCchHHHHHHHHHHHHHHHhhCcccc-------cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHH
Confidence 345678888899998887764 4222 67899999999976448899999999999999998876 466788
Q ss_pred HHHHHHhhhcCCC--CHHHHHHHHHHHHHHHHhhchhH-----HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhch
Q psy14676 79 VILTALLPQLSSP--RQAVRKRTIVALSHLVMSCNLQL-----YTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGH 151 (1827)
Q Consensus 79 ~il~~ll~~L~~~--~~~VRk~Ai~aL~~l~~~~~~~~-----~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~ 151 (1827)
.+++.+...+.++ ++.||..|+.|++.++..+.... ...+++.+...+ .+.+..+|+.++++++.++...++
T Consensus 179 ~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~~r~~a~~~l~~l~~~~~~ 257 (861)
T 2bpt_A 179 NILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEAT-QAEDIEVQAAAFGCLCKIMSKYYT 257 (861)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHH-TCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987 89999999999999876654321 122344444333 446789999999999999999999
Q ss_pred hhHHhHH-HHHHHHHhhcccCchHHHHHHHHHHHHHHHh-----------------CCCccccchHHHHHHHHHHhccCC
Q psy14676 152 RFAEHIE-RVMPLILKYSREEDDELREFCLQACEAFVQR-----------------CPKEITPHIQSITELCLTYITYDP 213 (1827)
Q Consensus 152 ~~~p~l~-~i~p~l~~~~~~~~delRe~al~ale~~~~~-----------------~p~e~~p~l~~ii~~ll~~l~~dp 213 (1827)
.|.+|+. .+++++...+.+.++++|..|+.++..++.. ++..+.++++.++|.++..+.+..
T Consensus 258 ~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~ 337 (861)
T 2bpt_A 258 FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN 337 (861)
T ss_dssp GCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999 9999999999988999999998888877765 344456788999999998875410
Q ss_pred CCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhh
Q psy14676 214 NYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIAR 293 (1827)
Q Consensus 214 n~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~ 293 (1827)
+| ++|..|.+|++++.+|+.++...++ .+++.++|.+.+.
T Consensus 338 ---------------------------~d----------~~d~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~ 377 (861)
T 2bpt_A 338 ---------------------------ED----------PEDDDWNVSMSAGACLQLFAQNCGN---HILEPVLEFVEQN 377 (861)
T ss_dssp ---------------------------CC-----------CCCCCHHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHH
T ss_pred ---------------------------cc----------cccccCcHHHHHHHHHHHHHHHccH---hHHHHHHHHHHHH
Confidence 00 0122489999999999999998774 4577889999999
Q ss_pred cCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHH
Q psy14676 294 FKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLREL 373 (1827)
Q Consensus 294 l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L 373 (1827)
+.+.+|.+|.+++.+++.+++.. ....+.++++.+++.+.+.++|+++.||.++...++.+
T Consensus 378 l~~~~~~~r~~a~~~l~~i~~~~-------------------~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l 438 (861)
T 2bpt_A 378 ITADNWRNREAAVMAFGSIMDGP-------------------DKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRI 438 (861)
T ss_dssp TTCSSHHHHHHHHHHHHHTSSSS-------------------CHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred cCCCChhHHHHHHHHHHHHHcCC-------------------CHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999887321 02456788999999999999999999999998899999
Q ss_pred HHhCcccc--cCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHH
Q psy14676 374 VQTLPGCL--APSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAI 451 (1827)
Q Consensus 374 ~~vl~~~l--~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l 451 (1827)
+..++..+ .+|++.++|.+...+. +. +++|..|+.++..+
T Consensus 439 ~~~~~~~~~~~~~~~~~l~~l~~~l~-------------------------------------~~-~~v~~~a~~al~~l 480 (861)
T 2bpt_A 439 ADSVAESIDPQQHLPGVVQACLIGLQ-------------------------------------DH-PKVATNCSWTIINL 480 (861)
T ss_dssp HHHHGGGSCTTTTHHHHHHHHHHHHT-------------------------------------SC-HHHHHHHHHHHHHH
T ss_pred HHHhhhhcCCHHHHHHHHHHHHHHhc-------------------------------------cC-hHHHHHHHHHHHHH
Confidence 99887654 6799999999999883 12 78999999999999
Q ss_pred HHHhh----hhhhhhHHhhhhhHHHhhc--chhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhh
Q psy14676 452 IATRR----DLIGDMYRLVSPPLIARFK--EREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVP 525 (1827)
Q Consensus 452 ~~~~~----~~f~~~~~~l~~~L~~~~~--d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 525 (1827)
++..+ ..+.||++.+++.++..+. |.++++|..++.+++.+++..|.. +.
T Consensus 481 ~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~------------------------~~ 536 (861)
T 2bpt_A 481 VEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT------------------------VA 536 (861)
T ss_dssp HHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG------------------------GH
T ss_pred HHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh------------------------hH
Confidence 98875 6788999999999999997 555899999999999999876510 00
Q ss_pred HHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhh----cchh
Q psy14676 526 SLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLE----DKNG 601 (1827)
Q Consensus 526 ~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~----D~~~ 601 (1827)
.. ...++|.+.+.+.+. + ... . ..+. +...
T Consensus 537 ~~---------------~~~l~~~l~~~l~~~---------------~-----~~~----~-------~i~~~~~~~~~~ 570 (861)
T 2bpt_A 537 ET---------------SASISTFVMDKLGQT---------------M-----SVD----E-------NQLTLEDAQSLQ 570 (861)
T ss_dssp HH---------------HHHHHHHHHHHHHHH---------------T-----TSC----G-------GGCCHHHHHHHH
T ss_pred HH---------------HHHHHHHHHHHHHHH---------------H-----hhh----c-------ccCChhhHHHHH
Confidence 00 111112111111000 0 000 0 0001 2234
Q ss_pred hHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHH
Q psy14676 602 EVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTV 681 (1827)
Q Consensus 602 eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~ 681 (1827)
++|..+..+++.+++.++. ++.+|+
T Consensus 571 ~~~~~~~~~l~~l~~~~~~--------~~~~~~----------------------------------------------- 595 (861)
T 2bpt_A 571 ELQSNILTVLAAVIRKSPS--------SVEPVA----------------------------------------------- 595 (861)
T ss_dssp HHHHHHHHHHHHHHHHCGG--------GTGGGH-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhh--------hhHHHH-----------------------------------------------
Confidence 5566666666666544442 011111
Q ss_pred HhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhhhhHHHhhhhcccccchhhhhhHHHHHHHHHhhhCCCCCHHH
Q psy14676 682 ELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSE 761 (1827)
Q Consensus 682 ~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~llp~ll~l~~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ 761 (1827)
+.++|.+++
T Consensus 596 -------------------------------------~~l~~~l~~---------------------------------- 604 (861)
T 2bpt_A 596 -------------------------------------DMLMGLFFR---------------------------------- 604 (861)
T ss_dssp -------------------------------------HHHHHHHHH----------------------------------
T ss_pred -------------------------------------HHHHHHHHH----------------------------------
Confidence 111111110
Q ss_pred HHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHH
Q psy14676 762 LLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVAL 841 (1827)
Q Consensus 762 ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL 841 (1827)
.
T Consensus 605 -----------------------------------------------~-------------------------------- 605 (861)
T 2bpt_A 605 -----------------------------------------------L-------------------------------- 605 (861)
T ss_dssp -----------------------------------------------H--------------------------------
T ss_pred -----------------------------------------------H--------------------------------
Confidence 0
Q ss_pred HHHHhhhcHHHHHHHHHHHHhhhcCCCCh-hhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHH
Q psy14676 842 SHLVMSCNLQLYTKLIDFLLEGLTTNKST-STNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQA 920 (1827)
Q Consensus 842 ~~l~~~~~~~~~~~l~~~l~~~l~~~~~~-~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~A 920 (1827)
+. +.++ .+|+.++.+++.++...+..|.+|++.++|.+++.+.+++.++|..++.+
T Consensus 606 ----------------------l~-~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~ 662 (861)
T 2bpt_A 606 ----------------------LE-KKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGF 662 (861)
T ss_dssp ----------------------HH-STTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred ----------------------Hc-cCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 00 0112 56777788888889999999999999999999999988888899999888
Q ss_pred HHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHH
Q psy14676 921 CEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPA 1000 (1827)
Q Consensus 921 le~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ 1000 (1827)
++.++..++..+.||++ .
T Consensus 663 l~~l~~~~~~~~~~~~~--------------------------------------------------------------~ 680 (861)
T 2bpt_A 663 IADISNSLEEDFRRYSD--------------------------------------------------------------A 680 (861)
T ss_dssp HHHHHHHTGGGGHHHHH--------------------------------------------------------------H
T ss_pred HHHHHHHhchhccchHH--------------------------------------------------------------H
Confidence 87766655544444432 2
Q ss_pred HHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHhccCC--hhhHHHHHHHHHHHHHhccccccccccchhh
Q psy14676 1001 IWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNS--ALMRTTHQSNQTFNVIIQRNDIHNHNEETSF 1078 (1827)
Q Consensus 1001 ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~--~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~ 1078 (1827)
+ +|.+.+.+++++ ...|..++.+++.++.+.+..|.||
T Consensus 681 l----------------------------------~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~------ 720 (861)
T 2bpt_A 681 M----------------------------------MNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPY------ 720 (861)
T ss_dssp H----------------------------------HHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHH------
T ss_pred H----------------------------------HHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHH------
Confidence 2 233334444432 6788889999998888888888888
Q ss_pred hhhhhhhhhHHHHHhhcCCc-----------hhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCC
Q psy14676 1079 IYSFYYFLLSPVIASVGDNF-----------YKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADI 1147 (1827)
Q Consensus 1079 ~~~~l~~Lip~l~~~l~D~~-----------~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~ 1147 (1827)
++.++|.++..+.... ..+|..++.+++.++..+.. ....+.+|+..+++.+...+. |.
T Consensus 721 ----l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~----~~~~~~~~~~~i~~~l~~~~~--d~ 790 (861)
T 2bpt_A 721 ----LNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHD----KPEALFPYVGTIFQFIAQVAE--DP 790 (861)
T ss_dssp ----HHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTT----CHHHHGGGHHHHHHHHHHHHH--CH
T ss_pred ----HHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHHHHHHHc--Cc
Confidence 9999999999887321 46888999999999987642 124578999999998888775 42
Q ss_pred ----CHHHHHHHHHHHHHHHHHh-hhhhhhhhh-hhHHHHHHhhhh--h---hhHHHHHHHHHHHh
Q psy14676 1148 ----DQEVKERAISCMGQIICNL-GDYLKSELP-VCLPILLDRLRN--E---ITRLTTVKALTKIA 1202 (1827)
Q Consensus 1148 ----d~eVre~Ai~alg~l~~~~-g~~l~~~l~-~lL~~Ll~~L~~--e---~tR~~av~al~~ia 1202 (1827)
+.+||+.|+.++|.++..+ |..+.++++ .+++.|++.++. + .+|..|.-|++.+.
T Consensus 791 ~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~ 856 (861)
T 2bpt_A 791 QLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQK 856 (861)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 7899999999999999999 888899999 899999998873 2 23555555555553
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-36 Score=409.80 Aligned_cols=650 Identities=13% Similarity=0.186 Sum_probs=486.1
Q ss_pred chHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCC-----chhH
Q psy14676 4 DKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLP-----SFHF 78 (1827)
Q Consensus 4 ~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~-----~~~~ 78 (1827)
....+|..++.++..+...-++.. ...++|.|.+.+.++ ++.+|+.++.+|+.+++.+++.+. .+..
T Consensus 102 ~~~~vr~~~a~~i~~ia~~~~~~~-------wp~ll~~L~~~l~~~-~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~ 173 (852)
T 4fdd_A 102 SSPLIRATVGILITTIASKGELQN-------WPDLLPKLCSLLDSE-DYNTCEGAFGALQKICEDSAEILDSDVLDRPLN 173 (852)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTTTT-------CTTHHHHHHHHHSCS-SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCccc-------cHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhHHHhchhhhcchHH
Confidence 445789999999999988765433 778999999999764 789999999999999999987542 3367
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhH---HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHH
Q psy14676 79 VILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQL---YTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAE 155 (1827)
Q Consensus 79 ~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~---~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p 155 (1827)
.+++.+++.|+++++.||..|+.|++.++...++.. +..+++.++..+. ++++.+|+.++++++.+++..++.+.+
T Consensus 174 ~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~-d~~~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 174 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAG-DEEPEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 899999999999999999999999998887655432 3455555555544 467899999999999999999999999
Q ss_pred hHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCC-----CccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCC
Q psy14676 156 HIERVMPLILKYSREEDDELREFCLQACEAFVQRCP-----KEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGG 230 (1827)
Q Consensus 156 ~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p-----~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~ 230 (1827)
|++.+++++++.+++.++++|..| +++|...|. +.+.||++.++|.+++.|.|. ++|.+|..+
T Consensus 253 ~l~~l~~~l~~~~~~~~~~vr~~a---~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~-----e~d~~~~~~---- 320 (852)
T 4fdd_A 253 HMHNIVEYMLQRTQDQDENVALEA---CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYS-----DIDIILLKG---- 320 (852)
T ss_dssp GHHHHHHHHHHHHTCSSHHHHHHH---HHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCC-----HHHHHHHHC----
T ss_pred HHHHHHHHHHHHccCCcHHHHHHH---HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCc-----HhHHHHhcC----
Confidence 999999999999998888998655 455555543 236789999999999999873 222222100
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHH
Q psy14676 231 EGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYM 310 (1827)
Q Consensus 231 ~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~ 310 (1827)
|. ++ |+++||+...|+||++|+++|+.++...|+ .+++.++|.+...+++.+|.+|.+++.+++
T Consensus 321 ---d~------~e----d~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~~l~~~l~~~l~~~~~~~R~aa~~alg 384 (852)
T 4fdd_A 321 ---DV------EG----GSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLKELLFHHEWVVKESGILVLG 384 (852)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred ---Cc------cc----ccccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 00 00 011112226799999999999999998774 467789999999999999999999999999
Q ss_pred HHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcc-cccCchhhHH
Q psy14676 311 ALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPG-CLAPSLPALI 389 (1827)
Q Consensus 311 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~-~l~~~l~~Ll 389 (1827)
.+.+ ++...+.++++.+++.+.+.++|++++||.++...++.++..++. ...+|+..++
T Consensus 385 ~i~~--------------------~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll 444 (852)
T 4fdd_A 385 AIAE--------------------GCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLM 444 (852)
T ss_dssp HTTT--------------------TTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHH
T ss_pred HHHh--------------------cchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 8873 234566788999999999999999999999888899999987765 4578999999
Q ss_pred HHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhh
Q psy14676 390 PDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPP 469 (1827)
Q Consensus 390 p~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~ 469 (1827)
|.+...+. |.+|++|..|+.++..+++..+..+.||++.+++.
T Consensus 445 ~~L~~~L~-------------------------------------d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~ 487 (852)
T 4fdd_A 445 TELLKRIL-------------------------------------DSNKRVQEAACSAFATLEEEACTELVPYLAYILDT 487 (852)
T ss_dssp HHHHHHHT-------------------------------------CSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHH
T ss_pred HHHHHHHh-------------------------------------CCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHH
Confidence 99999983 23688999999999999999887788888877776
Q ss_pred HHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHH
Q psy14676 470 LIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLAL 549 (1827)
Q Consensus 470 L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~ 549 (1827)
++..++...+.
T Consensus 488 L~~~l~~~~~~--------------------------------------------------------------------- 498 (852)
T 4fdd_A 488 LVFAFSKYQHK--------------------------------------------------------------------- 498 (852)
T ss_dssp HHHHHHHCCHH---------------------------------------------------------------------
T ss_pred HHHHHHHhChH---------------------------------------------------------------------
Confidence 66655422111
Q ss_pred HHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCccccc
Q psy14676 550 LRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRID 629 (1827)
Q Consensus 550 l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~d 629 (1827)
....+..+++.+++..+.. +
T Consensus 499 -----------------------------------------------------~~~~~~~ai~~l~~~~~~~----~--- 518 (852)
T 4fdd_A 499 -----------------------------------------------------NLLILYDAIGTLADSVGHH----L--- 518 (852)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHHHHGGG----G---
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHHHhhhh----h---
Confidence 0111222233232222210 0
Q ss_pred ccccccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccC
Q psy14676 630 LRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQ 709 (1827)
Q Consensus 630 l~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~ 709 (1827)
.
T Consensus 519 --------------------------------------~----------------------------------------- 519 (852)
T 4fdd_A 519 --------------------------------------N----------------------------------------- 519 (852)
T ss_dssp --------------------------------------C-----------------------------------------
T ss_pred --------------------------------------c-----------------------------------------
Confidence 0
Q ss_pred CCccchhhhhhhhHHHhhhhcccccchhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHH
Q psy14676 710 PNALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVA 789 (1827)
Q Consensus 710 ~~~~~~~~~~~llp~ll~l~~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g 789 (1827)
-.+.++.++|.+++ .|
T Consensus 520 ----~~~~~~~l~p~l~~-----------------~~------------------------------------------- 535 (852)
T 4fdd_A 520 ----KPEYIQMLMPPLIQ-----------------KW------------------------------------------- 535 (852)
T ss_dssp ----CHHHHHHHHHHHHH-----------------HH-------------------------------------------
T ss_pred ----cHHHHHHHHHHHHH-----------------HH-------------------------------------------
Confidence 00011222222221 00
Q ss_pred HHHHHhhhhhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcCCCC
Q psy14676 790 ALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKS 869 (1827)
Q Consensus 790 ~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~~~~ 869 (1827)
.. + .+.+
T Consensus 536 ------------------~~------------------------------------------------------l-~d~~ 542 (852)
T 4fdd_A 536 ------------------NM------------------------------------------------------L-KDED 542 (852)
T ss_dssp ------------------HH------------------------------------------------------S-CTTC
T ss_pred ------------------Hh------------------------------------------------------c-cccc
Confidence 00 0 0112
Q ss_pred hhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhccc-----------------chHHHHHHHHHHHHHHhhCCCcc
Q psy14676 870 TSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREE-----------------DDELREFCLQACEAFVQRCPKEI 932 (1827)
Q Consensus 870 ~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~-----------------~~~vre~al~Ale~~v~~~~~~i 932 (1827)
+..+ .++.+++.++...|..|.||++.++|.+++.+++. +.+++..++.+++.++...+.++
T Consensus 543 ~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~ 621 (852)
T 4fdd_A 543 KDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNI 621 (852)
T ss_dssp TTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhH
Confidence 2333 67888999999999999999999999888776531 22233333333333332222222
Q ss_pred ccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhcc
Q psy14676 933 TPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQ 1012 (1827)
Q Consensus 933 ~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~ 1012 (1827)
.||+.
T Consensus 622 ~~~~~--------------------------------------------------------------------------- 626 (852)
T 4fdd_A 622 EQLVA--------------------------------------------------------------------------- 626 (852)
T ss_dssp HHHHH---------------------------------------------------------------------------
T ss_pred HHHhc---------------------------------------------------------------------------
Confidence 22210
Q ss_pred ccchhhHHHHHHhhhcccCCCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHH
Q psy14676 1013 EEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIA 1092 (1827)
Q Consensus 1013 e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~ 1092 (1827)
.+.++|.+.+.+.++++.+|+.++.+++.++.+.+..+.+| ++.++|.+..
T Consensus 627 -------------------~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~----------l~~~lp~l~~ 677 (852)
T 4fdd_A 627 -------------------RSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC----------IADFMPILGT 677 (852)
T ss_dssp -------------------TCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGG----------HHHHHHHHHH
T ss_pred -------------------CCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHH----------HHHHHHHHHH
Confidence 13467777788888888999999999999999999999999 9999999999
Q ss_pred hhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhh
Q psy14676 1093 SVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKS 1172 (1827)
Q Consensus 1093 ~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~ 1172 (1827)
.+.++.+.++..|++++|.++..+. .++.||+..+++.++..+.+.+....+++.|+.++|.+....++.+.|
T Consensus 678 ~l~~~~~~v~~~a~~alg~i~~~~~-------~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~ 750 (852)
T 4fdd_A 678 NLNPEFISVCNNATWAIGEISIQMG-------IEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAP 750 (852)
T ss_dssp TCCTTSHHHHHHHHHHHHHHHHHHG-------GGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HcCccchHHHHHHHHHHHHHHHHhh-------HhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCc
Confidence 9999999999999999999998874 468899999999999999866667899999999999999998888889
Q ss_pred hhhhhHHHHHHhhhh---hhhHHHHHHHHHHHhcC
Q psy14676 1173 ELPVCLPILLDRLRN---EITRLTTVKALTKIAAS 1204 (1827)
Q Consensus 1173 ~l~~lL~~Ll~~L~~---e~tR~~av~al~~ia~~ 1204 (1827)
+++.+++.++..|.+ ...|..|.+++..+...
T Consensus 751 ~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~ 785 (852)
T 4fdd_A 751 MLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISV 785 (852)
T ss_dssp GHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 999999999999853 33499999999998864
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=396.47 Aligned_cols=762 Identities=12% Similarity=0.114 Sum_probs=559.9
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhh------------c
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQ-EDVSVQLEALDILSDLLSR------------F 69 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~-~~~~v~~~al~iL~~l~~~------------~ 69 (1827)
+.+.+.|.-+.-.|+.+-..- .....+.|++.+.+. .++.+|.-|.-.|...+.. +
T Consensus 16 s~d~~~r~~Ae~~L~~~~~~~-----------~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~ 84 (861)
T 2bpt_A 16 SPDQNIRLTSETQLKKLSNDN-----------FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRW 84 (861)
T ss_dssp CSSHHHHHHHHHHHHHHHHHC-----------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHhhC-----------HHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhH
Confidence 344556666666666654321 123445666666543 4789999998888876532 1
Q ss_pred cCCCCc-hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Q psy14676 70 GALLPS-FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNL-QLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICR 147 (1827)
Q Consensus 70 ~~~l~~-~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~-~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~ 147 (1827)
...+.+ ....+.+.+++.|.++++.||..+..+++.++....+ ..+..+++.+++.+.++.++.+|..++.+++.+++
T Consensus 85 ~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~ 164 (861)
T 2bpt_A 85 ITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCE 164 (861)
T ss_dssp HHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 111333 4557888899999999999999999999999987544 46788899999988764368899999999999999
Q ss_pred Hhchh---hHHhHHHHHHHHHhhcccC--chHHHHHHHHHHHHHHHhCCCccc--cchHHHHHHHHHHhccCCCCCcccc
Q psy14676 148 QAGHR---FAEHIERVMPLILKYSREE--DDELREFCLQACEAFVQRCPKEIT--PHIQSITELCLTYITYDPNYNYEDE 220 (1827)
Q Consensus 148 ~~~~~---~~p~l~~i~p~l~~~~~~~--~delRe~al~ale~~~~~~p~e~~--p~l~~ii~~ll~~l~~dpn~~~~dd 220 (1827)
..+.. +.+|.+.+++.+.+.+.++ +.++|..++.++..++...+..+. .+.+.+++.+.+.+.
T Consensus 165 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~---------- 234 (861)
T 2bpt_A 165 SADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQ---------- 234 (861)
T ss_dssp TSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHT----------
T ss_pred cCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhc----------
Confidence 87655 6789999999999988876 789999999998887654432221 112335555544331
Q ss_pred cccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHH-hhhHHHHhhcCCCCH
Q psy14676 221 EEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYR-LVSPPLIARFKEREE 299 (1827)
Q Consensus 221 d~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~-~v~p~L~~~l~e~ee 299 (1827)
+..|++|+.+.++|..++..+++.+.+++. .+++.+...+.+.++
T Consensus 235 ----------------------------------~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 280 (861)
T 2bpt_A 235 ----------------------------------AEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPND 280 (861)
T ss_dssp ----------------------------------CSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSH
T ss_pred ----------------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 113799999999999999999998889998 999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhccc-------CCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhcc-------CCHhHHHH
Q psy14676 300 NVKSDIFHAYMALLKGTRTF-------SPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLRE-------KSIRTRQD 365 (1827)
Q Consensus 300 ~VR~aa~~al~~ll~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d-------~~~~vR~a 365 (1827)
+||..++..+..+++..... ..+| ..+...+.+.++.++|.+++.|++ +++.+|.+
T Consensus 281 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~ 350 (861)
T 2bpt_A 281 KVASMTVEFWSTICEEEIDIAYELAQFPQSP----------LQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMS 350 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCS----------CCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCc----------hhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHH
Confidence 99999999999988653210 0010 001134556778889999888874 34689999
Q ss_pred HHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHH
Q psy14676 366 CLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAA 445 (1827)
Q Consensus 366 ~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~ 445 (1827)
+...+..++..+|. ..++.++|.+.+.++ +.+|++|.+|+
T Consensus 351 a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~-------------------------------------~~~~~~r~~a~ 390 (861)
T 2bpt_A 351 AGACLQLFAQNCGN---HILEPVLEFVEQNIT-------------------------------------ADNWRNREAAV 390 (861)
T ss_dssp HHHHHHHHHHHHGG---GGHHHHHHHHHHHTT-------------------------------------CSSHHHHHHHH
T ss_pred HHHHHHHHHHHccH---hHHHHHHHHHHHHcC-------------------------------------CCChhHHHHHH
Confidence 99999999998873 456788888888872 24699999999
Q ss_pred HHHHHHHHHhh-hhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchh
Q psy14676 446 KCLEAIIATRR-DLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQV 524 (1827)
Q Consensus 446 ~~l~~l~~~~~-~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~ 524 (1827)
.+++.++...+ +.+.++++.++|.++..+.|.++.||..+..+++.+.+.++....
T Consensus 391 ~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----------------------- 447 (861)
T 2bpt_A 391 MAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID----------------------- 447 (861)
T ss_dssp HHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC-----------------------
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC-----------------------
Confidence 99999997765 778899999999999999999999999999888888766541000
Q ss_pred hHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHH
Q psy14676 525 PSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQ 604 (1827)
Q Consensus 525 ~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~ 604 (1827)
...+...+++.++.+++|. .+||
T Consensus 448 --------------------------------------------------------~~~~~~~~l~~l~~~l~~~-~~v~ 470 (861)
T 2bpt_A 448 --------------------------------------------------------PQQHLPGVVQACLIGLQDH-PKVA 470 (861)
T ss_dssp --------------------------------------------------------TTTTHHHHHHHHHHHHTSC-HHHH
T ss_pred --------------------------------------------------------CHHHHHHHHHHHHHHhccC-hHHH
Confidence 0012345667777777776 8899
Q ss_pred HHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhC
Q psy14676 605 NLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELA 684 (1827)
Q Consensus 605 ~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~ 684 (1827)
..|..+++.+++.+++.. . -.+.+|
T Consensus 471 ~~a~~al~~l~~~~~~~~-~---~~l~~~--------------------------------------------------- 495 (861)
T 2bpt_A 471 TNCSWTIINLVEQLAEAT-P---SPIYNF--------------------------------------------------- 495 (861)
T ss_dssp HHHHHHHHHHHHHHSSSS-S---CGGGGG---------------------------------------------------
T ss_pred HHHHHHHHHHHHhccccc-c---hhhHHH---------------------------------------------------
Confidence 888888877765543100 0 000011
Q ss_pred cCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhhhhHHHhhhhcccccchhhhhhHHHHHHHHHhhhCCCCCHHHHHH
Q psy14676 685 PLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLN 764 (1827)
Q Consensus 685 ~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~llp~ll~l~~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll~ 764 (1827)
++.++|.++.
T Consensus 496 ---------------------------------~~~il~~L~~------------------------------------- 505 (861)
T 2bpt_A 496 ---------------------------------YPALVDGLIG------------------------------------- 505 (861)
T ss_dssp ---------------------------------HHHHHHHHHH-------------------------------------
T ss_pred ---------------------------------HHHHHHHHHH-------------------------------------
Confidence 1111111110
Q ss_pred HhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHH
Q psy14676 765 MLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHL 844 (1827)
Q Consensus 765 ~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l 844 (1827)
.
T Consensus 506 --------------------------------------------~----------------------------------- 506 (861)
T 2bpt_A 506 --------------------------------------------A----------------------------------- 506 (861)
T ss_dssp --------------------------------------------H-----------------------------------
T ss_pred --------------------------------------------H-----------------------------------
Confidence 0
Q ss_pred HhhhcHHHHHHHHHHHHhhhcC-CCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhccc--------------
Q psy14676 845 VMSCNLQLYTKLIDFLLEGLTT-NKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREE-------------- 909 (1827)
Q Consensus 845 ~~~~~~~~~~~l~~~l~~~l~~-~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~-------------- 909 (1827)
+.+ +.++.+|..++.+++.++...|..+.+|+..++|.+++.+.+.
T Consensus 507 -------------------l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~ 567 (861)
T 2bpt_A 507 -------------------ANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQ 567 (861)
T ss_dssp -------------------HTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHH
T ss_pred -------------------HhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHH
Confidence 111 2235678888888999999999999999999999999887632
Q ss_pred -chHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhccccc
Q psy14676 910 -DDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTST 988 (1827)
Q Consensus 910 -~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~ 988 (1827)
..++|..++++++.++..++..+.||++.
T Consensus 568 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-------------------------------------------------- 597 (861)
T 2bpt_A 568 SLQELQSNILTVLAAVIRKSPSSVEPVADM-------------------------------------------------- 597 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGTGGGHHH--------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--------------------------------------------------
Confidence 34567777777777776666555555432
Q ss_pred chhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHhccCCh-hhHHHHHHHHHHHHHhccc
Q psy14676 989 SGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSA-LMRTTHQSNQTFNVIIQRN 1067 (1827)
Q Consensus 989 ~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~~-~~R~~a~~~L~~l~~~~~~ 1067 (1827)
++|.+.+.+++.++ ..|+.++.+++.++...+.
T Consensus 598 ----------------------------------------------l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~ 631 (861)
T 2bpt_A 598 ----------------------------------------------LMGLFFRLLEKKDSAFIEDDVFYAISALAASLGK 631 (861)
T ss_dssp ----------------------------------------------HHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGG
T ss_pred ----------------------------------------------HHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhh
Confidence 23333444444445 6788889999988888887
Q ss_pred cccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCC
Q psy14676 1068 DIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADI 1147 (1827)
Q Consensus 1068 ~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~ 1147 (1827)
.+.+| ++.++|.++..++++.+.++..++.+++.+++.+. ..+.||+..+++.++..+.+.+.
T Consensus 632 ~~~~~----------l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-------~~~~~~~~~l~~~l~~~l~~~~~ 694 (861)
T 2bpt_A 632 GFEKY----------LETFSPYLLKALNQVDSPVSITAVGFIADISNSLE-------EDFRRYSDAMMNVLAQMISNPNA 694 (861)
T ss_dssp GGHHH----------HHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG-------GGGHHHHHHHHHHHHHHHHCTTC
T ss_pred hHHHH----------HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc-------hhccchHHHHHHHHHHHhCCccc
Confidence 88888 99999999999999999999999999999998763 46889999999999999985445
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhh-------------hhhHHHHHHHHHHHhcCCC--ccccch
Q psy14676 1148 DQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRN-------------EITRLTTVKALTKIAASPL--RIDLRP 1212 (1827)
Q Consensus 1148 d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~-------------e~tR~~av~al~~ia~~~~--~~dl~p 1212 (1827)
+.++|+.++.++|.++..+|+.+.+|++.++|.+++.+.. ...|..++++++.++.... ...+.+
T Consensus 695 ~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~ 774 (861)
T 2bpt_A 695 RRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFP 774 (861)
T ss_dssp CTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGG
T ss_pred cHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 6889999999999999999999999999999999998874 2348999999999886432 245788
Q ss_pred hhhhhHhhhhhhhcch----hHHHHHHHHHHHHHHHHhC-CCCcChHhHH-HHHHHhhhhcC---CCChhHHHHHHHHHH
Q psy14676 1213 ILTDGIPILGSFLRKN----QRALKLSTLLLLDTLLVNY-PSAISTEMLN-KVTVELAPLVS---ESDLHIAQLTLTLLT 1283 (1827)
Q Consensus 1213 ~~~~~l~~L~~~Lrk~----~r~lR~~al~aL~~L~~~~-~~~l~~~~~~-~ll~~L~~ll~---d~D~~l~~~al~~L~ 1283 (1827)
|++.+++.+...+.+. ++.+|.+++.+|+.++..+ +..+.+- +. .+++.|...+. +.+..++..+--++.
T Consensus 775 ~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~-~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~ 853 (861)
T 2bpt_A 775 YVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQF-YGQDWVIDYIKRTRSGQLFSQATKDTARWARE 853 (861)
T ss_dssp GHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGG-TTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHH-HhcHHHHHHHHHHhhccCCCHHHHHHHHHHHH
Confidence 9999998888888764 7899999999999999998 6655432 23 45555554443 455566666555555
Q ss_pred HHH
Q psy14676 1284 SIA 1286 (1827)
Q Consensus 1284 ~l~ 1286 (1827)
.+.
T Consensus 854 ~~~ 856 (861)
T 2bpt_A 854 QQK 856 (861)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-34 Score=393.11 Aligned_cols=667 Identities=13% Similarity=0.156 Sum_probs=483.1
Q ss_pred HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhcc-CCCCchhHHHHHHHhhhcCCC--CHHHHHHHHHHHHHHHHhh
Q psy14676 35 CRRITGKLSTAIEKQE-DVSVQLEALDILSDLLSRFG-ALLPSFHFVILTALLPQLSSP--RQAVRKRTIVALSHLVMSC 110 (1827)
Q Consensus 35 ~~~L~P~Ll~~l~~~~-~~~v~~~al~iL~~l~~~~~-~~l~~~~~~il~~ll~~L~~~--~~~VRk~Ai~aL~~l~~~~ 110 (1827)
...++|.|++.+.++. ++.+|..++.+|+.+++.+. ..+..+.+.+++.+...+.++ +..||..|+.|++.++...
T Consensus 126 w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (876)
T 1qgr_A 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (876)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4678899999887643 78999999999999999874 334557788999999999887 6899999999999988765
Q ss_pred chhH----HHH-HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHH-HHHHHHHhhcccCchHHHHHHHHHHH
Q psy14676 111 NLQL----YTK-LIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIE-RVMPLILKYSREEDDELREFCLQACE 184 (1827)
Q Consensus 111 ~~~~----~~~-l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~-~i~p~l~~~~~~~~delRe~al~ale 184 (1827)
++.. +.. +++.+...+ ++.+..+|..++++++.+++..++.+.||+. .+++++++.+.++++++|..|+.++.
T Consensus 206 ~~~~~~~~~~~~il~~l~~~~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~ 284 (876)
T 1qgr_A 206 KANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS 284 (876)
T ss_dssp HHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 5331 112 344444433 4456889999999999999999999999999 99999999888888999988887776
Q ss_pred HHHHhC---------------------CCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCC
Q psy14676 185 AFVQRC---------------------PKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDE 243 (1827)
Q Consensus 185 ~~~~~~---------------------p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde 243 (1827)
.++... .....++++.++|.+++.+... ++
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~-----------------------------~~ 335 (876)
T 1qgr_A 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ-----------------------------DE 335 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCC-----------------------------CS
T ss_pred HHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcc-----------------------------cc
Confidence 666531 1123456788999998877531 00
Q ss_pred CCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCC
Q psy14676 244 GEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLT 323 (1827)
Q Consensus 244 ~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~ 323 (1827)
|+||.+|++|++|+.+|+.++...++ .+++.++|.+...+++.+|.+|.+++.+++.+....
T Consensus 336 --------d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~------- 397 (876)
T 1qgr_A 336 --------NDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP------- 397 (876)
T ss_dssp --------SCCTTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS-------
T ss_pred --------cccccccHHHHHHHHHHHHHHHHCcH---hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCC-------
Confidence 01123699999999999999998874 457889999999999999999999999999887321
Q ss_pred CCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCccc--ccCchhhHHHHHHHHhhhhhc
Q psy14676 324 PSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGC--LAPSLPALIPDVTSVAEWDEE 401 (1827)
Q Consensus 324 ~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~--l~~~l~~Llp~i~~~L~~~~~ 401 (1827)
....+.++++.++|.+++.|+|+++.||.+++..++.++...+.. ..+|++.++|.+...+.
T Consensus 398 ------------~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~---- 461 (876)
T 1qgr_A 398 ------------EPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS---- 461 (876)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT----
T ss_pred ------------CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHc----
Confidence 113456789999999999999999999999999999999998875 46899999999999873
Q ss_pred ccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh--------------hhhhhhHHhhh
Q psy14676 402 EGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR--------------DLIGDMYRLVS 467 (1827)
Q Consensus 402 ~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~--------------~~f~~~~~~l~ 467 (1827)
+ .+++|..++.++..++...+ +.+.||++.++
T Consensus 462 ---------------------------------~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il 507 (876)
T 1qgr_A 462 ---------------------------------A-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIV 507 (876)
T ss_dssp ---------------------------------S-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHH
T ss_pred ---------------------------------C-CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHH
Confidence 1 26799999999999998876 34889999999
Q ss_pred hhHHHhhcch---hhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHH
Q psy14676 468 PPLIARFKER---EENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQ 544 (1827)
Q Consensus 468 ~~L~~~~~d~---~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~ 544 (1827)
|.++..+.+. ..++|..++++++.+++..|.. .......
T Consensus 508 ~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~--------------------~~~~~~~------------------ 549 (876)
T 1qgr_A 508 QKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKD--------------------CYPAVQK------------------ 549 (876)
T ss_dssp HHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCST--------------------THHHHHH------------------
T ss_pred HHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchh--------------------hHHHHHH------------------
Confidence 9999998765 4689999999999999876620 0001111
Q ss_pred hHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcch----hhHHHHHHHhhhhHHHHhh-
Q psy14676 545 DCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKN----GEVQNLAVKCLGPLFKALT- 619 (1827)
Q Consensus 545 ~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~----~eV~~~A~~~lg~l~~~~~- 619 (1827)
+++.+.+.+.+ .+. +.. ...++.+ .+++..+..+++.+++.++
T Consensus 550 -l~~~l~~~l~~---------------~~~---~~~-------------~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~ 597 (876)
T 1qgr_A 550 -TTLVIMERLQQ---------------VLQ---MES-------------HIQSTSDRIQFNDLQSLLCATLQNVLRKVQH 597 (876)
T ss_dssp -HHHHHHHHHHH---------------HHT---TTT-------------SCCSTTHHHHHHHHHHHHHHHHHHHHTTSCH
T ss_pred -HHHHHHHHHHH---------------HHH---HHh-------------ccCChhhHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 11111111000 000 000 0001222 3556666666655543333
Q ss_pred hhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHH
Q psy14676 620 KIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTL 699 (1827)
Q Consensus 620 ~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~ 699 (1827)
. ++.+|
T Consensus 598 ~--------~~~~~------------------------------------------------------------------ 603 (876)
T 1qgr_A 598 Q--------DALQI------------------------------------------------------------------ 603 (876)
T ss_dssp H--------HHHTT------------------------------------------------------------------
T ss_pred h--------hhhHH------------------------------------------------------------------
Confidence 1 00111
Q ss_pred HHHhhhhccCCCccchhhhhhhhHHHhhhhcccccchhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhh
Q psy14676 700 TLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQ 779 (1827)
Q Consensus 700 ~~~~~i~~~~~~~~~~~~~~~llp~ll~l~~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~ 779 (1827)
.+.++|.++.++
T Consensus 604 ------------------~~~l~~~l~~~l-------------------------------------------------- 615 (876)
T 1qgr_A 604 ------------------SDVVMASLLRMF-------------------------------------------------- 615 (876)
T ss_dssp ------------------HHHHHHHHHHHC--------------------------------------------------
T ss_pred ------------------HHHHHHHHHHHH--------------------------------------------------
Confidence 122222222111
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHH
Q psy14676 780 AFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDF 859 (1827)
Q Consensus 780 al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~ 859 (1827)
.+
T Consensus 616 -------------------------------~~----------------------------------------------- 617 (876)
T 1qgr_A 616 -------------------------------QS----------------------------------------------- 617 (876)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------Hh-----------------------------------------------
Confidence 00
Q ss_pred HHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhccc-chHHHHHHHHHHHHHHhhCCCcccccccc
Q psy14676 860 LLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREE-DDELREFCLQACEAFVQRCPKEITPHIQS 938 (1827)
Q Consensus 860 l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~-~~~vre~al~Ale~~v~~~~~~i~p~l~~ 938 (1827)
.+..+.+|+.++.+++.++...|..|.||++.++|.++..+.+. ++++|..|+.+++.++..++..+.||+
T Consensus 618 ------~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-- 689 (876)
T 1qgr_A 618 ------TAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFC-- 689 (876)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHH--
T ss_pred ------ccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhH--
Confidence 00002456677788888888889999999999999999999986 788999998888776654443333332
Q ss_pred ccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhh
Q psy14676 939 IGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRN 1018 (1827)
Q Consensus 939 i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~ 1018 (1827)
+.+
T Consensus 690 ------------------------------------------------------------~~i----------------- 692 (876)
T 1qgr_A 690 ------------------------------------------------------------DEV----------------- 692 (876)
T ss_dssp ------------------------------------------------------------HHH-----------------
T ss_pred ------------------------------------------------------------HHH-----------------
Confidence 222
Q ss_pred HHHHHHhhhcccCCCCchHHHHHHhcc--CChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcC
Q psy14676 1019 VVAECLGKLTLIDPSNLLPRLQESLKS--NSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGD 1096 (1827)
Q Consensus 1019 ~a~e~Lg~L~~~~~~~llP~L~~~L~s--~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D 1096 (1827)
+|.+.+.+++ .+...|..++.+++.++...+..+.+| ++.++|.+.+++.+
T Consensus 693 -----------------~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~----------l~~~~~~l~~~~~~ 745 (876)
T 1qgr_A 693 -----------------MQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKY----------LEVVLNTLQQASQA 745 (876)
T ss_dssp -----------------HHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGG----------HHHHHHHHHHHHTC
T ss_pred -----------------HHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHH----------HHHHHHHHHHHHhc
Confidence 2333334433 245688889999998877777778888 99999999998875
Q ss_pred Cc-----------hhhHHHHHHHHHHHHHHhccCCCCC---CCCcchhHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHH
Q psy14676 1097 NF-----------YKITAEALLVLQQFVKVIRPLTSPS---SYDFAPFTSDIYQCTLVRLKAADI--DQEVKERAISCMG 1160 (1827)
Q Consensus 1097 ~~-----------~~V~~eAl~~l~~lv~~l~~~~~~~---~~~~~~~l~~l~~~ll~~L~~~D~--d~eVre~Ai~alg 1160 (1827)
+. ..+|..++.+++.+++.+.+...+. ...+.||+..+++.+..... |. +.+||..|+.++|
T Consensus 746 ~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~vr~~a~~~l~ 823 (876)
T 1qgr_A 746 QVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAG--DEDHTDGVVACAAGLIG 823 (876)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHT--CSCCCHHHHHHHHHHHH
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHH
Confidence 52 3788999999999998876421110 14678999999976654433 44 7899999999999
Q ss_pred HHHHHhhh-hhhhh-hhhhHHHHHH-hhh--hhhhHHHHHHHHHHHhc
Q psy14676 1161 QIICNLGD-YLKSE-LPVCLPILLD-RLR--NEITRLTTVKALTKIAA 1203 (1827)
Q Consensus 1161 ~l~~~~g~-~l~~~-l~~lL~~Ll~-~L~--~e~tR~~av~al~~ia~ 1203 (1827)
.++...|. .+.++ ...+++.+++ .+. +..+|.+|+.++|.++.
T Consensus 824 ~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 824 DLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp HHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHH
Confidence 99999998 88887 5678888888 664 34569999999999874
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-34 Score=391.11 Aligned_cols=777 Identities=13% Similarity=0.160 Sum_probs=551.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCC--CCHHHHHHHHHHHHHHHH-----------
Q psy14676 42 LSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSS--PRQAVRKRTIVALSHLVM----------- 108 (1827)
Q Consensus 42 Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~--~~~~VRk~Ai~aL~~l~~----------- 108 (1827)
+++++.+ ++..+|..|...|.++... ..+.+...+++.|.+ .++.||..|..+|.+.+.
T Consensus 6 ~L~~~~s-~d~~~r~~A~~~L~~~~~~-------~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (876)
T 1qgr_A 6 ILEKTVS-PDRLELEAAQKFLERAAVE-------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (876)
T ss_dssp HHHGGGC-SCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHhcC-CCHHHHHHHHHHHHHHHhc-------ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHH
Confidence 3444443 4889999999999886542 235677777777765 468999999999998762
Q ss_pred ----hhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccC--chHHHHHHHHH
Q psy14676 109 ----SCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREE--DDELREFCLQA 182 (1827)
Q Consensus 109 ----~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~--~delRe~al~a 182 (1827)
.++++....+-..+++.|.++ +..+ ..++++++.+++.... ..++++++|.+++.++++ ++.+|+.++.+
T Consensus 78 ~~w~~l~~~~~~~ik~~ll~~l~~~-~~~~-~~~~~~l~~i~~~~~~--~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~ 153 (876)
T 1qgr_A 78 QRWLAIDANARREVKNYVLHTLGTE-TYRP-SSASQCVAGIACAEIP--VNQWPELIPQLVANVTNPNSTEHMKESTLEA 153 (876)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTTC-CSSS-CHHHHHHHHHHHHHGG--GTCCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHHhCCC-cHHH-HHHHHHHHHHHHhhCc--ccccHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 234444455556677777653 3456 8999999999987532 256889999999999887 88999999999
Q ss_pred HHHHHHhC-CCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHH
Q psy14676 183 CEAFVQRC-PKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVR 261 (1827)
Q Consensus 183 le~~~~~~-p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVR 261 (1827)
+..++..+ |+.+.+|++.+++.+.+.+..+ +.+|.+|
T Consensus 154 l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~------------------------------------------~~~~~vr 191 (876)
T 1qgr_A 154 IGYICQDIDPEQLQDKSNEILTAIIQGMRKE------------------------------------------EPSNNVK 191 (876)
T ss_dssp HHHHHHHSCHHHHGGGHHHHHHHHHHHHSTT------------------------------------------CSCHHHH
T ss_pred HHHHHHhcCHhhHHhHHHHHHHHHHHhhcCC------------------------------------------CCCHHHH
Confidence 99999887 4557889999999999877321 1246899
Q ss_pred HHHHHHHHHHHHHcCCchhh--hHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhh
Q psy14676 262 RAAAKCLEAIIATRRDLIGD--MYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCL 339 (1827)
Q Consensus 262 raAak~L~~l~~~~~~~l~~--~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1827)
..|.+++..++...++.+.. ..+.+++.+...+.+.++++|..++.+++.+++... ..
T Consensus 192 ~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~--------------------~~ 251 (876)
T 1qgr_A 192 LAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY--------------------QY 251 (876)
T ss_dssp HHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSG--------------------GG
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhH--------------------HH
Confidence 99999999988653322211 112467778888888899999999999999986432 23
Q ss_pred HHhhhH-HHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCc---------------------ccccCchhhHHHHHHHHhh
Q psy14676 340 LSTQVP-SLVKALQCQLREKSIRTRQDCLALLRELVQTLP---------------------GCLAPSLPALIPDVTSVAE 397 (1827)
Q Consensus 340 l~~~lp-~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~---------------------~~l~~~l~~Llp~i~~~L~ 397 (1827)
+.++++ .+++.+.+.+++.++.||..++.++..++...+ ....++++.++|.+.+.+.
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~ 331 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT 331 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhh
Confidence 566777 889999999999999999999999988876531 0112356788888888873
Q ss_pred hhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcch
Q psy14676 398 WDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKER 477 (1827)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~ 477 (1827)
+. ++| +++..|++|.+|..++..++...|+ ..++.+++.+...+.+.
T Consensus 332 ~~-----------------~~d-------------~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~ 378 (876)
T 1qgr_A 332 KQ-----------------DEN-------------DDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNP 378 (876)
T ss_dssp CC-----------------CSS-------------CCTTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCS
T ss_pred cc-----------------ccc-------------ccccccHHHHHHHHHHHHHHHHCcH---hhHHHHHHHHHHHccCC
Confidence 10 000 0123589999999999999998884 34567788888889999
Q ss_pred hhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCC
Q psy14676 478 EENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSS 557 (1827)
Q Consensus 478 ~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~ 557 (1827)
++++|.+|+..++.+.+..+. +
T Consensus 379 ~~~~r~~a~~~l~~i~~~~~~---------------------------------------~------------------- 400 (876)
T 1qgr_A 379 DWRYRDAAVMAFGCILEGPEP---------------------------------------S------------------- 400 (876)
T ss_dssp SHHHHHHHHHHHHHTSSSSCH---------------------------------------H-------------------
T ss_pred ChHHHHHHHHHHHHHHcCCCH---------------------------------------H-------------------
Confidence 999999999988877643220 0
Q ss_pred CccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccch
Q psy14676 558 DKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDG 637 (1827)
Q Consensus 558 dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~ 637 (1827)
.+ ..+..++++.++.+++|++..||..|..++|++++.++.. .+..++++.+
T Consensus 401 ----------~~------------~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~------~~~~~~l~~~ 452 (876)
T 1qgr_A 401 ----------QL------------KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA------AINDVYLAPL 452 (876)
T ss_dssp ----------HH------------HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGG------TSSTTTHHHH
T ss_pred ----------HH------------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchh------cccHHHHHHH
Confidence 00 0123467888888999999999999999999998776541 1223455555
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhh
Q psy14676 638 IPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPA 717 (1827)
Q Consensus 638 i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~ 717 (1827)
++.|...++++ ...|..++.++..+...++.. ..
T Consensus 453 l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~--------------------------------------~~------- 486 (876)
T 1qgr_A 453 LQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEA--------------------------------------AD------- 486 (876)
T ss_dssp HHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHT--------------------------------------TS-------
T ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhc--------------------------------------cc-------
Confidence 55555555443 223333333333221000000 00
Q ss_pred hhhhhHHHhhhhcccccchhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhh
Q psy14676 718 AASILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQR 797 (1827)
Q Consensus 718 ~~~llp~ll~l~~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~ 797 (1827)
. + ++
T Consensus 487 -------------------------------------------------~-----~----------------------~~ 490 (876)
T 1qgr_A 487 -------------------------------------------------V-----A----------------------DD 490 (876)
T ss_dssp -------------------------------------------------C-----T----------------------TS
T ss_pred -------------------------------------------------c-----c----------------------cc
Confidence 0 0 00
Q ss_pred hhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcCC--CChhhHHH
Q psy14676 798 EALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTN--KSTSTNRT 875 (1827)
Q Consensus 798 ~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~~--~~~~vr~~ 875 (1827)
+ +.. .+ ..-..++..+++.+...+... ....+|..
T Consensus 491 ~-----------~~~---~~-----------------------------~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~ 527 (876)
T 1qgr_A 491 Q-----------EEP---AT-----------------------------YCLSSSFELIVQKLLETTDRPDGHQNNLRSS 527 (876)
T ss_dssp C-----------CCC---CC-----------------------------CSSTTTHHHHHHHHHHHTTSCSSCSTTHHHH
T ss_pred c-----------ccc---cc-----------------------------hhhhHhHHHHHHHHHHHHhCcCcchhhHHHH
Confidence 0 000 00 000123445666666655442 24578999
Q ss_pred HHHHHHHHHHhccccchhhhhhhHHHHHHhhcc-----------cc----hHHHHHHHHHHHHHHhhCC-Cccccccccc
Q psy14676 876 YIQCFAAICRQAGHRFAEHIERVMPLILKYSRE-----------ED----DELREFCLQACEAFVQRCP-KEITPHIQSI 939 (1827)
Q Consensus 876 ~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d-----------~~----~~vre~al~Ale~~v~~~~-~~i~p~l~~i 939 (1827)
++.+++.+++..|..+.+|+..++|.+++.+.+ ++ +++|..++.+++.++...+ ..+.||++
T Consensus 528 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-- 605 (876)
T 1qgr_A 528 AYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISD-- 605 (876)
T ss_dssp HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHH--
T ss_pred HHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHH--
Confidence 999999999999999999999999999988763 12 3456666677666655554 44444433
Q ss_pred cccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhH
Q psy14676 940 GRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNV 1019 (1827)
Q Consensus 940 ~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~ 1019 (1827)
.+
T Consensus 606 ------------------------------------------------------------~l------------------ 607 (876)
T 1qgr_A 606 ------------------------------------------------------------VV------------------ 607 (876)
T ss_dssp ------------------------------------------------------------HH------------------
T ss_pred ------------------------------------------------------------HH------------------
Confidence 23
Q ss_pred HHHHHhhhcccCCCCchHHHHHHhccCC--hhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCC
Q psy14676 1020 VAECLGKLTLIDPSNLLPRLQESLKSNS--ALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDN 1097 (1827)
Q Consensus 1020 a~e~Lg~L~~~~~~~llP~L~~~L~s~~--~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~ 1097 (1827)
+|.+.+.+++.. +..|..++.+++.++...+..+.|| ++.++|.+...+.+.
T Consensus 608 ----------------~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~----------~~~~~~~l~~~l~~~ 661 (876)
T 1qgr_A 608 ----------------MASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKY----------MEAFKPFLGIGLKNY 661 (876)
T ss_dssp ----------------HHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGG----------HHHHHHHHHHHHHHC
T ss_pred ----------------HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHH----------HHHHHHHHHHHHcCc
Confidence 233333333322 3578889999998888888888888 999999999999987
Q ss_pred -chhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q psy14676 1098 -FYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPV 1176 (1827)
Q Consensus 1098 -~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~ 1176 (1827)
.+.||..|+.+++.+++.+. ..+.||+..+++.++..+...+.+.++|..++.++|.++...|..+.++++.
T Consensus 662 ~~~~vr~~a~~~l~~l~~~~~-------~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~ 734 (876)
T 1qgr_A 662 AEYQVCLAAVGLVGDLCRALQ-------SNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEV 734 (876)
T ss_dssp TTHHHHHHHHHHHHHHHHHHG-------GGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHH
T ss_pred chHHHHHHHHHHHHHHHHHHH-------HhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHH
Confidence 89999999999999998874 4678999999999999998544567899999999999999999999999999
Q ss_pred hHHHHHHhhhhh-------------hhHHHHHHHHHHHhcCCCc---------cccchhhhhhHhhhhhhhcch--hHHH
Q psy14676 1177 CLPILLDRLRNE-------------ITRLTTVKALTKIAASPLR---------IDLRPILTDGIPILGSFLRKN--QRAL 1232 (1827)
Q Consensus 1177 lL~~Ll~~L~~e-------------~tR~~av~al~~ia~~~~~---------~dl~p~~~~~l~~L~~~Lrk~--~r~l 1232 (1827)
++|.+.+.++.. ..|..+.++++.++..... ..+.||++.+++.+.....+. +..+
T Consensus 735 ~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~v 814 (876)
T 1qgr_A 735 VLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGV 814 (876)
T ss_dssp HHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHH
T ss_pred HHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 999999887522 4588888888877653211 356788888887666655655 6789
Q ss_pred HHHHHHHHHHHHHhCCC-CcChHhHHHHHHHhhh-hcCCCChhHHHHHHHHHHHHHHhC
Q psy14676 1233 KLSTLLLLDTLLVNYPS-AISTEMLNKVTVELAP-LVSESDLHIAQLTLTLLTSIAKIQ 1289 (1827)
Q Consensus 1233 R~~al~aL~~L~~~~~~-~l~~~~~~~ll~~L~~-ll~d~D~~l~~~al~~L~~l~~~~ 1289 (1827)
|.+++.+|+.++...+. .+.+-..+.+++.+.. .+.+.|..+|+.+..+++.+.+..
T Consensus 815 r~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~ 873 (876)
T 1qgr_A 815 VACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLK 873 (876)
T ss_dssp HHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHHhh
Confidence 99999999999998776 4433223456666666 778999999999999999888743
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=384.02 Aligned_cols=703 Identities=16% Similarity=0.184 Sum_probs=533.9
Q ss_pred HHHHHHHh--cCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHH
Q psy14676 40 GKLSTAIE--KQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYT 116 (1827)
Q Consensus 40 P~Ll~~l~--~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~ 116 (1827)
+.|...+. .+.++.+|..|.-.|-..+.+.-..+.+ ....+.+.+++.|.++++.||..+..+++.++..-....+.
T Consensus 48 ~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp 127 (852)
T 4fdd_A 48 NYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWP 127 (852)
T ss_dssp HHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCT
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccH
Confidence 44444443 3458899999999888777654444544 45688999999999999999999999999999987667788
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHH-----hHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCC
Q psy14676 117 KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAE-----HIERVMPLILKYSREEDDELREFCLQACEAFVQRCP 191 (1827)
Q Consensus 117 ~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p-----~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p 191 (1827)
.+++.+++.+.+ ++..+|..++.+++.+++..+..+.+ ++..++|.+++.+++++.++|..|+.++..++...+
T Consensus 128 ~ll~~L~~~l~~-~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 128 DLLPKLCSLLDS-EDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp THHHHHHHHHSC-SSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Confidence 888889888865 45789999999999999998877654 378899999999999999999999998887776666
Q ss_pred CccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHH
Q psy14676 192 KEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAI 271 (1827)
Q Consensus 192 ~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l 271 (1827)
+.+.++++.+++.+++.+.. .++.||+.|+++|..+
T Consensus 207 ~~~~~~~~~~l~~l~~~~~d--------------------------------------------~~~~vr~~a~~~L~~l 242 (852)
T 4fdd_A 207 QALMLHIDSFIENLFALAGD--------------------------------------------EEPEVRKNVCRALVML 242 (852)
T ss_dssp HHHHTSHHHHHHHHHHHHTC--------------------------------------------CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC--------------------------------------------CCHHHHHHHHHHHHHH
Confidence 66777888899988876521 1247999999999999
Q ss_pred HHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHH
Q psy14676 272 IATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKAL 351 (1827)
Q Consensus 272 ~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l 351 (1827)
+..+++.+.++++.+++.+...+++.+++||..|+.++..+++. ..+...+.+.++.++|.+
T Consensus 243 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~------------------~~~~~~~~~~~~~l~p~l 304 (852)
T 4fdd_A 243 LEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQ------------------PICKDVLVRHLPKLIPVL 304 (852)
T ss_dssp HHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS------------------TTHHHHHTTTHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc------------------hhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887742 124456778889999999
Q ss_pred HHHh-----------cc-----------CCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCC
Q psy14676 352 QCQL-----------RE-----------KSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGG 409 (1827)
Q Consensus 352 ~~~L-----------~d-----------~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~ 409 (1827)
++.| .| .+..+|.++...++.++...|. ..++.++|.+...+.
T Consensus 305 l~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~~l~~~l~~~l~------------ 369 (852)
T 4fdd_A 305 VNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLKELLF------------ 369 (852)
T ss_dssp HHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHHT------------
T ss_pred HHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhc------------
Confidence 8887 34 3457899999999999998874 456788888888873
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHH
Q psy14676 410 GEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAY 489 (1827)
Q Consensus 410 ~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l 489 (1827)
+.+|++|.+|+.+++.+++..++.+.++++.++|.++..+.|.++.||..+..++
T Consensus 370 -------------------------~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l 424 (852)
T 4fdd_A 370 -------------------------HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTL 424 (852)
T ss_dssp -------------------------CSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred -------------------------CCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 2469999999999999999888888899999999999999999999999999988
Q ss_pred HHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHH
Q psy14676 490 MALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDL 569 (1827)
Q Consensus 490 ~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl 569 (1827)
+.+.+..+-. .
T Consensus 425 ~~l~~~~~~~-~-------------------------------------------------------------------- 435 (852)
T 4fdd_A 425 SRYAHWVVSQ-P-------------------------------------------------------------------- 435 (852)
T ss_dssp HHTHHHHHHS-C--------------------------------------------------------------------
T ss_pred HHHHHHhccc-h--------------------------------------------------------------------
Confidence 8887644310 0
Q ss_pred HHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhh
Q psy14676 570 MSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQ 649 (1827)
Q Consensus 570 ~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~ 649 (1827)
...+...+++.++..+.|.+.+||..|..+++.+++..+. .+.+|++.+++.|...+++.+
T Consensus 436 -----------~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~--------~l~~~l~~ll~~L~~~l~~~~ 496 (852)
T 4fdd_A 436 -----------PDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT--------ELVPYLAYILDTLVFAFSKYQ 496 (852)
T ss_dssp -----------TTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG--------GGGGGHHHHHHHHHHHHHHCC
T ss_pred -----------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH--------hhHhHHHHHHHHHHHHHHHhC
Confidence 0012346777888888899999999999999999877663 234555555554443332211
Q ss_pred hhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhhhhHHHhhhh
Q psy14676 650 RALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIA 729 (1827)
Q Consensus 650 ~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~llp~ll~l~ 729 (1827)
..
T Consensus 497 ~~------------------------------------------------------------------------------ 498 (852)
T 4fdd_A 497 HK------------------------------------------------------------------------------ 498 (852)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred hH------------------------------------------------------------------------------
Confidence 00
Q ss_pred cccccchhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy14676 730 KSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKE 809 (1827)
Q Consensus 730 ~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~ 809 (1827)
T Consensus 499 -------------------------------------------------------------------------------- 498 (852)
T 4fdd_A 499 -------------------------------------------------------------------------------- 498 (852)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccc
Q psy14676 810 LKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGH 889 (1827)
Q Consensus 810 l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~ 889 (1827)
....++.+++.++.+.|+
T Consensus 499 --------------------------------------------------------------~~~~~~~ai~~l~~~~~~ 516 (852)
T 4fdd_A 499 --------------------------------------------------------------NLLILYDAIGTLADSVGH 516 (852)
T ss_dssp --------------------------------------------------------------HHHHHHHHHHHHHHHHGG
T ss_pred --------------------------------------------------------------HHHHHHHHHHHHHHHhhh
Confidence 001112222223333333
Q ss_pred cc--hhhhhhhHHHHHH---hhcccchHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChH
Q psy14676 890 RF--AEHIERVMPLILK---YSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSE 964 (1827)
Q Consensus 890 ~~--~~yl~~ilP~ll~---~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e 964 (1827)
.+ .+|++.++|.+++ .+.++++++| .++++++.++...+..+.||++.+.+
T Consensus 517 ~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~----------------------- 572 (852)
T 4fdd_A 517 HLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQ----------------------- 572 (852)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHH-----------------------
T ss_pred hhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHH-----------------------
Confidence 33 3588999999984 5566777776 67788777776666666666654322
Q ss_pred hHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHhc
Q psy14676 965 EVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLK 1044 (1827)
Q Consensus 965 ~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~ 1044 (1827)
.+++.+-..+... + .....++ ...
T Consensus 573 -----------------------------------~~~~~l~~~l~~~----------~---~~~~~~~--------~~~ 596 (852)
T 4fdd_A 573 -----------------------------------RCVNLVQKTLAQA----------M---LNNAQPD--------QYE 596 (852)
T ss_dssp -----------------------------------HHHHHHHHHHHHH----------H---HHHHCTT--------TSC
T ss_pred -----------------------------------HHHHHHHHHHHHH----------H---HhhcCCc--------ccC
Confidence 1111110000000 0 0000000 001
Q ss_pred cCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhh--hhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCC
Q psy14676 1045 SNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFY--YFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSP 1122 (1827)
Q Consensus 1045 s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l--~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~ 1122 (1827)
.++...+..++.+++.++...+..+.+| + +.+++.++.++.|+.+.||..++.+++.+++.+.
T Consensus 597 ~~d~~~~~~~l~~l~~l~~~l~~~~~~~----------~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~----- 661 (852)
T 4fdd_A 597 APDKDFMIVALDLLSGLAEGLGGNIEQL----------VARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACF----- 661 (852)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHGGGGHHH----------HHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG-----
T ss_pred CCcchHHHHHHHHHHHHHHHHhHhHHHH----------hcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhh-----
Confidence 2234578888899998888888888887 7 7899999999999999999999999999998753
Q ss_pred CCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhh----hhHHHHHHHH
Q psy14676 1123 SSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNE----ITRLTTVKAL 1198 (1827)
Q Consensus 1123 ~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e----~tR~~av~al 1198 (1827)
..+.+|+..+++.+...+. +.+.++|..|+.++|.++.++|..+.|+...+++.|+..+++. ..|..++.++
T Consensus 662 --~~~~~~l~~~lp~l~~~l~--~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~i 737 (852)
T 4fdd_A 662 --QHVKPCIADFMPILGTNLN--PEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITI 737 (852)
T ss_dssp --GGTGGGHHHHHHHHHHTCC--TTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHcC--ccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence 5788999999999999885 6688999999999999999999999999999999999999764 3488899999
Q ss_pred HHHhcCCCccccchhhhhhHhhhhhhhcc-hhHHHHHHHHHHHHHHHHhCCCCcCh
Q psy14676 1199 TKIAASPLRIDLRPILTDGIPILGSFLRK-NQRALKLSTLLLLDTLLVNYPSAIST 1253 (1827)
Q Consensus 1199 ~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk-~~r~lR~~al~aL~~L~~~~~~~l~~ 1253 (1827)
|.++... ...+.|+++++++.+...|++ .+...|..++.+|..++...+..+.+
T Consensus 738 grl~~~~-~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~ 792 (852)
T 4fdd_A 738 GRLGYVC-PQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQ 792 (852)
T ss_dssp HHHHHHC-HHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGG
T ss_pred HHHHHhC-HHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHH
Confidence 9998752 234568899999998888874 55667999999999999987765443
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-30 Score=338.84 Aligned_cols=562 Identities=14% Similarity=0.149 Sum_probs=425.0
Q ss_pred CCchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHH
Q psy14676 2 VSDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVIL 81 (1827)
Q Consensus 2 ~~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il 81 (1827)
-+++.++|..+..+|+++...+++. ...++++|.|.+.+ ++++.+|..+..+|+.+...+++. .+...++
T Consensus 20 ~s~~~~~R~~A~~~l~~i~~~~~~~------~~~~~l~~~L~~~~--d~~~~vr~~~~~~L~~~~~~~~~~--~~~~~ll 89 (588)
T 1b3u_A 20 RNEDVQLRLNSIKKLSTIALALGVE------RTRSELLPFLTDTI--YDEDEVLLALAEQLGTFTTLVGGP--EYVHCLL 89 (588)
T ss_dssp TCSCHHHHHHHHHTHHHHHHHSCHH------HHHHTHHHHHHHTC--CCCHHHHHHHHHHHTTCSGGGTSG--GGGGGGH
T ss_pred hcccHHHHHHHHHhHHHHHHHhCHH------HHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHhccCcH--HHHHHHH
Confidence 4677899999999999998877553 34788999998776 347899999999988776665442 2445677
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHH
Q psy14676 82 TALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVM 161 (1827)
Q Consensus 82 ~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~ 161 (1827)
+.+...+.++++.||+.|+.+++.++..+++..+.+.+.+++..+.++++..+|..++.+++.++...+.. +.+.++
T Consensus 90 ~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~---~~~~l~ 166 (588)
T 1b3u_A 90 PPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA---VKAELR 166 (588)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---HHHHHH
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---HHHHHH
Confidence 87777778899999999999999999999887666666666666666667889999999999998877643 467889
Q ss_pred HHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCC
Q psy14676 162 PLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGE 241 (1827)
Q Consensus 162 p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~d 241 (1827)
|.+.+.++++++++|..|.+++..++..++.+ .+.+.++|.+.+.+..
T Consensus 167 ~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d------------------------------ 214 (588)
T 1b3u_A 167 QYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASD------------------------------ 214 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTC------------------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcC------------------------------
Confidence 99999999999999999999999999988764 3567788888766521
Q ss_pred CCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCC
Q psy14676 242 DEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSP 321 (1827)
Q Consensus 242 de~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~ 321 (1827)
.+|.||.+|+++|+.++...++ ..+.+.++|.+...+++.+|.||..++.+++.+....+.
T Consensus 215 --------------~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--- 275 (588)
T 1b3u_A 215 --------------EQDSVRLLAVEACVNIAQLLPQ--EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--- 275 (588)
T ss_dssp --------------SCHHHHTTHHHHHHHHHHHSCH--HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---
T ss_pred --------------CcHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---
Confidence 1368999999999999988764 245678899999999999999999999999999864321
Q ss_pred CCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCccccc--CchhhHHHHHHHHhhhh
Q psy14676 322 LTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLA--PSLPALIPDVTSVAEWD 399 (1827)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~--~~l~~Llp~i~~~L~~~ 399 (1827)
....+.+++.+.+.++|+++.||.++...++.+...++.... .+.+.++|.+...++
T Consensus 276 -------------------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~-- 334 (588)
T 1b3u_A 276 -------------------EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVS-- 334 (588)
T ss_dssp -------------------HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHT--
T ss_pred -------------------ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhc--
Confidence 123566788899999999999999999999999998876432 578889999988872
Q ss_pred hcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhh
Q psy14676 400 EEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREE 479 (1827)
Q Consensus 400 ~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~ 479 (1827)
|.+|++|.+++.+++.++...|... +.+.+.|.+...++|.++
T Consensus 335 -----------------------------------d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~ 377 (588)
T 1b3u_A 335 -----------------------------------DANQHVKSALASVIMGLSPILGKDN--TIEHLLPLFLAQLKDECP 377 (588)
T ss_dssp -----------------------------------CSCHHHHHHHHTTGGGGHHHHCHHH--HHHHTHHHHHHHHTCSCH
T ss_pred -----------------------------------CCCHHHHHHHHHHHHHHHHHhhHhH--HHHHHHHHHHHHhCCCch
Confidence 3579999999999999999888422 245688889999999999
Q ss_pred hhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCc
Q psy14676 480 NVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDK 559 (1827)
Q Consensus 480 ~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dp 559 (1827)
+||..++..+..+.+.+|..
T Consensus 378 ~Vr~~a~~~l~~l~~~~~~~------------------------------------------------------------ 397 (588)
T 1b3u_A 378 EVRLNIISNLDCVNEVIGIR------------------------------------------------------------ 397 (588)
T ss_dssp HHHHHHHTTCHHHHHHSCHH------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhcCHH------------------------------------------------------------
Confidence 99999998877777654410
Q ss_pred cccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhh
Q psy14676 560 DFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIP 639 (1827)
Q Consensus 560 d~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~ 639 (1827)
.....+++.+..++.|.+.+||..+..+++.+++.++.. .+.+.++|
T Consensus 398 -----------------------~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~----------~~~~~l~~ 444 (588)
T 1b3u_A 398 -----------------------QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE----------FFDEKLNS 444 (588)
T ss_dssp -----------------------HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG----------GCCHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH----------HHHHHHHH
Confidence 011234555566677888888888888888888777641 13355678
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhh
Q psy14676 640 ILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAA 719 (1827)
Q Consensus 640 ~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~ 719 (1827)
.+..++++++..+|.+++.++..+...++.. ...+
T Consensus 445 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---------------------------------------------~~~~ 479 (588)
T 1b3u_A 445 LCMAWLVDHVYAIREAATSNLKKLVEKFGKE---------------------------------------------WAHA 479 (588)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---------------------------------------------HHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHhCch---------------------------------------------hHHH
Confidence 8888888887788888777777764333210 0123
Q ss_pred hhhHHHhhhhcccccchhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhh
Q psy14676 720 SILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREA 799 (1827)
Q Consensus 720 ~llp~ll~l~~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~ 799 (1827)
.++|.+..+.++
T Consensus 480 ~llp~l~~~~~~-------------------------------------------------------------------- 491 (588)
T 1b3u_A 480 TIIPKVLAMSGD-------------------------------------------------------------------- 491 (588)
T ss_dssp HTHHHHHHTTTC--------------------------------------------------------------------
T ss_pred HHHHHHHHHhhC--------------------------------------------------------------------
Confidence 344444321100
Q ss_pred hhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHH-HHHHHHHHhhhcCCCChhhHHHHHH
Q psy14676 800 LPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLY-TKLIDFLLEGLTTNKSTSTNRTYIQ 878 (1827)
Q Consensus 800 ~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~-~~l~~~l~~~l~~~~~~~vr~~~l~ 878 (1827)
... .+|..++.+++.+...++.+.| ..+++.++.. .+++++.||..++.
T Consensus 492 ----------------~~~-------------~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~-l~d~~~~Vr~~a~~ 541 (588)
T 1b3u_A 492 ----------------PNY-------------LHRMTTLFCINVLSEVCGQDITTKHMLPTVLRM-AGDPVANVRFNVAK 541 (588)
T ss_dssp ----------------SCH-------------HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHG-GGCSCHHHHHHHHH
T ss_pred ----------------CCH-------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhh-CCCCCchHHHHHHH
Confidence 000 1566667777777666665543 3444444443 44778899999999
Q ss_pred HHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHH
Q psy14676 879 CFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEA 923 (1827)
Q Consensus 879 ~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~ 923 (1827)
+++.+++..|..+.. +.++|.+.+.+.|.+.+||..|..|++.
T Consensus 542 ~l~~l~~~~~~~~~~--~~~~p~l~~l~~d~d~~vr~~a~~al~~ 584 (588)
T 1b3u_A 542 SLQKIGPILDNSTLQ--SEVKPILEKLTQDQDVDVKYFAQEALTV 584 (588)
T ss_dssp HHHHHGGGSCHHHHH--HHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhH--HHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence 999999988875432 6788888887888999999999999876
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=314.78 Aligned_cols=545 Identities=14% Similarity=0.149 Sum_probs=406.5
Q ss_pred hhHHHHHHHHHHHhhhcH-HHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccch
Q psy14676 833 NLQLTIVALSHLVMSCNL-QLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDD 911 (1827)
Q Consensus 833 ~r~~Ai~aL~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~ 911 (1827)
+|..|+.+|+.++...++ .....+++.+.... ++++.+|..+...++.+....+. ..|...++|.+...+.++++
T Consensus 26 ~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~--d~~~~vr~~~~~~L~~~~~~~~~--~~~~~~ll~~L~~l~~~~~~ 101 (588)
T 1b3u_A 26 LRLNSIKKLSTIALALGVERTRSELLPFLTDTI--YDEDEVLLALAEQLGTFTTLVGG--PEYVHCLLPPLESLATVEET 101 (588)
T ss_dssp HHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC--CCCHHHHHHHHHHHTTCSGGGTS--GGGGGGGHHHHHHHTTSSCH
T ss_pred HHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHHhCchH
Confidence 788899999888776553 44556666665544 56778898888888877765544 25778888888887778888
Q ss_pred HHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchh
Q psy14676 912 ELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGV 991 (1827)
Q Consensus 912 ~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~ 991 (1827)
.+|+.|.+++..+...++.+
T Consensus 102 ~vR~~a~~~L~~l~~~~~~~------------------------------------------------------------ 121 (588)
T 1b3u_A 102 VVRDKAVESLRAISHEHSPS------------------------------------------------------------ 121 (588)
T ss_dssp HHHHHHHHHHHHHHTTSCHH------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHCCHH------------------------------------------------------------
Confidence 89988888876644322110
Q ss_pred hhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccc
Q psy14676 992 AQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHN 1071 (1827)
Q Consensus 992 ~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~ 1071 (1827)
.+. ..++|.+.+..+++++..|..++.+++.++.+.+..
T Consensus 122 -~~~-------------------------------------~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~--- 160 (588)
T 1b3u_A 122 -DLE-------------------------------------AHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA--- 160 (588)
T ss_dssp -HHH-------------------------------------HTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---
T ss_pred -HHH-------------------------------------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---
Confidence 000 123555555566777888999999888776655432
Q ss_pred cccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHH
Q psy14676 1072 HNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEV 1151 (1827)
Q Consensus 1072 ~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eV 1151 (1827)
+ .+.++|.+...+.|+++.||..|+.+++.+++.+.+ ..+...+++.+...+. |.+..|
T Consensus 161 ~----------~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---------~~~~~~l~~~l~~~~~--d~~~~v 219 (588)
T 1b3u_A 161 V----------KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---------DNVKSEIIPMFSNLAS--DEQDSV 219 (588)
T ss_dssp H----------HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---------HHHHHTHHHHHHHHHT--CSCHHH
T ss_pred H----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH---------HhHHHHHHHHHHHHhc--CCcHHH
Confidence 2 567889999999999999999999999999976431 1345667777776665 788999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh--HHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchh
Q psy14676 1152 KERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT--RLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQ 1229 (1827)
Q Consensus 1152 re~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t--R~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~ 1229 (1827)
|..|+.+++.+....++. ...+.++|.+.+.+++++| |..+++++|.++..... +.+...+++.+..++++++
T Consensus 220 r~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~ 294 (588)
T 1b3u_A 220 RLLAVEACVNIAQLLPQE--DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCE 294 (588)
T ss_dssp HTTHHHHHHHHHHHSCHH--HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCc
Confidence 999999999999877652 3456688888888877766 99999999999864221 2245677888999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcCh-HhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccc
Q psy14676 1230 RALKLSTLLLLDTLLVNYPSAIST-EMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRH 1308 (1827)
Q Consensus 1230 r~lR~~al~aL~~L~~~~~~~l~~-~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~ 1308 (1827)
+.+|.+++.+|+.++...+..... ...+.++|.+..+++|.++.+|..++.+|+.++... |..
T Consensus 295 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~----------------~~~ 358 (588)
T 1b3u_A 295 AEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL----------------GKD 358 (588)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHH----------------CHH
T ss_pred HHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh----------------hHh
Confidence 999999999999999977654221 356678888889999999999998887776665422 211
Q ss_pred cCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhh-----hhhhhHHHHHHhhhc-CchhhHHHHHHHHHHHhhccc
Q psy14676 1309 TDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVG-----NLQQYVPFVLKEIEN-QPKRQYLLLHSLKEIISWQST 1382 (1827)
Q Consensus 1309 ~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~-----~l~~~LP~Il~~i~~-~~~~q~~~l~aL~Eii~~~~~ 1382 (1827)
. ..+.+.|.+...++|++++||.+|..+||.++.. ..+.++|.+.+.+++ ++..|..++.+|+.+....
T Consensus 359 ~---~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~-- 433 (588)
T 1b3u_A 359 N---TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQL-- 433 (588)
T ss_dssp H---HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH--
T ss_pred H---HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHc--
Confidence 1 1356889999999999999999999999986532 235688999888766 3344555566666665422
Q ss_pred cccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCC-----CcchHHHHHhhhcCCHHHHHHHHHHHHHH
Q psy14676 1383 STSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDP-----SNLLPRLQESLKSNSALMRTTVLTAVKFT 1457 (1827)
Q Consensus 1383 s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p-----~~~lP~L~~~l~~~~~~~R~t~l~Alk~~ 1457 (1827)
|.. .+.+.+++.++..+.+.+..+|..++.++|.++...+ ..++|.|.+..+++++.+|.+++.++..+
T Consensus 434 ---~~~---~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l 507 (588)
T 1b3u_A 434 ---GVE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVL 507 (588)
T ss_dssp ---CGG---GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHH
T ss_pred ---CHH---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 222 2446778888888878888899999999999987543 36789999888899999999999999888
Q ss_pred hhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Q psy14676 1458 ISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDA 1537 (1827)
Q Consensus 1458 ~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~ 1537 (1827)
....+. . .+...++|.++.+++|++++||.++++++|.+.+.+..+.....+.+
T Consensus 508 ~~~~~~----~----------------------~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p 561 (588)
T 1b3u_A 508 SEVCGQ----D----------------------ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKP 561 (588)
T ss_dssp HHHHHH----H----------------------HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHH
T ss_pred HHhcCH----H----------------------HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 643210 0 12356789999999999999999999999999988876665566667
Q ss_pred HHhhhcccccccccCCccchhHHHHHHHhhh
Q psy14676 1538 LCSNMVSDKEQLRDISSIGLKTVISVVYCLG 1568 (1827)
Q Consensus 1538 l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~ 1568 (1827)
++..+..|.+ ++||+.|..++.+.
T Consensus 562 ~l~~l~~d~d-------~~vr~~a~~al~~l 585 (588)
T 1b3u_A 562 ILEKLTQDQD-------VDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHTTCSS-------HHHHHHHHHHHHHT
T ss_pred HHHHHcCCCc-------hhHHHHHHHHHHHh
Confidence 6666666544 49999999999765
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-20 Score=239.92 Aligned_cols=303 Identities=15% Similarity=0.161 Sum_probs=244.1
Q ss_pred HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhc-cCCCCchhHHHHHHHhhhcCCC--CHHHHHHHHHHHHHHHHhh
Q psy14676 35 CRRITGKLSTAIEKQE-DVSVQLEALDILSDLLSRF-GALLPSFHFVILTALLPQLSSP--RQAVRKRTIVALSHLVMSC 110 (1827)
Q Consensus 35 ~~~L~P~Ll~~l~~~~-~~~v~~~al~iL~~l~~~~-~~~l~~~~~~il~~ll~~L~~~--~~~VRk~Ai~aL~~l~~~~ 110 (1827)
...++|.|++.+.++. ++.+|+.++.+|+.+++++ +..+.++.+.+++.++..|+++ ++.||+.|+.|++.+++.+
T Consensus 126 w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (462)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5679999999997643 7899999999999999988 5666678889999999999987 7999999999999987765
Q ss_pred chh----HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHH-HHHHHHHhhcccCchHHHHHHHHHHHH
Q psy14676 111 NLQ----LYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIE-RVMPLILKYSREEDDELREFCLQACEA 185 (1827)
Q Consensus 111 ~~~----~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~-~i~p~l~~~~~~~~delRe~al~ale~ 185 (1827)
.+. .+..++-..+..+..+.+..+|+.++++++.+++..++.|.+|+. .++++++..+++.++++|..|+.++..
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~ 285 (462)
T 1ibr_B 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN 285 (462)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 432 122332223333345567899999999999999999999999999 999999998888899999888777766
Q ss_pred HHHhC---------------------CCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCC
Q psy14676 186 FVQRC---------------------PKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEG 244 (1827)
Q Consensus 186 ~~~~~---------------------p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~ 244 (1827)
++..- ...+.+|++.++|.+++.+... |+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~-----------------------------d~- 335 (462)
T 1ibr_B 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ-----------------------------DE- 335 (462)
T ss_dssp HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCC-----------------------------CS-
T ss_pred HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhc-----------------------------cc-
Confidence 65531 1234567899999998877421 00
Q ss_pred CCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCC
Q psy14676 245 EDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTP 324 (1827)
Q Consensus 245 e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~ 324 (1827)
|++|.+|++|++|+.+|+.++...++ .+++.++|.+...+++++|.+|.+++.+++.+++...
T Consensus 336 -------d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~------- 398 (462)
T 1ibr_B 336 -------NDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE------- 398 (462)
T ss_dssp -------SCCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-------
T ss_pred -------ccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc-------
Confidence 01234699999999999999999884 5678899999999999999999999999999884210
Q ss_pred CCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccc--cCchhhHHHHHHHHh
Q psy14676 325 SDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCL--APSLPALIPDVTSVA 396 (1827)
Q Consensus 325 ~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l--~~~l~~Llp~i~~~L 396 (1827)
...+.++++.++|.+.+.|+|++++||.+|+..++.++..++..+ .+|++.++|.+...|
T Consensus 399 ------------~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 399 ------------PSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp ------------TTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred ------------HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHh
Confidence 023456788999999999999999999999999999999998765 589999999988766
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-17 Score=231.85 Aligned_cols=587 Identities=13% Similarity=0.115 Sum_probs=338.5
Q ss_pred HHHHHHHHHHHHHHHhh-CCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc---------
Q psy14676 6 EQLRDISSIGLKTVISE-LPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS--------- 75 (1827)
Q Consensus 6 ~~~Rdi~~~~Lktvi~~-lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~--------- 75 (1827)
..+|...+.++..|... .|. . .+.++|.|++.++++ ++..+.+++.+|..+++++...+..
T Consensus 99 ~~ir~~l~~~ia~ia~~d~p~-~-------Wp~ll~~L~~~l~s~-~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~ 169 (960)
T 1wa5_C 99 NNLQVQIGEAISSIADSDFPD-R-------WPTLLSDLASRLSND-DMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKL 169 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHSTT-T-------CTTHHHHHHTTCCSS-CTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCcc-c-------hhHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHH
Confidence 34555556566555543 442 1 578999999988654 6778899999999999988653322
Q ss_pred ----hhHHHHH---HHhhhcCCCCH---HHH------HHHHHHHHHHHH-hhch---hHHHHHHHHHHHhccC-------
Q psy14676 76 ----FHFVILT---ALLPQLSSPRQ---AVR------KRTIVALSHLVM-SCNL---QLYTKLIDFLLEGLTT------- 128 (1827)
Q Consensus 76 ----~~~~il~---~ll~~L~~~~~---~VR------k~Ai~aL~~l~~-~~~~---~~~~~l~~~ll~~L~~------- 128 (1827)
+.+.+++ .+.+.++++.. .+| ..++.++..+.. ..++ +.+...++.+.+.|..
T Consensus 170 ~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~ 249 (960)
T 1wa5_C 170 VLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLED 249 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccC
Confidence 1111222 22333554322 233 334445544331 1122 2234444444444422
Q ss_pred C---CC----HHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcc-----cCchHHHHHHHHHHHHHHHhCC-----
Q psy14676 129 N---KS----TSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSR-----EEDDELREFCLQACEAFVQRCP----- 191 (1827)
Q Consensus 129 ~---~~----~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~-----~~~delRe~al~ale~~~~~~p----- 191 (1827)
+ .. ..+|+.++.++..+++..++.|.||++.+++++++.+. ..+++++ .+++++|...+.
T Consensus 250 d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~al~fl~~~~~~~~~~ 326 (960)
T 1wa5_C 250 PDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILV---SKSLSFLTAVTRIPKYF 326 (960)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHH---HHHHHHHHHHHTSHHHH
T ss_pred CcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHH---HHHHHHHHHHhCcHhHH
Confidence 1 00 24688999999999999999999999999999998774 2355555 556666655442
Q ss_pred Cccc--cchHHHH-HHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHH
Q psy14676 192 KEIT--PHIQSIT-ELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCL 268 (1827)
Q Consensus 192 ~e~~--p~l~~ii-~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L 268 (1827)
+.+. +|++.++ +.++.+|.+.+ +|++.| +++ .+|+-. + +.+++..|.+|+||..+|
T Consensus 327 ~~~~~~~~l~~li~~~i~~~m~~~~----~d~e~w------------~~d--p~e~i~-~--d~e~~d~~s~R~aa~~~L 385 (960)
T 1wa5_C 327 EIFNNESAMNNITEQIILPNVTLRE----EDVELF------------EDD--PIEYIR-R--DLEGSDTDTRRRACTDFL 385 (960)
T ss_dssp GGGCSHHHHHHHHHHTHHHHHSCCG----GGTTTT------------TTC--HHHHHH-H--HHHC----CHHHHHHHHH
T ss_pred HHHcCchHHHHHHHHHhHHhcCCCH----HHHHHH------------hcC--HHHHHH-h--ccCcccccCcHHHHHHHH
Confidence 2354 8999999 79999997742 111112 000 000000 0 001233579999999999
Q ss_pred HHHHHHcCCchhhhHHhhhHHHHhhcC------CCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHh
Q psy14676 269 EAIIATRRDLIGDMYRLVSPPLIARFK------EREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLST 342 (1827)
Q Consensus 269 ~~l~~~~~~~l~~~~~~v~p~L~~~l~------e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 342 (1827)
..++..+++ .+++.+++.+.+.+. ..+|..|.+|+.+++++...... ... ... . . .....
T Consensus 386 ~~l~~~~~~---~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~-~~~------~~~--~-~-~~~~~ 451 (960)
T 1wa5_C 386 KELKEKNEV---LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNI-TNA------GVS--S-T-NNLLN 451 (960)
T ss_dssp HHHHHHCHH---HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCC-BTT------BCC--C-B-CTTCC
T ss_pred HHHHHHcch---hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhcc-ccC------Ccc--c-c-ccccc
Confidence 999998874 345556666666554 67899999999999999743110 000 000 0 0 00011
Q ss_pred hhHHHHHHHHHHhccC---CHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccC
Q psy14676 343 QVPSLVKALQCQLREK---SIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEED 419 (1827)
Q Consensus 343 ~lp~Iv~~l~~~L~d~---~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed 419 (1827)
..+-++..+...|.|+ ++.||..++-.++.++..++ .++++.++|.+.+.+.+
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~---~~~l~~~l~~l~~~L~d--------------------- 507 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQT--------------------- 507 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTC---------------------
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCC---------------------
Confidence 2222344555666777 99999988889999988774 35789999999988731
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHh-----------hhhhhhhHHhhhhhHHHhhcch-----hhhhHH
Q psy14676 420 GEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATR-----------RDLIGDMYRLVSPPLIARFKER-----EENVKS 483 (1827)
Q Consensus 420 ~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~-----------~~~f~~~~~~l~~~L~~~~~d~-----~~~Vr~ 483 (1827)
.+-+||.+|+.++..|+... +..+.||++.+++.|+..++.. ......
T Consensus 508 ----------------~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 508 ----------------DEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp ----------------SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred ----------------CChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 25789999999999999742 3568899999999999988764 122446
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcC-CCcccc
Q psy14676 484 DIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTS-SDKDFR 562 (1827)
Q Consensus 484 ~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d-~dpd~R 562 (1827)
.++.++..++..++- . +.+.+..++..+...+. ...++ .++.++
T Consensus 572 ~l~~al~~vv~~~~~-----~---------------~~p~~~~l~~~L~~~l~---------------~~~~~~~~~~~~ 616 (960)
T 1wa5_C 572 FLMRSIFRVLQTSED-----S---------------IQPLFPQLLAQFIEIVT---------------IMAKNPSNPRFT 616 (960)
T ss_dssp HHHHHHHHHHHHHTT-----T---------------TGGGHHHHHHHHHHHHH---------------HHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHHH-----h---------------hhhHHHHHHHHHHHHHH---------------HHHhCCCCcHHH
Confidence 777788887776651 0 11222333333333221 11122 244455
Q ss_pred ccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhh
Q psy14676 563 FMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILG 642 (1827)
Q Consensus 563 f~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~ 642 (1827)
...++.+...++...-..-......+++.+...+.....+...++...++.+++.. .++.+++..+.|.+.
T Consensus 617 ~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~---------~~~~~~~~~~~~~l~ 687 (960)
T 1wa5_C 617 HYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS---------ATIPESIKPLAQPLL 687 (960)
T ss_dssp HHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC---------SSCCTTTGGGHHHHT
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc---------cCCCHHHHHHHHHHc
Confidence 33444444443320111122467788999999998777788889999999888665 134567777777776
Q ss_pred --hhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhh
Q psy14676 643 --SFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAAS 720 (1827)
Q Consensus 643 --~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~ 720 (1827)
..++... .=...+.++...+..++..+.+ ++.+...+-.++.+... ...++.+++.++..-+...+.+..+.
T Consensus 688 ~~~~~~~~~--~~~~~~~~L~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~~~~~~~yl~~ 761 (960)
T 1wa5_C 688 APNVWELKG--NIPAVTRLLKSFIKTDSSIFPD--LVPVLGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLRPYIKQ 761 (960)
T ss_dssp SGGGGCCTT--THHHHHHHHHHHHHHHGGGCSC--SHHHHHHHHHHHTCTTT--HHHHHHHHHHHHHHSCHHHHGGGHHH
T ss_pred CHHHhcCCC--CchhHHHHHHHHHHhChHHHHH--HHHHHHHHHHHhCCCcc--cchHHHHHHHHHHHCCHHHHHHHHHH
Confidence 5544331 1123334455544433322221 11122212122222211 15667777776654332213333444
Q ss_pred hhHHHhhhh
Q psy14676 721 ILPQVLQIA 729 (1827)
Q Consensus 721 llp~ll~l~ 729 (1827)
+++.++..+
T Consensus 762 i~~~l~~~l 770 (960)
T 1wa5_C 762 IAVLLLQRL 770 (960)
T ss_dssp HHHHHHHGG
T ss_pred HHHHHHHHH
Confidence 455444433
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.3e-18 Score=213.64 Aligned_cols=411 Identities=15% Similarity=0.164 Sum_probs=299.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCC--CCHHHHHHHHHHHHHHHH-----------
Q psy14676 42 LSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSS--PRQAVRKRTIVALSHLVM----------- 108 (1827)
Q Consensus 42 Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~--~~~~VRk~Ai~aL~~l~~----------- 108 (1827)
++.++.+ ++..+|..|-..|.++... ..+.+...+++.+.+ .++.||..|...|.+++.
T Consensus 6 ~L~~~~s-~d~~~r~~Ae~~L~~~~~~-------~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (462)
T 1ibr_B 6 ILEKTVS-PDRLELEAAQKFLERAAVE-------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (462)
T ss_dssp HHHHTTC-SCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHhcC-CCHHHHHHHHHHHHHHHhh-------ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHH
Confidence 4444443 4889999999999886542 123455555666654 368999999999999873
Q ss_pred ----hhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccC--chHHHHHHHHH
Q psy14676 109 ----SCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREE--DDELREFCLQA 182 (1827)
Q Consensus 109 ----~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~--~delRe~al~a 182 (1827)
.++++....+-..++..|.+. +..+ +.+.++++.+++..... .++++++|.+++.++++ ++.+|+.|+.+
T Consensus 78 ~~~~~l~~~~~~~ik~~ll~~l~~~-~~~v-~~~~~~i~~ia~~~~~~--~~w~~ll~~L~~~l~~~~~~~~~r~~al~~ 153 (462)
T 1ibr_B 78 QRWLAIDANARREVKNYVLQTLGTE-TYRP-SSASQCVAGIACAEIPV--NQWPELIPQLVANVTNPNSTEHMKESTLEA 153 (462)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTCC-CSSS-CSHHHHHHHHHHHHGGG--TCCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHHhCCC-Cchh-hHHHHHHHHHHHHhccc--cccHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 344555555556677777654 3456 88999999999886432 35788999999998887 88999999999
Q ss_pred HHHHHHhC-CCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHH
Q psy14676 183 CEAFVQRC-PKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVR 261 (1827)
Q Consensus 183 le~~~~~~-p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVR 261 (1827)
+..+++.+ |+.+.+|++.+++.+++.+..+ +.++.||
T Consensus 154 l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~------------------------------------------~~~~~vr 191 (462)
T 1ibr_B 154 IGYICQDIDPEQLQDKSNEILTAIIQGMRKE------------------------------------------EPSNNVK 191 (462)
T ss_dssp HHHHHHHSCGGGTGGGHHHHHHHHHHHHSTT------------------------------------------CCCHHHH
T ss_pred HHHHHHhCCchhhHhHHHHHHHHHHHHhCCC------------------------------------------CCCHHHH
Confidence 99999987 6778899999999999887421 0135799
Q ss_pred HHHHHHHHHHHHHcCCchhh--hHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhh
Q psy14676 262 RAAAKCLEAIIATRRDLIGD--MYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCL 339 (1827)
Q Consensus 262 raAak~L~~l~~~~~~~l~~--~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1827)
.+|++++..++....+.+.. +.+.+++.+...+.+.+++||..++.++..++.... ..
T Consensus 192 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~--------------------~~ 251 (462)
T 1ibr_B 192 LAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY--------------------QY 251 (462)
T ss_dssp HHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG--------------------GG
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH--------------------HH
Confidence 99999999876432211111 123357777777888999999999999999986432 23
Q ss_pred HHhhhH-HHHHHHHHHhccCCHhHHHHHHHHHHHHHHhC---------------------cccccCchhhHHHHHHHHhh
Q psy14676 340 LSTQVP-SLVKALQCQLREKSIRTRQDCLALLRELVQTL---------------------PGCLAPSLPALIPDVTSVAE 397 (1827)
Q Consensus 340 l~~~lp-~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl---------------------~~~l~~~l~~Llp~i~~~L~ 397 (1827)
+.++++ .+++.++..++|.++.||..++.++..++... ...+.+|++.++|.+.+.+.
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~ 331 (462)
T 1ibr_B 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT 331 (462)
T ss_dssp CTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHH
Confidence 445667 88888888899999999999999998888753 01123466889998888873
Q ss_pred hhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcch
Q psy14676 398 WDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKER 477 (1827)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~ 477 (1827)
+. ++ | +++..|.+|.+|..++..++...|+ ..++.++|.+...+++.
T Consensus 332 ~~-----------------d~----------d---~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~~ 378 (462)
T 1ibr_B 332 KQ-----------------DE----------N---DDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNP 378 (462)
T ss_dssp CC-----------------CS----------S---CCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTCS
T ss_pred hc-----------------cc----------c---cccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCC
Confidence 10 00 0 0123588999999999999998884 45567788888899999
Q ss_pred hhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCC
Q psy14676 478 EENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSS 557 (1827)
Q Consensus 478 ~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~ 557 (1827)
++++|.+|+.+++.+.+.... ..+
T Consensus 379 ~~~~r~aal~~l~~l~~~~~~-~~~------------------------------------------------------- 402 (462)
T 1ibr_B 379 DWRYRDAAVMAFGCILEGPEP-SQL------------------------------------------------------- 402 (462)
T ss_dssp SHHHHHHHHHHHHHTSSSSCT-TTT-------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHHhcCCcH-HHH-------------------------------------------------------
Confidence 999999999999888763220 000
Q ss_pred CccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccch
Q psy14676 558 DKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDG 637 (1827)
Q Consensus 558 dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~ 637 (1827)
....+++++.+..+++|++..||..|..+||.+++.++.. ++..+|++.+
T Consensus 403 ------------------------~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~------~~~~~~l~~l 452 (462)
T 1ibr_B 403 ------------------------KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA------AINDVYLAPL 452 (462)
T ss_dssp ------------------------CTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG------CCSTTTHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccc------cccHHHHHHH
Confidence 0012457788889999999999999999999999887751 1123677777
Q ss_pred hhhhhhhh
Q psy14676 638 IPILGSFL 645 (1827)
Q Consensus 638 i~~l~~~l 645 (1827)
++.|...|
T Consensus 453 l~~Ll~~L 460 (462)
T 1ibr_B 453 LQCLIEGL 460 (462)
T ss_dssp HHHHHCC-
T ss_pred HHHHHHHh
Confidence 77776554
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-15 Score=208.42 Aligned_cols=440 Identities=12% Similarity=0.138 Sum_probs=279.2
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHhhccC------CCCc-hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhc
Q psy14676 40 GKLSTAIEK-QEDVSVQLEALDILSDLLSRFGA------LLPS-FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCN 111 (1827)
Q Consensus 40 P~Ll~~l~~-~~~~~v~~~al~iL~~l~~~~~~------~l~~-~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~ 111 (1827)
..|++.+.+ +.+..+|..|.-.|-..+.+.-. .+.+ ....|-..+++.|.++...||..+..+++.++..--
T Consensus 38 ~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~ 117 (960)
T 1wa5_C 38 LTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDF 117 (960)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhC
Confidence 455555533 34688999999999877665432 3444 345677788888776669999999999999998754
Q ss_pred hhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhch---------h----hHHhHHHHHHHHHh---hcccCc---
Q psy14676 112 LQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGH---------R----FAEHIERVMPLILK---YSREED--- 172 (1827)
Q Consensus 112 ~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~---------~----~~p~l~~i~p~l~~---~~~~~~--- 172 (1827)
+..|+.+++.+++.+.++ +...+..++.++..+++.... . +..+++.++.++.. .+++..
T Consensus 118 p~~Wp~ll~~L~~~l~s~-~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~ 196 (960)
T 1wa5_C 118 PDRWPTLLSDLASRLSND-DMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNK 196 (960)
T ss_dssp TTTCTTHHHHHHTTCCSS-CTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--C
T ss_pred ccchhHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 567888999999988653 456788899999999875431 1 22223323333222 233321
Q ss_pred hHHHHH---HHHHHHHHHH----hCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCC
Q psy14676 173 DELREF---CLQACEAFVQ----RCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGE 245 (1827)
Q Consensus 173 delRe~---al~ale~~~~----~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e 245 (1827)
..+|+. ...++..+.. ..|+.+..+++..++.+.+.+.+++.....|. |
T Consensus 197 ~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~---------------------d--- 252 (960)
T 1wa5_C 197 ASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPD---------------------E--- 252 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCc---------------------c---
Confidence 123421 1122222221 22555556677888888888866422100000 0
Q ss_pred CCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcC-----CCCHhHHHHHHHHHHHHHhhhcccC
Q psy14676 246 DDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFK-----EREENVKSDIFHAYMALLKGTRTFS 320 (1827)
Q Consensus 246 ~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~-----e~ee~VR~aa~~al~~ll~~~~~~~ 320 (1827)
+++....|++|+.+.++|..++..+++.+.++.+.+++.+.+.+. ..++.++..++..|..+++...
T Consensus 253 -----~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~--- 324 (960)
T 1wa5_C 253 -----TEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPK--- 324 (960)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHH---
T ss_pred -----cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHh---
Confidence 001123589999999999999999998888888888887776653 5678999999999988874211
Q ss_pred CCCCCCCCCCCCCCChHhhHH--hhhHHHH-HHHHHHhc-----------------------cCCHhHHHHHHHHHHHHH
Q psy14676 321 PLTPSDPNQMDQEDSPLCLLS--TQVPSLV-KALQCQLR-----------------------EKSIRTRQDCLALLRELV 374 (1827)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~l~--~~lp~Iv-~~l~~~L~-----------------------d~~~~vR~a~~~ll~~L~ 374 (1827)
....+. +.++.++ +.+++.|. ++...+|.++..++..++
T Consensus 325 ---------------~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~ 389 (960)
T 1wa5_C 325 ---------------YFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELK 389 (960)
T ss_dssp ---------------HHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHH
T ss_pred ---------------HHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHH
Confidence 112333 5666666 45555442 112257889999999999
Q ss_pred HhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHH
Q psy14676 375 QTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIAT 454 (1827)
Q Consensus 375 ~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~ 454 (1827)
...+.. .++.+++.+.+.++.... +...+|+.|.+|+-+++.++..
T Consensus 390 ~~~~~~---v~~~~l~~i~~~l~~~~~-------------------------------~~~~~w~~reaal~algaia~~ 435 (960)
T 1wa5_C 390 EKNEVL---VTNIFLAHMKGFVDQYMS-------------------------------DPSKNWKFKDLYIYLFTALAIN 435 (960)
T ss_dssp HHCHHH---HHHHHHHHHHHHHHHHHC-----------------------------------CHHHHHHHHHHHHHHHBS
T ss_pred HHcchh---HHHHHHHHHHHHHHHhcc-------------------------------CcchhHHHHHHHHHHHHHHHHH
Confidence 998743 356677777666642100 0123599999999999999843
Q ss_pred h-----h-h------hhhhhHHhhhhhHHHhhcch---hhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccch
Q psy14676 455 R-----R-D------LIGDMYRLVSPPLIARFKER---EENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCL 519 (1827)
Q Consensus 455 ~-----~-~------~f~~~~~~l~~~L~~~~~d~---~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~ 519 (1827)
. | . .+.+++.. .+++.+++. ++.||..|+.+++.+.+.+.
T Consensus 436 ~~~~~~~~~~~~~~~~l~~~l~~---~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~---------------------- 490 (960)
T 1wa5_C 436 GNITNAGVSSTNNLLNVVDFFTK---EIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---------------------- 490 (960)
T ss_dssp SCCBTTBCCCBCTTCCHHHHHHH---HTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC----------------------
T ss_pred hccccCCcccccccccHHHHHHH---HhHHHhcCCCCCCceehHHHHHHHHHHHhhCC----------------------
Confidence 1 2 1 34444332 233344555 88888888877766653210
Q ss_pred hhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcc
Q psy14676 520 LSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDK 599 (1827)
Q Consensus 520 ~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~ 599 (1827)
+.....+++.+++++.|.
T Consensus 491 --------------------------------------------------------------~~~l~~~l~~l~~~L~d~ 508 (960)
T 1wa5_C 491 --------------------------------------------------------------KAQLIELMPILATFLQTD 508 (960)
T ss_dssp --------------------------------------------------------------HHHHHHHHHHHHHHTTCS
T ss_pred --------------------------------------------------------------HHHHHHHHHHHHHHhCCC
Confidence 112345777888888898
Q ss_pred hhhHHHHHHHhhhhHHHHhhhh-hc-Cc-ccccccccccchhhhhhhhhhhh
Q psy14676 600 NGEVQNLAVKCLGPLFKALTKI-AA-SP-LRIDLRPILTDGIPILGSFLRKN 648 (1827)
Q Consensus 600 ~~eV~~~A~~~lg~l~~~~~~~-~~-~~-~~~dl~~~l~~~i~~l~~~l~~~ 648 (1827)
+..||..|..++..++...... .. .. -+.++.||++.+++.|...+++.
T Consensus 509 ~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~ 560 (960)
T 1wa5_C 509 EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKH 560 (960)
T ss_dssp CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTT
T ss_pred ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhc
Confidence 8999999999998886532100 00 01 12457899999999998887774
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-15 Score=211.88 Aligned_cols=571 Identities=12% Similarity=0.075 Sum_probs=349.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCC----Ch-h---hhhhHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHHHhh-c
Q psy14676 6 EQLRDISSIGLKTVISELPLG----SN-A---LAANVCRRITGKLSTAIEKQED-------VSVQLEALDILSDLLSR-F 69 (1827)
Q Consensus 6 ~~~Rdi~~~~Lktvi~~lp~~----~~-~---~~~~v~~~L~P~Ll~~l~~~~~-------~~v~~~al~iL~~l~~~-~ 69 (1827)
+..+.+.-..|+++.+|+-.. .. . ......+.+++.+.+.+++..+ ..++..++.++...+.. .
T Consensus 142 ~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ 221 (971)
T 2x1g_F 142 DVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIG 221 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCC
Confidence 456777777888887664211 10 0 0011234555555555533222 27889999999988875 2
Q ss_pred cCCCCchhHHHHHHHhhhc----------------CCCCHHHHHHHHHHHHHHHHhhch----hHHHHHHHHHHHhc---
Q psy14676 70 GALLPSFHFVILTALLPQL----------------SSPRQAVRKRTIVALSHLVMSCNL----QLYTKLIDFLLEGL--- 126 (1827)
Q Consensus 70 ~~~l~~~~~~il~~ll~~L----------------~~~~~~VRk~Ai~aL~~l~~~~~~----~~~~~l~~~ll~~L--- 126 (1827)
.|. . ....+++.++. | .++.+.+|+.|+.|+..++..-.. ..+..+++.++...
T Consensus 222 ip~-~-~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~ 298 (971)
T 2x1g_F 222 YTI-E-GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEI 298 (971)
T ss_dssp CCG-G-GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred cCc-c-ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHH
Confidence 222 1 44567777776 5 124679999999999999984321 23444444444311
Q ss_pred c---CCCC---HHHHHHHHHHHHHHHHHhchhhH-----------HhHHHHHHHHHhhccc-----CchHHHHHHHHHHH
Q psy14676 127 T---TNKS---TSTNRTYIQCFAAICRQAGHRFA-----------EHIERVMPLILKYSRE-----EDDELREFCLQACE 184 (1827)
Q Consensus 127 ~---~~~~---~~~r~~ai~~l~~la~~~~~~~~-----------p~l~~i~p~l~~~~~~-----~~delRe~al~ale 184 (1827)
. .+.+ ......++..+..+++.....+. +++..+++.+++.+.. ++++++..|+..+.
T Consensus 299 ~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~ 378 (971)
T 2x1g_F 299 TKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWY 378 (971)
T ss_dssp HHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHH
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHH
Confidence 0 2223 36778888999988876655544 6788889988886632 46777766666554
Q ss_pred HHHHhC---------C---CccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCC
Q psy14676 185 AFVQRC---------P---KEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSD 252 (1827)
Q Consensus 185 ~~~~~~---------p---~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sd 252 (1827)
.++... + ..+.|+++.+++.+++.+.|+++. ++ + +++ .+
T Consensus 379 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~------~~----------~------~~d-------~~ 429 (971)
T 2x1g_F 379 MLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEK------SL----------A------KWS-------SD 429 (971)
T ss_dssp HHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTT------TT----------S------CSC-------HH
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcc------cc----------c------ccC-------Hh
Confidence 444411 1 234689999999999988763210 00 0 000 00
Q ss_pred CccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCC-----CCHhHHHHHHHHHHHHHhhhcccCCCCCCCC
Q psy14676 253 DDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKE-----REENVKSDIFHAYMALLKGTRTFSPLTPSDP 327 (1827)
Q Consensus 253 ddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e-----~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~ 327 (1827)
+++..-..|++++.+|..++...++ .+++.+++.+...+.. .+|..|.+++.+++++.+..
T Consensus 430 e~~~f~~~R~~~~~~l~~~~~~~~~---~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~----------- 495 (971)
T 2x1g_F 430 DLECFRCYRQDISDTFMYCYDVLND---YILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHF----------- 495 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTT---HHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhc-----------
Confidence 0111236899999999998877663 3455555555555432 78999999999999887432
Q ss_pred CCCCCCCChHhhHHhhhHHHHHHHHHHhc--cCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCC
Q psy14676 328 NQMDQEDSPLCLLSTQVPSLVKALQCQLR--EKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLG 405 (1827)
Q Consensus 328 ~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~--d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~ 405 (1827)
.....+.++.+++ ++..+. |.++.||..++..++.++..+.... +|++.++|.+...+ +
T Consensus 496 ---------~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l-~------- 556 (971)
T 2x1g_F 496 ---------GGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGL-N------- 556 (971)
T ss_dssp --------------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H-------
T ss_pred ---------ChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHh-C-------
Confidence 1222457888888 445555 5699999999999999998876543 78999999999887 1
Q ss_pred CCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcc--hhhhhHH
Q psy14676 406 GEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKE--REENVKS 483 (1827)
Q Consensus 406 ~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d--~~~~Vr~ 483 (1827)
.+|+.+|+.++..+++..+..+.||++.++..+...+.. ...+.+.
T Consensus 557 --------------------------------~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~ 604 (971)
T 2x1g_F 557 --------------------------------SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSV 604 (971)
T ss_dssp --------------------------------SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHH
T ss_pred --------------------------------hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHH
Confidence 127889999999999999988999999999999998876 3568889
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhh-----hhhHHhHHHH---HHHhhc
Q psy14676 484 DIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKS-----IRTRQDCLAL---LRELMT 555 (1827)
Q Consensus 484 ~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~-----~~~~~~~l~~---l~~~~~ 555 (1827)
.++++++.++...+. . ... ..+...+.++++.+........ ......++.. +.+.++
T Consensus 605 ~~~~ai~~i~~~~~~---~-----------~~~-~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~ 669 (971)
T 2x1g_F 605 RLMFSIGKLMSLLRP---E-----------EIP-KYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLN 669 (971)
T ss_dssp HHHHHHHHHHHTSCT---T-----------HHH-HHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCH---H-----------HHH-HHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcC
Confidence 999998888864430 0 000 1133444555555554432211 0111122222 222222
Q ss_pred CCCccccccchHHHHHHHhhhc--cccchhhHHHHHHHHHHHhhcc--hhhHHHHHHHhhhhHHHHhhhhhcCccccccc
Q psy14676 556 SSDKDFRFMATNDLMSELQKDS--IKLDDDSERKVVKMLLRLLEDK--NGEVQNLAVKCLGPLFKALTKIAASPLRIDLR 631 (1827)
Q Consensus 556 d~dpd~Rf~a~~dl~~~~~~~~--~~~d~~~~~~i~~~l~~~l~D~--~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~ 631 (1827)
.....-+ ... .+.-..+..++++.+..++++. +.+|.+.+..++|++++.+++ ++.
T Consensus 670 ~~~~~~~------------~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~--------~~~ 729 (971)
T 2x1g_F 670 TDVDEQA------------TDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRS--------SFQ 729 (971)
T ss_dssp C-------------------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC----------C
T ss_pred CCcCccc------------ccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhh--------hcc
Confidence 1100000 000 0111235677888888888653 579999999999999998874 567
Q ss_pred ccccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCc--ccHH---HHHHHHHHhCcCCC-------cchhhHHHHHH
Q psy14676 632 PILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSA--ISTE---MLNKVTVELAPLVS-------ESDLHIAQLTL 699 (1827)
Q Consensus 632 ~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~--~~~~---~~~~v~~~~~~~~~-------~~~~~i~~~a~ 699 (1827)
||+|.+++.+...++...- ...+.+++.++..|+.. +.+. .+..+...+..+++ +.+++++...+
T Consensus 730 p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f 806 (971)
T 2x1g_F 730 PMLQDLCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFF 806 (971)
T ss_dssp THHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHH
Confidence 8999999998877776421 35678888888888762 1111 11122222211111 23667888888
Q ss_pred HHHhhhhccCCC
Q psy14676 700 TLLTSIAKIQPN 711 (1827)
Q Consensus 700 ~~~~~i~~~~~~ 711 (1827)
.+++.+....|.
T Consensus 807 ~ll~~~l~~~p~ 818 (971)
T 2x1g_F 807 GCLTQIIKKIPQ 818 (971)
T ss_dssp HHHHHHHHSSGG
T ss_pred HHHHHHHHhCcH
Confidence 888877765443
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.1e-14 Score=197.10 Aligned_cols=384 Identities=12% Similarity=0.082 Sum_probs=215.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHhhhcCC---CCHHHHHHHHHHHHHHHHhhchhHHH
Q psy14676 41 KLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTALLPQLSS---PRQAVRKRTIVALSHLVMSCNLQLYT 116 (1827)
Q Consensus 41 ~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll~~L~~---~~~~VRk~Ai~aL~~l~~~~~~~~~~ 116 (1827)
.+...+....++.+|.-|..+|-..+.+--..+.+ ....+-+.+++.+.+ ..+.||.+...++..++...-+ .+.
T Consensus 43 ~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp 121 (971)
T 2x1g_F 43 FSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWP 121 (971)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C--
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-ccc
Confidence 44455555568899999999998888765455544 444556666655532 3589999999999999988655 688
Q ss_pred HHHHHHHHhccCC-----CCHHHHHHHHHHHHHHHHHhc------------hhhHHhHHHHHHHHHhhcccC-c------
Q psy14676 117 KLIDFLLEGLTTN-----KSTSTNRTYIQCFAAICRQAG------------HRFAEHIERVMPLILKYSREE-D------ 172 (1827)
Q Consensus 117 ~l~~~ll~~L~~~-----~~~~~r~~ai~~l~~la~~~~------------~~~~p~l~~i~p~l~~~~~~~-~------ 172 (1827)
.+++.+++.+.++ .+...+..++..+..+++... +.+..+++.+++++.+.++.. .
T Consensus 122 ~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~ 201 (971)
T 2x1g_F 122 GAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAE 201 (971)
T ss_dssp ----HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcc
Confidence 8888888877542 135578888999998886421 335566778888777766421 1
Q ss_pred -hHHHHHHHHHHHHHHH--hCCCccccchHHHHHHHHHHh--cc-CCCCCcccccccCCCCCCCCCCCCcccCCCCCCCC
Q psy14676 173 -DELREFCLQACEAFVQ--RCPKEITPHIQSITELCLTYI--TY-DPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGED 246 (1827)
Q Consensus 173 -delRe~al~ale~~~~--~~p~e~~p~l~~ii~~ll~~l--~~-dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~ 246 (1827)
.+++..++.++..|+. .+|.. ....+++.++. + ++ .|.+..++ . .
T Consensus 202 ~~~~~~~al~~l~~~~~~~~ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~--~-------------------~---- 252 (971)
T 2x1g_F 202 AYSNMNRAVKCVGTWIKNIGYTIE---GCVTITAVLLE-VVHKCYWPCIHAGD--G-------------------C---- 252 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCGG---GHHHHHHHHHH-HHHHHHSSSCC-----C-------------------C----
T ss_pred chhHHHHHHHHHHHHHhhCCcCcc---ccccHHHHHHh-hhhhhccccccccc--c-------------------c----
Confidence 2789999999999998 46665 45677787776 4 11 11110000 0 0
Q ss_pred CCCCCCCccchhhHHHHHHHHHHHHHHHcC-CchhhhHHhhhHHHHh-------hcCCCC---HhHHHHHHHHHHHHHhh
Q psy14676 247 DNEYSDDDDMSWKVRRAAAKCLEAIIATRR-DLIGDMYRLVSPPLIA-------RFKERE---ENVKSDIFHAYMALLKG 315 (1827)
Q Consensus 247 ~~e~sdddD~sWkVRraAak~L~~l~~~~~-~~l~~~~~~v~p~L~~-------~l~e~e---e~VR~aa~~al~~ll~~ 315 (1827)
+ .+..-.+|.+|.+|+..++.... .-..+.+..++|.+.. ...+.+ +++.......+..+.+.
T Consensus 253 ----~--~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~ 326 (971)
T 2x1g_F 253 ----M--TADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVER 326 (971)
T ss_dssp ----C--CHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHH
T ss_pred ----c--CcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 0 00112689999999999997432 1122344444444433 223444 25666666666655532
Q ss_pred hcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhc-----cCCHhHHHHHHHHHHHHHHhC---------c---
Q psy14676 316 TRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLR-----EKSIRTRQDCLALLRELVQTL---------P--- 378 (1827)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~-----d~~~~vR~a~~~ll~~L~~vl---------~--- 378 (1827)
...... +...+ ......+.+..+++.+++... ..+.+|+..++.++..+++.. +
T Consensus 327 ~~~~~~------~~~~~---~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~ 397 (971)
T 2x1g_F 327 HSTLLL------SGITS---ADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCW 397 (971)
T ss_dssp THHHHH------HHHHT---CCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHH
T ss_pred HHHHHH------HHhcc---CcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHH
Confidence 110000 00000 000122466777888887663 356789998888888877622 1
Q ss_pred ccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhh
Q psy14676 379 GCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDL 458 (1827)
Q Consensus 379 ~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~ 458 (1827)
..+.++++.+++.+..-+.. + +++|.++ + +.+| +++ --..|.++.+++..++...|+.
T Consensus 398 ~~~~~~~~~ll~~l~~~~~~--------p--------~~~~~~~-~-d~~e---~~~-f~~~R~~~~~~l~~~~~~~~~~ 455 (971)
T 2x1g_F 398 EYIKPLYAHLTRILVRKSEQ--------P--------DEKSLAK-W-SSDD---LEC-FRCYRQDISDTFMYCYDVLNDY 455 (971)
T ss_dssp HHHHHHHHHHHHHHHHHTSC--------C--------CTTTTSC-S-CHHH---HHH-HHHHHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHHHHHHHHHHHHHhcC--------C--------Ccccccc-c-CHhH---HHH-HHHHHHHHHHHHHHHHHHHhHH
Confidence 12246666777776665421 0 0000000 0 0000 111 1257888999998888777622
Q ss_pred hhhhHHhhhhhHHHhhcc-----hhhhhHHHHHHHHHHHHh
Q psy14676 459 IGDMYRLVSPPLIARFKE-----REENVKSDIFHAYMALLK 494 (1827)
Q Consensus 459 f~~~~~~l~~~L~~~~~d-----~~~~Vr~~a~~~l~~L~~ 494 (1827)
+. +.+++.+.+.+.. ..++.|++++-.++.+.+
T Consensus 456 ~l---~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae 493 (971)
T 2x1g_F 456 IL---EILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAE 493 (971)
T ss_dssp HH---HHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTT
T ss_pred HH---HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHh
Confidence 22 2222333333222 355667777766555543
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=99.74 E-value=3.1e-14 Score=198.22 Aligned_cols=294 Identities=12% Similarity=0.105 Sum_probs=186.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHhhhcCC---CCHHHHHHHHHHHHHHHHhhchhHHH
Q psy14676 41 KLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTALLPQLSS---PRQAVRKRTIVALSHLVMSCNLQLYT 116 (1827)
Q Consensus 41 ~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll~~L~~---~~~~VRk~Ai~aL~~l~~~~~~~~~~ 116 (1827)
.+...+++..++.+|.-|...|-..+.+--..+.+ ....+-+.+++.+.+ ..+.||.+...+++.++...-++.+.
T Consensus 61 ~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp 140 (963)
T 2x19_B 61 FSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWP 140 (963)
T ss_dssp HHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTST
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccc
Confidence 33444444558899999999998887765445544 344555555555532 35899999999999999876555577
Q ss_pred HHHHHHHHhccCC----CCHHHHHHHHHHHHHHHHHh-------------chhhHHhHHHHHHHHHhhcccC--chHHHH
Q psy14676 117 KLIDFLLEGLTTN----KSTSTNRTYIQCFAAICRQA-------------GHRFAEHIERVMPLILKYSREE--DDELRE 177 (1827)
Q Consensus 117 ~l~~~ll~~L~~~----~~~~~r~~ai~~l~~la~~~-------------~~~~~p~l~~i~p~l~~~~~~~--~delRe 177 (1827)
.+++.+++.+.++ ++...+..++..+..+++.. .+.+..+++.+++++.+.++.. +++++.
T Consensus 141 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~ 220 (963)
T 2x19_B 141 CAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQ 220 (963)
T ss_dssp THHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHH
T ss_pred hHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 8888888877541 24567888999999998643 1234567788888888777543 235888
Q ss_pred HHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccch
Q psy14676 178 FCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMS 257 (1827)
Q Consensus 178 ~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~s 257 (1827)
.++.++..|+. ++..+. -.+.+++.+++.+. .
T Consensus 221 ~~l~~l~~wi~-~~~~~~-~~~~ll~~l~~~l~----------------------------------------------~ 252 (963)
T 2x19_B 221 KVLKCFSSWVQ-LEVPLQ-DCEALIQAAFAALQ----------------------------------------------D 252 (963)
T ss_dssp HHHHHHHHHHT-SSCCGG-GTHHHHHHHHHHTT----------------------------------------------S
T ss_pred HHHHHHHHHHc-CCCCcc-cchHHHHHHHHHhC----------------------------------------------C
Confidence 89999988987 544322 22667888876651 1
Q ss_pred hhHHHHHHHHHHHHHHHcC-CchhhhHHhhhHHHHhh-------cCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCC
Q psy14676 258 WKVRRAAAKCLEAIIATRR-DLIGDMYRLVSPPLIAR-------FKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQ 329 (1827)
Q Consensus 258 WkVRraAak~L~~l~~~~~-~~l~~~~~~v~p~L~~~-------l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~ 329 (1827)
|.+|.+|.+|+..++.... ....+++..++|.++.. ....+.+.....+..+..++........
T Consensus 253 ~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~-------- 324 (963)
T 2x19_B 253 SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALL-------- 324 (963)
T ss_dssp TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred chHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHH--------
Confidence 3578899999999997532 22234444444444432 2334444555555555555532110000
Q ss_pred CCCCCChHhhHHhhhHHHHHHHHHHhcc-----CCHhHHHHHHHHHHHHHHhC--------cc---cccCchhhHHHHHH
Q psy14676 330 MDQEDSPLCLLSTQVPSLVKALQCQLRE-----KSIRTRQDCLALLRELVQTL--------PG---CLAPSLPALIPDVT 393 (1827)
Q Consensus 330 ~~~~~~~~~~l~~~lp~Iv~~l~~~L~d-----~~~~vR~a~~~ll~~L~~vl--------~~---~l~~~l~~Llp~i~ 393 (1827)
.+ ....+.+..+++.+++.... .+.+++..|+.+...++... +. .+.++++.|++.+.
T Consensus 325 ----~~--~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll 398 (963)
T 2x19_B 325 ----DQ--VEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLL 398 (963)
T ss_dssp ----HC--GGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cC--ccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 00 00124567778888877664 45677888888888877632 11 23567777777776
Q ss_pred HHh
Q psy14676 394 SVA 396 (1827)
Q Consensus 394 ~~L 396 (1827)
.-+
T Consensus 399 ~~~ 401 (963)
T 2x19_B 399 HKA 401 (963)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-13 Score=191.67 Aligned_cols=738 Identities=12% Similarity=0.075 Sum_probs=431.2
Q ss_pred HHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhh-hhhhhhhhhHHHHHHHH
Q psy14676 586 RKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRK-NQRALKLSTLLLLDTLL 664 (1827)
Q Consensus 586 ~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~-~~~~lk~~~l~~l~~l~ 664 (1827)
.++..++..+....+++.|..|.+.|..+-+. |+..+.+..+|.+ .+...|+.++..+...+
T Consensus 24 ~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~-----------------p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i 86 (963)
T 2x19_B 24 ENVEKALHQLYYDPNIENKNLAQKWLMQAQVS-----------------PQAWHFSWQLLQPDKVPEIQYFGASALHIKI 86 (963)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS-----------------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-----------------HHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 34445555556667888999998877654221 2233344444443 35567888777777666
Q ss_pred hhCCCcccHHHHHHHHHHhCcCCCc---chhhHHHHHHHHHhhhhcc-CCCccchhhhhhhhHHHhhhhccccc---chh
Q psy14676 665 VNYPSAISTEMLNKVTVELAPLVSE---SDLHIAQLTLTLLTSIAKI-QPNALVEPAAASILPQVLQIAKSPLL---QGA 737 (1827)
Q Consensus 665 ~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~i~~~a~~~~~~i~~~-~~~~~~~~~~~~llp~ll~l~~s~~~---~~~ 737 (1827)
...-..+++.....++..+..++.. ....++.....++..|+.. -| +.|+.++|.+++.++++.. ...
T Consensus 87 ~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p-----~~Wp~~l~~l~~~~~~~~~~~~~~~ 161 (963)
T 2x19_B 87 SRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMP-----DAWPCAVADMVRLFQAEDSPVDGQG 161 (963)
T ss_dssp HHCGGGSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTT-----TTSTTHHHHHHHHHCC------CHH
T ss_pred HhCHHhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCc-----cccchHHHHHHHHHhhhccCCCcHH
Confidence 5443456666666666666555433 2477888888888887753 22 2599999999997765211 223
Q ss_pred hhhhHHHHHHHHHhhhCC---------------CCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhh---
Q psy14676 738 ALTSMLEFFKSLVLAELP---------------GLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREA--- 799 (1827)
Q Consensus 738 al~~l~~~~~~lv~~~~~---------------~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~--- 799 (1827)
.....+.++..+++.... ...++.+++.+...+..... .......+.+|++..+. .....
T Consensus 162 ~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~-~~~~~~~~l~~l~~wi~-~~~~~~~~ 239 (963)
T 2x19_B 162 RCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSS-PSCVRQKVLKCFSSWVQ-LEVPLQDC 239 (963)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTC-CHHHHHHHHHHHHHHHT-SSCCGGGT
T ss_pred HHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHc-CCCCcccc
Confidence 455667777777742111 12334455554444432211 11244456677755432 11111
Q ss_pred hhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhc----HHHHHHHHHHHHhhh------cCCCC
Q psy14676 800 LPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCN----LQLYTKLIDFLLEGL------TTNKS 869 (1827)
Q Consensus 800 ~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~----~~~~~~l~~~l~~~l------~~~~~ 869 (1827)
.+.++.+++.+.. ..+|..|+.|+..++..-. ...+..+.+.++..+ ..+.+
T Consensus 240 ~~ll~~l~~~l~~------------------~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d 301 (963)
T 2x19_B 240 EALIQAAFAALQD------------------SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD 301 (963)
T ss_dssp HHHHHHHHHHTTS------------------TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC
T ss_pred hHHHHHHHHHhCC------------------chHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC
Confidence 2233444444432 1378889999999987432 234444544444321 01234
Q ss_pred hhhHHHHHHHHHHHHHhccccch------hhhhhhHHHHHHhhcc-----cchHHHHHHHHHHHHHHhhCCCcccccccc
Q psy14676 870 TSTNRTYIQCFAAICRQAGHRFA------EHIERVMPLILKYSRE-----EDDELREFCLQACEAFVQRCPKEITPHIQS 938 (1827)
Q Consensus 870 ~~vr~~~l~~l~~L~~~~~~~~~------~yl~~ilP~ll~~l~d-----~~~~vre~al~Ale~~v~~~~~~i~p~l~~ 938 (1827)
....+.++.++..+.+..+..+. +++..+++.++...+. .+++++ ..++++|...+..... ++
T Consensus 302 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~---~~~l~fw~~l~~~~~~--~~- 375 (963)
T 2x19_B 302 METSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTS---SLTLTFWYTLQDDILS--FE- 375 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGG---GGGHHHHHHHHHHHTT--SC-
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhh---hhhHHHHHHHHHHHHh--hh-
Confidence 46677888888888877665554 6788888888887764 345553 3456666543221000 00
Q ss_pred ccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhc-------
Q psy14676 939 IGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCEC------- 1011 (1827)
Q Consensus 939 i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~------- 1011 (1827)
+ + .+ ......++++++.+++.++..+.-
T Consensus 376 --~----------------------~-~~--------------------~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~ 410 (963)
T 2x19_B 376 --A----------------------E-KQ--------------------AVYQQVYRPVYFQLVDVLLHKAQFPSDEEYG 410 (963)
T ss_dssp --H----------------------H-HH--------------------HHHHHHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred --h----------------------h-hh--------------------HHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 0 0 00 000011222222222222222100
Q ss_pred -----cc---cchhhHHHHHHhhhcccCCCCc----hHHHHHHh----ccCChhhHHHHHHHHHHHHHhccccccccccc
Q psy14676 1012 -----QE---EGTRNVVAECLGKLTLIDPSNL----LPRLQESL----KSNSALMRTTHQSNQTFNVIIQRNDIHNHNEE 1075 (1827)
Q Consensus 1012 -----~e---~~vR~~a~e~Lg~L~~~~~~~l----lP~L~~~L----~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~ 1075 (1827)
++ ..-|..+.++|..++...+..+ ++.+.+.+ .+.+|..|++++.+++.++........++
T Consensus 411 ~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~--- 487 (963)
T 2x19_B 411 FWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDV--- 487 (963)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSH---
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHH---
Confidence 00 1124455667766666555444 44455555 55689999999999999888776655555
Q ss_pred hhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy14676 1076 TSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERA 1155 (1827)
Q Consensus 1076 ~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~A 1155 (1827)
++.+++.+. .+.++.+.||..++.+++.+.+.+.. ...|+..+++.++..+. + +.|+..|
T Consensus 488 -------l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~--------~~~~l~~vl~~l~~~l~--~--~~V~~~A 547 (963)
T 2x19_B 488 -------VPGLIGLIP-RISISNVQLADTVMFTIGALSEWLAD--------HPVMINSVLPLVLHALG--N--PELSVSS 547 (963)
T ss_dssp -------HHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHH--------CHHHHTTTHHHHHHHTT--C--GGGHHHH
T ss_pred -------HHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHh--------CHHHHHHHHHHHHHHhC--C--chHHHHH
Confidence 778877543 45556789999999999999988753 12678888888888885 3 7899999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhh----hhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcc----
Q psy14676 1156 ISCMGQIICNLGDYLKSELPVCLPILLDRLRN----EITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRK---- 1227 (1827)
Q Consensus 1156 i~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~----e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk---- 1227 (1827)
+.++..+....+..+.|+++.++..+...+.+ ...|..+.++++.++......+..+++..+++.+...+..
T Consensus 548 ~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 627 (963)
T 2x19_B 548 VSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEE 627 (963)
T ss_dssp HHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999998888999999999999887764 2358999999999986543345667888887776665532
Q ss_pred --h--hHHHHHHHHHHHHHHHHhCCCCcC---------------------hHhHHHHHHHhhhhcC--CCChhHHHHHHH
Q psy14676 1228 --N--QRALKLSTLLLLDTLLVNYPSAIS---------------------TEMLNKVTVELAPLVS--ESDLHIAQLTLT 1280 (1827)
Q Consensus 1228 --~--~r~lR~~al~aL~~L~~~~~~~l~---------------------~~~~~~ll~~L~~ll~--d~D~~l~~~al~ 1280 (1827)
+ .+..+...+++|+.+++..+...+ ......+++.+..++. ..+..+.+.++.
T Consensus 628 ~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~ 707 (963)
T 2x19_B 628 IPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCA 707 (963)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHH
Confidence 1 233455778888888887664321 1245556666655553 246688888899
Q ss_pred HHHHHHHhCCCccch--hh----------------HHhhhhhc----ccccCC-CchhhHHHHHHHh----cC---CCCH
Q psy14676 1281 LLTSIAKIQPNALVE--PA----------------AASILPQI----GRHTDL-TSVADLKQVILNA----FT---PTSE 1330 (1827)
Q Consensus 1281 ~L~~l~~~~~~~~~~--~~----------------i~~~lgei----G~~~~~-~~~~~l~~~~l~~----~~---~~s~ 1330 (1827)
++..++...+....+ |. +..+++.+ |..-.. +..+.++..++.+ +. .+.+
T Consensus 708 ~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~p 787 (963)
T 2x19_B 708 IFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHP 787 (963)
T ss_dssp HHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCH
T ss_pred HHHHHHHhhcccccccHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCc
Confidence 999888766644322 11 11112222 221000 1122333333332 22 2468
Q ss_pred hHHHHHHHHHhhhhhhh----------hhhhHHHHHHhhhcC-chhhHHHHHHHHHHHhhccccccchhhhhchHHHHHH
Q psy14676 1331 EVKSAASYTLGSIAVGN----------LQQYVPFVLKEIENQ-PKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWA 1399 (1827)
Q Consensus 1331 eVr~aAa~aLG~i~~~~----------l~~~LP~Il~~i~~~-~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~ 1399 (1827)
+++.+....|+.+.... +..+++.++..++.. ....-..++.+.+++...........-+.+|.+.|..
T Consensus 788 d~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 867 (963)
T 2x19_B 788 DIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLI 867 (963)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 99999998888854322 344455555555432 2234456788888876421100001123466777777
Q ss_pred HHhhhhc-CCchhHHHHHHHHHHHhhccCCCcchHHHHHhh
Q psy14676 1400 QLFLHCE-CQEEGTRNVVAECLGKLTLIDPSNLLPRLQESL 1439 (1827)
Q Consensus 1400 ~L~~~~~-~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l 1439 (1827)
.++..+. ......-+..++.|..|...+|..+...+.+.+
T Consensus 868 ~l~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~l~~~l 908 (963)
T 2x19_B 868 AVLEAIGGQASRSLMDCFADILFALNKHCFSLLSMWIKEAL 908 (963)
T ss_dssp HHHHHHTTTSCGGGHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred HHHHHhcccCChhHHHHHHHHHHHHHHHChHHHHHHHHHHh
Confidence 7776653 222334456778887777666665555565555
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.66 E-value=9.7e-15 Score=184.83 Aligned_cols=388 Identities=12% Similarity=0.142 Sum_probs=271.6
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHH
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCR-RITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVI 80 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~-~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~i 80 (1827)
++..++|..+..+|+.+++.-..+ .....+.. .++|.|++.+.++.++.+|..|+.+|+.++..-.+.... .....
T Consensus 31 s~~~~~r~~A~~~L~~l~~~~~~~--~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 108 (450)
T 2jdq_A 31 SKSPEQQLSATQKFRKLLSKEPNP--PIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGA 108 (450)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSSSC--CHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCC--cHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCC
Confidence 456678999999999887622111 12222333 689999999987658999999999999998632221111 12357
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh---HH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHh-chhhHH
Q psy14676 81 LTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ---LY-TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQA-GHRFAE 155 (1827)
Q Consensus 81 l~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~---~~-~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~-~~~~~p 155 (1827)
++.+++.|+++++.||..|+.+|+.++...+.. .+ ...++.++..|.++.+..+|+.++.+++.+++.. +..-..
T Consensus 109 i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 188 (450)
T 2jdq_A 109 VPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFA 188 (450)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 889999999999999999999999999864321 11 1346777777776567899999999999999765 333233
Q ss_pred hHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccc-hHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCC
Q psy14676 156 HIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPH-IQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMD 234 (1827)
Q Consensus 156 ~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~-l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d 234 (1827)
.+..++|.+++.+.++++++|+.+..++..+....++..... -..++|.+++.+..
T Consensus 189 ~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~----------------------- 245 (450)
T 2jdq_A 189 KVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH----------------------- 245 (450)
T ss_dssp GTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTC-----------------------
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCC-----------------------
Confidence 457889999999988899999888887777654322211111 12356666665521
Q ss_pred CcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHH-hhhHHHHhhcCCCCHhHHHHHHHHHHHHH
Q psy14676 235 TEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYR-LVSPPLIARFKEREENVKSDIFHAYMALL 313 (1827)
Q Consensus 235 ~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~-~v~p~L~~~l~e~ee~VR~aa~~al~~ll 313 (1827)
.+|.+|..|+.+|+.++...++....++. .++|.|+..+++.++.+|..++.+++.+.
T Consensus 246 ---------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~ 304 (450)
T 2jdq_A 246 ---------------------NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNIT 304 (450)
T ss_dssp ---------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred ---------------------CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 12689999999999998654432222222 58899999999999999999999999887
Q ss_pred hhhcccCCCCCCCCCCCCCCCChHhhHHhhh-HHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhC-cccccCch-hhHHH
Q psy14676 314 KGTRTFSPLTPSDPNQMDQEDSPLCLLSTQV-PSLVKALQCQLREKSIRTRQDCLALLRELVQTL-PGCLAPSL-PALIP 390 (1827)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-p~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl-~~~l~~~l-~~Llp 390 (1827)
... .......+ ..++|.+++.|++++++||..+...++.++... +......+ ..++|
T Consensus 305 ~~~--------------------~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~ 364 (450)
T 2jdq_A 305 AGN--------------------RAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIK 364 (450)
T ss_dssp TSC--------------------HHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHH
T ss_pred cCC--------------------HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHH
Confidence 311 11112122 257788888888999999998888888888753 22221111 24788
Q ss_pred HHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhh-------hhhhH
Q psy14676 391 DVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDL-------IGDMY 463 (1827)
Q Consensus 391 ~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~-------f~~~~ 463 (1827)
.+..++.+ ..|++|..|+.+|..++...+.. ..+|.
T Consensus 365 ~L~~ll~~-------------------------------------~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~ 407 (450)
T 2jdq_A 365 PLCDLLTV-------------------------------------MDSKIVQVALNGLENILRLGEQEAKRNGTGINPYC 407 (450)
T ss_dssp HHHHGGGS-------------------------------------SCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHH
T ss_pred HHHHHhcC-------------------------------------CCHHHHHHHHHHHHHHHHhchhhhhccccchhHHH
Confidence 88888731 25789999999999999755421 23455
Q ss_pred Hhh-----hhhHHHhhcchhhhhHHHHHHHHHHHH
Q psy14676 464 RLV-----SPPLIARFKEREENVKSDIFHAYMALL 493 (1827)
Q Consensus 464 ~~l-----~~~L~~~~~d~~~~Vr~~a~~~l~~L~ 493 (1827)
..+ ++.+.....+..+.||..|+..+..+.
T Consensus 408 ~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 408 ALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 555 566777677778899999998887776
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-13 Score=181.65 Aligned_cols=392 Identities=13% Similarity=0.122 Sum_probs=275.6
Q ss_pred HHHHHhhhhccccchhhHHHHHHhhhcccC-CCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhh
Q psy14676 1002 WAQLFLHCECQEEGTRNVVAECLGKLTLID-PSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIY 1080 (1827)
Q Consensus 1002 l~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~-~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~ 1080 (1827)
++.+.+-+.++.+.+|..|.++||.+.... .+.++|.+.+.++++++.+|..|+.++..++...++.
T Consensus 109 in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~------------ 176 (618)
T 1w63_A 109 TNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL------------ 176 (618)
T ss_dssp HHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG------------
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH------------
Confidence 455556668888999999999999987432 2457899999999999999999999999887776654
Q ss_pred hhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhh-------------cCC
Q psy14676 1081 SFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKA-------------ADI 1147 (1827)
Q Consensus 1081 ~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~-------------~D~ 1147 (1827)
+..+++.+...+.|+++.|+..|+.++.++... ..+...++..+++.++..|.. ...
T Consensus 177 --v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~--------~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~ 246 (618)
T 1w63_A 177 --MEMFLPATKNLLNEKNHGVLHTSVVLLTEMCER--------SPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGIS 246 (618)
T ss_dssp --GGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS--------HHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSS
T ss_pred --HHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh--------ChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCC
Confidence 445777788889999999999999999887621 001112334444444444431 023
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhh---h--hhhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhh
Q psy14676 1148 DQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRL---R--NEITRLTTVKALTKIAASPLRIDLRPILTDGIPILG 1222 (1827)
Q Consensus 1148 d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L---~--~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~ 1222 (1827)
++-.+-..+.+++.+...-. ...+.+..+|+.++... + +.....+|++++..+... ......++..|.
T Consensus 247 ~~~~q~~il~~L~~l~~~~~-~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~------~~l~~~a~~~L~ 319 (618)
T 1w63_A 247 DPFLQVRILRLLRILGRNDD-DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE------SGLRVLAINILG 319 (618)
T ss_dssp CHHHHHHHHHHHHHHTTTCH-HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC------HHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHH
Confidence 66777778888877654311 12223334455554332 2 234588888888876421 122345677888
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhh
Q psy14676 1223 SFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASIL 1302 (1827)
Q Consensus 1223 ~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~l 1302 (1827)
.++...+..+|..++.+|+.++...+ +.+......+...+.|.|..++..++++|..++..
T Consensus 320 ~~L~~~d~~vr~~aL~~L~~i~~~~p-----~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~-------------- 380 (618)
T 1w63_A 320 RFLLNNDKNIRYVALTSLLKTVQTDH-----NAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNG-------------- 380 (618)
T ss_dssp HHHTCSSTTTHHHHHHHHHHHHHHHH-----HHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS--------------
T ss_pred HHHhCCCCchHHHHHHHHHHHHhhCH-----HHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccc--------------
Confidence 88887888999999999999988633 23333344556778899999999999998877642
Q ss_pred hhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhh---hhhhhhHHHHHHhhhcCc-hhhHHHHHHHHHHHh
Q psy14676 1303 PQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAV---GNLQQYVPFVLKEIENQP-KRQYLLLHSLKEIIS 1378 (1827)
Q Consensus 1303 geiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~---~~l~~~LP~Il~~i~~~~-~~q~~~l~aL~Eii~ 1378 (1827)
.....+++.++..+.+.+.++|..+..++|.++. ++...|++.+++.+...+ ..+.-++.++++++.
T Consensus 381 ---------~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~ 451 (618)
T 1w63_A 381 ---------NNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLIT 451 (618)
T ss_dssp ---------SSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHH
T ss_pred ---------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 1235677888888888999999999999999886 467789999999887643 244557889999987
Q ss_pred hccccccchhhhhc-hHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhc--------------cCCCcchHHHHHhhh--c
Q psy14676 1379 WQSTSTSGVAQLQQ-FVPAIWAQLFLHCECQEEGTRNVVAECLGKLTL--------------IDPSNLLPRLQESLK--S 1441 (1827)
Q Consensus 1379 ~~~~s~~g~~~L~~-~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~--------------~~p~~~lP~L~~~l~--~ 1441 (1827)
+. .+++. .+..++..+...+ ..+....+++.|||..+. +.|..+++.|..+++ .
T Consensus 452 ~~-------p~l~~~~v~~L~~~l~~~~--~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 522 (618)
T 1w63_A 452 NS-------VEMHAYTVQRLYKAILGDY--SQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNM 522 (618)
T ss_dssp HS-------CSTHHHHHHHHHHHHHHCC--SCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTT
T ss_pred cC-------hhHHHHHHHHHHHHHhccc--ccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccC
Confidence 32 23444 5566777666532 244566689999999984 234457777777776 5
Q ss_pred CCHHHHHHHHHHHHHHhh
Q psy14676 1442 NSALMRTTVLTAVKFTIS 1459 (1827)
Q Consensus 1442 ~~~~~R~t~l~Alk~~~~ 1459 (1827)
+++.+|.++++|+-.+..
T Consensus 523 ~~~~vr~~~lta~~Kl~~ 540 (618)
T 1w63_A 523 STSVTRGYALTAIMKLST 540 (618)
T ss_dssp CCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 789999999999944443
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-12 Score=183.05 Aligned_cols=376 Identities=11% Similarity=0.059 Sum_probs=235.7
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCC----------------CCchhHHHHHHHhhhcCC-CCHHHHH
Q psy14676 35 CRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGAL----------------LPSFHFVILTALLPQLSS-PRQAVRK 97 (1827)
Q Consensus 35 ~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~----------------l~~~~~~il~~ll~~L~~-~~~~VRk 97 (1827)
.+.++|.|++.+. .++..++.++.+|..+.+..... +..+.+.+++.+...|++ +++.+++
T Consensus 136 Wp~ll~~L~~~~~--~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~ 213 (1049)
T 3m1i_C 136 WPEFIPELIGSSS--SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIV 213 (1049)
T ss_dssp CTTHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred chHHHHHHHHHHc--cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4668888888885 35667788888888888766531 111233455555555543 4566777
Q ss_pred HHHHHHHHHHHhhchhH----------------------------------------------HHHHHHHHHHhc-----
Q psy14676 98 RTIVALSHLVMSCNLQL----------------------------------------------YTKLIDFLLEGL----- 126 (1827)
Q Consensus 98 ~Ai~aL~~l~~~~~~~~----------------------------------------------~~~l~~~ll~~L----- 126 (1827)
.|+.|+..+...++... +..+++.++..+
T Consensus 214 ~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~ 293 (1049)
T 3m1i_C 214 ATLESLLRYLHWIPYRYIYETNILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVM 293 (1049)
T ss_dssp HHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCCCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhC
Confidence 77777766554433111 111111112211
Q ss_pred ------------cCCCCHHHHHHHHHHHHHHHHHhc------hhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Q psy14676 127 ------------TTNKSTSTNRTYIQCFAAICRQAG------HRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQ 188 (1827)
Q Consensus 127 ------------~~~~~~~~r~~ai~~l~~la~~~~------~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~ 188 (1827)
.++.+.+..+..+..+..++.... ..+.+++..++++++++...++++++..|+..+..+++
T Consensus 294 p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~ 373 (1049)
T 3m1i_C 294 PVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVA 373 (1049)
T ss_dssp CTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 011122334455555555544322 22577888899999988777788888777665555554
Q ss_pred h------CCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHH
Q psy14676 189 R------CPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRR 262 (1827)
Q Consensus 189 ~------~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRr 262 (1827)
. +...+.++++.+++.++..|.|+++ ++|. + ||+.|...++ ++|+.+|..|+
T Consensus 374 ~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed------~~~~------------~---dd~~e~~r~~-~~d~d~~~~~~ 431 (1049)
T 3m1i_C 374 DLFYEPLKKHIYEEICSQLRLVIIENMVRPEE------VLVV------------E---NDEGEIVREF-VKESDTIQLYK 431 (1049)
T ss_dssp HHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTT------CCEE------------E---CTTSCEEECS-SCCHHHHHHHH
T ss_pred HHHhchhHHHHHHHHHHHHHHHHHHhcCCCcc------eeee------------e---CCCCcchHhh-hccchHHHHHH
Confidence 1 2235678999999999999988421 1110 0 0000000111 22344689999
Q ss_pred HHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcC--CCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhH
Q psy14676 263 AAAKCLEAIIATRRDLIGDMYRLVSPPLIARFK--EREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLL 340 (1827)
Q Consensus 263 aAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~--e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l 340 (1827)
++..+|..++...+. +.++.+.+.+.+.+. +.+|..|.+++.+++++.... ....
T Consensus 432 ~~~~~L~~l~~~~~~---~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~--------------------~~~~ 488 (1049)
T 3m1i_C 432 SEREVLVYLTHLNVI---DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTM--------------------SEDT 488 (1049)
T ss_dssp HHHHHHHHHHHHCHH---HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSS--------------------CHHH
T ss_pred HHHHHHHHHHccCHH---HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhccc--------------------Cchh
Confidence 999999999866553 455666677766664 578999999999999776321 1111
Q ss_pred H-hhhHHHHHHHHHHh-----ccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCC
Q psy14676 341 S-TQVPSLVKALQCQL-----REKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMD 414 (1827)
Q Consensus 341 ~-~~lp~Iv~~l~~~L-----~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~ 414 (1827)
. ..++.+++.+.... +|+++.||..++.++++....+... .++++.+++.+...+.
T Consensus 489 e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl~~ll~~l~----------------- 550 (1049)
T 3m1i_C 489 EKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVILKLFEFMH----------------- 550 (1049)
T ss_dssp HHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHHHTT-----------------
T ss_pred hHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhc-----------------
Confidence 2 34788888877643 2567778866666777777655432 3578888888887762
Q ss_pred CcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhh--------hhHHhhhhhHHHhhcchhhhhHHHHH
Q psy14676 415 TEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIG--------DMYRLVSPPLIARFKEREENVKSDIF 486 (1827)
Q Consensus 415 ~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~--------~~~~~l~~~L~~~~~d~~~~Vr~~a~ 486 (1827)
+.+.+||.+|+.++..+++..+..|. ||++.++..+...+......-+...+
T Consensus 551 --------------------~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~ 610 (1049)
T 3m1i_C 551 --------------------ETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFY 610 (1049)
T ss_dssp --------------------SSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHH
T ss_pred --------------------CCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 13567999999999999999887775 99999999888877664443444555
Q ss_pred HHHHHHHhh
Q psy14676 487 HAYMALLKG 495 (1827)
Q Consensus 487 ~~l~~L~~~ 495 (1827)
++++.++..
T Consensus 611 eai~~ii~~ 619 (1049)
T 3m1i_C 611 KACGIIISE 619 (1049)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 665666543
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-13 Score=176.77 Aligned_cols=428 Identities=15% Similarity=0.159 Sum_probs=291.0
Q ss_pred HHHHhhhhccccchhhHHHHHHhhhcccC-CCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhh
Q psy14676 1003 AQLFLHCECQEEGTRNVVAECLGKLTLID-PSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYS 1081 (1827)
Q Consensus 1003 ~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~-~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~ 1081 (1827)
+.+.+-+.++++.+|..|..+||.+.... .+.++|.+.+++.++++.+|..|+.++..++...++.+.+
T Consensus 89 n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~---------- 158 (591)
T 2vgl_B 89 NSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED---------- 158 (591)
T ss_dssp HHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH----------
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc----------
Confidence 44555567788888988889998876432 2457888999999999999999999999887766554221
Q ss_pred hhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCC-cchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy14676 1082 FYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYD-FAPFTSDIYQCTLVRLKAADIDQEVKERAISCMG 1160 (1827)
Q Consensus 1082 ~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~-~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg 1160 (1827)
..+++.+..++.|+++.|+..|+.+++++... .... +.......+..++..+. +.++-.+-..+.+++
T Consensus 159 --~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~-------~~~~~~~~l~~~~~~~Ll~~l~--~~~~~~q~~il~~l~ 227 (591)
T 2vgl_B 159 --QGFLDSLRDLIADSNPMVVANAVAALSEISES-------HPNSNLLDLNPQNINKLLTALN--ECTEWGQIFILDCLS 227 (591)
T ss_dssp --HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS-------CCSCCSCCCHHHHHHHHHHHHH--HCCHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh-------CCCccchhccHHHHHHHHHcCC--CCCchHHHHHHHHHH
Confidence 25889999999999999999999999997632 1111 23445566666777766 556666666666554
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHhhhhhh--hHHHHHHHHHHHhcCC--CccccchhhhhhHhhhhhhhcchhHHHHHHH
Q psy14676 1161 QIICNLGDYLKSELPVCLPILLDRLRNEI--TRLTTVKALTKIAASP--LRIDLRPILTDGIPILGSFLRKNQRALKLST 1236 (1827)
Q Consensus 1161 ~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~--tR~~av~al~~ia~~~--~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~a 1236 (1827)
.+. ..-.+....+++.+...+++.+ .|.+|++++..+.... ...-+......+.+.|..++. .+..+|..+
T Consensus 228 ~l~----~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~a 302 (591)
T 2vgl_B 228 NYN----PKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS-GEPEVQYVA 302 (591)
T ss_dssp TSC----CCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT-SCHHHHHHH
T ss_pred HhC----CCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc-CCccHHHHH
Confidence 432 1111245567777777776544 4999999999887421 111122233445555555544 678999999
Q ss_pred HHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhh
Q psy14676 1237 LLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVAD 1316 (1827)
Q Consensus 1237 l~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~ 1316 (1827)
+.+|..++...+..+.+. + ..+.... +.+..++..++++|..++.. +....
T Consensus 303 L~~l~~i~~~~p~~~~~~-~----~~~~~~~-~d~~~Ir~~al~~L~~l~~~-----------------------~nv~~ 353 (591)
T 2vgl_B 303 LRNINLIVQKRPEILKQE-I----KVFFVKY-NDPIYVKLEKLDIMIRLASQ-----------------------ANIAQ 353 (591)
T ss_dssp HHHHHHHHHHCCSTTTTC-T----TTTSCCT-TSCHHHHHHHHHHHHHTCCS-----------------------STHHH
T ss_pred HHHHHHHHHhChHHHHHH-H----Hhheecc-CChHHHHHHHHHHHHHHCCh-----------------------hhHHH
Confidence 999999999876554432 1 1112222 44589999999888765421 12356
Q ss_pred HHHHHHHhcCCCCHhHHHHHHHHHhhhhhh---hhhhhHHHHHHhhhcCch-hhHHHHHHHHHHHhhccccccchhhhhc
Q psy14676 1317 LKQVILNAFTPTSEEVKSAASYTLGSIAVG---NLQQYVPFVLKEIENQPK-RQYLLLHSLKEIISWQSTSTSGVAQLQQ 1392 (1827)
Q Consensus 1317 l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~---~l~~~LP~Il~~i~~~~~-~q~~~l~aL~Eii~~~~~s~~g~~~L~~ 1392 (1827)
+++.+...+.+.+.++|..++.++|.++.. ....|++.+++.+.+.+. ...-++.++++++.+.. .++.
T Consensus 354 iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p-------~~~~ 426 (591)
T 2vgl_B 354 VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP-------NKYE 426 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC-------SSCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCc-------chHH
Confidence 788888888999999999999999998754 345699999998876432 23334678888886321 1222
Q ss_pred hHHHHHHHHhhhhc-CCchhHHHHHHHHHHHhhccC--CCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhH
Q psy14676 1393 FVPAIWAQLFLHCE-CQEEGTRNVVAECLGKLTLID--PSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDF 1469 (1827)
Q Consensus 1393 ~~~~i~~~L~~~~~-~~~e~vR~~aAecLGkL~~~~--p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l 1469 (1827)
.+...|.+.++ ..+..+|..++.+||..+... +..++..+.+.+...++.+|..+++|+-.+....++..
T Consensus 427 ---~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~---- 499 (591)
T 2vgl_B 427 ---SIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET---- 499 (591)
T ss_dssp ---TTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTHHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT----
T ss_pred ---HHHHHHHHHHHhccCHHHHHHHHHHHHcccccccCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH----
Confidence 12333444443 345668999999999998644 44666666666667899999999999988886543211
Q ss_pred HHHHhhhhhhhhhhcccccChhHHHHHHHHHHHh-hcC-CchHHHHHHHHHhhhhh
Q psy14676 1470 RFMATNDLMSELQKDSIKLDDDSERKVVKMLLRL-LED-KNGEVQNLAVKCLGPLV 1523 (1827)
Q Consensus 1470 ~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~-l~D-~~~~Vr~~a~~~Lg~L~ 1523 (1827)
...+..++.. ..| .+++||..|...++-+.
T Consensus 500 ------------------------~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~ 531 (591)
T 2vgl_B 500 ------------------------QELVQQVLSLATQDSDNPDLRDRGYIYWRLLS 531 (591)
T ss_dssp ------------------------HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTT
T ss_pred ------------------------HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHC
Confidence 1233444544 456 78899999999887774
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=99.63 E-value=8.3e-13 Score=181.11 Aligned_cols=497 Identities=11% Similarity=0.103 Sum_probs=300.9
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhch-hHHHHHHH-----HHH
Q psy14676 50 EDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNL-QLYTKLID-----FLL 123 (1827)
Q Consensus 50 ~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~-~~~~~l~~-----~ll 123 (1827)
.++.++..+|.+|+..+.-....+. ....+++.++..|.+ +.+|..|+.||..++..-.+ +...+++. ..+
T Consensus 205 ~~~~l~~~~L~~l~s~i~wi~~~~i-~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~ 281 (980)
T 3ibv_A 205 KNYGTVGLCLQVYAQWVSWININLI-VNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFF 281 (980)
T ss_dssp TCHHHHHHHHHHHHHHTTTSCHHHH-HCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcCHHhh-hcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHH
Confidence 4778889999999888773222110 235789999988876 78999999999999876432 21122222 222
Q ss_pred HhccC-CCCHHHHHHHHHHHHHHHHHh------c--------hhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Q psy14676 124 EGLTT-NKSTSTNRTYIQCFAAICRQA------G--------HRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQ 188 (1827)
Q Consensus 124 ~~L~~-~~~~~~r~~ai~~l~~la~~~------~--------~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~ 188 (1827)
..+.. +.+.+..+..+..+.+++... + ....+++..++|+++.++..+++++-..++..+-.++.
T Consensus 282 ~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~ 361 (980)
T 3ibv_A 282 SKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLV 361 (980)
T ss_dssp CC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHH
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Confidence 33332 456677777777776665442 1 12347888999999999988888876655554444443
Q ss_pred h---------CCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhh
Q psy14676 189 R---------CPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWK 259 (1827)
Q Consensus 189 ~---------~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWk 259 (1827)
. .+..+.|+++.+++.+.+-|+|++++ +| ++ |+|+ ||++.--.
T Consensus 362 ~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~------~~------------~~---~~d~-------ed~~~F~e 413 (980)
T 3ibv_A 362 SLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQ------EW------------DD---DPDS-------EEEAEFQE 413 (980)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTC------CC------------CC---CSSS-------STHHHHHH
T ss_pred HHHhccccccccHHHHHHHHHHHHHHHHHccCCCcc------cc------------cc---ccch-------hHHHHHHH
Confidence 2 13346789999999999999997532 11 00 0000 11111123
Q ss_pred HHHHHHHHHHHHHHHcCCchhh-hHHhhhHHHHhhcC---CCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCC
Q psy14676 260 VRRAAAKCLEAIIATRRDLIGD-MYRLVSPPLIARFK---EREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDS 335 (1827)
Q Consensus 260 VRraAak~L~~l~~~~~~~l~~-~~~~v~p~L~~~l~---e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~ 335 (1827)
.|+..+..++.++.-.|+.+.+ .|..+.+.+.+.+. ..+|..+++++.+++++.+....... .
T Consensus 414 ~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~---------~---- 480 (980)
T 3ibv_A 414 MRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDA---------F---- 480 (980)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGG---------T----
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcccccc---------c----
Confidence 7777775556665555554333 44477777777663 46799999999999988764321000 0
Q ss_pred hHhhHHhhhHHHHHHHHHHhc-----cCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHH--HhhhhhcccCCCCC
Q psy14676 336 PLCLLSTQVPSLVKALQCQLR-----EKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTS--VAEWDEEEGLGGEG 408 (1827)
Q Consensus 336 ~~~~l~~~lp~Iv~~l~~~L~-----d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~--~L~~~~~~~~~~~~ 408 (1827)
. ......+|.+++.+.+.++ +++++||..++.+++.....+... .++++.+++.+.. .+.
T Consensus 481 ~-~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~-~~~l~~~L~~ll~~~gl~----------- 547 (980)
T 3ibv_A 481 F-NEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE-SAAIPALIEYFVGPRGIH----------- 547 (980)
T ss_dssp B-CSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC-CTTHHHHHHHHTSTTTTT-----------
T ss_pred c-CcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHhcccccc-----------
Confidence 0 0012356777777777766 899999999999999988887532 3455555555444 331
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchh----------
Q psy14676 409 GGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKERE---------- 478 (1827)
Q Consensus 409 ~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~---------- 478 (1827)
+.+-+||.+|..++..|++.++..+.||++.++..+...+.-..
T Consensus 548 --------------------------~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~ 601 (980)
T 3ibv_A 548 --------------------------NTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPV 601 (980)
T ss_dssp --------------------------CCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSS
T ss_pred --------------------------CCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccc
Confidence 12235999999999999999998888988887777766554211
Q ss_pred -----------hhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhh-----h
Q psy14676 479 -----------ENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIR-----T 542 (1827)
Q Consensus 479 -----------~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~-----~ 542 (1827)
.+-+.-.+++++-|+...+. |. + .....++..+.++++++...+...... .
T Consensus 602 ~~~~~~~~~~~~~~ql~L~eaig~li~~~~~--~~----------e-~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~ 668 (980)
T 3ibv_A 602 PTLNSSIRNSDFNSQLYLFETVGVLISSGNL--TP----------E-EQALYCDSLINALIGKANAALSSDLSALENIIS 668 (980)
T ss_dssp CCHHHHHHTTTHHHHHHHHHHHHHHHHHSCC--CH----------H-HHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHH
T ss_pred cchhhhcccCCchHHHHHHHHHHHHHhCCCC--CH----------H-HHHHHHHHHHHHHHHHHHHHHhhcccCccHHHH
Confidence 01233355556666654431 00 0 011234555566666666655321100 1
Q ss_pred HHhH---HHHHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhh--cchhhHHHHHHHhhhhHHHH
Q psy14676 543 RQDC---LALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLE--DKNGEVQNLAVKCLGPLFKA 617 (1827)
Q Consensus 543 ~~~~---l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~--D~~~eV~~~A~~~lg~l~~~ 617 (1827)
.... ++.+.+.+.+... +.. . . ...-.++++.++..++ ..+.+||..+.+++.+++..
T Consensus 669 i~~~i~al~~lakgf~~~~~--~~~--p-~------------~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~ 731 (980)
T 3ibv_A 669 VYCSLMAIGNFAKGFPARGS--EEV--A-W------------LASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINV 731 (980)
T ss_dssp HHHHHHHHHHHHHTSCSCC---CCC--S-H------------HHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhccCCcccC--CCC--c-H------------HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 1112 2333333322200 000 0 0 1234567777777776 45789999999999999988
Q ss_pred hhhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCc
Q psy14676 618 LTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSA 670 (1827)
Q Consensus 618 ~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~ 670 (1827)
++. ++.|++|.+++.+..... ..--..-|-++++++..|+..
T Consensus 732 lg~--------~~~p~lp~~i~~ll~~~~---~~e~~~fL~l~~qli~~f~~~ 773 (980)
T 3ibv_A 732 VGP--------DMLPKVPQLISILLNSID---MNELVDVLSFISQLIHIYKDN 773 (980)
T ss_dssp THH--------HHTTTHHHHHHHHHHHCC---TTTHHHHHHHHHHHHHHTTTT
T ss_pred ccH--------hHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHH
Confidence 885 456778777777663222 112233567888888888764
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-11 Score=168.56 Aligned_cols=501 Identities=13% Similarity=0.084 Sum_probs=291.8
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHhhhcCC----C-----CHHHHHHHHHHHHHHHHhhchhHH
Q psy14676 46 IEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTALLPQLSS----P-----RQAVRKRTIVALSHLVMSCNLQLY 115 (1827)
Q Consensus 46 l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll~~L~~----~-----~~~VRk~Ai~aL~~l~~~~~~~~~ 115 (1827)
+.++.+..+|.-|...|-..+.+.-..+.+ ....+...+++.+.+ + ++.||.+.+.+++.++..--++.+
T Consensus 57 L~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~W 136 (1049)
T 3m1i_C 57 LQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW 136 (1049)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccc
Confidence 334458899999999998877765444544 345666677776653 1 478999999999999988655667
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc----------------hhhHHhHHHHHHHHHhhccc-CchHHHHH
Q psy14676 116 TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG----------------HRFAEHIERVMPLILKYSRE-EDDELREF 178 (1827)
Q Consensus 116 ~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~----------------~~~~p~l~~i~p~l~~~~~~-~~delRe~ 178 (1827)
..+++.+++.+. .+...+..++.++..+++... ..+..+++.+++++.++++. .+.+++..
T Consensus 137 p~ll~~L~~~~~--~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~ 214 (1049)
T 3m1i_C 137 PEFIPELIGSSS--SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVA 214 (1049)
T ss_dssp TTHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred hHHHHHHHHHHc--cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 888888888875 345567788888888886544 34677788888888887754 35788999
Q ss_pred HHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchh
Q psy14676 179 CLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSW 258 (1827)
Q Consensus 179 al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sW 258 (1827)
++.++..|+...|-.. .+-+.+++.+++.+..+ .
T Consensus 215 aL~~l~~~l~wi~~~~-~~~~~ll~~l~~~~l~~---------------------------------------------~ 248 (1049)
T 3m1i_C 215 TLESLLRYLHWIPYRY-IYETNILELLSTKFMTS---------------------------------------------P 248 (1049)
T ss_dssp HHHHHHHHTTTSCTHH-HHSSSHHHHHHTHHHHS---------------------------------------------H
T ss_pred HHHHHHHHHhhCCHHH-HhhhhHHHHHHHHhCCC---------------------------------------------H
Confidence 9999888877655321 01133566655322100 1
Q ss_pred hHHHHHHHHHHHHHHHc-CCc---hhh----hHHhhhHHHHh-----------hc---CCCCHhHHHHHHHHHHHHHhhh
Q psy14676 259 KVRRAAAKCLEAIIATR-RDL---IGD----MYRLVSPPLIA-----------RF---KEREENVKSDIFHAYMALLKGT 316 (1827)
Q Consensus 259 kVRraAak~L~~l~~~~-~~~---l~~----~~~~v~p~L~~-----------~l---~e~ee~VR~aa~~al~~ll~~~ 316 (1827)
.+|.+|.+||..++... ++. +.. ++..++..+.. .+ .+.++++.......+..++...
T Consensus 249 ~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~ 328 (1049)
T 3m1i_C 249 DTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARN 328 (1049)
T ss_dssp HHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 58889999999998763 221 122 22223332222 11 2345556666666665555432
Q ss_pred cccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhC---cc---cccCchhhHHH
Q psy14676 317 RTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTL---PG---CLAPSLPALIP 390 (1827)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl---~~---~l~~~l~~Llp 390 (1827)
..... . . ....+.+..+++.+++....++..++..|+.+...+++.+ |. .+.++++.|++
T Consensus 329 ~~~~~----------~--~--~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~ 394 (1049)
T 3m1i_C 329 RALLE----------S--D--ESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRL 394 (1049)
T ss_dssp HHHHH----------S--C--GGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHH
T ss_pred HHHHc----------C--C--hhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 11100 0 0 1134567788888888877788899999999998888743 22 33466677777
Q ss_pred HHHHHhhhhhcccCCCCCCCCCCCCcccC-CCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhh
Q psy14676 391 DVTSVAEWDEEEGLGGEGGGEGMDTEEED-GEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPP 469 (1827)
Q Consensus 391 ~i~~~L~~~~~~~~~~~~~~~~~~~e~ed-~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~ 469 (1827)
.+..-+.. ++ |++. ++|++|.--++.+| +..|..|.++..+|..++...+....++ +.+.
T Consensus 395 ~ll~~m~~--------~e-------d~~~~~dd~~e~~r~~~~d-~d~~~~~~~~~~~L~~l~~~~~~~~l~~---v~~~ 455 (1049)
T 3m1i_C 395 VIIENMVR--------PE-------EVLVVENDEGEIVREFVKE-SDTIQLYKSEREVLVYLTHLNVIDTEEI---MISK 455 (1049)
T ss_dssp HHHHTCCC--------CT-------TCCEEECTTSCEEECSSCC-HHHHHHHHHHHHHHHHHHHHCHHHHHHH---HHHH
T ss_pred HHHHhcCC--------Cc-------ceeeeeCCCCcchHhhhcc-chHHHHHHHHHHHHHHHHccCHHHHHHH---HHHH
Confidence 66665421 00 0000 01111111122222 2258889899999999987666433322 2333
Q ss_pred HHHhhc--chhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHH
Q psy14676 470 LIARFK--EREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCL 547 (1827)
Q Consensus 470 L~~~~~--d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l 547 (1827)
+-+.+. ...|+.|++++-.++.+....+. ...+...+.+++.+....
T Consensus 456 l~~~l~~~~~~W~~~eaal~algsia~~~~~-------------------~~e~~~l~~v~~~l~~l~------------ 504 (1049)
T 3m1i_C 456 LARQIDGSEWSWHNINTLSWAIGSISGTMSE-------------------DTEKRFVVTVIKDLLDLT------------ 504 (1049)
T ss_dssp HHHHHTSSSCCHHHHHHHHHHHHHTTTSSCH-------------------HHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHhcccCc-------------------hhhHHHHHHHHHHHHHHH------------
Confidence 333332 34678888888877766533220 000111233333332211
Q ss_pred HHHHHhhc--CCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCc
Q psy14676 548 ALLRELMT--SSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASP 625 (1827)
Q Consensus 548 ~~l~~~~~--d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~ 625 (1827)
+.+. ++.|-+|..+...+.+.- ..+...+.+...+++.++.++.|.+.+|+..|..++..+++.++..-...
T Consensus 505 ----~~~~~~~~~~~v~~~~~~~lgry~--~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~ 578 (1049)
T 3m1i_C 505 ----VKKRGKDNKAVVASDIMYVVGQYP--RFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQ 578 (1049)
T ss_dssp ----TSSCSHHHHHHHHHHHHHHHHHCH--HHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSC
T ss_pred ----hhhccccchHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 0000 111111111111111000 01112345678889999999999999999999999999998876532111
Q ss_pred ccccccccccchhhhhhhhhhhhhhhhhhhhHHHHHHHH
Q psy14676 626 LRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLL 664 (1827)
Q Consensus 626 ~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~ 664 (1827)
-.-++.||++.++..+...+.+-+..-....+.++..++
T Consensus 579 ~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii 617 (1049)
T 3m1i_C 579 QPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1049)
T ss_dssp CTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 112345888888888887777643333334444444544
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-13 Score=174.52 Aligned_cols=404 Identities=13% Similarity=0.093 Sum_probs=273.1
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHh-hch---hHHH--HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhH
Q psy14676 81 LTALLPQLSSPRQAVRKRTIVALSHLVMS-CNL---QLYT--KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFA 154 (1827)
Q Consensus 81 l~~ll~~L~~~~~~VRk~Ai~aL~~l~~~-~~~---~~~~--~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~ 154 (1827)
++.+++.|+++++.+|..|+.+|..++.. .++ ..+. ..++.+++.|..+.++.+|..++.+++.++...++...
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 77788888899999999999999998752 121 1222 46777888887665789999999999999975443332
Q ss_pred HhH-HHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccch--HHHHHHHHHHhccCCCCCcccccccCCCCCCCC
Q psy14676 155 EHI-ERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHI--QSITELCLTYITYDPNYNYEDEEEGLGGEGGGE 231 (1827)
Q Consensus 155 p~l-~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l--~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~ 231 (1827)
..+ ..++|.+++.++++++++|+.|..++..+....+. .+..+ ..+++.+++.+..
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~~l~~-------------------- 160 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM-CRDYVLDCNILPPLLQLFSK-------------------- 160 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHHHHHHHTTS--------------------
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHH-HHHHHHHCCCHHHHHHHhcC--------------------
Confidence 222 46899999999989999999999999888764432 11111 2456777766531
Q ss_pred CCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHc-CCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHH
Q psy14676 232 GMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATR-RDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYM 310 (1827)
Q Consensus 232 ~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~-~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~ 310 (1827)
+.+|.+|+.|+.+|+.++... +..-..+...++|.|+..+++.++.+|..++.+++
T Consensus 161 -----------------------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~ 217 (450)
T 2jdq_A 161 -----------------------QNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALS 217 (450)
T ss_dssp -----------------------CCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred -----------------------CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 113689999999999999664 43333455788999999999999999999999999
Q ss_pred HHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCch-hhHH
Q psy14676 311 ALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSL-PALI 389 (1827)
Q Consensus 311 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l-~~Ll 389 (1827)
.+..... + ....+. -..+++.+++.|+++++.+|..++..++.++...+......+ ..++
T Consensus 218 ~l~~~~~----------------~-~~~~~~--~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 278 (450)
T 2jdq_A 218 YLSDGPN----------------D-KIQAVI--DAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSAL 278 (450)
T ss_dssp HHTSSSH----------------H-HHHHHH--HTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHH
T ss_pred HHHCCCc----------------H-HHHHHH--HcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccH
Confidence 8873210 0 011111 123567778888899999999999999888764432111111 2477
Q ss_pred HHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhH-Hhhhh
Q psy14676 390 PDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMY-RLVSP 468 (1827)
Q Consensus 390 p~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~-~~l~~ 468 (1827)
|.+...+.+ .+|.+|..|+.+|+.++..........+ ..++|
T Consensus 279 ~~L~~ll~~-------------------------------------~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 321 (450)
T 2jdq_A 279 QSLLHLLSS-------------------------------------PKESIKKEACWTISNITAGNRAQIQTVIDANIFP 321 (450)
T ss_dssp HHHHHHTTC-------------------------------------SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred HHHHHHHcC-------------------------------------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 888888731 3588999999999999864333333333 36788
Q ss_pred hHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHH
Q psy14676 469 PLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLA 548 (1827)
Q Consensus 469 ~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~ 548 (1827)
.++..+.+..+.||..|..++..+..... + ..++.+.
T Consensus 322 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~---~------------------------~~~~~l~---------------- 358 (450)
T 2jdq_A 322 ALISILQTAEFRTRKEAAWAITNATSGGS---A------------------------EQIKYLV---------------- 358 (450)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHCC---H------------------------HHHHHHH----------------
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHcCCC---H------------------------HHHHHHH----------------
Confidence 88888888889999999988888875321 0 0000000
Q ss_pred HHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccc
Q psy14676 549 LLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRI 628 (1827)
Q Consensus 549 ~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~ 628 (1827)
...+++.|..++.+.+.+|+..|..+|+.++.......... ..
T Consensus 359 ------------------------------------~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~-~~ 401 (450)
T 2jdq_A 359 ------------------------------------ELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRN-GT 401 (450)
T ss_dssp ------------------------------------HHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHS-CS
T ss_pred ------------------------------------HCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhcc-cc
Confidence 11244555666666667777777777777765443211000 00
Q ss_pred cccccccch-----hhhhhhhhhhhhhhhhhhhHHHHHHHH
Q psy14676 629 DLRPILTDG-----IPILGSFLRKNQRALKLSTLLLLDTLL 664 (1827)
Q Consensus 629 dl~~~l~~~-----i~~l~~~l~~~~~~lk~~~l~~l~~l~ 664 (1827)
...+|...+ ++.|..++..++..++..++.+++.++
T Consensus 402 ~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 402 GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp CCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 112333333 577788888888889999998888874
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-13 Score=184.88 Aligned_cols=528 Identities=11% Similarity=0.047 Sum_probs=321.9
Q ss_pred HHHHhhhhccccchhhHHHHHHhhhccc-CCCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhh
Q psy14676 1003 AQLFLHCECQEEGTRNVVAECLGKLTLI-DPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYS 1081 (1827)
Q Consensus 1003 ~~L~~~l~~~e~~vR~~a~e~Lg~L~~~-~~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~ 1081 (1827)
+.++..|.+.++.+|..+.+.++..... .....+|.|.+.+++++..+|+.++..|+.++.+..... ...
T Consensus 118 ~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~---------~i~ 188 (780)
T 2z6g_A 118 PTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH---------AIM 188 (780)
T ss_dssp --------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHH---------HHT
T ss_pred HHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHH---------HHH
Confidence 3444555667777887777777644221 125579999999999899999999999997766432110 011
Q ss_pred hhhhhhHHHHHhhcC-CchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhH--HHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy14676 1082 FYYFLLSPVIASVGD-NFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFT--SDIYQCTLVRLKAADIDQEVKERAISC 1158 (1827)
Q Consensus 1082 ~l~~Lip~l~~~l~D-~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l--~~l~~~ll~~L~~~D~d~eVre~Ai~a 1158 (1827)
..+.+++.++..+.+ .++.++..|+.++..+...- +....+ ...++.++..+. +.+..+|..|+.+
T Consensus 189 ~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~---------~~~~~i~~~g~I~~Lv~lL~--~~~~~v~~~A~~a 257 (780)
T 2z6g_A 189 RSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR---------EGLLAIFKSGGIPALVNMLG--SPVDSVLFHAITT 257 (780)
T ss_dssp TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH---------HHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHH
T ss_pred hccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc---------hhHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHH
Confidence 123578888888864 47899999999988876321 001111 135566666666 5678999999999
Q ss_pred HHHHHHHhhhhhhhh-hhhhHHHHHHhhhhhhh--HHHHHHHHHHHhcCCCccccc-h-hhhhhHhhhhhhhcchh-HHH
Q psy14676 1159 MGQIICNLGDYLKSE-LPVCLPILLDRLRNEIT--RLTTVKALTKIAASPLRIDLR-P-ILTDGIPILGSFLRKNQ-RAL 1232 (1827)
Q Consensus 1159 lg~l~~~~g~~l~~~-l~~lL~~Ll~~L~~e~t--R~~av~al~~ia~~~~~~dl~-p-~~~~~l~~L~~~Lrk~~-r~l 1232 (1827)
|+.+.......-... -..++|.|++.++++.. |..++.++..++.... +.. . .-...++.|..+++..+ ...
T Consensus 258 L~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~--e~~~~i~~~~~i~~Lv~lL~~~~~~~~ 335 (780)
T 2z6g_A 258 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ--ESKLIILASGGPQALVNIMRTYTYEKL 335 (780)
T ss_dssp HHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH--HHHHHHHTTTHHHHHHHHHTTCCCHHH
T ss_pred HHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh--HHHHHHHHcCCHHHHHHHHhcCCHHHH
Confidence 999987643322222 24578889999876543 7777888887764210 000 1 11356777888888654 446
Q ss_pred HHHHHHHHHHHHHhCCCCcChHh-HHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCC
Q psy14676 1233 KLSTLLLLDTLLVNYPSAISTEM-LNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDL 1311 (1827)
Q Consensus 1233 R~~al~aL~~L~~~~~~~l~~~~-~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~ 1311 (1827)
+..+..+|..+..+.. ..... -..+++.|..++.+.+..++..++.+|..++...+..
T Consensus 336 ~~~a~~aL~~Ls~~~~--~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~------------------- 394 (780)
T 2z6g_A 336 LWTTSRVLKVLSVCSS--NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ------------------- 394 (780)
T ss_dssp HHHHHHHHHHHHTSTT--HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC-------------------
T ss_pred HHHHHHHHHHhhcChH--HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh-------------------
Confidence 6677888888775321 11111 1246788899999999999999999999888644321
Q ss_pred CchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhh--------hhhHHHHHHhhhc-C-c-hhhHHHHHHHHHHHhhc
Q psy14676 1312 TSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNL--------QQYVPFVLKEIEN-Q-P-KRQYLLLHSLKEIISWQ 1380 (1827)
Q Consensus 1312 ~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l--------~~~LP~Il~~i~~-~-~-~~q~~~l~aL~Eii~~~ 1380 (1827)
.....+++.+++.+.+++.++|..|+.+|++++.++- ...+|.+++.+.. + . ..+...+++|+.+....
T Consensus 395 ~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~ 474 (780)
T 2z6g_A 395 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 474 (780)
T ss_dssp SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSS
T ss_pred hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence 1125688999999999999999999999999876431 2356778877755 2 2 57778888888774311
Q ss_pred cccccchhhhhc--hHHHHHHHHhhhhcCCc-hhHHHHHHHHHHHhhccCC-------CcchHHHHHhhhcCCHHHHHHH
Q psy14676 1381 STSTSGVAQLQQ--FVPAIWAQLFLHCECQE-EGTRNVVAECLGKLTLIDP-------SNLLPRLQESLKSNSALMRTTV 1450 (1827)
Q Consensus 1381 ~~s~~g~~~L~~--~~~~i~~~L~~~~~~~~-e~vR~~aAecLGkL~~~~p-------~~~lP~L~~~l~~~~~~~R~t~ 1450 (1827)
.. ....+. .....++.|++.+.+.. ..+|..++.+|++|+.... ..++|.|.+++.+.++.+|..+
T Consensus 475 ~~----~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a 550 (780)
T 2z6g_A 475 QD----AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 550 (780)
T ss_dssp TT----HHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTT
T ss_pred ch----HHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHH
Confidence 00 000110 01123556666665544 4799999999999996321 3578999999877655444322
Q ss_pred HHHHHHH-hhhcCCCCChhHHHHHhhhhhhhhhhcccccChh-HHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhh
Q psy14676 1451 LTAVKFT-ISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDD-SERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKE 1528 (1827)
Q Consensus 1451 l~Alk~~-~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~-~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~ 1528 (1827)
..++... +.+ ...++.++..+...|......+. .... ....+++.|+.++.+++++|+.+|+.+|+.|+..-..
T Consensus 551 a~al~nq~~~~--~~~~~~v~~~a~~aL~~La~~~~--~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~ 626 (780)
T 2z6g_A 551 SMGGTQQQFVE--GVRMEEIVEACTGALHILARDIH--NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA 626 (780)
T ss_dssp C------CCST--TCCHHHHHHHHHHHHHHHTTSHH--HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHH
T ss_pred hhccccchhhc--ccChHHHHHHHHHHHHHHhcChh--hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHH
Confidence 2222110 000 00011111111111111000000 0000 1134579999999999999999999999999743111
Q ss_pred h-hHH--HHHHHHHhhhcccccccccCCccchhHHHHHHHhhhhccCCCCcccchhhhhhhhccc-CCccccc
Q psy14676 1529 F-QVE--TIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRNSSSNMKIDTLAFTHTLLTT-HPPAVFH 1597 (1827)
Q Consensus 1529 ~-~~~--~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~~~p~li~~~~~~~~~~~l~~-llp~l~~ 1597 (1827)
. .+. ..+..+...+.+.+ .+||+.|..+|...++++|..+ +..+.. +++.+|.
T Consensus 627 ~~~i~~~g~i~~L~~Ll~~~~--------~~Vr~~A~~aL~~l~~~~~~~~--------~~~l~~~ll~~l~~ 683 (780)
T 2z6g_A 627 AEAIEAEGATAPLTELLHSRN--------EGVATYAAAVLFRMSEDKPQDY--------KKRLSVELTSSLFR 683 (780)
T ss_dssp HHHHHHTTCHHHHHHGGGCSC--------HHHHHHHHHHHHHHHTTSCTTH--------HHHHHHHHHHHC--
T ss_pred HHHHHHCCCHHHHHHHHcCCC--------HHHHHHHHHHHHHHHcCChHhh--------hccccHHHHHHHHh
Confidence 1 111 12334444333333 3999999999999999999887 433333 5666663
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.57 E-value=8.6e-14 Score=180.43 Aligned_cols=388 Identities=14% Similarity=0.119 Sum_probs=269.1
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHH
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVIL 81 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il 81 (1827)
++..++|..+..+|+.+.+.-+.+. ....+...++|.|++.+.++.++.+|..|+.+|+.++......... .....+
T Consensus 98 s~~~~~~~~A~~~L~~ll~~~~~~~--~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i 175 (530)
T 1wa5_B 98 SDDMQEQLSATVKFRQILSREHRPP--IDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAV 175 (530)
T ss_dssp CSSHHHHHHHHHHHHHHTCCSSSCS--HHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCH
Confidence 4456688888888888876542221 2223345688999999976558999999999999998643211100 112457
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHhhch---hHH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHh-chhhHHh
Q psy14676 82 TALLPQLSSPRQAVRKRTIVALSHLVMSCNL---QLY-TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQA-GHRFAEH 156 (1827)
Q Consensus 82 ~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~---~~~-~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~-~~~~~p~ 156 (1827)
+.++..|.++++.||..|+.+|++++...+. ..+ ...++.++..|.. .+..+++.++.+|+.+++.. +..-..+
T Consensus 176 ~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 254 (530)
T 1wa5_B 176 PLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCRGKKPQPDWSV 254 (530)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHHCCSSSCCCHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCCCCcHHH
Confidence 7888888889999999999999999975322 111 2356777777765 56889999999999999765 4333446
Q ss_pred HHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchH-HHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCC
Q psy14676 157 IERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQ-SITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDT 235 (1827)
Q Consensus 157 l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~-~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~ 235 (1827)
...++|.++..+.++++++|..|+.++..+....++.....+. .+++.++..+..
T Consensus 255 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~------------------------ 310 (530)
T 1wa5_B 255 VSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH------------------------ 310 (530)
T ss_dssp HGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC------------------------
T ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC------------------------
Confidence 6789999999999889999999999888887644332222222 456777766521
Q ss_pred cccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhH-HhhhHHHHhhcCCCCHhHHHHHHHHHHHHHh
Q psy14676 236 EEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMY-RLVSPPLIARFKEREENVKSDIFHAYMALLK 314 (1827)
Q Consensus 236 ~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~-~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~ 314 (1827)
.+|.+|..|+.+|+.++...+.....++ ..++|.|+..+++.++.+|..|+.+++.+..
T Consensus 311 --------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 311 --------------------ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370 (530)
T ss_dssp --------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred --------------------CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 1378999999999998865443322233 3688999999999999999999999998873
Q ss_pred hhcccCCCCCCCCCCCCCCCChHhhHHhhh-HHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcc--cccCch--hhHH
Q psy14676 315 GTRTFSPLTPSDPNQMDQEDSPLCLLSTQV-PSLVKALQCQLREKSIRTRQDCLALLRELVQTLPG--CLAPSL--PALI 389 (1827)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-p~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~--~l~~~l--~~Ll 389 (1827)
.. .......+ ..++|.+++.|+++++++|..+...++.++..... ...+++ ..++
T Consensus 371 ~~--------------------~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l 430 (530)
T 1wa5_B 371 GN--------------------TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCI 430 (530)
T ss_dssp SC--------------------HHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCH
T ss_pred CC--------------------HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCH
Confidence 11 11111111 24567777778889999999888899988876432 111111 2377
Q ss_pred HHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhh-------hhhh
Q psy14676 390 PDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDL-------IGDM 462 (1827)
Q Consensus 390 p~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~-------f~~~ 462 (1827)
|.+..++.+ ..+.+|..++.+|..++...... ..+|
T Consensus 431 ~~L~~ll~~-------------------------------------~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~ 473 (530)
T 1wa5_B 431 KPLCDLLEI-------------------------------------ADNRIIEVTLDALENILKMGEADKEARGLNINEN 473 (530)
T ss_dssp HHHHHHTTT-------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHhC-------------------------------------CCHHHHHHHHHHHHHHHHhhhhhhhcccccccHH
Confidence 788888731 24679999999999999765421 1233
Q ss_pred HHh-----hhhhHHHhhcchhhhhHHHHHHHHHHHHh
Q psy14676 463 YRL-----VSPPLIARFKEREENVKSDIFHAYMALLK 494 (1827)
Q Consensus 463 ~~~-----l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~ 494 (1827)
... .++.+.....+..+.|+..|...+..+..
T Consensus 474 ~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 474 ADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG 510 (530)
T ss_dssp HHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 322 25666776777788999999988777653
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-12 Score=176.52 Aligned_cols=456 Identities=12% Similarity=0.098 Sum_probs=302.4
Q ss_pred HHHHHhhhhccccchhhHHHHHHhhhcccC--------CCCchHHHHHHhccC-ChhhHHHHHHHHHHHHHhcccccccc
Q psy14676 1002 WAQLFLHCECQEEGTRNVVAECLGKLTLID--------PSNLLPRLQESLKSN-SALMRTTHQSNQTFNVIIQRNDIHNH 1072 (1827)
Q Consensus 1002 l~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~--------~~~llP~L~~~L~s~-~~~~R~~a~~~L~~l~~~~~~~l~~~ 1072 (1827)
++.|...+.+++..+|..|+.+|+.++... ...++|.|.+.|++. +...|..++.+|..+...... +..
T Consensus 152 ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~--~~~ 229 (780)
T 2z6g_A 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG--LLA 229 (780)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH--HHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh--HHH
Confidence 334444445677889999999999887542 235789999999754 788999999999976543211 000
Q ss_pred ccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhH--HHHHHHHHHHHhhcCCCHH
Q psy14676 1073 NEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFT--SDIYQCTLVRLKAADIDQE 1150 (1827)
Q Consensus 1073 ~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l--~~l~~~ll~~L~~~D~d~e 1150 (1827)
+. -...+|.++..+++..+.++..|+.++..+...- ...+..+ ...++.++..+. +.+.+
T Consensus 230 ------i~--~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~--------~~~~~~v~~~g~v~~Lv~lL~--~~~~~ 291 (780)
T 2z6g_A 230 ------IF--KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ--------EGAKMAVRLAGGLQKMVALLN--KTNVK 291 (780)
T ss_dssp ------HH--HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS--------TTHHHHHHHTTHHHHHHHGGG--CCCHH
T ss_pred ------HH--HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC--------hhhHHHHHHcCCHHHHHHHHh--cCCHH
Confidence 00 1257899999999999999999999999998641 1222222 246667777776 56789
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh-hhhhhHHHHHHhhhhhh---hHHHHHHHHHHHhcCCCccccchhh-hhhHhhhhhhh
Q psy14676 1151 VKERAISCMGQIICNLGDYLKS-ELPVCLPILLDRLRNEI---TRLTTVKALTKIAASPLRIDLRPIL-TDGIPILGSFL 1225 (1827)
Q Consensus 1151 Vre~Ai~alg~l~~~~g~~l~~-~l~~lL~~Ll~~L~~e~---tR~~av~al~~ia~~~~~~dl~p~~-~~~l~~L~~~L 1225 (1827)
+++.|+.++..+.....+.-.. .-...++.|++.+++.. .+..++.++..++.... .....+ ..+++.|..++
T Consensus 292 v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~--~~~~i~~~g~l~~Ll~lL 369 (780)
T 2z6g_A 292 FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS--NKPAIVEAGGMQALGLHL 369 (780)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTT--HHHHHHHTTHHHHHGGGT
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH--HHHHHHHhchHHHHHHHH
Confidence 9999999999766321111000 11245777777776543 35677888888875421 111122 34678899999
Q ss_pred cchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhc
Q psy14676 1226 RKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQI 1305 (1827)
Q Consensus 1226 rk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgei 1305 (1827)
++.+..++..++.+|..++....... ....+++.|..++.+.|..++..++.+|+.++...+.. ... +
T Consensus 370 ~~~~~~~~~~a~~~L~~L~~~~~~~~---~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~------~~~---i 437 (780)
T 2z6g_A 370 TDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN------KMM---V 437 (780)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH------HHH---H
T ss_pred cCCchHHHHHHHHHHHHHhccchhhh---hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH------HHH---H
Confidence 88888899999999999987654321 23568888889999999999999999999887632210 000 0
Q ss_pred ccccCCCchhhHHHHHHHhcCC--CCHhHHHHHHHHHhhhhhhhh-----------hhhHHHHHHhhhcCc--hhhHHHH
Q psy14676 1306 GRHTDLTSVADLKQVILNAFTP--TSEEVKSAASYTLGSIAVGNL-----------QQYVPFVLKEIENQP--KRQYLLL 1370 (1827)
Q Consensus 1306 G~~~~~~~~~~l~~~~l~~~~~--~s~eVr~aAa~aLG~i~~~~l-----------~~~LP~Il~~i~~~~--~~q~~~l 1370 (1827)
+ ....++.+++.+.+ ..++||..|+.+||+++..+. ...+|.+++.+.... ..+....
T Consensus 438 ---~----~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~ 510 (780)
T 2z6g_A 438 ---C----QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 510 (780)
T ss_dssp ---H----TTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHH
T ss_pred ---H----HCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHH
Confidence 0 01245556666654 235899999999999865321 235788888886532 4566677
Q ss_pred HHHHHHHhhccccccchhhhh--chHHHHHHHHhhh----------------h--cCCchhHHHHHHHHHHHhhc-----
Q psy14676 1371 HSLKEIISWQSTSTSGVAQLQ--QFVPAIWAQLFLH----------------C--ECQEEGTRNVVAECLGKLTL----- 1425 (1827)
Q Consensus 1371 ~aL~Eii~~~~~s~~g~~~L~--~~~~~i~~~L~~~----------------~--~~~~e~vR~~aAecLGkL~~----- 1425 (1827)
++|+.+...... ...+. ..++.|...|-.. + ....+.++..++.||+.|+.
T Consensus 511 ~aL~nLa~~~~~----~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~ 586 (780)
T 2z6g_A 511 GLIRNLALCPAN----HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNR 586 (780)
T ss_dssp HHHHHHHSSHHH----HHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHhcCHHH----HHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhH
Confidence 888877531100 01111 1233333333220 0 01235688899999999984
Q ss_pred --cCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHh
Q psy14676 1426 --IDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRL 1503 (1827)
Q Consensus 1426 --~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~ 1503 (1827)
+.....+|.|.+++.++++.+|..++.+|..+..+ +..+ ..+ .....++.|..+
T Consensus 587 ~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~------~~~~--------~~i----------~~~g~i~~L~~L 642 (780)
T 2z6g_A 587 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD------KEAA--------EAI----------EAEGATAPLTEL 642 (780)
T ss_dssp HHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS------HHHH--------HHH----------HHTTCHHHHHHG
T ss_pred HHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC------HHHH--------HHH----------HHCCCHHHHHHH
Confidence 22356889999999999999999999999988643 2221 000 011256889999
Q ss_pred hcCCchHHHHHHHHHhhhhhhhh
Q psy14676 1504 LEDKNGEVQNLAVKCLGPLVNKV 1526 (1827)
Q Consensus 1504 l~D~~~~Vr~~a~~~Lg~L~~~l 1526 (1827)
++++++.||.+|+.+|..+...-
T Consensus 643 l~~~~~~Vr~~A~~aL~~l~~~~ 665 (780)
T 2z6g_A 643 LHSRNEGVATYAAAVLFRMSEDK 665 (780)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTS
T ss_pred HcCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999998643
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-12 Score=169.47 Aligned_cols=389 Identities=12% Similarity=0.114 Sum_probs=269.4
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHH
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVIL 81 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il 81 (1827)
++..++|..+..+|+.+.+.-+.+. ....+...++|.|++.+.++.++.+|..|+.+|+.++..-...... .....+
T Consensus 85 s~~~~~~~~A~~~L~~l~s~~~~~~--~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i 162 (528)
T 4b8j_A 85 SDDNNLQLEATTQFRKLLSIERSPP--IEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAV 162 (528)
T ss_dssp SSCHHHHHHHHHHHHHHHTCSSSCC--HHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCch--HHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcH
Confidence 4566788888889988877654221 2233456689999999987645999999999999998742221111 112478
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHhhch---hHHH-HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhH
Q psy14676 82 TALLPQLSSPRQAVRKRTIVALSHLVMSCNL---QLYT-KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHI 157 (1827)
Q Consensus 82 ~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~---~~~~-~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l 157 (1827)
+.++..|.++++.||..|+.+|++++...+. .... ..++.++..|.++.+..+++.++.+|+.+++..+..-....
T Consensus 163 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 242 (528)
T 4b8j_A 163 PIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 242 (528)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence 8899999999999999999999999875432 1111 25678888886667789999999999999987654444567
Q ss_pred HHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccch-HHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCc
Q psy14676 158 ERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHI-QSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTE 236 (1827)
Q Consensus 158 ~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l-~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~ 236 (1827)
..++|.+.+.+..++++++..|+.++..+....+......+ ..+++.+++.+..
T Consensus 243 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~------------------------- 297 (528)
T 4b8j_A 243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH------------------------- 297 (528)
T ss_dssp TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC-------------------------
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC-------------------------
Confidence 88999999999989999999888888776643222111111 2356677766532
Q ss_pred ccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhH-HhhhHHHHhhcCCC-CHhHHHHHHHHHHHHHh
Q psy14676 237 EEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMY-RLVSPPLIARFKER-EENVKSDIFHAYMALLK 314 (1827)
Q Consensus 237 ~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~-~~v~p~L~~~l~e~-ee~VR~aa~~al~~ll~ 314 (1827)
.+|.||..|+.+|+.++...+.....++ ..++|.|+..+++. ++.+|..|+.+++.+..
T Consensus 298 -------------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 298 -------------------PSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp -------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred -------------------CChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 1257999999999999865443332333 35788999999888 99999999999999873
Q ss_pred hhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCch--hhHHHHH
Q psy14676 315 GTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSL--PALIPDV 392 (1827)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l--~~Llp~i 392 (1827)
... .....+. -..++|.+++.|.+.++++|..+...++.++.........++ ..+++.+
T Consensus 359 ~~~-----------------~~~~~~~--~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L 419 (528)
T 4b8j_A 359 GNK-----------------DQIQAVI--NAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPL 419 (528)
T ss_dssp SCH-----------------HHHHHHH--HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHH
T ss_pred CCH-----------------HHHHHHH--HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHH
Confidence 110 0111111 124567778888888999999988899998877422222222 3567778
Q ss_pred HHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhh----------hhhhh
Q psy14676 393 TSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRD----------LIGDM 462 (1827)
Q Consensus 393 ~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~----------~f~~~ 462 (1827)
..++.. ..+.++..++.+|..++..... .+...
T Consensus 420 ~~lL~~-------------------------------------~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~ 462 (528)
T 4b8j_A 420 CDLLIC-------------------------------------PDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQM 462 (528)
T ss_dssp HHGGGC-------------------------------------SCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHH
T ss_pred HHHHcC-------------------------------------CCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHH
Confidence 888731 2467999999999999875542 12222
Q ss_pred HHhh--hhhHHHhhcchhhhhHHHHHHHHHHHH
Q psy14676 463 YRLV--SPPLIARFKEREENVKSDIFHAYMALL 493 (1827)
Q Consensus 463 ~~~l--~~~L~~~~~d~~~~Vr~~a~~~l~~L~ 493 (1827)
+... +..+.....+..+.|+..|...+..+.
T Consensus 463 i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~ 495 (528)
T 4b8j_A 463 IDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 495 (528)
T ss_dssp HHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 2222 455556666667888888887776664
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-12 Score=168.22 Aligned_cols=462 Identities=13% Similarity=0.092 Sum_probs=311.4
Q ss_pred hhhccccchhhHHHHHHhhhcccCCCC---chHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhh
Q psy14676 1008 HCECQEEGTRNVVAECLGKLTLIDPSN---LLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYY 1084 (1827)
Q Consensus 1008 ~l~~~e~~vR~~a~e~Lg~L~~~~~~~---llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~ 1084 (1827)
.+.+++..+|+++.-.+..++...++. +++.+.+-++++++..|..|+.+++.+. ... ..+
T Consensus 57 l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~~-------------~~~ 120 (591)
T 2vgl_B 57 CMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR---VDK-------------ITE 120 (591)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC---SGG-------------GHH
T ss_pred HhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---hHH-------------HHH
Confidence 356777888888777777666654443 5677778889999999999888777442 111 155
Q ss_pred hhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q psy14676 1085 FLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIIC 1164 (1827)
Q Consensus 1085 ~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~ 1164 (1827)
.++|.+.+++.|+++.||..|+.++..+.+. . .+..+. ..+++.+...+. |.++.|+..|+.+++.+..
T Consensus 121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~-~-------p~~~~~-~~~~~~l~~lL~--d~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDI-N-------AQMVED-QGFLDSLRDLIA--DSNPMVVANAVAALSEISE 189 (591)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHS-S-------CCCHHH-HHHHHHHHHTTS--CSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhh-C-------hhhccc-ccHHHHHHHHhC--CCChhHHHHHHHHHHHHHh
Confidence 6889999999999999999999999998862 1 122111 246666666665 8899999999999999876
Q ss_pred Hhhhh-hhhhhhhhHHHHHHhhhhh-hh-HHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHH
Q psy14676 1165 NLGDY-LKSELPVCLPILLDRLRNE-IT-RLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLD 1241 (1827)
Q Consensus 1165 ~~g~~-l~~~l~~lL~~Ll~~L~~e-~t-R~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~ 1241 (1827)
..++. .-+..+..++.|+..+.+. .| +...+++++.++... .+....+++.+...++..+..++..++.++.
T Consensus 190 ~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~-----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~ 264 (591)
T 2vgl_B 190 SHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKD-----DREAQSICERVTPRLSHANSAVVLSAVKVLM 264 (591)
T ss_dssp SCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCS-----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHH
T ss_pred hCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 54322 1122334455565555432 23 777777776655321 2234567788888888888999999999988
Q ss_pred HHHHhC--CCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHH
Q psy14676 1242 TLLVNY--PSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQ 1319 (1827)
Q Consensus 1242 ~L~~~~--~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~ 1319 (1827)
.+.... ....-......+.+.|..++ ++|..++..++..|+.++..+|+.+. .+. .
T Consensus 265 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~------------~~~-----~---- 322 (591)
T 2vgl_B 265 KFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILK------------QEI-----K---- 322 (591)
T ss_dssp HSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTT------------TCT-----T----
T ss_pred HHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHH------------HHH-----H----
Confidence 765422 11111122334555555555 48899999999999999998876432 011 1
Q ss_pred HHHHhcCCCCHhHHHHHHHHHhhhhh-hhhhhhHHHHHHhhhc-CchhhHHHHHHHHHHHhhccccccchhhhhchHHHH
Q psy14676 1320 VILNAFTPTSEEVKSAASYTLGSIAV-GNLQQYVPFVLKEIEN-QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAI 1397 (1827)
Q Consensus 1320 ~~l~~~~~~s~eVr~aAa~aLG~i~~-~~l~~~LP~Il~~i~~-~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i 1397 (1827)
.|+ +..+++..||..|...|+.++. .|+..+++.+.+.+.+ +...+..+.++|+.+..+ ..+...|+
T Consensus 323 ~~~-~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~----------~~~~~~~~ 391 (591)
T 2vgl_B 323 VFF-VKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIK----------VEQSAERC 391 (591)
T ss_dssp TTS-CCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTT----------CHHHHHHH
T ss_pred hhe-eccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh----------ChhHHHHH
Confidence 122 3334458999999999998764 4778888888888766 344555667777776542 22344677
Q ss_pred HHHHhhhhcCCchhHHHHHHHHHHHhhccCCC---cchHHHHHhhhc-CCHHHHHHHHHHHHHHhhhcCCCCChhHHHHH
Q psy14676 1398 WAQLFLHCECQEEGTRNVVAECLGKLTLIDPS---NLLPRLQESLKS-NSALMRTTVLTAVKFTISDQMTSSDKDFRFMA 1473 (1827)
Q Consensus 1398 ~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~---~~lP~L~~~l~~-~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a 1473 (1827)
++.|++.+....+.++.-+..+++.+...+|. ..++.|.+.+.+ .++..|.+++..+....... ..
T Consensus 392 v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~----~~------ 461 (591)
T 2vgl_B 392 VSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERI----DN------ 461 (591)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTC----TT------
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccc----cC------
Confidence 77777777666777888888999999887875 577888888864 56777877776665543221 10
Q ss_pred hhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCC
Q psy14676 1474 TNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDIS 1553 (1827)
Q Consensus 1474 ~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~ 1553 (1827)
...++..++..+.+..+.||..+..++.++..+.+... .+.+..++.....+ .+
T Consensus 462 -------------------~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~-~~~i~~ll~~~~~d------~~ 515 (591)
T 2vgl_B 462 -------------------ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET-QELVQQVLSLATQD------SD 515 (591)
T ss_dssp -------------------HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT-HHHHHHHHHHHHTT------CC
T ss_pred -------------------HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH-HHHHHHHHHHhhhc------CC
Confidence 12455677777778889999999999999997765432 34444444433222 23
Q ss_pred ccchhHHHHHHHhhhhc
Q psy14676 1554 SIGLKTVISVVYCLGDR 1570 (1827)
Q Consensus 1554 ~~~vRr~Al~~l~s~a~ 1570 (1827)
|.+||.-|...+.-...
T Consensus 516 d~evrdRA~~y~~ll~~ 532 (591)
T 2vgl_B 516 NPDLRDRGYIYWRLLST 532 (591)
T ss_dssp CHHHHHHHHHHHTTTTT
T ss_pred ChHHHHHHHHHHHHHCc
Confidence 45999988876655533
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.51 E-value=8.4e-13 Score=171.14 Aligned_cols=397 Identities=14% Similarity=0.129 Sum_probs=275.9
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh----HH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhH
Q psy14676 80 ILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ----LY-TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFA 154 (1827)
Q Consensus 80 il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~----~~-~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~ 154 (1827)
.++.++..|.++++.+|..|+.+|..++..-.+. .. ...++.+++.|..+.++.+|..++.+|+.++...+...
T Consensus 88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~- 166 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT- 166 (530)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH-
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH-
Confidence 4677788889999999999999999987543211 11 23567788888765578899999999999987543322
Q ss_pred HhH--HHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccc--hHHHHHHHHHHhccCCCCCcccccccCCCCCCC
Q psy14676 155 EHI--ERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPH--IQSITELCLTYITYDPNYNYEDEEEGLGGEGGG 230 (1827)
Q Consensus 155 p~l--~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~--l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~ 230 (1827)
.++ ..++|.+++.++++++++|+.|+.+|..++...+. .... -..+++.+++.+..
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~------------------- 226 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD-YRDYVLQCNAMEPILGLFNS------------------- 226 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHHHHHHGGGS-------------------
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCcc-chHHHHHcCcHHHHHHHhcc-------------------
Confidence 222 46788899888888999999999998888754322 1111 12356666665521
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHc-CCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHH
Q psy14676 231 EGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATR-RDLIGDMYRLVSPPLIARFKEREENVKSDIFHAY 309 (1827)
Q Consensus 231 ~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~-~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al 309 (1827)
.++.+|+.|+.+|..++... +..-..+...++|.|+..+++.++.||..++.++
T Consensus 227 -------------------------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L 281 (530)
T 1wa5_B 227 -------------------------NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAI 281 (530)
T ss_dssp -------------------------CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred -------------------------CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 12479999999999999765 3333345678899999999999999999999999
Q ss_pred HHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhh-HHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCch-hh
Q psy14676 310 MALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQV-PSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSL-PA 387 (1827)
Q Consensus 310 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-p~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l-~~ 387 (1827)
+.+.... .......+ ..+++.+++.|+++++.+|..++..++.++..-+......+ ..
T Consensus 282 ~~L~~~~--------------------~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 341 (530)
T 1wa5_B 282 SYLSDGP--------------------QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAG 341 (530)
T ss_dssp HHHHSSC--------------------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHhCCC--------------------HHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcc
Confidence 9888321 01111111 24577888888999999999999888888753322111111 25
Q ss_pred HHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhH-Hhh
Q psy14676 388 LIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMY-RLV 466 (1827)
Q Consensus 388 Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~-~~l 466 (1827)
++|.+...|.+ ..|.+|..|+.+|+.++....+....++ ..+
T Consensus 342 ~l~~L~~lL~~-------------------------------------~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~ 384 (530)
T 1wa5_B 342 VLPALRLLLSS-------------------------------------PKENIKKEACWTISNITAGNTEQIQAVIDANL 384 (530)
T ss_dssp HHHHHHHHTTC-------------------------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred hHHHHHHHHcC-------------------------------------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 77888888732 2588999999999999864444444443 357
Q ss_pred hhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhH
Q psy14676 467 SPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDC 546 (1827)
Q Consensus 467 ~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~ 546 (1827)
+|.|+..+.+.++.+|..|..++..+....+ +. +...+.+. ..++
T Consensus 385 l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~---~~----------------------~~~~~~l~----------~~~~ 429 (530)
T 1wa5_B 385 IPPLVKLLEVAEYKTKKEACWAISNASSGGL---QR----------------------PDIIRYLV----------SQGC 429 (530)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT---TC----------------------THHHHHHH----------HTTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC---Cc----------------------HHHHHHHH----------HCCC
Confidence 8899999988899999999999999986532 00 00011111 1357
Q ss_pred HHHHHHhhcCCCccccccchHHHHHHHhhhccc------cchhhH-----HHHHHHHHHHhhcchhhHHHHHHHhhhhH
Q psy14676 547 LALLRELMTSSDKDFRFMATNDLMSELQKDSIK------LDDDSE-----RKVVKMLLRLLEDKNGEVQNLAVKCLGPL 614 (1827)
Q Consensus 547 l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~------~d~~~~-----~~i~~~l~~~l~D~~~eV~~~A~~~lg~l 614 (1827)
++.+...+.+.++++|..++..|...+....-. ....+. ...++.|..++.+++.+|+..|..+|..+
T Consensus 430 l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~ 508 (530)
T 1wa5_B 430 IKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETY 508 (530)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 888888888889999999888887776542110 001111 22367788889999999999998877654
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-12 Score=167.66 Aligned_cols=400 Identities=16% Similarity=0.155 Sum_probs=278.1
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh----HH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhH
Q psy14676 80 ILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ----LY-TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFA 154 (1827)
Q Consensus 80 il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~----~~-~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~ 154 (1827)
-++.++..|.++++.+|..|+.+|..++..-.+. .. ...++.+++.|..+.++.+|..++.+|+.++...++...
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 4777888899999999999999999997754411 11 235677888887655589999999999999975443322
Q ss_pred HhH-HHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchH--HHHHHHHHHhccCCCCCcccccccCCCCCCCC
Q psy14676 155 EHI-ERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQ--SITELCLTYITYDPNYNYEDEEEGLGGEGGGE 231 (1827)
Q Consensus 155 p~l-~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~--~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~ 231 (1827)
..+ ...+|.+++.+.++++++|+.|..+|..++...+. .+..+- .+++.+++.+..+
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~-~~~~i~~~g~l~~Ll~lL~~~------------------- 214 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK-CRDLVLANGALLPLLAQLNEH------------------- 214 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHH-HHHHHHHTTCHHHHHHTCCTT-------------------
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChh-hHHHHHHCCcHHHHHHHHhcC-------------------
Confidence 222 26889999999988999999999999888764332 111111 2566666655221
Q ss_pred CCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHH
Q psy14676 232 GMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMA 311 (1827)
Q Consensus 232 ~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ 311 (1827)
.+|.+|+.++.+|..++...+..-......++|.|+..+++.+++||..++.+++.
T Consensus 215 ------------------------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~ 270 (528)
T 4b8j_A 215 ------------------------TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSY 270 (528)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred ------------------------CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 13589999999999999775543344567889999999999999999999999998
Q ss_pred HHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCch-hhHHH
Q psy14676 312 LLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSL-PALIP 390 (1827)
Q Consensus 312 ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l-~~Llp 390 (1827)
+..... .....+. -..+++.+++.|+++++.+|..++..++.++..-+......+ ..++|
T Consensus 271 l~~~~~-----------------~~~~~~~--~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~ 331 (528)
T 4b8j_A 271 LSDGTN-----------------DKIQAVI--EAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALP 331 (528)
T ss_dssp HTSSCH-----------------HHHHHHH--HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHH
T ss_pred HHcCCH-----------------HHHHHHH--HcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHH
Confidence 873210 0011111 124677888889999999999999999888763332111111 34678
Q ss_pred HHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhH-Hhhhhh
Q psy14676 391 DVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMY-RLVSPP 469 (1827)
Q Consensus 391 ~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~-~~l~~~ 469 (1827)
.+..+|.+ ..++.+|..|+.+|++++...+......+ ..++|.
T Consensus 332 ~L~~lL~~------------------------------------~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~ 375 (528)
T 4b8j_A 332 CLLSLLTQ------------------------------------NLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGP 375 (528)
T ss_dssp HHHHHHHS------------------------------------CCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHH
T ss_pred HHHHHHcC------------------------------------CCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHH
Confidence 88888842 01467999999999999864443333322 367899
Q ss_pred HHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHH
Q psy14676 470 LIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLAL 549 (1827)
Q Consensus 470 L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~ 549 (1827)
|+..+.+..+.+|..|...+..+..... +.....+ ....+++.
T Consensus 376 L~~lL~~~~~~v~~~a~~aL~nl~~~~~---------------------------~~~~~~l----------~~~~~i~~ 418 (528)
T 4b8j_A 376 LVNLLQTAEFDIKKEAAWAISNATSGGS---------------------------HDQIKYL----------VSEGCIKP 418 (528)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHSC---------------------------HHHHHHH----------HHTTCHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHcCCC---------------------------HHHHHHH----------HHCCCHHH
Confidence 9999988899999999999888875421 0001111 11357888
Q ss_pred HHHhhcCCCccccccchHHHHHHHhhhcc-------ccch----hhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHH
Q psy14676 550 LRELMTSSDKDFRFMATNDLMSELQKDSI-------KLDD----DSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLF 615 (1827)
Q Consensus 550 l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~-------~~d~----~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~ 615 (1827)
+...+.+.+++++..++..|...++.+.- .... -.....++.+..++...+.+|+..|...+..+.
T Consensus 419 L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~ 495 (528)
T 4b8j_A 419 LCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 495 (528)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 88888889999999888888777654211 0000 011223566788888999999999998876553
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-10 Score=160.09 Aligned_cols=404 Identities=13% Similarity=0.076 Sum_probs=250.1
Q ss_pred HHHHHHHHHHHHHHhhCCC---CC--hh----hh---hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCC
Q psy14676 7 QLRDISSIGLKTVISELPL---GS--NA----LA---ANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLP 74 (1827)
Q Consensus 7 ~~Rdi~~~~Lktvi~~lp~---~~--~~----~~---~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~ 74 (1827)
......-.-|+++..|+-. .. +. +. ..-.+.+++.+.+.+++..++++...++.+++..+.-.....
T Consensus 152 ~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~- 230 (1023)
T 4hat_C 152 NVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRY- 230 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHH-
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHH-
Confidence 3455555667777777422 10 00 00 011233444455555555577888889999988776322110
Q ss_pred chhHHHHHHHh-hhcCCCCHHHHHHHHHHHHHHHHh-h-ch-----hHHHHHHHHHHHhc-----------------cCC
Q psy14676 75 SFHFVILTALL-PQLSSPRQAVRKRTIVALSHLVMS-C-NL-----QLYTKLIDFLLEGL-----------------TTN 129 (1827)
Q Consensus 75 ~~~~~il~~ll-~~L~~~~~~VRk~Ai~aL~~l~~~-~-~~-----~~~~~l~~~ll~~L-----------------~~~ 129 (1827)
-....+++.++ ..|. ++.+|..|+.||..++.. . ++ +.+..+++..+..+ .+.
T Consensus 231 i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~ 308 (1023)
T 4hat_C 231 IYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANG 308 (1023)
T ss_dssp HHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCT
T ss_pred hcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhcccc
Confidence 01235777777 6664 577999999999999872 2 12 22333333333211 112
Q ss_pred CCHHHHHHHHHHHHHHHHHhchhh------HHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHh------CCCccccc
Q psy14676 130 KSTSTNRTYIQCFAAICRQAGHRF------AEHIERVMPLILKYSREEDDELREFCLQACEAFVQR------CPKEITPH 197 (1827)
Q Consensus 130 ~~~~~r~~ai~~l~~la~~~~~~~------~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~------~p~e~~p~ 197 (1827)
.+.+..+..+..+.++.+.....+ .+.+...+..++.+...++.|+-+.|+..+-.+... +...+.|+
T Consensus 309 ~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~ 388 (1023)
T 4hat_C 309 NDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEI 388 (1023)
T ss_dssp THHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 345566778888888887665443 333444445677766667777655555444333331 12346788
Q ss_pred hHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCC--CccchhhHHHHHHHHHHHHHHHc
Q psy14676 198 IQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSD--DDDMSWKVRRAAAKCLEAIIATR 275 (1827)
Q Consensus 198 l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sd--ddD~sWkVRraAak~L~~l~~~~ 275 (1827)
+..+++.+.+.|.|.+....-++|+ ++-.+++.. |+...||.=| .+|..+..-.
T Consensus 389 ~~~L~~vli~km~~P~e~~ive~d~---------------------~~~~~e~~~d~d~~~~f~~~R---d~L~~l~~l~ 444 (1023)
T 4hat_C 389 CSQLRLVIIENMVRPEEVLVVENDE---------------------GEIVREFVKESDTIQLYKSER---EVLVYLTHLN 444 (1023)
T ss_dssp HHHHHHHHHHSCCCCTTCCEEECTT---------------------SCEEECSSCCGGGHHHHHHHH---HHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCcccccCCCCC---------------------ccHHHHhccchHHHHHHHHHH---HHHHHHhccC
Confidence 9999999999999975442111100 000011111 1123465434 5665555443
Q ss_pred CCchhhhHHhhhHHHHhhcC--CCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHH
Q psy14676 276 RDLIGDMYRLVSPPLIARFK--EREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQC 353 (1827)
Q Consensus 276 ~~~l~~~~~~v~p~L~~~l~--e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~ 353 (1827)
++ +..+.+.+.+.+.+. +.+|..|.+++.|+|++..... .....+.+|.+++.++.
T Consensus 445 ~~---~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~-------------------~~~e~~~l~~vi~~Ll~ 502 (1023)
T 4hat_C 445 VI---DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMS-------------------EDTEKRFVVTVIKDLLD 502 (1023)
T ss_dssp HH---HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSC-------------------HHHHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCC-------------------chhHHHHHHHHHHHHHH
Confidence 32 455666777766665 3789999999999999883211 12357889999999998
Q ss_pred Hhc-----cCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCC
Q psy14676 354 QLR-----EKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDN 428 (1827)
Q Consensus 354 ~L~-----d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~ 428 (1827)
.+. |++++||++++-++++..+.+.. -.++++++++.+...+.
T Consensus 503 l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~-~~~~L~~vl~~L~~~l~------------------------------- 550 (1023)
T 4hat_C 503 LCVKKRGKDNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMH------------------------------- 550 (1023)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHTCHHHHHH-CHHHHHHHHHHHHHHTT-------------------------------
T ss_pred hhhccccCcchHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHhh-------------------------------
Confidence 875 56677888776677777666522 13466777777777662
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHhhhhh--------hhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcc
Q psy14676 429 EYSDDDDMSWKVRRAAAKCLEAIIATRRDLI--------GDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTR 497 (1827)
Q Consensus 429 e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f--------~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g 497 (1827)
+.+.++..+|+.++..+++.++..+ .||++.++..+...+.....+-+..+++.++.+++..+
T Consensus 551 ------~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 551 ------ETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp ------CSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred ------cCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 1246799999999999999988666 47999999888888876666777788888888887654
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.2e-13 Score=155.32 Aligned_cols=181 Identities=16% Similarity=0.210 Sum_probs=159.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhc-CCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCC
Q psy14676 254 DDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARF-KEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQ 332 (1827)
Q Consensus 254 dD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l-~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~ 332 (1827)
++.+|+.|++|+.+|..++..+++.....+..+++.|..++ ++.+.+||.+++.+++.+++..+
T Consensus 25 ~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~--------------- 89 (242)
T 2qk2_A 25 EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA--------------- 89 (242)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG---------------
T ss_pred ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh---------------
Confidence 45789999999999999999877655566789999999999 59999999999999999996532
Q ss_pred CCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCC
Q psy14676 333 EDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEG 412 (1827)
Q Consensus 333 ~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~ 412 (1827)
..+.++++.++|.+++.++|+++.||+++...+..+.... +++.++|.+...++
T Consensus 90 -----~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~------~~~~ll~~l~~~l~--------------- 143 (242)
T 2qk2_A 90 -----KRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST------SLEAQQESIVESLS--------------- 143 (242)
T ss_dssp -----GGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS------CHHHHHHHHHHHTT---------------
T ss_pred -----hhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHc---------------
Confidence 3467899999999999999999999999999999988754 35788999988873
Q ss_pred CCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh--hhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHH
Q psy14676 413 MDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR--DLIGDMYRLVSPPLIARFKEREENVKSDIFHAYM 490 (1827)
Q Consensus 413 ~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~--~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~ 490 (1827)
+.+|++|..++.+++.++.+++ ..+.+|++.++|.+..++.|.+++||..|+.+++
T Consensus 144 ----------------------~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~ 201 (242)
T 2qk2_A 144 ----------------------NKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALG 201 (242)
T ss_dssp ----------------------CSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred ----------------------CCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 2479999999999999988875 3678999999999999999999999999999999
Q ss_pred HHHhhcc
Q psy14676 491 ALLKGTR 497 (1827)
Q Consensus 491 ~L~~~~g 497 (1827)
.+....|
T Consensus 202 ~l~~~vg 208 (242)
T 2qk2_A 202 TLIKLMG 208 (242)
T ss_dssp HHHHHHC
T ss_pred HHHHHcC
Confidence 9998887
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.5e-09 Score=144.27 Aligned_cols=462 Identities=12% Similarity=0.132 Sum_probs=260.3
Q ss_pred CHHHHHHHHHHHHHHHhhccCC-CCchhHHHHHHHhhhcC-----CCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q psy14676 51 DVSVQLEALDILSDLLSRFGAL-LPSFHFVILTALLPQLS-----SPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLE 124 (1827)
Q Consensus 51 ~~~v~~~al~iL~~l~~~~~~~-l~~~~~~il~~ll~~L~-----~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~ 124 (1827)
++.+|--|+.+|...+..+++. ..+....+.+.+++.+. +..+.||.+...++..++...-+..|..+++.+++
T Consensus 56 ~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~ 135 (980)
T 3ibv_A 56 KPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQG 135 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHH
Confidence 6899999999998888843332 00023345555555543 23468999999999999998766777778888887
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHHhch------------------hhHHh-HHHHHHHHHhhcc----cCchHHHHHHHH
Q psy14676 125 GLTTNKSTSTNRTYIQCFAAICRQAGH------------------RFAEH-IERVMPLILKYSR----EEDDELREFCLQ 181 (1827)
Q Consensus 125 ~L~~~~~~~~r~~ai~~l~~la~~~~~------------------~~~p~-l~~i~p~l~~~~~----~~~delRe~al~ 181 (1827)
.+..+.........+..+..+.+-..+ .+... ++.+++.+++.+. ..+++++..++.
T Consensus 136 ~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~ 215 (980)
T 3ibv_A 136 VIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQ 215 (980)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 775422213344556666655554321 11111 3444555555543 367889999999
Q ss_pred HHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHH
Q psy14676 182 ACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVR 261 (1827)
Q Consensus 182 ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVR 261 (1827)
++.+|+.-.|-..-- -+.+++.+++++.. -.+|
T Consensus 216 ~l~s~i~wi~~~~i~-~~~ll~~l~~~L~~----------------------------------------------~~~r 248 (980)
T 3ibv_A 216 VYAQWVSWININLIV-NEPCMNLLYSFLQI----------------------------------------------EELR 248 (980)
T ss_dssp HHHHHTTTSCHHHHH-CHHHHHHHHHHTTS----------------------------------------------HHHH
T ss_pred HHHHHHhhcCHHhhh-cchHHHHHHHHcCC----------------------------------------------hHHH
Confidence 999999866542111 15678888876621 0589
Q ss_pred HHHHHHHHHHHHHcCC--chhhhHHhh-hHHHHhhcC--CCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCh
Q psy14676 262 RAAAKCLEAIIATRRD--LIGDMYRLV-SPPLIARFK--EREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSP 336 (1827)
Q Consensus 262 raAak~L~~l~~~~~~--~l~~~~~~v-~p~L~~~l~--e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~ 336 (1827)
.+|++||..++....+ ...+++..+ +...+..+. +.+.+++.....-+.++....... ... +. ..+...
T Consensus 249 ~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~---~~--~~~~~~ 322 (980)
T 3ibv_A 249 CAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-KSD---PS--ELSPEL 322 (980)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHH-HTS---CC----CHHH
T ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-ccC---cc--ccchhh
Confidence 9999999999876443 111111111 111122222 456666554443333332221111 000 00 000011
Q ss_pred HhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCc---------ccccCchhhHHHHHHHHhhhhhcccCCCC
Q psy14676 337 LCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLP---------GCLAPSLPALIPDVTSVAEWDEEEGLGGE 407 (1827)
Q Consensus 337 ~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~---------~~l~~~l~~Llp~i~~~L~~~~~~~~~~~ 407 (1827)
.....+.+..+++.+++.+.+++.+|-..++.++..+..... ..+.++++.|++.+.+-+. |
T Consensus 323 ~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~----y----- 393 (980)
T 3ibv_A 323 KENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMK----Y----- 393 (980)
T ss_dssp HHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTS----C-----
T ss_pred hhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHcc----C-----
Confidence 234556788899999999999999999988888887775432 1223455555555444332 1
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCCCCcccH-HHHHHHHHHHHHHHHHhh-hhhhhhHH-hhhhhHHHhh---cchhhhh
Q psy14676 408 GGGEGMDTEEEDGEDEGEDDNEYSDDDDMSW-KVRRAAAKCLEAIIATRR-DLIGDMYR-LVSPPLIARF---KEREENV 481 (1827)
Q Consensus 408 ~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w-~vr~~a~~~l~~l~~~~~-~~f~~~~~-~l~~~L~~~~---~d~~~~V 481 (1827)
+++++.+ +|+|.+| +..+ ..|.... .+...+...+ +.+.+++. .+.+.+.+.+ ....|+.
T Consensus 394 --------p~d~~~~---~~~d~ed--~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~ 459 (980)
T 3ibv_A 394 --------DESQEWD---DDPDSEE--EAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQL 459 (980)
T ss_dssp --------CTTCCCC---CCSSSST--HHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred --------CCccccc---cccchhH--HHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHH
Confidence 0100000 0000011 1122 2444444 4444444444 44444222 3444444444 3456888
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccc
Q psy14676 482 KSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDF 561 (1827)
Q Consensus 482 r~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~ 561 (1827)
+++++-.+..+.+........ . .+.
T Consensus 460 ~EaaL~~l~~iaE~i~~~~~~-------~-~~~----------------------------------------------- 484 (980)
T 3ibv_A 460 IEFALYETYIFGEGLRGPDAF-------F-NEV----------------------------------------------- 484 (980)
T ss_dssp HHHHHHHHHHTTTTCCSGGGT-------B-CSS-----------------------------------------------
T ss_pred HHHHHHHHHHHHhhccccccc-------c-Ccc-----------------------------------------------
Confidence 888888877776643310000 0 000
Q ss_pred cccchHHHHHHHhhhccccchhhHHHHHHHHHHHhh-----cchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccc
Q psy14676 562 RFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLE-----DKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTD 636 (1827)
Q Consensus 562 Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~-----D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~ 636 (1827)
....+++++.+..+++ ++.+.||..+..++|+..+-+.. . ..|++.
T Consensus 485 --------------------~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~---~------~~~l~~ 535 (980)
T 3ibv_A 485 --------------------DKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY---E------SAAIPA 535 (980)
T ss_dssp --------------------SCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT---C------CTTHHH
T ss_pred --------------------cchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc---C------chhHHH
Confidence 0012234455555544 78899999999999988766553 1 268888
Q ss_pred hhhhhhh--hhhhhhhhhhhhhHHHHHHHHhhCCCccc
Q psy14676 637 GIPILGS--FLRKNQRALKLSTLLLLDTLLVNYPSAIS 672 (1827)
Q Consensus 637 ~i~~l~~--~l~~~~~~lk~~~l~~l~~l~~~~~~~~~ 672 (1827)
+++.+.. ++++++..++..+..++..+++.....+.
T Consensus 536 ~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~ 573 (980)
T 3ibv_A 536 LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVV 573 (980)
T ss_dssp HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCS
T ss_pred HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhh
Confidence 8999998 88888888888888888888765554433
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.7e-12 Score=166.57 Aligned_cols=368 Identities=13% Similarity=0.097 Sum_probs=249.5
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhh
Q psy14676 1223 SFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASIL 1302 (1827)
Q Consensus 1223 ~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~l 1302 (1827)
.++..++-..|...+-++..++.. .++....+++.+..-+.+.+..++..|+.+|+.+.. +
T Consensus 77 k~~~s~~~~~Krl~Yl~~~~~~~~-----~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~------------ 137 (618)
T 1w63_A 77 KLIASQKFTDKRIGYLGAMLLLDE-----RQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS--S------------ 137 (618)
T ss_dssp HHHHSSSHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--H------------
T ss_pred HHHcCCchHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--H------------
Confidence 344456667788777777766543 355556678888888889999999999988887542 0
Q ss_pred hhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhh---hhhhHHHHHHhhhc-CchhhHHHHHHHHHHHh
Q psy14676 1303 PQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGN---LQQYVPFVLKEIEN-QPKRQYLLLHSLKEIIS 1378 (1827)
Q Consensus 1303 geiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~---l~~~LP~Il~~i~~-~~~~q~~~l~aL~Eii~ 1378 (1827)
+ ..+.+.+.+.+++.+.++.||.+|+.+++.+...+ +..++|.+.+.+.+ ++..++..+++|.++..
T Consensus 138 -~--------~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~ 208 (618)
T 1w63_A 138 -E--------MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCE 208 (618)
T ss_dssp -H--------HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCC
T ss_pred -H--------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHH
Confidence 1 12567889999999999999999999999976543 34677777777766 35678888999999865
Q ss_pred hccccccchhhhhchHHHHHHHHhhhhc-----------CCchhHHHHHHHHHHHhhccCCC---cchHHHHHhhhc---
Q psy14676 1379 WQSTSTSGVAQLQQFVPAIWAQLFLHCE-----------CQEEGTRNVVAECLGKLTLIDPS---NLLPRLQESLKS--- 1441 (1827)
Q Consensus 1379 ~~~~s~~g~~~L~~~~~~i~~~L~~~~~-----------~~~e~vR~~aAecLGkL~~~~p~---~~lP~L~~~l~~--- 1441 (1827)
.-.. ....+.++++.++..|.+.+. ..++..+..+.++||+++..+|+ .+.+.|...++.
T Consensus 209 ~~~~---~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~ 285 (618)
T 1w63_A 209 RSPD---MLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTET 285 (618)
T ss_dssp SHHH---HHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCC
T ss_pred hChH---HHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccc
Confidence 2100 012345667777776665322 23677788888999999877653 333344433321
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhh
Q psy14676 1442 NSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGP 1521 (1827)
Q Consensus 1442 ~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~ 1521 (1827)
.....+..+..|++.++.-.+ ++.++ ...++.+..++.++++
T Consensus 286 ~~~~~~aV~~ea~~~i~~l~~---~~~l~-----------------------~~a~~~L~~~L~~~d~------------ 327 (618)
T 1w63_A 286 SKNVGNAILYETVLTIMDIKS---ESGLR-----------------------VLAINILGRFLLNNDK------------ 327 (618)
T ss_dssp SSTHHHHHHHHHHHHHHHSCC---CHHHH-----------------------HHHHHHHHHHHTCSST------------
T ss_pred ccchHHHHHHHHHHHHHhcCC---CHHHH-----------------------HHHHHHHHHHHhCCCC------------
Confidence 112233333444443332110 11110 0111222222322332
Q ss_pred hhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhhhhccCCCCcccchhhhhhhhcccCCccccccccc
Q psy14676 1522 LVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRNSSSNMKIDTLAFTHTLLTTHPPAVFHPHIH 1601 (1827)
Q Consensus 1522 L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~~~p~li~~~~~~~~~~~l~~llp~l~~~~~~ 1601 (1827)
++|++|+.+|+..++++|+.+ .++...+++.++
T Consensus 328 ----------------------------------~vr~~aL~~L~~i~~~~p~~~--------~~~~~~i~~~l~----- 360 (618)
T 1w63_A 328 ----------------------------------NIRYVALTSLLKTVQTDHNAV--------QRHRSTIVDCLK----- 360 (618)
T ss_dssp ----------------------------------TTHHHHHHHHHHHHHHHHHHH--------GGGHHHHHHGGG-----
T ss_pred ----------------------------------chHHHHHHHHHHHHhhCHHHH--------HHHHHHHHHHcc-----
Confidence 899999999999999889888 777777777666
Q ss_pred ccCCcchhccccceeeeccCcccccccCchhhhhHHHHHHHHHhhh-hccCChHHHHHHHHhhccchhhHHHHHHHHHHH
Q psy14676 1602 ILLPPVIIIKTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTC-LDRVDMFEFLNHLESGLRDHYDIKMLTYLMLAR 1680 (1827)
Q Consensus 1602 ~~~~~t~~~~~lir~v~mgpfkh~vddgl~~Rk~a~e~~~~ll~~~-~~~~~~~~~~~~~~~gl~d~~dik~l~~~~l~~ 1680 (1827)
|+...+|+.|+|+||.+.+.. .+.+ +.+++.++.. ++.++|..+...+.+
T Consensus 361 -------------------------d~d~~Ir~~alelL~~l~~~~nv~~i-v~eL~~~l~~---~d~e~r~~~v~~I~~ 411 (618)
T 1w63_A 361 -------------------------DLDVSIKRRAMELSFALVNGNNIRGM-MKELLYFLDS---CEPEFKADCASGIFL 411 (618)
T ss_dssp -------------------------SSCHHHHHHHHHHHHHHCCSSSTHHH-HHHHHHHHHH---CCHHHHHHHHHHHHH
T ss_pred -------------------------CCChhHHHHHHHHHHHHcccccHHHH-HHHHHHHHHh---CCHHHHHHHHHHHHH
Confidence 678899999999999998753 2222 3444444432 377999999999999
Q ss_pred HHhhChHHHHHHHHHhhHHHHhhhcccccc---chhhHHHHHHHHHHHHHHHHHHHHhc
Q psy14676 1681 LAQMTPAALLQRLERIVEPLRNTVTLKVKA---NSVKQEYEKQDELKRSAMRAVAALLT 1736 (1827)
Q Consensus 1681 l~~~~p~~~~~~l~~l~~~~~~~l~~~~k~---~~~kqe~e~~~e~~~s~~r~~~~l~~ 1736 (1827)
+|...|......++.+.+.++..-. .++. ..+++-+++..++++++++.++.+..
T Consensus 412 la~k~~~~~~~~v~~ll~lL~~~~~-~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~ 469 (618)
T 1w63_A 412 AAEKYAPSKRWHIDTIMRVLTTAGS-YVRDDAVPNLIQLITNSVEMHAYTVQRLYKAIL 469 (618)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTGG-GSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHH
T ss_pred HHHHhCccHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHh
Confidence 9999888888889999998887753 4565 67889999999999999998887754
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.8e-11 Score=158.37 Aligned_cols=484 Identities=12% Similarity=0.049 Sum_probs=300.9
Q ss_pred CCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcC-CchhhHHHHHHHHHH
Q psy14676 1033 SNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGD-NFYKITAEALLVLQQ 1111 (1827)
Q Consensus 1033 ~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D-~~~~V~~eAl~~l~~ 1111 (1827)
...+|.|.+.++++++..|..++..|+.++........ .......++.++..+.+ +++.++..|+.++..
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~---------i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~ 83 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA---------IMRSPQMVSAIVRTMQNTNDVETARCTAGTLHN 83 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHH---------HTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHH---------HHhccChHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 45789999999998999999999999987765432100 00023567888888875 478999999888887
Q ss_pred HHHHhccCCCCCCCCcchhH--HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhHHHHHHhhhhh
Q psy14676 1112 FVKVIRPLTSPSSYDFAPFT--SDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSE-LPVCLPILLDRLRNE 1188 (1827)
Q Consensus 1112 lv~~l~~~~~~~~~~~~~~l--~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~-l~~lL~~Ll~~L~~e 1188 (1827)
+...- +.+..+ ...++.++..+. +.+.++|..|+.+++.+........... -...+|.|++.++++
T Consensus 84 Ls~~~---------~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~ 152 (644)
T 2z6h_A 84 LSHHR---------EGLLAIFKSGGIPALVKMLG--SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 152 (644)
T ss_dssp HTTSH---------HHHHHHHTTTHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC
T ss_pred HhcCh---------hhHHHHHHcCCHHHHHHHHh--CCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC
Confidence 65320 111111 124566666666 5678999999999999987643322222 246889999999876
Q ss_pred hh--HHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchh-HHHHHHHHHHHHHHHHhCCCCcChHhH-HHHHHHhh
Q psy14676 1189 IT--RLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQ-RALKLSTLLLLDTLLVNYPSAISTEML-NKVTVELA 1264 (1827)
Q Consensus 1189 ~t--R~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~-r~lR~~al~aL~~L~~~~~~~l~~~~~-~~ll~~L~ 1264 (1827)
.. +..++.++..++.........-.-...++.|..++++.+ ..++..++.+|..+..+.. .....+ ...++.|.
T Consensus 153 ~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~--~~~~l~~~g~l~~L~ 230 (644)
T 2z6h_A 153 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS--NKPAIVEAGGMQALG 230 (644)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTT--HHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcc--cHHHHHHCCCHHHHH
Confidence 55 566677888888531100000012356788888888654 5677788888888764321 111112 24678888
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhh
Q psy14676 1265 PLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIA 1344 (1827)
Q Consensus 1265 ~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~ 1344 (1827)
.++.+.+..++..++.+|..++...+.. .....+++.+++.+.++++++|..|+.+|++++
T Consensus 231 ~ll~~~~~~~~~~a~~~L~nL~~~~~~~-------------------~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~ 291 (644)
T 2z6h_A 231 LHLTDPSQRLVQNCLWTLRNLSDAATKQ-------------------EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 291 (644)
T ss_dssp TTTTCSCHHHHHHHHHHHHHHGGGCTTC-------------------CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhcchhh-------------------hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988654321 112468899999999999999999999999987
Q ss_pred hhhh--------hhhHHHHHHhhhcC---chhhHHHHHHHHHHHhhccccccchhhhhc--hHHHHHHHHhhhhcCCc-h
Q psy14676 1345 VGNL--------QQYVPFVLKEIENQ---PKRQYLLLHSLKEIISWQSTSTSGVAQLQQ--FVPAIWAQLFLHCECQE-E 1410 (1827)
Q Consensus 1345 ~~~l--------~~~LP~Il~~i~~~---~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~--~~~~i~~~L~~~~~~~~-e 1410 (1827)
.++- ...+|.+++.+... +..+...+++|+-+...... ....+. .....++.|.+.+.+.. +
T Consensus 292 ~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~----~~~~q~~v~~~~~l~~L~~lL~~~~~~ 367 (644)
T 2z6h_A 292 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE----AEMAQNAVRLHYGLPVVVKLLHPPSHW 367 (644)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTT----HHHHHHHHHHTTHHHHHHHTTSTTCCH
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCch----HHHHHHHHHHccChHHHHHHhCccCch
Confidence 6431 12567777777652 35667778888877531100 001111 11234566777665543 5
Q ss_pred hHHHHHHHHHHHhhccC-------CCcchHHHHHhhhcCCHHHHHHHHHHHHH--HhhhcCCCCChhHHHHHhhhhhhhh
Q psy14676 1411 GTRNVVAECLGKLTLID-------PSNLLPRLQESLKSNSALMRTTVLTAVKF--TISDQMTSSDKDFRFMATNDLMSEL 1481 (1827)
Q Consensus 1411 ~vR~~aAecLGkL~~~~-------p~~~lP~L~~~l~~~~~~~R~t~l~Alk~--~~~~~~~~~d~~l~~~a~~~l~~~l 1481 (1827)
.+|..++.+|+.|+... -...+|.|.+.+.+.++.+|..+..++.. ... ..-++.++..+...|....
T Consensus 368 ~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~---~~~~~~v~~~a~~aL~~La 444 (644)
T 2z6h_A 368 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE---GVRMEEIVEGCTGALHILA 444 (644)
T ss_dssp HHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CC---SSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcc---cccHHHHHHHHHHHHHHHh
Confidence 79999999999998632 23678999999887665554433333222 100 0001111111111111000
Q ss_pred hhcccccChh-HHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHH-----HHHHHHhhhcccccccccCCcc
Q psy14676 1482 QKDSIKLDDD-SERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVET-----IVDALCSNMVSDKEQLRDISSI 1555 (1827)
Q Consensus 1482 ~~~~~~~~~~-~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~-----~v~~l~~~l~~~~~~~~~~~~~ 1555 (1827)
..+. .... .....++.|+.++.+++++|+..|+.+|+.++.. .+.... .+..+...+.+. |.
T Consensus 445 ~~~~--~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~i~~~g~l~~L~~ll~~~--------~~ 512 (644)
T 2z6h_A 445 RDVH--NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSR--------NE 512 (644)
T ss_dssp TSHH--HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHHTTCS--------CH
T ss_pred cCHH--HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HHHHHHHHHcCChhHHHHHHcCC--------CH
Confidence 0000 0000 1134679999999999999999999999998853 111111 123333333333 33
Q ss_pred chhHHHHHHHhhhhccCCCCc
Q psy14676 1556 GLKTVISVVYCLGDRNSSSNM 1576 (1827)
Q Consensus 1556 ~vRr~Al~~l~s~a~~~p~li 1576 (1827)
+||..|..+|...+.+++...
T Consensus 513 ~vr~~A~~aL~~l~~~~~~~~ 533 (644)
T 2z6h_A 513 GVATYAAAVLFRMSEDKPQDY 533 (644)
T ss_dssp HHHHHHHHHHHHHTTTSCHHH
T ss_pred HHHHHHHHHHHHHhccCcHhh
Confidence 999999999999998876544
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-09 Score=142.58 Aligned_cols=510 Identities=11% Similarity=0.020 Sum_probs=311.3
Q ss_pred ChhhHHHHHHHHHHHHHhcccc-ccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCC
Q psy14676 1047 SALMRTTHQSNQTFNVIIQRND-IHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSY 1125 (1827)
Q Consensus 1047 ~~~~R~~a~~~L~~l~~~~~~~-l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~ 1125 (1827)
...+|..+.-++..++...... -+.. |-..+-..|...+......-...|++++..++.. ..
T Consensus 217 ~~~~r~~~~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g--------~~ 279 (810)
T 3now_A 217 TGSSSTIASVCLARIYENMYYDEAKAR---------FTDQIDEYIKDKLLAPDMESKVRVTVAITALLNG--------PL 279 (810)
T ss_dssp CTTHHHHHHHHHHHHHHTCCSHHHHHH---------HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSS--------SH
T ss_pred ChhHHHHHHHHHHHHHHHhccchhHHH---------HHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcC--------CH
Confidence 4568888888888666654410 0111 1223333444444444444444556666666531 11
Q ss_pred CcchhH---HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhHHHHHHhhhhhh--hHHHHHHHHH
Q psy14676 1126 DFAPFT---SDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSE-LPVCLPILLDRLRNEI--TRLTTVKALT 1199 (1827)
Q Consensus 1126 ~~~~~l---~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~-l~~lL~~Ll~~L~~e~--tR~~av~al~ 1199 (1827)
+....+ ...++.++..+. ..+..+++.|+.+++.+... .....+ .....|.|...+++++ .|..|+-+|.
T Consensus 280 ~~~~~~~~~~G~v~~li~Ll~--s~~~~~q~~A~~al~~aa~~--~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~ 355 (810)
T 3now_A 280 DVGNQVVAREGILQMILAMAT--TDDELQQRVACECLIAASSK--KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLC 355 (810)
T ss_dssp HHHHHHHHTTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHTTS--HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHhC--CCCHHHHHHHHHHHHHHcCC--cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHH
Confidence 111111 134455555555 56889999999999996543 222221 2223478888776554 4888888888
Q ss_pred HHhcCCC---c-cccc-hhhhhhHhhhhhhhcch--hHHHHHHHHHHHHHHHHhCCCCcChHhH--HHHHHHhhhhcCCC
Q psy14676 1200 KIAASPL---R-IDLR-PILTDGIPILGSFLRKN--QRALKLSTLLLLDTLLVNYPSAISTEML--NKVTVELAPLVSES 1270 (1827)
Q Consensus 1200 ~ia~~~~---~-~dl~-p~~~~~l~~L~~~Lrk~--~r~lR~~al~aL~~L~~~~~~~l~~~~~--~~ll~~L~~ll~d~ 1270 (1827)
.++.+.. + ..+. .-+..+++.|..+|... +..+|..++++|..|..... ....+. .+++|.|..+++..
T Consensus 356 kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~--vk~~lv~d~g~Ip~LV~LL~s~ 433 (810)
T 3now_A 356 KLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAE--CKEKLIEDKASIHALMDLARGG 433 (810)
T ss_dssp HHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHH--HHHHHHHCHHHHHHHHHHHHTT
T ss_pred HhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcH--HHHHHHHccchHHHHHHHhCCC
Confidence 8875321 1 1122 11345677788888776 67899999999998855321 111222 36788888899889
Q ss_pred ChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcc-cccCC-------Cc---------hhhHHHHHHHhcCCCCHhHH
Q psy14676 1271 DLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIG-RHTDL-------TS---------VADLKQVILNAFTPTSEEVK 1333 (1827)
Q Consensus 1271 D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG-~~~~~-------~~---------~~~l~~~~l~~~~~~s~eVr 1333 (1827)
|..+...++.+|+.++...+..-..+.+. .+.... .++.- .+ -...+|.|...+.++++++|
T Consensus 434 d~~i~~~al~~L~NLt~~~d~q~~~~~l~-~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vq 512 (810)
T 3now_A 434 NQSCLYGVVTTFVNLCNAYEKQEMLPEMI-ELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQ 512 (810)
T ss_dssp CGGGHHHHHHHHHHHTTCSCCCCCCCSCG-GGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHH
T ss_pred ChHHHHHHHHHHHHHcCCchhhhhhHHHH-HHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHH
Confidence 99999999999999998543211101110 001110 11000 00 02478999999999999999
Q ss_pred HHHHHHHhhhhhh--h---h-h-hhHHHHHHhhhcC-chhhHHHHHHHHHHHhhccccccchhh-hhc-hHHHHHHHHhh
Q psy14676 1334 SAASYTLGSIAVG--N---L-Q-QYVPFVLKEIENQ-PKRQYLLLHSLKEIISWQSTSTSGVAQ-LQQ-FVPAIWAQLFL 1403 (1827)
Q Consensus 1334 ~aAa~aLG~i~~~--~---l-~-~~LP~Il~~i~~~-~~~q~~~l~aL~Eii~~~~~s~~g~~~-L~~-~~~~i~~~L~~ 1403 (1827)
..|+.+|++++.. + + + -.+|.++..+.++ +..|....|+|..+..... +.. +.. ......++|++
T Consensus 513 e~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~-----p~~~~~~~~~~~aIppLv~ 587 (810)
T 3now_A 513 ELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN-----PEVSFSGQRSLDVIRPLLN 587 (810)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC-----HHHHTTTHHHHHTHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC-----hhhhhcchhhhcHHHHHHH
Confidence 9999999998642 1 1 1 2567777777653 3457778899988765211 111 111 12234566666
Q ss_pred hhcCCch-hHHHHHHHHHHHhhccCC--------CcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHh
Q psy14676 1404 HCECQEE-GTRNVVAECLGKLTLIDP--------SNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMAT 1474 (1827)
Q Consensus 1404 ~~~~~~e-~vR~~aAecLGkL~~~~p--------~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~ 1474 (1827)
.+.++.. ..+..++.+|+.|+...+ ...+|.|.+++.++++.+|..++.+|..+.... +...
T Consensus 588 LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~-----~~~~---- 658 (810)
T 3now_A 588 LLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE-----DVIK---- 658 (810)
T ss_dssp TTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH-----HHHH----
T ss_pred HhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh-----HHHH----
Confidence 6654322 234458899999998653 257899999999999999999999999998632 1111
Q ss_pred hhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhh---hhhH--HHHHHHHHhhhccccccc
Q psy14676 1475 NDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVK---EFQV--ETIVDALCSNMVSDKEQL 1549 (1827)
Q Consensus 1475 ~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~---~~~~--~~~v~~l~~~l~~~~~~~ 1549 (1827)
.+.+. ...++.++.++..++..+|..|+.+|+.|+..-+ ...+ ...+.+|+.-+.+++.
T Consensus 659 -----~~v~~---------~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~-- 722 (810)
T 3now_A 659 -----MFEGN---------NDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSP-- 722 (810)
T ss_dssp -----HHHSS---------SSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSH--
T ss_pred -----HHHhc---------cCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCH--
Confidence 01010 1366899999999999999999999999986321 1122 2466677766655444
Q ss_pred ccCCccchhHHHHHHHhhhhccCCCCcccchhhhhhhhcc-cCCcccccccccccCCcchhccccceeeeccCccccccc
Q psy14676 1550 RDISSIGLKTVISVVYCLGDRNSSSNMKIDTLAFTHTLLT-THPPAVFHPHIHILLPPVIIIKTLIREVEMGPFKHTVDD 1628 (1827)
Q Consensus 1550 ~~~~~~~vRr~Al~~l~s~a~~~p~li~~~~~~~~~~~l~-~llp~l~~~~~~~~~~~t~~~~~lir~v~mgpfkh~vdd 1628 (1827)
++|+.|..++.-+....++.. ..+.. ..+|.|.. |+..+ -+.
T Consensus 723 ------~vq~~A~~aL~NL~~~s~e~~--------~~l~e~G~i~~L~~-----LL~~~------------------d~~ 765 (810)
T 3now_A 723 ------AVQHRGIVIILNMINAGEEIA--------KKLFETDIMELLSG-----LGQLP------------------DDT 765 (810)
T ss_dssp ------HHHHHHHHHHHHHHTTCHHHH--------HHHHTSTHHHHHTT-----SCCCT------------------TST
T ss_pred ------HHHHHHHHHHHHHHhCCHHHH--------HHHHHCCCHHHHHH-----HHhCc------------------ccC
Confidence 999999999977766444332 21111 13333331 11110 113
Q ss_pred CchhhhhHHHHHHHHHhhh
Q psy14676 1629 GLDIRKAAFECMYTLLDTC 1647 (1827)
Q Consensus 1629 gl~~Rk~a~e~~~~ll~~~ 1647 (1827)
.-++++.|.+++..+++.=
T Consensus 766 ~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 766 RAKAREVATQCLAAAERYR 784 (810)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCC
Confidence 4578889999999999863
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-08 Score=138.15 Aligned_cols=491 Identities=13% Similarity=0.076 Sum_probs=285.7
Q ss_pred chHHHHHHHHHHHHHHHh----hCCCCChhhhhhHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHhhccCCCCc
Q psy14676 4 DKEQLRDISSIGLKTVIS----ELPLGSNALAANVCRRITGKLSTAIEKQ----EDVSVQLEALDILSDLLSRFGALLPS 75 (1827)
Q Consensus 4 ~~~~~Rdi~~~~Lktvi~----~lp~~~~~~~~~v~~~L~P~Ll~~l~~~----~~~~v~~~al~iL~~l~~~~~~~l~~ 75 (1827)
...++|=.++..||..|. .+|.. ....++..|+..+.....++ ..+.++.....+++.++.+.-| .
T Consensus 61 ~~~~vR~faa~~Lk~~I~~~W~~L~~e---~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p---~ 134 (1023)
T 4hat_C 61 TNPQSKFIALSILDKLITRKWKLLPND---HRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP---Q 134 (1023)
T ss_dssp CCHHHHHHHHHHHHHHHHHHGGGSCHH---HHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTT---T
T ss_pred CCHHHHHHHHHHHHHHHHhhhhcCCHH---HHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhCh---h
Confidence 356899999999999988 46653 34456667776665543211 0356677788888888887655 2
Q ss_pred hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhch---h------------H----HHHHHHHHHHhccCCCCHHHHH
Q psy14676 76 FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNL---Q------------L----YTKLIDFLLEGLTTNKSTSTNR 136 (1827)
Q Consensus 76 ~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~---~------------~----~~~l~~~ll~~L~~~~~~~~r~ 136 (1827)
.++.+++-++..+++ ++..+..+...+..+.+.+.+ . . ++.++.-+...|.+..+..+..
T Consensus 135 ~Wp~~l~dL~~~l~~-~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~ 213 (1023)
T 4hat_C 135 NWPEFIPELIGSSSS-SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIV 213 (1023)
T ss_dssp TCTTHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred hchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 567788888887764 345566666777776665321 0 1 1222222223333345567888
Q ss_pred HHHHHHHHHHHHhchhhHHhHHHHHHHHH-hhcccCchHHHHHHHHHHHHHHH-hC-CC--ccccchHHHHHHHHHHh--
Q psy14676 137 TYIQCFAAICRQAGHRFAEHIERVMPLIL-KYSREEDDELREFCLQACEAFVQ-RC-PK--EITPHIQSITELCLTYI-- 209 (1827)
Q Consensus 137 ~ai~~l~~la~~~~~~~~p~l~~i~p~l~-~~~~~~~delRe~al~ale~~~~-~~-p~--e~~p~l~~ii~~ll~~l-- 209 (1827)
.+++|+++..+..+-...- -..+++.++ +++. ++++|+.|..++-.++. .+ +. ++...+..+++..+..+
T Consensus 214 ~~L~~l~s~l~WI~i~~i~-~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~ 290 (1023)
T 4hat_C 214 ATLESLLRYLHWIPYRYIY-ETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIAT 290 (1023)
T ss_dssp HHHHHHHHHTTTSCTHHHH-SSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHhc-chhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 8999999988766532210 135778887 6664 67899999988877776 34 22 23334444444444322
Q ss_pred -ccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchh------hh
Q psy14676 210 -TYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIG------DM 282 (1827)
Q Consensus 210 -~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~------~~ 282 (1827)
-+.++......=.. . +++| -.+.+.-++.+.++..++...+. ++
T Consensus 291 ~i~p~~~~l~~~~~~----------~-----------------~~~D--~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~ 341 (1023)
T 4hat_C 291 SVMPVTADLKATYAN----------A-----------------NGND--QSFLQDLAMFLTTYLARNRALLESDESLREL 341 (1023)
T ss_dssp HTCCTTCCHHHHHHH----------T-----------------CTTH--HHHHHHHHHHHHHHHHHHGGGGTSCGGGHHH
T ss_pred HhCCCcchHHHHHhc----------c-----------------ccch--HHHHHHHHHHHHHHHHHHHHHHhCCcchhHH
Confidence 11111100000000 0 0000 02344555566666655544333 23
Q ss_pred HHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCC---
Q psy14676 283 YRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKS--- 359 (1827)
Q Consensus 283 ~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~--- 359 (1827)
+...+..|+......++++=.-++..|..+.+..... +.....+.+.+..+++.+++.+.-+.
T Consensus 342 l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e--------------~~~~~~~~~~~~~L~~vli~km~~P~e~~ 407 (1023)
T 4hat_C 342 LLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE--------------PLKKHIYEEICSQLRLVIIENMVRPEEVL 407 (1023)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTS--------------TTTGGGGHHHHHHHHHHHHHSCCCCTTCC
T ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhc--------------hHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3333446666666778888788888888887643210 11345677888888888888764322
Q ss_pred ----------------HhHHHHHH----HHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccC
Q psy14676 360 ----------------IRTRQDCL----ALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEED 419 (1827)
Q Consensus 360 ----------------~~vR~a~~----~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed 419 (1827)
..-+ ..| ..|..+....+. +.++.+++.+.+.+..
T Consensus 408 ive~d~~~~~~e~~~d~d~~-~~f~~~Rd~L~~l~~l~~~---~~~~~~~~~l~~~l~~--------------------- 462 (1023)
T 4hat_C 408 VVENDEGEIVREFVKESDTI-QLYKSEREVLVYLTHLNVI---DTEEIMISKLARQIDG--------------------- 462 (1023)
T ss_dssp EEECTTSCEEECSSCCGGGH-HHHHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHSS---------------------
T ss_pred cCCCCCccHHHHhccchHHH-HHHHHHHHHHHHHhccCHH---HHHHHHHHHHHHHhcC---------------------
Confidence 1111 122 333344443332 2334444444444310
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh-hhhhhhHHhhhhhHHHhhc-----chhhhhHHHHHHHHHHHH
Q psy14676 420 GEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR-DLIGDMYRLVSPPLIARFK-----EREENVKSDIFHAYMALL 493 (1827)
Q Consensus 420 ~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~-~~f~~~~~~l~~~L~~~~~-----d~~~~Vr~~a~~~l~~L~ 493 (1827)
...+|+.|.+++-+++.+++... +...++++.++|.|++... |....||..+.-++++..
T Consensus 463 --------------~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~ 528 (1023)
T 4hat_C 463 --------------SEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYP 528 (1023)
T ss_dssp --------------TTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCH
T ss_pred --------------CCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHH
Confidence 11369999999999999997665 4577899999998888665 344455544443333332
Q ss_pred hhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHH
Q psy14676 494 KGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSEL 573 (1827)
Q Consensus 494 ~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~ 573 (1827)
+-+.
T Consensus 529 ~wl~---------------------------------------------------------------------------- 532 (1023)
T 4hat_C 529 RFLK---------------------------------------------------------------------------- 532 (1023)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHHh----------------------------------------------------------------------------
Confidence 2110
Q ss_pred hhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhh
Q psy14676 574 QKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALK 653 (1827)
Q Consensus 574 ~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk 653 (1827)
..+...+.++..++..+.|.+++|+..|..++..++..+...-...-.-.+.||++.++..+.+...+-+...+
T Consensus 533 ------~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~ 606 (1023)
T 4hat_C 533 ------AHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQV 606 (1023)
T ss_dssp ------HCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHH
T ss_pred ------ccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHH
Confidence 01123456677788888888889999999999999888775321100113357888887777776665555555
Q ss_pred hhhHHHHHHHHhhCC
Q psy14676 654 LSTLLLLDTLLVNYP 668 (1827)
Q Consensus 654 ~~~l~~l~~l~~~~~ 668 (1827)
.....+++.++++.+
T Consensus 607 ~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 607 HTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCC
Confidence 566666666654433
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.42 E-value=4.3e-11 Score=154.68 Aligned_cols=476 Identities=12% Similarity=0.043 Sum_probs=290.1
Q ss_pred CCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcC-CchhhHHHHHHHHHH
Q psy14676 1033 SNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGD-NFYKITAEALLVLQQ 1111 (1827)
Q Consensus 1033 ~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D-~~~~V~~eAl~~l~~ 1111 (1827)
...+|.+.+.++++++..|..++..|+.++.+....-. . ...+..++.++..+.+ +++.++..|+.++..
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~-~--------~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ 86 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA-I--------MRSPQMVSAIVRTMQNTNDVETARCTAGTLHN 86 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHH-H--------HTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHH-H--------HhCcchHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 34688888888888899999999999877654321100 0 0012467777777753 478899999888888
Q ss_pred HHHHhccCCCCCCCCcchhH--HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhHHHHHHhhhhh
Q psy14676 1112 FVKVIRPLTSPSSYDFAPFT--SDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSE-LPVCLPILLDRLRNE 1188 (1827)
Q Consensus 1112 lv~~l~~~~~~~~~~~~~~l--~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~-l~~lL~~Ll~~L~~e 1188 (1827)
+... .+....+ ...++.++..+. +.+.+++..|+.+++.+.......-... -...+|.|++.++++
T Consensus 87 ls~~---------~~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~ 155 (529)
T 1jdh_A 87 LSHH---------REGLLAIFKSGGIPALVKMLG--SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 155 (529)
T ss_dssp HTTS---------HHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC
T ss_pred HHcC---------chhHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC
Confidence 6532 1111111 124566666666 6679999999999999987643211111 245788999999866
Q ss_pred hh--HHHHHHHHHHHhcCCCccccc-hh-hhhhHhhhhhhhcchh-HHHHHHHHHHHHHHHHhCCCCcChHh-HHHHHHH
Q psy14676 1189 IT--RLTTVKALTKIAASPLRIDLR-PI-LTDGIPILGSFLRKNQ-RALKLSTLLLLDTLLVNYPSAISTEM-LNKVTVE 1262 (1827)
Q Consensus 1189 ~t--R~~av~al~~ia~~~~~~dl~-p~-~~~~l~~L~~~Lrk~~-r~lR~~al~aL~~L~~~~~~~l~~~~-~~~ll~~ 1262 (1827)
.. |..+..++..++.... +.. .+ -...++.|..++++.+ ...+.++..+|..+..+.. ..... -.+.++.
T Consensus 156 ~~~~~~~~~~~L~~la~~~~--~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~g~~~~ 231 (529)
T 1jdh_A 156 NVKFLAITTDCLQILAYGNQ--ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS--NKPAIVEAGGMQA 231 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT--HHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCH--HHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcc--cHHHHHHCCCHHH
Confidence 54 7777888888875311 001 11 1346777888887654 4566677778777764321 11111 1257888
Q ss_pred hhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhh
Q psy14676 1263 LAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGS 1342 (1827)
Q Consensus 1263 L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~ 1342 (1827)
|..++.+.+..++..++.+|..++...+.. ......++.+++.+.++++++|..|+.+|++
T Consensus 232 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-------------------~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 292 (529)
T 1jdh_A 232 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-------------------EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp HHTTTTSSCHHHHHHHHHHHHHHHTTCTTC-------------------SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHHHhcCChhh-------------------HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 889999999999999999999988753321 1124688999999999999999999999999
Q ss_pred hhhhhh--------hhhHHHHHHhhhc-C--chhhHHHHHHHHHHHhhccccccchhhhhc-h-HHHHHHHHhhhhcCCc
Q psy14676 1343 IAVGNL--------QQYVPFVLKEIEN-Q--PKRQYLLLHSLKEIISWQSTSTSGVAQLQQ-F-VPAIWAQLFLHCECQE 1409 (1827)
Q Consensus 1343 i~~~~l--------~~~LP~Il~~i~~-~--~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~-~-~~~i~~~L~~~~~~~~ 1409 (1827)
++.++- ...+|.+++.+.. + +..+...+++|+-+...... ....+. . -...++.|.+.+.++.
T Consensus 293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~----~~~~~~~i~~~~~i~~L~~lL~~~~ 368 (529)
T 1jdh_A 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE----AEMAQNAVRLHYGLPVVVKLLHPPS 368 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTT----HHHHHHHHHHTTCHHHHHHTTSTTC
T ss_pred HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCch----HHHHHHHHHHcCChhHHHHHhcccc
Confidence 876431 1246777777754 2 35667778888877431100 010111 0 0123566666665544
Q ss_pred -hhHHHHHHHHHHHhhccCC-------CcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhh
Q psy14676 1410 -EGTRNVVAECLGKLTLIDP-------SNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSEL 1481 (1827)
Q Consensus 1410 -e~vR~~aAecLGkL~~~~p-------~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l 1481 (1827)
..+|..++.+|+.++.... ..++|.|.+.+++.++.+|..+..++.......+.. ...+...++..|....
T Consensus 369 ~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~-~~~i~~~~~~al~~L~ 447 (529)
T 1jdh_A 369 HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR-MEEIVEGCTGALHILA 447 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBC-HHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhcccc-HHHHHHHHHHHHHHHh
Confidence 4799999999999996321 367899999999888888876665555411000001 1122111222221111
Q ss_pred hhcccccCh-hHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHH-----HHHHHHHhhhcccccccccCCcc
Q psy14676 1482 QKDSIKLDD-DSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVE-----TIVDALCSNMVSDKEQLRDISSI 1555 (1827)
Q Consensus 1482 ~~~~~~~~~-~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~-----~~v~~l~~~l~~~~~~~~~~~~~ 1555 (1827)
..+. ... -....+++.++.++.|++++|+.+|+.+|+.|... ..... ..+..+.. +..+ +|.
T Consensus 448 ~~~~--~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--~~~~~~i~~~~~~~~L~~-l~~~-------~~~ 515 (529)
T 1jdh_A 448 RDVH--NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTE-LLHS-------RNE 515 (529)
T ss_dssp TSHH--HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHH-GGGC-------SSH
T ss_pred cCch--HHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--HHHHHHHHHcCChHHHHH-HhcC-------CCH
Confidence 0000 000 01234568999999999999999999999998843 11111 12233333 3333 333
Q ss_pred chhHHHHHHHhhh
Q psy14676 1556 GLKTVISVVYCLG 1568 (1827)
Q Consensus 1556 ~vRr~Al~~l~s~ 1568 (1827)
+||+.|..+|...
T Consensus 516 ~v~~~a~~aL~~l 528 (529)
T 1jdh_A 516 GVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988643
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-10 Score=151.53 Aligned_cols=499 Identities=12% Similarity=0.072 Sum_probs=309.3
Q ss_pred hhhHHHHHHHHHHHhhhc----HHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhh--hhhhHHHHHHh
Q psy14676 832 CNLQLTIVALSHLVMSCN----LQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEH--IERVMPLILKY 905 (1827)
Q Consensus 832 ~~r~~Ai~aL~~l~~~~~----~~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~y--l~~ilP~ll~~ 905 (1827)
..|..|..||+-+-..+. .+.|.+.....+......++..-+-.+++++..++...++.-... -...+|.++..
T Consensus 219 ~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~L 298 (810)
T 3now_A 219 SSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAM 298 (810)
T ss_dssp THHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHH
Confidence 478888889988888776 245555555444443333444444445666666665544432222 23689999999
Q ss_pred hcccchHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcc
Q psy14676 906 SREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQS 985 (1827)
Q Consensus 906 l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~ 985 (1827)
++.+++.+++.|..++...... .+.+-++- ....+.|...+...++.++..+..+|... |..
T Consensus 299 l~s~~~~~q~~A~~al~~aa~~--~~~R~~I~-----------~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl-----~s~ 360 (810)
T 3now_A 299 ATTDDELQQRVACECLIAASSK--KDKAKALC-----------EQGVDILKRLYHSKNDGIRVRALVGLCKL-----GSY 360 (810)
T ss_dssp HHSSCHHHHHHHHHHHHHHTTS--HHHHHTTH-----------HHHHHHHHHHTTCSCHHHHHHHHHHHHHH-----HTT
T ss_pred hCCCCHHHHHHHHHHHHHHcCC--cHHHHHHH-----------HcCcHHHHHHHcCCCHHHHHHHHHHHHHh-----ccc
Confidence 9999999998888887663321 12222211 11124445555544555555444332211 100
Q ss_pred cc-cchhhhhhh-hHHHHHHHHHhhhhcc--ccchhhHHHHHHhhhcccC--------CCCchHHHHHHhccCChhhHHH
Q psy14676 986 TS-TSGVAQLQQ-FVPAIWAQLFLHCECQ--EEGTRNVVAECLGKLTLID--------PSNLLPRLQESLKSNSALMRTT 1053 (1827)
Q Consensus 986 ~~-~~~~~~l~~-~~p~ll~~L~~~l~~~--e~~vR~~a~e~Lg~L~~~~--------~~~llP~L~~~L~s~~~~~R~~ 1053 (1827)
.. ......+.. -...+++.+.+.+.++ +.++|+-++++|..|+... -..++|.|.+.+++++......
T Consensus 361 ~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~ 440 (810)
T 3now_A 361 GGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYG 440 (810)
T ss_dssp TTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHH
T ss_pred cccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHH
Confidence 00 000011111 1234455555555555 7889999999999997552 1358999999999999999999
Q ss_pred HHHHHHHHHHhccc--------cccccccc----------hhhh-----hhhhhhhhHHHHHhhcCCchhhHHHHHHHHH
Q psy14676 1054 HQSNQTFNVIIQRN--------DIHNHNEE----------TSFI-----YSFYYFLLSPVIASVGDNFYKITAEALLVLQ 1110 (1827)
Q Consensus 1054 a~~~L~~l~~~~~~--------~l~~~~~~----------~~~~-----~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~ 1110 (1827)
+++.|+-+...... .+..|.+. .+.. .-.=...+|.+++.+..+.+.++.+|.++++
T Consensus 441 al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~ 520 (810)
T 3now_A 441 VVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLN 520 (810)
T ss_dssp HHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999977664311 01111110 0000 0001147899999999999999999999999
Q ss_pred HHHHHhccCCCCCCCCcchhHH--HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhh--hh-hhhhhHHHHHHhh
Q psy14676 1111 QFVKVIRPLTSPSSYDFAPFTS--DIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYL--KS-ELPVCLPILLDRL 1185 (1827)
Q Consensus 1111 ~lv~~l~~~~~~~~~~~~~~l~--~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l--~~-~l~~lL~~Ll~~L 1185 (1827)
.++.. .+.+..+- ..++.++..+. +.+.++|+.|..+++.+........ .. .....+|.|++.|
T Consensus 521 NLA~d---------~~~r~~Vv~~Gaip~Lv~LL~--s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL 589 (810)
T 3now_A 521 AVCGL---------KELRGKVVQEGGVKALLRMAL--EGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLL 589 (810)
T ss_dssp HHHTS---------HHHHHHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTT
T ss_pred HHcCC---------HHHHHHHHHCCCHHHHHHHHc--cCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHh
Confidence 98731 11222221 24566666666 5678899999999999987643221 11 1234789999988
Q ss_pred hhhhh---HHHHHHHHHHHhcCCCccccc-hhh-hhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhH--HH
Q psy14676 1186 RNEIT---RLTTVKALTKIAASPLRIDLR-PIL-TDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEML--NK 1258 (1827)
Q Consensus 1186 ~~e~t---R~~av~al~~ia~~~~~~dl~-p~~-~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~--~~ 1258 (1827)
..+.+ +..|+.||+.++..+. +.. .++ ..+++.|..++...+..+|.+++.+|+.++.... .....+ ..
T Consensus 590 ~~~~~~l~~~eAl~AL~NLa~~~d--~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~--~~~~~v~~~g 665 (810)
T 3now_A 590 QQDCTALENFESLMALTNLASMNE--SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED--VIKMFEGNND 665 (810)
T ss_dssp STTSCHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH--HHHHHHSSSS
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCH--HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH--HHHHHHhccC
Confidence 75532 5689999999987531 111 122 3467888889988888999999999999876311 111122 14
Q ss_pred HHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHH
Q psy14676 1259 VTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASY 1338 (1827)
Q Consensus 1259 ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~ 1338 (1827)
.++.|..++...|..++..+..+|+.++...+... ..+.. ....++.+...+.+++.++|..|+.
T Consensus 666 ~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~---------~~ii~------~~g~I~~Lv~LL~s~d~~vq~~A~~ 730 (810)
T 3now_A 666 RVKFLALLCEDEDEETATACAGALAIITSVSVKCC---------EKILA------IASWLDILHTLIANPSPAVQHRGIV 730 (810)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHH---------HHHHT------STTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHH---------HHHHH------HcCCHHHHHHHHCCCCHHHHHHHHH
Confidence 67788889999999999999999999887443210 01111 0347788889999999999999999
Q ss_pred HHhhhhhhhh--h------hhHHHHHHhhhcC----chhhHHHHHHHHHHHh
Q psy14676 1339 TLGSIAVGNL--Q------QYVPFVLKEIENQ----PKRQYLLLHSLKEIIS 1378 (1827)
Q Consensus 1339 aLG~i~~~~l--~------~~LP~Il~~i~~~----~~~q~~~l~aL~Eii~ 1378 (1827)
+|+++..++- . ..+|.+.+.++.. ++.....+.+|.-++.
T Consensus 731 aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 731 IILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp HHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 9999765431 1 2445555555332 2334445566666554
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=4e-11 Score=159.15 Aligned_cols=452 Identities=13% Similarity=0.092 Sum_probs=302.7
Q ss_pred HHhhhhccccchhhHHHHHHhhhcccCC--------CCchHHHHHHhccC-ChhhHHHHHHHHHHHHHhccccccccccc
Q psy14676 1005 LFLHCECQEEGTRNVVAECLGKLTLIDP--------SNLLPRLQESLKSN-SALMRTTHQSNQTFNVIIQRNDIHNHNEE 1075 (1827)
Q Consensus 1005 L~~~l~~~e~~vR~~a~e~Lg~L~~~~~--------~~llP~L~~~L~s~-~~~~R~~a~~~L~~l~~~~~~~l~~~~~~ 1075 (1827)
|...+.+++..+|..+..+|+.++.... ...+|.+.+.|++. ++..|..++..|..+....... .
T Consensus 19 Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~-~----- 92 (644)
T 2z6h_A 19 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL-L----- 92 (644)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHH-H-----
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH-H-----
Confidence 3334467788999999999999986542 24689999999764 7889999999998665432210 0
Q ss_pred hhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcch-hH-HHHHHHHHHHHhhcCCCHHHHH
Q psy14676 1076 TSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAP-FT-SDIYQCTLVRLKAADIDQEVKE 1153 (1827)
Q Consensus 1076 ~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~-~l-~~l~~~ll~~L~~~D~d~eVre 1153 (1827)
. .+-...+|.++..++++.+.++..|+.++..+...- ..... +. ...++.++..+. +.+.+++.
T Consensus 93 --~--i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~--------~~~~~~v~~~g~i~~Lv~lL~--~~~~~~~~ 158 (644)
T 2z6h_A 93 --A--IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ--------EGAKMAVRLAGGLQKMVALLN--KTNVKFLA 158 (644)
T ss_dssp --H--HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS--------TTHHHHHHHTTHHHHHHHGGG--CCCHHHHH
T ss_pred --H--HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc--------chhHHHHHHCCChHHHHHHHC--cCCHHHHH
Confidence 0 011257899999999999999999999999988541 11111 11 245677777776 55778999
Q ss_pred HHHHHHHHHHHHhhhhhhh-hhhhhHHHHHHhhhhh---hhHHHHHHHHHHHhcCCCccccch-hh-hhhHhhhhhhhcc
Q psy14676 1154 RAISCMGQIICNLGDYLKS-ELPVCLPILLDRLRNE---ITRLTTVKALTKIAASPLRIDLRP-IL-TDGIPILGSFLRK 1227 (1827)
Q Consensus 1154 ~Ai~alg~l~~~~g~~l~~-~l~~lL~~Ll~~L~~e---~tR~~av~al~~ia~~~~~~dl~p-~~-~~~l~~L~~~Lrk 1227 (1827)
.++.++..+.....+.-.. .-...++.|++.+++. ..+..+++++..++.... ... ++ ..+++.|..++++
T Consensus 159 ~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~---~~~~l~~~g~l~~L~~ll~~ 235 (644)
T 2z6h_A 159 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS---NKPAIVEAGGMQALGLHLTD 235 (644)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTT---HHHHHHHTTHHHHHHTTTTC
T ss_pred HHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcc---cHHHHHHCCCHHHHHHHHhc
Confidence 9999999887532211000 1124577777777654 347788888888875422 122 22 2468889999988
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhccc
Q psy14676 1228 NQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGR 1307 (1827)
Q Consensus 1228 ~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~ 1307 (1827)
.+..+|..++.+|..+....+.. .....+++.|..++.+.|..++..+..+|+.++...+.. ...+-
T Consensus 236 ~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~------~~~v~---- 302 (644)
T 2z6h_A 236 PSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN------KMMVC---- 302 (644)
T ss_dssp SCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH------HHHHH----
T ss_pred CCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH------HHHHH----
Confidence 88899999999999998764332 234478888999999999999999999999987643210 00000
Q ss_pred ccCCCchhhHHHHHHHhcCCC--CHhHHHHHHHHHhhhhhhh---------h--hhhHHHHHHhhhcC--chhhHHHHHH
Q psy14676 1308 HTDLTSVADLKQVILNAFTPT--SEEVKSAASYTLGSIAVGN---------L--QQYVPFVLKEIENQ--PKRQYLLLHS 1372 (1827)
Q Consensus 1308 ~~~~~~~~~l~~~~l~~~~~~--s~eVr~aAa~aLG~i~~~~---------l--~~~LP~Il~~i~~~--~~~q~~~l~a 1372 (1827)
....++.++..+.+. .++|+..|+.+||+++..+ + ...+|.+++.+... +..+....++
T Consensus 303 ------~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 376 (644)
T 2z6h_A 303 ------QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 376 (644)
T ss_dssp ------HTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred ------HcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHH
Confidence 023556666666543 3799999999999986421 1 24678888888763 2456677788
Q ss_pred HHHHHhhccccccchhhhh--chHHHHHHHHhhh-----------------h-cCCchhHHHHHHHHHHHhhcc------
Q psy14676 1373 LKEIISWQSTSTSGVAQLQ--QFVPAIWAQLFLH-----------------C-ECQEEGTRNVVAECLGKLTLI------ 1426 (1827)
Q Consensus 1373 L~Eii~~~~~s~~g~~~L~--~~~~~i~~~L~~~-----------------~-~~~~e~vR~~aAecLGkL~~~------ 1426 (1827)
|+.+..... . ...+. ..++.|...+... . +...+.++..++.+|+.|+.-
T Consensus 377 L~nLa~~~~-~---~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~ 452 (644)
T 2z6h_A 377 IRNLALCPA-N---HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIV 452 (644)
T ss_dssp HHHHTTSGG-G---HHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHccCHH-H---HHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 877753110 0 11111 1333333333321 0 113466788888999988742
Q ss_pred -CCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhc
Q psy14676 1427 -DPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLE 1505 (1827)
Q Consensus 1427 -~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~ 1505 (1827)
.-...+|.|.+++.+.++.+|..+..+|..+..+ +..+ ..+. ....++.+..+++
T Consensus 453 l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~------~~~~--------~~i~----------~~g~l~~L~~ll~ 508 (644)
T 2z6h_A 453 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD------KEAA--------EAIE----------AEGATAPLTELLH 508 (644)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS------HHHH--------HHHH----------HTTCHHHHHHHTT
T ss_pred HHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC------HHHH--------HHHH----------HcCChhHHHHHHc
Confidence 1246789999999999999999999998887642 1111 0000 1124578889999
Q ss_pred CCchHHHHHHHHHhhhhhhhh
Q psy14676 1506 DKNGEVQNLAVKCLGPLVNKV 1526 (1827)
Q Consensus 1506 D~~~~Vr~~a~~~Lg~L~~~l 1526 (1827)
++++.||..|+.+|+.+...-
T Consensus 509 ~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 509 SRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp CSCHHHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHHHHHhccC
Confidence 999999999999999998644
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.37 E-value=6.6e-11 Score=152.94 Aligned_cols=447 Identities=13% Similarity=0.084 Sum_probs=293.6
Q ss_pred HHHHhhhhccccchhhHHHHHHhhhcccCC--------CCchHHHHHHhcc-CChhhHHHHHHHHHHHHHhccccccccc
Q psy14676 1003 AQLFLHCECQEEGTRNVVAECLGKLTLIDP--------SNLLPRLQESLKS-NSALMRTTHQSNQTFNVIIQRNDIHNHN 1073 (1827)
Q Consensus 1003 ~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~--------~~llP~L~~~L~s-~~~~~R~~a~~~L~~l~~~~~~~l~~~~ 1073 (1827)
+.|...+.++++.+|..+..+|+.++.... ...+|.+.+.+++ +++..|..++..|..+...... +..
T Consensus 20 ~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~--~~~- 96 (529)
T 1jdh_A 20 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG--LLA- 96 (529)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHH--HHH-
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchh--HHH-
Confidence 344444567888999999999999875421 2478899999965 4788999999999976543210 000
Q ss_pred cchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhH--HHHHHHHHHHHhhcCCCHHH
Q psy14676 1074 EETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFT--SDIYQCTLVRLKAADIDQEV 1151 (1827)
Q Consensus 1074 ~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l--~~l~~~ll~~L~~~D~d~eV 1151 (1827)
+. -...+|.++..++++++.++..|++++..+...- ...+..+ ...++.++..+. +.+.++
T Consensus 97 -----i~--~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--------~~~~~~i~~~g~i~~L~~ll~--~~~~~~ 159 (529)
T 1jdh_A 97 -----IF--KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ--------EGAKMAVRLAGGLQKMVALLN--KTNVKF 159 (529)
T ss_dssp -----HH--HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC--------TTHHHHHHHHTHHHHHHHGGG--CCCHHH
T ss_pred -----HH--HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC--------cchHHHHHHcCCHHHHHHHHh--cCCHHH
Confidence 00 1257889999999999999999999999988531 1112222 345677777776 567899
Q ss_pred HHHHHHHHHHHHHHhhhhhhh--hhhhhHHHHHHhhhhh---hhHHHHHHHHHHHhcCCCccccchhh-hhhHhhhhhhh
Q psy14676 1152 KERAISCMGQIICNLGDYLKS--ELPVCLPILLDRLRNE---ITRLTTVKALTKIAASPLRIDLRPIL-TDGIPILGSFL 1225 (1827)
Q Consensus 1152 re~Ai~alg~l~~~~g~~l~~--~l~~lL~~Ll~~L~~e---~tR~~av~al~~ia~~~~~~dl~p~~-~~~l~~L~~~L 1225 (1827)
+..+..++..+.....+ ... .-...++.|++.+++. ..+..+.+++..++..+.. -..++ ..+++.|..++
T Consensus 160 ~~~~~~~L~~la~~~~~-~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~g~~~~L~~ll 236 (529)
T 1jdh_A 160 LAITTDCLQILAYGNQE-SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN--KPAIVEAGGMQALGLHL 236 (529)
T ss_dssp HHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTH--HHHHHHTTHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCHH-HHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCccc--HHHHHHCCCHHHHHHHH
Confidence 99999999987642111 111 1123566666666543 3467788888888754321 11122 35688888999
Q ss_pred cchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhc
Q psy14676 1226 RKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQI 1305 (1827)
Q Consensus 1226 rk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgei 1305 (1827)
++.+..++..++.+|..+....+.. .....+++.|..++.+.|..++..++.+|+.++...+.. ...+.+
T Consensus 237 ~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~------~~~~~~- 306 (529)
T 1jdh_A 237 TDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN------KMMVCQ- 306 (529)
T ss_dssp TSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHH------HHHHHH-
T ss_pred hCCChHHHHHHHHHHHHHhcCChhh---HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH------HHHHHH-
Confidence 8888889999999999998764432 123578888999999999999999999999887643211 000001
Q ss_pred ccccCCCchhhHHHHHHHhcCC--CCHhHHHHHHHHHhhhhhhhh-----------hhhHHHHHHhhhcC--chhhHHHH
Q psy14676 1306 GRHTDLTSVADLKQVILNAFTP--TSEEVKSAASYTLGSIAVGNL-----------QQYVPFVLKEIENQ--PKRQYLLL 1370 (1827)
Q Consensus 1306 G~~~~~~~~~~l~~~~l~~~~~--~s~eVr~aAa~aLG~i~~~~l-----------~~~LP~Il~~i~~~--~~~q~~~l 1370 (1827)
...++.+++.+.+ ++++++..|+.+||+++.++- ...+|.+++.+.+. +..+...+
T Consensus 307 ---------~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~ 377 (529)
T 1jdh_A 307 ---------VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 377 (529)
T ss_dssp ---------TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHH
T ss_pred ---------cCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHH
Confidence 1245556666643 347999999999999865421 13578888888763 24566677
Q ss_pred HHHHHHHhhccccccchhhhhchH-HHHHHHHhhhhcCCc----------------------hhHHHHHHHHHHHhhcc-
Q psy14676 1371 HSLKEIISWQSTSTSGVAQLQQFV-PAIWAQLFLHCECQE----------------------EGTRNVVAECLGKLTLI- 1426 (1827)
Q Consensus 1371 ~aL~Eii~~~~~s~~g~~~L~~~~-~~i~~~L~~~~~~~~----------------------e~vR~~aAecLGkL~~~- 1426 (1827)
++|+.+... ......+. ..+++.|++.+.+.+ ++++..++.+|+.|+..
T Consensus 378 ~~l~nl~~~-------~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~ 450 (529)
T 1jdh_A 378 GLIRNLALC-------PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 450 (529)
T ss_dssp HHHHHHTTS-------GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHhcC-------hhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc
Confidence 888887541 11111111 123333333332222 33444566777777641
Q ss_pred ------CCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHH
Q psy14676 1427 ------DPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKML 1500 (1827)
Q Consensus 1427 ------~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~l 1500 (1827)
.-...+|.|.+++.++++.+|..+..++..+..+ +..+ ..+ .....++.+
T Consensus 451 ~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~------~~~~--------~~i----------~~~~~~~~L 506 (529)
T 1jdh_A 451 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD------KEAA--------EAI----------EAEGATAPL 506 (529)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS------HHHH--------HHH----------HHTTCHHHH
T ss_pred hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC------HHHH--------HHH----------HHcCChHHH
Confidence 1235679999999999999999999999887632 1111 000 012345888
Q ss_pred HHhhcCCchHHHHHHHHHhhhh
Q psy14676 1501 LRLLEDKNGEVQNLAVKCLGPL 1522 (1827)
Q Consensus 1501 l~~l~D~~~~Vr~~a~~~Lg~L 1522 (1827)
..+++|+++.||..|..+|..+
T Consensus 507 ~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 507 TELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHhc
Confidence 9999999999999999998875
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-11 Score=142.12 Aligned_cols=202 Identities=18% Similarity=0.207 Sum_probs=168.3
Q ss_pred HHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCC
Q psy14676 162 PLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGE 241 (1827)
Q Consensus 162 p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~d 241 (1827)
|-+.+.+++.+-..|..++.++..++..||+-..+.+..+++.+.+.+..|+|
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~--------------------------- 70 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSN--------------------------- 70 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSC---------------------------
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCC---------------------------
Confidence 34555566778888999999999999998875555667888888877632221
Q ss_pred CCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCC
Q psy14676 242 DEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSP 321 (1827)
Q Consensus 242 de~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~ 321 (1827)
.+||.+|+++++.++...++.+.++.+.++|.+..++++....||.++..++.+++...
T Consensus 71 ----------------~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~----- 129 (242)
T 2qk2_A 71 ----------------VVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST----- 129 (242)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-----
T ss_pred ----------------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-----
Confidence 37999999999999999888889999999999999999999999999999999988421
Q ss_pred CCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhC-cc-cccCchhhHHHHHHHHhhhh
Q psy14676 322 LTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTL-PG-CLAPSLPALIPDVTSVAEWD 399 (1827)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl-~~-~l~~~l~~Llp~i~~~L~~~ 399 (1827)
.++.+++.+...|+++++.+|..++.+++.+.... |. .+.+|++.++|.+..++.
T Consensus 130 ---------------------~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~-- 186 (242)
T 2qk2_A 130 ---------------------SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLN-- 186 (242)
T ss_dssp ---------------------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHT--
T ss_pred ---------------------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhc--
Confidence 24678888899999999999999999999987776 44 457899999999999983
Q ss_pred hcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh-hhhhhhHHhhhhh
Q psy14676 400 EEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR-DLIGDMYRLVSPP 469 (1827)
Q Consensus 400 ~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~-~~f~~~~~~l~~~ 469 (1827)
|.+|.||.+|.++++.++...| +.|.+|++.+-+.
T Consensus 187 -----------------------------------D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~ 222 (242)
T 2qk2_A 187 -----------------------------------EPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPL 222 (242)
T ss_dssp -----------------------------------SSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHH
T ss_pred -----------------------------------CCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHH
Confidence 4579999999999999999999 5688887776443
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-09 Score=143.42 Aligned_cols=432 Identities=13% Similarity=0.108 Sum_probs=282.9
Q ss_pred HHHHHhhhhccccchhhHHHHHHhhhcccC-CCCchHHHHHHh--ccCChhhHHHHHHHHHHHHHhccccccccccchhh
Q psy14676 1002 WAQLFLHCECQEEGTRNVVAECLGKLTLID-PSNLLPRLQESL--KSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSF 1078 (1827)
Q Consensus 1002 l~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~-~~~llP~L~~~L--~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~ 1078 (1827)
++.+.+-+.++.+.+|..|..+||.+.... .+.++|.+.+++ .+.++.+|..|+.++..++...++.+.+
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~------- 185 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM------- 185 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC-------
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc-------
Confidence 344555567788888988999999886432 356899999999 8889999999999999777777665442
Q ss_pred hhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCC-----------
Q psy14676 1079 IYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADI----------- 1147 (1827)
Q Consensus 1079 ~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~----------- 1147 (1827)
+.+++.+...+.|+++.|...|+.++.++... + ...+.++++.++..+..-+...+.
T Consensus 186 -----~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~-~------~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~ 253 (621)
T 2vgl_A 186 -----GDWTSRVVHLLNDQHLGVVTAATSLITTLAQK-N------PEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVP 253 (621)
T ss_dssp -----CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-C------HHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEE
T ss_pred -----hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh-C------hHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCC
Confidence 15788888999999999999999999998753 1 123445555555544333322111
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhh-----------hhh--hhHHHHHHHHHHHhcCCCccccchhh
Q psy14676 1148 DQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRL-----------RNE--ITRLTTVKALTKIAASPLRIDLRPIL 1214 (1827)
Q Consensus 1148 d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L-----------~~e--~tR~~av~al~~ia~~~~~~dl~p~~ 1214 (1827)
++-.+-..+..++.+...-.......+..+++.++..+ +|. ..-.++++++-.+... .+++
T Consensus 254 ~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~------~~~~ 327 (621)
T 2vgl_A 254 APWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSE------PNLL 327 (621)
T ss_dssp SHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCC------HHHH
T ss_pred CchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCc------HHHH
Confidence 34455555555554432111122233444555555432 122 3367777777666421 3466
Q ss_pred hhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcC-CCChhHHHHHHHHHHHHHHhCCCcc
Q psy14676 1215 TDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVS-ESDLHIAQLTLTLLTSIAKIQPNAL 1293 (1827)
Q Consensus 1215 ~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~-d~D~~l~~~al~~L~~l~~~~~~~~ 1293 (1827)
..++..|..++...+..+|..++.+|..++...+. .+.+......+...+. |.|..++..++++|..++..
T Consensus 328 ~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~---~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~----- 399 (621)
T 2vgl_A 328 VRACNQLGQFLQHRETNLRYLALESMCTLASSEFS---HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR----- 399 (621)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT---HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH-----
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc---HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh-----
Confidence 77888899999877889999999999999876532 2333444444555667 99999999999998877642
Q ss_pred chhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhh---hhhhhHHHHHHhhhcCch-hhHHH
Q psy14676 1294 VEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVG---NLQQYVPFVLKEIENQPK-RQYLL 1369 (1827)
Q Consensus 1294 ~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~---~l~~~LP~Il~~i~~~~~-~q~~~ 1369 (1827)
+....++..+...+.+.+.+.|..+..++|.++.. ....|+.++++.+...+. ...-+
T Consensus 400 ------------------~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev 461 (621)
T 2vgl_A 400 ------------------SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEV 461 (621)
T ss_dssp ------------------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHH
T ss_pred ------------------hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHH
Confidence 12356777777778788899999999999987753 455688888888765321 22234
Q ss_pred HHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCC--chhHHHHHHHHHHHhhccC-------CCcchHHHHHhhh
Q psy14676 1370 LHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQ--EEGTRNVVAECLGKLTLID-------PSNLLPRLQESLK 1440 (1827)
Q Consensus 1370 l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~--~e~vR~~aAecLGkL~~~~-------p~~~lP~L~~~l~ 1440 (1827)
+..+..++.. ...++.|. ...+++.+.+. .+.+-.+++.++|.-+..- |..++..+.+.+.
T Consensus 462 ~~~l~~ii~~-------~~~~~~~~---~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~ 531 (621)
T 2vgl_A 462 WYRVIQIVIN-------RDDVQGYA---AKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFH 531 (621)
T ss_dssp HHHHHHHHGG-------GCSCHHHH---HHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC-------ChhHHHHH---HHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhc
Confidence 6677777752 23344432 23344443322 2445567789999987532 2244556666677
Q ss_pred cCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhc--CCchHHHHHHHHH
Q psy14676 1441 SNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLE--DKNGEVQNLAVKC 1518 (1827)
Q Consensus 1441 ~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~--D~~~~Vr~~a~~~ 1518 (1827)
.+++.+|..+++|+-.+....+ .++ ..+...|-.... |.+++||..|..-
T Consensus 532 ~~~~~v~~~~Lta~~Kl~~~~p-----~~~-----------------------~~i~~~l~~~~~~~~~d~evrdRA~~y 583 (621)
T 2vgl_A 532 LCSVPTRALLLSTYIKFVNLFP-----EVK-----------------------ATIQDVLRSDSQLKNADVELQQRAVEY 583 (621)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCG-----GGH-----------------------HHHHHHHSSHHHHSCSSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHCh-----HHH-----------------------HHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 8899999999998877765332 111 122233323444 9999999998876
Q ss_pred hhhh
Q psy14676 1519 LGPL 1522 (1827)
Q Consensus 1519 Lg~L 1522 (1827)
+.-+
T Consensus 584 ~~Ll 587 (621)
T 2vgl_A 584 LRLS 587 (621)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.6e-11 Score=136.50 Aligned_cols=196 Identities=12% Similarity=0.171 Sum_probs=164.9
Q ss_pred CchHHHHHHHHHHHHH-HHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcc-CCCC-chhHH
Q psy14676 3 SDKEQLRDISSIGLKT-VISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFG-ALLP-SFHFV 79 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lkt-vi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~-~~l~-~~~~~ 79 (1827)
|.+=+-|..+..+|.. +++.-|.-... ..-...++..|...+.++.++.++..|+.+|+.+++.++ +.+. +|+..
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~--~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~ 104 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKST--SQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSL 104 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCT--TCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccC--cccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH
Confidence 4555678888888888 87653331100 001346677888888667799999999999999999999 9999 89999
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh----HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc---hh
Q psy14676 80 ILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ----LYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG---HR 152 (1827)
Q Consensus 80 il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~----~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~---~~ 152 (1827)
+++.++..+.+..+.||.+|..|+..+++.+++. .+..+++.++..|.+. ++.+|..++.+++.++...+ ..
T Consensus 105 llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~~~~~~ 183 (249)
T 2qk1_A 105 VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEKDGYST 183 (249)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCCSCSHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCcchh
Confidence 9999999999999999999999999999998532 2567888888888654 68999999999999999988 67
Q ss_pred hHHhH-HHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCc-cccchHHH
Q psy14676 153 FAEHI-ERVMPLILKYSREEDDELREFCLQACEAFVQRCPKE-ITPHIQSI 201 (1827)
Q Consensus 153 ~~p~l-~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e-~~p~l~~i 201 (1827)
|.+|+ +.++|.+.+.+.+.+.++|+.|..++..+.+..|++ |.||++.+
T Consensus 184 l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 184 LQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 99999 999999999999999999999999999999999874 88988764
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.7e-11 Score=136.94 Aligned_cols=187 Identities=12% Similarity=0.108 Sum_probs=160.3
Q ss_pred cchhhHHHHHHHHHHH-HHHHcCCch--hhhHHhhhHHHHhhc-CCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCC
Q psy14676 255 DMSWKVRRAAAKCLEA-IIATRRDLI--GDMYRLVSPPLIARF-KEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQM 330 (1827)
Q Consensus 255 D~sWkVRraAak~L~~-l~~~~~~~l--~~~~~~v~p~L~~~l-~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~ 330 (1827)
...|+-|++|..+|.. ++...++.. ..-|..++..|.+.+ ++.+..||..|+.+++.+++..+.
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~------------ 94 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT------------ 94 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT------------
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc------------
Confidence 4579999999999999 887766654 345667888999999 899999999999999999954320
Q ss_pred CCCCChHhhHH-hhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccc-cCchhhHHHHHHHHhhhhhcccCCCCC
Q psy14676 331 DQEDSPLCLLS-TQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCL-APSLPALIPDVTSVAEWDEEEGLGGEG 408 (1827)
Q Consensus 331 ~~~~~~~~~l~-~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l-~~~l~~Llp~i~~~L~~~~~~~~~~~~ 408 (1827)
..+. ++...++|.++..++|+.+.||.++...+..++...+... ..|++.+++.+...++
T Consensus 95 -------~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~----------- 156 (249)
T 2qk1_A 95 -------PGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMK----------- 156 (249)
T ss_dssp -------TTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTT-----------
T ss_pred -------ccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHc-----------
Confidence 1245 7888999999999999999999999999999998875422 2348999999999983
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh---hhhhhhH-HhhhhhHHHhhcchhhhhHHH
Q psy14676 409 GGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR---DLIGDMY-RLVSPPLIARFKEREENVKSD 484 (1827)
Q Consensus 409 ~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~---~~f~~~~-~~l~~~L~~~~~d~~~~Vr~~ 484 (1827)
..+|++|.+++.+|..++.+.+ ..|.+|+ +.++|.+.+.+.|....||.+
T Consensus 157 --------------------------~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~a 210 (249)
T 2qk1_A 157 --------------------------HKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTI 210 (249)
T ss_dssp --------------------------CSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHH
T ss_pred --------------------------CCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 2489999999999999999988 5789999 999999999999999999999
Q ss_pred HHHHHHHHHhhcc
Q psy14676 485 IFHAYMALLKGTR 497 (1827)
Q Consensus 485 a~~~l~~L~~~~g 497 (1827)
|+.++..+.+.+|
T Consensus 211 A~~~l~~i~~~vG 223 (249)
T 2qk1_A 211 GFESFAILIKIFG 223 (249)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999888
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.18 E-value=3.1e-09 Score=136.75 Aligned_cols=387 Identities=12% Similarity=0.115 Sum_probs=252.7
Q ss_pred hhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHH-----HHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy14676 1085 FLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSD-----IYQCTLVRLKAADIDQEVKERAISCM 1159 (1827)
Q Consensus 1085 ~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~-----l~~~ll~~L~~~D~d~eVre~Ai~al 1159 (1827)
.-++.+++.++..++....+|...+..+... .. .|-++. +++.++.-|. .+.+++++..|..||
T Consensus 57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~---------e~-~ppi~~ii~~G~ip~LV~lL~-~~~~~~lq~~Aa~aL 125 (510)
T 3ul1_B 57 WSVEDIVKGINSNNLESQLQATQAARKLLSR---------EK-QPPIDNIIRAGLIPKFVSFLG-KTDCSPIQFESAWAL 125 (510)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTC---------SS-CCCHHHHHHTTHHHHHHHHTT-CTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---------CC-CchHHHHHHCCCHHHHHHHHC-CCCCHHHHHHHHHHH
Confidence 3467888889999999998888887776521 11 122222 3555666665 355689999999999
Q ss_pred HHHHHHhhhhhhhhh-hhhHHHHHHhhhhhh--hHHHHHHHHHHHhcCCCccccchhh--hhhHhhhhhhhcchh-----
Q psy14676 1160 GQIICNLGDYLKSEL-PVCLPILLDRLRNEI--TRLTTVKALTKIAASPLRIDLRPIL--TDGIPILGSFLRKNQ----- 1229 (1827)
Q Consensus 1160 g~l~~~~g~~l~~~l-~~lL~~Ll~~L~~e~--tR~~av~al~~ia~~~~~~dl~p~~--~~~l~~L~~~Lrk~~----- 1229 (1827)
+.++....+.-..-. ...+|.|++.|++++ .|..|+.+|+.|+.... .....+ ..+++.|..+++..+
T Consensus 126 ~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~--~~r~~v~~~G~i~~Ll~lL~~~~~~~~~ 203 (510)
T 3ul1_B 126 TNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS--AFRDLVIKHGAIDPLLALLAVPDLSTLA 203 (510)
T ss_dssp HHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTCHHHHHHHTCSSCGGGSC
T ss_pred HHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH--HHHHHHHHcCChHHHHHHHHhccchhhh
Confidence 999864332211112 237888999887654 49999999999986421 111111 345777888877543
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhccccc
Q psy14676 1230 RALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHT 1309 (1827)
Q Consensus 1230 r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~ 1309 (1827)
..+...+..+|..+.........-..+..+++.|..++.+.|..++..++.+|+.++...+.. . ..+
T Consensus 204 ~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~------~-------~~i 270 (510)
T 3ul1_B 204 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER------I-------EMV 270 (510)
T ss_dssp HHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH------H-------HHH
T ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhh------H-------HHH
Confidence 234556777888877654443344566789999999999999999999999999887532210 0 000
Q ss_pred CCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhcCchhhHHHHHHHHHHHhhccccccchhh
Q psy14676 1310 DLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIENQPKRQYLLLHSLKEIISWQSTSTSGVAQ 1389 (1827)
Q Consensus 1310 ~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~~~~~q~~~l~aL~Eii~~~~~s~~g~~~ 1389 (1827)
....+++.++..+.+++..++..|+.+||+++.++-.. .+ .++.. | .
T Consensus 271 ---~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~--------------~~--------~i~~~------g--~ 317 (510)
T 3ul1_B 271 ---VKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ--------------TQ--------KVIDA------G--A 317 (510)
T ss_dssp ---HTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHH--------------HH--------HHHHT------T--G
T ss_pred ---HhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHH--------------HH--------HHhhc------c--c
Confidence 01246778888899999999999999999987543110 00 01110 0 1
Q ss_pred hhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCC--------CcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhc
Q psy14676 1390 LQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDP--------SNLLPRLQESLKSNSALMRTTVLTAVKFTISDQ 1461 (1827)
Q Consensus 1390 L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p--------~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~ 1461 (1827)
+ +.|...+.+.++.+|..++.+|+.|+..++ ..++|.|.+++++.++.+|..+..||..+....
T Consensus 318 l--------~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~ 389 (510)
T 3ul1_B 318 L--------AVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG 389 (510)
T ss_dssp G--------GGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred h--------HHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccC
Confidence 1 122233345567788889999999886553 367899999999999999999999999887643
Q ss_pred CCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhh----hhHHHHHHH
Q psy14676 1462 MTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKE----FQVETIVDA 1537 (1827)
Q Consensus 1462 ~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~----~~~~~~v~~ 1537 (1827)
.. .... ++ +...+++.|+.+|..+|+.++..++.+|..+.+.-.. +....++..
T Consensus 390 ~~---~~~~---------~L----------~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee 447 (510)
T 3ul1_B 390 TV---EQIV---------YL----------VHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEE 447 (510)
T ss_dssp CH---HHHH---------HH----------HHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CH---HHHH---------HH----------HHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHH
Confidence 21 1111 11 1123568999999999999999999999998864321 223333332
Q ss_pred -----HHhhhcccccccccCCccchhHHHHHHHhh
Q psy14676 1538 -----LCSNMVSDKEQLRDISSIGLKTVISVVYCL 1567 (1827)
Q Consensus 1538 -----l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s 1567 (1827)
.+..++.. +|.+|+..|...+..
T Consensus 448 ~ggl~~ie~Lq~~-------~n~~i~~~A~~iie~ 475 (510)
T 3ul1_B 448 CGGLDKIEALQRH-------ENESVYKASLNLIEK 475 (510)
T ss_dssp TTHHHHHHHGGGC-------SSHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHcC-------CCHHHHHHHHHHHHH
Confidence 12333332 222788887776643
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.18 E-value=4.3e-09 Score=136.07 Aligned_cols=400 Identities=11% Similarity=0.109 Sum_probs=262.9
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh----HH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhH
Q psy14676 80 ILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ----LY-TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFA 154 (1827)
Q Consensus 80 il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~----~~-~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~ 154 (1827)
-++.++..+.++++.++..|+.++..+...-... .. ...++.|++.|..++++.++..++.+|+.++......-.
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3566788889999999999999998876432221 11 235788888887777789999999999999976544322
Q ss_pred HhH-HHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccch--HHHHHHHHHHhccCCCCCcccccccCCCCCCCC
Q psy14676 155 EHI-ERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHI--QSITELCLTYITYDPNYNYEDEEEGLGGEGGGE 231 (1827)
Q Consensus 155 p~l-~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l--~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~ 231 (1827)
..+ ...+|.+++.++.+++++|+.|..||..++...++ .+..+ ...++.++..+... +
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~-~r~~i~~~g~i~~Ll~lL~~~-~----------------- 217 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSA-FRDLVIKHGAIDPLLALLAVP-D----------------- 217 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHHHHHHTTCSS-C-----------------
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHH-HHHHHHHcCCcHHHHHHHhcc-c-----------------
Confidence 222 36889999999999999999999999888764432 11111 12456666655321 0
Q ss_pred CCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCc-hhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHH
Q psy14676 232 GMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDL-IGDMYRLVSPPLIARFKEREENVKSDIFHAYM 310 (1827)
Q Consensus 232 ~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~-l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~ 310 (1827)
.......+.+.++.+|..+.....+. -......++|.|...+++.+++|+..++.++.
T Consensus 218 ---------------------~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~ 276 (529)
T 3tpo_A 218 ---------------------LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 276 (529)
T ss_dssp ---------------------GGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred ---------------------hhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 01122356777888888877653321 12245678999999999999999999999998
Q ss_pred HHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccC-chhhHH
Q psy14676 311 ALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAP-SLPALI 389 (1827)
Q Consensus 311 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~-~l~~Ll 389 (1827)
.+..... .....+. -..++|.+.+.|.++++.++..+...++.++..-+..-.. .-...+
T Consensus 277 ~l~~~~~-----------------~~~~~v~--~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l 337 (529)
T 3tpo_A 277 YLTDGPN-----------------ERIEMVV--KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGAL 337 (529)
T ss_dssp HHHSSCH-----------------HHHHHHH--TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGG
T ss_pred Hhhhhhh-----------------hhHHHHH--hccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccH
Confidence 8873210 0111111 1234667778888999999999998888876432211000 001234
Q ss_pred HHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhH-Hhhhh
Q psy14676 390 PDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMY-RLVSP 468 (1827)
Q Consensus 390 p~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~-~~l~~ 468 (1827)
+.+..++.+ ....+|..|+.+|+.++..........+ ..++|
T Consensus 338 ~~L~~LL~~-------------------------------------~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~ 380 (529)
T 3tpo_A 338 AVFPSLLTN-------------------------------------PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 380 (529)
T ss_dssp GGHHHHTTC-------------------------------------SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHH
T ss_pred HHHHHHHcC-------------------------------------CCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHH
Confidence 555566621 2345899999999999864443333222 24788
Q ss_pred hHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHH
Q psy14676 469 PLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLA 548 (1827)
Q Consensus 469 ~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~ 548 (1827)
.++..+.+....+|..|..++..+...... .-+..+ ...++++
T Consensus 381 ~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~---------------------------~~~~~l----------~~~g~i~ 423 (529)
T 3tpo_A 381 FLVGVLSKADFKTQKAAAWAITNYTSGGTV---------------------------EQIVYL----------VHCGIIE 423 (529)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHSCH---------------------------HHHHHH----------HHTTCHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCCH---------------------------HHHHHH----------HHCcCHH
Confidence 999999999999999999888887643110 000111 1236788
Q ss_pred HHHHhhcCCCccccccchHHHHHHHhhhc-cccchhhHHHH-----HHHHHHHhhcchhhHHHHHHHhhh
Q psy14676 549 LLRELMTSSDKDFRFMATNDLMSELQKDS-IKLDDDSERKV-----VKMLLRLLEDKNGEVQNLAVKCLG 612 (1827)
Q Consensus 549 ~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~-~~~d~~~~~~i-----~~~l~~~l~D~~~eV~~~A~~~lg 612 (1827)
.|..++..+|++++..++..|...++.+- ......+...+ ++.|..+....+.+|+..|.+.|.
T Consensus 424 ~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie 493 (529)
T 3tpo_A 424 PLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 493 (529)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 89999999999999998888877765321 11111121112 455667778888999998877653
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.17 E-value=3.4e-09 Score=136.32 Aligned_cols=388 Identities=12% Similarity=0.115 Sum_probs=242.6
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHH
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVIL 81 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il 81 (1827)
|++.+.+--+..+++.+.+.=..+ +...-+-.-++|.|++.+.+..++.++.+|..+|+.++..-...... ...-.+
T Consensus 68 s~d~~~q~~a~~~~rklls~e~~p--pi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaI 145 (510)
T 3ul1_B 68 SNNLESQLQATQAARKLLSREKQP--PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAI 145 (510)
T ss_dssp SSCHHHHHHHHHHHHHHHTCSSCC--CHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCc--hHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCH
Confidence 444555555556666655432211 23333444589999999987668999999999999998643221111 112367
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHhhch---hHHH-HHHHHHHHhccCCC----CHHHHHHHHHHHHHHHHHhc-hh
Q psy14676 82 TALLPQLSSPRQAVRKRTIVALSHLVMSCNL---QLYT-KLIDFLLEGLTTNK----STSTNRTYIQCFAAICRQAG-HR 152 (1827)
Q Consensus 82 ~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~---~~~~-~l~~~ll~~L~~~~----~~~~r~~ai~~l~~la~~~~-~~ 152 (1827)
+.|+..|.+++..||+.|+.||++++...+. .... ..++.++..|.... .....+.++.++..+++... ..
T Consensus 146 p~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~ 225 (510)
T 3ul1_B 146 PAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP 225 (510)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchh
Confidence 8899999999999999999999999875432 1111 23566777665422 23467778888888887542 22
Q ss_pred hHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccc-hHHHHHHHHHHhccCCCCCcccccccCCCCCCCC
Q psy14676 153 FAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPH-IQSITELCLTYITYDPNYNYEDEEEGLGGEGGGE 231 (1827)
Q Consensus 153 ~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~-l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~ 231 (1827)
-......++|.+.+.+..++++++..|..++..+....+...... -..+++.+.+++..
T Consensus 226 ~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~-------------------- 285 (510)
T 3ul1_B 226 PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA-------------------- 285 (510)
T ss_dssp CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC--------------------
T ss_pred HHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC--------------------
Confidence 233567899999999999999999888887766654222111100 12345666665532
Q ss_pred CCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhH-HhhhHHHHhhcCCCCHhHHHHHHHHHH
Q psy14676 232 GMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMY-RLVSPPLIARFKEREENVKSDIFHAYM 310 (1827)
Q Consensus 232 ~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~-~~v~p~L~~~l~e~ee~VR~aa~~al~ 310 (1827)
.++.++..++.+|+.++.........+. ..++|.|...+++.++++|..++.+++
T Consensus 286 ------------------------~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~ 341 (510)
T 3ul1_B 286 ------------------------TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 341 (510)
T ss_dssp ------------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHH
T ss_pred ------------------------CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1247999999999998754332222222 246788888899999999999999999
Q ss_pred HHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCch--hhH
Q psy14676 311 ALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSL--PAL 388 (1827)
Q Consensus 311 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l--~~L 388 (1827)
.+..... .....+.. ..++|.++..|++.+.++|..|...+..++......--.++ ...
T Consensus 342 nl~a~~~-----------------~~~~~v~~--~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~ 402 (510)
T 3ul1_B 342 NITAGRQ-----------------DQIQQVVN--HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 402 (510)
T ss_dssp HHTTSCH-----------------HHHHHHHH--TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHcCcH-----------------HHHHHHHh--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCC
Confidence 8873210 01111111 24678888888999999999777777777654321100000 234
Q ss_pred HHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh-----hhhhhhH
Q psy14676 389 IPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR-----DLIGDMY 463 (1827)
Q Consensus 389 lp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~-----~~f~~~~ 463 (1827)
++.+..+|.. ..++++..++.+|..+++... ..+..+|
T Consensus 403 i~~L~~LL~~-------------------------------------~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~i 445 (510)
T 3ul1_B 403 IEPLMNLLSA-------------------------------------KDTKIIQVILDAISNIFQAAEKLGETEKLSIMI 445 (510)
T ss_dssp HHHHHHGGGC-------------------------------------SCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHhcC-------------------------------------CCHHHHHHHHHHHHHHHHHhHhccchHHHHHHH
Confidence 6667777731 235688999999998886432 1222233
Q ss_pred Hh--hhhhHHHhhcchhhhhHHHHHHHHHHH
Q psy14676 464 RL--VSPPLIARFKEREENVKSDIFHAYMAL 492 (1827)
Q Consensus 464 ~~--l~~~L~~~~~d~~~~Vr~~a~~~l~~L 492 (1827)
+. -+..+...-.+...+|++.|+..+...
T Consensus 446 ee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 446 EECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp HHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 32 233443433445678888888655444
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.17 E-value=6.2e-09 Score=134.61 Aligned_cols=388 Identities=12% Similarity=0.112 Sum_probs=243.3
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHH
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVIL 81 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il 81 (1827)
|++.+.+--+..+++.+.+.=..+ .....+..-++|.|++.+....++.++.+|+.+|..++..-...... ...-.+
T Consensus 87 s~d~~~q~~a~~~~rklLs~~~~~--~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gai 164 (529)
T 3tpo_A 87 SNNLESQLQATQAARKLLSREKQP--PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAI 164 (529)
T ss_dssp SSCHHHHHHHHHHHHHHHTSSSCC--CHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCCc--hHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 334444444555565554322221 23334556689999999977668999999999999998653321111 112367
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHhhch---hHHH-HHHHHHHHhccCCC----CHHHHHHHHHHHHHHHHHhc-hh
Q psy14676 82 TALLPQLSSPRQAVRKRTIVALSHLVMSCNL---QLYT-KLIDFLLEGLTTNK----STSTNRTYIQCFAAICRQAG-HR 152 (1827)
Q Consensus 82 ~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~---~~~~-~l~~~ll~~L~~~~----~~~~r~~ai~~l~~la~~~~-~~ 152 (1827)
+.|+..|.++++.||..|+.||++++...+. .... ..++.++..|.... .....+.++.++..+++... ..
T Consensus 165 p~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~ 244 (529)
T 3tpo_A 165 PAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP 244 (529)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchh
Confidence 8888999999999999999999999865432 1111 13567777775422 23467778888888887542 22
Q ss_pred hHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccc-hHHHHHHHHHHhccCCCCCcccccccCCCCCCCC
Q psy14676 153 FAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPH-IQSITELCLTYITYDPNYNYEDEEEGLGGEGGGE 231 (1827)
Q Consensus 153 ~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~-l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~ 231 (1827)
-......++|.+.+.+..++++++..|..++..+....+...... -..++|.+.+++..
T Consensus 245 ~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~-------------------- 304 (529)
T 3tpo_A 245 PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA-------------------- 304 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC--------------------
T ss_pred hHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC--------------------
Confidence 233467899999999999999999888888876664332111100 12345666665532
Q ss_pred CCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhh-HHhhhHHHHhhcCCCCHhHHHHHHHHHH
Q psy14676 232 GMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDM-YRLVSPPLIARFKEREENVKSDIFHAYM 310 (1827)
Q Consensus 232 ~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~-~~~v~p~L~~~l~e~ee~VR~aa~~al~ 310 (1827)
.++.++..++.+|+.++...+.....+ -..++|.|...+++.++++|..++.+++
T Consensus 305 ------------------------~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~ 360 (529)
T 3tpo_A 305 ------------------------TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 360 (529)
T ss_dssp ------------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHH
T ss_pred ------------------------CChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 124799999999999885433322222 2357888999999999999999999999
Q ss_pred HHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCch--hhH
Q psy14676 311 ALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSL--PAL 388 (1827)
Q Consensus 311 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l--~~L 388 (1827)
.+..... .....+.. ..++|.++..|++.+.++|..|...+..++......--.++ ..+
T Consensus 361 nl~~~~~-----------------~~~~~v~~--~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~ 421 (529)
T 3tpo_A 361 NITAGRQ-----------------DQIQQVVN--HGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGI 421 (529)
T ss_dssp HHHTSCH-----------------HHHHHHHH--TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTC
T ss_pred HHhcccH-----------------HHHHHHHh--cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcC
Confidence 8873210 01111111 23677888888899999999766677777654321100011 134
Q ss_pred HHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh-----hhhhhhH
Q psy14676 389 IPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR-----DLIGDMY 463 (1827)
Q Consensus 389 lp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~-----~~f~~~~ 463 (1827)
+|.+..+|.. ..++++..++.+|..+.+... ..+..+|
T Consensus 422 i~~L~~LL~~-------------------------------------~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~i 464 (529)
T 3tpo_A 422 IEPLMNLLSA-------------------------------------KDTKIIQVILDAISNIFQAAEKLGETEKLSIMI 464 (529)
T ss_dssp HHHHHHGGGC-------------------------------------SCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHhcC-------------------------------------CCHHHHHHHHHHHHHHHHHhHhccChHHHHHHH
Confidence 6677777731 235688899999988875432 1222223
Q ss_pred Hh--hhhhHHHhhcchhhhhHHHHHHHHHHH
Q psy14676 464 RL--VSPPLIARFKEREENVKSDIFHAYMAL 492 (1827)
Q Consensus 464 ~~--l~~~L~~~~~d~~~~Vr~~a~~~l~~L 492 (1827)
+. -+..+.....+...+|+..|+..+...
T Consensus 465 ee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 465 EECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp HHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 22 133333333444678888887655444
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.6e-09 Score=126.05 Aligned_cols=240 Identities=12% Similarity=0.047 Sum_probs=177.3
Q ss_pred CchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHH
Q psy14676 1034 NLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFV 1113 (1827)
Q Consensus 1034 ~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv 1113 (1827)
.-+|.+.+.|+++++..|..++..|+.+.. +..++.++..+.|+++.+|..|..+++.+.
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG--------------------QDAVRLAIEFCSDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC--------------------chHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 357888888888889999999998886531 246788889999999999999988887753
Q ss_pred HHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh--H
Q psy14676 1114 KVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT--R 1191 (1827)
Q Consensus 1114 ~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t--R 1191 (1827)
. .. ..+..+++.+...+. +|.+..||..|+.++|.+....+ .+.+..++.|...+++++. |
T Consensus 83 ~---------~~---~~~~~l~~~L~~~~~-~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR 145 (280)
T 1oyz_A 83 I---------CK---KCEDNVFNILNNMAL-NDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVR 145 (280)
T ss_dssp C---------CT---TTHHHHHHHHHHHHH-HCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHH
T ss_pred c---------cc---ccchHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHH
Confidence 1 01 123445454443322 48899999999999999764321 2345678888888876654 9
Q ss_pred HHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCC
Q psy14676 1192 LTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESD 1271 (1827)
Q Consensus 1192 ~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D 1271 (1827)
..|+.+++.+.. +..++.|...+++.+..+|..++.+|+.+-. -++ .+++.|..++.|.|
T Consensus 146 ~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----~~~----~~~~~L~~~l~d~~ 205 (280)
T 1oyz_A 146 RATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKY-----DNS----DIRDCFVEMLQDKN 205 (280)
T ss_dssp HHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC-----CCH----HHHHHHHHHTTCSC
T ss_pred HHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcc-----CcH----HHHHHHHHHhcCCC
Confidence 999999997753 2367888888899999999999999987621 122 35677778889999
Q ss_pred hhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhh
Q psy14676 1272 LHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQY 1351 (1827)
Q Consensus 1272 ~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~ 1351 (1827)
..++..++..|+.+ | .+..++.++..+.++ +||..|+.+||.+|. +..
T Consensus 206 ~~vR~~A~~aL~~~--------------------~-------~~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~---~~~ 253 (280)
T 1oyz_A 206 EEVRIEAIIGLSYR--------------------K-------DKRVLSVLCDELKKN--TVYDDIIEAAGELGD---KTL 253 (280)
T ss_dssp HHHHHHHHHHHHHT--------------------T-------CGGGHHHHHHHHTSS--SCCHHHHHHHHHHCC---GGG
T ss_pred HHHHHHHHHHHHHh--------------------C-------CHhhHHHHHHHhcCc--cHHHHHHHHHHhcCc---hhh
Confidence 99999888777643 2 144667778888774 499999999999986 467
Q ss_pred HHHHHHhhhcC
Q psy14676 1352 VPFVLKEIENQ 1362 (1827)
Q Consensus 1352 LP~Il~~i~~~ 1362 (1827)
+|.+.+.+++.
T Consensus 254 ~~~L~~~l~~~ 264 (280)
T 1oyz_A 254 LPVLDTMLYKF 264 (280)
T ss_dssp HHHHHHHHTTS
T ss_pred hHHHHHHHhcC
Confidence 88888877653
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.10 E-value=3.7e-09 Score=124.75 Aligned_cols=251 Identities=12% Similarity=0.117 Sum_probs=183.5
Q ss_pred hHHHHHHhhhhhh--hHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChH
Q psy14676 1177 CLPILLDRLRNEI--TRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTE 1254 (1827)
Q Consensus 1177 lL~~Ll~~L~~e~--tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~ 1254 (1827)
.++.|++.+++++ .|..|+++|+.+.. +..++.|...+++.+..+|..++.+|+.+.. .+.
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~------~~~ 86 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI------CKK 86 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC------CTT
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcc------ccc
Confidence 5667777777554 49999999998862 4567888889998899999999999986521 112
Q ss_pred hHHHHHHHhh-hhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHH
Q psy14676 1255 MLNKVTVELA-PLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVK 1333 (1827)
Q Consensus 1255 ~~~~ll~~L~-~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr 1333 (1827)
.+..+++.|. .+++|.|..++..++.+|+.+....+. ..+.+++.+...+.++++.||
T Consensus 87 ~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~---------------------~~~~~~~~L~~~l~d~~~~vR 145 (280)
T 1oyz_A 87 CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI---------------------YSPKIVEQSQITAFDKSTNVR 145 (280)
T ss_dssp THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG---------------------GHHHHHHHHHHHTTCSCHHHH
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc---------------------ccHHHHHHHHHHhhCCCHHHH
Confidence 2444555554 356889999999999999887653321 125688899999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHhhhc-CchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhH
Q psy14676 1334 SAASYTLGSIAVGNLQQYVPFVLKEIEN-QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGT 1412 (1827)
Q Consensus 1334 ~aAa~aLG~i~~~~l~~~LP~Il~~i~~-~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~v 1412 (1827)
.+|+.+||.++. +..+|.+.+.+.+ ++..++...++|+.+-. . -+.+++.|.+.+.+++..+
T Consensus 146 ~~a~~aL~~~~~---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---~-----------~~~~~~~L~~~l~d~~~~v 208 (280)
T 1oyz_A 146 RATAFAISVIND---KATIPLLINLLKDPNGDVRNWAAFAININKY---D-----------NSDIRDCFVEMLQDKNEEV 208 (280)
T ss_dssp HHHHHHHHTC------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC---C-----------CHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHhcCC---HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcc---C-----------cHHHHHHHHHHhcCCCHHH
Confidence 999999999875 3467888887766 34567778888877521 0 1344566666666778889
Q ss_pred HHHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhH
Q psy14676 1413 RNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDS 1492 (1827)
Q Consensus 1413 R~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~ 1492 (1827)
|..++.+||++. ....+|.|.+.+++++ +|..++.|+..+-..
T Consensus 209 R~~A~~aL~~~~---~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~-------------------------------- 251 (280)
T 1oyz_A 209 RIEAIIGLSYRK---DKRVLSVLCDELKKNT--VYDDIIEAAGELGDK-------------------------------- 251 (280)
T ss_dssp HHHHHHHHHHTT---CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCCG--------------------------------
T ss_pred HHHHHHHHHHhC---CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCch--------------------------------
Confidence 999999999987 4567899999998765 788888888776321
Q ss_pred HHHHHHHHHHhhcC-CchHHHHHHHHHhhh
Q psy14676 1493 ERKVVKMLLRLLED-KNGEVQNLAVKCLGP 1521 (1827)
Q Consensus 1493 ~~~l~~~ll~~l~D-~~~~Vr~~a~~~Lg~ 1521 (1827)
..+|.+..++++ +++.++..++..+.+
T Consensus 252 --~~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 252 --TLLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp --GGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred --hhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 134777777754 567777777777654
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=99.03 E-value=3.2e-06 Score=115.56 Aligned_cols=404 Identities=12% Similarity=0.103 Sum_probs=230.9
Q ss_pred HHHHHHHHHHHHHhhCCCCChh-hh--------hhH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc
Q psy14676 8 LRDISSIGLKTVISELPLGSNA-LA--------ANV---CRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS 75 (1827)
Q Consensus 8 ~Rdi~~~~Lktvi~~lp~~~~~-~~--------~~v---~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~ 75 (1827)
.+++.-.-|+.+..|+-..... +. ..+ ...+++.+...+++..++++...++.+|+..++-..... -
T Consensus 165 ~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~-i 243 (1073)
T 3gjx_A 165 LCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGY-I 243 (1073)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHH-H
T ss_pred HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHH-h
Confidence 3445555677777775432110 00 011 133445455556556678888888888887765442110 0
Q ss_pred hhHHHHHHH-hhhcCCCCHHHHHHHHHHHHHHHHh-hc--hhHHHHHHHHHHHhc----c------------CCCCHHHH
Q psy14676 76 FHFVILTAL-LPQLSSPRQAVRKRTIVALSHLVMS-CN--LQLYTKLIDFLLEGL----T------------TNKSTSTN 135 (1827)
Q Consensus 76 ~~~~il~~l-l~~L~~~~~~VRk~Ai~aL~~l~~~-~~--~~~~~~l~~~ll~~L----~------------~~~~~~~r 135 (1827)
....+++.+ ...|. ++.+|..|+.||..++.. .+ ++.+..++..++..+ . .+.+.+.-
T Consensus 244 ~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~ 321 (1073)
T 3gjx_A 244 FETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFI 321 (1073)
T ss_dssp HSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHH
T ss_pred ccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHH
Confidence 123577766 46664 578999999999998874 22 122333444433222 1 11223444
Q ss_pred HHHHHHHHHHHHHhch------hhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHh----CCC-------------
Q psy14676 136 RTYIQCFAAICRQAGH------RFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQR----CPK------------- 192 (1827)
Q Consensus 136 ~~ai~~l~~la~~~~~------~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~----~p~------------- 192 (1827)
+..+..+.++.+.... .+.+++...+..++.+...++.|+-+.|+..+-.|... .|.
T Consensus 322 ~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~ 401 (1073)
T 3gjx_A 322 QNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQH 401 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcccccccccccccccc
Confidence 5555666666554322 34556666677777777778888888887766555442 110
Q ss_pred --------ccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHH
Q psy14676 193 --------EITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAA 264 (1827)
Q Consensus 193 --------e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraA 264 (1827)
.+.|++..++..+..-|.+.++....++| ++|--.++-- |-.+-..+++.
T Consensus 402 ~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e---------------------~ge~~re~~~-d~~~~~ly~~m 459 (1073)
T 3gjx_A 402 FDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVEND---------------------QGEVVREFMK-DTDSINLYKNM 459 (1073)
T ss_dssp SCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECS---------------------SSCEEEEECS-SCHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcc---------------------cchHHHHHHh-hcchHHHHHHH
Confidence 14566777888888888775433211100 0000001000 01123456666
Q ss_pred HHHHHHHHHHcCCchhhhHHhhhHHHHhhcC--CCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHh
Q psy14676 265 AKCLEAIIATRRDLIGDMYRLVSPPLIARFK--EREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLST 342 (1827)
Q Consensus 265 ak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~--e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 342 (1827)
..||..+..-.+ ...+..+.+.|.+.+. +..|..+.+++.++|++..+.. ...-.+
T Consensus 460 rd~L~~lt~l~~---~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~-------------------~~~E~~ 517 (1073)
T 3gjx_A 460 RETLVYLTHLDY---VDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMH-------------------EEDEKR 517 (1073)
T ss_dssp HHHHHHHHHHCH---HHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSC-------------------HHHHHH
T ss_pred HHHHHHHhcCCH---HHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCC-------------------cccccc
Confidence 677765553322 2445566676766654 4569999999999998873211 012357
Q ss_pred hhHHHHHHHHHHhccC-----CHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcc
Q psy14676 343 QVPSLVKALQCQLREK-----SIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEE 417 (1827)
Q Consensus 343 ~lp~Iv~~l~~~L~d~-----~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ 417 (1827)
.+|.+++.++.....+ .+.++.+.+-++++..+.+-.. .++++.++..+.+.+.+
T Consensus 518 ~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h-~~~L~~vl~~L~~~m~~------------------- 577 (1073)
T 3gjx_A 518 FLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH-WKFLKTVVNKLFEFMHE------------------- 577 (1073)
T ss_dssp HHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHHHTTC-------------------
T ss_pred hHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhC-HHHHHHHHHHHHHHHhc-------------------
Confidence 8999999999876443 3445554433666666554321 23555555555555421
Q ss_pred cCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhh--------hhhHHhhhhhHHHhhcchhhhhHHHHHHHH
Q psy14676 418 EDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLI--------GDMYRLVSPPLIARFKEREENVKSDIFHAY 489 (1827)
Q Consensus 418 ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f--------~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l 489 (1827)
.+-.|+.+|+.++..++..+++.| .||++.++..+.+.+.+-.++-...-++.+
T Consensus 578 ------------------~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav 639 (1073)
T 3gjx_A 578 ------------------THDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAV 639 (1073)
T ss_dssp ------------------CSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHH
T ss_pred ------------------CCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 112399999999999999999666 368888887777766655544444455555
Q ss_pred HHHHhhc
Q psy14676 490 MALLKGT 496 (1827)
Q Consensus 490 ~~L~~~~ 496 (1827)
+-++...
T Consensus 640 ~~vi~~~ 646 (1073)
T 3gjx_A 640 GYMIGAQ 646 (1073)
T ss_dssp HHHHTTC
T ss_pred HHHHHhC
Confidence 5555443
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.6e-08 Score=133.11 Aligned_cols=268 Identities=14% Similarity=0.207 Sum_probs=216.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccC--CCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhH
Q psy14676 37 RITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGA--LLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQL 114 (1827)
Q Consensus 37 ~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~--~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~ 114 (1827)
.++..|..++.+..++ +.|+.+++.+++.++. .+.+|.-.+++.++..+.|-...||+.|..|+..++..+++..
T Consensus 54 ~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a 130 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA 130 (986)
T ss_dssp HHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG
T ss_pred hHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 5667777777543222 9999999999999865 4555666778999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCC-Cc
Q psy14676 115 YTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCP-KE 193 (1827)
Q Consensus 115 ~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p-~e 193 (1827)
...+++.++..|........+..++.+++.+++..++.++.++++++|.+...+.|...|+...|..++..++.... ++
T Consensus 131 ~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d 210 (986)
T 2iw3_A 131 IKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD 210 (986)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc
Confidence 88899999999966667889999999999999999999999999999999999999999999999998888888775 58
Q ss_pred cccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHH
Q psy14676 194 ITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIA 273 (1827)
Q Consensus 194 ~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~ 273 (1827)
+.||+|.+|..+- +|. + .-+|+..+..
T Consensus 211 ~~~~~~~~~~~~~-----~p~--------------------------------------------~----~~~~~~~l~~ 237 (986)
T 2iw3_A 211 IERFIPSLIQCIA-----DPT--------------------------------------------E----VPETVHLLGA 237 (986)
T ss_dssp TGGGHHHHHHHHH-----CTT--------------------------------------------H----HHHHHHHHTT
T ss_pred hhhhHHHHHHHhc-----Chh--------------------------------------------h----hHHHHHHhhc
Confidence 9999888887665 221 1 3456666666
Q ss_pred HcC--CchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHH
Q psy14676 274 TRR--DLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKAL 351 (1827)
Q Consensus 274 ~~~--~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l 351 (1827)
+.- +.-.|-+.-++|.|...|++|+-.++..+.-....+++-+. -..-..+.+|.++|.+
T Consensus 238 ~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~------------------~~~~~~~f~~~l~p~~ 299 (986)
T 2iw3_A 238 TTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVE------------------DPQVIAPFLGKLLPGL 299 (986)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCC------------------CHHHHHHHHTTTHHHH
T ss_pred CeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcC------------------CHHHHhhhhhhhhhHH
Confidence 643 45566788899999999999999997777766666665431 0245678899999999
Q ss_pred HHHhc-cCCHhHHHHHHHHHHHHHHhCc
Q psy14676 352 QCQLR-EKSIRTRQDCLALLRELVQTLP 378 (1827)
Q Consensus 352 ~~~L~-d~~~~vR~a~~~ll~~L~~vl~ 378 (1827)
.+-.. -.+|++|..|-..+..|..+..
T Consensus 300 ~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 300 KSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 88653 3679999998888888877643
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.8e-07 Score=120.76 Aligned_cols=469 Identities=11% Similarity=0.071 Sum_probs=280.2
Q ss_pred hhccccchhhHHHHHHhhhcccCCCC---chHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhh
Q psy14676 1009 CECQEEGTRNVVAECLGKLTLIDPSN---LLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYF 1085 (1827)
Q Consensus 1009 l~~~e~~vR~~a~e~Lg~L~~~~~~~---llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~ 1085 (1827)
+.+.....|+++.-.+..+....++. ++..+.+-++++++..|-.|+.+++.+.... +.+.
T Consensus 83 ~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e----------------~~~~ 146 (621)
T 2vgl_A 83 LSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSRE----------------MAEA 146 (621)
T ss_dssp GGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHH----------------HHHH
T ss_pred hcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHH----------------HHHH
Confidence 35556666777666666666555443 4667788889999999999999999764321 2678
Q ss_pred hhHHHHHhh--cCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q psy14676 1086 LLSPVIASV--GDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQII 1163 (1827)
Q Consensus 1086 Lip~l~~~l--~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~ 1163 (1827)
++|.+.+++ .|+.+.||..|+-++..+.+. .| +.. ++ ..+++.+...|. |.|+.|+..|+.++..+.
T Consensus 147 l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~-~p------~~~-~~-~~~~~~l~~lL~--d~d~~V~~~a~~~l~~i~ 215 (621)
T 2vgl_A 147 FAGEIPKILVAGDTMDSVKQSAALCLLRLYRT-SP------DLV-PM-GDWTSRVVHLLN--DQHLGVVTAATSLITTLA 215 (621)
T ss_dssp HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH-CG------GGC-CC-CSCHHHHHHHTT--CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-Ch------hhc-Cc-hhHHHHHHHHhC--CCCccHHHHHHHHHHHHH
Confidence 999999999 999999999999999998873 32 111 11 123333334454 889999999999999998
Q ss_pred HHhhhhhhhhhhhhHHHHHHhhhh--------------hhh-HHHHHHHHHHHhcCCCccccchhhhhhHhhhhhh----
Q psy14676 1164 CNLGDYLKSELPVCLPILLDRLRN--------------EIT-RLTTVKALTKIAASPLRIDLRPILTDGIPILGSF---- 1224 (1827)
Q Consensus 1164 ~~~g~~l~~~l~~lL~~Ll~~L~~--------------e~t-R~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~---- 1224 (1827)
..-+..+.+..+.++..|.+.+.. ..| +...++.++.++... ..+....+.+.+..+...
T Consensus 216 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~-d~~~~~~l~~~L~~il~~~~~~ 294 (621)
T 2vgl_A 216 QKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPE-DPAVRGRLTECLETILNKAQEP 294 (621)
T ss_dssp HHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCS-SHHHHHHHHHHHHHHHHHHHSC
T ss_pred HhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHhhccC
Confidence 876654445555555544433321 234 666666666554311 011122222233322221
Q ss_pred -----hcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHH
Q psy14676 1225 -----LRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAA 1299 (1827)
Q Consensus 1225 -----Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~ 1299 (1827)
++..+. -....++|...++.-.+ .++.....+..|..++.++|..++-.++..|..++...|..
T Consensus 295 ~ks~~l~~~n~-~~aVl~ea~~~i~~l~~---~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~------- 363 (621)
T 2vgl_A 295 PKSKKVQHSNA-KNAVLFEAISLIIHHDS---EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSH------- 363 (621)
T ss_dssp CSCSSHHHHHH-HHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH-------
T ss_pred cccccccccch-HHHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH-------
Confidence 111111 11233444444444321 34567778888889999999999999999999888755420
Q ss_pred hhhhhcccccCCCchhhHHHHHHHhcC-CCCHhHHHHHHHHHhhhh-hhhhhhhHHHHHHhhhc-CchhhHHHHHHHHHH
Q psy14676 1300 SILPQIGRHTDLTSVADLKQVILNAFT-PTSEEVKSAASYTLGSIA-VGNLQQYVPFVLKEIEN-QPKRQYLLLHSLKEI 1376 (1827)
Q Consensus 1300 ~~lgeiG~~~~~~~~~~l~~~~l~~~~-~~s~eVr~aAa~aLG~i~-~~~l~~~LP~Il~~i~~-~~~~q~~~l~aL~Ei 1376 (1827)
.........|+.++. +++..||..|...|-.++ ..|+..++..+++.+.+ +...+..+..+++.+
T Consensus 364 ------------~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~l 431 (621)
T 2vgl_A 364 ------------EAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAIL 431 (621)
T ss_dssp ------------HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 012345678899998 999999999998888765 45788888888887765 333344455666665
Q ss_pred HhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCC---cchHHHHHhhhcCCHHHHHHHHHH
Q psy14676 1377 ISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPS---NLLPRLQESLKSNSALMRTTVLTA 1453 (1827)
Q Consensus 1377 i~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~---~~lP~L~~~l~~~~~~~R~t~l~A 1453 (1827)
..+. .+-..|..+.|++.+....+-+..-+...+-.+....|+ ..+..|.+.+.++.. +..++.+
T Consensus 432 a~k~----------~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~--~~~li~~ 499 (621)
T 2vgl_A 432 AEKY----------AVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPAC--HENLVKV 499 (621)
T ss_dssp HHHH----------CSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSC--CHHHHHH
T ss_pred HHhc----------CCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccc--hHHHHHH
Confidence 4432 122244444444433222222333345555566555553 344556666655432 2334433
Q ss_pred HHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhH-HHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHH
Q psy14676 1454 VKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDS-ERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVE 1532 (1827)
Q Consensus 1454 lk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~-~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~ 1532 (1827)
.-+++.+-+ +.+ .. .++. ...++..+...+.+..+.||....-++.++..+.+. ..
T Consensus 500 ~~wilGEy~----~~~------------~~-----~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~--~~ 556 (621)
T 2vgl_A 500 GGYILGEFG----NLI------------AG-----DPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE--VK 556 (621)
T ss_dssp HHHHHHHHT----HHH------------HS-----STTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG--GH
T ss_pred HHHHhcchH----HHh------------cc-----cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH--HH
Confidence 334443211 000 00 0000 013455666667788899999999999999865542 33
Q ss_pred HHHHHHHhhhcc--cccccccCCccchhHHHHHHHhhhhc
Q psy14676 1533 TIVDALCSNMVS--DKEQLRDISSIGLKTVISVVYCLGDR 1570 (1827)
Q Consensus 1533 ~~v~~l~~~l~~--~~~~~~~~~~~~vRr~Al~~l~s~a~ 1570 (1827)
+.+..++..... + +|.|||--|..-++-...
T Consensus 557 ~~i~~~l~~~~~~~~-------~d~evrdRA~~y~~Ll~~ 589 (621)
T 2vgl_A 557 ATIQDVLRSDSQLKN-------ADVELQQRAVEYLRLSTV 589 (621)
T ss_dssp HHHHHHHSSHHHHSC-------SSHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCC-------CCHHHHHHHHHHHHHHcc
Confidence 445555543333 3 345999888877666543
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=98.98 E-value=4.9e-05 Score=104.00 Aligned_cols=499 Identities=10% Similarity=0.077 Sum_probs=258.1
Q ss_pred chHHHHHHHHHHHHHHHhh----CCCCChhhhhhHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHhhccCCCCc
Q psy14676 4 DKEQLRDISSIGLKTVISE----LPLGSNALAANVCRRITGKLSTAIEK----QEDVSVQLEALDILSDLLSRFGALLPS 75 (1827)
Q Consensus 4 ~~~~~Rdi~~~~Lktvi~~----lp~~~~~~~~~v~~~L~P~Ll~~l~~----~~~~~v~~~al~iL~~l~~~~~~~l~~ 75 (1827)
...++|=.+...|+..|.. +|.. ....++..|+..+.....+ +.++.++.....+++.++.+.-|.
T Consensus 73 ~~~~vR~fAa~~L~~~I~~~W~~L~~e---~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~--- 146 (1073)
T 3gjx_A 73 QNMNTKYYGLQILENVIKTRWKILPRN---QCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK--- 146 (1073)
T ss_dssp CSHHHHHHHHHHHHHHHHHTGGGSCHH---HHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT---
T ss_pred CCHHHHHHHHHHHHHHHHhhhhhCCHH---HHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh---
Confidence 3568999999999999883 6542 3345566666655543322 235778888889999998875442
Q ss_pred hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhch--------h-------HH----HHHHHHHHHhccCCCCHHHHH
Q psy14676 76 FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNL--------Q-------LY----TKLIDFLLEGLTTNKSTSTNR 136 (1827)
Q Consensus 76 ~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~--------~-------~~----~~l~~~ll~~L~~~~~~~~r~ 136 (1827)
.++.+++-+++.+++ ++..+......|..+.+.+.+ . .+ ..++.-+...|....++.+..
T Consensus 147 ~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~ 225 (1073)
T 3gjx_A 147 HWPTFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVH 225 (1073)
T ss_dssp TCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHH
T ss_pred hccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 345555555555532 345566677777777765321 0 11 112222222233445677888
Q ss_pred HHHHHHHHHHHHhchhh-HHhHHHHHHHH-HhhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHH----HHhc
Q psy14676 137 TYIQCFAAICRQAGHRF-AEHIERVMPLI-LKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCL----TYIT 210 (1827)
Q Consensus 137 ~ai~~l~~la~~~~~~~-~p~l~~i~p~l-~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll----~~l~ 210 (1827)
.++++++....-.+-.. .. ..+++.+ ..++ .++++|+.|+.++-.++..-..+....+..+...++ +.+.
T Consensus 226 ~~L~~L~~~~sWI~i~~i~~--~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp 301 (1073)
T 3gjx_A 226 ATLETLLRFLNWIPLGYIFE--TKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLP 301 (1073)
T ss_dssp HHHHHHHHHTTTSCTHHHHS--SSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcCHHHhcc--chHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 88899999887765322 11 4577776 4666 468899999888877666421122222222332222 2221
Q ss_pred cCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHH-------HHHHHcCCchhhhH
Q psy14676 211 YDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLE-------AIIATRRDLIGDMY 283 (1827)
Q Consensus 211 ~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~-------~l~~~~~~~l~~~~ 283 (1827)
..++. .. .. ..++ ++|.+ .++ +-+..+. .++...|+ +.+++
T Consensus 302 ~~~~l--~~--~y--------~~~~---------------~~d~e---~~~-~l~~~f~~~~e~~~~lIe~~p~-~~~~l 349 (1073)
T 3gjx_A 302 LNTNI--RL--AY--------SNGK---------------DDEQN---FIQ-NLSLFLCTFLKEHGQLLEKRLN-LREAL 349 (1073)
T ss_dssp TTSCH--HH--HH--------HTCC---------------TTHHH---HHH-HHHHHHHHHHHHHHHHHHHCGG-GHHHH
T ss_pred CchhH--HH--HH--------hccc---------------hhhHH---HHH-HHHHHHHHHHHHHHHHHhcCcc-chHHH
Confidence 11111 00 00 0000 00000 122 1222222 23333232 33455
Q ss_pred HhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCC-----CCCCCCCCCCC-CCChHhhHHhhhHHHHHHHHHHhcc
Q psy14676 284 RLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSP-----LTPSDPNQMDQ-EDSPLCLLSTQVPSLVKALQCQLRE 357 (1827)
Q Consensus 284 ~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~-----~~~~~~~~~~~-~~~~~~~l~~~lp~Iv~~l~~~L~d 357 (1827)
..++.+|+.....++.++=.-.+.-|..+.+....... .|.. ..+..+ -...+....+.+..++..++..|.-
T Consensus 350 ~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~-~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~ 428 (1073)
T 3gjx_A 350 MEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLL-SGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAK 428 (1073)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCT-TSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccc-cccccccchhHHHHHHHHHHHHHHHHHHhcCC
Confidence 55666677766777888888888888777765442210 0000 000000 0112234667777778888887742
Q ss_pred CCH----------hHHH--------HHHHHHHHH----HHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCC
Q psy14676 358 KSI----------RTRQ--------DCLALLREL----VQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDT 415 (1827)
Q Consensus 358 ~~~----------~vR~--------a~~~ll~~L----~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~ 415 (1827)
+.. .+|+ .++..++.. ....+. ..+..+++.+.+.+..
T Consensus 429 P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~---~~~~i~~~~l~~~~~~----------------- 488 (1073)
T 3gjx_A 429 PEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYV---DTEIIMTKKLQNQVNG----------------- 488 (1073)
T ss_dssp SCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHTS-----------------
T ss_pred CccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHhcC-----------------
Confidence 220 1111 222222222 222221 1123333333333210
Q ss_pred cccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhh-hhhhHHhhhhhHHHhhcch-----hhhhHHHHHHHH
Q psy14676 416 EEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDL-IGDMYRLVSPPLIARFKER-----EENVKSDIFHAY 489 (1827)
Q Consensus 416 e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~-f~~~~~~l~~~L~~~~~d~-----~~~Vr~~a~~~l 489 (1827)
+..+|..+.+++=+++.++++..+. =.++++.+++.|++..... ...||....=++
T Consensus 489 ------------------~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vl 550 (1073)
T 3gjx_A 489 ------------------TEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIV 550 (1073)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHH
T ss_pred ------------------CCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHH
Confidence 1247999999999999998766643 3478888888887655322 111222111111
Q ss_pred HHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHH
Q psy14676 490 MALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDL 569 (1827)
Q Consensus 490 ~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl 569 (1827)
++ ..+-+..
T Consensus 551 gr---------------------------------------Y~~wl~~-------------------------------- 559 (1073)
T 3gjx_A 551 GQ---------------------------------------YPRFLRA-------------------------------- 559 (1073)
T ss_dssp HH---------------------------------------CHHHHHH--------------------------------
T ss_pred hh---------------------------------------hHHHHHh--------------------------------
Confidence 11 1111110
Q ss_pred HHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhh
Q psy14676 570 MSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQ 649 (1827)
Q Consensus 570 ~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~ 649 (1827)
.+.....++..|++.+.|.+.+|+..|..++..+...++..-.....-+..||++.++..+.+...+=+
T Consensus 560 -----------h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~ 628 (1073)
T 3gjx_A 560 -----------HWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQ 628 (1073)
T ss_dssp -----------CHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCC
T ss_pred -----------CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcC
Confidence 012344566677788888888999999888888877777532111112345677766666665554433
Q ss_pred hhhhhhhHHHHHHHHhh
Q psy14676 650 RALKLSTLLLLDTLLVN 666 (1827)
Q Consensus 650 ~~lk~~~l~~l~~l~~~ 666 (1827)
..-...-..++..++..
T Consensus 629 ~~~~~~lyeav~~vi~~ 645 (1073)
T 3gjx_A 629 PQQVHTFYEAVGYMIGA 645 (1073)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33333333444444433
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.4e-08 Score=110.26 Aligned_cols=188 Identities=18% Similarity=0.184 Sum_probs=138.0
Q ss_pred hhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhcC-chhhHHHHHHHHHHHhhccccccchhhhhch
Q psy14676 1315 ADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIENQ-PKRQYLLLHSLKEIISWQSTSTSGVAQLQQF 1393 (1827)
Q Consensus 1315 ~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~~-~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~ 1393 (1827)
+..++.+++.+.+++..+|..|+.+||.++. +..+|.+++.+.+. +..+...+++|+++-. . ..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~---~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---------~---~~ 82 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD---ERAVEPLIKALKDEDAWVRRAAADALGQIGD---------E---RA 82 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC---------G---GG
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------H---HH
Confidence 5688899999999999999999999999876 35677778877663 4466666777766521 1 12
Q ss_pred HHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHH
Q psy14676 1394 VPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMA 1473 (1827)
Q Consensus 1394 ~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a 1473 (1827)
++.|.+.+.+++..+|..++.+||++.. ...+|.|.+.++++++.+|..++.++..+-..
T Consensus 83 ----~~~L~~~l~~~~~~vr~~a~~aL~~~~~---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------------- 142 (211)
T 3ltm_A 83 ----VEPLIKALKDEDGWVRQSAAVALGQIGD---ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE------------- 142 (211)
T ss_dssp ----HHHHHHHTTCSSHHHHHHHHHHHHHHCC---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-------------
T ss_pred ----HHHHHHHHcCCCHHHHHHHHHHHHHhCc---HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-------------
Confidence 3444555567788899999999999863 45779999999999999999999999887321
Q ss_pred hhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCC
Q psy14676 1474 TNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDIS 1553 (1827)
Q Consensus 1474 ~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~ 1553 (1827)
..++.+..+++|+++.||..|+.+||.+.. ...+..+...+..+
T Consensus 143 ---------------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~-------- 186 (211)
T 3ltm_A 143 ---------------------RAVEPLIKALKDEDGWVRQSAADALGEIGG-------ERVRAAMEKLAETG-------- 186 (211)
T ss_dssp ---------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------HHHHHHHHHHHHHC--------
T ss_pred ---------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------hhHHHHHHHHHhCC--------
Confidence 134788899999999999999999999863 22233333333322
Q ss_pred ccchhHHHHHHHhhhhccCC
Q psy14676 1554 SIGLKTVISVVYCLGDRNSS 1573 (1827)
Q Consensus 1554 ~~~vRr~Al~~l~s~a~~~p 1573 (1827)
+..||+.|..+|....++.+
T Consensus 187 ~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 187 TGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp CHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHhcCCCCC
Confidence 33899999999988876544
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.84 E-value=6.5e-08 Score=108.83 Aligned_cols=184 Identities=16% Similarity=0.135 Sum_probs=140.5
Q ss_pred HHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHH
Q psy14676 1259 VTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASY 1338 (1827)
Q Consensus 1259 ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~ 1338 (1827)
.++.|...+.+.|..++..++..|+.+.. +..++.+++.+.++++.||..|+.
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~---------------------------~~~~~~L~~~l~~~~~~vr~~a~~ 72 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD---------------------------ERAVEPLIKALKDEDAWVRRAAAD 72 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------------------------GGGHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------------------------ccHHHHHHHHHcCCCHHHHHHHHH
Confidence 34556677889999999998887764311 356788889999999999999999
Q ss_pred HHhhhhhhhhhhhHHHHHHhhhc-CchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHH
Q psy14676 1339 TLGSIAVGNLQQYVPFVLKEIEN-QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVA 1417 (1827)
Q Consensus 1339 aLG~i~~~~l~~~LP~Il~~i~~-~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aA 1417 (1827)
+||.++. +..+|.+++.+.+ ++..|...+++|+.+-. . .. ++.|.+.+.+++..+|..++
T Consensus 73 aL~~~~~---~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---------~---~~----~~~L~~~l~d~~~~vr~~a~ 133 (211)
T 3ltm_A 73 ALGQIGD---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD---------E---RA----VEPLIKALKDEDWFVRIAAA 133 (211)
T ss_dssp HHHHHCC---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------G---GG----HHHHHHHTTCSSHHHHHHHH
T ss_pred HHHhhCC---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------H---HH----HHHHHHHHhCCCHHHHHHHH
Confidence 9999875 3467888888876 34567777777776521 1 12 34445555677888999999
Q ss_pred HHHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHH
Q psy14676 1418 ECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVV 1497 (1827)
Q Consensus 1418 ecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~ 1497 (1827)
.+||++. ....+|.|.++++++++.+|..++.+|..+-. + ..+
T Consensus 134 ~aL~~~~---~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~---------------------------~~~ 176 (211)
T 3ltm_A 134 FALGEIG---DERAVEPLIKALKDEDGWVRQSAADALGEIGG-------E---------------------------RVR 176 (211)
T ss_dssp HHHHHHC---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------H---------------------------HHH
T ss_pred HHHHHcC---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------h---------------------------hHH
Confidence 9999985 35678999999999999999999999998742 1 345
Q ss_pred HHHHHhhcCCchHHHHHHHHHhhhhhhh
Q psy14676 1498 KMLLRLLEDKNGEVQNLAVKCLGPLVNK 1525 (1827)
Q Consensus 1498 ~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~ 1525 (1827)
+.+..+++|+++.||..|..+|+.+...
T Consensus 177 ~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 177 AAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 8888999999999999999999998753
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.84 E-value=8e-08 Score=107.21 Aligned_cols=184 Identities=16% Similarity=0.133 Sum_probs=142.7
Q ss_pred HHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHH
Q psy14676 1258 KVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAAS 1337 (1827)
Q Consensus 1258 ~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa 1337 (1827)
...+.+..++.+.|..++..++..|+.+.. +...+.+++.+.++++.||..|+
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~---------------------------~~~~~~L~~~l~~~~~~vr~~a~ 66 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD---------------------------ERAVEPLIKALKDEDAWVRRAAA 66 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC---------------------------GGGHHHHHHHTTCSSHHHHHHHH
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC---------------------------hhHHHHHHHHHcCCCHHHHHHHH
Confidence 455666789999999999998888764321 34667888999999999999999
Q ss_pred HHHhhhhhhhhhhhHHHHHHhhhc-CchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHH
Q psy14676 1338 YTLGSIAVGNLQQYVPFVLKEIEN-QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVV 1416 (1827)
Q Consensus 1338 ~aLG~i~~~~l~~~LP~Il~~i~~-~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~a 1416 (1827)
.+||.++.. ..+|.+.+.+.+ ++..|...+++|+.+-. . .. ++.|.+.+.+++..+|..+
T Consensus 67 ~~L~~~~~~---~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------~---~~----~~~L~~~l~d~~~~vr~~a 127 (201)
T 3ltj_A 67 DALGQIGDE---RAVEPLIKALKDEDGWVRQSAAVALGQIGD---------E---RA----VEPLIKALKDEDWFVRIAA 127 (201)
T ss_dssp HHHHHHCCG---GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------G---GG----HHHHHHHTTCSSHHHHHHH
T ss_pred HHHHhhCCH---HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------H---HH----HHHHHHHHcCCCHHHHHHH
Confidence 999998753 467788888776 34567777777776521 1 12 3444555567778899999
Q ss_pred HHHHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHH
Q psy14676 1417 AECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKV 1496 (1827)
Q Consensus 1417 AecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l 1496 (1827)
+.+||++.. ...+|.|.+.++++++.+|..++.++..+-. + ..
T Consensus 128 ~~aL~~~~~---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-------~---------------------------~~ 170 (201)
T 3ltj_A 128 AFALGEIGD---ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------E---------------------------RV 170 (201)
T ss_dssp HHHHHHHTC---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------H---------------------------HH
T ss_pred HHHHHHhCC---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------h---------------------------hH
Confidence 999999863 5678999999999999999999999988731 1 34
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhhhhhh
Q psy14676 1497 VKMLLRLLEDKNGEVQNLAVKCLGPLVN 1524 (1827)
Q Consensus 1497 ~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~ 1524 (1827)
++.+..+++|+++.||..|..+|+.+-.
T Consensus 171 ~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 171 RAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 5888889999999999999999998864
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.4e-05 Score=103.77 Aligned_cols=536 Identities=11% Similarity=0.133 Sum_probs=300.2
Q ss_pred HHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCC
Q psy14676 851 QLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPK 930 (1827)
Q Consensus 851 ~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~ 930 (1827)
+.-..+...+...+.-..++ ....+++++-.+...++..|.. +.-++..+.- +-+.++||-.++-+.-.+.+.+++
T Consensus 128 ~~~~~ll~~~~~~~~~~~~~-~~~~~l~~~~~l~~~~~~~~~~-~~~l~~~~~~--~~~~~~~~~~~l~i~~~~~~~~~~ 203 (778)
T 3opb_A 128 DATIALLNELQIRIHYGEDT-HVTYLLSIILQLLNKFKYNFKE-VRFLVKELIL--RISEDEVKSMMLIIFAELQSSFQK 203 (778)
T ss_dssp GGGHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCCCSTT-TTHHHHHHHT--TTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCc-chhHHHHHHHHHHHHcCccccc-hhhHHHHhcc--ccChhhhHHHHHHHHHHHHHhCch
Confidence 33344455554443322233 5688999999999998887777 5555544443 335678888877776665554443
Q ss_pred ccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhh
Q psy14676 931 EITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCE 1010 (1827)
Q Consensus 931 ~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~ 1010 (1827)
+..-.+..+++ .+++.. .+...-++....+ +.+.++=|+.|.+...+|..
T Consensus 204 ~~~~~~~~~~~-----------~l~~e~----------~~~~~~~~~~~~~-------~~l~~lfPi~p~~~s~lfl~-- 253 (778)
T 3opb_A 204 DFDKAVVDFMS-----------SLIVEA----------EIDVGNDPLSIIV-------KTLSELYPSLTTLCSEIFLT-- 253 (778)
T ss_dssp HHHHHHHHHHH-----------HHHHHH----------HHTCSSCHHHHHH-------HHHHHHTTTTHHHHHHHHST--
T ss_pred HHHHHHHHHHH-----------HHHHhh----------ccCCCCccHHHHH-------HHHHHHhcCCHHHHHHHHcc--
Confidence 32222221110 000000 0000000000111 23455667777777777633
Q ss_pred ccccchhhHHHHHHhhhcccCCCCchHHHHHHhccC-ChhhHHHHHHHHHHH--HHhccccccccccchhhhhhhhhhhh
Q psy14676 1011 CQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSN-SALMRTTHQSNQTFN--VIIQRNDIHNHNEETSFIYSFYYFLL 1087 (1827)
Q Consensus 1011 ~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~-~~~~R~~a~~~L~~l--~~~~~~~l~~~~~~~~~~~~~l~~Li 1087 (1827)
+.+.|.+.+.+++. +.....+++.+|... ...++..+..| .+
T Consensus 254 ----------------------e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~-------------~~ 298 (778)
T 3opb_A 254 ----------------------KGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITEN-------------YL 298 (778)
T ss_dssp ----------------------TTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHH-------------HH
T ss_pred ----------------------ccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHh-------------HH
Confidence 55677777777543 344556666666633 22333333333 44
Q ss_pred HHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhh
Q psy14676 1088 SPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLG 1167 (1827)
Q Consensus 1088 p~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g 1167 (1827)
+.+.+.+++ ..++..|+-++..+...-.+ . ..-+.++.+.+...+. +.+.+.++.|+++|+.+-- .
T Consensus 299 ~~L~~~l~~--~~ir~lAavvL~KL~~~~~~------~--~~si~~La~~~~~~L~--~~~~~~~~~AvEgLaYLSl--~ 364 (778)
T 3opb_A 299 QLLERSLNV--EDVQIYSALVLVKTWSFTKL------T--CINLKQLSEIFINAIS--RRIVPKVEMSVEALAYLSL--K 364 (778)
T ss_dssp HHHHHHTTS--GGGHHHHHHHHHHHTGGGTC------T--TCCHHHHHHHHHHHTT--TCCHHHHHHHHHHHHHHTT--S
T ss_pred HHHHHHhcc--HHHHHHHHHHHHHHhcCCCC------C--cCcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHhC--C
Confidence 555555654 46666565554444332111 1 1235667777777776 3344559999999998742 2
Q ss_pred hhhhh---hhhhhHHHHHHhhhh-hh--hHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcch--------hHHHH
Q psy14676 1168 DYLKS---ELPVCLPILLDRLRN-EI--TRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKN--------QRALK 1233 (1827)
Q Consensus 1168 ~~l~~---~l~~lL~~Ll~~L~~-e~--tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~--------~r~lR 1233 (1827)
..+.. .-+.+++.|++.+++ +. .-..++..++.+..+....... ..-+..|..|..-. ..-..
T Consensus 365 ~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e---~~~l~~Lk~~A~~~~p~~~~~d~~~~~ 441 (778)
T 3opb_A 365 ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXX---XXXXXXXXXXXXXXXPAADKVGAEKAA 441 (778)
T ss_dssp SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCC---CC------------------CCTHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchh---hhhhhhhhhhccccCcccCcccccccc
Confidence 22222 225578888888875 22 2566666666666543221110 01122222222100 00000
Q ss_pred HHHHHH-HHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCC
Q psy14676 1234 LSTLLL-LDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLT 1312 (1827)
Q Consensus 1234 ~~al~a-L~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~ 1312 (1827)
..-+.. -...+. . .+++|.|..+++..+..++..+..+|..++.. ++.- +.+ +
T Consensus 442 ~~~v~~~~~~~l~------e----aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R---------~~l---v--- 495 (778)
T 3opb_A 442 KEDILLFNEKYIL------R----TELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFI---------PQL---A--- 495 (778)
T ss_dssp HHHHHHHHHHHTT------T----TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGH---------HHH---H---
T ss_pred hHHHHHHHHHHHH------H----CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHH---------HHH---H---
Confidence 011111 001111 1 13778888889889999999999999998753 2110 011 1
Q ss_pred chhhHHHHHHHhcCCCCHh---HHHHHHHHHhhhhhh-h---------hhhhHHHHHHhhhcCc---------------h
Q psy14676 1313 SVADLKQVILNAFTPTSEE---VKSAASYTLGSIAVG-N---------LQQYVPFVLKEIENQP---------------K 1364 (1827)
Q Consensus 1313 ~~~~l~~~~l~~~~~~s~e---Vr~aAa~aLG~i~~~-~---------l~~~LP~Il~~i~~~~---------------~ 1364 (1827)
....++.++..+.+.++. +|..|+.||.++... | .-.-+|.+++.+...+ .
T Consensus 496 -qqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l 574 (778)
T 3opb_A 496 -QQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLT 574 (778)
T ss_dssp -HTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHH
T ss_pred -HCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHH
Confidence 123567777778776554 899999999996532 1 1135578888776211 1
Q ss_pred hhHHHHHHHHHHHhhccccccchhhhhc-hHH--HHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCC----cc------
Q psy14676 1365 RQYLLLHSLKEIISWQSTSTSGVAQLQQ-FVP--AIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPS----NL------ 1431 (1827)
Q Consensus 1365 ~q~~~l~aL~Eii~~~~~s~~g~~~L~~-~~~--~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~----~~------ 1431 (1827)
.++-.+.||.-+......+ ++.++. .+. ..|+.+...+.++.+.+|..|++|+..|+. +|. .+
T Consensus 575 ~~feAL~ALTNLAs~~~n~---~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~ 650 (778)
T 3opb_A 575 DNYEALLALTNLASSETSD---GEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNLENP 650 (778)
T ss_dssp HHHHHHHHHHHHHHCCSHH---HHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSH
T ss_pred HHHHHHHHHHHHhcCCccc---chHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCc
Confidence 2667788888776521000 123433 333 478888888877788999999999999996 443 22
Q ss_pred -----hHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHH-HHHHHHHHHhhc
Q psy14676 1432 -----LPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSE-RKVVKMLLRLLE 1505 (1827)
Q Consensus 1432 -----lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~-~~l~~~ll~~l~ 1505 (1827)
++.|..++.+++...|..+.-||..+.+.. +... +.+ +. ...++.++.+++
T Consensus 651 ~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~-----~~ia----~~l--------------l~~~~gi~~Ll~lL~ 707 (778)
T 3opb_A 651 QSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI-----PLIA----KEL--------------LTKKELIENAIQVFA 707 (778)
T ss_dssp HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC-----HHHH----HHH--------------TTCHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-----hHHH----HHH--------------HHccccHHHHHHHHh
Confidence 556888899999999999999998875432 1110 000 01 246678888888
Q ss_pred C--CchHHHHHHHHHhhhhhhhh
Q psy14676 1506 D--KNGEVQNLAVKCLGPLVNKV 1526 (1827)
Q Consensus 1506 D--~~~~Vr~~a~~~Lg~L~~~l 1526 (1827)
+ +++++|.+++.++..|+...
T Consensus 708 ~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 708 DQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTC
T ss_pred ccCCCHHHHHHHHHHHHHHHHhh
Confidence 8 89999999999999999743
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.4e-07 Score=105.25 Aligned_cols=185 Identities=18% Similarity=0.170 Sum_probs=138.1
Q ss_pred chhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhc-CchhhHHHHHHHHHHHhhccccccchhhhh
Q psy14676 1313 SVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIEN-QPKRQYLLLHSLKEIISWQSTSTSGVAQLQ 1391 (1827)
Q Consensus 1313 ~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~-~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~ 1391 (1827)
+.+...+.+++.+.++++.+|..|+.+||.++. +..+|.+++.+.+ ++..+...+++|+.+-. .
T Consensus 11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~---~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~---- 75 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD---ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------E---- 75 (201)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------G----
T ss_pred cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------H----
Confidence 346789999999999999999999999999875 3467778887765 34456666677766521 1
Q ss_pred chHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHH
Q psy14676 1392 QFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRF 1471 (1827)
Q Consensus 1392 ~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~ 1471 (1827)
.. .+.|.+.+.+++..+|..++.+||++.. ...+|.|.+.++++++.+|..++.++..+-..
T Consensus 76 ~~----~~~L~~~l~d~~~~vr~~a~~aL~~~~~---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------- 137 (201)
T 3ltj_A 76 RA----VEPLIKALKDEDGWVRQSAAVALGQIGD---ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE----------- 137 (201)
T ss_dssp GG----HHHHHHHTTCSSHHHHHHHHHHHHHHCC---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-----------
T ss_pred HH----HHHHHHHHcCCCHHHHHHHHHHHHHhCc---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-----------
Confidence 12 3444555567788899999999999853 45789999999999999999999999887421
Q ss_pred HHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhccccccccc
Q psy14676 1472 MATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRD 1551 (1827)
Q Consensus 1472 ~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~ 1551 (1827)
..++.+..+++|+++.||..|+.+||.+.. . ..+..+...+..
T Consensus 138 -----------------------~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----~---~~~~~L~~~l~d------- 180 (201)
T 3ltj_A 138 -----------------------RAVEPLIKALKDEDGWVRQSAADALGEIGG----E---RVRAAMEKLAET------- 180 (201)
T ss_dssp -----------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----H---HHHHHHHHHHHH-------
T ss_pred -----------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----h---hHHHHHHHHHhC-------
Confidence 134788899999999999999999999852 2 222233332222
Q ss_pred CCccchhHHHHHHHhhh
Q psy14676 1552 ISSIGLKTVISVVYCLG 1568 (1827)
Q Consensus 1552 ~~~~~vRr~Al~~l~s~ 1568 (1827)
++..||..|..+|...
T Consensus 181 -~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 181 -GTGFARKVAVNYLETH 196 (201)
T ss_dssp -CCHHHHHHHHHHHHHC
T ss_pred -CCHHHHHHHHHHHHHH
Confidence 2348999999998654
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.1e-07 Score=107.14 Aligned_cols=237 Identities=14% Similarity=0.144 Sum_probs=167.9
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh---HH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHH
Q psy14676 80 ILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ---LY-TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAE 155 (1827)
Q Consensus 80 il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~---~~-~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p 155 (1827)
.++.+++.|.++++.+|..|+.+|..++...++. .. ...++.++..|.+ ++..++..++.+++.++...+..-..
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 3677889999999999999999999998865422 11 1356777777765 45889999999999998653322111
Q ss_pred hH-HHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccch-HHHHHHHHHHhccCCCCCcccccccCCCCCCCCCC
Q psy14676 156 HI-ERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHI-QSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGM 233 (1827)
Q Consensus 156 ~l-~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l-~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~ 233 (1827)
.. ...+|.+++.++++++++|+.|..++..+....++...... ...++.+++.+..
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~---------------------- 139 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS---------------------- 139 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC----------------------
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC----------------------
Confidence 11 35788999999888999999998888877753332111111 2367777766531
Q ss_pred CCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhh-HHhhhHHHHhhcCCCCHhHHHHHHHHHHHH
Q psy14676 234 DTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDM-YRLVSPPLIARFKEREENVKSDIFHAYMAL 312 (1827)
Q Consensus 234 d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~-~~~v~p~L~~~l~e~ee~VR~aa~~al~~l 312 (1827)
.++.+|+.++.+|..++...++....+ -..++|.|+..+++.++.+|..++.+++.+
T Consensus 140 ----------------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 197 (252)
T 4hxt_A 140 ----------------------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 197 (252)
T ss_dssp ----------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 125799999999999986544322222 235789999999999999999999999988
Q ss_pred HhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCccc
Q psy14676 313 LKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGC 380 (1827)
Q Consensus 313 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~ 380 (1827)
.... ......+.. ..+++.+.+.++++++++|..+...++.+....++.
T Consensus 198 ~~~~-----------------~~~~~~l~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 198 ASGP-----------------TSAIKAIVD--AGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp TTSB-----------------HHHHHHHHH--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HcCC-----------------HHHHHHHHH--CCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 7421 001111111 346788888899999999999999999998876553
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.9e-06 Score=119.53 Aligned_cols=328 Identities=10% Similarity=0.047 Sum_probs=194.2
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhc-hhH-------H-HHHHHHHHHhcc-------CCCCHHHHHHHHHHH
Q psy14676 79 VILTALLPQLSSPRQAVRKRTIVALSHLVMSCN-LQL-------Y-TKLIDFLLEGLT-------TNKSTSTNRTYIQCF 142 (1827)
Q Consensus 79 ~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~-~~~-------~-~~l~~~ll~~L~-------~~~~~~~r~~ai~~l 142 (1827)
.+++.++..+.+ +.+|..|+.||..++..-. .+. + ...+..+++.+. .+.+.+.++..++.+
T Consensus 249 ~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll 326 (1204)
T 3a6p_A 249 KLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVL 326 (1204)
T ss_dssp HHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHH
Confidence 477777776664 5699999999999997432 111 1 112234444431 112356777777888
Q ss_pred HHHHHHhch--------hhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCC-------CccccchHHHHHHH--
Q psy14676 143 AAICRQAGH--------RFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCP-------KEITPHIQSITELC-- 205 (1827)
Q Consensus 143 ~~la~~~~~--------~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p-------~e~~p~l~~ii~~l-- 205 (1827)
..++..... ...+++..++++++.+++.++.++- ..++++|...+. ..+.+|++.+++.+
T Consensus 327 ~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs---~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~ 403 (1204)
T 3a6p_A 327 CALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLR---SSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMT 403 (1204)
T ss_dssp HHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHH---HHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhH---HHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 777754332 2345788999999999887766654 555667765321 23568899999999
Q ss_pred -HHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHH
Q psy14676 206 -LTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYR 284 (1827)
Q Consensus 206 -l~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~ 284 (1827)
+..++|+++.... ..+| .. ||+|+ .+|+++.-|..|+..+..+..++...|.. .+.
T Consensus 404 ~l~k~~yp~~~~~~-~~~~------------~~----~D~d~---~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~---~l~ 460 (1204)
T 3a6p_A 404 NLVKMGFPSKTDSP-SCEY------------SR----FDFDS---DEDFNAFFNSSRAQQGEVMRLACRLDPKT---SFQ 460 (1204)
T ss_dssp HHSCCCCSSCCSST-HHHH------------HH----HHCSS---HHHHHHHHHHHHHHHHHHHHHHHHHCHHH---HHH
T ss_pred HHHHhcCccccCCc-chhh------------hh----cccCC---cHHHHHHHHHHHHHHHHHHHHHHhcCHHH---HHH
Confidence 6666664332100 0000 00 00000 00112345899999999999998877643 234
Q ss_pred hhhHHHHhhcC-------------------------CCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhh
Q psy14676 285 LVSPPLIARFK-------------------------EREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCL 339 (1827)
Q Consensus 285 ~v~p~L~~~l~-------------------------e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1827)
.+.+++...+. +..|..+.+.+..+.++++........ +..
T Consensus 461 ~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~-----------~~l--- 526 (1204)
T 3a6p_A 461 MAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNR-----------EEI--- 526 (1204)
T ss_dssp HHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCT-----------TCC---
T ss_pred HHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhccccc-----------ccc---
Confidence 44455543332 223445566666666666544211100 000
Q ss_pred HHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccC
Q psy14676 340 LSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEED 419 (1827)
Q Consensus 340 l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed 419 (1827)
....+|.+++.+++ ++.++|.+|+.++.+++.+...+.. -.++++.++..|...+.+.+..
T Consensus 527 ~~~~~~~Ll~~ll~-~~~~~p~l~~~~i~~l~~l~~~~~~-~p~~L~~vL~~ll~~l~~~~~~----------------- 587 (1204)
T 3a6p_A 527 PVNDGIELLQMVLN-FDTKDPLILSCVLTNVSALFPFVTY-RPEFLPQVFSKLFSSVTFETVE----------------- 587 (1204)
T ss_dssp CHHHHHHHHHHHHH-CCCSCHHHHHHHHHHHHHHGGGGGT-CGGGHHHHHHHHHHHHHCCTTC-----------------
T ss_pred cHHHHHHHHHHHHh-CCCCChHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhhccCCcc-----------------
Confidence 01235555555433 2456889999999888887776532 2356777777777666421000
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhc
Q psy14676 420 GEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFK 475 (1827)
Q Consensus 420 ~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~ 475 (1827)
..+....+.+=++|.+|..++..++..+++.|.||++.+...+...+.
T Consensus 588 --------~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~ 635 (1204)
T 3a6p_A 588 --------ESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLS 635 (1204)
T ss_dssp --------STTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHH
T ss_pred --------cccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 000011112346999999999999999999999999999888877664
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=98.72 E-value=0.00095 Score=88.45 Aligned_cols=295 Identities=14% Similarity=0.112 Sum_probs=189.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhh----------hhhHHHHHHHHHHHhcCCCccccchhhh
Q psy14676 1146 DIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRN----------EITRLTTVKALTKIAASPLRIDLRPILT 1215 (1827)
Q Consensus 1146 D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~----------e~tR~~av~al~~ia~~~~~~dl~p~~~ 1215 (1827)
..+..+|--|+-++|-+-...+. ..+..|.+.+.+ +..|..|+-+||.+...+.+ .
T Consensus 406 s~~~~ik~GAllaLGli~ag~~~-------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-------e 471 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGFGR-------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-------I 471 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTTH-------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-------H
T ss_pred CCcHHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-------H
Confidence 35678999999999997665543 245555555543 33589999999987654322 3
Q ss_pred hhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccch
Q psy14676 1216 DGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVE 1295 (1827)
Q Consensus 1216 ~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~ 1295 (1827)
++++.|...+.+.+..+|..+.-+|+.+..-.+ +.+.+..++..+. .+.+-.++..+...|+-+..
T Consensus 472 ev~e~L~~~L~dd~~~~~~~AalALGli~vGTg---n~~ai~~LL~~~~---e~~~e~vrR~aalgLGll~~-------- 537 (963)
T 4ady_A 472 EVYEALKEVLYNDSATSGEAAALGMGLCMLGTG---KPEAIHDMFTYSQ---ETQHGNITRGLAVGLALINY-------- 537 (963)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC---CHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC---CHHHHHHHHHHHh---ccCcHHHHHHHHHHHHhhhC--------
Confidence 455566666665555677777778886644222 2344455554332 34455666666655554432
Q ss_pred hhHHhhhhhcccccCCCchhhHHHHHHHhc-CCCCHhHHHHHHHHHhh--hhhhhhhhhHHHHHHhhhc--CchhhHHHH
Q psy14676 1296 PAAASILPQIGRHTDLTSVADLKQVILNAF-TPTSEEVKSAASYTLGS--IAVGNLQQYVPFVLKEIEN--QPKRQYLLL 1370 (1827)
Q Consensus 1296 ~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~-~~~s~eVr~aAa~aLG~--i~~~~l~~~LP~Il~~i~~--~~~~q~~~l 1370 (1827)
|+ +...+.+++.+ .+.++-+|..|+.++|- +|.||.. .+..+++.+.+ ....|....
T Consensus 538 ----------g~-------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~-aIq~LL~~~~~d~~d~VRraAV 599 (963)
T 4ady_A 538 ----------GR-------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS-AVKRLLHVAVSDSNDDVRRAAV 599 (963)
T ss_dssp ----------TC-------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH-HHHHHHHHHHHCSCHHHHHHHH
T ss_pred ----------CC-------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHhccCCcHHHHHHHH
Confidence 21 11223333333 36789999999998885 5666632 22333333222 223555667
Q ss_pred HHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCC-cchHHHHHhhhcCCHHHHHH
Q psy14676 1371 HSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPS-NLLPRLQESLKSNSALMRTT 1449 (1827)
Q Consensus 1371 ~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~-~~lP~L~~~l~~~~~~~R~t 1449 (1827)
.+|+.|.. |.. ..++.++..|.+ +.+..+|..+|.+||.++..+|. ..+..|..+..+.+..+|..
T Consensus 600 iaLGlI~~-------g~~---e~v~rlv~~L~~---~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~ 666 (963)
T 4ady_A 600 IALGFVLL-------RDY---TTVPRIVQLLSK---SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQA 666 (963)
T ss_dssp HHHHHHTS-------SSC---SSHHHHTTTGGG---CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHhhcc-------CCH---HHHHHHHHHHHh---cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHH
Confidence 78887743 111 233444444433 56778999999999999988875 67788888889999999999
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcC--CchHHHHHHHHHhhhhh
Q psy14676 1450 VLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLED--KNGEVQNLAVKCLGPLV 1523 (1827)
Q Consensus 1450 ~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D--~~~~Vr~~a~~~Lg~L~ 1523 (1827)
++.|+..+...+.+...+.+. .++..+.+...| .++..|+.+.-+.|-+-
T Consensus 667 Ai~ALG~Ig~gtnna~~~rva------------------------~~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 667 AMIALSMILIQQTEKLNPQVA------------------------DINKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp HHHHHHHHSTTCCTTTCTTHH------------------------HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCccccchHHH------------------------HHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 999999999876555444432 455666666755 67899999999998764
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-07 Score=107.92 Aligned_cols=231 Identities=16% Similarity=0.161 Sum_probs=166.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh---H
Q psy14676 39 TGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ---L 114 (1827)
Q Consensus 39 ~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~---~ 114 (1827)
+|.|++.+.++ ++.+|..|+.+|+.++....+.... .....++.+++.|.++++.+|..|+.+|++++...++. .
T Consensus 4 i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 4 VEKLVKLLTST-DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 68888888765 6999999999999998765422211 12257888999999999999999999999998753321 1
Q ss_pred HH-HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhH-HHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCC
Q psy14676 115 YT-KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHI-ERVMPLILKYSREEDDELREFCLQACEAFVQRCPK 192 (1827)
Q Consensus 115 ~~-~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l-~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~ 192 (1827)
.. ..++.++..|.+ ++..+++.++.+++.++...+....... ...+|.+++.+.++++++|+.|+.++..+....+.
T Consensus 83 ~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 11 246677776664 5689999999999999964433222111 35889999999988999999998888877654322
Q ss_pred ccccc-hHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHH
Q psy14676 193 EITPH-IQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAI 271 (1827)
Q Consensus 193 e~~p~-l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l 271 (1827)
..... -..+++.+.+.+.. .++.+|..|+.+|..+
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~--------------------------------------------~~~~v~~~a~~~L~~l 197 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTS--------------------------------------------TDSEVQKEAARALANI 197 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTC--------------------------------------------SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCC--------------------------------------------CCHHHHHHHHHHHHHH
Confidence 11111 13467777776631 0147999999999999
Q ss_pred HHHcCCchhhhH-HhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhh
Q psy14676 272 IATRRDLIGDMY-RLVSPPLIARFKEREENVKSDIFHAYMALLKG 315 (1827)
Q Consensus 272 ~~~~~~~l~~~~-~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~ 315 (1827)
+...++....+. ..++|.|+..+++.++.+|..|+.+++.+...
T Consensus 198 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 198 ASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp TTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 865443322222 35789999999999999999999999999854
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.2e-07 Score=107.31 Aligned_cols=230 Identities=11% Similarity=0.132 Sum_probs=159.4
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHH-----HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhH
Q psy14676 80 ILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYT-----KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFA 154 (1827)
Q Consensus 80 il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~-----~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~ 154 (1827)
..+.+...|.++++.+|..|+.+|..+... .+.... ..++.++..|..+ ++.++..++.+|+.++...+..-.
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHH
Confidence 356677788899999999999999776665 222222 2457777777654 488999999999999874433222
Q ss_pred HhH-HHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccc-hHHHHHHHHHHhccCCCCCcccccccCCCCCCCCC
Q psy14676 155 EHI-ERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPH-IQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEG 232 (1827)
Q Consensus 155 p~l-~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~-l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~ 232 (1827)
..+ ...+|.+++.++++++++|+.|..++..+....+...... -...+|.+++.+..
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--------------------- 149 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--------------------- 149 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC---------------------
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC---------------------
Confidence 222 3588999999998999999999888877754322110111 12467777776621
Q ss_pred CCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhH-HhhhHHHHhhcCCCCHhHHHHHHHHHHH
Q psy14676 233 MDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMY-RLVSPPLIARFKEREENVKSDIFHAYMA 311 (1827)
Q Consensus 233 ~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~-~~v~p~L~~~l~e~ee~VR~aa~~al~~ 311 (1827)
.+|.+|+.|+.+|..++...++....+. ..++|.|+..+++.++.+|..++.+++.
T Consensus 150 -----------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 206 (252)
T 4db8_A 150 -----------------------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 206 (252)
T ss_dssp -----------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred -----------------------CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 1258999999999999865443322222 4678999999999999999999999999
Q ss_pred HHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHH
Q psy14676 312 LLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELV 374 (1827)
Q Consensus 312 ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~ 374 (1827)
++... +.....+.. ..+++.+.+.++++++++|..|...+..++
T Consensus 207 l~~~~-----------------~~~~~~~~~--~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 207 IASGG-----------------NEQKQAVKE--AGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HTTSC-----------------HHHHHHHHH--TTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HhcCC-----------------HHHHHHHHH--CCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 87321 001111111 236788888899999999997776766553
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.8e-05 Score=107.23 Aligned_cols=159 Identities=9% Similarity=0.022 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHHHhccccc-cccccchhhhhhhhh-hhhHHHHHhh---cCCchhhHHHHHHHHHHHHHHhccCCCCCC
Q psy14676 1050 MRTTHQSNQTFNVIIQRNDI-HNHNEETSFIYSFYY-FLLSPVIASV---GDNFYKITAEALLVLQQFVKVIRPLTSPSS 1124 (1827)
Q Consensus 1050 ~R~~a~~~L~~l~~~~~~~l-~~~~~~~~~~~~~l~-~Lip~l~~~l---~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~ 1124 (1827)
..++....+.++........ .++ ++ .+.|.+++.+ ....|+++..++..++.+...+..
T Consensus 502 ~~ea~~~~leav~~~~~~~~e~~~----------l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~------ 565 (1204)
T 3a6p_A 502 QWEAMTLFLESVITQMFRTLNREE----------IPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTY------ 565 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTC----------CCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGT------
T ss_pred HHHHHHHHHHHHHHHHhccccccc----------ccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhc------
Confidence 44555555655555442222 244 33 2444454443 445789999999988888876541
Q ss_pred CCcchhHHHHHHHHHHHHhhcC----------CCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhh-----
Q psy14676 1125 YDFAPFTSDIYQCTLVRLKAAD----------IDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEI----- 1189 (1827)
Q Consensus 1125 ~~~~~~l~~l~~~ll~~L~~~D----------~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~----- 1189 (1827)
...|+..+++.++..+.... ...+||.+|..++..+....++.+.|+++.+...+...+....
T Consensus 566 --~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~ 643 (1204)
T 3a6p_A 566 --RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQM 643 (1204)
T ss_dssp --CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHH
T ss_pred --CchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHH
Confidence 12578888888888876210 3458999999999999999999999999999988877665332
Q ss_pred hHHHHHHHHHHHhcCCCc-cccchhhhhhHhhhhhhhc
Q psy14676 1190 TRLTTVKALTKIAASPLR-IDLRPILTDGIPILGSFLR 1226 (1827)
Q Consensus 1190 tR~~av~al~~ia~~~~~-~dl~p~~~~~l~~L~~~Lr 1226 (1827)
.+..-..+++.++..... .....++..+++.+...+.
T Consensus 644 e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~ 681 (1204)
T 3a6p_A 644 EKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWL 681 (1204)
T ss_dssp HHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 367777788888643111 1112345555555554443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=98.63 E-value=6.7e-06 Score=108.60 Aligned_cols=305 Identities=17% Similarity=0.139 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhh-----hhhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhh
Q psy14676 1151 VKERAISCMGQIICNLGDYLKSELPVCLPILLDRLR-----NEITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFL 1225 (1827)
Q Consensus 1151 Vre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~-----~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~L 1225 (1827)
.+-.|..++|.+-. |. ....+..|-+.+. ++..|..|+.++|.+..... .+++..|..++
T Consensus 374 ~k~sA~aSLGlIh~--g~-----~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--------~~~~~lL~~~L 438 (963)
T 4ady_A 374 AKFTATASLGVIHK--GN-----LLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--------RDTTDYLKNII 438 (963)
T ss_dssp HHHHHHHHHHHHTS--SC-----TTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--------HHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcc--Cc-----hHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--------HHHHHHHHHHH
Confidence 35667777777643 21 1223333333332 34469999999999876432 23556666777
Q ss_pred cchh--------HHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhh
Q psy14676 1226 RKNQ--------RALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPA 1297 (1827)
Q Consensus 1226 rk~~--------r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~ 1297 (1827)
.+++ ..+|..+.-+|+.... |+. .++ ++..|.+++.+.+..++..+...|+-+..
T Consensus 439 ~~~~~~~~~~~~~~ir~gAaLGLGla~~--GS~-~ee----v~e~L~~~L~dd~~~~~~~AalALGli~v---------- 501 (963)
T 4ady_A 439 VENSGTSGDEDVDVLLHGASLGIGLAAM--GSA-NIE----VYEALKEVLYNDSATSGEAAALGMGLCML---------- 501 (963)
T ss_dssp HHHSSCCSCHHHHHHHHHHHHHHHHHST--TCC-CHH----HHHHHHHHHHTCCHHHHHHHHHHHHHHHT----------
T ss_pred cCccccccccccHHHHHHHHHHHHHHhc--CCC-CHH----HHHHHHHHHhcCCHHHHHHHHHHHhhhhc----------
Confidence 6554 5688888888886422 321 233 45555667766665555444444443322
Q ss_pred HHhhhhhcccccCCCchhhHHHHHHH-hcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhc--CchhhHHHHHHHH
Q psy14676 1298 AASILPQIGRHTDLTSVADLKQVILN-AFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIEN--QPKRQYLLLHSLK 1374 (1827)
Q Consensus 1298 i~~~lgeiG~~~~~~~~~~l~~~~l~-~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~--~~~~q~~~l~aL~ 1374 (1827)
|.. ..+.+..++. +..+.++++|..|+.+||-+..|.- ...+.+++.+.. ++-.||....+++
T Consensus 502 --------GTg-----n~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~-e~~~~li~~L~~~~dp~vRygaa~alg 567 (963)
T 4ady_A 502 --------GTG-----KPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ-ELADDLITKMLASDESLLRYGGAFTIA 567 (963)
T ss_dssp --------TCC-----CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG-GGGHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred --------ccC-----CHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh-HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 211 1233333333 3356789999999999998876653 345566666543 3445555544444
Q ss_pred HHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCCcchHHHHHhh-hcCCHHHHHHHHHH
Q psy14676 1375 EIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESL-KSNSALMRTTVLTA 1453 (1827)
Q Consensus 1375 Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l-~~~~~~~R~t~l~A 1453 (1827)
-.-. |... ...+..++..+.+ +.++.+|..|+.+||.+..-+|+. +|++.+++ .+.++.+|..+.-|
T Consensus 568 lAya-------GTGn-~~aIq~LL~~~~~---d~~d~VRraAViaLGlI~~g~~e~-v~rlv~~L~~~~d~~VR~gAalA 635 (963)
T 4ady_A 568 LAYA-------GTGN-NSAVKRLLHVAVS---DSNDDVRRAAVIALGFVLLRDYTT-VPRIVQLLSKSHNAHVRCGTAFA 635 (963)
T ss_dssp HHTT-------TSCC-HHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHTSSSCSS-HHHHTTTGGGCSCHHHHHHHHHH
T ss_pred HHhc-------CCCC-HHHHHHHHHHhcc---CCcHHHHHHHHHHHHhhccCCHHH-HHHHHHHHHhcCCHHHHHHHHHH
Confidence 3211 1111 1223333333333 567789999999999998888864 67777755 57899999999999
Q ss_pred HHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhh---h
Q psy14676 1454 VKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEF---Q 1530 (1827)
Q Consensus 1454 lk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~---~ 1530 (1827)
+..+...++. ..++..+..+++|++..||.+|+.+||.+..-.+.. .
T Consensus 636 LGli~aGn~~------------------------------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~r 685 (963)
T 4ady_A 636 LGIACAGKGL------------------------------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQ 685 (963)
T ss_dssp HHHHTSSSCC------------------------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTT
T ss_pred HHHhccCCCc------------------------------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchH
Confidence 9877643321 145678888899999999999999999998655444 4
Q ss_pred HHHHHHHHHhhhc
Q psy14676 1531 VETIVDALCSNMV 1543 (1827)
Q Consensus 1531 ~~~~v~~l~~~l~ 1543 (1827)
+..+...+...+.
T Consensus 686 va~~l~~L~~~~~ 698 (963)
T 4ady_A 686 VADINKNFLSVIT 698 (963)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5666666555554
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.1e-07 Score=109.93 Aligned_cols=229 Identities=15% Similarity=0.158 Sum_probs=162.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh---H
Q psy14676 39 TGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ---L 114 (1827)
Q Consensus 39 ~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~---~ 114 (1827)
.|.+.+.+.++ ++.++..|+.+|..++....+.... .....++.+++.|+++++.+|..|+.+|++++...++. .
T Consensus 14 ~~~~~~~L~s~-~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 14 LPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp HHHHHHHHHSS-CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 46666667654 7899999999998777653221111 12257888999999999999999999999999743322 1
Q ss_pred HH-HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHh-HHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCC
Q psy14676 115 YT-KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEH-IERVMPLILKYSREEDDELREFCLQACEAFVQRCPK 192 (1827)
Q Consensus 115 ~~-~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~-l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~ 192 (1827)
.. ..++.++..|.+ +++.+|+.++.+|+.++.....+.... -...+|.+++.++++++++|+.|..++..+....+.
T Consensus 93 ~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 93 IDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 11 256777777766 468999999999999987655442222 246899999999988999999998888777654322
Q ss_pred ccccch-HHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHH
Q psy14676 193 EITPHI-QSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAI 271 (1827)
Q Consensus 193 e~~p~l-~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l 271 (1827)
...... ..+++.+.+.+... +..+|..|+.+|..+
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~--------------------------------------------~~~v~~~a~~~L~~l 207 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSP--------------------------------------------NEQILQEALWALSNI 207 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCS--------------------------------------------SHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHCCC--------------------------------------------CHHHHHHHHHHHHHH
Confidence 111111 34566777665320 136999999999999
Q ss_pred HHHcCCchhhhHH-hhhHHHHhhcCCCCHhHHHHHHHHHHHHH
Q psy14676 272 IATRRDLIGDMYR-LVSPPLIARFKEREENVKSDIFHAYMALL 313 (1827)
Q Consensus 272 ~~~~~~~l~~~~~-~v~p~L~~~l~e~ee~VR~aa~~al~~ll 313 (1827)
+...++....+.+ .++|.|+..+++.++.+|..|..+++.+.
T Consensus 208 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 208 ASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred hcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 8654443333333 47899999999999999999999997654
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.5e-06 Score=116.30 Aligned_cols=308 Identities=14% Similarity=0.193 Sum_probs=223.3
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhh-chh-HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc--hhhH
Q psy14676 79 VILTALLPQLSSPRQAVRKRTIVALSHLVMSC-NLQ-LYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG--HRFA 154 (1827)
Q Consensus 79 ~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~-~~~-~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~--~~~~ 154 (1827)
..+..+++.+......=++.|..++..+...- ... .-..+++.+...+....+. +.++.+++.+|+..+ ..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e 90 (986)
T 2iw3_A 14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVE 90 (986)
T ss_dssp HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTH
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcc
Confidence 34555666666544555577777777776532 111 1124556666666442222 899999999997764 4789
Q ss_pred HhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCC
Q psy14676 155 EHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMD 234 (1827)
Q Consensus 155 p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d 234 (1827)
||+-.++|.++..+.+....+|+.|..|..+++..+|.+- +..++|.++.+|..
T Consensus 91 ~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a---~~~~~~~~~~~~~~----------------------- 144 (986)
T 2iw3_A 91 PYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA---IKALLPHLTNAIVE----------------------- 144 (986)
T ss_dssp HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG---HHHHHHHHHHHHHH-----------------------
T ss_pred cchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHHhcc-----------------------
Confidence 9999999999999988889999999999999999987642 46788888888732
Q ss_pred CcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHh
Q psy14676 235 TEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLK 314 (1827)
Q Consensus 235 ~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~ 314 (1827)
..-|..+.+|.++++.++...|+.+...++.++|.+...+.|-..+|+.+|..++..++.
T Consensus 145 --------------------~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 145 --------------------TNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATE 204 (986)
T ss_dssp --------------------CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGG
T ss_pred --------------------ccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHh
Confidence 014999999999999999988988999999999999999999999999999999999885
Q ss_pred hhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHH
Q psy14676 315 GTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTS 394 (1827)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~ 394 (1827)
.... .-+++.+|.+++.+. +++. ...|+..|+.-..| ...-++-+.-++|.+.+
T Consensus 205 ~~~n-------------------~d~~~~~~~~~~~~~----~p~~--~~~~~~~l~~~tfv-~~v~~~~l~~~~p~l~r 258 (986)
T 2iw3_A 205 TVDN-------------------KDIERFIPSLIQCIA----DPTE--VPETVHLLGATTFV-AEVTPATLSIMVPLLSR 258 (986)
T ss_dssp GCCC-------------------TTTGGGHHHHHHHHH----CTTH--HHHHHHHHTTCCCC-SCCCHHHHHHHHHHHHH
T ss_pred cCCC-------------------cchhhhHHHHHHHhc----Chhh--hHHHHHHhhcCeeE-eeecchhHHHHHHHHHh
Confidence 4321 113555555555444 4532 34444443322111 11114566788899999
Q ss_pred HhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh--hhhhhhHHhhhhhHHH
Q psy14676 395 VAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR--DLIGDMYRLVSPPLIA 472 (1827)
Q Consensus 395 ~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~--~~f~~~~~~l~~~L~~ 472 (1827)
.|.+ .+..+++.+.-.+.++++-.. ....||++.|+|-+.+
T Consensus 259 ~l~~-------------------------------------~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~ 301 (986)
T 2iw3_A 259 GLNE-------------------------------------RETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKS 301 (986)
T ss_dssp HHTS-------------------------------------SSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHH
T ss_pred hhcc-------------------------------------CcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHH
Confidence 9842 234477888889999997666 5667999999999988
Q ss_pred hhc-chhhhhHHHHHHHHHHHHhhccc
Q psy14676 473 RFK-EREENVKSDIFHAYMALLKGTRT 498 (1827)
Q Consensus 473 ~~~-d~~~~Vr~~a~~~l~~L~~~~g~ 498 (1827)
... -..+++|.-+-+.+..|.+..+.
T Consensus 302 ~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 302 NFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 664 44899999999999999877663
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=98.45 E-value=1.7e-05 Score=100.15 Aligned_cols=358 Identities=11% Similarity=0.042 Sum_probs=210.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh--HH
Q psy14676 39 TGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ--LY 115 (1827)
Q Consensus 39 ~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~--~~ 115 (1827)
+|.|+..+.++ ++.++..|+.+|..++.+-.+.-.. ...-.++.|+..|.++++.++..|+.||.+++..-++. .+
T Consensus 4 l~~lv~~L~s~-~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 4 IPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp HHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 57888888765 7899999999999987432221101 12346888999999999999999999999999752221 11
Q ss_pred --HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHH-hHHHHHHHHHhhcc--------cC--------chHHH
Q psy14676 116 --TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAE-HIERVMPLILKYSR--------EE--------DDELR 176 (1827)
Q Consensus 116 --~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p-~l~~i~p~l~~~~~--------~~--------~delR 176 (1827)
...++.+++.|...++..+++.++.+|+.++.. + .... .+...+|.+++.+. .+ +.+++
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~-~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-D-ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-S-STHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-H-HhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 123678888887556789999999999999976 2 2222 23378888888872 22 34455
Q ss_pred HHHHHHHHHHHHhCCCccccch---HHHHHHHHHHhccC-----CCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCC
Q psy14676 177 EFCLQACEAFVQRCPKEITPHI---QSITELCLTYITYD-----PNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDN 248 (1827)
Q Consensus 177 e~al~ale~~~~~~p~e~~p~l---~~ii~~ll~~l~~d-----pn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~ 248 (1827)
..|..++..++.. |+ .+..+ +.+++.+++++... ++-
T Consensus 161 ~~a~~aL~nLs~~-~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~--------------------------------- 205 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DA-GRQTMRNYSGLIDSLMAYVQNCVAASRCDD--------------------------------- 205 (457)
T ss_dssp HHHHHHHHHHTTS-HH-HHHHHTTSTTHHHHHHHHHHHHHHHTCTTC---------------------------------
T ss_pred HHHHHHHHHHccC-HH-HHHHHHHcCCCHHHHHHHHHhhccccCCch---------------------------------
Confidence 5777777766643 32 11111 14566666655420 100
Q ss_pred CCCCCccchhhHHHHHHH-----------------------------------HHHHHHH---------H------cCCc
Q psy14676 249 EYSDDDDMSWKVRRAAAK-----------------------------------CLEAIIA---------T------RRDL 278 (1827)
Q Consensus 249 e~sdddD~sWkVRraAak-----------------------------------~L~~l~~---------~------~~~~ 278 (1827)
++...+.. |++.... . .++-
T Consensus 206 ----------~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (457)
T 1xm9_A 206 ----------KSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKG 275 (457)
T ss_dssp ----------TTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCG
T ss_pred ----------HHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchH
Confidence 00111111 1111100 0 0111
Q ss_pred hhh-hHHhhhHHHHhhcC-CCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhH-Hhhh--HHHHHHHHH
Q psy14676 279 IGD-MYRLVSPPLIARFK-EREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLL-STQV--PSLVKALQC 353 (1827)
Q Consensus 279 l~~-~~~~v~p~L~~~l~-e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~l--p~Iv~~l~~ 353 (1827)
... +-..++|.|+..++ ..++.++..++.+++.+..... .....+ +..+ ...+|.+.+
T Consensus 276 ~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~-----------------~~~~~~~~~~v~~~~~l~~Lv~ 338 (457)
T 1xm9_A 276 SGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKG-----------------LMSSGMSQLIGLKEKGLPQIAR 338 (457)
T ss_dssp GGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSS-----------------SHHHHHHHHHHTTSCCHHHHHH
T ss_pred HHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcC-----------------cchHHHHHHHHHHcCCchHHHH
Confidence 111 12345666777764 3468999999999998874211 011112 1122 235678888
Q ss_pred HhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCC
Q psy14676 354 QLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDD 433 (1827)
Q Consensus 354 ~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~ 433 (1827)
.|++.+.++|..+..+++.++..- ..-...-...+|.+.+.|... +. +
T Consensus 339 LL~~~~~~v~~~A~~aL~nls~~~-~~~~~i~~~~i~~Lv~lL~~~--------------~~-------------~---- 386 (457)
T 1xm9_A 339 LLQSGNSDVVRSGASLLSNMSRHP-LLHRVMGNQVFPEVTRLLTSH--------------TG-------------N---- 386 (457)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTSG-GGHHHHHHHTHHHHHHTTTSC--------------CS-------------C----
T ss_pred HHhCCCHhHHHHHHHHHHHHhcCH-HHHHHHHHhhhHHHHHhccCC--------------CC-------------C----
Confidence 899999999998888889887632 111111134677788887321 00 0
Q ss_pred CcccHHHHHHHHHHHHHHHHHhhhhhhhhH-HhhhhhHHHhhcch-hhhhHHHHHHHHHHHH
Q psy14676 434 DDMSWKVRRAAAKCLEAIIATRRDLIGDMY-RLVSPPLIARFKER-EENVKSDIFHAYMALL 493 (1827)
Q Consensus 434 ~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~-~~l~~~L~~~~~d~-~~~Vr~~a~~~l~~L~ 493 (1827)
....-.+..+++.++.++....++.-..+. ...++.+...+... ..+|+..|...+..+.
T Consensus 387 ~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 387 TSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp STTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred CCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 001123666788888887753332111111 24577777777777 7899999998766554
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.42 E-value=7.8e-06 Score=85.01 Aligned_cols=206 Identities=16% Similarity=0.236 Sum_probs=144.2
Q ss_pred hhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcC-CCChhHHHHHHHHHHHHHHhCCCc
Q psy14676 1214 LTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVS-ESDLHIAQLTLTLLTSIAKIQPNA 1292 (1827)
Q Consensus 1214 ~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~-d~D~~l~~~al~~L~~l~~~~~~~ 1292 (1827)
-.+++..+.++|.+.-|.++++++..+.++...++. .+..++..|..+++ +....+.+.....++.++...|+.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e-----l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-----LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG-----GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH-----HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 356778888899988999999999999999887654 45566666666665 445556666666677666655531
Q ss_pred cchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhh----hcC-chhhH
Q psy14676 1293 LVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEI----ENQ-PKRQY 1367 (1827)
Q Consensus 1293 ~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i----~~~-~~~q~ 1367 (1827)
...++|+++.-+.-+.+..|.+.+++||+|+..| +..+|.|...+ .+. ...+.
T Consensus 105 ---------------------v~~vVp~lfanyrigd~kikIn~~yaLeeIaran-P~l~~~v~rdi~smltskd~~Dkl 162 (253)
T 2db0_A 105 ---------------------VKSMIPVLFANYRIGDEKTKINVSYALEEIAKAN-PMLMASIVRDFMSMLSSKNREDKL 162 (253)
T ss_dssp ---------------------HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHTSCSSHHHHH
T ss_pred ---------------------HHhhHHHHHHHHhcCCccceecHHHHHHHHHHhC-hHHHHHHHHHHHHHhcCCChHHHH
Confidence 3568899999999999999999999999998877 44556665544 321 12333
Q ss_pred HHHHHHHHHHhhccccccchhh---hhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCC--cchHHHHHhhhcC
Q psy14676 1368 LLLHSLKEIISWQSTSTSGVAQ---LQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPS--NLLPRLQESLKSN 1442 (1827)
Q Consensus 1368 ~~l~aL~Eii~~~~~s~~g~~~---L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~--~~lP~L~~~l~~~ 1442 (1827)
..|.-+.- .|.++ ..||+|. |+..+.+.+|-+|..+-|+||.|+..+|. .++-.-.+-+.+.
T Consensus 163 ~aLnFi~a---------lGen~~~yv~PfLpr----L~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D~ 229 (253)
T 2db0_A 163 TALNFIEA---------MGENSFKYVNPFLPR----IINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDT 229 (253)
T ss_dssp HHHHHHHT---------CCTTTHHHHGGGHHH----HHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHH---------HhccCccccCcchHH----HHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCc
Confidence 33332211 23333 3466555 45555677899999999999999999986 3333333445677
Q ss_pred CHHHHHHHHHHHHHHhh
Q psy14676 1443 SALMRTTVLTAVKFTIS 1459 (1827)
Q Consensus 1443 ~~~~R~t~l~Alk~~~~ 1459 (1827)
+..+...+..++..+..
T Consensus 230 S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 230 SSLVNKTVKEGISRLLL 246 (253)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888876653
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=6.6e-06 Score=96.78 Aligned_cols=188 Identities=15% Similarity=0.092 Sum_probs=140.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHcCC-----chhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCC
Q psy14676 254 DDMSWKVRRAAAKCLEAIIATRRD-----LIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPN 328 (1827)
Q Consensus 254 dD~sWkVRraAak~L~~l~~~~~~-----~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~ 328 (1827)
.+..||.|..|...|..++...+. .....|....+.+.+.++|.+-.|...++.++..++...+..
T Consensus 19 ~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~--------- 89 (278)
T 4ffb_C 19 TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS--------- 89 (278)
T ss_dssp TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC-----------
T ss_pred ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh---------
Confidence 467899999999999888866442 122246667888889999999999999999999998653321
Q ss_pred CCCCCCChHhhHHhhhHHHHHHHHH-HhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCC
Q psy14676 329 QMDQEDSPLCLLSTQVPSLVKALQC-QLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGE 407 (1827)
Q Consensus 329 ~~~~~~~~~~~l~~~lp~Iv~~l~~-~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~ 407 (1827)
.+........+..++|.++. .|.|..+.+|..+...+-.++.... ....+++.+...++
T Consensus 90 -----~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-----~~~~~~e~l~~~l~---------- 149 (278)
T 4ffb_C 90 -----SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-----SITQSVELVIPFFE---------- 149 (278)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-----SSHHHHHHHGGGGG----------
T ss_pred -----hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHh----------
Confidence 11234556678888888875 4889999999988888777765432 12344555555542
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh-hh--hhhhHHhhhhhHHHhhcchhhhhHHH
Q psy14676 408 GGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR-DL--IGDMYRLVSPPLIARFKEREENVKSD 484 (1827)
Q Consensus 408 ~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~-~~--f~~~~~~l~~~L~~~~~d~~~~Vr~~ 484 (1827)
..+|++|.+++.+|..+...+| .. ..+.++.+++.+..++.|+.+.||.+
T Consensus 150 ---------------------------~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~a 202 (278)
T 4ffb_C 150 ---------------------------KKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQ 202 (278)
T ss_dssp ---------------------------CSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHH
T ss_pred ---------------------------ccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHH
Confidence 3689999999999999999988 33 34577889999999999999999999
Q ss_pred HHHHHHHHHhhcc
Q psy14676 485 IFHAYMALLKGTR 497 (1827)
Q Consensus 485 a~~~l~~L~~~~g 497 (1827)
|...+.++.+.+|
T Consensus 203 A~~l~~~ly~~~G 215 (278)
T 4ffb_C 203 TMNLIVEIYKVTG 215 (278)
T ss_dssp HHHHHHHHHTC--
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998888
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=98.35 E-value=9.5e-05 Score=93.40 Aligned_cols=341 Identities=13% Similarity=0.105 Sum_probs=206.0
Q ss_pred HHHHHHhhhhh--hhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHh
Q psy14676 1178 LPILLDRLRNE--ITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEM 1255 (1827)
Q Consensus 1178 L~~Ll~~L~~e--~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~ 1255 (1827)
+|.|+..|+.+ ..+..|+.++..++.........-.-..++|.|..+|+..+..++..+..+|..+.... .......
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~-~~~k~~i 82 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS-TTNKLET 82 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-HHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHHH
Confidence 56677777644 45899999999988532111101112457899999999888899999999999987631 1111111
Q ss_pred -HHHHHHHhhhhcC-CCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhc--------
Q psy14676 1256 -LNKVTVELAPLVS-ESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAF-------- 1325 (1827)
Q Consensus 1256 -~~~ll~~L~~ll~-d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~-------- 1325 (1827)
-.+.+|.|..++. +.+..++..+..+|..++.. +..- ..++ ...+|.+++.+
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~--~~i~---------------~g~i~~Lv~ll~~~~s~~~ 144 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELK--EELI---------------ADALPVLADRVIIPFSGWC 144 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTH--HHHH---------------HHHHHHHHHHTTHHHHTCC
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhH--HHHH---------------hccHHHHHHHHhccccccc
Confidence 1245788888998 77899999999999998875 3210 0011 13445555555
Q ss_pred CC--------CCHhHHHHHHHHHhhhhhhh-----h---hhhHHHHHHhhhc-------CchhhHHHHHHHHHHHh----
Q psy14676 1326 TP--------TSEEVKSAASYTLGSIAVGN-----L---QQYVPFVLKEIEN-------QPKRQYLLLHSLKEIIS---- 1378 (1827)
Q Consensus 1326 ~~--------~s~eVr~aAa~aLG~i~~~~-----l---~~~LP~Il~~i~~-------~~~~q~~~l~aL~Eii~---- 1378 (1827)
.+ .++++...|+.+|++++.+. + ...+|.++..+.. +.+.....+..|..+-.
T Consensus 145 ~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~ 224 (457)
T 1xm9_A 145 DGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDA 224 (457)
T ss_dssp ---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHH
T ss_pred cCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhc
Confidence 22 24566679999999876431 1 1356666665543 11222222222222210
Q ss_pred ------------------------hccc-------------------cccchhhhhchHHHHHHHHhhhhc-CCchhHHH
Q psy14676 1379 ------------------------WQST-------------------STSGVAQLQQFVPAIWAQLFLHCE-CQEEGTRN 1414 (1827)
Q Consensus 1379 ------------------------~~~~-------------------s~~g~~~L~~~~~~i~~~L~~~~~-~~~e~vR~ 1414 (1827)
.... ...|.+.+ +-....+.|...+. +.++.++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~l~~L~~lL~~~~~~~~~e 302 (457)
T 1xm9_A 225 EVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWL--YHSDAIRTYLNLMGKSKKDATLE 302 (457)
T ss_dssp HSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGG--GSHHHHHHHHHHHHHCCCHHHHH
T ss_pred cCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHH--hCcchHHHHHHHHhhcCCHHHHH
Confidence 0000 00000001 11223334444332 44577899
Q ss_pred HHHHHHHHhhccC-------------CCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhh
Q psy14676 1415 VVAECLGKLTLID-------------PSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSEL 1481 (1827)
Q Consensus 1415 ~aAecLGkL~~~~-------------p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l 1481 (1827)
.++.+|+.|+..+ ....+|.|.+++.+++..+|..++.+|+.+..+. ..+
T Consensus 303 ~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~------~~~----------- 365 (457)
T 1xm9_A 303 ACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP------LLH----------- 365 (457)
T ss_dssp HHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG------GGH-----------
T ss_pred HHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH------HHH-----------
Confidence 9999999998633 2467899999999999999999999999997532 111
Q ss_pred hhcccccChhHHHHHHHHHHHhhcCCch------HHHHHHHHHhhhhhhhhhhh----hHHHHHHHHHhhhccc-ccccc
Q psy14676 1482 QKDSIKLDDDSERKVVKMLLRLLEDKNG------EVQNLAVKCLGPLVNKVKEF----QVETIVDALCSNMVSD-KEQLR 1550 (1827)
Q Consensus 1482 ~~~~~~~~~~~~~~l~~~ll~~l~D~~~------~Vr~~a~~~Lg~L~~~l~~~----~~~~~v~~l~~~l~~~-~~~~~ 1550 (1827)
. .+....+|.++.+|..+++ .|...++.+++.++..-+.. .-...+.++..-+.++ ++
T Consensus 366 --~------~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~--- 434 (457)
T 1xm9_A 366 --R------VMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASP--- 434 (457)
T ss_dssp --H------HHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCH---
T ss_pred --H------HHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcH---
Confidence 0 0123467999999987653 68888999998887533211 0123344444444444 33
Q ss_pred cCCccchhHHHHHHHhhhhccC
Q psy14676 1551 DISSIGLKTVISVVYCLGDRNS 1572 (1827)
Q Consensus 1551 ~~~~~~vRr~Al~~l~s~a~~~ 1572 (1827)
++++.|...|.....++
T Consensus 435 -----~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 435 -----KAAEAARLLLSDMWSSK 451 (457)
T ss_dssp -----HHHHHHHHHHHTTSSST
T ss_pred -----HHHHHHHHHHHHHHcch
Confidence 89999999998776543
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.34 E-value=3.5e-06 Score=94.27 Aligned_cols=180 Identities=17% Similarity=0.140 Sum_probs=134.4
Q ss_pred hhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhh--------hhHHHHHHhhhcC-chhhHHHHHHHHHHHhhcccccc
Q psy14676 1315 ADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQ--------QYVPFVLKEIENQ-PKRQYLLLHSLKEIISWQSTSTS 1385 (1827)
Q Consensus 1315 ~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~--------~~LP~Il~~i~~~-~~~q~~~l~aL~Eii~~~~~s~~ 1385 (1827)
+...+.+...+.++++++|..|+.+|++++.++-. ..+|.+++.+.++ +..+...+++|+.+...
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~------ 84 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG------ 84 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS------
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC------
Confidence 45778899999999999999999999998754321 3678899988763 45677788888887531
Q ss_pred chhhhhc-hH-HHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCC--------CcchHHHHHhhhcCCHHHHHHHHHHHH
Q psy14676 1386 GVAQLQQ-FV-PAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDP--------SNLLPRLQESLKSNSALMRTTVLTAVK 1455 (1827)
Q Consensus 1386 g~~~L~~-~~-~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p--------~~~lP~L~~~l~~~~~~~R~t~l~Alk 1455 (1827)
....+. .+ ...++.|++.+.+.+..+|..++.+|+.|+..++ ...+|.|.++++++++.+|..++.+|.
T Consensus 85 -~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 163 (210)
T 4db6_A 85 -GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163 (210)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred -CcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 111111 11 2245677777777788899999999999997554 357899999999999999999999999
Q ss_pred HHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhh
Q psy14676 1456 FTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVN 1524 (1827)
Q Consensus 1456 ~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~ 1524 (1827)
.+....+ ..+ ..+ .....++.++.++.++++.||..|..+|+.|+.
T Consensus 164 ~l~~~~~-----~~~--------~~~----------~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 164 NIASGGN-----EQK--------QAV----------KEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHTSCH-----HHH--------HHH----------HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHcCCc-----HHH--------HHH----------HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9986421 111 000 123467999999999999999999999999874
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.33 E-value=4.1e-05 Score=79.70 Aligned_cols=216 Identities=17% Similarity=0.162 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcC-CCCHHHHHHHHHHHHHHHHhhch
Q psy14676 34 VCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLS-SPRQAVRKRTIVALSHLVMSCNL 112 (1827)
Q Consensus 34 v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~-~~~~~VRk~Ai~aL~~l~~~~~~ 112 (1827)
.-++++-.|+..++++ -|-|+..|+.++..+.+..+.. +..++..++-.+. +..-..-..-..++|.++..- +
T Consensus 29 ~d~~~l~~lI~~LDDD-lwtV~kNAl~vi~~i~~~~~el----~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~-P 102 (253)
T 2db0_A 29 YDESVLKKLIELLDDD-LWTVVKNAISIIMVIAKTREDL----YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK-P 102 (253)
T ss_dssp HCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCGGG----HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-H
T ss_pred hhHHHHHHHHHHhccH-HHHHHHhHHHHHHHHHHHhHHH----HHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC-H
Confidence 4467777888888765 7999999999999999887764 4456777777765 444455455567899988865 5
Q ss_pred hHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCC
Q psy14676 113 QLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPK 192 (1827)
Q Consensus 113 ~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~ 192 (1827)
+...++++.+...+.-. ++..|-..-.+++.+++..|..++..+.+++. .+++.+++=|-.|+.+++++...-++
T Consensus 103 e~v~~vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l~~~v~rdi~s----mltskd~~Dkl~aLnFi~alGen~~~ 177 (253)
T 2db0_A 103 ELVKSMIPVLFANYRIG-DEKTKINVSYALEEIAKANPMLMASIVRDFMS----MLSSKNREDKLTALNFIEAMGENSFK 177 (253)
T ss_dssp HHHHHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH----HTSCSSHHHHHHHHHHHHTCCTTTHH
T ss_pred HHHHhhHHHHHHHHhcC-CccceecHHHHHHHHHHhChHHHHHHHHHHHH----HhcCCChHHHHHHHHHHHHHhccCcc
Confidence 56788888888888664 68899999999999999999887665555543 34455666666666655555555556
Q ss_pred ccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHH
Q psy14676 193 EITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAII 272 (1827)
Q Consensus 193 e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~ 272 (1827)
.+.||+|.++.++ || +| --||.+|.++|..++
T Consensus 178 yv~PfLprL~aLL-----~D-------~d------------------------------------eiVRaSaVEtL~~lA 209 (253)
T 2db0_A 178 YVNPFLPRIINLL-----HD-------GD------------------------------------EIVRASAVEALVHLA 209 (253)
T ss_dssp HHGGGHHHHHGGG-----GC-------SS------------------------------------HHHHHHHHHHHHHHH
T ss_pred ccCcchHHHHHHH-----cC-------cc------------------------------------hhhhHHHHHHHHHHH
Confidence 7788888766543 21 00 059999999999999
Q ss_pred HHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHH
Q psy14676 273 ATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALL 313 (1827)
Q Consensus 273 ~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll 313 (1827)
...|. +..++-.-.+.|+++.+.|...+-.+++.+.
T Consensus 210 ~~npk-----lRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 210 TLNDK-----LRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp TSCHH-----HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred HcCHH-----HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 76554 5566666778999999999999999998876
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00017 Score=92.37 Aligned_cols=368 Identities=10% Similarity=0.041 Sum_probs=218.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh---
Q psy14676 38 ITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ--- 113 (1827)
Q Consensus 38 L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~--- 113 (1827)
-+|.|++.+.++ ++.++.+|..+|..++....+.-.. ...-.++.|+..|.++++.||..|+.||.+++...+++
T Consensus 49 ~i~~LV~~L~s~-~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 49 ELPEVIAMLGFR-LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred cHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 468888888765 7899999999998887533221101 11235688999999999999999999999999742111
Q ss_pred HH--HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhc------------------ccCch
Q psy14676 114 LY--TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYS------------------REEDD 173 (1827)
Q Consensus 114 ~~--~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~------------------~~~~d 173 (1827)
.+ ..-++.|+..|....+..+++.+..+|..++.....+.. -...-+|.+++.+ ..+++
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~-I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKME-IVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHH-HHHHTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHH-HHhccHHHHHHHHhcccccccccccccccccccccH
Confidence 11 124677888886655678899999999999874321111 1233456665543 12357
Q ss_pred HHHHHHHHHHHHHHHhCCCccccc---hHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCC
Q psy14676 174 ELREFCLQACEAFVQRCPKEITPH---IQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEY 250 (1827)
Q Consensus 174 elRe~al~ale~~~~~~p~e~~p~---l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~ 250 (1827)
++++.|..+|..+.... ++.+.. ...+++.++.++... ....
T Consensus 207 ~V~~nAa~~L~NLs~~~-~~~R~~i~~~~Gli~~LV~~L~~~-------~~~~--------------------------- 251 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSER-SEARRKLRECDGLVDALIFIVQAE-------IGQK--------------------------- 251 (584)
T ss_dssp HHHHHHHHHHHHHTSSC-HHHHHHHHHSTTHHHHHHHHHHHH-------HHTT---------------------------
T ss_pred HHHHHHHHHHHHHhcCC-HHHHHHHHHcCCcHHHHHHHHHHh-------hccc---------------------------
Confidence 88888887777765422 111111 123555666655320 0000
Q ss_pred CCCccchhhHHHHHHHHHHHHHHH-------------------------cCCchhhhH-HhhhHHHHhhcC-CCCHhHHH
Q psy14676 251 SDDDDMSWKVRRAAAKCLEAIIAT-------------------------RRDLIGDMY-RLVSPPLIARFK-EREENVKS 303 (1827)
Q Consensus 251 sdddD~sWkVRraAak~L~~l~~~-------------------------~~~~l~~~~-~~v~p~L~~~l~-e~ee~VR~ 303 (1827)
+.+.+...-|+-+|..+... .+.-+..++ ..+++.|+..++ ...+.++.
T Consensus 252 ----~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E 327 (584)
T 3l6x_A 252 ----DSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILE 327 (584)
T ss_dssp ----CCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHH
T ss_pred ----CccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHH
Confidence 00002222233333222211 111122222 245677788874 45799999
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChH-hhHHhhh--HHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCccc
Q psy14676 304 DIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPL-CLLSTQV--PSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGC 380 (1827)
Q Consensus 304 aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l--p~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~ 380 (1827)
.|+.|+..++... +.. ..++..+ ...+|.+.+.|..++.+++..+..+|+.|+..-..
T Consensus 328 ~Aa~AL~nL~ag~------------------~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~- 388 (584)
T 3l6x_A 328 ASAGAIQNLCAGR------------------WTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARN- 388 (584)
T ss_dssp HHHHHHHHHHSSC------------------SHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC-
T ss_pred HHHHHHHHHHcCC------------------ccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhH-
Confidence 9999999887321 111 1222222 34588889999999999999999999999864321
Q ss_pred ccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhh
Q psy14676 381 LAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIG 460 (1827)
Q Consensus 381 l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~ 460 (1827)
-...-...+|.+.+.|..... .+. ...+-.+...|+.+|++++....+.-.
T Consensus 389 ~~~I~~g~ip~LV~LL~~~~~----------~~~-------------------~~~s~~v~~~a~~tL~NL~a~~~~~~~ 439 (584)
T 3l6x_A 389 KELIGKHAIPNLVKNLPGGQQ----------NSS-------------------WNFSEDTVISILNTINEVIAENLEAAK 439 (584)
T ss_dssp HHHHHHHHHHHHHHTSSSSSC----------SGG-------------------GTCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhCCHHHHHHHhcCCcc----------ccc-------------------ccchHHHHHHHHHHHHHHhcCCHHHHH
Confidence 111123567888888742100 000 000123677888888888743332222
Q ss_pred hhH-HhhhhhHHHhhcch--hhhhHHHHHHHHHHHHh
Q psy14676 461 DMY-RLVSPPLIARFKER--EENVKSDIFHAYMALLK 494 (1827)
Q Consensus 461 ~~~-~~l~~~L~~~~~d~--~~~Vr~~a~~~l~~L~~ 494 (1827)
..+ ...+|.|...+.+. .+++++.|...|..+..
T Consensus 440 ~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 111 34688888888765 77899999888887753
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.2e-05 Score=92.00 Aligned_cols=178 Identities=13% Similarity=0.079 Sum_probs=142.3
Q ss_pred hhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCh
Q psy14676 257 SWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSP 336 (1827)
Q Consensus 257 sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~ 336 (1827)
+|+-|.+|...|...+...++.+...+.-+++++.-+|.+.+..|-..++..+..++...+....
T Consensus 59 d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y--------------- 123 (266)
T 2of3_A 59 DFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET--------------- 123 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC---------------
T ss_pred CHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc---------------
Confidence 58999999888888777766555556666789998899999999999999999988865542110
Q ss_pred HhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCc
Q psy14676 337 LCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTE 416 (1827)
Q Consensus 337 ~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e 416 (1827)
.........++|.++..+.|...+||..+-.++..+..+.|. ..+.+.+...++
T Consensus 124 -~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~------~~v~~~l~~g~k------------------- 177 (266)
T 2of3_A 124 -PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP------LKMTPMLLDALK------------------- 177 (266)
T ss_dssp -CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH------HHHHHHHHHGGG-------------------
T ss_pred -cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHc-------------------
Confidence 112344678899999999999999999999999999988764 235666666663
Q ss_pred ccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhh---hhHHHhhcchhhhhHHHHHHHHHHHH
Q psy14676 417 EEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVS---PPLIARFKEREENVKSDIFHAYMALL 493 (1827)
Q Consensus 417 ~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~---~~L~~~~~d~~~~Vr~~a~~~l~~L~ 493 (1827)
.+|||.|.+.+..+..+..++|... ...+ |.+.+.+.|+..+||.+|+.++.++-
T Consensus 178 ------------------sKN~R~R~e~l~~l~~li~~~G~~~----~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 178 ------------------SKNARQRSECLLVIEYYITNAGISP----LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp ------------------CSCHHHHHHHHHHHHHHHHHHCSGG----GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred ------------------cCCHHHHHHHHHHHHHHHHhcCCCc----cccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 2589999999999999999999442 3456 88899999999999999999999998
Q ss_pred hhcc
Q psy14676 494 KGTR 497 (1827)
Q Consensus 494 ~~~g 497 (1827)
...|
T Consensus 236 ~~~G 239 (266)
T 2of3_A 236 KFEG 239 (266)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 8777
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=98.30 E-value=5.6e-05 Score=96.77 Aligned_cols=350 Identities=11% Similarity=0.066 Sum_probs=209.8
Q ss_pred hhhhhHHHHHHhhhhh--hhHHHHHHHHHHHhcCCCccccch-h-hhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCC
Q psy14676 1173 ELPVCLPILLDRLRNE--ITRLTTVKALTKIAASPLRIDLRP-I-LTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYP 1248 (1827)
Q Consensus 1173 ~l~~lL~~Ll~~L~~e--~tR~~av~al~~ia~~~~~~dl~p-~-~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~ 1248 (1827)
.....+|.|++.|+.. ..+..|+.+|..++.... +-.. + -...+|.|..+|+..+..++..++.||..|.....
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~--~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~ 122 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRND--KVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRD 122 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSC
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCh--HHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCC
Confidence 3455677788888644 347888899998885321 0011 1 13478999999999999999999999999865211
Q ss_pred CCcChH-hHHHHHHHhhhhcCC-CChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHH---
Q psy14676 1249 SAISTE-MLNKVTVELAPLVSE-SDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILN--- 1323 (1827)
Q Consensus 1249 ~~l~~~-~~~~ll~~L~~ll~d-~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~--- 1323 (1827)
..-... .-.+.++.|..+|.. .+..++..+..+|..++.. +.. ...++ .. .++.++.+++.
T Consensus 123 ~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~--k~~I~-------~~----alp~Lv~LL~~p~s 188 (584)
T 3l6x_A 123 QDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSI--KMEIV-------DH----ALHALTDEVIIPHS 188 (584)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGG--HHHHH-------HH----THHHHHHHTHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chh--hHHHH-------hc----cHHHHHHHHhcccc
Confidence 110011 112467888888875 6788888888888887752 210 00111 00 12333333211
Q ss_pred -----------hcCCCCHhHHHHHHHHHhhhhhhhh---------hhhHHHHHHhhhc-------CchhhHHHHHHHHHH
Q psy14676 1324 -----------AFTPTSEEVKSAASYTLGSIAVGNL---------QQYVPFVLKEIEN-------QPKRQYLLLHSLKEI 1376 (1827)
Q Consensus 1324 -----------~~~~~s~eVr~aAa~aLG~i~~~~l---------~~~LP~Il~~i~~-------~~~~q~~~l~aL~Ei 1376 (1827)
....++++|+.+|+.+|.+++..+- .-..+.++..++. +.+.+..++++|.-+
T Consensus 189 g~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NL 268 (584)
T 3l6x_A 189 GWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNL 268 (584)
T ss_dssp CCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHh
Confidence 1123468999999999999764321 1233455555432 223344455555443
Q ss_pred Hhhcccc--c------------cc-----hhhhhc-hHHHHHHHHhhhhc-CCchhHHHHHHHHHHHhhccC--------
Q psy14676 1377 ISWQSTS--T------------SG-----VAQLQQ-FVPAIWAQLFLHCE-CQEEGTRNVVAECLGKLTLID-------- 1427 (1827)
Q Consensus 1377 i~~~~~s--~------------~g-----~~~L~~-~~~~i~~~L~~~~~-~~~e~vR~~aAecLGkL~~~~-------- 1427 (1827)
-...... . .| ...+.. +-+...+.|+..+. +..+.++..|+.+|..|+...
T Consensus 269 s~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~ 348 (584)
T 3l6x_A 269 SYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIR 348 (584)
T ss_dssp HTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHH
T ss_pred hccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHH
Confidence 2211000 0 00 001111 22334455555553 456789999999999997543
Q ss_pred ----CCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHh
Q psy14676 1428 ----PSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRL 1503 (1827)
Q Consensus 1428 ----p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~ 1503 (1827)
-..-+|.|.+++.+++..++..++.||+++..+.. .-.. +....+|.|+.+
T Consensus 349 ~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~--~~~~-----------------------I~~g~ip~LV~L 403 (584)
T 3l6x_A 349 SALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDAR--NKEL-----------------------IGKHAIPNLVKN 403 (584)
T ss_dssp HHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS--CHHH-----------------------HHHHHHHHHHHT
T ss_pred HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh--HHHH-----------------------HHhCCHHHHHHH
Confidence 12458999999999999999999999999986432 1111 124577999999
Q ss_pred hcCC--------chHHHHHHHHHhhhhhhhhhhhhHH-----HHHHHHHhhhcccccccccCCccchhHHHHHHHhhhhc
Q psy14676 1504 LEDK--------NGEVQNLAVKCLGPLVNKVKEFQVE-----TIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDR 1570 (1827)
Q Consensus 1504 l~D~--------~~~Vr~~a~~~Lg~L~~~l~~~~~~-----~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~ 1570 (1827)
|.++ ...++..|..+|+.|+..- .+... ..|..|..-+.+.+ .+..+++.|..+|..+..
T Consensus 404 L~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~-~~~~~~I~~~g~I~~Lv~LL~s~~------~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 404 LPGGQQNSSWNFSEDTVISILNTINEVIAEN-LEAAKKLRETQGIEKLVLINKSGN------RSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp SSSSSCSGGGTCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHTCSS------SCHHHHHHHHHHHHHHHT
T ss_pred hcCCcccccccchHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCC------CChHHHHHHHHHHHHHHc
Confidence 8876 3578899999999887432 22222 23344444443321 112789999999987764
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.0026 Score=82.73 Aligned_cols=529 Identities=11% Similarity=0.106 Sum_probs=286.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHH-Hh--hhhhhhHHHHHHHHHHHhcCCCccccchhhh-hhHhhh
Q psy14676 1146 DIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILL-DR--LRNEITRLTTVKALTKIAASPLRIDLRPILT-DGIPIL 1221 (1827)
Q Consensus 1146 D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll-~~--L~~e~tR~~av~al~~ia~~~~~~dl~p~~~-~~l~~L 1221 (1827)
-...+||.-++-.+.++.+..++.....+...+..++ +. -........++.++..+-......--.-|+. ...+.+
T Consensus 181 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l 260 (778)
T 3opb_A 181 ISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLF 260 (778)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHH
T ss_pred cChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHH
Confidence 3468899999999999999888777677777666554 11 1122335666666665532111000001111 123334
Q ss_pred hhhh-cchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHh
Q psy14676 1222 GSFL-RKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAAS 1300 (1827)
Q Consensus 1222 ~~~L-rk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~ 1300 (1827)
.+.+ ++.+..+..++++.|...+..-. .-.-.....+++|..++.. .+++..++.+|+++......
T Consensus 261 ~~~~~~~~~~~~~~a~L~lLsaACi~~~--cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~--------- 327 (778)
T 3opb_A 261 KKRVFEEQDLQFTKELLRLLSSACIDET--MRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKL--------- 327 (778)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHCCSHH--HHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTC---------
T ss_pred HHHHhcccchHHHHHHHHHHHHHhCCcH--HHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCC---------
Confidence 3333 22345566677776665433111 1111334566777777754 47888888888877653210
Q ss_pred hhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhh--------hhhhhHHHHHHhhhc--CchhhHHHH
Q psy14676 1301 ILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVG--------NLQQYVPFVLKEIEN--QPKRQYLLL 1370 (1827)
Q Consensus 1301 ~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~--------~l~~~LP~Il~~i~~--~~~~q~~~l 1370 (1827)
...++.++.+.+.+.|.++..+.|..|..+|+-+... .-+.+++.+++.++. .....|-++
T Consensus 328 ---------~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal 398 (778)
T 3opb_A 328 ---------TCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLL 398 (778)
T ss_dssp ---------TTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHH
T ss_pred ---------CcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHH
Confidence 0123467999999999987777788898888865432 224578888888764 233444444
Q ss_pred HHHHHHHhhccc-c--ccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHH-HhhccCCCcchHHHHHhhhcCCHHH
Q psy14676 1371 HSLKEIISWQST-S--TSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLG-KLTLIDPSNLLPRLQESLKSNSALM 1446 (1827)
Q Consensus 1371 ~aL~Eii~~~~~-s--~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLG-kL~~~~p~~~lP~L~~~l~~~~~~~ 1446 (1827)
..|.-+...... + +.+-..|++|...=.|.- ...+..-.-.+...- +-..+.-...+|.|..+++++++.+
T Consensus 399 ~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~-----~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~ 473 (778)
T 3opb_A 399 VIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAA-----DKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNC 473 (778)
T ss_dssp HHHHHTTCCCCCCCCCCC-----------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHH
T ss_pred HHHHHhcCCCcccchhhhhhhhhhhhccccCccc-----CcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHH
Confidence 433333221000 0 001123444543211100 001110011111111 1112233468899999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchH---HHHHHHHHhhhhh
Q psy14676 1447 RTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGE---VQNLAVKCLGPLV 1523 (1827)
Q Consensus 1447 R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~---Vr~~a~~~Lg~L~ 1523 (1827)
|..++.+|..+-.+. ..| ..+ +.+..++.++.++...... +|.+|+.+|.++.
T Consensus 474 re~A~~aL~nLS~d~------~~R-------------~~l-----vqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLl 529 (778)
T 3opb_A 474 KQQVVRIIYNITRSK------NFI-------------PQL-----AQQGAVKIILEYLANKQDIGEPIRILGCRALTRML 529 (778)
T ss_dssp HHHHHHHHHHHHTSG------GGH-------------HHH-----HHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCH------HHH-------------HHH-----HHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence 999999999886431 112 000 1234568888888777554 8999999999998
Q ss_pred hhhhhhh------HHHHHHHHHhhhcccccccc-cCCc---c-ch-hHHHHHHHhhhhccC-C--CCcccchhhhhh--h
Q psy14676 1524 NKVKEFQ------VETIVDALCSNMVSDKEQLR-DISS---I-GL-KTVISVVYCLGDRNS-S--SNMKIDTLAFTH--T 1586 (1827)
Q Consensus 1524 ~~l~~~~------~~~~v~~l~~~l~~~~~~~~-~~~~---~-~v-Rr~Al~~l~s~a~~~-p--~li~~~~~~~~~--~ 1586 (1827)
-..+... ....|.||+.-+..+..... +..+ . .. ++-|+.||.-.|... + +-++ ..+-+ .
T Consensus 530 is~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r---~~Ii~~~g 606 (778)
T 3opb_A 530 IFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVC---KHIVSTKV 606 (778)
T ss_dssp HTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHH---HHHHHSHH
T ss_pred hcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHH---HHHHHhcC
Confidence 5443222 12567777776653211000 0000 0 11 667777765555432 1 1110 00001 1
Q ss_pred hcccCCcccccccccccCCcchhccccceeeeccCcccccccCchhhhhHHHHHHHHHhhhhc---cC-C--hHH---HH
Q psy14676 1587 LLTTHPPAVFHPHIHILLPPVIIIKTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTCLD---RV-D--MFE---FL 1657 (1827)
Q Consensus 1587 ~l~~llp~l~~~~~~~~~~~t~~~~~lir~v~mgpfkh~vddgl~~Rk~a~e~~~~ll~~~~~---~~-~--~~~---~~ 1657 (1827)
.++.+...++ ++.-.+|++|.||+-.|..+... ++ + .+. -+
T Consensus 607 a~~~L~~LL~------------------------------s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL 656 (778)
T 3opb_A 607 YWSTIENLML------------------------------DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNF 656 (778)
T ss_dssp HHHHHHHGGG------------------------------CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHH
T ss_pred HHHHHHHHHh------------------------------CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccH
Confidence 2222222222 34557999999999999974332 22 1 011 14
Q ss_pred HHHHhhccc-hhhHHHHHHHHHHHHHhhChHHHHHHH--HHhhHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHH
Q psy14676 1658 NHLESGLRD-HYDIKMLTYLMLARLAQMTPAALLQRL--ERIVEPLRNTVTLKVKANSVKQEYEKQDELKRSAMRAVAAL 1734 (1827)
Q Consensus 1658 ~~~~~gl~d-~~dik~l~~~~l~~l~~~~p~~~~~~l--~~l~~~~~~~l~~~~k~~~~kqe~e~~~e~~~s~~r~~~~l 1734 (1827)
..++.-++. +.++|.-+.-.|.-+..-+|.....-+ ...++.|-..|... ...++++..++-++..|
T Consensus 657 ~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~----------~~~~~l~~R~~~~l~NL 726 (778)
T 3opb_A 657 NILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQ----------IDDIELRQRLLMLFFGL 726 (778)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHT----------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhcc----------CCCHHHHHHHHHHHHHH
Confidence 556655544 557888888888888777776543323 35667776666532 12458888888888888
Q ss_pred hcccCCCCC-hhHHHHHHHHhCCchHHHHHHHHhcccCC
Q psy14676 1735 LTIQDADKN-PALNDFVATIKNSPELQTIFDSMQKDSSL 1772 (1827)
Q Consensus 1735 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1772 (1827)
....+.+.. ..|..| ..++.++.-...|.+.++.
T Consensus 727 ~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~lk~~~~ 761 (778)
T 3opb_A 727 FEVIPDNGTNEVYPLL----QENQKLKDALNMSLKRGDS 761 (778)
T ss_dssp HTTCCSTTTTSCCHHH----HSCHHHHHHHHHHHSSSSS
T ss_pred HHhhccCCChHHHHHH----hcChHHHHHHHHHHhCCCc
Confidence 765444443 445544 4677788888888877744
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=7.2e-05 Score=93.53 Aligned_cols=255 Identities=11% Similarity=0.022 Sum_probs=164.9
Q ss_pred HHHHHHhhhcccC-------CCCchHHHHHHhcc-----------CChhhHHHHHHHHHHHHHhccccccccccchhhhh
Q psy14676 1019 VVAECLGKLTLID-------PSNLLPRLQESLKS-----------NSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIY 1080 (1827)
Q Consensus 1019 ~a~e~Lg~L~~~~-------~~~llP~L~~~L~s-----------~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~ 1080 (1827)
.|+.+|++++.-. -...+|.|.+.+.. .+...+..+++.|.-+....... +.. +
T Consensus 167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~-k~~-------i 238 (458)
T 3nmz_A 167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVAN-KAT-------L 238 (458)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHH-HHH-------H
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCccc-HHH-------H
Confidence 4566676664331 13468888888842 23567889999999766543211 100 0
Q ss_pred hhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHH--HHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy14676 1081 SFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTS--DIYQCTLVRLKAADIDQEVKERAISC 1158 (1827)
Q Consensus 1081 ~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~--~l~~~ll~~L~~~D~d~eVre~Ai~a 1158 (1827)
......+|.++..+..+++.++..|.++++.|... .....+..+. ..++.++..|. ...+.++++.|+.+
T Consensus 239 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-------~~~~~k~~I~~~GaI~~LV~lLl-~s~~~~v~~~A~~a 310 (458)
T 3nmz_A 239 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-------ADVNSKKTLREVGSVKALMECAL-EVKKESTLKSVLSA 310 (458)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSS-------CCHHHHHHHHHTTHHHHHHHHHT-TCCSHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHcCCHHHHHHHHh-cCCCHHHHHHHHHH
Confidence 11345789999999999999999999998887621 0011112221 23455555544 24578999999999
Q ss_pred HHHHHHHhhhhhhhh---hhhhHHHHHHhhhhhh------hHHHHHHHHHHHhcC--CCccccchhh-hhhHhhhhhhhc
Q psy14676 1159 MGQIICNLGDYLKSE---LPVCLPILLDRLRNEI------TRLTTVKALTKIAAS--PLRIDLRPIL-TDGIPILGSFLR 1226 (1827)
Q Consensus 1159 lg~l~~~~g~~l~~~---l~~lL~~Ll~~L~~e~------tR~~av~al~~ia~~--~~~~dl~p~~-~~~l~~L~~~Lr 1226 (1827)
++.+.....+ .... ....+|.|++.++... .+..|+.+|..++.. .....-..+. ..+++.|..+|+
T Consensus 311 L~nLs~~~~~-nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~ 389 (458)
T 3nmz_A 311 LWNLSAHCTE-NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK 389 (458)
T ss_dssp HHHHHHHCHH-HHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSS
T ss_pred HHHHccCCHH-HHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHc
Confidence 9999874322 1222 2458899998887432 466777777777641 1111111111 346888999999
Q ss_pred chhHHHHHHHHHHHHHHHHhCCCCcChH-hHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCC
Q psy14676 1227 KNQRALKLSTLLLLDTLLVNYPSAISTE-MLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPN 1291 (1827)
Q Consensus 1227 k~~r~lR~~al~aL~~L~~~~~~~l~~~-~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~ 1291 (1827)
..+..++..++.+|..+....... ... .-.+.++.|..++...+..++..+..+|..++...|.
T Consensus 390 ~~~~~v~~~A~~aL~nLa~~~~~~-~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 390 SHSLTIVSNACGTLWNLSARNPKD-QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp CSCHHHHHHHHHHHHHHHSSCHHH-HHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred CCChHHHHHHHHHHHHHHcCCHHH-HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence 888889999999999987421110 011 1235788899999999999999999999999987664
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=9.5e-05 Score=92.48 Aligned_cols=294 Identities=12% Similarity=0.128 Sum_probs=189.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhhh-----------hhhhhHHHHHHhhhhh----h-----hH-------HHHHHHHH
Q psy14676 1147 IDQEVKERAISCMGQIICNLGDYLKS-----------ELPVCLPILLDRLRNE----I-----TR-------LTTVKALT 1199 (1827)
Q Consensus 1147 ~d~eVre~Ai~alg~l~~~~g~~l~~-----------~l~~lL~~Ll~~L~~e----~-----tR-------~~av~al~ 1199 (1827)
.+++++..|..|+..|+....+.... .++...+.+++-+... + .| ..|+.+|+
T Consensus 94 ~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~ 173 (458)
T 3nmz_A 94 GSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLM 173 (458)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHH
Confidence 35799999999999999876443221 1122223333333322 1 12 38999999
Q ss_pred HHhcCCCccccchhh--hhhHhhhhhhhcc-----------hhHHHHHHHHHHHHHHHHhCCCCcChHh---HHHHHHHh
Q psy14676 1200 KIAASPLRIDLRPIL--TDGIPILGSFLRK-----------NQRALKLSTLLLLDTLLVNYPSAISTEM---LNKVTVEL 1263 (1827)
Q Consensus 1200 ~ia~~~~~~dl~p~~--~~~l~~L~~~Lrk-----------~~r~lR~~al~aL~~L~~~~~~~l~~~~---~~~ll~~L 1263 (1827)
.++... +.+..+ ..+++.|..++.. .+..++..+..+|..|...... .... ..+.+|.|
T Consensus 174 nls~~~---e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~--~k~~i~~~~GaIp~L 248 (458)
T 3nmz_A 174 KLSFDE---EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA--NKATLCSMKGCMRAL 248 (458)
T ss_dssp HHTTSH---HHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHCHHHHHHH
T ss_pred HhcCCH---HHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcc--cHHHHHHcCCcHHHH
Confidence 986532 112222 2467778888742 3466889999999998764211 1112 24678999
Q ss_pred hhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHh-cCCCCHhHHHHHHHHHhh
Q psy14676 1264 APLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNA-FTPTSEEVKSAASYTLGS 1342 (1827)
Q Consensus 1264 ~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~-~~~~s~eVr~aAa~aLG~ 1342 (1827)
..++...|..++..+..+|..++..... .....+.+ ...++.+++. +.+.+++++..|+.+|++
T Consensus 249 V~LL~s~~~~v~~~A~~aL~nLs~~~~~-----~~k~~I~~----------~GaI~~LV~lLl~s~~~~v~~~A~~aL~n 313 (458)
T 3nmz_A 249 VAQLKSESEDLQQVIASVLRNLSWRADV-----NSKKTLRE----------VGSVKALMECALEVKKESTLKSVLSALWN 313 (458)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHTSSCCH-----HHHHHHHH----------TTHHHHHHHHHTTCCSHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhcCCCH-----HHHHHHHH----------cCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999887642100 00000001 1345666665 456788999999999999
Q ss_pred hhhh---h------hhhhHHHHHHhhhcCc-----hhhHHHHHHHHHHHhhccccccchhhhhch-H-HHHHHHHhhhhc
Q psy14676 1343 IAVG---N------LQQYVPFVLKEIENQP-----KRQYLLLHSLKEIISWQSTSTSGVAQLQQF-V-PAIWAQLFLHCE 1406 (1827)
Q Consensus 1343 i~~~---~------l~~~LP~Il~~i~~~~-----~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~-~-~~i~~~L~~~~~ 1406 (1827)
++.. + ....+|.+++.+.... +.+....++|.-+-.+.+. ....+.. . ....+.|++.+.
T Consensus 314 Ls~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~----~~~~~~~i~~~G~i~~Lv~LL~ 389 (458)
T 3nmz_A 314 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT----NEDHRQILRENNCLQTLLQHLK 389 (458)
T ss_dssp HHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHTTHHHHHHHHSS
T ss_pred HccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccC----CHHHHHHHHHcccHHHHHHHHc
Confidence 7652 2 1246788888886532 1345556666665431111 1221111 1 124566777776
Q ss_pred CCchhHHHHHHHHHHHhhccCCC--------cchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCC
Q psy14676 1407 CQEEGTRNVVAECLGKLTLIDPS--------NLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTS 1464 (1827)
Q Consensus 1407 ~~~e~vR~~aAecLGkL~~~~p~--------~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~ 1464 (1827)
+.+..++..|+.+|+.|+..+++ ..+|.|.+++++.++.+|..+..||+.+..+.+..
T Consensus 390 ~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~k 455 (458)
T 3nmz_A 390 SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 455 (458)
T ss_dssp CSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSCC
T ss_pred CCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHhh
Confidence 77778999999999999976543 56899999999999999999999999999876544
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=98.15 E-value=0.013 Score=79.93 Aligned_cols=122 Identities=14% Similarity=0.180 Sum_probs=85.2
Q ss_pred HHHhhccCC-CCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccC---CCCHHHHHHHH
Q psy14676 64 DLLSRFGAL-LPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTT---NKSTSTNRTYI 139 (1827)
Q Consensus 64 ~l~~~~~~~-l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~---~~~~~~r~~ai 139 (1827)
-+..+.+.- ..+.+..++.-++..-.+.=+.||+.|..++.+.....+.. ...+++.+++.|.. +.+.+.-+.++
T Consensus 117 R~~~~~~~r~~t~l~~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs-~~~iip~ll~~L~~~~~~~~~~~iKGaL 195 (997)
T 1vsy_5 117 RVLLHSTNRKASKLENLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGS-YGVVINKIIPSLEKAIKDHDYMKIQVIL 195 (997)
T ss_dssp HHHHSCCCBCCCSHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTH-HHHHHHHHHHHHHHHHHTCSCHHHHHHH
T ss_pred HHHhhccccCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHhccccCCCHHHHHHHH
Confidence 333344443 55577888988988777888999999999999999987654 35567777777744 44556667777
Q ss_pred HHHH--HHHHHhchhhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHH
Q psy14676 140 QCFA--AICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFV 187 (1827)
Q Consensus 140 ~~l~--~la~~~~~~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~ 187 (1827)
.+|. .+......... ++..++|.+++....+.++++..+-.++..++
T Consensus 196 y~L~~k~~~~~~~~d~~-~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~ 244 (997)
T 1vsy_5 196 NVLLIKKIHRKLMTDYK-DIGRLIFLLIECCRVNELEIGMYADKILTDIV 244 (997)
T ss_dssp HHTTSHHHHHHGGGCHH-HHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHH
T ss_pred HHHhhhhhhhHHhcChH-HHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHH
Confidence 7766 56555554433 67788899998887778887766554444443
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1.3e-05 Score=89.67 Aligned_cols=180 Identities=17% Similarity=0.140 Sum_probs=130.6
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHH
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVIL 81 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il 81 (1827)
+++.++|..++.+|..+...-+. ....-+....+|.|++.+.++ ++.++..|+.+|+.++......... .....+
T Consensus 23 s~~~~v~~~a~~~L~~l~~~~~~---~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i 98 (210)
T 4db6_A 23 SPDQQELQSALRKLSQIASGGNE---QIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGAL 98 (210)
T ss_dssp CSCHHHHHHHHHHHHHHHTSCHH---HHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHH---HHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCH
Confidence 55678999999999988744322 112223346789999999765 8999999999999997533221111 112367
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh---HH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHh-
Q psy14676 82 TALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ---LY-TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEH- 156 (1827)
Q Consensus 82 ~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~---~~-~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~- 156 (1827)
+.++..|+++++.||+.|+.+|++++...++. .+ ...++.++..|.. ++..+++.++.+|+.++...+......
T Consensus 99 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~ 177 (210)
T 4db6_A 99 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQKQAVK 177 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 88999999999999999999999999754332 11 2356777777765 468899999999999997644332221
Q ss_pred HHHHHHHHHhhcccCchHHHHHHHHHHHHHH
Q psy14676 157 IERVMPLILKYSREEDDELREFCLQACEAFV 187 (1827)
Q Consensus 157 l~~i~p~l~~~~~~~~delRe~al~ale~~~ 187 (1827)
-...+|.+.+.++++++++|+.|..++..+.
T Consensus 178 ~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 178 EAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 2368899999999899999999999887764
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00015 Score=85.53 Aligned_cols=178 Identities=10% Similarity=0.129 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHHhhcc--CCCCchhHHHHHHHhh-hcCCCCHHHHHHHHHHHHHHHHhhch---hHHH-HHHHHHHH
Q psy14676 52 VSVQLEALDILSDLLSRFG--ALLPSFHFVILTALLP-QLSSPRQAVRKRTIVALSHLVMSCNL---QLYT-KLIDFLLE 124 (1827)
Q Consensus 52 ~~v~~~al~iL~~l~~~~~--~~l~~~~~~il~~ll~-~L~~~~~~VRk~Ai~aL~~l~~~~~~---~~~~-~l~~~ll~ 124 (1827)
..-|..|++.|.++++... ..+ ...-.++.+++ .|.++++.||..|+.+|+.++..-+. ..+. ..++.|+.
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~--~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADF--CQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHH--HHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHH--HHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 4578899999999988542 211 11134677888 99999999999999999999975332 1221 35677887
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHHhchhhHHhH-HHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccch--HHH
Q psy14676 125 GLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHI-ERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHI--QSI 201 (1827)
Q Consensus 125 ~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l-~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l--~~i 201 (1827)
.|.++.+..+|+.++.+|+.+++..+....... ...+|.+...++..+..+|..|..++..++..-++ ...++ ..+
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~-~~~~vv~~g~ 210 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPE-HKGTLCSMGM 210 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHTTH
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChH-HHHHHHHcCC
Confidence 776555688999999999999986554332222 36888999888888999999999999888876333 22222 246
Q ss_pred HHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcC
Q psy14676 202 TELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR 276 (1827)
Q Consensus 202 i~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~ 276 (1827)
++.+...+... +.+||..|+.+|+.++...+
T Consensus 211 i~~Lv~LL~~~--------------------------------------------d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 211 VQQLVALVRTE--------------------------------------------HSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HHHHHHHHTSC--------------------------------------------CSTHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCC--------------------------------------------ChhHHHHHHHHHHHHHhCCh
Confidence 67777766431 01589999999999987633
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.95 E-value=8.1e-05 Score=87.44 Aligned_cols=200 Identities=15% Similarity=0.167 Sum_probs=136.9
Q ss_pred hHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHH
Q psy14676 1036 LPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKV 1115 (1827)
Q Consensus 1036 lP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~ 1115 (1827)
+| +.+.+.+.+|+.|.+++.-+..+....+....+ ....+.+..+.+.+...+.|.+..|...++.++..++..
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~ 85 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISR-----DDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDA 85 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC---------------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTT
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccc-----hhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 55 678899999999999999888444432211100 011122556778888899999999999999999999875
Q ss_pred hccCCCCCCCCcchhHHHHHHHHHHH-HhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHH
Q psy14676 1116 IRPLTSPSSYDFAPFTSDIYQCTLVR-LKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTT 1194 (1827)
Q Consensus 1116 l~~~~~~~~~~~~~~l~~l~~~ll~~-L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~a 1194 (1827)
+.+.. .....+..++..+++.++.+ +. |....+|+.|+.++-.++...+.
T Consensus 86 ~~~~~-~~~~~~~~~~~~~l~~lveK~l~--~~k~~~~~~a~~~l~~~~~~~~~-------------------------- 136 (278)
T 4ffb_C 86 FASSS-LKNAHNITLISTWTPLLVEKGLT--SSRATTKTQSMSCILSLCGLDTS-------------------------- 136 (278)
T ss_dssp CC----CCHHHHHHHHHHHHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHTSSS--------------------------
T ss_pred hhhhh-cccchhHHHHHHHHHHHHHHHhc--CccHHHHHHHHHHHHHHHHhcCc--------------------------
Confidence 44210 00111334567777777776 44 67788888888888776653321
Q ss_pred HHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCC-cCh-HhHHHHHHHhhhhcCCCCh
Q psy14676 1195 VKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSA-IST-EMLNKVTVELAPLVSESDL 1272 (1827)
Q Consensus 1195 v~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~-l~~-~~~~~ll~~L~~ll~d~D~ 1272 (1827)
...+++.+...+...++.+|..++..|..++..+|.. +++ ..+..+++.+..++.|.|.
T Consensus 137 -------------------~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~ 197 (278)
T 4ffb_C 137 -------------------ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDR 197 (278)
T ss_dssp -------------------SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSH
T ss_pred -------------------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcH
Confidence 0112333444455556788999999999999988765 443 3567788888999999999
Q ss_pred hHHHHHHHHHHHHHHhC
Q psy14676 1273 HIAQLTLTLLTSIAKIQ 1289 (1827)
Q Consensus 1273 ~l~~~al~~L~~l~~~~ 1289 (1827)
.||..+..++..+....
T Consensus 198 ~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 198 NVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999998887643
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00012 Score=86.33 Aligned_cols=180 Identities=12% Similarity=0.138 Sum_probs=124.8
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHH-hhhhhh--hHHHHHHHHHHHhcCCCccccch-hh-hhhHhhhh
Q psy14676 1148 DQEVKERAISCMGQIICNLGDYLKSELPVCLPILLD-RLRNEI--TRLTTVKALTKIAASPLRIDLRP-IL-TDGIPILG 1222 (1827)
Q Consensus 1148 d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~-~L~~e~--tR~~av~al~~ia~~~~~~dl~p-~~-~~~l~~L~ 1222 (1827)
+.+-|..|+..|..++......-.=.-...+|.|+. .|++.. .|..|+.++|.++..... ... ++ ..+++.|.
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~--~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAA--IQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHH--HHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH--HHHHHHHCCCHHHHH
Confidence 346688888888888865421100011235677888 666543 499999999999964211 111 12 35788899
Q ss_pred hhhcch-hHHHHHHHHHHHHHHHHhCCCCcChHhH-HHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHh
Q psy14676 1223 SFLRKN-QRALKLSTLLLLDTLLVNYPSAISTEML-NKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAAS 1300 (1827)
Q Consensus 1223 ~~Lrk~-~r~lR~~al~aL~~L~~~~~~~l~~~~~-~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~ 1300 (1827)
.+|+.. +..+|..++.||..++.+.+.... ... ...++.|..++.+.|..++.-++.+|+.++...+....
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~-~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~------ 203 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEAGLL-QFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKG------ 203 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHH-HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHH------
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcHHHH-HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHH------
Confidence 999853 678999999999999875432111 111 24677888888999999999999999999886442110
Q ss_pred hhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhh
Q psy14676 1301 ILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVG 1346 (1827)
Q Consensus 1301 ~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~ 1346 (1827)
.+ ....+++.+...+.+++.+|+..|+.+||++..+
T Consensus 204 ---~v-------v~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 204 ---TL-------CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp ---HH-------HHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred ---HH-------HHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 00 0134778888889999999999999999998765
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00038 Score=79.74 Aligned_cols=189 Identities=14% Similarity=0.125 Sum_probs=133.1
Q ss_pred CchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHH
Q psy14676 1034 NLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFV 1113 (1827)
Q Consensus 1034 ~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv 1113 (1827)
.+-+.+...+-+.+++.|..++..|.......+. .+...++-+++-+.-.+.|.++.|...++..+..++
T Consensus 46 ~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~----------~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~ 115 (266)
T 2of3_A 46 QAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPR----------SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIV 115 (266)
T ss_dssp TBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH----------HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChH----------HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3456667777788899999999988844333222 223336666676665677999999999999999999
Q ss_pred HHhccCCCCCCCCcchh-HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHH
Q psy14676 1114 KVIRPLTSPSSYDFAPF-TSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRL 1192 (1827)
Q Consensus 1114 ~~l~~~~~~~~~~~~~~-l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~ 1192 (1827)
..+.. .+..+..| ...++|.++.++. |....||+.+...+..+....+. ..+++.++
T Consensus 116 ~~l~~----~~y~~~~~ea~~~lP~LveKlG--d~k~~vR~~~r~il~~l~~v~~~------~~v~~~l~---------- 173 (266)
T 2of3_A 116 ELIRD----TETPMSQEEVSAFVPYLLLKTG--EAKDNMRTSVRDIVNVLSDVVGP------LKMTPMLL---------- 173 (266)
T ss_dssp HHHHH----TTCCCCHHHHHHHHHHHHHGGG--CSSHHHHHHHHHHHHHHHHHHCH------HHHHHHHH----------
T ss_pred HHHHh----ccccchHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHCCH------HHHHHHHH----------
Confidence 88763 12345555 5788999999998 88899999999988776654322 11222222
Q ss_pred HHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHH---HHhhhhcCC
Q psy14676 1193 TTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVT---VELAPLVSE 1269 (1827)
Q Consensus 1193 ~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll---~~L~~ll~d 1269 (1827)
..++..++..|..++..+..++..+|.. +. ..+ +.+..+++|
T Consensus 174 ------------------------------~g~ksKN~R~R~e~l~~l~~li~~~G~~--~~---~~l~~~~~ia~ll~D 218 (266)
T 2of3_A 174 ------------------------------DALKSKNARQRSECLLVIEYYITNAGIS--PL---KSLSVEKTVAPFVGD 218 (266)
T ss_dssp ------------------------------HGGGCSCHHHHHHHHHHHHHHHHHHCSG--GG---GGGCHHHHHGGGGGC
T ss_pred ------------------------------HHHccCCHHHHHHHHHHHHHHHHhcCCC--cc---ccccchHHHHHHHcC
Confidence 2223334677888888888888877765 21 235 778889999
Q ss_pred CChhHHHHHHHHHHHHHHhC
Q psy14676 1270 SDLHIAQLTLTLLTSIAKIQ 1289 (1827)
Q Consensus 1270 ~D~~l~~~al~~L~~l~~~~ 1289 (1827)
.|..||..|+.++..+....
T Consensus 219 ~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 219 KDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp SSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 99999999998888777643
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00033 Score=84.87 Aligned_cols=228 Identities=12% Similarity=0.130 Sum_probs=147.8
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHHHHHhcCCCccccchh
Q psy14676 1134 IYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIAASPLRIDLRPI 1213 (1827)
Q Consensus 1134 l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~av~al~~ia~~~~~~dl~p~ 1213 (1827)
+++.++..|- |...|+|--|..++.+++...|...+.. ++. |. -.|+|.+-.++-
T Consensus 175 fcE~L~~DLF--dp~WEiRHGAALGLREILR~hG~GAGR~---------~~~-N~---DLAvRLLCVLAL---------- 229 (800)
T 3oc3_A 175 FFEQISDNLL--SYEWYKRHGAFLAFAAMFSEIDNGGDIQ---------IRV-DS---KLFSKIYEILVT---------- 229 (800)
T ss_dssp TTHHHHHHTT--CSSHHHHHHHHHHHHHHHHHCC----CC---------CCC-CT---THHHHHHHHHHH----------
T ss_pred HHHHHHHHhc--CcchhhhhHHHHHHHHHHHHhccCCcee---------ccc-cH---HHHHHHHHHHHh----------
Confidence 6667777776 8899999999999999999887522211 111 11 233333333331
Q ss_pred hhhhHhhhhhhhcch-hHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCc
Q psy14676 1214 LTDGIPILGSFLRKN-QRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNA 1292 (1827)
Q Consensus 1214 ~~~~l~~L~~~Lrk~-~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~ 1292 (1827)
..++.|..+. -..+|.++..+|+.+ ...+... .++..|...+....++++..++..|..+ .
T Consensus 230 -----DRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e~------~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~----- 291 (800)
T 3oc3_A 230 -----DKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGPN------DIIEQLVGFLDSGDWQVQFSGLIALGYL-K----- 291 (800)
T ss_dssp -----BCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCSC------CHHHHHTTGGGCSCHHHHHHHHHHHHHT-G-----
T ss_pred -----ccccccccCeeeeehHHHHHHHHHHH-HhCChhH------HHHHHHHhhcCCCCeeehhhhHHHHHHH-H-----
Confidence 1122222222 146889999999998 6655542 3455555667888999999999888776 1
Q ss_pred cchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhcCchhhHHHHHH
Q psy14676 1293 LVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIENQPKRQYLLLHS 1372 (1827)
Q Consensus 1293 ~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~~~~~q~~~l~a 1372 (1827)
++-. ..+.+.+.++.+|.|.++|||..||.+|-.++ .+..++.+++.+ +.+
T Consensus 292 -----------DLL~-----~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA---~p~~l~~LL~iL----------Wd~ 342 (800)
T 3oc3_A 292 -----------EFVE-----DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP---ITDSLDLVLEKC----------WKN 342 (800)
T ss_dssp -----------GGCC-----CHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC---CSSTHHHHHHHH----------HHH
T ss_pred -----------HHHH-----HHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc---chhhHHHHHHHH----------HHH
Confidence 1100 14789999999999999999999999998877 233455554432 222
Q ss_pred HHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHH
Q psy14676 1373 LKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLT 1452 (1827)
Q Consensus 1373 L~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~ 1452 (1827)
|.+. ++|.+....+++.|.+.|..+. -+..+| .++|+|-.++.+.-+.+|.+++.
T Consensus 343 L~~L-----------DDLSASTgSVMdLLAkL~s~p~-------------~a~~dp-~LVPRL~PFLRHtITSVR~AVL~ 397 (800)
T 3oc3_A 343 IESE-----------ELISVSKTSNLSLLTKIYRENP-------------ELSIPP-ERLKDIFPCFTSPVPEVRTSILN 397 (800)
T ss_dssp HHTC-----------CSCCTTHHHHHHHHHHHHHHCT-------------TCCCCS-GGGGGTGGGGTCSSHHHHHHHHH
T ss_pred hhhh-----------cccchhhHHHHHHHHHHHcCCc-------------ccccCh-HHHHHHHhhhcCCcHHHHHHHHH
Confidence 3222 2233444555565555543331 122344 88999999999999999999999
Q ss_pred HHHHHh
Q psy14676 1453 AVKFTI 1458 (1827)
Q Consensus 1453 Alk~~~ 1458 (1827)
++..++
T Consensus 398 TL~tfL 403 (800)
T 3oc3_A 398 MVKNLS 403 (800)
T ss_dssp HTTTCC
T ss_pred HHHHHH
Confidence 988776
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00069 Score=81.29 Aligned_cols=305 Identities=13% Similarity=0.139 Sum_probs=161.6
Q ss_pred hhHHHHHHHHHHHHHHHcCCchhh-hHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCh
Q psy14676 258 WKVRRAAAKCLEAIIATRRDLIGD-MYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSP 336 (1827)
Q Consensus 258 WkVRraAak~L~~l~~~~~~~l~~-~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~ 336 (1827)
.|.|.+..|.|..+.. |+.|.. -...+.+.+++.+...+-..|.-+...+..+.+..
T Consensus 42 ~kc~~~l~kll~l~~~--G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-------------------- 99 (355)
T 3tjz_B 42 RKCAHILTKILYLINQ--GEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-------------------- 99 (355)
T ss_dssp HHHHHHHHHHHHHHHH--TCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS--------------------
T ss_pred HHHHHHHHHHHHHHHC--CCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH--------------------
Confidence 4666677777766554 333322 34567788889999999999999888887665320
Q ss_pred HhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCc
Q psy14676 337 LCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTE 416 (1827)
Q Consensus 337 ~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e 416 (1827)
+..+ -++..+.+-+.++++-+|-.+++.++.+.. ...++.+.+.+.+++.|
T Consensus 100 ----~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~------~~m~~~l~~~lk~~L~d------------------ 150 (355)
T 3tjz_B 100 ----EDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD------STMLQAIERYMKQAIVD------------------ 150 (355)
T ss_dssp ----SCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC------TTTHHHHHHHHHHHHTC------------------
T ss_pred ----HHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC------HHHHHHHHHHHHHHcCC------------------
Confidence 0112 456778888999999999999977766642 34567888999999854
Q ss_pred ccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhc
Q psy14676 417 EEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGT 496 (1827)
Q Consensus 417 ~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~ 496 (1827)
.+.-||.+|+-|...++...++.... .++.+...+.|+.+-|-..|+..+.++.+.-
T Consensus 151 -------------------~~pyVRk~A~l~~~kL~~~~pe~v~~----~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 151 -------------------KVPSVSSSALVSSLHLLKCSFDVVKR----WVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp -------------------SSHHHHHHHHHHHHHHTTTCHHHHHT----THHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred -------------------CCHHHHHHHHHHHHHHhccCHHHHHH----HHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence 34559999999999888777765544 3445566778888888887887777765321
Q ss_pred ccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhh-hHHhHHHHHHHhhcCCCccccccchHHHHHHHhh
Q psy14676 497 RTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIR-TRQDCLALLRELMTSSDKDFRFMATNDLMSELQK 575 (1827)
Q Consensus 497 g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~-~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~ 575 (1827)
+ . .+..+...+.....+ .+..|. ++..+.
T Consensus 208 ~------------------------~----a~~kLv~~l~~~~l~~~~~q~~---------------------llr~l~- 237 (355)
T 3tjz_B 208 R------------------------L----AVSKMISKFTRHGLKSPFAYCM---------------------MIRVAS- 237 (355)
T ss_dssp H------------------------H----HHHHHHHHHHSSCCSCHHHHHH---------------------HHHHHT-
T ss_pred h------------------------H----HHHHHHHHHhcCCCcChHHHHH---------------------HHHHHH-
Confidence 1 1 122222222211000 011000 011100
Q ss_pred hccccc-hhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhhh
Q psy14676 576 DSIKLD-DDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKL 654 (1827)
Q Consensus 576 ~~~~~d-~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~ 654 (1827)
.....| +.....+.+.+..+++..+.-|.+.|++++-.+-. .+ ...+..++..|..++.+.+..+|.
T Consensus 238 ~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~-----------~~~~~~a~~~L~~fLss~d~niry 305 (355)
T 3tjz_B 238 RQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CS-----------AKELAPAVSVLQLFCSSPKAALRY 305 (355)
T ss_dssp CC-----------------CCCCCSSHHHHHHHHHHHTC-----------------------CCCTHHHHHHSSSSSSHH
T ss_pred HhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CC-----------HHHHHHHHHHHHHHHcCCCchHHH
Confidence 111122 23446778888888998999999999998876532 11 123445578889999999999999
Q ss_pred hhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHh
Q psy14676 655 STLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLT 703 (1827)
Q Consensus 655 ~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~ 703 (1827)
.+|..++.+...++ .+++....++..+++|+++.|+.+|++.+-
T Consensus 306 vaLr~L~~l~~~~P-----~~v~~~n~~ie~li~d~n~sI~t~Aittll 349 (355)
T 3tjz_B 306 AAVRTLNKVAMKHP-----SAVTACNLDLENLVTDANRSIATLAITTLL 349 (355)
T ss_dssp HHHHCC-------------------------------------------
T ss_pred HHHHHHHHHHHHCc-----HHHHHHHHHHHHHccCCcHhHHHHHHHHhh
Confidence 99999999977666 455567778899999999999999977553
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00027 Score=85.59 Aligned_cols=233 Identities=11% Similarity=0.046 Sum_probs=155.2
Q ss_pred HHHHHHHHHhcC----------CCHHHHHHHHHHHHHHHhhccCCCCch--hHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy14676 38 ITGKLSTAIEKQ----------EDVSVQLEALDILSDLLSRFGALLPSF--HFVILTALLPQLSSPRQAVRKRTIVALSH 105 (1827)
Q Consensus 38 L~P~Ll~~l~~~----------~~~~v~~~al~iL~~l~~~~~~~l~~~--~~~il~~ll~~L~~~~~~VRk~Ai~aL~~ 105 (1827)
.+|.|+..+..+ .++.++..|..+|..++..-.+.-... ....++.|+..|.++++.||..|+.||.+
T Consensus 74 ~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~n 153 (354)
T 3nmw_A 74 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 153 (354)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 456666666311 246789999999999874322110001 23468899999999999999999999999
Q ss_pred HHHhhch---hHHH--HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHh--HHHHHHHHHhhcccCch----H
Q psy14676 106 LVMSCNL---QLYT--KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEH--IERVMPLILKYSREEDD----E 174 (1827)
Q Consensus 106 l~~~~~~---~~~~--~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~--l~~i~p~l~~~~~~~~d----e 174 (1827)
++..-++ ..+. ..++.|++.|.+..+..+++.++.++..++....+.-... ....+|.+.+.+...++ +
T Consensus 154 Ls~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~ 233 (354)
T 3nmw_A 154 LSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLA 233 (354)
T ss_dssp HHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCH
T ss_pred HhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHH
Confidence 9874221 1221 2467777776444567889999999999987332211111 24688888888875544 5
Q ss_pred HHHHHHHHHHHHHHh---CCCccccch--HHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCC
Q psy14676 175 LREFCLQACEAFVQR---CPKEITPHI--QSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNE 249 (1827)
Q Consensus 175 lRe~al~ale~~~~~---~p~e~~p~l--~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e 249 (1827)
+++.|..++..+... .++ .+..+ ...+|.+++.+...
T Consensus 234 v~~~A~~aL~nLs~~~a~~~~-~~~~i~~~g~i~~Lv~lL~~~------------------------------------- 275 (354)
T 3nmw_A 234 IIESGGGILRNVSSLIATNED-HRQILRENNCLQTLLQHLKSH------------------------------------- 275 (354)
T ss_dssp HHHHHHHHHHHHHHHHTTCHH-HHHHHHTTTHHHHHHHHTTCS-------------------------------------
T ss_pred HHHHHHHHHHHHHhhccCCHH-HHHHHHHcCCHHHHHHHHcCC-------------------------------------
Confidence 888888888777752 332 11111 13577777766320
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHcCCchhhhH-HhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhh
Q psy14676 250 YSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMY-RLVSPPLIARFKEREENVKSDIFHAYMALLKG 315 (1827)
Q Consensus 250 ~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~-~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~ 315 (1827)
+.++++.|+.+|..++...++....+. .-++|.|+..++..++.+|..|..++..++..
T Consensus 276 -------~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 276 -------SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp -------CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred -------ChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 125889999999998743333222222 24689999999999999999999999999854
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.017 Score=78.55 Aligned_cols=373 Identities=13% Similarity=0.115 Sum_probs=200.2
Q ss_pred hhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCC---cChHhHHHHHHHhhhhcC----CCChhHHHHHHHHHHHHH
Q psy14676 1214 LTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSA---ISTEMLNKVTVELAPLVS----ESDLHIAQLTLTLLTSIA 1286 (1827)
Q Consensus 1214 ~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~---l~~~~~~~ll~~L~~ll~----d~D~~l~~~al~~L~~l~ 1286 (1827)
++.+.+.+-.+..++++.-..++++.+..++.....- .-...-+.+.|-|...+. .+....+..++..+..-
T Consensus 506 l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~- 584 (997)
T 1vsy_5 506 MSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAV- 584 (997)
T ss_dssp GGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcC-
Confidence 4555666666777788888889999999987743221 112233445555555554 23333333332222210
Q ss_pred HhCCC----------------------ccch----hhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHH
Q psy14676 1287 KIQPN----------------------ALVE----PAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTL 1340 (1827)
Q Consensus 1287 ~~~~~----------------------~~~~----~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aL 1340 (1827)
..|. .... .-+-.++.++|-+... ...++..++ +.++.+.||++.+..|
T Consensus 585 -~DprR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~--~~~~l~~~~--l~h~y~~VRe~Ig~~L 659 (997)
T 1vsy_5 585 -VDLRRSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD--VGKLFDELV--FDHPYDQVRQAVAKLL 659 (997)
T ss_dssp -SCGGGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC--CHHHHHHCC--SCCSCHHHHHHHHHHH
T ss_pred -CChhhhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc--HHHHHHHHH--hCCChHHHHHHHHHHH
Confidence 0110 0000 0022234455555432 345666666 7889999999998887
Q ss_pred hhhhhhh--------------------------------hhhhHHHHHHhhhc--------Cc----hhhHH-HHHHHHH
Q psy14676 1341 GSIAVGN--------------------------------LQQYVPFVLKEIEN--------QP----KRQYL-LLHSLKE 1375 (1827)
Q Consensus 1341 G~i~~~~--------------------------------l~~~LP~Il~~i~~--------~~----~~q~~-~l~aL~E 1375 (1827)
..+.... +...++.+++.++. .+ +.+|. ....+-.
T Consensus 660 ~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~ 739 (997)
T 1vsy_5 660 TTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFY 739 (997)
T ss_dssp HHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHH
T ss_pred HHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHH
Confidence 6532211 11123333333331 01 12221 1122222
Q ss_pred HHhhccccccchhhhhchHHH-HHHHHhhhhcCCch-hHHHH-HHHHHHHhhccC-CCcchHHHHHhh----h-cCCHHH
Q psy14676 1376 IISWQSTSTSGVAQLQQFVPA-IWAQLFLHCECQEE-GTRNV-VAECLGKLTLID-PSNLLPRLQESL----K-SNSALM 1446 (1827)
Q Consensus 1376 ii~~~~~s~~g~~~L~~~~~~-i~~~L~~~~~~~~e-~vR~~-aAecLGkL~~~~-p~~~lP~L~~~l----~-~~~~~~ 1446 (1827)
.+.....+ -....+-||++. ++|.++...+..++ +.... +..|+..|+.+- +...++.+.+.+ + +++. .
T Consensus 740 wl~~~l~~-~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~ 817 (997)
T 1vsy_5 740 WIKEMARG-PNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-Q 817 (997)
T ss_dssp HHHHHSSG-GGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-S
T ss_pred HHHHHhcC-CCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-H
Confidence 22111011 001235566666 66767664433322 33344 456777776433 445556555444 3 4566 8
Q ss_pred HHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCc-hHHHHHHHHHhhhhhhh
Q psy14676 1447 RTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKN-GEVQNLAVKCLGPLVNK 1525 (1827)
Q Consensus 1447 R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~-~~Vr~~a~~~Lg~L~~~ 1525 (1827)
|..++.-++.++-..-- .+++.-...++..++.+|.|+. .+||..|+.+|+-+++.
T Consensus 818 R~~~L~~lq~~~f~n~f-----------------------~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c 874 (997)
T 1vsy_5 818 TKLQLAFIQHFLSAELL-----------------------QLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHN 874 (997)
T ss_dssp HHHHHHHHHHHHHHHTT-----------------------TSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHH-----------------------HcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHc
Confidence 88888777666542211 1122222467889999999999 99999999999999876
Q ss_pred h-hhhhHHHHHHHHHhhhcc--ccccc--ccCCccchhHHHHHHHhhhhccCCCCcccchhhhhhhhcccCCcccccccc
Q psy14676 1526 V-KEFQVETIVDALCSNMVS--DKEQL--RDISSIGLKTVISVVYCLGDRNSSSNMKIDTLAFTHTLLTTHPPAVFHPHI 1600 (1827)
Q Consensus 1526 l-~~~~~~~~v~~l~~~l~~--~~~~~--~~~~~~~vRr~Al~~l~s~a~~~p~li~~~~~~~~~~~l~~llp~l~~~~~ 1600 (1827)
. .......++..+...... ..... +...+...|++|..+|.+..+..|.-+ . ++..+|.++.
T Consensus 875 ~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~v--------P--~P~w~P~~l~--- 941 (997)
T 1vsy_5 875 WKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVF--------P--LPPWIPKNLS--- 941 (997)
T ss_dssp CCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCS--------S--CCTHHHHHHH---
T ss_pred CCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCC--------C--CCcccHHHHH---
Confidence 6 435555677665544422 00000 000112578999999999999988875 1 1355555541
Q ss_pred cccCCcchhccccceeeeccCcccccccCchhhhhHHHHHHHHHhhhhcc
Q psy14676 1601 HILLPPVIIIKTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTCLDR 1650 (1827)
Q Consensus 1601 ~~~~~~t~~~~~lir~v~mgpfkh~vddgl~~Rk~a~e~~~~ll~~~~~~ 1650 (1827)
+.. +|.-|-| ++++++=+|+...-.|.-|.
T Consensus 942 ------~La-------------~~~~~~~-~i~~tvk~tlseFkrTH~D~ 971 (997)
T 1vsy_5 942 ------NLS-------------SWARTSG-MTGNAAKNTISEFKKVRADT 971 (997)
T ss_dssp ------HHH-------------TTSSSCS-SHHHHTHHHHHHHHHHTSTT
T ss_pred ------HHH-------------HHhCCCC-chHHHHHHHHHHHHhccchh
Confidence 111 2444555 48888888888887776553
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00089 Score=81.11 Aligned_cols=228 Identities=12% Similarity=0.120 Sum_probs=152.9
Q ss_pred CHHHHHHHHHHHHHHHHhhch--hHH---HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhH--HHHHHHH
Q psy14676 92 RQAVRKRTIVALSHLVMSCNL--QLY---TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHI--ERVMPLI 164 (1827)
Q Consensus 92 ~~~VRk~Ai~aL~~l~~~~~~--~~~---~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l--~~i~p~l 164 (1827)
++.+|+.|+.+|.+++..-++ ..+ ...++.|+..|.+ ++..+++.++.+|..++..........+ ...+|.+
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCC-CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 478999999999999864331 122 2357888888865 5688999999999999864222222222 2567888
Q ss_pred Hhh-cccCchHHHHHHHHHHHHHHHhCCCccccc--hHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCC
Q psy14676 165 LKY-SREEDDELREFCLQACEAFVQRCPKEITPH--IQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGE 241 (1827)
Q Consensus 165 ~~~-~~~~~delRe~al~ale~~~~~~p~e~~p~--l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~d 241 (1827)
++. .+..++++++.|..++-.+...+++.-... ....+|.+.+.+.+..
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~---------------------------- 227 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRS---------------------------- 227 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCC----------------------------
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCC----------------------------
Confidence 876 455678899988888888876553311111 1357888888775410
Q ss_pred CCCCCCCCCCCCccchhhHHHHHHHHHHHHHHH---cCCchhhhH-HhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhc
Q psy14676 242 DEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIAT---RRDLIGDMY-RLVSPPLIARFKEREENVKSDIFHAYMALLKGTR 317 (1827)
Q Consensus 242 de~e~~~e~sdddD~sWkVRraAak~L~~l~~~---~~~~l~~~~-~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~ 317 (1827)
+...+.+++.|+.+|..++.. .++.-..+. ...+|.|+..+++....++..|..++..+....
T Consensus 228 ------------~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~- 294 (354)
T 3nmw_A 228 ------------QTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN- 294 (354)
T ss_dssp ------------SSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-
T ss_pred ------------CcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCC-
Confidence 001136888899999988862 222212222 246899999999999999999999999886211
Q ss_pred ccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcc
Q psy14676 318 TFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPG 379 (1827)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~ 379 (1827)
......+.. .-.+|.+.+.|+.+++++|..+...|..|...-|.
T Consensus 295 ----------------~~~~~~i~~--~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 295 ----------------PKDQEALWD--MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp ----------------HHHHHHHHH--TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred ----------------HHHHHHHHH--CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 011222221 13467788888899999999888888888876554
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0036 Score=68.56 Aligned_cols=179 Identities=17% Similarity=0.191 Sum_probs=130.5
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhh-hhhhhhHHHHHHhhhhhhh--HHHHHHHHHHHhcCCCccccch
Q psy14676 1136 QCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLK-SELPVCLPILLDRLRNEIT--RLTTVKALTKIAASPLRIDLRP 1212 (1827)
Q Consensus 1136 ~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~-~~l~~lL~~Ll~~L~~e~t--R~~av~al~~ia~~~~~~dl~p 1212 (1827)
..++.-+. |.|..++.+|+.+++.+++...+.+. ..+..++|.+++.++.++- -..|+|+++.+... +++++
T Consensus 36 ~~L~~LL~--dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~---vpL~~ 110 (265)
T 3b2a_A 36 FLILELAG--EDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKD---VPMGS 110 (265)
T ss_dssp HHHHHHTT--SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTT---CCBCH
T ss_pred HHHHHHHh--ccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC---CCCCH
Confidence 33444444 88999999999999999999866665 4788899999988875554 57788888888763 22331
Q ss_pred -hhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCC
Q psy14676 1213 -ILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPN 1291 (1827)
Q Consensus 1213 -~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~ 1291 (1827)
-...++..+.+.+.+.+.-++.-+++.++.+ + .... ...++..+..++...|+++..+++.+|..++....+
T Consensus 111 ~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl--k-v~~~----~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D 183 (265)
T 3b2a_A 111 KTFLKAAKTLVSLLESPDDMMRIETIDVLSKL--Q-PLED----SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD 183 (265)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC--C-BSCC----CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC--C-cccc----hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC
Confidence 2345667777777777788888999999887 2 1112 345777778888888999999999888877654322
Q ss_pred ccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhh
Q psy14676 1292 ALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAV 1345 (1827)
Q Consensus 1292 ~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~ 1345 (1827)
..-...++.-+-..++++++.++.-|-.+|-++..
T Consensus 184 -------------------~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 184 -------------------SGHLTLILDEIPSLLQNDNEFIVELALDVLEKALS 218 (265)
T ss_dssp -------------------CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred -------------------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 12234566667777888899999999888887654
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00078 Score=73.70 Aligned_cols=182 Identities=14% Similarity=0.202 Sum_probs=138.4
Q ss_pred hhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q psy14676 1086 LLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICN 1165 (1827)
Q Consensus 1086 Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~ 1165 (1827)
.+..+...+.|+++.++..|+.+++++.+.... .--...++.+++.++.-+. +.|..|.-.|+.|++.++..
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~------~l~~~~~e~~Ld~iI~llk--~~dEkval~A~r~L~~LLe~ 105 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADS------DLRMMVLERHLDVFINALS--QENEKVTIKALRALGYLVKD 105 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCH------HHHHHHHHHHHHHHHHTCC--STTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccc------cccHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHcC
Confidence 556677778999999999999999999986310 0012467888888888776 77889999999999999975
Q ss_pred hhhhhh-hhhhhhHHHHHHhhh--hhhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHH
Q psy14676 1166 LGDYLK-SELPVCLPILLDRLR--NEITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDT 1242 (1827)
Q Consensus 1166 ~g~~l~-~~l~~lL~~Ll~~L~--~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~ 1242 (1827)
. -+. ..+..+..+|.+.++ |+.-+..|+..+|.+ .. .. ....++..+.+++...++.++.+++.+|-.
T Consensus 106 v--pL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl--kv--~~---~~~~V~~~l~sLl~Skd~~vK~agl~~L~e 176 (265)
T 3b2a_A 106 V--PMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL--QP--LE---DSKLVRTYINELVVSPDLYTKVAGFCLFLN 176 (265)
T ss_dssp C--CBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC--CB--SC---CCHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred C--CCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC--Cc--cc---chHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 4 223 356667777777775 344599999999988 21 11 235667777888876789999999999998
Q ss_pred HHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH
Q psy14676 1243 LLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAK 1287 (1827)
Q Consensus 1243 L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~ 1287 (1827)
+....+. ++.++.++.++..+++..|..++..++..+-.+..
T Consensus 177 ia~~S~D---~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 177 MLNSSAD---SGHLTLILDEIPSLLQNDNEFIVELALDVLEKALS 218 (265)
T ss_dssp HGGGCSS---CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred hhcccCC---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 8775442 33456788889999999999999999988877654
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0031 Score=75.60 Aligned_cols=271 Identities=11% Similarity=0.105 Sum_probs=126.8
Q ss_pred CCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCC
Q psy14676 1248 PSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTP 1327 (1827)
Q Consensus 1248 ~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~ 1327 (1827)
|..+++.....++..+..++...|..++......+..++.. ++. .+ -+...+.+-+++
T Consensus 58 G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e--------------------~i-Lv~Nsl~kDl~~ 115 (355)
T 3tjz_B 58 GEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AED--------------------VI-IVTSSLTKDMTG 115 (355)
T ss_dssp TCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSC--------------------GG-GGHHHHHHHHHS
T ss_pred CCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHH--------------------HH-HHHHHHHhhcCC
Confidence 55566655667888888999999999999988777665553 211 01 245667777888
Q ss_pred CCHhHHHHHHHHHhhhhhhhhh-hhHHHHHHhhhcC-chhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhh
Q psy14676 1328 TSEEVKSAASYTLGSIAVGNLQ-QYVPFVLKEIENQ-PKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHC 1405 (1827)
Q Consensus 1328 ~s~eVr~aAa~aLG~i~~~~l~-~~LP~Il~~i~~~-~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~ 1405 (1827)
+++-+|..|.-+||.+..+.+- .+.+.+.+.+.+. +-.+...+.+..-++.. . ++..+.|++.+...+
T Consensus 116 ~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~---~---pe~v~~~~~~l~~ll---- 185 (355)
T 3tjz_B 116 KEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKC---S---FDVVKRWVNEAQEAA---- 185 (355)
T ss_dssp SCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT---C---HHHHHTTHHHHHHHT----
T ss_pred CcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc---C---HHHHHHHHHHHHHHh----
Confidence 9999999999999998776543 3555666666552 22333333343333331 1 334444554443333
Q ss_pred cCCchhHHHHHHHHHHHhhccCC--CcchHHHHHhhhcC---CHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhh
Q psy14676 1406 ECQEEGTRNVVAECLGKLTLIDP--SNLLPRLQESLKSN---SALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSE 1480 (1827)
Q Consensus 1406 ~~~~e~vR~~aAecLGkL~~~~p--~~~lP~L~~~l~~~---~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~ 1480 (1827)
.+.+.. +.+-+++-|..+.. ..-+.+|...+... ++..-. .-+|++..-.++ |
T Consensus 186 ~d~n~~---V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~---~llr~l~~~~~~--d-------------- 243 (355)
T 3tjz_B 186 SSDNIM---VQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYC---MMIRVASRQLED--E-------------- 243 (355)
T ss_dssp TCSSHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHH---HHHHHHTCC--------------------
T ss_pred cCCCcc---HHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHH---HHHHHHHHhccc--c--------------
Confidence 222222 23344444443321 11223333333221 232222 222322211110 0
Q ss_pred hhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHH
Q psy14676 1481 LQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTV 1560 (1827)
Q Consensus 1481 l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~ 1560 (1827)
.+.....+++.+...++...+.|...|++++-.+.. .+.......+..+-.-+.+ ++.++|++
T Consensus 244 --------~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~~~~~a~~~L~~fLss--------~d~niryv 306 (355)
T 3tjz_B 244 --------DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAKELAPAVSVLQLFCSS--------PKAALRYA 306 (355)
T ss_dssp ---------------------CCCCCSSHHHHHHHHHHHTC------------CCCTHHHHHHS--------SSSSSHHH
T ss_pred --------chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHcC--------CCchHHHH
Confidence 011224566788888999999999999999988754 2222222333333333332 33499999
Q ss_pred HHHHHhhhhccCCCCcccchhhhhhhhcccCCccccc
Q psy14676 1561 ISVVYCLGDRNSSSNMKIDTLAFTHTLLTTHPPAVFH 1597 (1827)
Q Consensus 1561 Al~~l~s~a~~~p~li~~~~~~~~~~~l~~llp~l~~ 1597 (1827)
|+..|+..+..+|..+ ..+-..+...|-+
T Consensus 307 aLr~L~~l~~~~P~~v--------~~~n~~ie~li~d 335 (355)
T 3tjz_B 307 AVRTLNKVAMKHPSAV--------TACNLDLENLVTD 335 (355)
T ss_dssp HHHCC--------------------------------
T ss_pred HHHHHHHHHHHCcHHH--------HHHHHHHHHHccC
Confidence 9999999999999999 6677777776664
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.38 E-value=3.4e-05 Score=79.55 Aligned_cols=119 Identities=9% Similarity=0.017 Sum_probs=79.3
Q ss_pred hhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhc-CchhhHHHHHHHHHHHhhccccccchhhhhc
Q psy14676 1314 VADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIEN-QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQ 1392 (1827)
Q Consensus 1314 ~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~-~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~ 1392 (1827)
.+.-.+.+...+.++++++|..|+.+||.++... +|.+++.+++ ++..|+...++|+.+- .
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~----~~~L~~~L~d~~~~vR~~A~~aL~~~~---------~----- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGDEA----FEPLLESLSNEDWRIRGAAAWIIGNFQ---------D----- 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSSTT----HHHHHHGGGCSCHHHHHHHHHHHGGGC---------S-----
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCchH----HHHHHHHHcCCCHHHHHHHHHHHHhcC---------C-----
Confidence 3556778888999999999999999999887543 4777777766 3445666666665431 1
Q ss_pred hHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHHHHH
Q psy14676 1393 FVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVK 1455 (1827)
Q Consensus 1393 ~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk 1455 (1827)
+...+.|.+.+.+++..+|..++.+||++. ....+|.|.+.++++++.+|..+..||.
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~---~~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIG---GERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC---SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---cHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 122344444445667789999999999986 3456799999999999999999888875
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.34 E-value=8.4e-05 Score=76.55 Aligned_cols=117 Identities=19% Similarity=0.122 Sum_probs=82.5
Q ss_pred HHHHhhhhcCCchhHHHHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhh
Q psy14676 1398 WAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDL 1477 (1827)
Q Consensus 1398 ~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l 1477 (1827)
++.+...+.+++..+|..++.+||++.. + . +|.|.+.++++++.+|..++.++..+-.
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~-~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~------------------ 71 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMGD--E-A-FEPLLESLSNEDWRIRGAAAWIIGNFQD------------------ 71 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCSS--T-T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS------------------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCc--h-H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC------------------
Confidence 4555666667777899999999998753 2 2 5999999999999999998888766531
Q ss_pred hhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccch
Q psy14676 1478 MSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGL 1557 (1827)
Q Consensus 1478 ~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~v 1557 (1827)
...++.+..+++|+++.||..|+.+||.+.. ...+..|...+. + +|..|
T Consensus 72 ----------------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-------~~a~~~L~~~l~-d-------~~~~v 120 (131)
T 1te4_A 72 ----------------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAE-T-------GTGFA 120 (131)
T ss_dssp ----------------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTT-S-------CCTHH
T ss_pred ----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHh-C-------CCHHH
Confidence 1245888889999999999999999999863 223334444333 2 23389
Q ss_pred hHHHHHHHhh
Q psy14676 1558 KTVISVVYCL 1567 (1827)
Q Consensus 1558 Rr~Al~~l~s 1567 (1827)
|+.|..+|..
T Consensus 121 r~~A~~aL~~ 130 (131)
T 1te4_A 121 RKVAVNYLET 130 (131)
T ss_dssp HHHHHHHGGG
T ss_pred HHHHHHHHHh
Confidence 9999988753
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0038 Score=69.25 Aligned_cols=181 Identities=14% Similarity=0.080 Sum_probs=121.0
Q ss_pred hhhhhhhhhHHHHHHhhhcCchhhHHHHHHHHHHHhhccccccchhhhhc-hHHHHHHHHhhhhcCCchhHHHHHHHHHH
Q psy14676 1343 IAVGNLQQYVPFVLKEIENQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQ-FVPAIWAQLFLHCECQEEGTRNVVAECLG 1421 (1827)
Q Consensus 1343 i~~~~l~~~LP~Il~~i~~~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~-~~~~i~~~L~~~~~~~~e~vR~~aAecLG 1421 (1827)
+|.+.+..|+-.+++.+.. +=+++|++.... ..-++. -.+.+.+.....+.++...+|-.|++.||
T Consensus 30 ~~~~~~~~~~~~~~~~~~~-------~~~gf~~~~~~a------~~~~~~~~~~~~~~la~~L~~~~~deVR~~Av~lLg 96 (240)
T 3l9t_A 30 MGRGSMKQYVARLEKDFSL-------IEHGFKEEEQRA------LTDYKSNDGEYIKKLAFLAYQSDVYQVRMYAVFLFG 96 (240)
T ss_dssp ----CHHHHHHHHHHHHTC------------CHHHHHH------HHHHHHSCHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHH-------hhcccHHHHHHH------HHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 6778888888777776543 113444443310 111111 13444455555555777889999999999
Q ss_pred HhhccCCCcchHHHHH-hhhcCCHHHHHHHHHHHHHHhh-hcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHH
Q psy14676 1422 KLTLIDPSNLLPRLQE-SLKSNSALMRTTVLTAVKFTIS-DQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKM 1499 (1827)
Q Consensus 1422 kL~~~~p~~~lP~L~~-~l~~~~~~~R~t~l~Alk~~~~-~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ 1499 (1827)
++ . .-...+|.+.. +..+++..+|..+..++...+. ..++ ..++.
T Consensus 97 ~~-~-~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-------------------------------~~l~~ 143 (240)
T 3l9t_A 97 YL-S-KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-------------------------------KALPI 143 (240)
T ss_dssp HT-T-TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-------------------------------TTHHH
T ss_pred hc-c-CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-------------------------------HHHHH
Confidence 99 3 33578888887 6668899999999999998885 3221 13377
Q ss_pred HHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhhhhccCCCCc
Q psy14676 1500 LLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRNSSSNM 1576 (1827)
Q Consensus 1500 ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~~~p~li 1576 (1827)
+..-.+|+++.||..|+..+-.-++......-...+-+++..+.+|.+. -||+.--.+||-.++..|+.|
T Consensus 144 ~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~-------yVrKSVan~LrD~SK~~Pd~V 213 (240)
T 3l9t_A 144 IDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSE-------YVRKSVGNALRDISKKFPDLV 213 (240)
T ss_dssp HHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCH-------HHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHH-------HHHHHHHHHHHHHhhhCHHHH
Confidence 7888999999999999999865444322233445556666666666554 899999999999999999999
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.15 Score=67.32 Aligned_cols=144 Identities=13% Similarity=0.103 Sum_probs=88.1
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCch--hHHH
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSF--HFVI 80 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~--~~~i 80 (1827)
|.....|..++.||..++. -|. ....-+.+.+++.++..+-.+++..||.+|..+|..++...|+.+..+ ...+
T Consensus 45 S~~~~~r~~A~~al~~l~~-~~~---~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~i 120 (684)
T 4gmo_A 45 SPDAKSRTTAAGAIANIVQ-DAK---CRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDV 120 (684)
T ss_dssp SSCCSHHHHHHHHHHHHTT-SHH---HHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTH
T ss_pred CCCHHHHHHHHHHHHHHHc-CcH---HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcCh
Confidence 4455689999999999884 221 222334455666666543345689999999999999998877654332 1234
Q ss_pred HHHHhhhcCC--------------CC-------HHHHHHHHHHHHHHHHhhchhHHH-----HHHHHHHHhccC--CCCH
Q psy14676 81 LTALLPQLSS--------------PR-------QAVRKRTIVALSHLVMSCNLQLYT-----KLIDFLLEGLTT--NKST 132 (1827)
Q Consensus 81 l~~ll~~L~~--------------~~-------~~VRk~Ai~aL~~l~~~~~~~~~~-----~l~~~ll~~L~~--~~~~ 132 (1827)
++.+...|.. .. ..+-..++.+|..+++...+ .+. ..++.++..|.. ....
T Consensus 121 l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~-~~~~v~~~~~l~~l~~~L~~~~~~~~ 199 (684)
T 4gmo_A 121 LTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDE-IHEAVATKQTILRLLFRLISADIAPQ 199 (684)
T ss_dssp HHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHH-HHHHHHTCHHHHHHHHHHHHHCCSCH
T ss_pred HHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHH-HHHHHHhcccHHHHHHHHHhcCCCcH
Confidence 4444333211 01 12334566777777776443 222 235566666522 2346
Q ss_pred HHHHHHHHHHHHHHHHhch
Q psy14676 133 STNRTYIQCFAAICRQAGH 151 (1827)
Q Consensus 133 ~~r~~ai~~l~~la~~~~~ 151 (1827)
.++..+.+||..+++....
T Consensus 200 ~v~~~a~~~L~~ls~dn~~ 218 (684)
T 4gmo_A 200 DIYEEAISCLTTLSEDNLK 218 (684)
T ss_dssp HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccCHH
Confidence 7999999999999876544
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00017 Score=82.29 Aligned_cols=64 Identities=16% Similarity=0.084 Sum_probs=45.0
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHH
Q psy14676 86 PQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLIL 165 (1827)
Q Consensus 86 ~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~ 165 (1827)
..++|+++.||..|+..+ +. .++..|.+++++.||..+...+ +. +.+.
T Consensus 57 ~ll~d~~~~VR~~AA~~l-------~~--------~~l~~L~~D~~~~VR~~aA~~L-------~~----------~~L~ 104 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS-------PV--------EALTPLIRDSDEVVRRAVAYRL-------PR----------EQLS 104 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS-------CG--------GGGGGGTTCSSHHHHHHHHTTS-------CS----------GGGG
T ss_pred HHhcCCCHHHHHHHHHhC-------CH--------HHHHHHccCcCHHHHHHHHHHC-------CH----------HHHH
Confidence 445899999999988854 22 2355666778899999987643 11 3456
Q ss_pred hhcccCchHHHHHHHH
Q psy14676 166 KYSREEDDELREFCLQ 181 (1827)
Q Consensus 166 ~~~~~~~delRe~al~ 181 (1827)
..+++++.++|..+..
T Consensus 105 ~ll~D~d~~VR~~aA~ 120 (244)
T 1lrv_A 105 ALMFDEDREVRITVAD 120 (244)
T ss_dssp GTTTCSCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHH
Confidence 6678889999966544
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.11 Score=65.96 Aligned_cols=156 Identities=18% Similarity=0.162 Sum_probs=105.9
Q ss_pred hhhhHHHHHHhhhhhhh---HHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcch--hHHHHHHHHHHHHHHHHhCC
Q psy14676 1174 LPVCLPILLDRLRNEIT---RLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKN--QRALKLSTLLLLDTLLVNYP 1248 (1827)
Q Consensus 1174 l~~lL~~Ll~~L~~e~t---R~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~--~r~lR~~al~aL~~L~~~~~ 1248 (1827)
-...++.|.+|+.+.+- |+.|+.++..++.... ...-...++.|...|++. +.++-++++++|..+...-.
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~----~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYR----LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTT----THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhH----HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence 44577888899987543 9999999998875321 122345677777777754 45566678888876655322
Q ss_pred CC----cC----h---HhH-------HHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccC
Q psy14676 1249 SA----IS----T---EML-------NKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTD 1310 (1827)
Q Consensus 1249 ~~----l~----~---~~~-------~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~ 1310 (1827)
.. .+ . .+. ..-++.|..++...|.++|-.++.+|..++...|..+. + .+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q---------~---~I- 161 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQ---------Q---II- 161 (651)
T ss_dssp -------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHH---------H---HH-
T ss_pred cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHH---------H---HH-
Confidence 10 00 0 011 13466677889999999999999999999998764221 0 00
Q ss_pred CCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhh
Q psy14676 1311 LTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGN 1347 (1827)
Q Consensus 1311 ~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~ 1347 (1827)
+ ..|.-++.++..+.|..+-+|..|...|..+..+|
T Consensus 162 l-~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n 197 (651)
T 3grl_A 162 L-VSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSN 197 (651)
T ss_dssp H-HSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTC
T ss_pred H-hCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCC
Confidence 0 11456788899999999999999999888877665
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.12 Score=62.67 Aligned_cols=125 Identities=14% Similarity=0.219 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCC
Q psy14676 51 DVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNK 130 (1827)
Q Consensus 51 ~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~ 130 (1827)
+...+.=|-. ++.+|-..+......-+++++..+.|.+..||+.|+..|..+|.. +....+.+.|.+-|+. +
T Consensus 41 ~~k~K~LaaQ----~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~kiaDvL~QlLqt-d 112 (507)
T 3u0r_A 41 GTKEKRLAAQ----FIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPRVADILTQLLQT-D 112 (507)
T ss_dssp CHHHHHHHHH----HHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHHHHHHHHHHTTC-C
T ss_pred CHHHHHHHHH----HHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhhHHHHHHHHHhc-c
Confidence 4555554444 444444445456678899999999999999999999888888766 5677777777777765 4
Q ss_pred CHHHHHHHHHHHHHHHHHhchh-hHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCC
Q psy14676 131 STSTNRTYIQCFAAICRQAGHR-FAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCP 191 (1827)
Q Consensus 131 ~~~~r~~ai~~l~~la~~~~~~-~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p 191 (1827)
++.....+=++|.++.+..+.. +...+..|. . .++.+||.++..+..=+...|
T Consensus 113 d~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~----~----~~e~~Rer~lkFi~~kl~~l~ 166 (507)
T 3u0r_A 113 DSAEFNLVNNALLSIFKMDAKGTLGGLFSQIL----Q----GEDIVRERAIKFLSTKLKTLP 166 (507)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH----H----SCHHHHHHHHHHHHHHGGGSC
T ss_pred chHHHHHHHHHHHHHHhcChHHHHHHHHHHHc----c----cchHHHHHHHHHHHHHHhhcc
Confidence 5666777777888888776643 222222222 2 468899999887644444444
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0054 Score=74.61 Aligned_cols=174 Identities=16% Similarity=0.148 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhh
Q psy14676 7 QLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLP 86 (1827)
Q Consensus 7 ~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~ 86 (1827)
-+|+.++-+|.++ ..+|+.. . ++-.|+..+. ...|++|.+++-.|-.+ .+.+.. .+.++++++.
T Consensus 243 PVRETaAQtLGaL-~hLp~e~-----~----IL~qLV~~l~-~~~WEVRHGGLLGLKYL----~DLL~~-Ld~Vv~aVL~ 306 (800)
T 3oc3_A 243 PVRDAAAYLLSRI-YPLIGPN-----D----IIEQLVGFLD-SGDWQVQFSGLIALGYL----KEFVED-KDGLCRKLVS 306 (800)
T ss_dssp HHHHHHHHHHHHH-TTTSCSC-----C----HHHHHTTGGG-CSCHHHHHHHHHHHHHT----GGGCCC-HHHHHHHHHH
T ss_pred ehHHHHHHHHHHH-HhCChhH-----H----HHHHHHhhcC-CCCeeehhhhHHHHHHH----HHHHHH-HHHHHHHHHh
Confidence 4999999999999 8998862 2 2233333444 45899999999999988 333333 6789999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHH
Q psy14676 87 QLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTT-NKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLIL 165 (1827)
Q Consensus 87 ~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~-~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~ 165 (1827)
.|+|++-.||..|+.+|.-++ .++.++.++..+...|.+ ++-.......++.|+.++..-...-. .+.++|.+.
T Consensus 307 GL~D~DDDVRAVAAetLiPIA---~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~--dp~LVPRL~ 381 (800)
T 3oc3_A 307 LLSSPDEDIKLLSAELLCHFP---ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSI--PPERLKDIF 381 (800)
T ss_dssp HTTCSSHHHHHHHHHHHTTSC---CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCC--CSGGGGGTG
T ss_pred hcCCcccHHHHHHHHHhhhhc---chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccccc--ChHHHHHHH
Confidence 999999999999999998888 445677777888777754 22234567788999999886542111 137888888
Q ss_pred hhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhcc
Q psy14676 166 KYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITY 211 (1827)
Q Consensus 166 ~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~ 211 (1827)
-++...-.+||.+.+.++..|. ...++.++++.+--
T Consensus 382 PFLRHtITSVR~AVL~TL~tfL----------~~~~LRLIFQNILL 417 (800)
T 3oc3_A 382 PCFTSPVPEVRTSILNMVKNLS----------EESIDFLVAEVVLI 417 (800)
T ss_dssp GGGTCSSHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHH
T ss_pred hhhcCCcHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHh
Confidence 8888889999999988887666 44567777776543
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.069 Score=59.30 Aligned_cols=94 Identities=17% Similarity=0.224 Sum_probs=71.7
Q ss_pred CchhHHHHHHHHHHHhhc-cCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhccc
Q psy14676 1408 QEEGTRNVVAECLGKLTL-IDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSI 1486 (1827)
Q Consensus 1408 ~~e~vR~~aAecLGkL~~-~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~ 1486 (1827)
+.=+||..+|.++|+++. .+|+..+|.+.+..+++++.+|..+...++-.........+
T Consensus 116 ~~WrVre~lA~a~~~~~~~~~pe~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~d-------------------- 175 (240)
T 3l9t_A 116 NNWRVQEVLAKAFDEFCKKIEYKKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKEN-------------------- 175 (240)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTC--------------------
T ss_pred CCccHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcC--------------------
Confidence 334588999999999996 88998889999999999999998888776542211000111
Q ss_pred ccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhh
Q psy14676 1487 KLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVK 1527 (1827)
Q Consensus 1487 ~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~ 1527 (1827)
.+.++|.+-.+..|++..||.+.+-.|..+.|..+
T Consensus 176 ------p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 176 ------PNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp ------HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred ------HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 13577888889999999999999999999887544
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.39 Score=61.08 Aligned_cols=299 Identities=16% Similarity=0.194 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhccCC------------C
Q psy14676 7 QLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQ-EDVSVQLEALDILSDLLSRFGAL------------L 73 (1827)
Q Consensus 7 ~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~-~~~~v~~~al~iL~~l~~~~~~~------------l 73 (1827)
+-|..+-.+||.+..+-|.. |-..=+|.|++.++++ +|.++-..+|++|..++..-+.. +
T Consensus 37 eDRR~Av~~Lk~~sk~y~~~-------Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~ 109 (651)
T 3grl_A 37 DDRRNAVRALKSLSKKYRLE-------VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDL 109 (651)
T ss_dssp HHHHHHHHHHHHTTTTTTTH-------HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CH
T ss_pred hHHHHHHHHHHHHHHHhHHH-------hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHH
Confidence 45778888999997666553 3444568888888554 58888888999997766543210 0
Q ss_pred Cch-------hHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHH------HHHHHHHhccCCCCHHHHHHHHH
Q psy14676 74 PSF-------HFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTK------LIDFLLEGLTTNKSTSTNRTYIQ 140 (1827)
Q Consensus 74 ~~~-------~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~------l~~~ll~~L~~~~~~~~r~~ai~ 140 (1827)
+-. .+.-++.++..|++.+-.+|-.|+++|..++...+...... -++.++..|.+ ....+|..++.
T Consensus 110 ~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d-~rE~iRneall 188 (651)
T 3grl_A 110 GSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD-SREVIRNDGVL 188 (651)
T ss_dssp HHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC-SSHHHHHHHHH
T ss_pred HHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC-chHHHHHHHHH
Confidence 000 12457778889999999999999999999999887654333 34667777764 45789999999
Q ss_pred HHHHHHHHhch--hhHHhHHHHHHHHHhhcccC----chHHHHHHHHHHHHHHHhCCC---ccc--cchHHHHHHHHHHh
Q psy14676 141 CFAAICRQAGH--RFAEHIERVMPLILKYSREE----DDELREFCLQACEAFVQRCPK---EIT--PHIQSITELCLTYI 209 (1827)
Q Consensus 141 ~l~~la~~~~~--~~~p~l~~i~p~l~~~~~~~----~delRe~al~ale~~~~~~p~---e~~--p~l~~ii~~ll~~l 209 (1827)
.|..+++...+ ++. -++..++.++.++..+ ...+.+-|+..+..+++.-+. .|+ .+++.+.+++
T Consensus 189 LL~~Lt~~n~~iQklV-AFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL---- 263 (651)
T 3grl_A 189 LLQALTRSNGAIQKIV-AFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWF---- 263 (651)
T ss_dssp HHHHHHTTCHHHHHHH-HHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGG----
T ss_pred HHHHHhcCCHHHHHHH-HHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHh----
Confidence 99999987653 222 1345667777776543 347888899999999886542 121 2444443322
Q ss_pred ccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHH-----HHHHHHHHHHHcCCc-----h
Q psy14676 210 TYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRA-----AAKCLEAIIATRRDL-----I 279 (1827)
Q Consensus 210 ~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRra-----Aak~L~~l~~~~~~~-----l 279 (1827)
..+ +++..|.-.|. +..++..++....+. -
T Consensus 264 ~~~----------------------------------------~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~n 303 (651)
T 3grl_A 264 EVG----------------------------------------DENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSC 303 (651)
T ss_dssp CCC----------------------------------------SCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHH
T ss_pred CCC----------------------------------------ccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 110 00124653332 333444443321110 0
Q ss_pred hh-hHH-hhhHHHHhhcCCC--CHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHh-------hhHHHH
Q psy14676 280 GD-MYR-LVSPPLIARFKER--EENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLST-------QVPSLV 348 (1827)
Q Consensus 280 ~~-~~~-~v~p~L~~~l~e~--ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~lp~Iv 348 (1827)
+. +++ .+++.|+..+... ...+|..|+.+++.+++.... ....+.. ..|.++
T Consensus 304 Q~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~-----------------~Q~~fa~~~vp~~~~~p~li 366 (651)
T 3grl_A 304 QKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQV-----------------NQDYFASVNAPSNPPRPAIV 366 (651)
T ss_dssp HHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHH-----------------HHHHHHHCEESSSSCEEHHH
T ss_pred HHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHH-----------------HHHHHhhccCCCCCCcChHH
Confidence 00 111 3455566554333 678999999999999864321 0111111 236677
Q ss_pred HHHHHHhccCC-HhHHHHHHHHHHHHHH
Q psy14676 349 KALQCQLREKS-IRTRQDCLALLRELVQ 375 (1827)
Q Consensus 349 ~~l~~~L~d~~-~~vR~a~~~ll~~L~~ 375 (1827)
..+...+++.+ ..+|.+++.++.....
T Consensus 367 ~lL~~~~~~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 367 VLLMSMVNERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp HHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence 76766666654 6789888777665553
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0016 Score=74.20 Aligned_cols=15 Identities=20% Similarity=0.087 Sum_probs=11.7
Q ss_pred hccCCHhHHHHHHHH
Q psy14676 355 LREKSIRTRQDCLAL 369 (1827)
Q Consensus 355 L~d~~~~vR~a~~~l 369 (1827)
|+|+++.||.++...
T Consensus 226 L~D~~~~VR~aa~~~ 240 (244)
T 1lrv_A 226 LDEPDPEVRLAIAGR 240 (244)
T ss_dssp CCCCCHHHHHHHHCC
T ss_pred ccCCCHHHHHHHHHH
Confidence 489999999877643
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.077 Score=70.18 Aligned_cols=89 Identities=18% Similarity=0.303 Sum_probs=66.1
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh-HH--HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHH
Q psy14676 79 VILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ-LY--TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAE 155 (1827)
Q Consensus 79 ~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~-~~--~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p 155 (1827)
.++| +++.|+++++..|..|+.||+.+++.-+.. .+ ...+..++..+..+.+.++|..+..+|..++...+..+..
T Consensus 35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHH-HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHH-HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 3555 446789999999999999999999753322 11 2356677777666778999999999999999988877666
Q ss_pred hH--HHHHHHHHhhc
Q psy14676 156 HI--ERVMPLILKYS 168 (1827)
Q Consensus 156 ~l--~~i~p~l~~~~ 168 (1827)
|+ .+++|.+...+
T Consensus 114 ~l~~~~il~~L~~~l 128 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAA 128 (684)
T ss_dssp HHHHTTHHHHHHHHH
T ss_pred HHHHcChHHHHHHHH
Confidence 54 34666666554
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.26 Score=55.59 Aligned_cols=174 Identities=11% Similarity=0.102 Sum_probs=105.7
Q ss_pred HHHhhhhcCCCCh--hHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHH
Q psy14676 1260 TVELAPLVSESDL--HIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAAS 1337 (1827)
Q Consensus 1260 l~~L~~ll~d~D~--~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa 1337 (1827)
++.|..+++.+|. ++...+...+..++...+..- ..+ .....+|.+++.+.+++++++..|+
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r-------------~~I---~~~G~Ip~LV~lL~s~~~~vq~~Aa 73 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEAR-------------KRV---NQLRGILKLLQLLKVQNEDVQRAVC 73 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHH-------------HHH---HHTTHHHHHHHGGGCCCHHHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHH-------------HHH---HHcCCHHHHHHHHcCCCHHHHHHHH
Confidence 4566678887776 777777778888876543110 000 0123568899999999999999999
Q ss_pred HHHhhhhhhhh--------hhhHHHHHHhhhc--CchhhHHHHHHHHHHHhhccccccchhhhhc-hHHHHHHHHhhhh-
Q psy14676 1338 YTLGSIAVGNL--------QQYVPFVLKEIEN--QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQ-FVPAIWAQLFLHC- 1405 (1827)
Q Consensus 1338 ~aLG~i~~~~l--------~~~LP~Il~~i~~--~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~-~~~~i~~~L~~~~- 1405 (1827)
.+|++++.++- .--+|.+++.+.. ....|.....+|..+-.. +..++ .+..-.+.|.+.+
T Consensus 74 ~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~--------~~~k~~i~~~~i~~Lv~ll~ 145 (233)
T 3tt9_A 74 GALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN--------DKLKNLMITEALLTLTENII 145 (233)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--------GGGHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC--------hhhHHHHHhccHHHHHHHHh
Confidence 99999876431 1256888888863 334455554445444221 12221 1122234444321
Q ss_pred ----c-----------CCchhHHHHHHHHHHHhhccCC---------CcchHHHHHhhhcC------CHHHHHHHHHHHH
Q psy14676 1406 ----E-----------CQEEGTRNVVAECLGKLTLIDP---------SNLLPRLQESLKSN------SALMRTTVLTAVK 1455 (1827)
Q Consensus 1406 ----~-----------~~~e~vR~~aAecLGkL~~~~p---------~~~lP~L~~~l~~~------~~~~R~t~l~Alk 1455 (1827)
+ ..+..++..++.||..|+..++ ..+++.|..+++.. +...+..++-+|+
T Consensus 146 ~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~ 225 (233)
T 3tt9_A 146 IPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILH 225 (233)
T ss_dssp HHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Confidence 1 1255789999999999998663 24667777776532 3344555565665
Q ss_pred HH
Q psy14676 1456 FT 1457 (1827)
Q Consensus 1456 ~~ 1457 (1827)
.+
T Consensus 226 nL 227 (233)
T 3tt9_A 226 NL 227 (233)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 | Back alignment and structure |
|---|
Probab=95.09 E-value=1.8 Score=57.51 Aligned_cols=113 Identities=14% Similarity=0.175 Sum_probs=88.4
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhc---hhHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHhc--h
Q psy14676 79 VILTALLPQLSSPRQAVRKRTIVALSHLVMSCN---LQLYTKLIDFLLEGLTT--NKSTSTNRTYIQCFAAICRQAG--H 151 (1827)
Q Consensus 79 ~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~---~~~~~~l~~~ll~~L~~--~~~~~~r~~ai~~l~~la~~~~--~ 151 (1827)
.+++.++..+.+-+..+...+..|+..++-..+ +-.++.+++.+...|.. -..+....+++.++..+++... +
T Consensus 339 ~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~ 418 (799)
T 1vsy_4 339 IFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDK 418 (799)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTST
T ss_pred HHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCc
Confidence 455666666888999999999999999999777 88888888888888866 4556667788999999998764 4
Q ss_pred hhHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCC
Q psy14676 152 RFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCP 191 (1827)
Q Consensus 152 ~~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p 191 (1827)
.+..|+..++..++..+.-.|..---.+++.+..+....|
T Consensus 419 ~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ip 458 (799)
T 1vsy_4 419 LYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIP 458 (799)
T ss_dssp TGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSC
T ss_pred ccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhcc
Confidence 5778999999999988877677655566666666666554
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.17 Score=56.94 Aligned_cols=151 Identities=13% Similarity=0.089 Sum_probs=100.0
Q ss_pred HHHHhhhhcCCch--hHHHHHHHHHHHhhccCC--------CcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q psy14676 1398 WAQLFLHCECQEE--GTRNVVAECLGKLTLIDP--------SNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDK 1467 (1827)
Q Consensus 1398 ~~~L~~~~~~~~e--~vR~~aAecLGkL~~~~p--------~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~ 1467 (1827)
.+.+++.+.++++ .++..+|.+|..|+.-++ ...+|.|.++|+++++.++..++.||+.+..+.+
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~----- 84 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN----- 84 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH-----
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH-----
Confidence 3555555555554 677788899999997663 2567999999999999999999999999975321
Q ss_pred hHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhc-CCchHHHHHHHHHhhhhhhhh--hhhhHHHHHHHHHhhhc-
Q psy14676 1468 DFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLE-DKNGEVQNLAVKCLGPLVNKV--KEFQVETIVDALCSNMV- 1543 (1827)
Q Consensus 1468 ~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~-D~~~~Vr~~a~~~Lg~L~~~l--~~~~~~~~v~~l~~~l~- 1543 (1827)
.-+ .++ .....+|.++.+|. .++..++.+|+.+|-.|...- ...-...-+.+|...+.
T Consensus 85 ~nk-~~I-----------------~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~ 146 (233)
T 3tt9_A 85 DNK-LEV-----------------AELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIII 146 (233)
T ss_dssp HHH-HHH-----------------HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCH
T ss_pred HHH-HHH-----------------HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhc
Confidence 111 000 11235699999997 478999999999999987432 22223344555655432
Q ss_pred ---cc----ccccccCCccchhHHHHHHHhhhhcc
Q psy14676 1544 ---SD----KEQLRDISSIGLKTVISVVYCLGDRN 1571 (1827)
Q Consensus 1544 ---~~----~~~~~~~~~~~vRr~Al~~l~s~a~~ 1571 (1827)
+. +...+...+.+|++-|..+|...+..
T Consensus 147 p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~ 181 (233)
T 3tt9_A 147 PFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSA 181 (233)
T ss_dssp HHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTS
T ss_pred cccCCcccccccccccchHHHHHHHHHHHHHHhcC
Confidence 10 00011234568999999888777654
|
| >4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} | Back alignment and structure |
|---|
Probab=93.30 E-value=1.7 Score=47.02 Aligned_cols=80 Identities=14% Similarity=0.142 Sum_probs=61.8
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCCCH-HHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhh----hhHHHHHHHH
Q psy14676 1124 SYDFAPFTSDIYQCTLVRLKAADIDQ-EVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNE----ITRLTTVKAL 1198 (1827)
Q Consensus 1124 ~~~~~~~l~~l~~~ll~~L~~~D~d~-eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e----~tR~~av~al 1198 (1827)
.-.+.||+.++++.++..+-+..... .+|+.|...++.+...+|.....-.+.+...+.+.+.++ .+...|+.++
T Consensus 78 ~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL 157 (196)
T 4atg_A 78 HVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCL 157 (196)
T ss_dssp TCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 35678999999999999887655433 899999999999999998755444566666666666544 3589999988
Q ss_pred HHHhc
Q psy14676 1199 TKIAA 1203 (1827)
Q Consensus 1199 ~~ia~ 1203 (1827)
..++.
T Consensus 158 ~~lG~ 162 (196)
T 4atg_A 158 SILSK 162 (196)
T ss_dssp HHHCH
T ss_pred HHhHH
Confidence 88774
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=92.82 E-value=16 Score=41.50 Aligned_cols=208 Identities=11% Similarity=0.195 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCch
Q psy14676 94 AVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDD 173 (1827)
Q Consensus 94 ~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~d 173 (1827)
..|-....-+..++-.-.+.+++++++.+++. ..+.+..+|+..+..+...+..-+. +...+++.+..+++++++
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~-~~~~~~~vrk~~~~Fi~e~~~~k~~----l~~~~l~~L~~Ll~d~d~ 104 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEEFLESVLSL-AHDSNMEVRKQVVAFVEQVCKVKVE----LLPHVINVVSMLLRDNSA 104 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGG-GGCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCH
Confidence 45555555555555555567889999999984 4456789999999999999866543 466677777777888888
Q ss_pred HHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCC
Q psy14676 174 ELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDD 253 (1827)
Q Consensus 174 elRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdd 253 (1827)
.+...+.+++.. +.|.+++++...|+.. +.
T Consensus 105 ~V~K~~I~~~~~---------------iY~~~l~~i~~~~~~~-----------------------------------~~ 134 (257)
T 3gs3_A 105 QVIKRVIQACGS---------------IYKNGLQYLCSLMEPG-----------------------------------DS 134 (257)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHHHHTTSSSCC-----------------------------------HH
T ss_pred HHHHHHHHHHHH---------------HHHHHHHHHhcCCCCc-----------------------------------ch
Confidence 888788776543 6677888876544320 01
Q ss_pred ccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHh-hhcccCCCCCC--CCC-C
Q psy14676 254 DDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLK-GTRTFSPLTPS--DPN-Q 329 (1827)
Q Consensus 254 dD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~-~~~~~~~~~~~--~~~-~ 329 (1827)
++..|.. +..+=..++..+......||..++..+..++- ++......+.. +.+ .
T Consensus 135 ~~~~W~~----------------------m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~ 192 (257)
T 3gs3_A 135 AEQAWNI----------------------LSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLA 192 (257)
T ss_dssp HHHHHHH----------------------HHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGG
T ss_pred HHHHHHH----------------------HHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHH
Confidence 1235652 11111233345566789999999998888663 33211111100 000 0
Q ss_pred CCCCCCh---HhhHHhhhHHHHHHHHHHhccC--CHhHHHHHHHHHHHHHHhCc
Q psy14676 330 MDQEDSP---LCLLSTQVPSLVKALQCQLREK--SIRTRQDCLALLRELVQTLP 378 (1827)
Q Consensus 330 ~~~~~~~---~~~l~~~lp~Iv~~l~~~L~d~--~~~vR~a~~~ll~~L~~vl~ 378 (1827)
+-+..++ ...|+..-..++..++..+..+ +...-.+++..|..++..=|
T Consensus 193 ~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP 246 (257)
T 3gs3_A 193 DVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRP 246 (257)
T ss_dssp GSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred HCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCc
Confidence 0111222 2557777777778788776654 23334467766666666554
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=89.53 E-value=46 Score=40.74 Aligned_cols=90 Identities=10% Similarity=-0.104 Sum_probs=63.7
Q ss_pred ChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCC
Q psy14676 1047 SALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYD 1126 (1827)
Q Consensus 1047 ~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~ 1126 (1827)
+.+.|.-|..++..+..+.++. -..-+..++..+.|++..||..|++.+..+++ .
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~l--------------~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck----------~- 95 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPEL--------------ADSAINAQLDLCEDEDVSIRRQAIKELPQFAT----------G- 95 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGGG--------------HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCC----------T-
T ss_pred CHHHHHHHHHHHHHHHhhChhh--------------HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhh----------h-
Confidence 5888999999999887776654 44567788899999999999998877766663 1
Q ss_pred cchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q psy14676 1127 FAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICN 1165 (1827)
Q Consensus 1127 ~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~ 1165 (1827)
.++..+.+.+...|. .++.......-.+|-+++..
T Consensus 96 --~~i~kiaDvL~QlLq--tdd~~E~~~V~~sL~sllk~ 130 (507)
T 3u0r_A 96 --ENLPRVADILTQLLQ--TDDSAEFNLVNNALLSIFKM 130 (507)
T ss_dssp --TCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHHHH
T ss_pred --hhhhhHHHHHHHHHh--ccchHHHHHHHHHHHHHHhc
Confidence 356677666655555 44555556666666666654
|
| >4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} | Back alignment and structure |
|---|
Probab=87.77 E-value=3.9 Score=44.28 Aligned_cols=121 Identities=11% Similarity=0.196 Sum_probs=80.7
Q ss_pred hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHhc
Q psy14676 76 FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLT-----TNKSTSTNRTYIQCFAAICRQAG 150 (1827)
Q Consensus 76 ~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~-----~~~~~~~r~~ai~~l~~la~~~~ 150 (1827)
|...+.++++. ..|+.|...|.. +..+.++++.++..+. .-.+...-...++.+.++...-.
T Consensus 12 yf~~It~a~~~-------~~r~~aL~sL~~------D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~ 78 (196)
T 4atg_A 12 YFDKILSMIKS-------DMKDIAIECLEK------ESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKH 78 (196)
T ss_dssp HHHHHHHHHTS-------TTHHHHHHHHHH------CSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHh-------HHHHHHHHHHhc------CCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCC
Confidence 44555555554 347766665554 3334455555555442 12345666777777788777666
Q ss_pred hhhHHhHHHHHHHHHhhccc---CchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHh
Q psy14676 151 HRFAEHIERVMPLILKYSRE---EDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYI 209 (1827)
Q Consensus 151 ~~~~p~l~~i~p~l~~~~~~---~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l 209 (1827)
-.+.||+..++|.++.++-. ....+|+.|-.-+..++++++.....--+.++..+.+.+
T Consensus 79 l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l 140 (196)
T 4atg_A 79 VFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVW 140 (196)
T ss_dssp CCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHH
Confidence 78899999999999987521 233899999999999999987654444466777777655
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=86.34 E-value=44 Score=46.07 Aligned_cols=208 Identities=13% Similarity=0.149 Sum_probs=116.2
Q ss_pred hhhHHHHHHhhhhhh-hHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhc----chhHHHHHHHHHHHHHHHHhCCC
Q psy14676 1175 PVCLPILLDRLRNEI-TRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLR----KNQRALKLSTLLLLDTLLVNYPS 1249 (1827)
Q Consensus 1175 ~~lL~~Ll~~L~~e~-tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lr----k~~r~lR~~al~aL~~L~~~~~~ 1249 (1827)
+..+..+.+.++++. +-..|+.++....... . | -.+.+..+..++. +.++.+|.+++-+++.|+.++..
T Consensus 355 ~~a~~~i~~~i~~~~l~~~ea~~~l~~~~~~~-~----P-t~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~ 428 (1056)
T 1lsh_A 355 SEALLFLKRTLASEQLTSAEATQIVASTLSNQ-Q----A-TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCA 428 (1056)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTC-C----C-CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHhhccC-C----C-CHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666543 3455667666543321 1 1 1234444444444 34577999999999998875321
Q ss_pred CcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCC
Q psy14676 1250 AISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTS 1329 (1827)
Q Consensus 1250 ~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s 1329 (1827)
.- ..++. ..++.+...+.+.+...+
T Consensus 429 ~~-----------------------------------~~c~~--------------------~~v~~i~~~l~~~~~~~~ 453 (1056)
T 1lsh_A 429 NT-----------------------------------VSCPD--------------------ELLQPLHDLLSQSSDRAK 453 (1056)
T ss_dssp TC-----------------------------------SSCCG--------------------GGTHHHHHHHHHHHHTTC
T ss_pred cC-----------------------------------CCCCH--------------------HHHHHHHHHHHHHHhcCC
Confidence 10 00110 012345555666666667
Q ss_pred HhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhc------C--chhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHH
Q psy14676 1330 EEVKSAASYTLGSIAVGNLQQYVPFVLKEIEN------Q--PKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQL 1401 (1827)
Q Consensus 1330 ~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~------~--~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L 1401 (1827)
++-+..+..+||++|... -++.|.+.+.. + ...|-..++||+.+.... +.. ..+-+|+.+
T Consensus 454 ~~~~~~~LkaLGN~g~p~---~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~------p~~---v~~il~~i~ 521 (1056)
T 1lsh_A 454 EEEIVLALKALGNAGQPN---SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD------PRK---VQEIVLPIF 521 (1056)
T ss_dssp HHHHHHHHHHHHHHTCGG---GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC------HHH---HHHHHHHHH
T ss_pred hHHHHHHHHHhhccCChh---HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc------hHH---HHHHHHHHh
Confidence 778888888899988753 23334433321 1 123344566665543210 111 112234444
Q ss_pred hhhhcCCchhHHHHHHHHHHHhhccCCC-cchHHHHHhhhc-CCHHHHHHHHHHHHHHhhh
Q psy14676 1402 FLHCECQEEGTRNVVAECLGKLTLIDPS-NLLPRLQESLKS-NSALMRTTVLTAVKFTISD 1460 (1827)
Q Consensus 1402 ~~~~~~~~e~vR~~aAecLGkL~~~~p~-~~lP~L~~~l~~-~~~~~R~t~l~Alk~~~~~ 1460 (1827)
.+ ...+.++|-+|...| -..+|. .++..+.+.+.. ++..++..+.+.|+.+...
T Consensus 522 ~n--~~e~~EvRiaA~~~L---m~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 522 LN--VAIKSELRIRSCIVF---FESKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HC--TTSCHHHHHHHHHHH---HHTCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred cC--CCCChHHHHHHHHHH---HHHCcCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 33 233455777665443 334564 688888888875 6899999999999999854
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=84.54 E-value=76 Score=38.04 Aligned_cols=219 Identities=11% Similarity=0.181 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhcccCchHH
Q psy14676 96 RKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDEL 175 (1827)
Q Consensus 96 Rk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~~~del 175 (1827)
|-....-+..++-.-.+.++.++++.+++.-. +.+..+|+..++.+...+....+ ++..+++.+..++.++++.+
T Consensus 42 Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~-d~~~~vRk~~a~FieEa~~~~~e----l~~~~l~~L~~LL~d~d~~V 116 (386)
T 3o2t_A 42 KITVLKQVQELIINKDPTLLDNFLDEIIAFQA-DKSIEVRKFVIGFIEEACKRDIE----LLLKLIANLNMLLRDENVNV 116 (386)
T ss_dssp HHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGG-CSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCHHH
Confidence 33333334444443455677788888886543 45688999999999998875443 35667777777777778888
Q ss_pred HHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCcc
Q psy14676 176 REFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDD 255 (1827)
Q Consensus 176 Re~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD 255 (1827)
...+.+++.. +.|.+++++..+|+.. +..+
T Consensus 117 ~K~~I~~~ts---------------lYpl~f~~i~~~~~~~-----------------------------------~~~e 146 (386)
T 3o2t_A 117 VKKAILTMTQ---------------LYKVALQWMVKSRVIS-----------------------------------ELQE 146 (386)
T ss_dssp HHHHHHHHHH---------------HHHHHHHHHHHC-CCC-----------------------------------HHHH
T ss_pred HHHHHHHHHH---------------HHHHHHHHHhcCCCcc-----------------------------------hhHH
Confidence 8788776644 4567777775544320 0012
Q ss_pred chhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHh-hhcccCCC--CC---CCCC-
Q psy14676 256 MSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLK-GTRTFSPL--TP---SDPN- 328 (1827)
Q Consensus 256 ~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~-~~~~~~~~--~~---~~~~- 328 (1827)
..|..= ..+-..++..+...++.||..++..+..++- ++...... +. .+.+
T Consensus 147 ~~W~~m----------------------~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL 204 (386)
T 3o2t_A 147 ACWDMV----------------------SAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISL 204 (386)
T ss_dssp HHHHHH----------------------HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCG
T ss_pred HHHHHH----------------------HHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCH
Confidence 346521 1111223344566789999999998887663 33221110 00 0000
Q ss_pred CCCCCCCh---HhhHHhhhHHHHHHHHHHhccC--CHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHH
Q psy14676 329 QMDQEDSP---LCLLSTQVPSLVKALQCQLREK--SIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSV 395 (1827)
Q Consensus 329 ~~~~~~~~---~~~l~~~lp~Iv~~l~~~L~d~--~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~ 395 (1827)
.+-+..++ ...|+..-..++..+++.+.++ ++..--+++..|..++..=| .+.+.+++++...
T Consensus 205 ~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP----~~~~rIl~aL~~l 272 (386)
T 3o2t_A 205 DRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRP----MFMSEVIQAYETL 272 (386)
T ss_dssp GGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSG----GGHHHHHHHHHHH
T ss_pred hhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcH----HHHHHHHHHHHhh
Confidence 00011121 2457777788888888888763 23344467766677776655 3456777776654
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=83.24 E-value=19 Score=49.80 Aligned_cols=47 Identities=9% Similarity=0.005 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHhhccCCCcchHHHHHhh--hcCCHHHHHHHHHHHHH
Q psy14676 1410 EGTRNVVAECLGKLTLIDPSNLLPRLQESL--KSNSALMRTTVLTAVKF 1456 (1827)
Q Consensus 1410 e~vR~~aAecLGkL~~~~p~~~lP~L~~~l--~~~~~~~R~t~l~Alk~ 1456 (1827)
..+|..|..+|.+++..+|+.+-+.+.... ...++.+|.+++..+=.
T Consensus 492 ~rvr~aAi~ALr~~~~~~p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~ 540 (1056)
T 1lsh_A 492 TRVQAEAIMALRNIAKRDPRKVQEIVLPIFLNVAIKSELRIRSCIVFFE 540 (1056)
T ss_dssp HHHHHHHHHTTTTGGGTCHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhchHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 347788899999999988888888888888 56789999887776643
|
| >3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.93 E-value=1.2e+02 Score=38.77 Aligned_cols=93 Identities=13% Similarity=0.064 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhccCCCC-chhHHHHHHHhhh--cCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHH
Q psy14676 57 EALDILSDLLSRFGALLP-SFHFVILTALLPQ--LSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTS 133 (1827)
Q Consensus 57 ~al~iL~~l~~~~~~~l~-~~~~~il~~ll~~--L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~ 133 (1827)
.-|..+-..+....+.+. ..+..++.+++.. .-..+..+.+.=+.=|+.++...+ .++...+..++..+... +.
T Consensus 113 ~~L~~~L~aLs~~Vs~Ld~~~~~~LV~aIL~~~~W~~r~~~~v~~Y~~FL~~LvSa~~-~yl~~vl~mLV~~F~~~--~~ 189 (649)
T 3tj1_A 113 KNLNILLDILSSNINRIESSRGTFLIQSIINFEKWWELPPHTLSKYIYFIKILCSSIP-KWWQDVSMILVSCFILP--IK 189 (649)
T ss_dssp HHHHHHHHHHHHTGGGGCSGGGHHHHHHHHTCTTGGGSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHGGGSC--HH
T ss_pred HHHHHHHHHHHhhhhhcCchhHHHHHHHHhCCchhccCCHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHhccCC--Cc
Confidence 335555555566666774 4677788887765 112345677777777888876654 67888888889888643 22
Q ss_pred HHHHHHHHHHHHHHHhchh
Q psy14676 134 TNRTYIQCFAAICRQAGHR 152 (1827)
Q Consensus 134 ~r~~ai~~l~~la~~~~~~ 152 (1827)
.....=.+|..|.+..|-.
T Consensus 190 ~~~~~H~~L~~Il~lvP~s 208 (649)
T 3tj1_A 190 QTVCHHDMLKYFLRMIPSS 208 (649)
T ss_dssp HHHHHHHHHHHHHHHCGGG
T ss_pred ccHHHHHHHHHHHHHcCCC
Confidence 2233556667777766643
|
| >1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 | Back alignment and structure |
|---|
Probab=81.85 E-value=21 Score=41.60 Aligned_cols=148 Identities=19% Similarity=0.264 Sum_probs=110.2
Q ss_pred HhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHH-HHHHHHHHHHHhC
Q psy14676 299 ENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQ-DCLALLRELVQTL 377 (1827)
Q Consensus 299 e~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~-a~~~ll~~L~~vl 377 (1827)
-.||.+++.-+...++.. +.........+|.++.+++.--+...|..|. -.++++..+...+
T Consensus 43 R~vKkeiLkLiet~i~~~-----------------~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl 105 (321)
T 1w9c_A 43 RTVKRETLKLISGWVSRS-----------------NDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKL 105 (321)
T ss_dssp HHHHHHHHHHHHHHHTTC-----------------SCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-----------------CCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHH
Confidence 357788887777776432 1233456777899888888877777788887 8888899999999
Q ss_pred cccccCchhhHHHHHHHH----hhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHH
Q psy14676 378 PGCLAPSLPALIPDVTSV----AEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIA 453 (1827)
Q Consensus 378 ~~~l~~~l~~Llp~i~~~----L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~ 453 (1827)
++.+.+.+|.++..+..+ .+++ -+| -.-.|..-.+.+..+..
T Consensus 106 ~~~i~~~vp~Il~~VFe~TL~MI~~d---------------------------f~e-------yPehR~~Ff~LL~ai~~ 151 (321)
T 1w9c_A 106 GGHITAEIPQIFDAVFECTLNMINKD---------------------------FEE-------YPEHRTNFFLLLQAVNS 151 (321)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHHSST---------------------------TTC-------SHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhcc---------------------------ccc-------ChHHHHHHHHHHHHHHH
Confidence 998888888888886544 3210 011 23488888999999998
Q ss_pred Hhhhh-hh---hhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcc
Q psy14676 454 TRRDL-IG---DMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTR 497 (1827)
Q Consensus 454 ~~~~~-f~---~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g 497 (1827)
++... |. +.|..++..++-.++...++|.+.+++.+.++++.++
T Consensus 152 ~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 152 HCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp HCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 87744 33 4677777777777888999999999999999998764
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=80.16 E-value=34 Score=39.94 Aligned_cols=206 Identities=18% Similarity=0.238 Sum_probs=120.9
Q ss_pred HhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHH
Q psy14676 284 RLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTR 363 (1827)
Q Consensus 284 ~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR 363 (1827)
..++..|+..+..=+++.|.++...|..+++.-.... -.+..++.. =|.|+..++++... +++-
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~-------------~p~v~Yl~~-~peil~~L~~gYe~--~diA 140 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTR-------------TPTVEYICT-QQNILFMLLKGYES--PEIA 140 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTB-------------CHHHHHHHT-CTHHHHHHHHGGGS--TTTH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCC-------------CchhHHHHc-CHHHHHHHHHhhcc--chhH
Confidence 3567778888888899999999999999997431100 113356666 48888999988753 4455
Q ss_pred HHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHH
Q psy14676 364 QDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRA 443 (1827)
Q Consensus 364 ~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~ 443 (1827)
..|-.+|+++... +.+... +|.
T Consensus 141 l~~G~mLRecir~---------e~la~~---iL~---------------------------------------------- 162 (341)
T 1upk_A 141 LNCGIMLRECIRH---------EPLAKI---ILW---------------------------------------------- 162 (341)
T ss_dssp HHHHHHHHHHHTS---------HHHHHH---HHH----------------------------------------------
T ss_pred hHHHHHHHHHHHh---------HHHHHH---Hhc----------------------------------------------
Confidence 5555555555432 111111 110
Q ss_pred HHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhch
Q psy14676 444 AAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQ 523 (1827)
Q Consensus 444 a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~ 523 (1827)
.+.|..+ +.+.......|..+|+.++.+|+..... + ..+.+...
T Consensus 163 ------------~~~f~~f--------F~yv~~~~FdiasDAf~TfkelLt~Hk~---l-------------vaefL~~n 206 (341)
T 1upk_A 163 ------------SEQFYDF--------FRYVEMSTFDIASDAFATFKDLLTRHKL---L-------------SAEFLEQH 206 (341)
T ss_dssp ------------SGGGGHH--------HHHTTCSSHHHHHHHHHHHHHHHHSSHH---H-------------HHHHHHHT
T ss_pred ------------cHHHHHH--------HHHhcCCCchHHHHHHHHHHHHHhccHH---H-------------HHHHHHHh
Confidence 0122222 2356667778888888888888764331 0 01122233
Q ss_pred hhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhH
Q psy14676 524 VPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEV 603 (1827)
Q Consensus 524 ~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV 603 (1827)
-..++.....-+...+-.++-..+..|.+.+-|+ .|+.+|. . ....+.-+.+++.+|.|++.-+
T Consensus 207 yd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr-~N~~vM~-----~----------Yis~~~nLkl~M~LL~d~sk~I 270 (341)
T 1upk_A 207 YDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDR-HNFTIMT-----K----------YISKPENLKLMMNLLRDKSRNI 270 (341)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSG-GGHHHHH-----H----------HTTCHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCc-hHHHHHH-----H----------HhCCHHHHHHHHHHhcCchhch
Confidence 3445555555555555445555666666655553 1111111 0 1123566788999999999999
Q ss_pred HHHHHHhhhhHH
Q psy14676 604 QNLAVKCLGPLF 615 (1827)
Q Consensus 604 ~~~A~~~lg~l~ 615 (1827)
|..|.-...-.|
T Consensus 271 q~EAFhVFKvFV 282 (341)
T 1upk_A 271 QFEAFHVFKVFV 282 (341)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhhhheeeee
Confidence 999988665443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1827 | ||||
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 1e-124 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 6e-73 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 7e-46 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-41 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 8e-16 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 3e-04 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 0.002 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 9e-12 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 8e-11 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 2e-08 | |
| d1qgra_ | 876 | a.118.1.1 (A:) Importin beta {Human (Homo sapiens) | 2e-10 | |
| d1qgra_ | 876 | a.118.1.1 (A:) Importin beta {Human (Homo sapiens) | 3e-08 | |
| d1qgra_ | 876 | a.118.1.1 (A:) Importin beta {Human (Homo sapiens) | 4e-06 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 4e-10 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 2e-07 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 1e-08 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 1e-04 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.002 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.002 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 6e-07 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 6e-07 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 2e-06 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 2e-05 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 419 bits (1076), Expect = e-124
Identities = 410/1269 (32%), Positives = 604/1269 (47%), Gaps = 124/1269 (9%)
Query: 547 LALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNL 606
++ L E MTSSDKDFRFMATNDLM+ELQKDSIKLDDDSERKVVKM+L+LLEDKNGEVQNL
Sbjct: 5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNL 64
Query: 607 AVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVN 666
AVKCLGPL + + + L + L + + L T++
Sbjct: 65 AVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRD-----------ISSIGLKTVIGE 113
Query: 667 YPSAISTEMLNKVTVE------LAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAAS 720
P A S L + + + + D+ + L ++ + Q L S
Sbjct: 114 LPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLL-VNFHPS 172
Query: 721 ILPQVLQIAKSP--LLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHK 778
IL +L SP ++ + ++ ++ + F +L+ L++ +
Sbjct: 173 ILTCLLPQLTSPRLAVRKRTIIAL-----GHLVMSCGNIVFVDLIEHLLSELSKND--SM 225
Query: 779 QAFHSLAKCVAALAITVQREALP----VVEKFLKELKTNKDDAHQVTIVALSHLVMSCNL 834
+ +C+AA++ ++ +K + D+ + I A V C
Sbjct: 226 STTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK 285
Query: 835 QLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEH 894
++ + +I+ L+ LT + + + + +
Sbjct: 286 EVY-------------PHVSTIINICLKYLTYDPNYNYDDE-----DEDENAMDADGGDD 327
Query: 895 IERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQV 954
++ + ++R + +A V + + +++ + V
Sbjct: 328 DDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENV 387
Query: 955 ILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEE 1014
+ F +K + S + + LQ VP I L + +
Sbjct: 388 KADVFHAYLSLLKQTRP--VQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSV 445
Query: 1015 GTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNE 1074
TR L +L + P L + + + S+ + + N
Sbjct: 446 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNH 505
Query: 1075 ETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDI 1134
+ L+ PV+A VGD FYKIT+EALLV QQ VKVIRPL PSS+D P+ D+
Sbjct: 506 SPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDL 565
Query: 1135 YQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTT 1194
+ CT+ RLKAADIDQEVKERAISCMGQIICNLGD L S+LP L I L+RL+NEITRLTT
Sbjct: 566 FTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTT 625
Query: 1195 VKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTE 1254
VKALT IA SPL+IDLRP+L +G+PIL SFLRKNQRALKL TL LD L+ NY +++
Sbjct: 626 VKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAA 685
Query: 1255 MLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQP-----------NALVEPAAASILP 1303
M++ V EL PL+SESD+H++Q+ ++ LT++AK+ P N L+ + +L
Sbjct: 686 MIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQ 745
Query: 1304 QIGRHTDLTSVA-------------DLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQ 1350
L DL +++ S + SY + V L +
Sbjct: 746 GGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTR 805
Query: 1351 YVPFVLKEIENQPKRQYLLLHSLKEIISWQSTSTSGVAQ--LQQFVPAIWAQLFLHCECQ 1408
P + Q + S I S V + + +
Sbjct: 806 ACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSP 865
Query: 1409 EEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKD 1468
E ++ + LG +++ + LP + + + S
Sbjct: 866 SEEVKSAASYALGSISVGNLPEYLPFVLQEITS------------------------QPK 901
Query: 1469 FRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKE 1528
+++ + L + S+ + +LL+ E +N+ +CLG L
Sbjct: 902 RQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTL---- 957
Query: 1529 FQVETIVDALCSNMVSDKEQLRDISSIGLKTVIS------------VVYCLGDRNSSSNM 1576
ET++ L ++S R +K IS + ++
Sbjct: 958 IDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDL 1017
Query: 1577 KIDTLAFTHTLLTT--HPPAVFHPHIHILLPPVI----IIKTLIREVEMGPFKHTVDDGL 1630
+ +A T + + P++ + +LP + + K LIREVEMGPFKHTVDDGL
Sbjct: 1018 NVRRVALV-TFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGL 1076
Query: 1631 DIRKAAFECMYTLLDTCLDRVDMFEFLNHLESGLRDHYDIKMLTYLMLARLAQMTPAALL 1690
DIRKAAFECMYTLLD+CLDR+D+FEFLNH+E GL+DHYDIKMLT+LML RL+ + P+A+L
Sbjct: 1077 DIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVL 1136
Query: 1691 QRLERIVEPLRNTVTLKVKANSVKQEYEKQDELKRSAMRAVAALLTIQDADKNPALNDFV 1750
QRL+R+VEPLR T T KVKANSVKQE+EKQDELKRSAMRAVAALLTI +A+K+P +++F
Sbjct: 1137 QRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMSEFQ 1196
Query: 1751 ATIKNSPEL 1759
+ I ++PEL
Sbjct: 1197 SQISSNPEL 1205
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 265 bits (678), Expect = 6e-73
Identities = 296/969 (30%), Positives = 453/969 (46%), Gaps = 45/969 (4%)
Query: 1 MVSDKEQLRDISSIGLKTVISELPLGS--NALAANVCRRITGKLSTAIEKQEDVSVQLEA 58
M+SDKEQLRDISSIGLKTVI ELP S +ALAANVC++ITG+L++AI KQEDVSVQLEA
Sbjct: 92 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEA 151
Query: 59 LDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKL 118
LDI++D+LSR G LL +FH ILT LLPQL+SPR AVRKRTI+AL HLVMSC ++ L
Sbjct: 152 LDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL 211
Query: 119 IDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREF 178
I+ LL L+ N S ST RTYIQC AAI RQAGHR E++E+++PL++K+ +DDELRE+
Sbjct: 212 IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREY 271
Query: 179 CLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEE 238
C+QA E+FV+RCPKE+ PH+ +I +CL Y+TYDPNYNY+DE+E +
Sbjct: 272 CIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDE-------NAMDADG 324
Query: 239 DGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKERE 298
+D+ D+EYSDDDDMSWKVRRAAAKCL+A+++TR +++ + Y+ VSP LI+RFKERE
Sbjct: 325 GDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKERE 384
Query: 299 ENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREK 358
ENVK+D+FHAY++LLK TR DP+ M+Q ++PL +L +QVP++VKAL Q++EK
Sbjct: 385 ENVKADVFHAYLSLLKQTRPVQSWL-CDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEK 443
Query: 359 SIRTRQDCLALLRELVQTLPGCLAPSLPALIPDV-TSVAEWDEEEGLGGEGGGEGMDTEE 417
S++TRQ C +L ELV LPG L +P L+P + S+ + L +
Sbjct: 444 SVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILC 503
Query: 418 EDGEDEGEDDNEYSDD------DDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLI 471
+ D +K+ A + ++ R L +P +
Sbjct: 504 NHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIK 563
Query: 472 ARFKEREENVKSDIFHA----------YMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLS 521
F + +K+ + P+ +
Sbjct: 564 DLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRL 623
Query: 522 TQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLD 581
T V +L L+ + + +L + + + + + L ++ S L
Sbjct: 624 TTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLT 683
Query: 582 DDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPIL 641
V+ L L+ + + V +A+ L L K + L ++ L
Sbjct: 684 AAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPL 743
Query: 642 GSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTL 701
AL ++ + ++L +T + + + ++
Sbjct: 744 -----LQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAK 798
Query: 702 LTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSE 761
+ + V + ++ AL S+ E + L+ L S
Sbjct: 799 CVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLEL-KSV 857
Query: 762 LLNMLIAPVMTGTALHKQAFHSLAKCVAALAI-----------TVQREALPVVEKFLKEL 810
+L +P + A S++ + Q L +++ +
Sbjct: 858 ILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSA 917
Query: 811 KTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKST 870
+ I AL C + T ++ + L L+ L L + S+
Sbjct: 918 SVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYL-ISGSS 976
Query: 871 STNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPK 930
+ + ++ + LK + D +R L + P
Sbjct: 977 YARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPS 1036
Query: 931 EITPHIQSI 939
I + ++
Sbjct: 1037 LIRDLLDTV 1045
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 179 bits (454), Expect = 7e-46
Identities = 201/1128 (17%), Positives = 374/1128 (33%), Gaps = 128/1128 (11%)
Query: 434 DDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALL 493
+D + +V+ A KCL +++ ++ + L +E ++ L
Sbjct: 55 EDKNGEVQNLAVKCLGPLVSKVKE---YQVETIVDTLCTNMLSDKEQLRD----ISSIGL 107
Query: 494 KGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLREL 553
K P S + L A+ +++ + + + L ++ ++
Sbjct: 108 KTVIGELPPASSGSALAAN------VCKKITGRLTSAIA---KQEDVSVQLEALDIMADM 158
Query: 554 MTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGP 613
++ + ++ LL L V+ + LG
Sbjct: 159 LSRQGGLL--------------------VNFHPSILTCLLPQLTSPRLAVRKRTIIALGH 198
Query: 614 LFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAIST 673
L + I L L L + + + + + + + I
Sbjct: 199 LVMSCGNIVFVDLIEHL----------LSELSKNDSMSTTRTYIQCIAAISRQAGHRIGE 248
Query: 674 EMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPL 733
+ + + + + D + + + S + P V P ++I+ L+
Sbjct: 249 YLEKIIPLVVK-FCNVDDDELREYCIQAFESFVRRCPK-EVYPHVSTIINICLKYLTYDP 306
Query: 734 LQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAI 793
E + + + + ++ +
Sbjct: 307 NYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLP 366
Query: 794 TVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLY 853
+ P + KE + N ++L L + L
Sbjct: 367 EFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQ 426
Query: 854 TKLIDFL--LEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSRE--E 909
+++ + + L KS T + + +HI ++P I+ +
Sbjct: 427 SQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSS 486
Query: 910 DDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSA 969
L+ L + ++ + ++ S
Sbjct: 487 SSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPV-----------VACVGDPFYKITSE 535
Query: 970 ASYTLGSIAEIIS--WQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKL 1027
A + ++I Q +S ++ +L QE R +
Sbjct: 536 ALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMG---- 591
Query: 1028 TLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLL 1087
NL L L + + ++ T ++ + + + +
Sbjct: 592 --QIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGV 649
Query: 1088 SPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADI 1147
+ + + N + L L +K + + D + ++
Sbjct: 650 PILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDA--------VLDELPPLISES 701
Query: 1148 DQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIAASPLR 1207
D V + AIS + + L L L+ +R+ + + + A+ + +
Sbjct: 702 DMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVV 761
Query: 1208 IDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLV 1267
+ + +L + + + + +A L
Sbjct: 762 TGTNNLGYMDLL-----------------RMLTGPVYSQSTALTHKQSYYSIAKCVAALT 804
Query: 1268 SESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTP 1327
+ + + + + A L ++G H DL+ +LK VIL AF+
Sbjct: 805 RACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSS 864
Query: 1328 TSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIENQPKRQYLLLHSLKEIISWQSTSTSGV 1387
SEEVKSAASY LGSI+VGNL +Y+PFVL+EI +QPKRQYLLLHSLKEII S++ V
Sbjct: 865 PSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEII-----SSASV 919
Query: 1388 AQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMR 1447
L+ +V IWA L HCEC EEGTRNVVAECLGKLTLIDP LLPRL+ L S S+ R
Sbjct: 920 VGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYAR 979
Query: 1448 TTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDK 1507
++V+TAVKFTISD D + + L+ LED
Sbjct: 980 SSVVTAVKFTISDHPQPI------------------------DPLLKNCIGDFLKTLEDP 1015
Query: 1508 NGEVQNLAVKCLGPLVNKVKEF---QVETIVDALCSNMVSDKEQLRDI 1552
+ V+ +A+ + ++T++ L + KE +R++
Sbjct: 1016 DLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREV 1063
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 165 bits (417), Expect = 2e-41
Identities = 213/1044 (20%), Positives = 381/1044 (36%), Gaps = 138/1044 (13%)
Query: 62 LSDLLSRFGALLPSFHFV----ILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTK 117
+DL++ ++ +L L V+ + L LV
Sbjct: 24 TNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVET 83
Query: 118 LIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEH------IERVMPLILKY-SRE 170
++D L + ++K + + + +++ + +++
Sbjct: 84 IVDTLCTNMLSDKE-QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ 142
Query: 171 EDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGG 230
ED ++ L + R + SI L +
Sbjct: 143 EDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQL--------------------- 181
Query: 231 EGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPL 290
VR+ L ++ + + ++ + L
Sbjct: 182 -----------------------TSPRLAVRKRTIIALGHLVMSCGN---IVFVDLIEHL 215
Query: 291 IARFKEREE-NVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVK 349
++ + + + A+ + + + ++
Sbjct: 216 LSELSKNDSMSTTRTYIQCIAAISRQAG--------------------HRIGEYLEKIIP 255
Query: 350 ALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGG 409
+ R+ C+ V+ P + P + +I +D E
Sbjct: 256 LVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDE 315
Query: 410 GEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPP 469
E + +D+ D+EYSDDDDMSWKVRRAAAKCL+A+++TR +++ + Y+ VSP
Sbjct: 316 DENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPA 375
Query: 470 LIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVK 529
LI+RFKEREENVK+D+FHAY++LLK TR DP+ M+Q ++P+ +L +QVP++VK
Sbjct: 376 LISRFKEREENVKADVFHAYLSLLKQTRPVQSWL-CDPDAMEQGETPLTMLQSQVPNIVK 434
Query: 530 ALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSER-KV 588
AL Q++EKS++TRQ C +L EL+ + + + K + +
Sbjct: 435 ALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDA 494
Query: 589 VKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKN 648
+ L +L + + +V + V+ L P A + + + + ++ + +
Sbjct: 495 LSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPS 554
Query: 649 QRALKLSTLLLLDTLLVN-YPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAK 707
L + + I E+ + + ++ ++ L +
Sbjct: 555 SFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLE 614
Query: 708 IQPNALVEPAAASILPQVLQIAKSPLLQG--AALTSMLEFFKSLVLAELPGLSFSELLNM 765
N + L + L+ +L F L + S L +
Sbjct: 615 RLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDIL 674
Query: 766 LIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKEL------KTNKDDAHQ 819
+ + TA A + + + + L ++ K + ++
Sbjct: 675 IKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNE 734
Query: 820 VTIVALSHLVMSCNLQLTIVALSHLVMSCN-----LQLYTKLIDFLLEGLTTNKSTSTNR 874
+ + S L+ L + LV++ + L L + T +
Sbjct: 735 LIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYY 794
Query: 875 TYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITP 934
+ +C AA+ R + + + + D +R L +
Sbjct: 795 SIAKCVAALTRACPKEGPAVVGQFIQDVKN--SRSTDSIRLLALLS-------------- 838
Query: 935 HIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIIS------------ 982
+ +G H DL+ +LK VIL AF+ SEEVKSAASY LGSI+
Sbjct: 839 -LGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEIT 897
Query: 983 -------------WQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTL 1029
+ S++ V L+ +V IWA L HCEC EEGTRNVVAECLGKLTL
Sbjct: 898 SQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTL 957
Query: 1030 IDPSNLLPRLQESLKSNSALMRTT 1053
IDP LLPRL+ L S S+ R++
Sbjct: 958 IDPETLLPRLKGYLISGSSYARSS 981
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.3 bits (199), Expect = 8e-16
Identities = 134/1209 (11%), Positives = 336/1209 (27%), Gaps = 94/1209 (7%)
Query: 254 DDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALL 313
+D + +V+ A KCL +++ ++ + L +E ++ L
Sbjct: 55 EDKNGEVQNLAVKCLGPLVSKVKE---YQVETIVDTLCTNMLSDKEQLRD----ISSIGL 107
Query: 314 KGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLREL 373
K P S + L A+ +++ + + + L ++ ++
Sbjct: 108 KTVIGELPPASSGSALAAN------VCKKITGRLTSAIA---KQEDVSVQLEALDIMADM 158
Query: 374 VQTLPGCLAPSLPALIPDVTSVAEWDEEE--GLGGEGGGEGMDTEEEDGEDEGEDDNEYS 431
+ G L P+++ + G + + + +
Sbjct: 159 LSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSE 218
Query: 432 DDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMA 491
+ S R +C+ AI IG+ + P ++ ++ ++ A+ +
Sbjct: 219 LSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFES 278
Query: 492 LLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLR 551
++ R + P ++ + + +
Sbjct: 279 FVR--RCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEY 336
Query: 552 ELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCL 611
R A L + + L + + V L+ +++ V+
Sbjct: 337 SDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK-TVSPALISRFKEREENVKADVFHAY 395
Query: 612 GPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAI 671
L K + + D P +
Sbjct: 396 LSLLKQTRPVQSWLCDPDAMEQGET-------------------------------PLTM 424
Query: 672 STEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKS 731
+ + L + E + Q +LT + + P AL ++P ++
Sbjct: 425 LQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGAL-TQHIPVLVPGIIFSLND 483
Query: 732 PLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAAL 791
L ++ P + + ++ V + L
Sbjct: 484 KSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQL 543
Query: 792 AITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQ 851
++ P +K + A + + + +
Sbjct: 544 VKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGS 603
Query: 852 LYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDD 911
+ LE L + T + A + + +P++ + R+
Sbjct: 604 DLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKI--DLRPVLGEGVPILASFLRKNQR 661
Query: 912 ELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAAS 971
L+ L A + ++ +T + +++ + +
Sbjct: 662 ALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYP 721
Query: 972 YTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHC--ECQEEGTRNVVAECLGKLTL 1029
+L I+ I + LQ + F + L
Sbjct: 722 SSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVY 781
Query: 1030 IDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSP 1089
+ L + + T + V+ Q ++ T I L
Sbjct: 782 SQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGE 841
Query: 1090 VIASVGDNFYKITAEALL-VLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADID 1148
V + + +L + ++ S + + Y + L+
Sbjct: 842 VGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFV--LQEITSQ 899
Query: 1149 QEVKERAISCMGQIICNLG-DYLKSELPVCLPILLDRLR--NEITRLTTVKALTKIAASP 1205
+ + + + +II + LK + +LL E TR + L K+
Sbjct: 900 PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLI- 958
Query: 1206 LRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAP 1265
+P L +L + S + + + ++P I +L +
Sbjct: 959 -------DPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPID-PLLKNCIGDFLK 1010
Query: 1266 LVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAF 1325
+ + DL++ ++ L S A +P +L+ ++LP + T + +++V + F
Sbjct: 1011 TLEDPDLNVRRVALVTFNSAAHNKP-SLIRDLLDTVLPHLYNETKVRK-ELIREVEMGPF 1068
Query: 1326 TPT---SEEVKSAASYTLGSI-----AVGNLQQYVPFVLKEIENQPKRQYLLLHSLKEII 1377
T +++ AA + ++ ++ +++ V +++ + L L +
Sbjct: 1069 KHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDHYDIKMLTFLMLVRLS 1128
Query: 1378 SWQSTSTSGVAQLQQFVPAIWAQLFLHC---------ECQEEGTRNVVAECLGKLTLIDP 1428
+ ++ + +L + V + A E Q+E R+ + + L I
Sbjct: 1129 TLCPSAV--LQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAM-RAVAALLTIPE 1185
Query: 1429 SNLLPRLQE 1437
+ P + E
Sbjct: 1186 AEKSPLMSE 1194
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (100), Expect = 3e-04
Identities = 39/270 (14%), Positives = 84/270 (31%), Gaps = 36/270 (13%)
Query: 42 LSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIV 101
+ + S++L AL L ++ S + + +L SSP + V+
Sbjct: 819 IQDVKNSRSTDSIRLLALLSLGEVGHHID---LSGQLELKSVILEAFSSPSEEVKSAASY 875
Query: 102 ALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVM 161
AL + + + + F+L+ +T+ I + ++E +
Sbjct: 876 ALGSISVGN----LPEYLPFVLQEITSQPKRQYLL-LHSLKEIISSASVVGLKPYVENIW 930
Query: 162 PLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEE 221
L+LK+ ++ R + P+ + P ++ +
Sbjct: 931 ALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLI--------SGSSYARSS- 981
Query: 222 EGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDD---------DDMSWKVRRAAAKCLEAII 272
+ + D + + + +D VRR A +
Sbjct: 982 ----------VVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAA 1031
Query: 273 ATRRDLIGDMYRLVSPPLIARFKEREENVK 302
+ LI D+ V P L K R+E ++
Sbjct: 1032 HNKPSLIRDLLDTVLPHLYNETKVRKELIR 1061
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (94), Expect = 0.002
Identities = 60/458 (13%), Positives = 117/458 (25%), Gaps = 76/458 (16%)
Query: 48 KQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIV------ 101
++ +++L L L L+ + L + + LP L S + +
Sbjct: 657 RKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTL 716
Query: 102 --ALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIER 159
+ + + +LI + L + S + Q
Sbjct: 717 AKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRML 776
Query: 160 VMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYED 219
P+ + + + + A + CPKE + + + D
Sbjct: 777 TGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLAL 836
Query: 220 EEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLI 279
G G E + E S +V+ AA+ L +I
Sbjct: 837 LSLGEVGHHIDLSGQLELKSVILEAFSSP--------SEEVKSAASYALGSISVGNLPEY 888
Query: 280 GDMYRLVSPPLIARFKEREENVKSDIFHAYMALLK--GTRTFSPLTP----------SDP 327
P + + + + + H+ ++ P
Sbjct: 889 --------LPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECA 940
Query: 328 NQMDQEDSPLC---LLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPS 384
+ + C L +L+ L+ L S R + ++ + P + P
Sbjct: 941 EEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPL 1000
Query: 385 LPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAA 444
L I D +D VRR A
Sbjct: 1001 LKNCIGDFLKTL-------------------------------------EDPDLNVRRVA 1023
Query: 445 AKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVK 482
+ + LI D+ V P L K R+E ++
Sbjct: 1024 LVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIR 1061
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.8 bits (164), Expect = 9e-12
Identities = 114/917 (12%), Positives = 266/917 (29%), Gaps = 129/917 (14%)
Query: 42 LSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIV 101
+ T ++ +++ + L L + +++ + F I + L + +R +
Sbjct: 51 VLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGI 110
Query: 102 ALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAG-----HRFAEH 156
++ + LQ + L+ L L + +T IC +
Sbjct: 111 LITTIASKGELQNWPDLLPKLCSLLDSE-DYNTCEGAFGALQKICEDSAEILDSDVLDRP 169
Query: 157 IERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYN 216
+ ++P L++ + ++R + F+ + + HI S TE
Sbjct: 170 LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAG------ 223
Query: 217 YEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR 276
D +VR+ + L ++ R
Sbjct: 224 --------------------------------------DEEPEVRKNVCRALVMLLEVRM 245
Query: 277 DLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSP 336
D + + ++ R ++++ENV + ++ L + L
Sbjct: 246 DRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRH----------- 294
Query: 337 LCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVA 396
L +P LV ++ L E +T+P P T
Sbjct: 295 ---LPKLIPVLVNGMKYS------DIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQ 345
Query: 397 EWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR 456
+ DE+ EEED +D+ DD DD W +R+ +A L+ + R
Sbjct: 346 QHDED------------GIEEEDDDDDEIDD----DDTISDWNLRKCSAAALDVLANVYR 389
Query: 457 DLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSP 516
D + + L+ + + + A D
Sbjct: 390 DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKK 449
Query: 517 VCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKD 576
+ S +L + + + + + L + + S+K + A + L+++
Sbjct: 450 ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQ-EAACSAFATLEEE 508
Query: 577 SIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASP----------- 625
+ ++ L+ + + +G L ++ P
Sbjct: 509 ACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLI 568
Query: 626 ----LRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTV 681
+ D L + L S Q + + ++ MLN
Sbjct: 569 QKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQP 628
Query: 682 ELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIA---KSPLLQGAA 738
+ D + L LL+ +A+ + + A S + ++ K P ++ ++
Sbjct: 629 DQY---EAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSS 685
Query: 739 LTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQRE 798
+ + K+ P + ++ + +L + + ++I + E
Sbjct: 686 FALLGDLTKACFQHVKPCI--ADFMPILGTNLNPEFISVCNNA---TWAIGEISIQMGIE 740
Query: 799 ALPVVEKFLKELKTNKDDAHQVTIVALSH-LVMSCNLQLTIVALSHLVMSCNLQLYTKLI 857
P + L +L + ++ L+ T + + L C ++ L
Sbjct: 741 MQPYIPMVLHQL-----------VEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQ 789
Query: 858 DFL---LEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELR 914
F+ L + + + + + + + D+LR
Sbjct: 790 QFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASW-INPKDDLR 848
Query: 915 EFCLQACEAFVQRCPKE 931
+ + F + E
Sbjct: 849 DMFCKILHGFKNQVGDE 865
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.7 bits (156), Expect = 8e-11
Identities = 85/667 (12%), Positives = 203/667 (30%), Gaps = 54/667 (8%)
Query: 544 QDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERK----VVKMLLRLLEDK 599
D L L L+ S D + A L + + LD D + ++ L+ +
Sbjct: 125 PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHS 184
Query: 600 NGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLL 659
+ ++++ AV C+ + T+ L + L + + ++ +
Sbjct: 185 SPKIRSHAVACVNQFIISRTQ--------ALMLHIDSFTENLFALAGDEEPEVRKNVCRA 236
Query: 660 LDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAA 719
L LL + M N V L + + + LT + ++
Sbjct: 237 LVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLP 296
Query: 720 SILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGL-SFSELLNMLIAPVMTGTALHK 778
++P ++ K + L +E +++ +E F + G
Sbjct: 297 KLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEED 356
Query: 779 QAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTI 838
+ +++ + ++ + + L + I
Sbjct: 357 DDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGI 416
Query: 839 VALSHLVMSCNLQLYTKLIDFL--LEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAE-HI 895
+ L + C + L + + L ++K + + + ++
Sbjct: 417 LVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL 476
Query: 896 ERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVI 955
+ +M +LK + + ++E A + E+ P++ + +
Sbjct: 477 KPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLA------------YILDTL 524
Query: 956 LNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEG 1015
+ AF+ + +G++A+ + + L + W L +
Sbjct: 525 VFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFP- 583
Query: 1016 TRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEE 1075
+ ECL + S LP + + ++ + + D + ++
Sbjct: 584 ----LLECLSSVATALQSGFLPYCEPVY---QRCVNLVQKTLAQAMLNNAQPDQYEAPDK 636
Query: 1076 TSFIYSFYYFLLSPVIASVGDNFYKITAEALL--------------VLQQFVKVIRPLTS 1121
I + LLS + +G N ++ A + + V Q ++ LT
Sbjct: 637 DFMIVALD--LLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTK 694
Query: 1122 PSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPIL 1181
P +D L I V A +G+I +G ++ +P+ L L
Sbjct: 695 ACFQHVKPCIADFMPILGTNLNPEFI--SVCNNATWAIGEISIQMGIEMQPYIPMVLHQL 752
Query: 1182 LDRLRNE 1188
++ +
Sbjct: 753 VEIINRP 759
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.4 bits (137), Expect = 2e-08
Identities = 93/769 (12%), Positives = 224/769 (29%), Gaps = 53/769 (6%)
Query: 688 SESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQ--IAKSPLLQGAALTSMLEF 745
D L+ +L + K I + L SPL++ +
Sbjct: 56 KSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTI 115
Query: 746 FKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQ-AFHSLAKCVAALAITVQREALPVVE 804
L P +LL L + + + + AF +L K A + + V++
Sbjct: 116 ASKGELQNWP-----DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSD---VLD 167
Query: 805 KFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEG- 863
+ L + + H S ++ VA + + Q ID E
Sbjct: 168 RPLNIMIPK-------FLQFFKH--SSPKIRSHAVACVNQFIISRTQALMLHIDSFTENL 218
Query: 864 --LTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQAC 921
L ++ + + + R H+ ++ +L+ ++++D+ + L+AC
Sbjct: 219 FALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVA---LEAC 275
Query: 922 EAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEII 981
E ++ + I + + L V + + S +I
Sbjct: 276 EFWLTLAEQPICKDVL-VRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIR 334
Query: 982 SWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQE 1041
S + Q + + + + + +C + + L
Sbjct: 335 PRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLP 394
Query: 1042 SLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKI 1101
+ + H+ + I+ I + + + L+ +I + D +
Sbjct: 395 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ--GMIPYLPELIPHLIQCLSDKKALV 452
Query: 1102 TAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQ 1161
+ L ++ + + + L R+ D ++ V+E A S
Sbjct: 453 RSITCWTLSRYAHWVVS------QPPDTYLKPLMTELLKRIL--DSNKRVQEAACSAFAT 504
Query: 1162 IICNLGDYLKSELPVCLPILLDRL-----RNEITRLTTVKALTKIAASPLRIDLRPILTD 1216
+ L L L L+ +N + + L L +
Sbjct: 505 LEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLM 564
Query: 1217 GIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQ 1276
I + K++ L L ++ S + + +
Sbjct: 565 PPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLN 624
Query: 1277 LTLTLLTSIAKIQPNALVEPAAASILPQIGRHT-DLTSVADLKQVILNAFTPTSEEVKSA 1335
+ + + +G + L + +++ ++ EV+ +
Sbjct: 625 NAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQS 684
Query: 1336 ASYTLGSIAVG---NLQQYVPFVLKEIENQPKRQYLLLHSLKEIISWQ--STSTSGVAQL 1390
+ LG + +++ + + + +++ S+ +W S ++
Sbjct: 685 SFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFI---SVCNNATWAIGEISIQMGIEM 741
Query: 1391 QQFVPAIWAQLFLHCECQE--EGTRNVVAECLGKLTLIDPSNLLPRLQE 1437
Q ++P + QL + A +G+L + P + P LQ+
Sbjct: 742 QPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQ 790
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.0 bits (154), Expect = 2e-10
Identities = 84/727 (11%), Positives = 206/727 (28%), Gaps = 101/727 (13%)
Query: 537 EKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLL 596
S R ++ +TS D D + ++ Q+ + +D ++ R+V +L L
Sbjct: 48 GNSQVARVAAGLQIKNSLTSKDPDIK--------AQYQQRWLAIDANARREVKNYVLHTL 99
Query: 597 EDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQ--RALKL 654
+ + + + IA + + ++ P + IP L + + +K
Sbjct: 100 GTETYRPSSASQ--------CVAGIACAEIPVNQWP---ELIPQLVANVTNPNSTEHMKE 148
Query: 655 STLLLLDTLLVNYPSAISTEMLNKVTVELAPLV---SESDLHIAQLTLTLLTSIAKIQPN 711
STL + + + + N++ + + S+ T LL S+ + N
Sbjct: 149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN 208
Query: 712 ALVEPAAASILPQVLQIAKSP-----LLQGAALTSMLEFFKSLVLAELPGLSFSELLNML 766
E I+ V + + P + L ++ + + + F+ + +
Sbjct: 209 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM 268
Query: 767 -----------------IAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKE 809
+ A+ + + + AL + L +
Sbjct: 269 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ 328
Query: 810 LKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKS 869
T +D+ C + L +V + F+ E +
Sbjct: 329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHV--------LPFIKEHIKNPDW 380
Query: 870 TSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCP 929
+ + + + + + MP +++ ++ +R+ + P
Sbjct: 381 RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440
Query: 930 KEITPHIQ-----------------------------SIGRHTDLTSVADLKQVILNAFT 960
+ + + + D ++ +
Sbjct: 441 EAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLS 500
Query: 961 PTSEEVKSAASYTLGSIAE-----IISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEG 1015
+ E + T S + V + + L + +
Sbjct: 501 SSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQ 560
Query: 1016 TRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEE 1075
+ + I ++L L +L++ ++ + V+ +
Sbjct: 561 VLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAG 620
Query: 1076 TSFIYSFYYFLLSPVIASVGDNFYKI-------------TAEALLVLQQFVKVIRPLTSP 1122
+ + +S ++ +G F K V V ++ L
Sbjct: 621 SGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRA 680
Query: 1123 SSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILL 1182
+ PF ++ Q L L ++ + VK + +S G I +G K L V L L
Sbjct: 681 LQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQ 740
Query: 1183 DRLRNEI 1189
+ ++
Sbjct: 741 QASQAQV 747
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.3 bits (134), Expect = 3e-08
Identities = 84/775 (10%), Positives = 216/775 (27%), Gaps = 78/775 (10%)
Query: 249 EYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHA 308
+ + + ++ + + + I +D+ + + S ++ + +
Sbjct: 135 ANVTNPNSTEHMKESTLEAIGYIC---QDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVK 191
Query: 309 YMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLA 368
A + + + ++ +++ + + R R L
Sbjct: 192 LAATNALLNSLEFTKANFDKESER------------HFIMQVVCEATQCPDTRVRVAALQ 239
Query: 369 LLRELVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDN 428
L +++ + + + +T A + + + +G + +E+ + E
Sbjct: 240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE 299
Query: 429 EYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHA 488
+ A L+ ++ + K +
Sbjct: 300 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC 359
Query: 489 YMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLA 548
++ F +P+ ++ + + L+ + + +
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQ--------AMP 411
Query: 549 LLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAV 608
L ELM R A + + +D + L V +
Sbjct: 412 TLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVC 471
Query: 609 KCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYP 668
L +A + A + D L + + + LL +
Sbjct: 472 WAFSSLAEAAYEAA---------DVADDQEEPATYCLSSSFELI-VQKLLETTDRPDGHQ 521
Query: 669 SAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQI 728
+ + + + + + + + TL ++ + ++ S +
Sbjct: 522 NNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQME-------SHIQSTSDR 574
Query: 729 AKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCV 788
+ LQ ++ + + + S+++ + + TA V
Sbjct: 575 IQFNDLQSLLCATLQNVLRKVQHQDAL--QISDVVMASLLRMFQSTAGSGGVQEDALMAV 632
Query: 789 AALAITVQREALPVVEKFLKELKT--NKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVM 846
+ L + E L +E F L +QV + A+ + L +
Sbjct: 633 STLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVG----------LVGDLCRALQ 682
Query: 847 SCNLQLYTKLIDFLLEGLTTNKSTSTNRTY-IQCFAAICRQAGHRFAEHIERVMPLILKY 905
S + +++ LLE L + + + F I G F +++E V+ + +
Sbjct: 683 SNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQA 742
Query: 906 SREEDD-----------ELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQV 954
S+ + D ELRE CL+A VQ + + V +
Sbjct: 743 SQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDV--MLVQPRVEFILSF 800
Query: 955 ILNAF--TPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFL 1007
I + ++ V + A+ +G + + G L+ L
Sbjct: 801 IDHIAGDEDHTDGVVACAAGLIGDLC--------TAFGKDVLKLVEARPMIHELL 847
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (116), Expect = 4e-06
Identities = 87/646 (13%), Positives = 187/646 (28%), Gaps = 51/646 (7%)
Query: 748 SLVLAELPGLSFSELLNMLIAPVMTGTA---LHKQAFHSLAKCVAALAITVQREALPVVE 804
+ AE+P + EL+ L+A V + + + ++ + ++ +
Sbjct: 115 GIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEIL 174
Query: 805 KFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGL 864
+ + ++ ++ V + A + L+ S L + + + I ++
Sbjct: 175 TAIIQGMRKEEPSNNVKLAATNALLNS---------LEFTKANFDKESERHFIMQVVCEA 225
Query: 865 TTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAF 924
T T +Q I ++ + I + + D + E LQ E +
Sbjct: 226 TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDID--EVALQGIEFW 283
Query: 925 VQRCPKEITPHIQSIGRHTDLTSVADLKQVI---------------LNAFTPTSEEVKSA 969
C +E+ I++ + L ++
Sbjct: 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWN 343
Query: 970 ASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTL 1029
G +++ L I + + + ++
Sbjct: 344 PCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK 403
Query: 1030 IDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSP 1089
+P L E +K S ++R T + N + L +
Sbjct: 404 PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE 463
Query: 1090 VIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQ 1149
V N + + V P++Y + I Q L D Q
Sbjct: 464 --PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQ 521
Query: 1150 -EVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIAASPLRI 1208
++ A + +I+ N + ++++RL+ ++ + I ++ RI
Sbjct: 522 NNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQ------VLQMESHIQSTSDRI 575
Query: 1209 DLRPILTDGIPILGSFLRKNQRALKLSTL-----LLLDTLLVNYPSAISTEMLNKVTVEL 1263
+ + L + LRK Q L LL S E L
Sbjct: 576 QFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTL 635
Query: 1264 APLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTD---LTSVADLKQV 1320
++ L + L K V AA ++ + R + ++ Q+
Sbjct: 636 VEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQL 695
Query: 1321 ILNAFTPTS--EEVKSAASYTLGSIAV---GNLQQYVPFVLKEIEN 1361
+L + VK G IA+ G ++Y+ VL ++
Sbjct: 696 LLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQ 741
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.1 bits (123), Expect = 6e-07
Identities = 82/789 (10%), Positives = 204/789 (25%), Gaps = 55/789 (6%)
Query: 693 HIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFKSLVLA 752
+ A+ + A I L S + + + ++
Sbjct: 68 ELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSI--EPRIANAAAQLIAAIADI 125
Query: 753 ELPGLSFSELLNMLIAPVMTGTALHKQ--AFHSLAKCVAALAITVQREALPVVEKFLKEL 810
ELP ++ EL+ +++ + + + +L + + + L +
Sbjct: 126 ELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESAD-PQSQALVSSSNNILIAI 184
Query: 811 KTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKST 870
V L+ L + + I N + T +
Sbjct: 185 VQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCE------ATQAEDI 238
Query: 871 STNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPK 930
C I + ++E+ + + + + ++ + E + C +
Sbjct: 239 EVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPND--KVASMTVEFWSTICEE 296
Query: 931 EITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSG 990
EI + + + P + + + +S + +
Sbjct: 297 EIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQ 356
Query: 991 VAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLI----DPSNLLPRLQESLKSN 1046
+ + L + + I D + ++L S
Sbjct: 357 LFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI 416
Query: 1047 SALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEAL 1106
LM V ++ L V+ + A
Sbjct: 417 LNLMNDQS-----LQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVAT 471
Query: 1107 LVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNL 1166
+ ++ L + F + + D + + A S + ++
Sbjct: 472 NCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYA 531
Query: 1167 GDYLKSELPVCLPILLDRLRNEITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLR 1226
D + ++D+L T+ L+ + ++ + +L + +R
Sbjct: 532 TDTVAETSASISTFVMDKLGQ------TMSVDENQLTLEDAQSLQELQSNILTVLAAVIR 585
Query: 1227 KNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIA 1286
K+ +++ +L+ S + + V ++ L + + T +
Sbjct: 586 KSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLL 645
Query: 1287 KI--QPNALVEPAAASILPQIGRHTD---LTSVADLKQVILNAFTP--TSEEVKSAASYT 1339
K Q ++ V A + I + + V+ + E+K A
Sbjct: 646 KALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSV 705
Query: 1340 LGSIAV---GNLQQYVPFVLK--------EIENQPKRQYLLLHSLKEIISWQSTST---- 1384
G IA + Y+ ++ + EN + E +
Sbjct: 706 FGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGL 765
Query: 1385 -SGVAQLQQFVPAIWAQLFLHCE----CQEEGTRNVVAECLGKLTLIDPSNLLPRLQESL 1439
L +V I+ + E E+ T +G + + P + +
Sbjct: 766 HDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQD 825
Query: 1440 KSNSALMRT 1448
+ RT
Sbjct: 826 WVIDYIKRT 834
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.1 bits (123), Expect = 6e-07
Identities = 87/713 (12%), Positives = 183/713 (25%), Gaps = 96/713 (13%)
Query: 537 EKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLL 596
+ R L+ + S D ++ ++ +++ ++ L L
Sbjct: 52 NTKLEGRILAALTLKNELVSKDSVKTQQFAQRWIT-------QVSPEAKNQIKTNALTAL 104
Query: 597 EDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLST 656
+ N A + + + A P + + I+ Q
Sbjct: 105 VSIEPRIANAAAQLIAAIADIELPHGAWP----------ELMKIMVDNTGAEQPENVKRA 154
Query: 657 LLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEP 716
LL L + P + + ++ + + V
Sbjct: 155 SLLA---------------LGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRL 199
Query: 717 AAASILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGL---------SFSELLNMLI 767
AA + L L K+ + + +++ AE + +
Sbjct: 200 AALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFM 259
Query: 768 APVMTGT--ALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVAL 825
P M AL S VA++ + EL Q AL
Sbjct: 260 KPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFAL 319
Query: 826 SHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICR 885
S + L ++ + + + L+ N ++
Sbjct: 320 SSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNIT 379
Query: 886 QAGHR--------------------FAEHIERVMPLILKYSREEDDELREFCLQACEAFV 925
R ++ + +P IL ++ +++E
Sbjct: 380 ADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIA 439
Query: 926 QRCPKEITPHIQSIGRHTDL-TSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQ 984
+ I P G + D +V N V+ A T I
Sbjct: 440 DSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPAL 499
Query: 985 STSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLK 1044
G A A F E + VAE ++ L +
Sbjct: 500 VDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDEN 559
Query: 1045 SNSALMRTTHQSNQT--------------------FNVIIQRNDIHNHNEETSFIYSFYY 1084
+ + Q Q+ ++++ ++++FI +
Sbjct: 560 QLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVF 619
Query: 1085 FLLSPVIASVGDNFYK------------ITAEALLVLQQFVKVIRPLTSPSSYDFAPFTS 1132
+ +S + AS+G F K + V V I +++ DF ++
Sbjct: 620 YAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSD 679
Query: 1133 DIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRL 1185
+ + + +E+K +S G I N+G L + + +
Sbjct: 680 AMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQ 732
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.2 bits (118), Expect = 2e-06
Identities = 78/762 (10%), Positives = 194/762 (25%), Gaps = 78/762 (10%)
Query: 69 FGALLPSFHFVILTALLPQLSSPRQAVRKRTIVALSHLV-MSCNLQLYTKLIDFLLEGLT 127
+ P I T L L S + ++ + + + +L+ +++
Sbjct: 85 ITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTG 144
Query: 128 TNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILK-----YSREEDDELREFCLQA 182
+ + R + +C A + + +++ S E +R L A
Sbjct: 145 AEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNA 204
Query: 183 CEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGG--EGGGEGMDTEEEDG 240
+ + + ++ E + M
Sbjct: 205 LADSL-----IFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFM 259
Query: 241 EDEGEDDNEY---SDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKER 297
+ E + + KV + I D+ ++ + PL +
Sbjct: 260 KPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFAL 319
Query: 298 EENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLRE 357
D+ + LL + + L + L L+ +
Sbjct: 320 SSI--KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQN 377
Query: 358 KSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDV----------TSVAEWDEEEGLGGE 407
+ ++ A + + G + S+ + G
Sbjct: 378 ITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGR 437
Query: 408 GGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVS 467
++ + G D + + + +Y
Sbjct: 438 IADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYP 497
Query: 468 PPLIARFK-----EREENVKSDIFHAYMALLKG-----------------TRTFSPLTPS 505
+ + E N ++ F A +++ + ++
Sbjct: 498 ALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVD 557
Query: 506 DPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMA 565
+ ++ + L + + +++ A+ + + L L+ D F
Sbjct: 558 ENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDD 617
Query: 566 TNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASP 625
+S L K + LL+ L + V AV + + +L +
Sbjct: 618 VFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE----- 672
Query: 626 LRIDLRPILTDGIPILGSFLRKNQ--RALKLSTLLLLDTLLVNYPSA-------ISTEML 676
D R + +L + R LK + L + + N + I +
Sbjct: 673 ---DFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCV 729
Query: 677 NKVTVELAPLVSESDLHIAQLTLTLLTSIAKI-----QPNALVEPAAASILPQVLQIAKS 731
+ E+ + ++ +L + I + P +I + Q+A+
Sbjct: 730 AAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAED 789
Query: 732 PLLQG------AALTSMLEFFKSLVLAELPGLSFSELLNMLI 767
P L AA+ + + + + + I
Sbjct: 790 PQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYI 831
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (111), Expect = 2e-05
Identities = 61/590 (10%), Positives = 153/590 (25%), Gaps = 75/590 (12%)
Query: 42 LSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSPRQAVRKRTIV 101
L+ I +++V L + L + G P + +L L + VR + +
Sbjct: 54 LTDTIYDEDEV--LLALAEQLGTFTTLVGG--PEYVHCLLPPLESLATVEETVVRDKAVE 109
Query: 102 ALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVM 161
+L + + L++ L ++ + F+ + +
Sbjct: 110 SLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVC---YPRVSSAVKAELR 166
Query: 162 PLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEE 221
++ +R F + + +++S + + D +
Sbjct: 167 QYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLA 223
Query: 222 EGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGD 281
++ + +D SW+VR A + I
Sbjct: 224 VEACVNI----AQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK 279
Query: 282 MYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLS 341
+ P K+ E V++ H + C +
Sbjct: 280 TDLV--PAFQNLMKDCEAEVRAAASHKVKEFCENLS------------------ADCREN 319
Query: 342 TQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEWDEE 401
+ ++ ++ + + + + +++ L L + E E
Sbjct: 320 VIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEV 379
Query: 402 EGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGD 461
+ + +D W+VR A + + + L +
Sbjct: 380 RLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ---LGVE 436
Query: 462 MYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLS 521
+ L ++V + A L K F
Sbjct: 437 FFDEKLNSL--CMAWLVDHVYAIREAATSNLKKLVEKFGK-------------------E 475
Query: 522 TQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKL- 580
+++ + + + R L + L +D + + D +
Sbjct: 476 WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV 535
Query: 581 ----------------DDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPL 614
+ + +V +L +L +D++ +V+ A + L L
Sbjct: 536 RFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1827 | |||
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 100.0 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 100.0 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.98 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.97 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.96 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.96 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.95 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.95 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.91 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.65 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.54 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.5 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.48 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 99.39 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 99.33 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.11 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.1 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.06 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 98.99 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.84 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.77 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.68 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.65 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.52 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.23 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 98.02 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 98.01 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 97.75 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.65 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 97.47 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.46 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 96.6 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 95.15 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 95.04 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 90.91 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 86.29 | |
| d1w9ca_ | 321 | Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax | 81.33 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-107 Score=1160.73 Aligned_cols=1007 Identities=60% Similarity=0.961 Sum_probs=854.5
Q ss_pred CCCchHHHHHHHHHHHHHHHhhCCCCCh--hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhH
Q psy14676 1 MVSDKEQLRDISSIGLKTVISELPLGSN--ALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHF 78 (1827)
Q Consensus 1 ~~~~~~~~Rdi~~~~Lktvi~~lp~~~~--~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~ 78 (1827)
|.++++++|+++++|||+++.++|.... .....+++.++++|...+.+.+++.++.+++++|++++.++|+.+.+++.
T Consensus 92 l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~ 171 (1207)
T d1u6gc_ 92 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHP 171 (1207)
T ss_dssp TTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHH
T ss_pred hcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHH
Confidence 4578899999999999999999997653 55668899999999999988889999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHH
Q psy14676 79 VILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIE 158 (1827)
Q Consensus 79 ~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~ 158 (1827)
.+++.+++.|+++++.||++|+.|++.++.++++..+..++..++..+.++.+..+|+.++++++.+++..|.+|.+|++
T Consensus 172 ~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~ 251 (1207)
T d1u6gc_ 172 SILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLE 251 (1207)
T ss_dssp HHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHH
Confidence 99999999999999999999999999999999998888888999988866556677899999999999999999999999
Q ss_pred HHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCccc
Q psy14676 159 RVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEE 238 (1827)
Q Consensus 159 ~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~ 238 (1827)
.++|.+++.++++++++|+.|+++++.|+..||+++.||++.+++.++++++||||+..+++++... .++.+.
T Consensus 252 ~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~------~~~~~~- 324 (1207)
T d1u6gc_ 252 KIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDEN------AMDADG- 324 (1207)
T ss_dssp THHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------------------------
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHh------hhhhhc-
Confidence 9999999999999999999999999999999999999999999999999999999996544332110 011100
Q ss_pred CCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcc
Q psy14676 239 DGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRT 318 (1827)
Q Consensus 239 d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~ 318 (1827)
+.+++...++.|++++|.+|++|++|+++|++++.++|+.+.++++.++|.+++++++++|+||.+++.+++.+++.+..
T Consensus 325 ~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~ 404 (1207)
T d1u6gc_ 325 GDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRP 404 (1207)
T ss_dssp -----------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCC
T ss_pred cchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccc
Confidence 11122233456778899999999999999999999999999999999999999999999999999999999999988764
Q ss_pred cCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhh
Q psy14676 319 FSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEW 398 (1827)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~ 398 (1827)
...+. ..+.......++...+...+|.+++.+.+.++++++.+|++++.++..+..+.|+.+.+|++.+++.+...+.+
T Consensus 405 ~~~~~-~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~~l~~ 483 (1207)
T d1u6gc_ 405 VQSWL-CDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLND 483 (1207)
T ss_dssp C-------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTC
T ss_pred hhhhh-hchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHHHHhc
Confidence 33221 11122233466778899999999999999999999999999999999999888887777766666665555411
Q ss_pred hhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchh
Q psy14676 399 DEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKERE 478 (1827)
Q Consensus 399 ~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~ 478 (1827)
. .
T Consensus 484 ~-----------------------------------~------------------------------------------- 485 (1207)
T d1u6gc_ 484 K-----------------------------------S------------------------------------------- 485 (1207)
T ss_dssp S-----------------------------------S-------------------------------------------
T ss_pred c-----------------------------------c-------------------------------------------
Confidence 0 0
Q ss_pred hhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCC
Q psy14676 479 ENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSD 558 (1827)
Q Consensus 479 ~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~d 558 (1827)
.
T Consensus 486 -----------------------~-------------------------------------------------------- 486 (1207)
T d1u6gc_ 486 -----------------------S-------------------------------------------------------- 486 (1207)
T ss_dssp -----------------------S--------------------------------------------------------
T ss_pred -----------------------c--------------------------------------------------------
Confidence 0
Q ss_pred ccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchh
Q psy14676 559 KDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGI 638 (1827)
Q Consensus 559 pd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i 638 (1827)
...+
T Consensus 487 -----------------------------------------~~~~----------------------------------- 490 (1207)
T d1u6gc_ 487 -----------------------------------------SSNL----------------------------------- 490 (1207)
T ss_dssp -----------------------------------------CHHH-----------------------------------
T ss_pred -----------------------------------------hhHH-----------------------------------
Confidence 0000
Q ss_pred hhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhh
Q psy14676 639 PILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAA 718 (1827)
Q Consensus 639 ~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~ 718 (1827)
|..++
T Consensus 491 --------------~~~al------------------------------------------------------------- 495 (1207)
T d1u6gc_ 491 --------------KIDAL------------------------------------------------------------- 495 (1207)
T ss_dssp --------------HHHHH-------------------------------------------------------------
T ss_pred --------------HHHHH-------------------------------------------------------------
Confidence 00000
Q ss_pred hhhhHHHhhhhcccccchhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhh
Q psy14676 719 ASILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQRE 798 (1827)
Q Consensus 719 ~~llp~ll~l~~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~ 798 (1827)
.+++.+.
T Consensus 496 -------------------------~~l~~l~------------------------------------------------ 502 (1207)
T d1u6gc_ 496 -------------------------SCLYVIL------------------------------------------------ 502 (1207)
T ss_dssp -------------------------HHHHHHH------------------------------------------------
T ss_pred -------------------------HHHHHHH------------------------------------------------
Confidence 0000000
Q ss_pred hhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcCCCChhhHHHHHH
Q psy14676 799 ALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQ 878 (1827)
Q Consensus 799 ~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~~l~ 878 (1827)
T Consensus 503 -------------------------------------------------------------------------------- 502 (1207)
T d1u6gc_ 503 -------------------------------------------------------------------------------- 502 (1207)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhh
Q psy14676 879 CFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNA 958 (1827)
Q Consensus 879 ~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~ 958 (1827)
T Consensus 503 -------------------------------------------------------------------------------- 502 (1207)
T d1u6gc_ 503 -------------------------------------------------------------------------------- 502 (1207)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHH
Q psy14676 959 FTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPR 1038 (1827)
Q Consensus 959 ~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~ 1038 (1827)
T Consensus 503 -------------------------------------------------------------------------------- 502 (1207)
T d1u6gc_ 503 -------------------------------------------------------------------------------- 502 (1207)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhcc
Q psy14676 1039 LQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRP 1118 (1827)
Q Consensus 1039 L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~ 1118 (1827)
..+.+..+.+| +..+.+.+..++.|++++++.+|+.+++.+++++.+
T Consensus 503 -----------------------~~~~~~~~~~~----------~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~ 549 (1207)
T d1u6gc_ 503 -----------------------CNHSPQVFHPH----------VQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRP 549 (1207)
T ss_dssp -----------------------HSSCGGGGHHH----------HTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCC
T ss_pred -----------------------HhccHHHHHHH----------HHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhh
Confidence 00000111122 556778888899999999999999999999999988
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHHHHH
Q psy14676 1119 LTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEITRLTTVKAL 1198 (1827)
Q Consensus 1119 ~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~tR~~av~al 1198 (1827)
.......++.+++.++++.++.++.+++.+.++|+.|+.+++.++..+|+.+.++++.+++.+.++++++.+|..+++++
T Consensus 550 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~r~~a~~~l 629 (1207)
T d1u6gc_ 550 LDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKAL 629 (1207)
T ss_dssp SSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHH
T ss_pred hccchhhhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 65555567889999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHH
Q psy14676 1199 TKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLT 1278 (1827)
Q Consensus 1199 ~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~a 1278 (1827)
+.++.+....++.+++...++.+..+++++++.+|.+++.+|..++.+++..+.+..+..+++.+.++++++|.+++..+
T Consensus 630 ~~i~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~ 709 (1207)
T d1u6gc_ 630 TLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMA 709 (1207)
T ss_dssp HHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHH
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccchhHHHhhHHHhhccccccccHHHHHHH
Confidence 99998887888899999999999999999999999999999999999999888888889999999999999999999999
Q ss_pred HHHHHHHHHhCCCccch------hh-------------------------------------------------------
Q psy14676 1279 LTLLTSIAKIQPNALVE------PA------------------------------------------------------- 1297 (1827)
Q Consensus 1279 l~~L~~l~~~~~~~~~~------~~------------------------------------------------------- 1297 (1827)
+.+++.+++..|..... +.
T Consensus 710 l~~l~~l~~~~~~~~~~~~~~il~~l~~~~~s~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 789 (1207)
T d1u6gc_ 710 ISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTH 789 (1207)
T ss_dssp HHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CC
T ss_pred HHHHHHHHhhcchhhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccchhhH
Confidence 99999998876543211 00
Q ss_pred ---------------------------------------------HHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhH
Q psy14676 1298 ---------------------------------------------AASILPQIGRHTDLTSVADLKQVILNAFTPTSEEV 1332 (1827)
Q Consensus 1298 ---------------------------------------------i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eV 1332 (1827)
....+|++|++.+....+.+.+.+++.|.+++++|
T Consensus 790 ~~~~~~~~~~i~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~al~~Lge~~~~~~~~~~~~l~~~l~~~l~~~~~~v 869 (1207)
T d1u6gc_ 790 KQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEV 869 (1207)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCSCTHHHHHHHHGGGCSCHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhCCCCHHH
Confidence 00113677777776666789999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHhhhcCchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhH
Q psy14676 1333 KSAASYTLGSIAVGNLQQYVPFVLKEIENQPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGT 1412 (1827)
Q Consensus 1333 r~aAa~aLG~i~~~~l~~~LP~Il~~i~~~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~v 1412 (1827)
|.+|+.+||.++.++++.|+|.|++.++.+++.+|.++++++|++.+. +...+.+|.+.||+.|+.++++.++++
T Consensus 870 r~aAa~aLg~l~~~~~~~~lp~il~~l~~~~~~~~~ll~al~ei~~~~-----~~~~~~~~~~~i~~~L~~~~~~~~~~v 944 (1207)
T d1u6gc_ 870 KSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSA-----SVVGLKPYVENIWALLLKHCECAEEGT 944 (1207)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHSS-----CSTTTHHHHHHHHHHHTTCCCCSSTTH
T ss_pred HHHHHHHHHHHHHhhHHHHhHHHHHHHhcCchHHHHHHHHHHHHHHhc-----chhhhHHHHHHHHHHHHHHhCCCcHHH
Confidence 999999999999999999999999999888889999999999999843 256788999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhH
Q psy14676 1413 RNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDS 1492 (1827)
Q Consensus 1413 R~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~ 1492 (1827)
|+++|+|||+|+..+|..++|.|.+.+.++++.+|.+++.++++++.+.+..+++.++
T Consensus 945 r~~~a~~lg~L~~~~~~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~---------------------- 1002 (1207)
T d1u6gc_ 945 RNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK---------------------- 1002 (1207)
T ss_dssp HHHHHHHHHHHHHSSGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHH----------------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHH----------------------
Confidence 9999999999999999999999999999999999999999999999988777666654
Q ss_pred HHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhhhhccC
Q psy14676 1493 ERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRNS 1572 (1827)
Q Consensus 1493 ~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~~~ 1572 (1827)
.+++.|+.+++|+++ +|||.|+.+|++++||+
T Consensus 1003 --~li~~ll~~l~d~~~----------------------------------------------~vR~~al~~l~~~~~~~ 1034 (1207)
T d1u6gc_ 1003 --NCIGDFLKTLEDPDL----------------------------------------------NVRRVALVTFNSAAHNK 1034 (1207)
T ss_dssp --HHSTTTHHHHSSSST----------------------------------------------HHHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHhCCCCH----------------------------------------------HHHHHHHHHHHHHHHhC
Confidence 567888999999988 99999999999999999
Q ss_pred CCCcccchhhhhhhhcccCCcccccccccccCCcchhccccceeeeccCcccccccCchhhhhHHHHHHHHHhhhhccCC
Q psy14676 1573 SSNMKIDTLAFTHTLLTTHPPAVFHPHIHILLPPVIIIKTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTCLDRVD 1652 (1827)
Q Consensus 1573 p~li~~~~~~~~~~~l~~llp~l~~~~~~~~~~~t~~~~~lir~v~mgpfkh~vddgl~~Rk~a~e~~~~ll~~~~~~~~ 1652 (1827)
|+++ +|||+.++|.|| ++|.+|+||||+|+||||||+||||+|+||+||||||||||+|++++|
T Consensus 1035 p~li--------~~~l~~llp~l~--------~~t~~~~e~ir~v~~gp~kh~~d~gl~~rk~a~e~~~~~l~~~~~~~~ 1098 (1207)
T d1u6gc_ 1035 PSLI--------RDLLDTVLPHLY--------NETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLD 1098 (1207)
T ss_dssp GGGT--------GGGHHHHHHHHH--------HTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSC
T ss_pred hHHH--------HHHHHHHHHHHH--------HHhccchhheeeeecCCceeecCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence 9999 999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhccchhhHHHHHHHHHHHHHhhChHHHHHHHHHhhHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHH
Q psy14676 1653 MFEFLNHLESGLRDHYDIKMLTYLMLARLAQMTPAALLQRLERIVEPLRNTVTLKVKANSVKQEYEKQDELKRSAMRAVA 1732 (1827)
Q Consensus 1653 ~~~~~~~~~~gl~d~~dik~l~~~~l~~l~~~~p~~~~~~l~~l~~~~~~~l~~~~k~~~~kqe~e~~~e~~~s~~r~~~ 1732 (1827)
+.+|+++++.||+||||||++|++||.||+.+||.++.++||+|++||+++|++|+|+||||||+||++|++||+||+++
T Consensus 1099 ~~~~~~~~~~gl~d~~di~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~e~~~e~~~~~~~~~~ 1178 (1207)
T d1u6gc_ 1099 IFEFLNHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVA 1178 (1207)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcccCcchhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCChhHHHHHHHHhCCchHH
Q psy14676 1733 ALLTIQDADKNPALNDFVATIKNSPELQ 1760 (1827)
Q Consensus 1733 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1760 (1827)
+|.++|++++||+|.+|+.+|+++|+|+
T Consensus 1179 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1206 (1207)
T d1u6gc_ 1179 ALLTIPEAEKSPLMSEFQSQISSNPELA 1206 (1207)
T ss_dssp HTTSSCSCSSSSSCCCCCHHHHHHHHHT
T ss_pred HHHcCCCcccChHHHHHHHHHHhChhcc
Confidence 9999999999999999999999999985
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-41 Score=481.21 Aligned_cols=1029 Identities=24% Similarity=0.308 Sum_probs=669.0
Q ss_pred HHHHHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCc
Q psy14676 546 CLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASP 625 (1827)
Q Consensus 546 ~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~ 625 (1827)
.++.++++++|+|||+||||++||.+.+.+..++.|.....++++.++++++|++++||+.|++|+|++++.+++
T Consensus 4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~----- 78 (1207)
T d1u6gc_ 4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE----- 78 (1207)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-----
T ss_pred hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcH-----
Confidence 467788999999999999999999999998889999999999999999999999999999999999999987765
Q ss_pred ccccccccccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhh
Q psy14676 626 LRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSI 705 (1827)
Q Consensus 626 ~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i 705 (1827)
+.++.+++.|...+.+++...|..+..++.+++...+.....
T Consensus 79 ------~~~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~-------------------------------- 120 (1207)
T d1u6gc_ 79 ------YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG-------------------------------- 120 (1207)
T ss_dssp ------HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-------------------------------------
T ss_pred ------hhHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhccccccc--------------------------------
Confidence 234556677777666666666666666655554333211000
Q ss_pred hccCCCccchhhhhhhhHHHhhhhcccc---cchhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHH
Q psy14676 706 AKIQPNALVEPAAASILPQVLQIAKSPL---LQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFH 782 (1827)
Q Consensus 706 ~~~~~~~~~~~~~~~llp~ll~l~~s~~---~~~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~ 782 (1827)
.......++.+++.+........ .+..+++.+..
T Consensus 121 -----~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~-------------------------------------- 157 (1207)
T d1u6gc_ 121 -----SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD-------------------------------------- 157 (1207)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH--------------------------------------
T ss_pred -----chhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH--------------------------------------
Confidence 00011133445555544322111 11122222212
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHh
Q psy14676 783 SLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLE 862 (1827)
Q Consensus 783 ~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~ 862 (1827)
++.++|..... .....++.++..+.+ ++. .+|++|+.||+.++.+++++.+..++..++.
T Consensus 158 -l~~~~g~~l~~---~~~~il~~l~~~l~~--~~~--------------~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~ 217 (1207)
T d1u6gc_ 158 -MLSRQGGLLVN---FHPSILTCLLPQLTS--PRL--------------AVRKRTIIALGHLVMSCGNIVFVDLIEHLLS 217 (1207)
T ss_dssp -HHHHTCSSCTT---THHHHHHHHGGGGGC--SSH--------------HHHHHHHHHHHHHTTTC----CTTHHHHHHH
T ss_pred -HHHHhhHhhHH---HHHHHHHHHHHHhCC--CCH--------------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 11222211100 001122234444443 111 2899999999999999999999999999999
Q ss_pred hhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCcccccccccccc
Q psy14676 863 GLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSIGRH 942 (1827)
Q Consensus 863 ~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~ 942 (1827)
.+..+.+..+|++++++++.+++..|..|.+|+++++|.+++.+.++++++|+.++++++.|+..|+.++.||+++++..
T Consensus 218 ~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~ 297 (1207)
T d1u6gc_ 218 ELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINI 297 (1207)
T ss_dssp HHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHH
T ss_pred HHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHH
Confidence 88777777889999999999999999999999999999999999999999999999999999999999999999877652
Q ss_pred C----Ccch----hhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhccccc----------chhhhhhhhHHHHHHH
Q psy14676 943 T----DLTS----VADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTST----------SGVAQLQQFVPAIWAQ 1004 (1827)
Q Consensus 943 ~----~~s~----~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~----------~~~~~l~~~~p~ll~~ 1004 (1827)
. .+.+ ....... ........+.............++.+|+.+.. ..++.+.++++.+++.
T Consensus 298 ~l~~l~~dp~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~ 375 (1207)
T d1u6gc_ 298 CLKYLTYDPNYNYDDEDEDE--NAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPA 375 (1207)
T ss_dssp HTTCCCCC--------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHH
T ss_pred HHHHHhcCcchhhhhHHHHH--hhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 1 0000 0000000 00000000000000000011123446763321 1234455566677778
Q ss_pred HHhhhhccccchhhHHHHHHhhhcccC--------------------------CCCchHHHHHHhccCChhhHHHHHHHH
Q psy14676 1005 LFLHCECQEEGTRNVVAECLGKLTLID--------------------------PSNLLPRLQESLKSNSALMRTTHQSNQ 1058 (1827)
Q Consensus 1005 L~~~l~~~e~~vR~~a~e~Lg~L~~~~--------------------------~~~llP~L~~~L~s~~~~~R~~a~~~L 1058 (1827)
++..+.+.++.||..+..+++.+.... .+.+++.+.+.+++.+...|..++..+
T Consensus 376 L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l 455 (1207)
T d1u6gc_ 376 LISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNML 455 (1207)
T ss_dssp HHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 888889999999998888887765321 122455556666788899999999999
Q ss_pred HHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCch--hhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHH
Q psy14676 1059 TFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFY--KITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQ 1136 (1827)
Q Consensus 1059 ~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~--~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~ 1136 (1827)
..+....+..+.+| +..+++.+...+.|... .++.+++..+..+.+.. ....+.+|+..+.+
T Consensus 456 ~~l~~~~~~~l~~~----------l~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~------~~~~~~~~~~~l~~ 519 (1207)
T d1u6gc_ 456 TELVNVLPGALTQH----------IPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNH------SPQVFHPHVQALVP 519 (1207)
T ss_dssp HHHHHHSTTTTGGG----------HHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSS------CGGGGHHHHTTTHH
T ss_pred HHHHHHcchHHHHh----------hHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhc------cHHHHHHHHHhhhh
Confidence 98888888888888 99999999999988664 56778888888877642 23567789999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhh-------hhhhhhhhhHHHHHHhhhhhh----hHHHHHHHHHHHhcCC
Q psy14676 1137 CTLVRLKAADIDQEVKERAISCMGQIICNLGD-------YLKSELPVCLPILLDRLRNEI----TRLTTVKALTKIAASP 1205 (1827)
Q Consensus 1137 ~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~-------~l~~~l~~lL~~Ll~~L~~e~----tR~~av~al~~ia~~~ 1205 (1827)
.+...+. |....++..|+.+++.++..++. ...+++..+++.++.++.+.+ .|..++.+++.+....
T Consensus 520 ~~~~~~~--~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~ 597 (1207)
T d1u6gc_ 520 PVVACVG--DPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNL 597 (1207)
T ss_dssp HHHHHHT--CSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHc--cccHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHh
Confidence 8888876 88899999999999999988753 234677888888888886443 4899999999887643
Q ss_pred CccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHH
Q psy14676 1206 LRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSI 1285 (1827)
Q Consensus 1206 ~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l 1285 (1827)
. ..+.+.+...++.+...++. ...|..++.++..++......--..++..+++.+...+.+++..++..++.+|..+
T Consensus 598 ~-~~~~~~~~~~l~~l~~~l~~--~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~r~~al~~L~~l 674 (1207)
T d1u6gc_ 598 G-DNLGSDLPNTLQIFLERLKN--EITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDIL 674 (1207)
T ss_dssp G-GGCCTHHHHHHHHHHHHTTS--SSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred h-hhhHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 2 23445667777777776653 34678889999887765443322346778888999999999999999999999999
Q ss_pred HHhCCCccchhh----------------------HHhhhhhcccccCC---CchhhHHHHHHHhcCCCC-----------
Q psy14676 1286 AKIQPNALVEPA----------------------AASILPQIGRHTDL---TSVADLKQVILNAFTPTS----------- 1329 (1827)
Q Consensus 1286 ~~~~~~~~~~~~----------------------i~~~lgeiG~~~~~---~~~~~l~~~~l~~~~~~s----------- 1329 (1827)
+...+....... ....++.+.+..+. .....+++.++..+.++.
T Consensus 675 ~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~l~~l~~l~~~~~~~~~~~~~~il~~l~~~~~s~l~~~~~~~~~~~ 754 (1207)
T d1u6gc_ 675 IKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLD 754 (1207)
T ss_dssp HHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred HHhccccchhHHHhhHHHhhccccccccHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHhcCchhhhhhHHHHHH
Confidence 998765443210 01112222111100 011223333333332210
Q ss_pred -----------------------------------HhHHHHHHHHHhhhhhhhhhhhHHHHHHh---hhc---CchhhHH
Q psy14676 1330 -----------------------------------EEVKSAASYTLGSIAVGNLQQYVPFVLKE---IEN---QPKRQYL 1368 (1827)
Q Consensus 1330 -----------------------------------~eVr~aAa~aLG~i~~~~l~~~LP~Il~~---i~~---~~~~q~~ 1368 (1827)
......++.++|.+.........+.+.+. ..+ .+..+..
T Consensus 755 ~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 834 (1207)
T d1u6gc_ 755 FFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLL 834 (1207)
T ss_dssp HHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHH
T ss_pred HHHHHHhccccccchHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 11111112222221111111111111111 111 1234556
Q ss_pred HHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHHH
Q psy14676 1369 LLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRT 1448 (1827)
Q Consensus 1369 ~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~ 1448 (1827)
.+.+|+|+...... .+.+.+.+.+++.+.++.+.+|..|+.+||+++..++..++|.+.+.+.+. +..|.
T Consensus 835 al~~Lge~~~~~~~---------~~~~~l~~~l~~~l~~~~~~vr~aAa~aLg~l~~~~~~~~lp~il~~l~~~-~~~~~ 904 (1207)
T d1u6gc_ 835 ALLSLGEVGHHIDL---------SGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQ-PKRQY 904 (1207)
T ss_dssp HHHHHHHHHHHSCC---------CSCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSC-GGGHH
T ss_pred HHHHHHHHHHhccc---------cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHhcC-chHHH
Confidence 67788887653211 233456677788888888999999999999999999999999999998764 45677
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhh
Q psy14676 1449 TVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKE 1528 (1827)
Q Consensus 1449 t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~ 1528 (1827)
..+++++.++...+... +. .+...+|+.++..+.+++..+|..+++|+|+|+...+.
T Consensus 905 ~ll~al~ei~~~~~~~~---~~--------------------~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~~ 961 (1207)
T d1u6gc_ 905 LLLHSLKEIISSASVVG---LK--------------------PYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPE 961 (1207)
T ss_dssp HHHHHHHHHHHSSCSTT---TH--------------------HHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGG
T ss_pred HHHHHHHHHHHhcchhh---hH--------------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCHH
Confidence 88999999987543221 11 13457889999999999999999999999999865444
Q ss_pred hhHHHHHHHHHhhhcccccccccCCccchhHHHHHHHhhhhccCCCCcccchhhhhhhhcccCCcccccccccccCCcch
Q psy14676 1529 FQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVYCLGDRNSSSNMKIDTLAFTHTLLTTHPPAVFHPHIHILLPPVI 1608 (1827)
Q Consensus 1529 ~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l~s~a~~~p~li~~~~~~~~~~~l~~llp~l~~~~~~~~~~~t~ 1608 (1827)
.. +..+...+.+ +++.+|..++.++.....+.|..+ .+++..++|.++. .
T Consensus 962 ~~----lp~L~~~l~~--------~~~~~r~~ai~~l~~~~~~~~~~~--------~~~l~~li~~ll~----------~ 1011 (1207)
T d1u6gc_ 962 TL----LPRLKGYLIS--------GSSYARSSVVTAVKFTISDHPQPI--------DPLLKNCIGDFLK----------T 1011 (1207)
T ss_dssp GT----HHHHTTTSSS--------SCHHHHHHHHHHTGGGCCSSCCTH--------HHHHHHHSTTTHH----------H
T ss_pred HH----HHHHHHHhCC--------CCHHHHHHHHHHHHHHHHhcchhh--------HHHHHHHHHHHHH----------H
Confidence 33 3333333332 345999999999999888888888 7888888887761 1
Q ss_pred hccccceeeeccCcccccccCchhhhhHHHHHHHHHhhhhccC--ChHHHHHHHHh-------------------hccch
Q psy14676 1609 IIKTLIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDTCLDRV--DMFEFLNHLES-------------------GLRDH 1667 (1827)
Q Consensus 1609 ~~~~lir~v~mgpfkh~vddgl~~Rk~a~e~~~~ll~~~~~~~--~~~~~~~~~~~-------------------gl~d~ 1667 (1827)
. -|.-+++|++|..|+.++..+-..-+ .+..+++.+.+ ..+|-
T Consensus 1012 l----------------~d~~~~vR~~al~~l~~~~~~~p~li~~~l~~llp~l~~~t~~~~e~ir~v~~gp~kh~~d~g 1075 (1207)
T d1u6gc_ 1012 L----------------EDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDG 1075 (1207)
T ss_dssp H----------------SSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETH
T ss_pred h----------------CCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhccchhheeeeecCCceeecCCc
Confidence 1 15578999999999999998743321 14566666654 12345
Q ss_pred hhHHHHHHHHHHHHHhhChHHH--HHHHHHhhHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcccCCCCChh
Q psy14676 1668 YDIKMLTYLMLARLAQMTPAAL--LQRLERIVEPLRNTVTLKVKANSVKQEYEKQDELKRSAMRAVAALLTIQDADKNPA 1745 (1827)
Q Consensus 1668 ~dik~l~~~~l~~l~~~~p~~~--~~~l~~l~~~~~~~l~~~~k~~~~kqe~e~~~e~~~s~~r~~~~l~~~~~~~~~~~ 1745 (1827)
-|+|..+|-++..|...|++.+ ..-++.++. -| ++. ++.+=-+.-.+..|..+.+..-.+.
T Consensus 1076 l~~rk~a~e~~~~~l~~~~~~~~~~~~~~~~~~----gl----~d~---------~di~~~~~~~l~~l~~~~~~~~~~~ 1138 (1207)
T d1u6gc_ 1076 LDIRKAAFECMYTLLDSCLDRLDIFEFLNHVED----GL----KDH---------YDIKMLTFLMLVRLSTLCPSAVLQR 1138 (1207)
T ss_dssp HHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHH----TT----SSC---------HHHHHHHHHHHHHHHHSCCHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHh----cc----cch---------HHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 5899999999999886665443 222333322 22 332 2455556666666666655444444
Q ss_pred HHHHHHHHh----CCch---HH-------HHHHHHhcccCCCCCCCCccccCCCCcchhhhhhhhcCCchhh
Q psy14676 1746 LNDFVATIK----NSPE---LQ-------TIFDSMQKDSSLSNQQDPHMMDMNKNPALNDFVATIKNSPELQ 1803 (1827)
Q Consensus 1746 ~~~~~~~~~----~~~~---~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1803 (1827)
+..|++..+ .++. .+ ++-.++.+-...-. ..-+.++||.+.+|+..|+.+|||-
T Consensus 1139 l~~~~~~~~~~~~~~~~~~~~~q~~e~~~e~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~ 1206 (1207)
T d1u6gc_ 1139 LDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALL----TIPEAEKSPLMSEFQSQISSNPELA 1206 (1207)
T ss_dssp TTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTT----SSCSCSSSSSCCCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccCcchhhhhhHHHHHHHHHHHHHHHHHH----cCCCcccChHHHHHHHHHHhChhcc
Confidence 444444333 1211 11 11111111111101 1346688999999999999999974
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=2e-32 Score=375.15 Aligned_cols=725 Identities=13% Similarity=0.172 Sum_probs=483.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCC-----CchhHHH
Q psy14676 6 EQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALL-----PSFHFVI 80 (1827)
Q Consensus 6 ~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l-----~~~~~~i 80 (1827)
..+|..++.++.+++...+... .++++|.|++.++++ ++.+++.|+.+|+.++++.+..+ ......+
T Consensus 102 ~~vr~~~~~~i~~i~~~~~~~~-------Wpell~~L~~~l~s~-~~~~~~~al~~L~~i~e~~~~~~~~~~~~~~~~~l 173 (888)
T d1qbkb_ 102 PLIRATVGILITTIASKGELQN-------WPDLLPKLCSLLDSE-DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIM 173 (888)
T ss_dssp SSTTTTTTTTTHHHHTTTSSCS-------STTTSTTTTTSSTGG-GSSCSSSSSTTTHHHHGGGHHHHHTC---CCSTTT
T ss_pred HHHHHHHHHHHHHHHHHhCccc-------hHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHH
Confidence 3466666777777776655543 567889998888654 56778899999999998765332 2234568
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh---HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhH
Q psy14676 81 LTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ---LYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHI 157 (1827)
Q Consensus 81 l~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~---~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l 157 (1827)
++.+++.++++++.||..|+.+++.+....+.. .+..+++.+.... .++++.+|+.++++++.+.+..++.+.||+
T Consensus 174 l~~ll~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~~~~l~~~l 252 (888)
T d1qbkb_ 174 IPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALA-GDEEPEVRKNVCRALVMLLEVRMDRLLPHM 252 (888)
T ss_dssp THHHHTGGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTS-SCCCSSSTTHHHHTTTTTSCSCTTTTTTTT
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 899999999999999999999999988766543 3444555555443 345678999999999999999999999999
Q ss_pred HHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCC-----CccccchHHHHHHHHHHhccCCCCCc------cccc-----
Q psy14676 158 ERVMPLILKYSREEDDELREFCLQACEAFVQRCP-----KEITPHIQSITELCLTYITYDPNYNY------EDEE----- 221 (1827)
Q Consensus 158 ~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p-----~e~~p~l~~ii~~ll~~l~~dpn~~~------~ddd----- 221 (1827)
..+++++++.++++++++| ++|+++|...|. ..+.+|++.++|.++..+.|...... +++.
T Consensus 253 ~~i~~~~l~~~~~~~e~v~---~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (888)
T d1qbkb_ 253 HNIVEYMLQRTQDQDENVA---LEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDS 329 (888)
T ss_dssp TTTTTTTTTTTTSSCHHHH---HHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCC
T ss_pred HHHHHHHHHhcCCCcHHHH---HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhh
Confidence 9999999998888888876 667778877653 45678999999999888776432110 0000
Q ss_pred -ccCCCC-C--CCCCCCCcccCCCCCCC-CCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCC
Q psy14676 222 -EGLGGE-G--GGEGMDTEEEDGEDEGE-DDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKE 296 (1827)
Q Consensus 222 -~~~~~~-~--~~~~~d~~~~d~dde~e-~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e 296 (1827)
.+.... . ........++...++++ +++..+++.+..|.+|++|+.+|+.++...++ ++++.++|.+.+.+++
T Consensus 330 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~---~il~~~l~~l~~~l~s 406 (888)
T d1qbkb_ 330 EQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLKELLFH 406 (888)
T ss_dssp GGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCS---SSHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHH---HHHHHHHHHHHHhhcc
Confidence 000000 0 00000000000000000 11112233455699999999999999987775 4578889999999999
Q ss_pred CCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHh
Q psy14676 297 REENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQT 376 (1827)
Q Consensus 297 ~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~v 376 (1827)
.+|.+|.+|+.++++++ +|+.+.+.++++.+++.+++.|+|+++.||.+++..++.++..
T Consensus 407 ~~~~~reaa~~alg~i~--------------------eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 466 (888)
T d1qbkb_ 407 HEWVVKESGILVLGAIA--------------------EGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW 466 (888)
T ss_dssp SSHHHHHHHHHHHHHHT--------------------TTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHH
T ss_pred chhHHHHHHHHHhhhhh--------------------hhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 3456778889999999999999999999999888788888876
Q ss_pred Ccc-cccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHh
Q psy14676 377 LPG-CLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATR 455 (1827)
Q Consensus 377 l~~-~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~ 455 (1827)
++. ...+|+..+++.+...+. |.+++||.+|+.++..+++..
T Consensus 467 ~~~~~~~~~~~~~l~~ll~~l~-------------------------------------d~~~~V~~~a~~al~~l~~~~ 509 (888)
T d1qbkb_ 467 VVSQPPDTYLKPLMTELLKRIL-------------------------------------DSNKRVQEAACSAFATLEEEA 509 (888)
T ss_dssp HHSSCHHHHTTTHHHHHHHHHS-------------------------------------SSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhHHHHHHHhc-------------------------------------CCCHHHHHHHHHHHHHHHHHh
Confidence 654 335688899999888872 246789999999999998877
Q ss_pred hhhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHh
Q psy14676 456 RDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQL 535 (1827)
Q Consensus 456 ~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l 535 (1827)
+..+.||++.+++.+..++.+.
T Consensus 510 ~~~l~p~~~~il~~l~~~l~~~---------------------------------------------------------- 531 (888)
T d1qbkb_ 510 CTELVPYLAYILDTLVFAFSKY---------------------------------------------------------- 531 (888)
T ss_dssp TTSSGGGHHHHHHHHHHHTTTC----------------------------------------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHhhh----------------------------------------------------------
Confidence 7777777666655544443322
Q ss_pred hhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHH
Q psy14676 536 REKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLF 615 (1827)
Q Consensus 536 ~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~ 615 (1827)
..+++..+..+++.++
T Consensus 532 ----------------------------------------------------------------~~~~~~~~~~al~~l~ 547 (888)
T d1qbkb_ 532 ----------------------------------------------------------------QHKNLLILYDAIGTLA 547 (888)
T ss_dssp ----------------------------------------------------------------CHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------------hHHHHHHHHHHHHHHH
Confidence 2222333333333333
Q ss_pred HHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHH
Q psy14676 616 KALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIA 695 (1827)
Q Consensus 616 ~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~ 695 (1827)
..++.....
T Consensus 548 ~~~~~~~~~----------------------------------------------------------------------- 556 (888)
T d1qbkb_ 548 DSVGHHLNK----------------------------------------------------------------------- 556 (888)
T ss_dssp HHHGGGGCS-----------------------------------------------------------------------
T ss_pred Hhhhccccc-----------------------------------------------------------------------
Confidence 222210000
Q ss_pred HHHHHHHhhhhccCCCccchhhhhhhhHHHhhhhcccccchhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccch
Q psy14676 696 QLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTA 775 (1827)
Q Consensus 696 ~~a~~~~~~i~~~~~~~~~~~~~~~llp~ll~l~~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~ 775 (1827)
.+.++.++|.++.. |
T Consensus 557 -------------------~~~~~~l~~~l~~~-----------------~----------------------------- 571 (888)
T d1qbkb_ 557 -------------------PEYIQMLMPPLIQK-----------------W----------------------------- 571 (888)
T ss_dssp -------------------HHHHHHHHHHHHHH-----------------H-----------------------------
T ss_pred -------------------hHHHHHHHHHHHHH-----------------H-----------------------------
Confidence 00011111111100 0
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHH
Q psy14676 776 LHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTK 855 (1827)
Q Consensus 776 ~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~ 855 (1827)
..
T Consensus 572 -----------------------------------~~------------------------------------------- 573 (888)
T d1qbkb_ 572 -----------------------------------NM------------------------------------------- 573 (888)
T ss_dssp -----------------------------------TT-------------------------------------------
T ss_pred -----------------------------------Hh-------------------------------------------
Confidence 00
Q ss_pred HHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCccccc
Q psy14676 856 LIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPH 935 (1827)
Q Consensus 856 l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~ 935 (1827)
+. .+...+...+.++..++...+..+.||...+++.+++.+...-. +..... ..+..
T Consensus 574 --------~~--~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~-------~~~~~~--~~~~~---- 630 (888)
T d1qbkb_ 574 --------LK--DEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLA-------QAMLNN--AQPDQ---- 630 (888)
T ss_dssp --------SC--TTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHH-------HHHHHH--HCTTT----
T ss_pred --------cc--cchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHH-------HHHHHh--ccccc----
Confidence 00 00112334456677777888999999999998888776532100 000000 00000
Q ss_pred cccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccc
Q psy14676 936 IQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEG 1015 (1827)
Q Consensus 936 l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~ 1015 (1827)
....+.++... .-.++..+
T Consensus 631 -----------------------~~~~~~~~~~~----------------------------~l~~l~~l---------- 649 (888)
T d1qbkb_ 631 -----------------------YEAPDKDFMIV----------------------------ALDLLSGL---------- 649 (888)
T ss_dssp -----------------------SCCCCTHHHHH----------------------------HHHHHHHH----------
T ss_pred -----------------------ccchhHHHHHH----------------------------HHHHHHHH----------
Confidence 00000000000 00001111
Q ss_pred hhhHHHHHHhhhccc--CCCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHh
Q psy14676 1016 TRNVVAECLGKLTLI--DPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIAS 1093 (1827)
Q Consensus 1016 vR~~a~e~Lg~L~~~--~~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~ 1093 (1827)
++.+|.-... ....++|.+..++++.++..|+.++.+++.++.+.+..+.|| ++.++|.+.+.
T Consensus 650 -----~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~----------l~~~~~~l~~~ 714 (888)
T d1qbkb_ 650 -----AEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC----------IADFMPILGTN 714 (888)
T ss_dssp -----HHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGG----------HHHHHHHHHHT
T ss_pred -----HHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHH----------HHHHHHHHHHH
Confidence 1111110000 013578888899999999999999999999999999999999 99999999999
Q ss_pred hcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy14676 1094 VGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSE 1173 (1827)
Q Consensus 1094 l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~ 1173 (1827)
+.++++.++..|++++|+++..+. .++.||+..+++.++..+...+....|++.++.|+|.+....++.+.|+
T Consensus 715 L~~~~~~v~~~a~~~ig~ia~~~~-------~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~ 787 (888)
T d1qbkb_ 715 LNPEFISVCNNATWAIGEISIQMG-------IEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPM 787 (888)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHTG-------GGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGG
T ss_pred hCcCCHHHHHHHHHHHHHHHHHHH-------HHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhh
Confidence 999999999999999999997753 5789999999999999998777788899999999999999999999999
Q ss_pred hhhhHHHHHHhhhh---hhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHh
Q psy14676 1174 LPVCLPILLDRLRN---EITRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVN 1246 (1827)
Q Consensus 1174 l~~lL~~Ll~~L~~---e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~ 1246 (1827)
++.+++.++..+.+ ...+..|.+++..+...... .+.+.+...+..+.+... ...+++.+....|..+.+.
T Consensus 788 l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~-~~~~~l~~~~~~i~~~~~-~~~~~~~~~~~~l~~~~~~ 861 (888)
T d1qbkb_ 788 LQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS-GVIQDFIFFCDAVASWIN-PKDDLRDMFCKILHGFKNQ 861 (888)
T ss_dssp GGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGG-GTGGGHHHHHHHHTTCSS-CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHH
Confidence 99999999999864 33478889999888764221 122344444444444322 2345666666666655444
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=7.2e-31 Score=359.55 Aligned_cols=752 Identities=14% Similarity=0.151 Sum_probs=482.6
Q ss_pred hHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhhhh-hHHHHHH
Q psy14676 584 SERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLS-TLLLLDT 662 (1827)
Q Consensus 584 ~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~-~l~~l~~ 662 (1827)
...++..+|... .++|.++|..|.+.|-.+- . .-|+..||..++.. +..++...|+. ++.+.+.
T Consensus 9 ~l~ql~~~L~~~-~s~d~~~r~~A~~~L~~~~----~------~p~~~~~L~~ll~~----~~~~~~~~R~~A~i~Lkn~ 73 (888)
T d1qbkb_ 9 GLQQILQLLKES-QSPDTTIQRTVQQKLEQLN----Q------YPDFNNYLIFVLTK----LKSEDEPTRSLSGLILKNN 73 (888)
T ss_dssp THHHHHHHHTTC-CHHHHHHHHHHTTSTTTST----T------STTTTTCTTSSSTT----TSCSTTTHHHHTTGGGGGT
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHH----h------CCCHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHH
Confidence 344555555433 4567899999988775541 1 02333444333222 22233345555 5556666
Q ss_pred HHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhhhhHHHhhhhccc--ccchhhhh
Q psy14676 663 LLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSP--LLQGAALT 740 (1827)
Q Consensus 663 l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~llp~ll~l~~s~--~~~~~al~ 740 (1827)
+..+|. .+++.....++..+...+.+++..++..+..+++.++...+ ...|++++|.+++.+.++ ..+.+++.
T Consensus 74 i~~~w~-~~~~~~~~~Ik~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~----~~~Wpell~~L~~~l~s~~~~~~~~al~ 148 (888)
T d1qbkb_ 74 VKAHFQ-NFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGE----LQNWPDLLPKLCSLLDSEDYNTCEGAFG 148 (888)
T ss_dssp HHHHTT-CSTTTCCHHHHHHHTTGGGCCCSSTTTTTTTTTHHHHTTTS----SCSSTTTSTTTTTSSTGGGSSCSSSSST
T ss_pred HHHhhc-cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhC----ccchHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 655554 57888888999999999999999999999888888885321 126999999999976543 34467776
Q ss_pred hHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchhH
Q psy14676 741 SMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQV 820 (1827)
Q Consensus 741 ~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~ 820 (1827)
+|..+ |+ +..+.++.-.. .......++++++.+.+...
T Consensus 149 ~L~~i----~e------~~~~~~~~~~~---------------------------~~~~~~ll~~ll~~~~~~~~----- 186 (888)
T d1qbkb_ 149 ALQKI----CE------DSAEILDSDVL---------------------------DRPLNIMIPKFLQFFKHSSP----- 186 (888)
T ss_dssp TTHHH----HG------GGHHHHHTC------------------------------CCSTTTTHHHHTGGGSSSS-----
T ss_pred HHHHH----HH------HhHHHhhHHHH---------------------------HHHHHHHHHHHHHHhhCCCH-----
Confidence 65554 31 11111111000 00001122355555554211
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHH---HHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhhh
Q psy14676 821 TIVALSHLVMSCNLQLTIVALSHLVMSCNLQL---YTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIER 897 (1827)
Q Consensus 821 ~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~---~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ 897 (1827)
.+|..|+.|++.++...+..+ +..+++.+.. +..++++.+|+.++.+++.+.+..++.+.||++.
T Consensus 187 -----------~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~~l~~ 254 (888)
T d1qbkb_ 187 -----------KIRSHAVACVNQFIISRTQALMLHIDSFTENLFA-LAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHN 254 (888)
T ss_dssp -----------CSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHT-TSSCCCSSSTTHHHHTTTTTSCSCTTTTTTTTTT
T ss_pred -----------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 278899999999988766443 3444443333 3346778999999999999999999999999999
Q ss_pred hHHHHHHhhcccchHHHHHHHHHHHHHHhhCC-----CccccccccccccC-CcchhhhhHHHHHhhc-------CCChH
Q psy14676 898 VMPLILKYSREEDDELREFCLQACEAFVQRCP-----KEITPHIQSIGRHT-DLTSVADLKQVILNAF-------TPTSE 964 (1827)
Q Consensus 898 ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~-----~~i~p~l~~i~~~~-~~s~~~~L~~~l~~~~-------~~~~e 964 (1827)
+++.+++.+.++++++| ++|+++|...|. ..+.+|++.+++.. +...+.+......... .+..+
T Consensus 255 i~~~~l~~~~~~~e~v~---~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (888)
T d1qbkb_ 255 IVEYMLQRTQDQDENVA---LEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQ 331 (888)
T ss_dssp TTTTTTTTTTSSCHHHH---HHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCCGG
T ss_pred HHHHHHHhcCCCcHHHH---HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhhHH
Confidence 99999999999998886 567888877664 34667777666521 0000000000000000 00011
Q ss_pred hHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHh---hhhccccchhhHHHHHHhhhcccCCCCchHHHH-
Q psy14676 965 EVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFL---HCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQ- 1040 (1827)
Q Consensus 965 ~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~---~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~- 1040 (1827)
+++..-... ..................... .....+..+|..++.+|+.++...++.++|.+.
T Consensus 332 ~i~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~il~~~l~ 398 (888)
T d1qbkb_ 332 DIRPRFHRS-------------RTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILP 398 (888)
T ss_dssp GCCCCCCCC-------------CCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSSSHHHHHH
T ss_pred HHHHHHHHH-------------HHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHHHHHHHHHH
Confidence 111000000 000000000000000000000 011233568889999999999888777665444
Q ss_pred ---HHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhc
Q psy14676 1041 ---ESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIR 1117 (1827)
Q Consensus 1041 ---~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~ 1117 (1827)
+.+.+++|..|++++.+|+.++..+.+.+.+| ++.++|.++..++|+.+.||..++++++.+...+.
T Consensus 399 ~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~----------l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~ 468 (888)
T d1qbkb_ 399 LLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY----------LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV 468 (888)
T ss_dssp HHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTT----------HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHhhccchhHHHHHHHHHhhhhhhhHHHHhccc----------chhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Confidence 55578899999999999999988888888888 99999999999999999999999999999998765
Q ss_pred cCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhh--hHHHHH
Q psy14676 1118 PLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEI--TRLTTV 1195 (1827)
Q Consensus 1118 ~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~--tR~~av 1195 (1827)
+ ....+|+.++++.++..+. |.++.|+++|+.|++.+.+..+..+.|+++.+++.++..+.... .+..+.
T Consensus 469 ~------~~~~~~~~~~l~~ll~~l~--d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~ 540 (888)
T d1qbkb_ 469 S------QPPDTYLKPLMTELLKRIL--DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILY 540 (888)
T ss_dssp S------SCHHHHTTTHHHHHHHHHS--SSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred h------hhhhhhhhhhHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3 3345688889999999987 88899999999999999999999999999999999999887533 366777
Q ss_pred HHHHHHhcCCC-ccccchhhhhhHhhhhhhhc---chhHHHHHHHHHHHHHHHHhCCCCcChH---hHHHHHHHhhh---
Q psy14676 1196 KALTKIAASPL-RIDLRPILTDGIPILGSFLR---KNQRALKLSTLLLLDTLLVNYPSAISTE---MLNKVTVELAP--- 1265 (1827)
Q Consensus 1196 ~al~~ia~~~~-~~dl~p~~~~~l~~L~~~Lr---k~~r~lR~~al~aL~~L~~~~~~~l~~~---~~~~ll~~L~~--- 1265 (1827)
.+++.++.+.. ...-.++...+++.+..... +++. .+...++++..++...+....+. .++.++..+..
T Consensus 541 ~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 619 (888)
T d1qbkb_ 541 DAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDK-DLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLA 619 (888)
T ss_dssp HHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCT-THHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 78887775332 12223455666665544332 2222 33456888888888776654331 22222221111
Q ss_pred ----------hcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccC-CCchhhHHHHHHHhcCCCCHhHHH
Q psy14676 1266 ----------LVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTD-LTSVADLKQVILNAFTPTSEEVKS 1334 (1827)
Q Consensus 1266 ----------ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~-~~~~~~l~~~~l~~~~~~s~eVr~ 1334 (1827)
.....+..+...++.+++.+++. +|.... +-....++++++.++.+.+.+||.
T Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~----------------l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~ 683 (888)
T d1qbkb_ 620 QAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEG----------------LGGNIEQLVARSNILTLMYQCMQDKMPEVRQ 683 (888)
T ss_dssp HHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHH----------------HTTTTHHHHHTSCHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHHHHH----------------hhhhhhhhhhHhhHHHHHHHHhCCCChHHHH
Confidence 11122344444444455444442 222210 001135889999999999999999
Q ss_pred HHHHHHhhhhh---hhhhhhHHHHH----Hhhhc-CchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhc
Q psy14676 1335 AASYTLGSIAV---GNLQQYVPFVL----KEIEN-QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCE 1406 (1827)
Q Consensus 1335 aAa~aLG~i~~---~~l~~~LP~Il----~~i~~-~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~ 1406 (1827)
+|...+|+++. ..+.+|++.++ +.+++ ....+..+.++++|++.+. +..++||++.+++.|+..+.
T Consensus 684 ~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~------~~~~~py~~~il~~L~~il~ 757 (888)
T d1qbkb_ 684 SSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQM------GIEMQPYIPMVLHQLVEIIN 757 (888)
T ss_dssp HHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHT------GGGGGGGSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHH------HHHhhhhHHHHHHHHHHHHc
Confidence 99999998643 34555555554 44443 2345566789999998743 57899999999999999886
Q ss_pred CC--chhHHHHHHHHHHHhhccCCCcchHHHHHhh-------h-cCCHHHHHHHHHHHHHHhhhcCCCCC
Q psy14676 1407 CQ--EEGTRNVVAECLGKLTLIDPSNLLPRLQESL-------K-SNSALMRTTVLTAVKFTISDQMTSSD 1466 (1827)
Q Consensus 1407 ~~--~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l-------~-~~~~~~R~t~l~Alk~~~~~~~~~~d 1466 (1827)
++ .+.++..+|.|||||+..+|+.+.|++.+++ . ..+...+.++...+..++...+..+-
T Consensus 758 ~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~~ 827 (888)
T d1qbkb_ 758 RPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVI 827 (888)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGTG
T ss_pred CCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHHH
Confidence 43 3557888999999999999976655554443 2 34666788888899888877665443
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=6.5e-27 Score=304.53 Aligned_cols=554 Identities=14% Similarity=0.160 Sum_probs=404.3
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCccccccc
Q psy14676 858 DFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQ 937 (1827)
Q Consensus 858 ~~l~~~l~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~v~~~~~~i~p~l~ 937 (1827)
..+++.+. +.++.+|..++..++.++...|..- -..+++|++.+.+.|++ +++..+.++++.+ .++++
T Consensus 13 ~~l~~~l~-~~~~~~R~~a~~~l~~ia~~lg~~~--~~~~lip~l~~~~~~~~-ev~~~~~~~l~~~--------~~~~~ 80 (588)
T d1b3ua_ 13 AVLIDELR-NEDVQLRLNSIKKLSTIALALGVER--TRSELLPFLTDTIYDED-EVLLALAEQLGTF--------TTLVG 80 (588)
T ss_dssp HHHHHHTT-CSCHHHHHHHHHTHHHHHHHSCHHH--HHHTHHHHHHHTCCCCH-HHHHHHHHHHTTC--------SGGGT
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHHHHhCcHh--hHHHHHHHHHHHhcCcH-HHHHHHHHHHHHH--------HHHcC
Confidence 33455555 4578899999999999999887632 23679999999887654 5654443433211 11110
Q ss_pred cccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchh
Q psy14676 938 SIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTR 1017 (1827)
Q Consensus 938 ~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR 1017 (1827)
+++....++|. +...+.+++..||
T Consensus 81 ----------------------------------------------------~~~~~~~ll~~----l~~l~~~~~~~Vr 104 (588)
T d1b3ua_ 81 ----------------------------------------------------GPEYVHCLLPP----LESLATVEETVVR 104 (588)
T ss_dssp ----------------------------------------------------SGGGGGGGHHH----HHHHTTSSCHHHH
T ss_pred ----------------------------------------------------ChhHHHHHHHH----HHHHccCCCHHHH
Confidence 01111222232 2223466778899
Q ss_pred hHHHHHHhhhcccCC-----CCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHH
Q psy14676 1018 NVVAECLGKLTLIDP-----SNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIA 1092 (1827)
Q Consensus 1018 ~~a~e~Lg~L~~~~~-----~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~ 1092 (1827)
..|+++|+.++...+ ..++|.+.+..++++...|..++.+++.++....... ...+++.+.+
T Consensus 105 ~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~-------------~~~l~~~~~~ 171 (588)
T d1b3ua_ 105 DKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV-------------KAELRQYFRN 171 (588)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH-------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHH-------------HHHHHHHHHH
Confidence 999999999887654 3467777777788888899999999987765544332 4457888899
Q ss_pred hhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhH-HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhh
Q psy14676 1093 SVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFT-SDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLK 1171 (1827)
Q Consensus 1093 ~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l-~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~ 1171 (1827)
.+.|+.+.||..|..+++.+++.+.+ ++. ..+++.+...+ +|.+..||..|+.+++.+...++. .
T Consensus 172 l~~D~~~~VR~~a~~~l~~~~~~~~~----------~~~~~~l~~~l~~l~--~d~~~~vr~~a~~~l~~i~~~~~~--~ 237 (588)
T d1b3ua_ 172 LCSDDTPMVRRAAASKLGEFAKVLEL----------DNVKSEIIPMFSNLA--SDEQDSVRLLAVEACVNIAQLLPQ--E 237 (588)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHTSCH----------HHHHHTHHHHHHHHH--TCSCHHHHTTHHHHHHHHHHHSCH--H
T ss_pred HhccCCHHHHHHHHHHHHHHHHHhcH----------HHHHHHHHHHHHHHh--cCCchhhHHHHHHHHHHhhccCCH--H
Confidence 99999999999999999999986532 222 33445444444 488999999999999999987765 2
Q ss_pred hhhhhhHHHHHHhhhhhhh--HHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCC
Q psy14676 1172 SELPVCLPILLDRLRNEIT--RLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPS 1249 (1827)
Q Consensus 1172 ~~l~~lL~~Ll~~L~~e~t--R~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~ 1249 (1827)
.....++|.+...+++.++ |..++++++.++..... ......+++.+...+.+.+..+|..++.++..++...+.
T Consensus 238 ~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~ 314 (588)
T d1b3ua_ 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA 314 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhh---hhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhh
Confidence 3455678888888877765 89999999998864221 223356788899999999999999999999999997765
Q ss_pred CcCh-HhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCC
Q psy14676 1250 AIST-EMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPT 1328 (1827)
Q Consensus 1250 ~l~~-~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~ 1328 (1827)
.... ...+.+++.+...++|.+.+++..+..++..++.. +|.. ...+.++|.+...+.++
T Consensus 315 ~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~----------------~~~~---~~~~~l~p~l~~~l~d~ 375 (588)
T d1b3ua_ 315 DCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPI----------------LGKD---NTIEHLLPLFLAQLKDE 375 (588)
T ss_dssp TTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHH----------------HCHH---HHHHHTHHHHHHHHTCS
T ss_pred hhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhc----------------cchh---HHHHHHHHHHHHHHHhh
Confidence 4332 35677888888999999999998866555444331 1211 12356889999999999
Q ss_pred CHhHHHHHHHHHhhhhh----hh-hhhhHHHHHHhhhc-CchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHh
Q psy14676 1329 SEEVKSAASYTLGSIAV----GN-LQQYVPFVLKEIEN-QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLF 1402 (1827)
Q Consensus 1329 s~eVr~aAa~aLG~i~~----~~-l~~~LP~Il~~i~~-~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~ 1402 (1827)
+++||.+++.+++.++. .. .+.++|.+.+.+++ ++..|..+..++..+.... |... +.+.+.+.++
T Consensus 376 ~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~-----~~~~---~~~~l~~~l~ 447 (588)
T d1b3ua_ 376 CPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQL-----GVEF---FDEKLNSLCM 447 (588)
T ss_dssp CHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH-----CGGG---CCHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHc-----ChHh---HHHHHHHHHH
Confidence 99999999988887542 22 34578888887766 3344555556666655422 2222 3456667777
Q ss_pred hhhcCCchhHHHHHHHHHHHhhccCC-----CcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhh
Q psy14676 1403 LHCECQEEGTRNVVAECLGKLTLIDP-----SNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDL 1477 (1827)
Q Consensus 1403 ~~~~~~~e~vR~~aAecLGkL~~~~p-----~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l 1477 (1827)
..+.+....+|..|+.+||+|+.... ..++|.+.++.+++++..|.+++.++..+....+. .
T Consensus 448 ~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~----~--------- 514 (588)
T d1b3ua_ 448 AWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ----D--------- 514 (588)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH----H---------
T ss_pred hhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCh----H---------
Confidence 77777788899999999999987543 35889999999999999999999999988743210 0
Q ss_pred hhhhhhcccccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccch
Q psy14676 1478 MSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGL 1557 (1827)
Q Consensus 1478 ~~~l~~~~~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~v 1557 (1827)
...+.++|.++++++|+++|||.+++++|+.+.+.++.......+.+++..+.+|.+. ||
T Consensus 515 -------------~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~L~~D~d~-------dV 574 (588)
T d1b3ua_ 515 -------------ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDV-------DV 574 (588)
T ss_dssp -------------HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSH-------HH
T ss_pred -------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHcCCCCH-------HH
Confidence 1235678999999999999999999999999999998888888888888888877665 99
Q ss_pred hHHHHHHHhhhh
Q psy14676 1558 KTVISVVYCLGD 1569 (1827)
Q Consensus 1558 Rr~Al~~l~s~a 1569 (1827)
|++|..++...+
T Consensus 575 r~~A~~al~~l~ 586 (588)
T d1b3ua_ 575 KYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=6.1e-24 Score=286.84 Aligned_cols=390 Identities=13% Similarity=0.183 Sum_probs=281.4
Q ss_pred CchHHHHHHHHHHHHHHHh-hCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCch---hH
Q psy14676 3 SDKEQLRDISSIGLKTVIS-ELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSF---HF 78 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~-~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~---~~ 78 (1827)
+....+|..++.++..+.. ++|... .++++|.|++.+.++.+..++..|+.+|+.+++..++.+..+ ..
T Consensus 106 ~~~~~vr~~~a~~i~~i~~~~~p~~~-------wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~ 178 (861)
T d2bpta1 106 SIEPRIANAAAQLIAAIADIELPHGA-------WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSN 178 (861)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHGGGTC-------CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcCc-------hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4456788888888888765 355422 678999999999776678899999999999999998776553 45
Q ss_pred HHHHHHhhhcC--CCCHHHHHHHHHHHHHHHHhhchhH-----HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhch
Q psy14676 79 VILTALLPQLS--SPRQAVRKRTIVALSHLVMSCNLQL-----YTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGH 151 (1827)
Q Consensus 79 ~il~~ll~~L~--~~~~~VRk~Ai~aL~~l~~~~~~~~-----~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~ 151 (1827)
.++..+++.+. +++..||..|+.+++.+...++... ...+++.+...+ +++++.+|..+++++..+++..++
T Consensus 179 ~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~i~~~~~~ 257 (861)
T d2bpta1 179 NILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEAT-QAEDIEVQAAAFGCLCKIMSKYYT 257 (861)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHH-TCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHh-cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 77777777765 4568999999999999998876542 223333444444 346788999999999999999999
Q ss_pred hhHHhHHHHHHHHH-hhcccCchHHHHHHHHHHHHHHHh----------CCC-------ccccchHHHHHHHHHHhccCC
Q psy14676 152 RFAEHIERVMPLIL-KYSREEDDELREFCLQACEAFVQR----------CPK-------EITPHIQSITELCLTYITYDP 213 (1827)
Q Consensus 152 ~~~p~l~~i~p~l~-~~~~~~~delRe~al~ale~~~~~----------~p~-------e~~p~l~~ii~~ll~~l~~dp 213 (1827)
.+.||+..++..+. ....+.++++|..++..+..+... .+. ...++++.+++.+++.+.+..
T Consensus 258 ~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~ 337 (861)
T d2bpta1 258 FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN 337 (861)
T ss_dssp GCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999988766554 445567888887776655444331 111 123456777777777664320
Q ss_pred CCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhh
Q psy14676 214 NYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIAR 293 (1827)
Q Consensus 214 n~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~ 293 (1827)
+|+++..|.+|.++..+++.++...++ .+++.+.+.+...
T Consensus 338 -------------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~ 377 (861)
T d2bpta1 338 -------------------------------------EDPEDDDWNVSMSAGACLQLFAQNCGN---HILEPVLEFVEQN 377 (861)
T ss_dssp -------------------------------------CC-CCCCCHHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHH
T ss_pred -------------------------------------ccccchhHHHHHHHHHHHHHHHhhcch---hhhhhhcchhhhh
Confidence 001123488999999999999988775 4567777888888
Q ss_pred cCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHH
Q psy14676 294 FKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLREL 373 (1827)
Q Consensus 294 l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L 373 (1827)
+.+.+|.+|.+++.+++.+.... ....+.+.++.+++.+.+.+.|+++.||.+++..++.+
T Consensus 378 ~~~~~~~~~~~a~~~l~~i~~~~-------------------~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l 438 (861)
T d2bpta1 378 ITADNWRNREAAVMAFGSIMDGP-------------------DKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRI 438 (861)
T ss_dssp TTCSSHHHHHHHHHHHHHTSSSS-------------------CHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhc-------------------chhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHH
Confidence 89999999999999998877321 12456788999999999999999999999999999999
Q ss_pred HHhCcccc--cCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHH
Q psy14676 374 VQTLPGCL--APSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAI 451 (1827)
Q Consensus 374 ~~vl~~~l--~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l 451 (1827)
...++... ..+++.+++.+...+.+ +.+++..+..++..+
T Consensus 439 ~~~~~~~~~~~~~~~~ll~~l~~~~~~--------------------------------------~~~~~~~~~~~~~~l 480 (861)
T d2bpta1 439 ADSVAESIDPQQHLPGVVQACLIGLQD--------------------------------------HPKVATNCSWTIINL 480 (861)
T ss_dssp HHHHGGGSCTTTTHHHHHHHHHHHHTS--------------------------------------CHHHHHHHHHHHHHH
T ss_pred HHHhchhhhhHHhhhhhhHHHHhcccc--------------------------------------ChHHHHHHHHHHHHH
Confidence 99887754 45788888887777521 234666677777777
Q ss_pred HHHhh----hhhhhhHHhhhhhHHHhh--cchhhhhHHHHHHHHHHHHhhcc
Q psy14676 452 IATRR----DLIGDMYRLVSPPLIARF--KEREENVKSDIFHAYMALLKGTR 497 (1827)
Q Consensus 452 ~~~~~----~~f~~~~~~l~~~L~~~~--~d~~~~Vr~~a~~~l~~L~~~~g 497 (1827)
+.... ..+.+++..++..++... .+....+|..++.++..+++..+
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~ 532 (861)
T d2bpta1 481 VEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYAT 532 (861)
T ss_dssp HHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCC
T ss_pred HHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhH
Confidence 76655 234455555555555544 23355677777766666665443
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.4e-25 Score=291.78 Aligned_cols=561 Identities=15% Similarity=0.168 Sum_probs=397.3
Q ss_pred CCchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc--hhHH
Q psy14676 2 VSDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS--FHFV 79 (1827)
Q Consensus 2 ~~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~--~~~~ 79 (1827)
-+++.++|--+.-.|.++...+.+.. .+++|+|.|.+.++++ .+++.++...| ..+.+.+++ +...
T Consensus 20 ~~~~~~~R~~a~~~l~~ia~~lg~~~------~~~~lip~l~~~~~~~--~ev~~~~~~~l----~~~~~~~~~~~~~~~ 87 (588)
T d1b3ua_ 20 RNEDVQLRLNSIKKLSTIALALGVER------TRSELLPFLTDTIYDE--DEVLLALAEQL----GTFTTLVGGPEYVHC 87 (588)
T ss_dssp TCSCHHHHHHHHHTHHHHHHHSCHHH------HHHTHHHHHHHTCCCC--HHHHHHHHHHH----TTCSGGGTSGGGGGG
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCcHh------hHHHHHHHHHHHhcCc--HHHHHHHHHHH----HHHHHHcCChhHHHH
Confidence 45677889888889999988886533 4789999999988643 34554444444 444443322 3446
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHH
Q psy14676 80 ILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIER 159 (1827)
Q Consensus 80 il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~ 159 (1827)
+++.+...+.++++.||..|+.++..++..+++..+...+.+++..|.++++...|..++..++.++....... ...
T Consensus 88 ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~---~~~ 164 (588)
T d1b3ua_ 88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV---KAE 164 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH---HHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHH---HHH
Confidence 77777777889999999999999999999998888877777888888776777888889888888876655443 456
Q ss_pred HHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccC
Q psy14676 160 VMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEED 239 (1827)
Q Consensus 160 i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d 239 (1827)
++|.+.+.++++++.+|+.+..++..++...+.+. ..+.++|.+.+.+.
T Consensus 165 l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~l~~----------------------------- 213 (588)
T d1b3ua_ 165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN--VKSEIIPMFSNLAS----------------------------- 213 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHH--HHHTHHHHHHHHHT-----------------------------
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHH--HHHHHHHHHHHHhc-----------------------------
Confidence 78888999999999999999999999999876542 12456777665541
Q ss_pred CCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhccc
Q psy14676 240 GEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTF 319 (1827)
Q Consensus 240 ~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~ 319 (1827)
|..|.||.+|..++..++...++ ......++|.+...++++.|.||..++.+++.++...+.
T Consensus 214 ---------------d~~~~vr~~a~~~l~~i~~~~~~--~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~- 275 (588)
T d1b3ua_ 214 ---------------DEQDSVRLLAVEACVNIAQLLPQ--EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP- 275 (588)
T ss_dssp ---------------CSCHHHHTTHHHHHHHHHHHSCH--HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH-
T ss_pred ---------------CCchhhHHHHHHHHHHhhccCCH--HHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhh-
Confidence 12478999999999999987664 345667899999999999999999999999998864321
Q ss_pred CCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccc--cCchhhHHHHHHHHhh
Q psy14676 320 SPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCL--APSLPALIPDVTSVAE 397 (1827)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l--~~~l~~Llp~i~~~L~ 397 (1827)
....+.+++.+.+.++|+++.||..+...++.++..++... ..+++.++|.+...+.
T Consensus 276 ---------------------~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~ 334 (588)
T d1b3ua_ 276 ---------------------EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVS 334 (588)
T ss_dssp ---------------------HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHT
T ss_pred ---------------------hhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhc
Confidence 11234678889999999999999999999999998886543 3567888999888872
Q ss_pred hhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcch
Q psy14676 398 WDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKER 477 (1827)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~ 477 (1827)
|.+|.+|..+..++..++...|. ..+.+.+.|.+...++|.
T Consensus 335 -------------------------------------d~~~~vr~~~~~~l~~~~~~~~~--~~~~~~l~p~l~~~l~d~ 375 (588)
T d1b3ua_ 335 -------------------------------------DANQHVKSALASVIMGLSPILGK--DNTIEHLLPLFLAQLKDE 375 (588)
T ss_dssp -------------------------------------CSCHHHHHHHHTTGGGGHHHHCH--HHHHHHTHHHHHHHHTCS
T ss_pred -------------------------------------CCChHHHHHHHHHHhhhhhccch--hHHHHHHHHHHHHHHHhh
Confidence 35799999999999988877762 134456788888889999
Q ss_pred hhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCC
Q psy14676 478 EENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSS 557 (1827)
Q Consensus 478 ~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~ 557 (1827)
.+.||..++..+..+....|..
T Consensus 376 ~~~v~~~~~~~l~~~~~~~~~~---------------------------------------------------------- 397 (588)
T d1b3ua_ 376 CPEVRLNIISNLDCVNEVIGIR---------------------------------------------------------- 397 (588)
T ss_dssp CHHHHHHHHTTCHHHHHHSCHH----------------------------------------------------------
T ss_pred hhhhhhHHHHHHHHHHhhcchh----------------------------------------------------------
Confidence 9999999887766666544410
Q ss_pred CccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccch
Q psy14676 558 DKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDG 637 (1827)
Q Consensus 558 dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~ 637 (1827)
.....+++.+...+.|.+.++|..+..+++.+++.++.. .+.+.+
T Consensus 398 -------------------------~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~----------~~~~~l 442 (588)
T d1b3ua_ 398 -------------------------QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE----------FFDEKL 442 (588)
T ss_dssp -------------------------HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG----------GCCHHH
T ss_pred -------------------------hhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChH----------hHHHHH
Confidence 011234455555566666677777777777666655431 123344
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhh
Q psy14676 638 IPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPA 717 (1827)
Q Consensus 638 i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~ 717 (1827)
.|.+..++.++.+..|.+++.++..+...++. +..
T Consensus 443 ~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~---------------------------------------------~~~ 477 (588)
T d1b3ua_ 443 NSLCMAWLVDHVYAIREAATSNLKKLVEKFGK---------------------------------------------EWA 477 (588)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---------------------------------------------HHH
T ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHHHhCc---------------------------------------------HHH
Confidence 55556666666666666655555555332221 001
Q ss_pred hhhhhHHHhhhhcccccchhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhh
Q psy14676 718 AASILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQR 797 (1827)
Q Consensus 718 ~~~llp~ll~l~~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~ 797 (1827)
...++|.+..+.
T Consensus 478 ~~~i~~~l~~~~-------------------------------------------------------------------- 489 (588)
T d1b3ua_ 478 HATIIPKVLAMS-------------------------------------------------------------------- 489 (588)
T ss_dssp HHHTHHHHHHTT--------------------------------------------------------------------
T ss_pred HHHHHHHHHHHh--------------------------------------------------------------------
Confidence 112233332111
Q ss_pred hhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHH-HHHHHHhhhcCCCChhhHHHH
Q psy14676 798 EALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTK-LIDFLLEGLTTNKSTSTNRTY 876 (1827)
Q Consensus 798 ~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~-l~~~l~~~l~~~~~~~vr~~~ 876 (1827)
.+ +. ...|..++.|++.+...++.+.+.+ +.+.++. +.+|+.+.||.++
T Consensus 490 -------------~~---~~-------------~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~-~~~D~v~nVR~~a 539 (588)
T d1b3ua_ 490 -------------GD---PN-------------YLHRMTTLFCINVLSEVCGQDITTKHMLPTVLR-MAGDPVANVRFNV 539 (588)
T ss_dssp -------------TC---SC-------------HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-GGGCSCHHHHHHH
T ss_pred -------------cC---CC-------------HHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHH-HcCCCCHHHHHHH
Confidence 00 00 1256667777777777777666543 3444443 4557889999999
Q ss_pred HHHHHHHHHhccccchhhhhhhHHHHHHhhcccchHHHHHHHHHHHHH
Q psy14676 877 IQCFAAICRQAGHRFAEHIERVMPLILKYSREEDDELREFCLQACEAF 924 (1827)
Q Consensus 877 l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~~~vre~al~Ale~~ 924 (1827)
+.+++.+....++. .+-..+.|.+.+.+.|+|.+||.+|.+|++.+
T Consensus 540 ~~~l~~i~~~~~~~--~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 540 AKSLQKIGPILDNS--TLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHGGGSCHH--HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcH--hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999998877663 34556777777777788999999999998864
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=7e-23 Score=276.38 Aligned_cols=734 Identities=13% Similarity=0.131 Sum_probs=484.0
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhc------------
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEK-QEDVSVQLEALDILSDLLSRF------------ 69 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~-~~~~~v~~~al~iL~~l~~~~------------ 69 (1827)
|.+..+|.-+.-.|+.+..+- ....++.|++.+.+ +.+..+|..|.-.|-..+...
T Consensus 16 s~d~~~r~~Ae~~L~~~~~~~-----------~~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~ 84 (861)
T d2bpta1 16 SPDQNIRLTSETQLKKLSNDN-----------FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRW 84 (861)
T ss_dssp CSSHHHHHHHHHHHHHHHHHC-----------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcC-----------chHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhhh
Confidence 445667777777777665432 12355677777744 346788888876665443221
Q ss_pred cCCCCc-hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHh-hchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Q psy14676 70 GALLPS-FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMS-CNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICR 147 (1827)
Q Consensus 70 ~~~l~~-~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~-~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~ 147 (1827)
.+.+.+ ....+...+++.|.++++.||..+..+++.++.. .+...|+++++.+++.+.++....+|..++.+++.+++
T Consensus 85 ~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e 164 (861)
T d2bpta1 85 ITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCE 164 (861)
T ss_dssp HHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 122333 3446778888999999999999999999999875 44446888999999998776677889999999999999
Q ss_pred HhchhhHH---hHHHHHHHHHhhcc--cCchHHHHHHHHHHHHHHHhCCCccc--cchHHHHHHHHHHhccCCCCCcccc
Q psy14676 148 QAGHRFAE---HIERVMPLILKYSR--EEDDELREFCLQACEAFVQRCPKEIT--PHIQSITELCLTYITYDPNYNYEDE 220 (1827)
Q Consensus 148 ~~~~~~~p---~l~~i~p~l~~~~~--~~~delRe~al~ale~~~~~~p~e~~--p~l~~ii~~ll~~l~~dpn~~~~dd 220 (1827)
..+..+.+ ++..+++.+++.+. +.+.++|..|+.++..++..++..+. ...+.+++.+.+.+..
T Consensus 165 ~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------- 235 (861)
T d2bpta1 165 SADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQA--------- 235 (861)
T ss_dssp TSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTC---------
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcC---------
Confidence 88765544 44455555555443 34678999999999888887765332 2344556666554421
Q ss_pred cccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHH-HhhcCCCCH
Q psy14676 221 EEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPL-IARFKEREE 299 (1827)
Q Consensus 221 d~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L-~~~l~e~ee 299 (1827)
..|++|..+.+++..++..+++.+.+++..++..+ ....++.++
T Consensus 236 -----------------------------------~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 280 (861)
T d2bpta1 236 -----------------------------------EDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPND 280 (861)
T ss_dssp -----------------------------------SCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSH
T ss_pred -----------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH
Confidence 12579999999999999999998888888766554 456688999
Q ss_pred hHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhcc-------CCHhHHHHHHHHHHH
Q psy14676 300 NVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLRE-------KSIRTRQDCLALLRE 372 (1827)
Q Consensus 300 ~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d-------~~~~vR~a~~~ll~~ 372 (1827)
++|..++..+..+.+.............. ............++.+++.+.+.+.+ ....+|.++...+..
T Consensus 281 ~v~~~~~~~l~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 357 (861)
T d2bpta1 281 KVASMTVEFWSTICEEEIDIAYELAQFPQ---SPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQL 357 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTT---CSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 99999999888876543210000000000 00011133455666677777766542 334688888888998
Q ss_pred HHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHH
Q psy14676 373 LVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAII 452 (1827)
Q Consensus 373 L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~ 452 (1827)
+....|+. .++.+.+.+...+ .+.+|+.|.++..+++.++
T Consensus 358 ~~~~~~~~---~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~a~~~l~~i~ 397 (861)
T d2bpta1 358 FAQNCGNH---ILEPVLEFVEQNI-------------------------------------TADNWRNREAAVMAFGSIM 397 (861)
T ss_dssp HHHHHGGG---GHHHHHHHHHHHT-------------------------------------TCSSHHHHHHHHHHHHHTS
T ss_pred HHhhcchh---hhhhhcchhhhhh-------------------------------------hhHHHHHHHHHHHHHHHHH
Confidence 88888753 3455555555443 1246999999999999998
Q ss_pred HHhh-hhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHH
Q psy14676 453 ATRR-DLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKAL 531 (1827)
Q Consensus 453 ~~~~-~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l 531 (1827)
...+ ..+.++++.+++.+.+.+.|.++.||..+..+++.+.+.++.....
T Consensus 398 ~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~----------------------------- 448 (861)
T d2bpta1 398 DGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP----------------------------- 448 (861)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCT-----------------------------
T ss_pred hhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhh-----------------------------
Confidence 7666 6677899999999999999999999999999999998876521000
Q ss_pred HHHhhhhhhhhHHhHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhh
Q psy14676 532 QCQLREKSIRTRQDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCL 611 (1827)
Q Consensus 532 ~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~l 611 (1827)
......+++.+...+.+ +..++..+..++
T Consensus 449 --------------------------------------------------~~~~~~ll~~l~~~~~~-~~~~~~~~~~~~ 477 (861)
T d2bpta1 449 --------------------------------------------------QQHLPGVVQACLIGLQD-HPKVATNCSWTI 477 (861)
T ss_dssp --------------------------------------------------TTTHHHHHHHHHHHHTS-CHHHHHHHHHHH
T ss_pred --------------------------------------------------HHhhhhhhHHHHhcccc-ChHHHHHHHHHH
Confidence 00111222223333333 223333333322
Q ss_pred hhHHHHhhhhhcCcccccccccccchhhhhhhhhhhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcch
Q psy14676 612 GPLFKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESD 691 (1827)
Q Consensus 612 g~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 691 (1827)
..++..+.+....+
T Consensus 478 ~~l~~~~~~~~~~~------------------------------------------------------------------ 491 (861)
T d2bpta1 478 INLVEQLAEATPSP------------------------------------------------------------------ 491 (861)
T ss_dssp HHHHHHHSSSSSCG------------------------------------------------------------------
T ss_pred HHHHHHhhhcccch------------------------------------------------------------------
Confidence 22221111100000
Q ss_pred hhHHHHHHHHHhhhhccCCCccchhhhhhhhHHHhhhhcccccchhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhcccc
Q psy14676 692 LHIAQLTLTLLTSIAKIQPNALVEPAAASILPQVLQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVM 771 (1827)
Q Consensus 692 ~~i~~~a~~~~~~i~~~~~~~~~~~~~~~llp~ll~l~~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~ 771 (1827)
....+ ...+
T Consensus 492 --------------------------~~~~~-------------------------------------~~~~-------- 500 (861)
T d2bpta1 492 --------------------------IYNFY-------------------------------------PALV-------- 500 (861)
T ss_dssp --------------------------GGGGH-------------------------------------HHHH--------
T ss_pred --------------------------hhHHH-------------------------------------hhHH--------
Confidence 00000 0000
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHH
Q psy14676 772 TGTALHKQAFHSLAKCVAALAITVQREALPVVEKFLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQ 851 (1827)
Q Consensus 772 ~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~ 851 (1827)
T Consensus 501 -------------------------------------------------------------------------------- 500 (861)
T d2bpta1 501 -------------------------------------------------------------------------------- 500 (861)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhh-cCCCChhhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcccc----h-----------HHHH
Q psy14676 852 LYTKLIDFLLEGL-TTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSREED----D-----------ELRE 915 (1827)
Q Consensus 852 ~~~~l~~~l~~~l-~~~~~~~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d~~----~-----------~vre 915 (1827)
..++... ..+....+|..++.++..+....++.+.+|+..++|.+...+...- . +++.
T Consensus 501 ------~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 574 (861)
T d2bpta1 501 ------DGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQS 574 (861)
T ss_dssp ------HHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHH
T ss_pred ------HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 0000001 1123456777888888888999999999999999998887764200 0 0000
Q ss_pred HHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhh
Q psy14676 916 FCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQ 995 (1827)
Q Consensus 916 ~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~ 995 (1827)
.++.++..++..+ ...+.
T Consensus 575 ~~~~~l~~~~~~~--------------------------------------------------------------~~~~~ 592 (861)
T d2bpta1 575 NILTVLAAVIRKS--------------------------------------------------------------PSSVE 592 (861)
T ss_dssp HHHHHHHHHHHHC--------------------------------------------------------------GGGTG
T ss_pred HHHHHHHHHHhcc--------------------------------------------------------------hhhHH
Confidence 0001111111011 11223
Q ss_pred hhHHHHHHHHHhhhhccccchhhHHHHHHhhhcccCCCCchHHHHHHhc-cCChhhHHHHHHHHHHHHHhcccccccccc
Q psy14676 996 QFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLK-SNSALMRTTHQSNQTFNVIIQRNDIHNHNE 1074 (1827)
Q Consensus 996 ~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~-s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~ 1074 (1827)
++.+.++ +.+.+.+. ..+...|+.++.+++.+..+.+..+.||
T Consensus 593 ~~~~~l~----------------------------------~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~-- 636 (861)
T d2bpta1 593 PVADMLM----------------------------------GLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKY-- 636 (861)
T ss_dssp GGHHHHH----------------------------------HHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHH--
T ss_pred HHHHHHH----------------------------------HHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHH--
Confidence 3333333 33333343 3345678889999998888888888888
Q ss_pred chhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHH
Q psy14676 1075 ETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKER 1154 (1827)
Q Consensus 1075 ~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~ 1154 (1827)
++.++|.++.++.|..+.++..|+..++.+++.++ ..+.||+.++++.++..+.+.+.+.++|..
T Consensus 637 --------l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~-------~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~ 701 (861)
T d2bpta1 637 --------LETFSPYLLKALNQVDSPVSITAVGFIADISNSLE-------EDFRRYSDAMMNVLAQMISNPNARRELKPA 701 (861)
T ss_dssp --------HHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG-------GGGHHHHHHHHHHHHHHHHCTTCCTTHHHH
T ss_pred --------HHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhH-------HHhHhhHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 99999999999999999999999999999998764 578899999999999999876678899999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhh-------------hhHHHHHHHHHHHhcCC--CccccchhhhhhHh
Q psy14676 1155 AISCMGQIICNLGDYLKSELPVCLPILLDRLRNE-------------ITRLTTVKALTKIAASP--LRIDLRPILTDGIP 1219 (1827)
Q Consensus 1155 Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e-------------~tR~~av~al~~ia~~~--~~~dl~p~~~~~l~ 1219 (1827)
++.|+|.++...|..+.||++.+++.+.+.+... .-|..++.++..+.... ....+.||++.+++
T Consensus 702 ~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~p~~~~i~~ 781 (861)
T d2bpta1 702 VLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQ 781 (861)
T ss_dssp HHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998876421 12677777777665421 12236678877776
Q ss_pred hhhhhhcch----hHHHHHHHHHHHHHHHHhCCCC
Q psy14676 1220 ILGSFLRKN----QRALKLSTLLLLDTLLVNYPSA 1250 (1827)
Q Consensus 1220 ~L~~~Lrk~----~r~lR~~al~aL~~L~~~~~~~ 1250 (1827)
.+...+.+. +..++.+++.+++.++..++..
T Consensus 782 ~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 816 (861)
T d2bpta1 782 FIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDG 816 (861)
T ss_dssp HHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHhCCccCCCHHHHHHHHHHHHHHHHHCcch
Confidence 655555443 3467889999999999988764
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.2e-22 Score=269.71 Aligned_cols=362 Identities=15% Similarity=0.199 Sum_probs=258.7
Q ss_pred HHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhccC-CCCchhHHHHHHHhhhcCC--CCHHHHHHHHHHHHHHHHhh
Q psy14676 35 CRRITGKLSTAIEK-QEDVSVQLEALDILSDLLSRFGA-LLPSFHFVILTALLPQLSS--PRQAVRKRTIVALSHLVMSC 110 (1827)
Q Consensus 35 ~~~L~P~Ll~~l~~-~~~~~v~~~al~iL~~l~~~~~~-~l~~~~~~il~~ll~~L~~--~~~~VRk~Ai~aL~~l~~~~ 110 (1827)
.++++|.|++.+.+ +....++.+++.+|+.+++.+.+ .+..+...+++.+++.+.+ ++..+|..|+.++..+....
T Consensus 126 Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~ 205 (876)
T d1qgra_ 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (876)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred cHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHh
Confidence 46789999998854 34578899999999999998765 3455777899999999864 46799999999999988776
Q ss_pred chhH----HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHH-HHHHHHhhcccCchHHHHHHHHHHHH
Q psy14676 111 NLQL----YTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIER-VMPLILKYSREEDDELREFCLQACEA 185 (1827)
Q Consensus 111 ~~~~----~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~-i~p~l~~~~~~~~delRe~al~ale~ 185 (1827)
.... +..++...+..+.+++++.++..+++++..+++..++.+.+|+.. +.+++......+.++++..++..+..
T Consensus 206 ~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (876)
T d1qgra_ 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN 285 (876)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 5432 223333333344455678899999999999999999999999865 56666666777777777555544333
Q ss_pred HHHh---------------CCC------ccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCC
Q psy14676 186 FVQR---------------CPK------EITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEG 244 (1827)
Q Consensus 186 ~~~~---------------~p~------e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~ 244 (1827)
+... .+. ....+++.+++.+...+... +
T Consensus 286 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----------------------------~-- 334 (876)
T d1qgra_ 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ-----------------------------D-- 334 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCC-----------------------------C--
T ss_pred HHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhc-----------------------------c--
Confidence 3221 011 11234455666665544221 0
Q ss_pred CCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCC
Q psy14676 245 EDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTP 324 (1827)
Q Consensus 245 e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~ 324 (1827)
+++++..|.+|.+|..++..++...++ .+++.+.|.+.+.+.+.+|..|.+++.+++.+....
T Consensus 335 ------~~~~~~~~~~~~~a~~~l~~l~~~~~~---~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~-------- 397 (876)
T d1qgra_ 335 ------ENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP-------- 397 (876)
T ss_dssp ------SSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS--------
T ss_pred ------cccccccchHHHHHHHHHHHHHHHhhh---hhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhh--------
Confidence 011223589999999999999988775 457788899999999999999999999998766321
Q ss_pred CCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccc--cCchhhHHHHHHHHhhhhhcc
Q psy14676 325 SDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCL--APSLPALIPDVTSVAEWDEEE 402 (1827)
Q Consensus 325 ~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l--~~~l~~Llp~i~~~L~~~~~~ 402 (1827)
....+.+.++.+++.+.+.+.|+++.||.+++..++.+++.++... ..+++.+++.+...+.
T Consensus 398 -----------~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~----- 461 (876)
T d1qgra_ 398 -----------EPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS----- 461 (876)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT-----
T ss_pred -----------hHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhc-----
Confidence 1356788899999999999999999999999999999999998754 5678889998888762
Q ss_pred cCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhh--------------hhhhhHHhhhh
Q psy14676 403 GLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRD--------------LIGDMYRLVSP 468 (1827)
Q Consensus 403 ~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~--------------~f~~~~~~l~~ 468 (1827)
.+++++..++.++..++..... .+.+|++.+++
T Consensus 462 ---------------------------------~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~ 508 (876)
T d1qgra_ 462 ---------------------------------AEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQ 508 (876)
T ss_dssp ---------------------------------SCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHH
T ss_pred ---------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 1467888888888888765431 24456666666
Q ss_pred hHHHhhcch---hhhhHHHHHHHHHHHH
Q psy14676 469 PLIARFKER---EENVKSDIFHAYMALL 493 (1827)
Q Consensus 469 ~L~~~~~d~---~~~Vr~~a~~~l~~L~ 493 (1827)
.++..+.+. ..++|..++..+..++
T Consensus 509 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 536 (876)
T d1qgra_ 509 KLLETTDRPDGHQNNLRSSAYESLMEIV 536 (876)
T ss_dssp HHHHHTTSCSSCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccHhHHHHHHHHHHHhh
Confidence 655555332 2344555554444444
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=7.6e-20 Score=247.26 Aligned_cols=766 Identities=14% Similarity=0.160 Sum_probs=474.1
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHhhhcCCC--CHHHHHHHHHHHHHHHH---------------hhch
Q psy14676 50 EDVSVQLEALDILSDLLSRFGALLPSFHFVILTALLPQLSSP--RQAVRKRTIVALSHLVM---------------SCNL 112 (1827)
Q Consensus 50 ~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il~~ll~~L~~~--~~~VRk~Ai~aL~~l~~---------------~~~~ 112 (1827)
+|..+|..|=.-|.++...-.| ..+..+++.+.+. ...+|..|...|.+... .+++
T Consensus 13 ~d~~~r~~Ae~~L~~~~~~~~~-------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~ 85 (876)
T d1qgra_ 13 PDRLELEAAQKFLERAAVENLP-------TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDA 85 (876)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCH
T ss_pred cCHHHHHHHHHHHHHHHhcChh-------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCH
Confidence 4899999999999988765322 3455555555443 46899999999987763 2344
Q ss_pred hHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhccc--CchHHHHHHHHHHHHHHHhC
Q psy14676 113 QLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSRE--EDDELREFCLQACEAFVQRC 190 (1827)
Q Consensus 113 ~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~~~--~~delRe~al~ale~~~~~~ 190 (1827)
+....+...+++.|.++. .+++.++.+++.+++.... ...+++++|.+++.+.. ..+.+|+.++.++..++..+
T Consensus 86 ~~k~~ik~~ll~~l~~~~--~~~~~~a~~i~~i~~~~~p--~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~ 161 (876)
T d1qgra_ 86 NARREVKNYVLHTLGTET--YRPSSASQCVAGIACAEIP--VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI 161 (876)
T ss_dssp HHHHHHHHHHHHHTTTCC--SSSCHHHHHHHHHHHHHGG--GTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHHHHCC--ccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHC
Confidence 444555667777776532 3567788999999876421 12467899999887754 34678999999998888776
Q ss_pred C-CccccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHH
Q psy14676 191 P-KEITPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLE 269 (1827)
Q Consensus 191 p-~e~~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~ 269 (1827)
. ..+.++.+.+++.+++.+..+ +.+..+|.++.+++.
T Consensus 162 ~~~~~~~~~~~il~~i~~~l~~~------------------------------------------~~~~~v~~~a~~~l~ 199 (876)
T d1qgra_ 162 DPEQLQDKSNEILTAIIQGMRKE------------------------------------------EPSNNVKLAATNALL 199 (876)
T ss_dssp CHHHHGGGHHHHHHHHHHHHSTT------------------------------------------CSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCc------------------------------------------CccHHHHHHHHHHHH
Confidence 4 467889999999999877421 113478999999988
Q ss_pred HHHHHcCCc--hhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhh-HH
Q psy14676 270 AIIATRRDL--IGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQV-PS 346 (1827)
Q Consensus 270 ~l~~~~~~~--l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-p~ 346 (1827)
......+.. ...+...+++.+...+.+.++++|..++.++..+++... ..+.+++ +.
T Consensus 200 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~--------------------~~~~~~~~~~ 259 (876)
T d1qgra_ 200 NSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY--------------------QYMETYMGPA 259 (876)
T ss_dssp HHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSG--------------------GGCHHHHTTT
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH--------------------HHHHHHHHHH
Confidence 776554321 122344567777788889999999999999999986532 1223333 33
Q ss_pred HHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcc----------------cc-----cCchhhHHHHHHHHhhhhhcccCC
Q psy14676 347 LVKALQCQLREKSIRTRQDCLALLRELVQTLPG----------------CL-----APSLPALIPDVTSVAEWDEEEGLG 405 (1827)
Q Consensus 347 Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~----------------~l-----~~~l~~Llp~i~~~L~~~~~~~~~ 405 (1827)
+.+.+...+++....++..++.++..++..... .. ..+.+.++|.+...+.+
T Consensus 260 l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------- 332 (876)
T d1qgra_ 260 LFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK------- 332 (876)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHh-------
Confidence 555666777788888888887777766542211 11 12334445554444311
Q ss_pred CCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhhHHHhhcchhhhhHHHH
Q psy14676 406 GEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDI 485 (1827)
Q Consensus 406 ~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a 485 (1827)
.+ +++++..|.+|.+|..++..++...+..+ ++.+++.+...+.+..++.|.++
T Consensus 333 ----------~~-------------~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---~~~~~~~i~~~l~~~~~~~r~~~ 386 (876)
T d1qgra_ 333 ----------QD-------------ENDDDDDWNPCKAAGVCLMLLATCCEDDI---VPHVLPFIKEHIKNPDWRYRDAA 386 (876)
T ss_dssp ----------CC-------------SSCCTTCCCHHHHHHHHHHHHHHHHGGGG---HHHHHHHHHHHTTCSSHHHHHHH
T ss_pred ----------cc-------------cccccccchHHHHHHHHHHHHHHHhhhhh---hhhhHHHHHHhhccchHHHHHHH
Confidence 00 00112246799999999999998877433 34566777777888888888888
Q ss_pred HHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCCCccccccc
Q psy14676 486 FHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELMTSSDKDFRFMA 565 (1827)
Q Consensus 486 ~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~dpd~Rf~a 565 (1827)
...++.+.+....
T Consensus 387 ~~~l~~~~~~~~~------------------------------------------------------------------- 399 (876)
T d1qgra_ 387 VMAFGCILEGPEP------------------------------------------------------------------- 399 (876)
T ss_dssp HHHHHHTSSSSCH-------------------------------------------------------------------
T ss_pred HHHHHhhhhhhhH-------------------------------------------------------------------
Confidence 7666555432210
Q ss_pred hHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhHHHHhhhhhcCcccccccccccchhhhhhhhh
Q psy14676 566 TNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLFKALTKIAASPLRIDLRPILTDGIPILGSFL 645 (1827)
Q Consensus 566 ~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l~~~~~~~~~~~~~~dl~~~l~~~i~~l~~~l 645 (1827)
.. ......++++.+...+.|++..||+.|..++|.+++.++.... ...+++.+++.+...+
T Consensus 400 -~~------------~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~------~~~~~~~~~~~l~~~l 460 (876)
T d1qgra_ 400 -SQ------------LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAI------NDVYLAPLLQCLIEGL 460 (876)
T ss_dssp -HH------------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTS------STTTHHHHHHHHHHHT
T ss_pred -HH------------HHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhh------hHHHhhhHHHHHHHHh
Confidence 00 0012345677788888999999999999999999877664211 1122222222222222
Q ss_pred hhhhhhhhhhhHHHHHHHHhhCCCcccHHHHHHHHHHhCcCCCcchhhHHHHHHHHHhhhhccCCCccchhhhhhhhHHH
Q psy14676 646 RKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQV 725 (1827)
Q Consensus 646 ~~~~~~lk~~~l~~l~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~a~~~~~~i~~~~~~~~~~~~~~~llp~l 725 (1827)
.++.+ .+
T Consensus 461 ~~~~~-v~------------------------------------------------------------------------ 467 (876)
T d1qgra_ 461 SAEPR-VA------------------------------------------------------------------------ 467 (876)
T ss_dssp TSCHH-HH------------------------------------------------------------------------
T ss_pred cCCHH-HH------------------------------------------------------------------------
Confidence 11100 00
Q ss_pred hhhhcccccchhhhhhHHHHHHHHHhhhCCCCCHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhhhhhhhHHHH
Q psy14676 726 LQIAKSPLLQGAALTSMLEFFKSLVLAELPGLSFSELLNMLIAPVMTGTALHKQAFHSLAKCVAALAITVQREALPVVEK 805 (1827)
Q Consensus 726 l~l~~s~~~~~~al~~l~~~~~~lv~~~~~~~~~~~ll~~L~~~~~~~~~~~~~al~~~~~~~g~~~~~~~~~~~~~v~~ 805 (1827)
..
T Consensus 468 ----------~~-------------------------------------------------------------------- 469 (876)
T d1qgra_ 468 ----------SN-------------------------------------------------------------------- 469 (876)
T ss_dssp ----------HH--------------------------------------------------------------------
T ss_pred ----------HH--------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHhhccCCCchhHHHHHHhhhhhhhhhHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHH
Q psy14676 806 FLKELKTNKDDAHQVTIVALSHLVMSCNLQLTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICR 885 (1827)
Q Consensus 806 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~r~~Ai~aL~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~~l~~l~~L~~ 885 (1827)
+..++..+..... . ... .+....+
T Consensus 470 -------------------------------~~~~l~~l~~~~~------------~-~~~------------~~~~~~~ 493 (876)
T d1qgra_ 470 -------------------------------VCWAFSSLAEAAY------------E-AAD------------VADDQEE 493 (876)
T ss_dssp -------------------------------HHHHHHHHHHHHH------------H-TTS------------CTTSCCC
T ss_pred -------------------------------HHHHHHHHHHHHH------------H-HHH------------HHHHHHh
Confidence 0000000000000 0 000 0000001
Q ss_pred hccccchhhhhhhHHHHHHhhccc---chHHHHHHHHHHHHHHhhCCCccccccccccccCCcchhhhhHHHHHhhcCCC
Q psy14676 886 QAGHRFAEHIERVMPLILKYSREE---DDELREFCLQACEAFVQRCPKEITPHIQSIGRHTDLTSVADLKQVILNAFTPT 962 (1827)
Q Consensus 886 ~~~~~~~~yl~~ilP~ll~~l~d~---~~~vre~al~Ale~~v~~~~~~i~p~l~~i~~~~~~s~~~~L~~~l~~~~~~~ 962 (1827)
.....+.+|++.+++.++..+.+. +..++..+++++..++...+....|++..+.. .+.+.+...+...
T Consensus 494 ~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~ 565 (876)
T d1qgra_ 494 PATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTL--------VIMERLQQVLQME 565 (876)
T ss_dssp CCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHH--------HHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHHH--------HHHHHHHHHHHHh
Confidence 124567889999999999998753 45689999999998888888887777654432 1111111100000
Q ss_pred hHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHHHHHhhhccc--------CCCC
Q psy14676 963 SEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLI--------DPSN 1034 (1827)
Q Consensus 963 ~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~e~Lg~L~~~--------~~~~ 1034 (1827)
. .. ... ........... ....++..+... ..+.
T Consensus 566 ~-------~~-~~~------------~~~~~~~~~~~-------------------~l~~~l~~~~~~~~~~~~~~~~~~ 606 (876)
T d1qgra_ 566 S-------HI-QST------------SDRIQFNDLQS-------------------LLCATLQNVLRKVQHQDALQISDV 606 (876)
T ss_dssp T-------SC-CST------------THHHHHHHHHH-------------------HHHHHHHHHHTTSCHHHHHTTHHH
T ss_pred h-------hh-cch------------hhhHHHHHHHH-------------------HHHHHHHHHHHHcchhhhhhhHHH
Confidence 0 00 000 00000000000 011111111111 1234
Q ss_pred chHHHHHHhc--cCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCc-hhhHHHHHHHHHH
Q psy14676 1035 LLPRLQESLK--SNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNF-YKITAEALLVLQQ 1111 (1827)
Q Consensus 1035 llP~L~~~L~--s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~-~~V~~eAl~~l~~ 1111 (1827)
+++.+.+.+. .++...++.++.+++.++...+..+.+| ++.++|.++..+++.. +.++..|+..++.
T Consensus 607 i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~----------l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~ 676 (876)
T d1qgra_ 607 VMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKY----------MEAFKPFLGIGLKNYAEYQVCLAAVGLVGD 676 (876)
T ss_dssp HHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGG----------HHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 6667777664 3456789999999999999989999998 9999999999997654 7799999999999
Q ss_pred HHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhh---
Q psy14676 1112 FVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNE--- 1188 (1827)
Q Consensus 1112 lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e--- 1188 (1827)
+.+... ..+.||+..+++.++..+.+.+.+.++|..++.|+|.++...|..+.+|++.++|.+...++..
T Consensus 677 l~~~~~-------~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~~~yl~~~l~~l~~~~~~~~~~ 749 (876)
T d1qgra_ 677 LCRALQ-------SNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDK 749 (876)
T ss_dssp HHHHHG-------GGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCT
T ss_pred HHHHhH-------HhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhcccCc
Confidence 987753 5788999999999999998666678899999999999999999999999999999998876421
Q ss_pred ---h-------hHHHHHHHHHHHhcCC------Cc---cccchhhhhhHhhhhhhh--cchhHHHHHHHHHHHHHHHHhC
Q psy14676 1189 ---I-------TRLTTVKALTKIAASP------LR---IDLRPILTDGIPILGSFL--RKNQRALKLSTLLLLDTLLVNY 1247 (1827)
Q Consensus 1189 ---~-------tR~~av~al~~ia~~~------~~---~dl~p~~~~~l~~L~~~L--rk~~r~lR~~al~aL~~L~~~~ 1247 (1827)
+ .|...+.+++.+..+. .. ..+.+++..++.-+.... ...+..++..++..++.++..+
T Consensus 750 ~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 829 (876)
T d1qgra_ 750 SDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAF 829 (876)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1 2666777776654311 01 113344443332221111 2234678888999999999988
Q ss_pred CCCcChHhH--HHHHHHhhhhcCCCChhHHHHH
Q psy14676 1248 PSAISTEML--NKVTVELAPLVSESDLHIAQLT 1278 (1827)
Q Consensus 1248 ~~~l~~~~~--~~ll~~L~~ll~d~D~~l~~~a 1278 (1827)
|....+... +.+..-|....++.|...+..|
T Consensus 830 g~~~~~~~~~~~~v~~ll~~~~~s~~~~~~~~a 862 (876)
T d1qgra_ 830 GKDVLKLVEARPMIHELLTEGRRSKTNKAKTLA 862 (876)
T ss_dssp CTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHhCCCHHHHHHH
Confidence 875432111 2222333344555666555543
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=7.8e-15 Score=181.55 Aligned_cols=300 Identities=16% Similarity=0.178 Sum_probs=218.3
Q ss_pred HHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhccCCCC-chhHHHHHHHhhhcCC--CCHHHHHHHHHHHHHHHHhh
Q psy14676 35 CRRITGKLSTAIEK-QEDVSVQLEALDILSDLLSRFGALLP-SFHFVILTALLPQLSS--PRQAVRKRTIVALSHLVMSC 110 (1827)
Q Consensus 35 ~~~L~P~Ll~~l~~-~~~~~v~~~al~iL~~l~~~~~~~l~-~~~~~il~~ll~~L~~--~~~~VRk~Ai~aL~~l~~~~ 110 (1827)
...++|.|++.+.+ ..++.++..++.+++.+++...+... .+...+++.+++.+.+ ++..||..|+.+++.+....
T Consensus 125 ~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~ 204 (458)
T d1ibrb_ 125 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 204 (458)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred CcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhh
Confidence 35688888888854 34677889999999999998876543 4677899999999975 56799999999999998776
Q ss_pred chh----HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHH-HhhcccCchHHHHHHHHHHHH
Q psy14676 111 NLQ----LYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLI-LKYSREEDDELREFCLQACEA 185 (1827)
Q Consensus 111 ~~~----~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l-~~~~~~~~delRe~al~ale~ 185 (1827)
.+. .....+..++..+.+++++.++..++++++.+++..++.+.+|+..++..+ .....++++++|..|+..+..
T Consensus 205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 284 (458)
T d1ibrb_ 205 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN 284 (458)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 543 223334444444555678899999999999999999999999987665544 455566788888666665555
Q ss_pred HHHhC----------------CCcc-----ccchHHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccCCCCCC
Q psy14676 186 FVQRC----------------PKEI-----TPHIQSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEEDGEDEG 244 (1827)
Q Consensus 186 ~~~~~----------------p~e~-----~p~l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d~dde~ 244 (1827)
+.... +... ..+++.++|.+.+.+.+. +
T Consensus 285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----------------------------~-- 333 (458)
T d1ibrb_ 285 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ-----------------------------D-- 333 (458)
T ss_dssp HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCC-----------------------------C--
T ss_pred HHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcc-----------------------------h--
Confidence 44321 0011 122334444443322110 0
Q ss_pred CCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCC
Q psy14676 245 EDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTP 324 (1827)
Q Consensus 245 e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~ 324 (1827)
..++|..|.+|++|+.++..++...++ .+++.++|.+.+.+++.+|.+|.+++.+++.+++...
T Consensus 334 ------~~~~~~~~~~~~~a~~~l~~l~~~~~~---~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~------- 397 (458)
T d1ibrb_ 334 ------ENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE------- 397 (458)
T ss_dssp ------SSCCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-------
T ss_pred ------hhhccccccHHHHHHHHHHHHHHhccH---hhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC-------
Confidence 011233478999999999999998875 4577889999999999999999999999998873211
Q ss_pred CCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccc--cCchhhHHHHHH
Q psy14676 325 SDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCL--APSLPALIPDVT 393 (1827)
Q Consensus 325 ~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l--~~~l~~Llp~i~ 393 (1827)
...+.+.++.++|.+.+.++|++++||.+++..++.++..+|... ..|++.+++.++
T Consensus 398 ------------~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~~~~~~l~~ll~~ll 456 (458)
T d1ibrb_ 398 ------------PSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 456 (458)
T ss_dssp ------------TTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred ------------HhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHh
Confidence 123466788999999999999999999999999999999998743 456666666543
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=8.4e-13 Score=162.92 Aligned_cols=400 Identities=12% Similarity=0.115 Sum_probs=279.0
Q ss_pred CCchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhcc----------
Q psy14676 2 VSDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQ-EDVSVQLEALDILSDLLSRFG---------- 70 (1827)
Q Consensus 2 ~~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~-~~~~v~~~al~iL~~l~~~~~---------- 70 (1827)
.|.+.+.|.-+.-.|+....+= ....++.|+..+.++ .+..+|..|.-.|...+....
T Consensus 10 ~s~d~~~r~~A~~~L~~~~~~~-----------~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~ 78 (458)
T d1ibrb_ 10 VSPDRLELEAAQKFLERAAVEN-----------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 78 (458)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred hCcCHHHHHHHHHHHHHHHhcC-----------chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhh
Confidence 5677788888888888887542 233556777777443 367899888887776664321
Q ss_pred -CCCCc-hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHHHH
Q psy14676 71 -ALLPS-FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSC-NLQLYTKLIDFLLEGLTT-NKSTSTNRTYIQCFAAIC 146 (1827)
Q Consensus 71 -~~l~~-~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~-~~~~~~~l~~~ll~~L~~-~~~~~~r~~ai~~l~~la 146 (1827)
..+.+ ....+.+.+++.+.++.+.+| .++.+++.++... +...+..+++.+++.+.+ ......++.++.+++.++
T Consensus 79 ~~~l~~~~~~~i~~~ll~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 157 (458)
T d1ibrb_ 79 WLAIDANARREVKNYVLQTLGTETYRPS-SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 157 (458)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCCCSSSC-SHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHhccCCCcHHHH-HHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 12222 345788888888888766555 4566777766653 344566777888887754 445678889999999999
Q ss_pred HHhc-hhhHHhHHHHHHHHHhhccc--CchHHHHHHHHHHHHHHHhCCC--ccccchHHHHHHHHHHhccCCCCCccccc
Q psy14676 147 RQAG-HRFAEHIERVMPLILKYSRE--EDDELREFCLQACEAFVQRCPK--EITPHIQSITELCLTYITYDPNYNYEDEE 221 (1827)
Q Consensus 147 ~~~~-~~~~p~l~~i~p~l~~~~~~--~~delRe~al~ale~~~~~~p~--e~~p~l~~ii~~ll~~l~~dpn~~~~ddd 221 (1827)
.... ..+.+|...+++.+.+.+.. ...++|..|+.++..+....+. ....+.+.+.+.+...+..
T Consensus 158 ~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------- 227 (458)
T d1ibrb_ 158 QDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC---------- 227 (458)
T ss_dssp HHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC----------
T ss_pred hhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcC----------
Confidence 8764 55677899999999988864 3568898888777777655433 2233444555555544311
Q ss_pred ccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhh-HHHHhhcCCCCHh
Q psy14676 222 EGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVS-PPLIARFKEREEN 300 (1827)
Q Consensus 222 ~~~~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~-p~L~~~l~e~ee~ 300 (1827)
.+|++|+.+.++|..++...++.+.+++..+. +.+...+++..++
T Consensus 228 ----------------------------------~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 273 (458)
T d1ibrb_ 228 ----------------------------------PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDE 273 (458)
T ss_dssp ----------------------------------SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHH
T ss_pred ----------------------------------CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 13689999999999999999988887766554 4455666888999
Q ss_pred HHHHHHHHHHHHHhhhcccCC-CCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhc-------cCCHhHHHHHHHHHHH
Q psy14676 301 VKSDIFHAYMALLKGTRTFSP-LTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLR-------EKSIRTRQDCLALLRE 372 (1827)
Q Consensus 301 VR~aa~~al~~ll~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~-------d~~~~vR~a~~~ll~~ 372 (1827)
+|..++..+..+.+....... ......................++.+++.+...+. |....+|.++...+..
T Consensus 274 ~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 353 (458)
T d1ibrb_ 274 VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLML 353 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHH
Confidence 999999998888654321000 00000000000011112344556667777766653 2334689999999999
Q ss_pred HHHhCcccccCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHH
Q psy14676 373 LVQTLPGCLAPSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAII 452 (1827)
Q Consensus 373 L~~vl~~~l~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~ 452 (1827)
++..+|. +.++.++|.+.+.++ +.+|++|.+|+.+++.++
T Consensus 354 l~~~~~~---~~~~~l~~~i~~~l~-------------------------------------s~~~~~r~aal~~l~~i~ 393 (458)
T d1ibrb_ 354 LATCCED---DIVPHVLPFIKEHIK-------------------------------------NPDWRYRDAAVMAFGCIL 393 (458)
T ss_dssp HHHHTTT---THHHHHHHHHHHHTT-------------------------------------CSSHHHHHHHHHHHHHTS
T ss_pred HHHhccH---hhhhHHHHHHHHHhc-------------------------------------CCCHHHHHHHHHHHHHHH
Confidence 9998875 346788888888773 236999999999999999
Q ss_pred HHhh-hhhhhhHHhhhhhHHHhhcchhhhhHHHHHHHHHHHHhhcc
Q psy14676 453 ATRR-DLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLKGTR 497 (1827)
Q Consensus 453 ~~~~-~~f~~~~~~l~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g 497 (1827)
...+ ..+.+|++.++|.+++.++|.++.||.+|..+++++.+.++
T Consensus 394 ~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~ 439 (458)
T d1ibrb_ 394 EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 439 (458)
T ss_dssp SSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred HhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhh
Confidence 6554 77889999999999999999999999999999999998765
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.39 E-value=1.5e-09 Score=147.26 Aligned_cols=490 Identities=10% Similarity=0.077 Sum_probs=270.9
Q ss_pred hhHHHHHHHHHHHHHhccccchhhhhhhHHHHHHhhcc--cchHHHHHHHHHHHHHHhhCCCc-------cccccccccc
Q psy14676 871 STNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYSRE--EDDELREFCLQACEAFVQRCPKE-------ITPHIQSIGR 941 (1827)
Q Consensus 871 ~vr~~~l~~l~~L~~~~~~~~~~yl~~ilP~ll~~l~d--~~~~vre~al~Ale~~v~~~~~~-------i~p~l~~i~~ 941 (1827)
..+..++..+..+.+.+++.+.+|++.+++.+++.+.. ........+.+++++|...+... ..+++..+..
T Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~i~~ 340 (959)
T d1wa5c_ 261 KVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITE 340 (959)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH
Confidence 57888999999999999999999999999999887653 11222233455666654432211 1133322221
Q ss_pred cCCcchhhhhHHHHHhhcCCChHhHhhhhhcccchhhHhhhhcccccchhhhhhhhHHHHHHHHHhhhhccccchhhHHH
Q psy14676 942 HTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVA 1021 (1827)
Q Consensus 942 ~~~~s~~~~L~~~l~~~~~~~~e~~r~~~~~~lg~~~~~i~Wk~~~~~~~~~l~~~~p~ll~~L~~~l~~~e~~vR~~a~ 1021 (1827)
.+++..+.-+.++... |.... ..+. ..-. -.+.....|..+.
T Consensus 341 -----------~li~~~~~~~~~d~e~--------------~~~dp-------~~~~----~~~~--~~~~~~~~r~~a~ 382 (959)
T d1wa5c_ 341 -----------QIILPNVTLREEDVEL--------------FEDDP-------IEYI----RRDL--EGSDTDTRRRACT 382 (959)
T ss_dssp -----------HTHHHHHSCCGGGTTT--------------TTTCH-------HHHH----HHHH--HC----CHHHHHH
T ss_pred -----------HHHHHHhcCCHHHHHH--------------Hhcch-------HHHH----HHHh--hhcccccHHHHHH
Confidence 2222222211111111 11000 0000 0000 0112234555566
Q ss_pred HHHhhhcccCCCCchHH----HHHHh------ccCChhhHHHHHHHHHHHHHhccc--cccccccchhhhhhhhhhhhHH
Q psy14676 1022 ECLGKLTLIDPSNLLPR----LQESL------KSNSALMRTTHQSNQTFNVIIQRN--DIHNHNEETSFIYSFYYFLLSP 1089 (1827)
Q Consensus 1022 e~Lg~L~~~~~~~llP~----L~~~L------~s~~~~~R~~a~~~L~~l~~~~~~--~l~~~~~~~~~~~~~l~~Lip~ 1089 (1827)
.++..++...++.+.+. +.+.+ .+.+|..|.+++.+++.+...... ...........+.+++...+.+
T Consensus 383 ~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~ 462 (959)
T d1wa5c_ 383 DFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP 462 (959)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHH
Confidence 66666666555444443 33333 235688999999999877543221 1111111112233445455555
Q ss_pred HHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhh--
Q psy14676 1090 VIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLG-- 1167 (1827)
Q Consensus 1090 l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g-- 1167 (1827)
.+....++.+.+|+.++..++.+...+ ..+++..+++.++..+. |.+..||..|+.|+..++....
T Consensus 463 ~l~~~~~~~~~lr~~~~~~i~~~~~~~----------~~~~~~~~~~~l~~~L~--~~~~~V~~~a~~al~~~~~~~~~~ 530 (959)
T d1wa5c_ 463 DLTSNNIPHIILRVDAIKYIYTFRNQL----------TKAQLIELMPILATFLQ--TDEYVVYTYAAITIEKILTIRESN 530 (959)
T ss_dssp HHHCSSCSCHHHHHHHHHHHHHTGGGS----------CHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTCBSCS
T ss_pred HHccCCCchHHHHHHHHHHHHHHHhhc----------cHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHHhhccc
Confidence 555566777889999999999987543 23678899999999887 7789999999999999987542
Q ss_pred ---------hhhhhhhhhhHHHHHHhhhhhhh-------HHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcc---h
Q psy14676 1168 ---------DYLKSELPVCLPILLDRLRNEIT-------RLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRK---N 1228 (1827)
Q Consensus 1168 ---------~~l~~~l~~lL~~Ll~~L~~e~t-------R~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk---~ 1228 (1827)
+.+.|+++.++..++..+..... +....++++.+.... ...+.|+...+++.+...+.+ +
T Consensus 531 ~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~-~~~~~~~~~~i~~~l~~~~~~~~~~ 609 (959)
T d1wa5c_ 531 TSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTS-EDSIQPLFPQLLAQFIEIVTIMAKN 609 (959)
T ss_dssp SSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHH-TTTTGGGHHHHHHHHHHHHHHHTTS
T ss_pred ccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34667888888888877743221 344777777776532 234567777777766554431 1
Q ss_pred --hHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcc
Q psy14676 1229 --QRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIG 1306 (1827)
Q Consensus 1229 --~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG 1306 (1827)
+...+...++++..++...+...-......++|.+...+.....+...-++.++..+....+.... .
T Consensus 610 ~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~--------- 678 (959)
T d1wa5c_ 610 PSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPE--S--------- 678 (959)
T ss_dssp CCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCT--T---------
T ss_pred ccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCCccH--H---------
Confidence 345777888999999886554333345566777777777666667778888888888776553111 0
Q ss_pred cccCCCchhhHHHHHHHhcCCCCHhHHHHHHH------HHhhhhhhhhhhhHHHHHHhhhcCchhhHHHHHHHHHHHhhc
Q psy14676 1307 RHTDLTSVADLKQVILNAFTPTSEEVKSAASY------TLGSIAVGNLQQYVPFVLKEIENQPKRQYLLLHSLKEIISWQ 1380 (1827)
Q Consensus 1307 ~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~------aLG~i~~~~l~~~LP~Il~~i~~~~~~q~~~l~aL~Eii~~~ 1380 (1827)
...+.+.++..+.....+....... ..|.-...+....+..+...+......+ ....-+..++...
T Consensus 679 -------~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~ll~~ii~~~ 750 (959)
T d1wa5c_ 679 -------IKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAYEV-HGFDLLEHIMLLI 750 (959)
T ss_dssp -------TGGGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTTTHH-HHHHHHHHHHHHS
T ss_pred -------HHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHhCHHhhcchHHHHHHHHHHHCCCcchH-HHHHHHHHHHHHC
Confidence 1112222221111111111111111 1122122223334444434333221122 2233344454422
Q ss_pred cccccchhhhhchHHHHHHHHhhhhcCCc-hhHHHHHHHHHHHhhcc-CCCcchHHH
Q psy14676 1381 STSTSGVAQLQQFVPAIWAQLFLHCECQE-EGTRNVVAECLGKLTLI-DPSNLLPRL 1435 (1827)
Q Consensus 1381 ~~s~~g~~~L~~~~~~i~~~L~~~~~~~~-e~vR~~aAecLGkL~~~-~p~~~lP~L 1435 (1827)
++..+.+|++.++..+++.+...+ ....+...-+++.++.. +|..++..+
T Consensus 751 -----~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 802 (959)
T d1wa5c_ 751 -----DMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFI 802 (959)
T ss_dssp -----CHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred -----chhhhHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 245577899999999999876443 44455566778888763 454444433
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.33 E-value=7.4e-09 Score=140.24 Aligned_cols=504 Identities=13% Similarity=0.085 Sum_probs=279.6
Q ss_pred hHHHHHHHHHHHHHHHhhCC--CC-ChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCchhHHHH
Q psy14676 5 KEQLRDISSIGLKTVISELP--LG-SNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPSFHFVIL 81 (1827)
Q Consensus 5 ~~~~Rdi~~~~Lktvi~~lp--~~-~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~~~~~il 81 (1827)
..++|-.+++.||..|..-= .. ...........|-..|++.+.+ ++..+|.....+++.++..-.| ..+++++
T Consensus 50 ~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k~~Ik~~ll~~l~~-~~~~ir~~l~~~i~~I~~~d~p---~~Wp~ll 125 (959)
T d1wa5c_ 50 PLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMIS-LPNNLQVQIGEAISSIADSDFP---DRWPTLL 125 (959)
T ss_dssp CHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHST---TTCTTHH
T ss_pred CHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHhCc---cccHHHH
Confidence 35799999999999987531 10 0112233344444555555543 3678999999999999887554 3678899
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHhhch-----h-------HHHHHHHHHH-------Hh-----------------
Q psy14676 82 TALLPQLSSPRQAVRKRTIVALSHLVMSCNL-----Q-------LYTKLIDFLL-------EG----------------- 125 (1827)
Q Consensus 82 ~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~-----~-------~~~~l~~~ll-------~~----------------- 125 (1827)
+.+++.++++++..+..+..++..+++.... . .+..+.+.+. ..
T Consensus 126 ~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 205 (959)
T d1wa5c_ 126 SDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDV 205 (959)
T ss_dssp HHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 9999999998888888899998888754321 0 0000100000 00
Q ss_pred ----------------------------------ccC------CC--------CHHHHHHHHHHHHHHHHHhchhhHHhH
Q psy14676 126 ----------------------------------LTT------NK--------STSTNRTYIQCFAAICRQAGHRFAEHI 157 (1827)
Q Consensus 126 ----------------------------------L~~------~~--------~~~~r~~ai~~l~~la~~~~~~~~p~l 157 (1827)
+.. .. ....+..++.++..+.+..++.+.||+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 285 (959)
T d1wa5c_ 206 LLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMI 285 (959)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhcccccccCchhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 000 00 013566677788888888888899999
Q ss_pred HHHHHHHHhhcc-----cCchHHHHHHHHHHHHHHHhCCC-----c--cccchHHHHH-HHHHHhccCCCCCcccccccC
Q psy14676 158 ERVMPLILKYSR-----EEDDELREFCLQACEAFVQRCPK-----E--ITPHIQSITE-LCLTYITYDPNYNYEDEEEGL 224 (1827)
Q Consensus 158 ~~i~p~l~~~~~-----~~~delRe~al~ale~~~~~~p~-----e--~~p~l~~ii~-~ll~~l~~dpn~~~~ddd~~~ 224 (1827)
+.+++.+.+.+. ...+++ +.++++.|...+.. . ..+++..++. .+..++.+.+ +|.+.|
T Consensus 286 ~~~~~~~~~~l~~~~~~~~~~~~---~~~~l~~l~~~~~~~~~~~~~~~~~~l~~i~~~li~~~~~~~~----~d~e~~- 357 (959)
T d1wa5c_ 286 NEFIQITWNLLTSISNQPKYDIL---VSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLRE----EDVELF- 357 (959)
T ss_dssp HHHHHHHHHHHHHCCSCTTSHHH---HHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCG----GGTTTT-
T ss_pred HHHHHHHHHHHHHHhcccccHHH---HHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCH----HHHHHH-
Confidence 999988877653 234444 44555555443321 1 2356666664 4445665532 111111
Q ss_pred CCCCCCCCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhh-hHHhhhHHHHhhc--CCCCHhH
Q psy14676 225 GGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGD-MYRLVSPPLIARF--KEREENV 301 (1827)
Q Consensus 225 ~~~~~~~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~-~~~~v~p~L~~~l--~e~ee~V 301 (1827)
+++. +++. . .+++++..|..|++|..++..+...+++...+ +.+.+...+.+.. .+.+|..
T Consensus 358 ---------~~dp----~~~~--~-~~~~~~~~~~~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 421 (959)
T d1wa5c_ 358 ---------EDDP----IEYI--R-RDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKF 421 (959)
T ss_dssp ---------TTCH----HHHH--H-HHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHH
T ss_pred ---------hcch----HHHH--H-HHhhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHH
Confidence 0000 0000 0 01122345789999999999999887753322 2233333333322 3568999
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccc
Q psy14676 302 KSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCL 381 (1827)
Q Consensus 302 R~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l 381 (1827)
|.+++.+++++.......... .. . ......+.+.+...+...++.-.+..+.+|..++.+++......+
T Consensus 422 ~e~~~~~~~al~~~~~~~~~~----~~--~--~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~--- 490 (959)
T d1wa5c_ 422 KDLYIYLFTALAINGNITNAG----VS--S--TNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--- 490 (959)
T ss_dssp HHHHHHHHHHHHBSSCCBTTB----CC--C--BCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---
T ss_pred HHHHHHHHHHHHhhhhhhhhh----hh--c--ccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhcc---
Confidence 999999999887422111000 00 0 000011222222222222333345667788877777777766654
Q ss_pred cCchhhHHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh-----
Q psy14676 382 APSLPALIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR----- 456 (1827)
Q Consensus 382 ~~~l~~Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~----- 456 (1827)
.++++.+++.+...|++ .+-.||..|+.++..++....
T Consensus 491 ~~~~~~~~~~l~~~L~~-------------------------------------~~~~V~~~a~~al~~~~~~~~~~~~~ 533 (959)
T d1wa5c_ 491 KAQLIELMPILATFLQT-------------------------------------DEYVVYTYAAITIEKILTIRESNTSP 533 (959)
T ss_dssp HHHHHHHHHHHHHHTTC-------------------------------------SCHHHHHHHHHHHHHHTTCBSCSSSC
T ss_pred HHHHHHHHHHHHHHhCC-------------------------------------CchhHHHHHHHHHHHHHHhhcccccc
Confidence 35678899999998832 235699999999999986432
Q ss_pred ------hhhhhhHHhhhhhHHHhhcchhh-----hhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhh
Q psy14676 457 ------DLIGDMYRLVSPPLIARFKEREE-----NVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVP 525 (1827)
Q Consensus 457 ------~~f~~~~~~l~~~L~~~~~d~~~-----~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 525 (1827)
+.+.||++.++..++..+.+... ..+.....++..+++.++- .+.+.+.
T Consensus 534 ~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~--------------------~~~~~~~ 593 (959)
T d1wa5c_ 534 AFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSED--------------------SIQPLFP 593 (959)
T ss_dssp CBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTT--------------------TTGGGHH
T ss_pred hhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHH
Confidence 45778999888888887755432 2233466666676666551 0122223
Q ss_pred HHHHHHHHHhhhhhhhhHHhHHHHHHHhhcCC-CccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHH
Q psy14676 526 SLVKALQCQLREKSIRTRQDCLALLRELMTSS-DKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQ 604 (1827)
Q Consensus 526 ~~~~~l~~~l~~~~~~~~~~~l~~l~~~~~d~-dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~ 604 (1827)
.++..+...+. ...+++ ++.+.....+.+...+....-.........++|.+..+++....+..
T Consensus 594 ~i~~~l~~~~~---------------~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~~~ 658 (959)
T d1wa5c_ 594 QLLAQFIEIVT---------------IMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFI 658 (959)
T ss_dssp HHHHHHHHHHH---------------HHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHH---------------HHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccchhHH
Confidence 33333332211 111111 22222222222222222100011123557788888888887777777
Q ss_pred HHHHHhhhhHHHHhh
Q psy14676 605 NLAVKCLGPLFKALT 619 (1827)
Q Consensus 605 ~~A~~~lg~l~~~~~ 619 (1827)
..+...+..+++...
T Consensus 659 ~~~~~l~~~~~~~~~ 673 (959)
T d1wa5c_ 659 PYVFQIIAFVVEQSA 673 (959)
T ss_dssp HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhCC
Confidence 788887777765544
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=1.5e-08 Score=127.75 Aligned_cols=448 Identities=13% Similarity=0.102 Sum_probs=279.8
Q ss_pred HHHhhhhccccchhhHHHHHHhhhcccC--------CCCchHHHHHHhcc-CChhhHHHHHHHHHHHHHhcccc--cccc
Q psy14676 1004 QLFLHCECQEEGTRNVVAECLGKLTLID--------PSNLLPRLQESLKS-NSALMRTTHQSNQTFNVIIQRND--IHNH 1072 (1827)
Q Consensus 1004 ~L~~~l~~~e~~vR~~a~e~Lg~L~~~~--------~~~llP~L~~~L~s-~~~~~R~~a~~~L~~l~~~~~~~--l~~~ 1072 (1827)
.|...+++++..+|..|+.+|+.++... ...++|.+.+.|+. .+...+..++.+|..+..+.... +-.
T Consensus 21 ~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~- 99 (529)
T d1jdha_ 21 ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFK- 99 (529)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHH-
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHH-
Confidence 3444457788889999999999997552 23579999999965 56789999999998775433211 111
Q ss_pred ccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchh--HHHHHHHHHHHHhhcCCCHH
Q psy14676 1073 NEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPF--TSDIYQCTLVRLKAADIDQE 1150 (1827)
Q Consensus 1073 ~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~--l~~l~~~ll~~L~~~D~d~e 1150 (1827)
...+|.++..+++++++++..|+++++.+...- ...+.. -...++.++..+. +.+.+
T Consensus 100 -----------~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~--------~~~~~~~~~~g~i~~Lv~lL~--~~~~~ 158 (529)
T d1jdha_ 100 -----------SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ--------EGAKMAVRLAGGLQKMVALLN--KTNVK 158 (529)
T ss_dssp -----------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC--------TTHHHHHHHHTHHHHHHHGGG--CCCHH
T ss_pred -----------CCCHHHHHHHhCCCCHHHHHHHHHHHHHhhccc--------chhhhHHHhcCCchHHHHHHH--ccChH
Confidence 145789999999999999999999999887531 111111 1234566666665 67899
Q ss_pred HHHHHHHHHHHHHHHhhhh-hhhhhhhhHHHHHHhhhh---hhhHHHHHHHHHHHhcCCCccccchhh-hhhHhhhhhhh
Q psy14676 1151 VKERAISCMGQIICNLGDY-LKSELPVCLPILLDRLRN---EITRLTTVKALTKIAASPLRIDLRPIL-TDGIPILGSFL 1225 (1827)
Q Consensus 1151 Vre~Ai~alg~l~~~~g~~-l~~~l~~lL~~Ll~~L~~---e~tR~~av~al~~ia~~~~~~dl~p~~-~~~l~~L~~~L 1225 (1827)
+++.|..+++.+...-.+. ..-.-...++.++..++. +..+..++.++..++..... -..++ ...++.+..++
T Consensus 159 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~--~~~~~~~g~~~~L~~ll 236 (529)
T d1jdha_ 159 FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN--KPAIVEAGGMQALGLHL 236 (529)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTH--HHHHHHTTHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccc--cchhhhhhhhhhHHHHh
Confidence 9999999999987432211 011122345666666643 33477888888887653211 11222 34578888888
Q ss_pred cchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhc
Q psy14676 1226 RKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQI 1305 (1827)
Q Consensus 1226 rk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgei 1305 (1827)
...+..++..++.++..+......... ...+++.|..++.++|..++..++.+|+.++...+.. ...+.+
T Consensus 237 ~~~~~~~~~~a~~~l~~ls~~~~~~~~---~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~------~~~i~~- 306 (529)
T d1jdha_ 237 TDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN------KMMVCQ- 306 (529)
T ss_dssp TSSCHHHHHHHHHHHHHHHTTCTTCSC---CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHH------HHHHHH-
T ss_pred cccchhhhhhhhhHHHhccccccchhh---hhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHH------HHHHHH-
Confidence 888888899999999887654433322 2457788888999999999999999998876532210 000000
Q ss_pred ccccCCCchhhHHHHHHHhc--CCCCHhHHHHHHHHHhhhhhhhh-----------hhhHHHHHHhhhcCc--hhhHHHH
Q psy14676 1306 GRHTDLTSVADLKQVILNAF--TPTSEEVKSAASYTLGSIAVGNL-----------QQYVPFVLKEIENQP--KRQYLLL 1370 (1827)
Q Consensus 1306 G~~~~~~~~~~l~~~~l~~~--~~~s~eVr~aAa~aLG~i~~~~l-----------~~~LP~Il~~i~~~~--~~q~~~l 1370 (1827)
...++.++..+ .+++++++.+|+.+|++++.+.- ...+|.+++.+..+. ..+....
T Consensus 307 ---------~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~ 377 (529)
T d1jdha_ 307 ---------VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 377 (529)
T ss_dssp ---------TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHH
T ss_pred ---------hhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHH
Confidence 12333344433 25578899999999988653321 124667777765422 1222333
Q ss_pred HHHHHHHhhccccccchhhhh--chHHHHHHHHhhhhc------------------CCchhHHHHHHHHHHHhhccC---
Q psy14676 1371 HSLKEIISWQSTSTSGVAQLQ--QFVPAIWAQLFLHCE------------------CQEEGTRNVVAECLGKLTLID--- 1427 (1827)
Q Consensus 1371 ~aL~Eii~~~~~s~~g~~~L~--~~~~~i~~~L~~~~~------------------~~~e~vR~~aAecLGkL~~~~--- 1427 (1827)
++++.+.. +......+. ..++.+...+..... -..++++..++.+++.++...
T Consensus 378 ~~l~~l~~----~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r 453 (529)
T d1jdha_ 378 GLIRNLAL----CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNR 453 (529)
T ss_dssp HHHHHHTT----SGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHhhcch----hhhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHH
Confidence 44443322 100111121 133444444432110 011344555556666665421
Q ss_pred ----CCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcccccChhHHHHHHHHHHHh
Q psy14676 1428 ----PSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRL 1503 (1827)
Q Consensus 1428 ----p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~~~~~~~~~~~l~~~ll~~ 1503 (1827)
-...+|.|.+++.++++.+|..++.++..+..+. .-+ ..+ .....++.+.++
T Consensus 454 ~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~------~~~--------~~i----------~~~g~~~~L~~L 509 (529)
T d1jdha_ 454 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK------EAA--------EAI----------EAEGATAPLTEL 509 (529)
T ss_dssp HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH------HHH--------HHH----------HHTTCHHHHHHG
T ss_pred HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCh------hhH--------HHH----------HHCCCHHHHHHH
Confidence 1346788999999999999999999998875431 111 000 112345889999
Q ss_pred hcCCchHHHHHHHHHhhhh
Q psy14676 1504 LEDKNGEVQNLAVKCLGPL 1522 (1827)
Q Consensus 1504 l~D~~~~Vr~~a~~~Lg~L 1522 (1827)
++++++.||..|+.+|..|
T Consensus 510 l~s~n~~v~~~a~~aL~~l 528 (529)
T d1jdha_ 510 LHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp GGCSSHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999876
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.10 E-value=7.1e-09 Score=126.75 Aligned_cols=398 Identities=11% Similarity=0.100 Sum_probs=250.5
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh----HHH-HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHH
Q psy14676 81 LTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ----LYT-KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAE 155 (1827)
Q Consensus 81 l~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~----~~~-~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p 155 (1827)
++.++..|.++++.++..|+.++..+...-.+. ... ..++.|++.|.+.+++.+|..++.+|..+|....+.-..
T Consensus 15 i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~ 94 (434)
T d1q1sc_ 15 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 94 (434)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhH
Confidence 445567899999999999999999887544432 221 257788888876666789999999999998654432221
Q ss_pred h-HHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccch--HHHHHHHHHHhccCCCCCcccccccCCCCCCCCC
Q psy14676 156 H-IERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHI--QSITELCLTYITYDPNYNYEDEEEGLGGEGGGEG 232 (1827)
Q Consensus 156 ~-l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l--~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~ 232 (1827)
. -..++|.+++.++.+++++++.|+.++..++...+. .+.++ ...++.++..+.....
T Consensus 95 i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~-~~~~i~~~~~~~~l~~~l~~~~~------------------ 155 (434)
T d1q1sc_ 95 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA-FRDLVIKHGAIDPLLALLAVPDL------------------ 155 (434)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHHHHHHHTCSSCG------------------
T ss_pred hhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchH-HHHHHHHhhhhhHHHHHHHhccc------------------
Confidence 1 246889999999989999999999888777643321 11111 1244555555432100
Q ss_pred CCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCC-chhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHH
Q psy14676 233 MDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRD-LIGDMYRLVSPPLIARFKEREENVKSDIFHAYMA 311 (1827)
Q Consensus 233 ~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~-~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ 311 (1827)
.......-+.++.++..+....+. ........++|.|...+++.+++++..++.++..
T Consensus 156 ---------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~ 214 (434)
T d1q1sc_ 156 ---------------------STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 214 (434)
T ss_dssp ---------------------GGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ---------------------ccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcc
Confidence 000112223345566655543322 1223567789999999999999999999999988
Q ss_pred HHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCc-hhhHHH
Q psy14676 312 LLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPS-LPALIP 390 (1827)
Q Consensus 312 ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~-l~~Llp 390 (1827)
+..... .....+ .-+.+++.+.+.+++++++++..++..++.++..-+...... -..+++
T Consensus 215 l~~~~~-----------------~~~~~~--~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~ 275 (434)
T d1q1sc_ 215 LTDGPN-----------------ERIEMV--VKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA 275 (434)
T ss_dssp HTSSCH-----------------HHHHHH--HTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG
T ss_pred cchhhh-----------------hhHHHH--hhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccc
Confidence 763210 001111 112356677778888999999999988887764322110000 012334
Q ss_pred HHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhH-Hhhhhh
Q psy14676 391 DVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMY-RLVSPP 469 (1827)
Q Consensus 391 ~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~-~~l~~~ 469 (1827)
.+..++.+ ..-.+|..|+.++..++..........+ ..++|.
T Consensus 276 ~l~~ll~~-------------------------------------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~ 318 (434)
T d1q1sc_ 276 VFPSLLTN-------------------------------------PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPF 318 (434)
T ss_dssp GHHHHTTC-------------------------------------SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHH
T ss_pred hHHHhhcc-------------------------------------cchhhhHHHHHHHhhhccccchhHHHHhhhhhHHH
Confidence 45555521 1123889999999999865443333222 237788
Q ss_pred HHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhhhHHhHHHH
Q psy14676 470 LIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIRTRQDCLAL 549 (1827)
Q Consensus 470 L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~ 549 (1827)
++..+.+..+.+|..|...+..++..... ..+..+ ...++++.
T Consensus 319 li~~l~~~~~~v~~~a~~~l~nl~~~~~~---------------------------~~~~~l----------~~~~~i~~ 361 (434)
T d1q1sc_ 319 LVGVLSKADFKTQKEAAWAITNYTSGGTV---------------------------EQIVYL----------VHCGIIEP 361 (434)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHSCH---------------------------HHHHHH----------HHTTCHHH
T ss_pred HHHHHhccChHHHHHHHHHHHHHHhcCCH---------------------------HHHHHH----------HHCCcHHH
Confidence 88888888899999999888888754320 000111 12256788
Q ss_pred HHHhhcCCCccccccchHHHHHHHhhhc-cccchhhHHH-----HHHHHHHHhhcchhhHHHHHHHhh
Q psy14676 550 LRELMTSSDKDFRFMATNDLMSELQKDS-IKLDDDSERK-----VVKMLLRLLEDKNGEVQNLAVKCL 611 (1827)
Q Consensus 550 l~~~~~d~dpd~Rf~a~~dl~~~~~~~~-~~~d~~~~~~-----i~~~l~~~l~D~~~eV~~~A~~~l 611 (1827)
+.+.++..|++++..++..+...++-.. ...+...... .++.|..+.+.++.+|+..|.+.|
T Consensus 362 L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il 429 (434)
T d1q1sc_ 362 LMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 429 (434)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8888888899999888887777664311 1111112111 255666777888999999988765
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.06 E-value=6.3e-09 Score=127.22 Aligned_cols=386 Identities=12% Similarity=0.121 Sum_probs=242.5
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHH
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVIL 81 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il 81 (1827)
|++.+.+--++.+|+.+.+.-+.+. ...-+..-++|.|++.+.+.+++.+|..|+.+|..++..-...... .....+
T Consensus 24 s~~~~~~~~a~~~l~~l~s~~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i 101 (434)
T d1q1sc_ 24 SNNLESQLQATQAARKLLSREKQPP--IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAI 101 (434)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSSCCC--HHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCch--HHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccch
Confidence 5666677777888887765433321 2222334589999999976667899999999999997543221111 123578
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh---HHH-HHHHHHHHhccCCCC----HHHHHHHHHHHHHHHHHhc-hh
Q psy14676 82 TALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ---LYT-KLIDFLLEGLTTNKS----TSTNRTYIQCFAAICRQAG-HR 152 (1827)
Q Consensus 82 ~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~---~~~-~l~~~ll~~L~~~~~----~~~r~~ai~~l~~la~~~~-~~ 152 (1827)
+.++..|.++++.+|+.|+.+|++++..-+.. ... ..++.++..+..... ....+.+..++..+++... ..
T Consensus 102 ~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (434)
T d1q1sc_ 102 PAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP 181 (434)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCC
T ss_pred hhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccc
Confidence 88999999999999999999999998654321 111 245566666644221 2334555566666665432 22
Q ss_pred hHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccc--hHHHHHHHHHHhccCCCCCcccccccCCCCCCC
Q psy14676 153 FAEHIERVMPLILKYSREEDDELREFCLQACEAFVQRCPKEITPH--IQSITELCLTYITYDPNYNYEDEEEGLGGEGGG 230 (1827)
Q Consensus 153 ~~p~l~~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~--l~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~ 230 (1827)
...+...++|.+...++.+++++++.|+.++..+... +.+..+. -..+++.+.+++..
T Consensus 182 ~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~Lv~ll~~------------------- 241 (434)
T d1q1sc_ 182 PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGA------------------- 241 (434)
T ss_dssp CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHHHTTTCHHHHHHHHTC-------------------
T ss_pred hhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchh-hhhhHHHHhhcccchhccccccc-------------------
Confidence 2345677899999988888999998888877666432 2221111 12345555555422
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhH-HhhhHHHHhhcCCCCHhHHHHHHHHH
Q psy14676 231 EGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMY-RLVSPPLIARFKEREENVKSDIFHAY 309 (1827)
Q Consensus 231 ~~~d~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~-~~v~p~L~~~l~e~ee~VR~aa~~al 309 (1827)
..++++..+.++|..++...++....++ ..+++.+...+++.+.+||..++.++
T Consensus 242 -------------------------~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L 296 (434)
T d1q1sc_ 242 -------------------------TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 296 (434)
T ss_dssp -------------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHH
T ss_pred -------------------------chhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHH
Confidence 0247899999999988754333222222 35677888889999999999999999
Q ss_pred HHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCch--hh
Q psy14676 310 MALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSL--PA 387 (1827)
Q Consensus 310 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l--~~ 387 (1827)
+.++.... .....+.. ..+++.+.+.+.+.++++|..|...+..+..........++ ..
T Consensus 297 ~~l~~~~~-----------------~~~~~i~~--~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~ 357 (434)
T d1q1sc_ 297 SNITAGRQ-----------------DQIQQVVN--HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 357 (434)
T ss_dssp HHHTTSCH-----------------HHHHHHHH--TTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT
T ss_pred hhhccccc-----------------hhHHHHhh--hhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCC
Confidence 98874211 11122221 12567777788889999999888888888776543111111 13
Q ss_pred HHHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh-----hhhhhh
Q psy14676 388 LIPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR-----DLIGDM 462 (1827)
Q Consensus 388 Llp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~-----~~f~~~ 462 (1827)
+++.+.+.++. ..+.++..++.++..++.... +.+...
T Consensus 358 ~i~~L~~ll~~-------------------------------------~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~ 400 (434)
T d1q1sc_ 358 IIEPLMNLLSA-------------------------------------KDTKIIQVILDAISNIFQAAEKLGETEKLSIM 400 (434)
T ss_dssp CHHHHHHHTTS-------------------------------------SCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cHHHHHHHhcC-------------------------------------CCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 46667777621 235688899999998886433 223333
Q ss_pred HHh--hhhhHHHhhcchhhhhHHHHHHHHHH
Q psy14676 463 YRL--VSPPLIARFKEREENVKSDIFHAYMA 491 (1827)
Q Consensus 463 ~~~--l~~~L~~~~~d~~~~Vr~~a~~~l~~ 491 (1827)
++. ..+.+.....+..++||..|...+..
T Consensus 401 ~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~ 431 (434)
T d1q1sc_ 401 IEECGGLDKIEALQRHENESVYKASLNLIEK 431 (434)
T ss_dssp HHHTTSHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 332 23444333344467888887765543
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=5.7e-08 Score=122.25 Aligned_cols=482 Identities=12% Similarity=0.077 Sum_probs=275.3
Q ss_pred CchHHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHH
Q psy14676 3 SDKEQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVIL 81 (1827)
Q Consensus 3 ~~~~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il 81 (1827)
+++..+|.-+..+|..+...-+.. ........++|.|+..+.+..++.+++.|..+|..++.+-... .. .....+
T Consensus 28 ~~~~~v~~~A~~~l~~l~~~~~~~---~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~-~~i~~~g~i 103 (529)
T d1jdha_ 28 DEDQVVVNKAAVMVHQLSKKEASR---HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGI 103 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHH---HHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH-HHHHHTTHH
T ss_pred CCCHHHHHHHHHHHHHHHhccHHH---HHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH-HHHHHCCCH
Confidence 344567888888887775431110 0001124578999999987778999999999999986432211 11 112457
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh--HH--HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchh-hHHh
Q psy14676 82 TALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ--LY--TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHR-FAEH 156 (1827)
Q Consensus 82 ~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~--~~--~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~-~~p~ 156 (1827)
+.++..|.++++.++..|+.+|++++...+.. .+ ...++.++..|.. ++..++..++.+++.++...... ..-.
T Consensus 104 ~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 182 (529)
T d1jdha_ 104 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIIL 182 (529)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHc-cChHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 88889999999999999999999998865532 12 2356777777754 56889999999999998643322 1111
Q ss_pred HHHHHHHHHhhcc-cCchHHHHHHHHHHHHHHHhCCCccccch-HHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCC
Q psy14676 157 IERVMPLILKYSR-EEDDELREFCLQACEAFVQRCPKEITPHI-QSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMD 234 (1827)
Q Consensus 157 l~~i~p~l~~~~~-~~~delRe~al~ale~~~~~~p~e~~p~l-~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d 234 (1827)
-...++.+...+. .+.+.+++.+..++..+.. +++.-.++. ...++.+.+.+..
T Consensus 183 ~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~-~~~~~~~~~~~g~~~~L~~ll~~----------------------- 238 (529)
T d1jdha_ 183 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTD----------------------- 238 (529)
T ss_dssp HTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTS-----------------------
T ss_pred hcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc-cccccchhhhhhhhhhHHHHhcc-----------------------
Confidence 2334556666554 3556788888777765532 332211111 1345555554421
Q ss_pred CcccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHHhhhHHHHhhcCCCCHhHHHHHHHHHHHHHh
Q psy14676 235 TEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYRLVSPPLIARFKEREENVKSDIFHAYMALLK 314 (1827)
Q Consensus 235 ~~~~d~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~~v~p~L~~~l~e~ee~VR~aa~~al~~ll~ 314 (1827)
.+.+++..++.++..+....... .....++|.|++.+++.++++|..+..+++.+..
T Consensus 239 ---------------------~~~~~~~~a~~~l~~ls~~~~~~--~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~ 295 (529)
T d1jdha_ 239 ---------------------PSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295 (529)
T ss_dssp ---------------------SCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred ---------------------cchhhhhhhhhHHHhccccccch--hhhhhcchhhhhhcccccHHHHHHHHHHHHhhcc
Confidence 01256777888887776443322 2235678999999999999999999999988763
Q ss_pred hhcccCCCCCCCCCCCCCCCChHhhHH--hhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccc-c-C--chhhH
Q psy14676 315 GTRTFSPLTPSDPNQMDQEDSPLCLLS--TQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCL-A-P--SLPAL 388 (1827)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l-~-~--~l~~L 388 (1827)
... .....+. ..++.++..+.+ ..+++.++..+...+..+....+..- . . .....
T Consensus 296 ~~~-----------------~~~~~i~~~~~i~~Li~~l~~--~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~ 356 (529)
T d1jdha_ 296 NNY-----------------KNKMMVCQVGGIEALVRTVLR--AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYG 356 (529)
T ss_dssp TCH-----------------HHHHHHHHTTHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTC
T ss_pred chh-----------------HHHHHHHHhhhHHHHHHHHHh--hhcchhHHHHHHHHhhcccchhhcchhhhhhHHhccc
Confidence 210 0111111 123333333322 23556788888877777764332210 0 0 01122
Q ss_pred HHHHHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh--hhhhhhHHhh
Q psy14676 389 IPDVTSVAEWDEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR--DLIGDMYRLV 466 (1827)
Q Consensus 389 lp~i~~~L~~~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~--~~f~~~~~~l 466 (1827)
++.+...+.. +.+|.++.++..++..++.... ..+.. ...
T Consensus 357 l~~L~~ll~~------------------------------------~~~~~~~~~~~~~l~~l~~~~~~~~~l~~--~g~ 398 (529)
T d1jdha_ 357 LPVVVKLLHP------------------------------------PSHWPLIKATVGLIRNLALCPANHAPLRE--QGA 398 (529)
T ss_dssp HHHHHHTTST------------------------------------TCCHHHHHHHHHHHHHHTTSGGGHHHHHH--TTH
T ss_pred chhHHHHHhc------------------------------------cchHHHHHHHHHHHhhcchhhhhhhhhhh--ccc
Confidence 4445555421 1357788888888888875433 22221 235
Q ss_pred hhhHHHhhcchhhhhHHHHHHHHHHHHhhcccCCCCCCCCCcccccCCCccchhhchhhHHHHHHHHHhhhhhhh---hH
Q psy14676 467 SPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPVCLLSTQVPSLVKALQCQLREKSIR---TR 543 (1827)
Q Consensus 467 ~~~L~~~~~d~~~~Vr~~a~~~l~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~l~~~~~~---~~ 543 (1827)
++.++..+.+....++..+..........-+ .....+.. .....+.....+..-+ ..
T Consensus 399 i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~---~~~~al~~la~~~~~r~~~~~ 458 (529)
T d1jdha_ 399 IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG-----------------VRMEEIVE---GCTGALHILARDVHNRIVIRG 458 (529)
T ss_dssp HHHHHHHHHHHHHHHC-----------CBTT-----------------BCHHHHHH---HHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHhhhhhHHhhcc-----------------cchHHHHH---HHHHHHHHHccCHHHHHHHHH
Confidence 5666666666655444433321110000000 00000111 1122222111111101 12
Q ss_pred HhHHHHHHHhhcCCCccccccchHHHHHHHhhhccccchhhHHHHHHHHHHHhhcchhhHHHHHHHhhhhH
Q psy14676 544 QDCLALLRELMTSSDKDFRFMATNDLMSELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPL 614 (1827)
Q Consensus 544 ~~~l~~l~~~~~d~dpd~Rf~a~~dl~~~~~~~~~~~d~~~~~~i~~~l~~~l~D~~~eV~~~A~~~lg~l 614 (1827)
.+.++.+.+.+.+.++++|..+...|......+..+ +.-.....++.|.+++++.+.+||+.|..+|.++
T Consensus 459 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~-~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l 528 (529)
T d1jdha_ 459 LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA-EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHH-HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcChhhH-HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 256888999999999999998888777654321000 0011222467799999999999999999988765
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.84 E-value=7.6e-08 Score=120.32 Aligned_cols=324 Identities=14% Similarity=0.104 Sum_probs=207.8
Q ss_pred HHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHh
Q psy14676 7 QLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTALL 85 (1827)
Q Consensus 7 ~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll 85 (1827)
+.+--+..+++.+.+.-..+ ....-+..-++|.|+..+.++.++.++..|+.+|+.++......... ....+++.+.
T Consensus 91 ~~~~~a~~~~r~~ls~~~~~--~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~ 168 (503)
T d1wa5b_ 91 QEQLSATVKFRQILSREHRP--PIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFI 168 (503)
T ss_dssp HHHHHHHHHHHHHTCCSSSC--SHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCc--hHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHH
Confidence 33334444555554321111 22233445688999999976668899999999999987643322111 1224677788
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhhchh---HHH-HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhch-hhHHhHHHH
Q psy14676 86 PQLSSPRQAVRKRTIVALSHLVMSCNLQ---LYT-KLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGH-RFAEHIERV 160 (1827)
Q Consensus 86 ~~L~~~~~~VRk~Ai~aL~~l~~~~~~~---~~~-~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~-~~~p~l~~i 160 (1827)
..|.+++..++..|+.+|++++...+.. ... ..++.++..+.. ....+++.++.++..+++.... .-......+
T Consensus 169 ~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~-~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~ 247 (503)
T d1wa5b_ 169 QLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQA 247 (503)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGG
T ss_pred HHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhccc-CCHHHHHHHHHHHHHHhcCCccchHHHHHHHH
Confidence 8888999999999999999998754321 111 234566665554 4567889999999999975432 223356788
Q ss_pred HHHHHhhcccCchHHHHHHHHHHHHHHHhCCCccccch-HHHHHHHHHHhccCCCCCcccccccCCCCCCCCCCCCcccC
Q psy14676 161 MPLILKYSREEDDELREFCLQACEAFVQRCPKEITPHI-QSITELCLTYITYDPNYNYEDEEEGLGGEGGGEGMDTEEED 239 (1827)
Q Consensus 161 ~p~l~~~~~~~~delRe~al~ale~~~~~~p~e~~p~l-~~ii~~ll~~l~~dpn~~~~ddd~~~~~~~~~~~~d~~~~d 239 (1827)
+|.+...+..++++++..|+.++..++...+......+ ..+++.+...+..
T Consensus 248 l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~---------------------------- 299 (503)
T d1wa5b_ 248 LPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH---------------------------- 299 (503)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC----------------------------
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccC----------------------------
Confidence 99999999888999998888888776654332222222 2345555554422
Q ss_pred CCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchhhhHH-hhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcc
Q psy14676 240 GEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYR-LVSPPLIARFKEREENVKSDIFHAYMALLKGTRT 318 (1827)
Q Consensus 240 ~dde~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~~~~~-~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~ 318 (1827)
.++.++..++.+++.++.........++. .++|.|...+++..+.+|..++.+++.++...
T Consensus 300 ----------------~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~-- 361 (503)
T d1wa5b_ 300 ----------------ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN-- 361 (503)
T ss_dssp ----------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--
T ss_pred ----------------CchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcc--
Confidence 12478899999999988654433322222 57889999999999999999999999887311
Q ss_pred cCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcc---cccCc-hhhHHHHHHH
Q psy14676 319 FSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPG---CLAPS-LPALIPDVTS 394 (1827)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~---~l~~~-l~~Llp~i~~ 394 (1827)
......+. -..+++.+.+.+...+.+++..+..++..+...... .+..- -..+++.+..
T Consensus 362 ---------------~~~~~~i~--~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~ 424 (503)
T d1wa5b_ 362 ---------------TEQIQAVI--DANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCD 424 (503)
T ss_dssp ---------------HHHHHHHH--HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHH
T ss_pred ---------------HHHHHHHH--HccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHH
Confidence 00111111 123566777777789999998777677777654321 11100 0234566667
Q ss_pred Hh
Q psy14676 395 VA 396 (1827)
Q Consensus 395 ~L 396 (1827)
.|
T Consensus 425 ~L 426 (503)
T d1wa5b_ 425 LL 426 (503)
T ss_dssp HT
T ss_pred Hh
Confidence 76
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.77 E-value=2.3e-07 Score=115.90 Aligned_cols=352 Identities=14% Similarity=0.113 Sum_probs=224.7
Q ss_pred CchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhh-hhhhHHHHHhhc-CCchhhHHHHHHHHHH
Q psy14676 1034 NLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFY-YFLLSPVIASVG-DNFYKITAEALLVLQQ 1111 (1827)
Q Consensus 1034 ~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l-~~Lip~l~~~l~-D~~~~V~~eAl~~l~~ 1111 (1827)
.-+|.+.+.+.+++...+..++..+..+.+..... +. ...+ ..++|.+++.+. +.++.++.+|++++..
T Consensus 76 ~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~--~i-------~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~n 146 (503)
T d1wa5b_ 76 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRP--PI-------DVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTN 146 (503)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSC--SH-------HHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCc--hH-------HHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 45778888888888888888877777443322111 00 0001 247888999987 4567789899988887
Q ss_pred HHHHhccCCCCCCCCcch-hH-HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhh--hhhhHHHHHHhhhh
Q psy14676 1112 FVKVIRPLTSPSSYDFAP-FT-SDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSE--LPVCLPILLDRLRN 1187 (1827)
Q Consensus 1112 lv~~l~~~~~~~~~~~~~-~l-~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~--l~~lL~~Ll~~L~~ 1187 (1827)
+... ...... .. ..+++.+...+. +.+.++++.|+.+++.++..... .... -..+++.|+..+.+
T Consensus 147 i~~~--------~~~~~~~~~~~g~i~~l~~lL~--s~~~~i~~~a~~~L~nia~~~~~-~r~~l~~~~~~~~L~~ll~~ 215 (503)
T d1wa5b_ 147 IASG--------TSAQTKVVVDADAVPLFIQLLY--TGSVEVKEQAIWALGNVAGDSTD-YRDYVLQCNAMEPILGLFNS 215 (503)
T ss_dssp HTTS--------CHHHHHHHHHTTCHHHHHHHHH--HCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHHHHHHGGGS
T ss_pred HHcC--------CHHHHHHHHhCCChHHHHHHhc--CCChhHHHHHHHHHHHHhhhhHH-HHHHHHhhcccccchhhccc
Confidence 7631 011111 11 124555666666 56789999999999998754322 2221 22367777777765
Q ss_pred hh--hHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhh
Q psy14676 1188 EI--TRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAP 1265 (1827)
Q Consensus 1188 e~--tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ 1265 (1827)
.. .+..++.++..++.......-......+++.+..++...+..++..++.+|..++.........-.-..+++.+..
T Consensus 216 ~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ 295 (503)
T d1wa5b_ 216 NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE 295 (503)
T ss_dssp CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhh
Confidence 44 3677888888888653221112345678899999999888999999999999887642221111111245667778
Q ss_pred hcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhh
Q psy14676 1266 LVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAV 1345 (1827)
Q Consensus 1266 ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~ 1345 (1827)
++...+..+...++.+++.++...+... .. + ....+++.+...+.++++++|..++.+|++++.
T Consensus 296 ll~~~~~~v~~~al~~l~nl~~~~~~~~------~~-------~---~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~ 359 (503)
T d1wa5b_ 296 LLSHESTLVQTPALRAVGNIVTGNDLQT------QV-------V---INAGVLPALRLLLSSPKENIKKEACWTISNITA 359 (503)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTTSCHHHH------HH-------H---HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred cccCCchhhhhhHHHHHHHHHHHHHHHH------Hh-------h---hccchHHHHHHHhcCCCHHHHHHHHHHHHHHhh
Confidence 8889999999999999998875332110 00 0 012477888899999999999999999999876
Q ss_pred hhh--------hhhHHHHHHhhhc-CchhhHHHHHHHHHHHhhccccccchhhhhchH-HHHHHHHhhhhcCCchhHHHH
Q psy14676 1346 GNL--------QQYVPFVLKEIEN-QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFV-PAIWAQLFLHCECQEEGTRNV 1415 (1827)
Q Consensus 1346 ~~l--------~~~LP~Il~~i~~-~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~-~~i~~~L~~~~~~~~e~vR~~ 1415 (1827)
++- ..++|.+++.+.. ..+.+.-+.++|.-++...... .+.+...+ ..+++.|++.+...+..+...
T Consensus 360 ~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~---~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~ 436 (503)
T d1wa5b_ 360 GNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQR---PDIIRYLVSQGCIKPLCDLLEIADNRIIEV 436 (503)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTC---THHHHHHHHTTCHHHHHHHTTTCCHHHHHH
T ss_pred ccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhccccc---HHHHHHHHHCCcHHHHHHHhcCCCHHHHHH
Confidence 542 2467888887765 3456777788888887632110 11111111 124556666666666666666
Q ss_pred HHHHHHHhh
Q psy14676 1416 VAECLGKLT 1424 (1827)
Q Consensus 1416 aAecLGkL~ 1424 (1827)
+-++|.+|.
T Consensus 437 ~L~~l~~ll 445 (503)
T d1wa5b_ 437 TLDALENIL 445 (503)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666654
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.68 E-value=4.1e-07 Score=103.25 Aligned_cols=247 Identities=11% Similarity=0.101 Sum_probs=164.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhhh--HHHHHHHHHHHhcCCCccccchhh
Q psy14676 1137 CTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEIT--RLTTVKALTKIAASPLRIDLRPIL 1214 (1827)
Q Consensus 1137 ~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~t--R~~av~al~~ia~~~~~~dl~p~~ 1214 (1827)
.++..|. |.++.||..|+.+|+.+ |. +..+|.+++.+++++. |..|+.+|+.+..... ..
T Consensus 23 ~L~~~L~--d~~~~vR~~A~~~L~~~----~~------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~------~~ 84 (276)
T d1oyza_ 23 ELFRLLD--DHNSLKRISSARVLQLR----GG------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK------CE 84 (276)
T ss_dssp HHHHHTT--CSSHHHHHHHHHHHHHH----CC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT------TH
T ss_pred HHHHHhc--CCCHHHHHHHHHHHHhh----CC------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc------cc
Confidence 3455555 88999999999999875 32 4577888888876654 9999999998764321 11
Q ss_pred hhhHhh-hhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCcc
Q psy14676 1215 TDGIPI-LGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNAL 1293 (1827)
Q Consensus 1215 ~~~l~~-L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~ 1293 (1827)
...++. +...+++.++.+|..++.+|+.+....+ .....+++.+...+.|.+..++..+...++.
T Consensus 85 ~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~-----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~--------- 150 (276)
T d1oyza_ 85 DNVFNILNNMALNDKSACVRATAIESTAQRCKKNP-----IYSPKIVEQSQITAFDKSTNVRRATAFAISV--------- 150 (276)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHT---------
T ss_pred cchHHHHHHHHhcCCChhHHHHHHHHHHHHccccc-----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhh---------
Confidence 222233 2335677889999999999999876522 2345677888888999998888776654432
Q ss_pred chhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhHHHHHHhhhcC-chhhHHHHHH
Q psy14676 1294 VEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYVPFVLKEIENQ-PKRQYLLLHS 1372 (1827)
Q Consensus 1294 ~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~i~~~-~~~q~~~l~a 1372 (1827)
+|. +...+.++..+.+.+..++..+..+++....+. ....+.++..+.+. ...+.....+
T Consensus 151 -----------~~~-------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a 211 (276)
T d1oyza_ 151 -----------IND-------KATIPLLINLLKDPNGDVRNWAAFAININKYDN-SDIRDCFVEMLQDKNEEVRIEAIIG 211 (276)
T ss_dssp -----------C----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC-HHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred -----------cch-------HHHHHHHHHhcccccchhhhhHHHHHHhhhccc-cccchhhhhhhhhhhhhhhhhhccc
Confidence 221 234567778888899999999998888765544 34455566655442 2233333444
Q ss_pred HHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHHHhhccCCCcchHHHHHhhhc-CCHHHHHHHH
Q psy14676 1373 LKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKS-NSALMRTTVL 1451 (1827)
Q Consensus 1373 L~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l~~-~~~~~R~t~l 1451 (1827)
++.+ |. .+. ++.|++.+. ++.+|..++.+||++. ....+|.|.+.+.+ .+..+|..++
T Consensus 212 l~~~---------~~---~~~----~~~L~~~l~--d~~vr~~a~~aL~~ig---~~~~~~~L~~~l~~~~d~~vr~~A~ 270 (276)
T d1oyza_ 212 LSYR---------KD---KRV----LSVLCDELK--KNTVYDDIIEAAGELG---DKTLLPVLDTMLYKFDDNEIITSAI 270 (276)
T ss_dssp HHHT---------TC---GGG----HHHHHHHHT--SSSCCHHHHHHHHHHC---CGGGHHHHHHHHTTSSCCHHHHHHH
T ss_pred cchh---------hh---hhh----HHHHHHHhC--ChHHHHHHHHHHHHcC---CHHHHHHHHHHHccCCCHHHHHHHH
Confidence 4332 11 123 334444433 2458999999999986 24578999998875 4788998888
Q ss_pred HHHH
Q psy14676 1452 TAVK 1455 (1827)
Q Consensus 1452 ~Alk 1455 (1827)
.+|+
T Consensus 271 ~~L~ 274 (276)
T d1oyza_ 271 DKLK 274 (276)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8875
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.65 E-value=6.4e-07 Score=101.60 Aligned_cols=238 Identities=12% Similarity=0.062 Sum_probs=160.7
Q ss_pred chHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHH
Q psy14676 1035 LLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVK 1114 (1827)
Q Consensus 1035 llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~ 1114 (1827)
..+.|.+.|+++++.+|..|+..|+.+.. +..+|.++..++|+++.||..|+.+++.+..
T Consensus 20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~--------------------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~ 79 (276)
T d1oyza_ 20 NDDELFRLLDDHNSLKRISSARVLQLRGG--------------------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI 79 (276)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHhhCC--------------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 35567788888999999999998886521 2467888999999999999999888877531
Q ss_pred HhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHhhhhhh--hHH
Q psy14676 1115 VIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDRLRNEI--TRL 1192 (1827)
Q Consensus 1115 ~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~L~~e~--tR~ 1192 (1827)
. ... -....+.++..+. +|.+..||..|+.+++.+..... ...+.+++.+...+.++. .|.
T Consensus 80 ~---------~~~---~~~~~~~l~~~~l-~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~ 142 (276)
T d1oyza_ 80 C---------KKC---EDNVFNILNNMAL-NDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRR 142 (276)
T ss_dssp C---------TTT---HHHHHHHHHHHHH-HCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHH
T ss_pred c---------ccc---ccchHHHHHHHHh-cCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHH
Confidence 1 111 1222333333333 48899999999999998875432 234567777777776554 388
Q ss_pred HHHHHHHHHhcCCCccccchhhhhhHhhhhhhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCCh
Q psy14676 1193 TTVKALTKIAASPLRIDLRPILTDGIPILGSFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDL 1272 (1827)
Q Consensus 1193 ~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~ 1272 (1827)
.++.+++.+.. ...++.+..++...++.+|..+..++...... .. ...+.+...+.+.+.
T Consensus 143 ~a~~~l~~~~~-----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~~~~~~ 202 (276)
T d1oyza_ 143 ATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYD-----NS----DIRDCFVEMLQDKNE 202 (276)
T ss_dssp HHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC-----CH----HHHHHHHHHTTCSCH
T ss_pred HHHHHHhhcch-----------HHHHHHHHHhcccccchhhhhHHHHHHhhhcc-----cc----ccchhhhhhhhhhhh
Confidence 88888876542 23356666677777888888877777653221 11 233445566788888
Q ss_pred hHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhhhhH
Q psy14676 1273 HIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQQYV 1352 (1827)
Q Consensus 1273 ~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~~~L 1352 (1827)
.++..+...++. +| .+..++.++..+.+ ++||..|+.+||.+|. +..+
T Consensus 203 ~~~~~~~~al~~--------------------~~-------~~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~---~~~~ 250 (276)
T d1oyza_ 203 EVRIEAIIGLSY--------------------RK-------DKRVLSVLCDELKK--NTVYDDIIEAAGELGD---KTLL 250 (276)
T ss_dssp HHHHHHHHHHHH--------------------TT-------CGGGHHHHHHHHTS--SSCCHHHHHHHHHHCC---GGGH
T ss_pred hhhhhhccccch--------------------hh-------hhhhHHHHHHHhCC--hHHHHHHHHHHHHcCC---HHHH
Confidence 888776655432 11 13466777888875 4699999999999984 3477
Q ss_pred HHHHHhhhc
Q psy14676 1353 PFVLKEIEN 1361 (1827)
Q Consensus 1353 P~Il~~i~~ 1361 (1827)
|.+.+.+.+
T Consensus 251 ~~L~~~l~~ 259 (276)
T d1oyza_ 251 PVLDTMLYK 259 (276)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcc
Confidence 777776655
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=6.4e-05 Score=89.85 Aligned_cols=113 Identities=9% Similarity=0.041 Sum_probs=76.9
Q ss_pred chHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhHHHHHhhcCCchhhHHHHHHHHHHHHH
Q psy14676 1035 LLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLSPVIASVGDNFYKITAEALLVLQQFVK 1114 (1827)
Q Consensus 1035 llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip~l~~~l~D~~~~V~~eAl~~l~~lv~ 1114 (1827)
.+|.+++.|+++++.+|..++.+|+-+....... +.. -.-...+|.+++.+++++++++..|+++++.++.
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~-~~~--------i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 73 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESA-KQQ--------VYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVF 73 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSH-HHH--------HHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHH-HHH--------HHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 5899999999999999999999999765432211 110 0012458999999999999999999999998872
Q ss_pred HhccCCCCCCCCcchhHH--HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q psy14676 1115 VIRPLTSPSSYDFAPFTS--DIYQCTLVRLKAADIDQEVKERAISCMGQIICN 1165 (1827)
Q Consensus 1115 ~l~~~~~~~~~~~~~~l~--~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~ 1165 (1827)
. ....+..+. ..++.++..+. ++.+.++|..|..++..+...
T Consensus 74 ~--------~~~~~~~i~~~g~v~~li~~l~-~~~~~~~~~~a~~~l~~l~~~ 117 (457)
T d1xm9a1 74 R--------STTNKLETRRQNGIREAVSLLR-RTGNAEIQKQLTGLLWNLSST 117 (457)
T ss_dssp S--------CHHHHHHHHHTTCHHHHHHHHT-TCCCHHHHHHHHHHHHHHHTS
T ss_pred C--------CHHHHHHHHHCCChHHHHHHHh-ccCcHHHHHHHHHHHHHHHhh
Confidence 1 001111111 11344444443 567889999999999998764
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=0.00035 Score=83.19 Aligned_cols=405 Identities=10% Similarity=0.007 Sum_probs=199.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhchh--H
Q psy14676 38 ITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTALLPQLSSPRQAVRKRTIVALSHLVMSCNLQ--L 114 (1827)
Q Consensus 38 L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~ll~~L~~~~~~VRk~Ai~aL~~l~~~~~~~--~ 114 (1827)
.+|.|++.+.++ ++.++..|..+|+.++..-...-.. ...-.++.|+..|.++++.+|..|+.||.+++..-++. .
T Consensus 3 ~ip~lv~~L~~~-~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 81 (457)
T d1xm9a1 3 TIPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHhCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 379999999765 8999999999999997432211000 11235677889999999999999999999998543321 1
Q ss_pred HHH--HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHhhc---------------ccCchHHHH
Q psy14676 115 YTK--LIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLILKYS---------------REEDDELRE 177 (1827)
Q Consensus 115 ~~~--l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~~~~---------------~~~~delRe 177 (1827)
+.+ .++.++..+....+..++..++.++..++..........-..+.+.+.... ...+.++++
T Consensus 82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 161 (457)
T d1xm9a1 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence 111 257777777777778899999999999987654332222222222222211 124667777
Q ss_pred HHHHHHHHHHHhCCCcc--ccchHHHHHHHHHHhcc-------CCCCCcc--cccccCCCCCCCCCCCCcc----cCCCC
Q psy14676 178 FCLQACEAFVQRCPKEI--TPHIQSITELCLTYITY-------DPNYNYE--DEEEGLGGEGGGEGMDTEE----EDGED 242 (1827)
Q Consensus 178 ~al~ale~~~~~~p~e~--~p~l~~ii~~ll~~l~~-------dpn~~~~--ddd~~~~~~~~~~~~d~~~----~d~dd 242 (1827)
.+..++..+... ++.. ......+++.+.+.+.. +...... ....+.... ......... .....
T Consensus 162 ~a~~~l~~~~~~-~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 239 (457)
T d1xm9a1 162 NATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYR-LDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTT-HHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHhcC-chHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHhhhhh
Confidence 666555433221 1000 00011223333332221 1000000 000000000 000000000 00000
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHHHcCCchh-hhHHhhhHHHHhhc-CCCCHhHHHHHHHHHHHHHhhhcccC
Q psy14676 243 EGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIG-DMYRLVSPPLIARF-KEREENVKSDIFHAYMALLKGTRTFS 320 (1827)
Q Consensus 243 e~e~~~e~sdddD~sWkVRraAak~L~~l~~~~~~~l~-~~~~~v~p~L~~~l-~e~ee~VR~aa~~al~~ll~~~~~~~ 320 (1827)
.........-....+-..+...+.+........+.... .....+.+.++..+ ....+.++..+..++..+.....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~--- 316 (457)
T d1xm9a1 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKG--- 316 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSS---
T ss_pred hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccc---
Confidence 00000000000000000000000000000000001111 12224556666555 34567778887777776652110
Q ss_pred CCCCCCCCCCCCCCChHhhHHh--hhHHHHHHHHHHhccCCHhHHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHhhh
Q psy14676 321 PLTPSDPNQMDQEDSPLCLLST--QVPSLVKALQCQLREKSIRTRQDCLALLRELVQTLPGCLAPSLPALIPDVTSVAEW 398 (1827)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~l~~--~lp~Iv~~l~~~L~d~~~~vR~a~~~ll~~L~~vl~~~l~~~l~~Llp~i~~~L~~ 398 (1827)
......... .-..+++.+.+.|+++++++|..+...+..++..-.. ........+|.+...+..
T Consensus 317 -------------~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~-~~~i~~~~i~~li~~L~~ 382 (457)
T d1xm9a1 317 -------------LMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL-HRVMGNQVFPEVTRLLTS 382 (457)
T ss_dssp -------------SHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGG-HHHHHHHTHHHHHHTTTS
T ss_pred -------------cchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhH-HHHHHHhhHHHHHHHHhc
Confidence 000000111 1123567788888999999999999999988754221 111112345666666632
Q ss_pred hhcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhhhhhhHH-hhhhhHHHhhcch
Q psy14676 399 DEEEGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRRDLIGDMYR-LVSPPLIARFKER 477 (1827)
Q Consensus 399 ~~~~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~~~f~~~~~-~l~~~L~~~~~d~ 477 (1827)
.. ...+....++..|+.++..++...++.-...++ ..++.|+..+.+.
T Consensus 383 ~~-------------------------------~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~ 431 (457)
T d1xm9a1 383 HT-------------------------------GNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSS 431 (457)
T ss_dssp CC-------------------------------SCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCT
T ss_pred cc-------------------------------cCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCC
Confidence 10 001123458999999999988544432222222 3567888877665
Q ss_pred -hhhhHHHHHHHHHHHH
Q psy14676 478 -EENVKSDIFHAYMALL 493 (1827)
Q Consensus 478 -~~~Vr~~a~~~l~~L~ 493 (1827)
.+.++.+|...|..|.
T Consensus 432 ~~~~~~~aA~~~L~~L~ 448 (457)
T d1xm9a1 432 ASPKAAEAARLLLSDMW 448 (457)
T ss_dssp TCHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 5688998887776663
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=0.00015 Score=81.50 Aligned_cols=185 Identities=11% Similarity=0.080 Sum_probs=123.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHh-hh--hhhhHHHHHHHHHHHhcCCCccccchhhhhhHhhhhh
Q psy14676 1147 IDQEVKERAISCMGQIICNLGDYLKSELPVCLPILLDR-LR--NEITRLTTVKALTKIAASPLRIDLRPILTDGIPILGS 1223 (1827)
Q Consensus 1147 ~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL~~Ll~~-L~--~e~tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~ 1223 (1827)
.|.++|+.|+.++..+++.....-.=.....++.++.. ++ +...|..|+.+++.++.........-.-..+++.|..
T Consensus 29 ~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~ 108 (264)
T d1xqra1 29 ADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 108 (264)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 45788999999999998653211000111234555544 33 3345999999999999753211111122467888888
Q ss_pred hhc-chhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhh
Q psy14676 1224 FLR-KNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASIL 1302 (1827)
Q Consensus 1224 ~Lr-k~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~l 1302 (1827)
++. +.+..+|..++.+|..++...+.....-.....++.|..++.+.+..++..++.+|..++...+....
T Consensus 109 lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~-------- 180 (264)
T d1xqra1 109 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKG-------- 180 (264)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHH--------
T ss_pred HhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHH--------
Confidence 886 34678999999999999875432111111223567777888889999999999999998886553210
Q ss_pred hhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhh
Q psy14676 1303 PQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGN 1347 (1827)
Q Consensus 1303 geiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~ 1347 (1827)
. + .....++.+...+.++++++|..|..+|++++..+
T Consensus 181 -~----~---~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~ 217 (264)
T d1xqra1 181 -T----L---CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 217 (264)
T ss_dssp -H----H---HHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred -H----H---HHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 0 0 01246788899999999999999999999987554
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.65 E-value=1.1e-05 Score=78.35 Aligned_cols=109 Identities=18% Similarity=0.184 Sum_probs=77.4
Q ss_pred cCCchhHHHHHHHHHHHhhccCCCcchHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhhhhhcc
Q psy14676 1406 ECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTVLTAVKFTISDQMTSSDKDFRFMATNDLMSELQKDS 1485 (1827)
Q Consensus 1406 ~~~~e~vR~~aAecLGkL~~~~p~~~lP~L~~~l~~~~~~~R~t~l~Alk~~~~~~~~~~d~~l~~~a~~~l~~~l~~~~ 1485 (1827)
.++++.+|..++.+||++. ...++.|.+.++++++.+|..++.++..+..
T Consensus 2 ~D~~~~VR~~A~~aL~~~~----~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-------------------------- 51 (111)
T d1te4a_ 2 ADENKWVRRDVSTALSRMG----DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------------------------- 51 (111)
T ss_dssp CSSCCCSSSSCCSSTTSCS----STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------------------------
T ss_pred CCcCHHHHHHHHHHHHHhC----HHHHHHHHHHHcCCCHHHHHHHHHHHHhcch--------------------------
Confidence 3556678888888888764 3446788889999999999988888754421
Q ss_pred cccChhHHHHHHHHHHHhhcCCchHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhcccccccccCCccchhHHHHHHH
Q psy14676 1486 IKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEFQVETIVDALCSNMVSDKEQLRDISSIGLKTVISVVY 1565 (1827)
Q Consensus 1486 ~~~~~~~~~~l~~~ll~~l~D~~~~Vr~~a~~~Lg~L~~~l~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~vRr~Al~~l 1565 (1827)
...+|.+..+++|+++.||..|+.+||++.. ....+.+.. +..+ ++..||+.|..+|
T Consensus 52 --------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~----~~~~~~L~~----ll~d-------~~~~vr~~A~~aL 108 (111)
T d1te4a_ 52 --------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----ERVRAAMEK----LAET-------GTGFARKVAVNYL 108 (111)
T ss_dssp --------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----HHHHHHHHH----HTTS-------CCTHHHHHHHHHG
T ss_pred --------hhhHHHHHhhhccchhHHHHHHHHHHHHhCc----cchHHHHHH----HHcC-------CCHHHHHHHHHHH
Confidence 1345888889999999999999999998753 222222222 2223 3348999999988
Q ss_pred hh
Q psy14676 1566 CL 1567 (1827)
Q Consensus 1566 ~s 1567 (1827)
.+
T Consensus 109 ~t 110 (111)
T d1te4a_ 109 ET 110 (111)
T ss_dssp GG
T ss_pred Hc
Confidence 64
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=0.00013 Score=81.97 Aligned_cols=182 Identities=14% Similarity=0.117 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHH
Q psy14676 6 EQLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAIEKQEDVSVQLEALDILSDLLSRFGALLPS-FHFVILTAL 84 (1827)
Q Consensus 6 ~~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l~~~~~~~v~~~al~iL~~l~~~~~~~l~~-~~~~il~~l 84 (1827)
++.|..+.-+|..++....... .-+.---+|.|+..+-+.+++.+|..|+.+|+.++.+....-.. .....++.+
T Consensus 31 ~~~~~~Al~~L~~L~~~~d~a~----~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L 106 (264)
T d1xqra1 31 QQEREGALELLADLCENMDNAA----DFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL 106 (264)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHH----HHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHH----HHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 4556666666666654322110 00111124555543333468999999999999999765432111 123567888
Q ss_pred hhhcC-CCCHHHHHHHHHHHHHHHHhhchhH--H--HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHH-
Q psy14676 85 LPQLS-SPRQAVRKRTIVALSHLVMSCNLQL--Y--TKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIE- 158 (1827)
Q Consensus 85 l~~L~-~~~~~VRk~Ai~aL~~l~~~~~~~~--~--~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~- 158 (1827)
++.|. ++++.||.+|+.|++.++...++.. + ...++.++..|.+ .+..++..++.+++.++...+........
T Consensus 107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 185 (264)
T d1xqra1 107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ-QVQKLKVKSAFLLQNLLVGHPEHKGTLCSM 185 (264)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhc-CchHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence 88886 5678999999999999998765432 1 1235666666655 46789999999999999887765554443
Q ss_pred HHHHHHHhhcccCchHHHHHHHHHHHHHHHhCCC
Q psy14676 159 RVMPLILKYSREEDDELREFCLQACEAFVQRCPK 192 (1827)
Q Consensus 159 ~i~p~l~~~~~~~~delRe~al~ale~~~~~~p~ 192 (1827)
+.+|.+...++.+++++|+.|+.++..++..+|.
T Consensus 186 ~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~ 219 (264)
T d1xqra1 186 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQ 219 (264)
T ss_dssp THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHH
Confidence 5789999999999999999999999998876654
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.46 E-value=2.8e-05 Score=75.17 Aligned_cols=109 Identities=14% Similarity=0.038 Sum_probs=83.7
Q ss_pred hhccccchhhHHHHHHhhhcccCCCCchHHHHHHhccCChhhHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhH
Q psy14676 1009 CECQEEGTRNVVAECLGKLTLIDPSNLLPRLQESLKSNSALMRTTHQSNQTFNVIIQRNDIHNHNEETSFIYSFYYFLLS 1088 (1827)
Q Consensus 1009 l~~~e~~vR~~a~e~Lg~L~~~~~~~llP~L~~~L~s~~~~~R~~a~~~L~~l~~~~~~~l~~~~~~~~~~~~~l~~Lip 1088 (1827)
|.|+++.||..|+..||++. +..+|.|.+.++++++.+|..++.+|+.+. -+..+|
T Consensus 1 L~D~~~~VR~~A~~aL~~~~----~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~--------------------~~~~~~ 56 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRMG----DEAFEPLLESLSNEDWRIRGAAAWIIGNFQ--------------------DERAVE 56 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSCS----STTHHHHHHGGGCSCHHHHHHHHHHHGGGC--------------------SHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhC----HHHHHHHHHHHcCCCHHHHHHHHHHHHhcc--------------------hhhhHH
Confidence 35778889988888888764 456788999999999999999999887431 234678
Q ss_pred HHHHhhcCCchhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy14676 1089 PVIASVGDNFYKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMG 1160 (1827)
Q Consensus 1089 ~l~~~l~D~~~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg 1160 (1827)
.+..+++|+++.||.+|+.+++.+.. ....+.+...+. |.+..||+.|+.+|.
T Consensus 57 ~L~~~l~d~~~~VR~~a~~aL~~i~~-----------------~~~~~~L~~ll~--d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 57 PLIKLLEDDSGFVRSGAARSLEQIGG-----------------ERVRAAMEKLAE--TGTGFARKVAVNYLE 109 (111)
T ss_dssp HHHHHHHHCCTHHHHHHHHHHHHHCS-----------------HHHHHHHHHHTT--SCCTHHHHHHHHHGG
T ss_pred HHHhhhccchhHHHHHHHHHHHHhCc-----------------cchHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence 88899999999999999999887531 123343444444 888999999999875
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=96.60 E-value=0.00012 Score=79.98 Aligned_cols=63 Identities=16% Similarity=0.105 Sum_probs=39.9
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHH
Q psy14676 86 PQLSSPRQAVRKRTIVALSHLVMSCNLQLYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQAGHRFAEHIERVMPLIL 165 (1827)
Q Consensus 86 ~~L~~~~~~VRk~Ai~aL~~l~~~~~~~~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~~~~~~~p~l~~i~p~l~ 165 (1827)
..|.||...||..|. .+++- ..+..|.+++++.||+.+...++ . +.+.
T Consensus 49 ~~l~~p~~e~Ra~Aa-------~~a~~--------~~L~~Ll~D~d~~VR~~AA~~Lp-------~----------~~L~ 96 (233)
T d1lrva_ 49 QYLADPFWERRAIAV-------RYSPV--------EALTPLIRDSDEVVRRAVAYRLP-------R----------EQLS 96 (233)
T ss_dssp GGTTCSSHHHHHHHH-------TTSCG--------GGGGGGTTCSSHHHHHHHHTTSC-------S----------GGGG
T ss_pred HHhcCCcHHHHHHHH-------hcCCH--------HHHHHHhcCCCHHHHHHHHHHcC-------H----------HHHH
Confidence 457889999996553 23332 13344666788999998865432 1 2345
Q ss_pred hhcccCchHHHHHHH
Q psy14676 166 KYSREEDDELREFCL 180 (1827)
Q Consensus 166 ~~~~~~~delRe~al 180 (1827)
..+++++.+||..+.
T Consensus 97 ~L~~D~d~~VR~~aa 111 (233)
T d1lrva_ 97 ALMFDEDREVRITVA 111 (233)
T ss_dssp GTTTCSCHHHHHHHH
T ss_pred HHhcCCChhHHHHHH
Confidence 566788889986554
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=95.15 E-value=1.1 Score=50.50 Aligned_cols=203 Identities=15% Similarity=0.197 Sum_probs=112.9
Q ss_pred hhhHHHHHHHHHHHHHHhccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhH
Q psy14676 1099 YKITAEALLVLQQFVKVIRPLTSPSSYDFAPFTSDIYQCTLVRLKAADIDQEVKERAISCMGQIICNLGDYLKSELPVCL 1178 (1827)
Q Consensus 1099 ~~V~~eAl~~l~~lv~~l~~~~~~~~~~~~~~l~~l~~~ll~~L~~~D~d~eVre~Ai~alg~l~~~~g~~l~~~l~~lL 1178 (1827)
..|..++...+..+++.+|... ..-+.++|..+ . ..++.|..-+ +.+...| -+..+
T Consensus 35 ~~v~~~~~~kF~~Lv~~lR~~~-------~e~l~~v~~~~----~---~~~~~r~~~l----Dal~~~G------T~~a~ 90 (336)
T d1lsha1 35 LSVHEDAPAKFLRLTAFLRNVD-------AGVLQSIWHKL----H---QQKDYRRWIL----DAVPAMA------TSEAL 90 (336)
T ss_dssp SSCCTTHHHHHHHHHHHHTTSC-------HHHHHHHHHHH----T---TSHHHHHHHH----HHHHHHC------SHHHH
T ss_pred cccCcchHHHHHHHHHHHHCCC-------HHHHHHHHHHH----h---cChhHHHHHH----HHHHHhC------CHHHH
Confidence 3455666677888888887421 13345555432 2 2344444322 3333334 24566
Q ss_pred HHHHHhhhhhh-hHHHHHHHHHHHhcCCCccccchhhhhhHhhhhhhhc----chhHHHHHHHHHHHHHHHHhCCC---C
Q psy14676 1179 PILLDRLRNEI-TRLTTVKALTKIAASPLRIDLRPILTDGIPILGSFLR----KNQRALKLSTLLLLDTLLVNYPS---A 1250 (1827)
Q Consensus 1179 ~~Ll~~L~~e~-tR~~av~al~~ia~~~~~~dl~p~~~~~l~~L~~~Lr----k~~r~lR~~al~aL~~L~~~~~~---~ 1250 (1827)
..+.+.+.++. +...|...+..++....+ . .+.+..+..++. ++++.+|..++-+++.++.++.. .
T Consensus 91 ~~i~~~I~~~~ls~~ea~~~l~~l~~~~~P---t---~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~ 164 (336)
T d1lsha1 91 LFLKRTLASEQLTSAEATQIVASTLSNQQA---T---RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVS 164 (336)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHTCCC---C---HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHhccCCC---C---HHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCC
Confidence 66777665543 455666666666543211 1 223334444443 35688999999999999986432 2
Q ss_pred cChHhHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCC---
Q psy14676 1251 ISTEMLNKVTVELAPLVSESDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTP--- 1327 (1827)
Q Consensus 1251 l~~~~~~~ll~~L~~ll~d~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~--- 1327 (1827)
...+.++.+...+....+..|.+-...++..|+.+ |. +..++.+..++.+
T Consensus 165 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~--------------------g~-------p~~i~~l~~~l~~~~~ 217 (336)
T d1lsha1 165 CPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA--------------------GQ-------PNSIKKIQRFLPGQGK 217 (336)
T ss_dssp CCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------TC-------GGGHHHHHTTSTTSSS
T ss_pred CcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhcc--------------------CC-------HhHHHHHHHHhccccc
Confidence 33445555655555566666666666666555543 21 3344555555532
Q ss_pred ----CCHhHHHHHHHHHhhhhhhhhhhhHHHHHHh
Q psy14676 1328 ----TSEEVKSAASYTLGSIAVGNLQQYVPFVLKE 1358 (1827)
Q Consensus 1328 ----~s~eVr~aAa~aLG~i~~~~l~~~LP~Il~~ 1358 (1827)
.+..+|.+|.+||.++.........+.+++.
T Consensus 218 ~~~~~~~~vR~aAi~Alr~~~~~~p~~v~~~l~~i 252 (336)
T d1lsha1 218 SLDEYSTRVQAEAIMALRNIAKRDPRKVQEIVLPI 252 (336)
T ss_dssp CCCCSCHHHHHHHHHTTTTGGGTCHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHhhhcCcHHHHHHHHHH
Confidence 2567999999999887665433333333333
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=95.04 E-value=0.0084 Score=65.01 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=26.5
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHhCCCCcChHhHHHHHHHhhhhcCCCChhHHHHHH
Q psy14676 1223 SFLRKNQRALKLSTLLLLDTLLVNYPSAISTEMLNKVTVELAPLVSESDLHIAQLTL 1279 (1827)
Q Consensus 1223 ~~Lrk~~r~lR~~al~aL~~L~~~~~~~l~~~~~~~ll~~L~~ll~d~D~~l~~~al 1279 (1827)
.+|.+..+++|..+.. . . + +..|.++++|.|..||..+.
T Consensus 49 ~~l~~p~~e~Ra~Aa~-------~-a---~-------~~~L~~Ll~D~d~~VR~~AA 87 (233)
T d1lrva_ 49 QYLADPFWERRAIAVR-------Y-S---P-------VEALTPLIRDSDEVVRRAVA 87 (233)
T ss_dssp GGTTCSSHHHHHHHHT-------T-S---C-------GGGGGGGTTCSSHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHh-------c-C---C-------HHHHHHHhcCCCHHHHHHHH
Confidence 3566777888865542 1 1 1 23457899999999998865
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=90.91 E-value=9.5 Score=42.44 Aligned_cols=160 Identities=11% Similarity=0.036 Sum_probs=96.4
Q ss_pred CChhHHHHHHHHHHHHHHhCCCccchhhHHhhhhhcccccCCCchhhHHHHHHHhcCCCCHhHHHHHHHHHhhhhhhhhh
Q psy14676 1270 SDLHIAQLTLTLLTSIAKIQPNALVEPAAASILPQIGRHTDLTSVADLKQVILNAFTPTSEEVKSAASYTLGSIAVGNLQ 1349 (1827)
Q Consensus 1270 ~D~~l~~~al~~L~~l~~~~~~~~~~~~i~~~lgeiG~~~~~~~~~~l~~~~l~~~~~~s~eVr~aAa~aLG~i~~~~l~ 1349 (1827)
++..++..++..+++++..+-.. ...+.-...+.+...+.+....++++-+..+..+||++|.+.
T Consensus 139 ~~~~l~~~a~La~gslv~~~c~~-------------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~-- 203 (336)
T d1lsha1 139 NRPILRKTAVLGYGSLVFRYCAN-------------TVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPN-- 203 (336)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTT-------------CSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGG--
T ss_pred cchhHHHHHHHHHHHHHHHHhcC-------------CCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCCHh--
Confidence 57889999999988887632100 001111123456677777888888899999999999998643
Q ss_pred hhHHHHHHhhhc--------CchhhHHHHHHHHHHHhhccccccchhhhhchHHHHHHHHhhhhcCCchhHHHHHHHHHH
Q psy14676 1350 QYVPFVLKEIEN--------QPKRQYLLLHSLKEIISWQSTSTSGVAQLQQFVPAIWAQLFLHCECQEEGTRNVVAECLG 1421 (1827)
Q Consensus 1350 ~~LP~Il~~i~~--------~~~~q~~~l~aL~Eii~~~~~s~~g~~~L~~~~~~i~~~L~~~~~~~~e~vR~~aAecLG 1421 (1827)
.+|.+...+.+ ....|-..++||+-+..+ .-+...+.+|+.+.+. ..+.++|.+|...|
T Consensus 204 -~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~---------~p~~v~~~l~~i~~n~--~e~~EvRiaA~~~l- 270 (336)
T d1lsha1 204 -SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR---------DPRKVQEIVLPIFLNV--AIKSELRIRSCIVF- 270 (336)
T ss_dssp -GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT---------CHHHHHHHHHHHHHCT--TSCHHHHHHHHHHH-
T ss_pred -HHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhc---------CcHHHHHHHHHHHcCC--CCChHHHHHHHHHH-
Confidence 34455544432 112344556666543220 1111224455555552 33344777665444
Q ss_pred HhhccCCC-cchHHHHHhhh-cCCHHHHHHHHHHHHHHhh
Q psy14676 1422 KLTLIDPS-NLLPRLQESLK-SNSALMRTTVLTAVKFTIS 1459 (1827)
Q Consensus 1422 kL~~~~p~-~~lP~L~~~l~-~~~~~~R~t~l~Alk~~~~ 1459 (1827)
-..+|. .++..+...+. .++..++..+.+.|+.+..
T Consensus 271 --m~t~P~~~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~ 308 (336)
T d1lsha1 271 --FESKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSR 308 (336)
T ss_dssp --HHTCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred --HhcCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 223454 56788888775 5688889889988888874
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.29 E-value=5.6 Score=43.33 Aligned_cols=159 Identities=12% Similarity=0.213 Sum_probs=104.2
Q ss_pred hhhHHHHhhcCCCCHhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCChHhhHHhhhHHHHHHHHHHhc--------
Q psy14676 285 LVSPPLIARFKEREENVKSDIFHAYMALLKGTRTFSPLTPSDPNQMDQEDSPLCLLSTQVPSLVKALQCQLR-------- 356 (1827)
Q Consensus 285 ~v~p~L~~~l~e~ee~VR~aa~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~Iv~~l~~~L~-------- 356 (1827)
.++..|+..+..=+++.|.++...|+.++++-.... ..+.+++... |.|+..++++..
T Consensus 69 d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~-------------~p~v~Yl~~~-~eil~~L~~gye~~eiAl~~ 134 (330)
T d1upka_ 69 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTR-------------TPTVEYICTQ-QNILFMLLKGYESPEIALNC 134 (330)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTB-------------CHHHHHHHTC-THHHHHHHHGGGSTTTHHHH
T ss_pred ChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCC-------------CccHHHHHcC-HHHHHHHHhhcCCcchhhhh
Confidence 567778888888899999999999999997532110 0122444433 445555554442
Q ss_pred -------------------------------cCCHhHHHHHHHHHHHHHHhCcc----cccCchhhHHHHHHHHhhhhhc
Q psy14676 357 -------------------------------EKSIRTRQDCLALLRELVQTLPG----CLAPSLPALIPDVTSVAEWDEE 401 (1827)
Q Consensus 357 -------------------------------d~~~~vR~a~~~ll~~L~~vl~~----~l~~~l~~Llp~i~~~L~~~~~ 401 (1827)
-++-++-..++..+.++...-+. .+..+...+.....++++
T Consensus 135 G~mLREcik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~---- 210 (330)
T d1upka_ 135 GIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLH---- 210 (330)
T ss_dssp HHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTT----
T ss_pred hHHHHHHHhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhc----
Confidence 23444555556666655554433 223444555555555542
Q ss_pred ccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhh--hhhhhhH--HhhhhhHHHhhcch
Q psy14676 402 EGLGGEGGGEGMDTEEEDGEDEGEDDNEYSDDDDMSWKVRRAAAKCLEAIIATRR--DLIGDMY--RLVSPPLIARFKER 477 (1827)
Q Consensus 402 ~~~~~~~~~~~~~~e~ed~~~~~~~~~e~~d~~d~~w~vr~~a~~~l~~l~~~~~--~~f~~~~--~~l~~~L~~~~~d~ 477 (1827)
..++-.|+.+++.|+.+.-... .....|+ ..-+..+|..++|.
T Consensus 211 ---------------------------------s~NYVtrRqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~ 257 (330)
T d1upka_ 211 ---------------------------------SENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK 257 (330)
T ss_dssp ---------------------------------CSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS
T ss_pred ---------------------------------CCchHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc
Confidence 2367899999999999995555 4555566 34577888999999
Q ss_pred hhhhHHHHHHHHHHHHh
Q psy14676 478 EENVKSDIFHAYMALLK 494 (1827)
Q Consensus 478 ~~~Vr~~a~~~l~~L~~ 494 (1827)
..+|+.+||+.++=++.
T Consensus 258 sk~Iq~EAFhVFKvFVA 274 (330)
T d1upka_ 258 SRNIQFEAFHVFKVFVA 274 (330)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhhHhhhhhc
Confidence 99999999988777764
|
| >d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Exportin HEAT-like repeat domain: Exportin-1 (Xpo1, Crm1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.33 E-value=15 Score=40.19 Aligned_cols=161 Identities=11% Similarity=0.155 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCChhhhhhHHHHHHHHHHHHH-h--cCCCHHHH-HHHHHHHHHHHhhccCCCCchhHHHHH
Q psy14676 7 QLRDISSIGLKTVISELPLGSNALAANVCRRITGKLSTAI-E--KQEDVSVQ-LEALDILSDLLSRFGALLPSFHFVILT 82 (1827)
Q Consensus 7 ~~Rdi~~~~Lktvi~~lp~~~~~~~~~v~~~L~P~Ll~~l-~--~~~~~~v~-~~al~iL~~l~~~~~~~l~~~~~~il~ 82 (1827)
.+|.+..--||.+-.-+.... -...|++.++|.|++.+ . +...|..| .+.|.+++.++.+.+..+.+..+.+++
T Consensus 41 ~lr~iKkeiLkLi~t~i~~~~--d~~~v~~~~i~pl~~~vL~DY~~~~p~~R~~eVL~l~~~ii~kl~~~~~~~v~~I~~ 118 (321)
T d1w9ca_ 41 SMRTVKRETLKLISGWVSRSN--DPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFD 118 (321)
T ss_dssp HHHHHHHHHHHHHHHHHTTCS--CHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHhCchhhccHhHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 467676667777777665543 23457888889888766 1 11234555 588999999999999998888777777
Q ss_pred HHhhh----cCC---CCHHHHHHHHHHHHHHHHhhchh-------HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Q psy14676 83 ALLPQ----LSS---PRQAVRKRTIVALSHLVMSCNLQ-------LYTKLIDFLLEGLTTNKSTSTNRTYIQCFAAICRQ 148 (1827)
Q Consensus 83 ~ll~~----L~~---~~~~VRk~Ai~aL~~l~~~~~~~-------~~~~l~~~ll~~L~~~~~~~~r~~ai~~l~~la~~ 148 (1827)
.++.. +.. .-|..|..=..-|..+...|.+. .+..+++.++.+++. +.+++....++++..+...
T Consensus 119 ~VFe~Tl~MI~~df~~yPehR~~ff~LL~~i~~~cf~~ll~lp~~qf~~vidsi~wa~kH-~~~~V~~~gL~~l~~ll~n 197 (321)
T d1w9ca_ 119 AVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKH-TMRNVADTGLQILFTLLQN 197 (321)
T ss_dssp HHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhChHHHHHHHHHHHHHHHHCHHHHHcCCHHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHH
Confidence 77655 443 46999999888888888887544 455667777777654 5688888888888877653
Q ss_pred hc-------hhhHHhHHHHHHHHHhhccc
Q psy14676 149 AG-------HRFAEHIERVMPLILKYSRE 170 (1827)
Q Consensus 149 ~~-------~~~~p~l~~i~p~l~~~~~~ 170 (1827)
.. ..+..|+-.++.-++..+.|
T Consensus 198 ~~~~~~~~~~F~~~y~~~il~~if~vltD 226 (321)
T d1w9ca_ 198 VAQEEAAAQSFYQTYFCDILQHIFSVVTD 226 (321)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhhChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 21 23455666666666666654
|