Psyllid ID: psy14719

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Protein Sequence
MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVFVFSEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP
Secondary Structure (PSIPRED)
ccHHHHHHHHccEEEEEccccccccHHHHHHcccccccccccccEEEEEEEccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHccHHHHccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHcccEEEEEEcccccccHHHHHHccccccHHcccccEEEEEEEccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHcHccEEEEEEcccHcHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MTAKQLELETGCKImvrgkgsmrdkkkeeanrgkpnweHLSEELHVLISVEDTENRAELKLARAVEEVQKLLvpqaegedELKKRQLMELAIINGTYRDNNAKVLAAAVFVFseeanrgkpnweHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP
Flexible Loop (DISEMBL)
mtakqleletgckimvrgkgsmrdkkkeeanrgkpnwehlSEELHVLISVEDTENRAELKLARAVEEVQKLlvpqaegedelkKRQLMELAIINGTYRDNNAKVLAAAVFVFSEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEevqkllvp
Low Complexity Region (SEG)
MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVFVFSEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP
Disordered region (IsUnstruct)
******************************************ELHVLISVE*******LKLARAVEEVQKLLV***********RQLMELAIINGTYRDNNAKVLAAAVFVFSEEANRGKPNWEHLSEELHVLISVE***********************
Disordered Region (DISOPRED)
*TAKQL*LETGCKIMVRGK************************LHVLISVEDTENRAELKLARAVEEVQKLLVPQAEGEDELKKRQLMELAIING***********************GKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP
Disordered Region (DISEMBL)
MTAKQLELETGCKIMVRG*****************NWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVFVFSEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP
Disordered Region (DISPRO)
*TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTY*********************GKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVFVFSEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	160	2.2.26 [Sep-21-2011]
O01367	405	Protein held out wings OS	yes	N/A	0.662	0.261	0.877	2e-49
Q6P104	319	Protein quaking-B OS=Dani	yes	N/A	0.737	0.369	0.760	4e-46
Q32NN2	341	Protein quaking-A OS=Xeno	N/A	N/A	0.737	0.346	0.768	6e-46
Q91XU1	341	Protein quaking OS=Rattus	yes	N/A	0.675	0.316	0.814	7e-46
Q5W9D5	341	Protein quaking OS=Sus sc	yes	N/A	0.675	0.316	0.814	8e-46
Q9QYS9	341	Protein quaking OS=Mus mu	yes	N/A	0.675	0.316	0.814	8e-46
Q96PU8	341	Protein quaking OS=Homo s	yes	N/A	0.675	0.316	0.814	8e-46
Q5W9D6	341	Protein quaking OS=Equus	yes	N/A	0.675	0.316	0.814	8e-46
Q7JJZ8	341	Protein quaking OS=Felis	N/A	N/A	0.675	0.316	0.814	8e-46
Q9GMY1	341	Protein quaking OS=Canis	yes	N/A	0.675	0.316	0.814	8e-46

>sp|O01367|HOW_DROME Protein held out wings OS=Drosophila melanogaster GN=how PE=1 SV=1

 Score =  194 bits (493), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 93/106 (87%), Positives = 100/106 (94%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
           MTAKQLE ETGCKIMVRGKGSMRDKKKE+ANRGKPNWEHLS++LHVLI+VEDTENRA +K
Sbjct: 163 MTAKQLEQETGCKIMVRGKGSMRDKKKEDANRGKPNWEHLSDDLHVLITVEDTENRATVK 222

Query: 61  LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLA 106
           LA+AV EVQKLLVPQAEGEDELKKRQLMELAIINGTYRD  AK +A
Sbjct: 223 LAQAVAEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDTTAKSVA 268

Required for integrin-mediated cell-adhesion in wing blade. Vital role in steroid regulation of muscle development and to control heart rate. Required during embryogenesis, in late stages of somatic muscle development, for myotube migration and during metamorphosis for muscle reorganization.
Drosophila melanogaster (taxid: 7227)

>sp|Q6P104|QKIB_DANRE Protein quaking-B OS=Danio rerio GN=qkib PE=2 SV=1

 Score =  183 bits (465), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 92/121 (76%), Positives = 101/121 (83%), Gaps = 3/121 (2%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
           +TAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL+E+LHVLI+VED++NRAE+K
Sbjct: 108 LTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDSQNRAEIK 167

Query: 61  LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVFVFSEEANRGK 120
           L RAVEEV+KLLVP AEGED LKK QLMELAI+NGTYRD N K  A A   FS  A    
Sbjct: 168 LKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALA---FSLAATAQA 224

Query: 121 P 121
           P
Sbjct: 225 P 225

RNA-binding protein that plays a central role in myelinization. Binds to the 5'-NACUAAY-N(1,20)-UAAY-3' RNA core sequence. Acts by regulating pre-mRNA splicing, mRNA export, mRNA stability and protein translation. Required to protect and promote stability of mRNAs which promotes oligodendrocyte differentiation. Participates in mRNA transport by regulating the nuclear export of MBP mRNA. Also involved in regulation of mRNA splicing of some pre-mRNA. Acts as a translational repressor.

Danio rerio (taxid: 7955)

>sp|Q32NN2|QKIA_XENLA Protein quaking-A OS=Xenopus laevis GN=qki-a PE=1 SV=2

 Score =  182 bits (463), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 93/121 (76%), Positives = 100/121 (82%), Gaps = 3/121 (2%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
           +TAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL+E+LHVLI+VED +NRAELK
Sbjct: 109 LTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELK 168

Query: 61  LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVFVFSEEANRGK 120
           L RAVEEV+KLLVP AEGED LKK QLMELAI+NGTYRD N K  A A   FS  A    
Sbjct: 169 LKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANLKSPALA---FSLAATGQA 225

Query: 121 P 121
           P
Sbjct: 226 P 226

RNA-binding protein that plays a central role in myelinization. Binds to the 5'-NACUAAY-N(1,20)-UAAY-3' RNA core sequence. Acts by regulating pre-mRNA splicing, mRNA export, mRNA stability and protein translation. Required to protect and promote stability of mRNAs which promotes oligodendrocyte differentiation. Participates in mRNA transport by regulating the nuclear export of MBP mRNA. Also involved in regulation of mRNA splicing of some pre-mRNA. Acts as a translational repressor (By similarity). Essential for notochord development.

Xenopus laevis (taxid: 8355)

>sp|Q91XU1|QKI_RAT Protein quaking OS=Rattus norvegicus GN=Qki PE=1 SV=2

 Score =  182 bits (462), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 88/108 (81%), Positives = 96/108 (88%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
           +TAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL+E+LHVLI+VED +NRAE+K
Sbjct: 108 LTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIK 167

Query: 61  LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 108
           L RAVEEV+KLLVP AEGED LKK QLMELAI+NGTYRD N K  A A
Sbjct: 168 LKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALA 215

RNA-binding protein that plays a central role in myelinization. Binds to the 5'-NACUAAY-N(1,20)-UAAY-3' RNA core sequence. Acts by regulating pre-mRNA splicing, mRNA export, mRNA stability and protein translation. Required to protect and promote stability of mRNAs such as MBP and CDKN1B which promotes oligodendrocyte differentiation. Participates in mRNA transport by regulating the nuclear export of MBP mRNA. Also involved in regulation of mRNA splicing of MAG pre-mRNA. Acts as a translational repressor.

Rattus norvegicus (taxid: 10116)

>sp|Q5W9D5|QKI_PIG Protein quaking OS=Sus scrofa GN=QKI PE=2 SV=1

 Score =  182 bits (462), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 88/108 (81%), Positives = 96/108 (88%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
           +TAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL+E+LHVLI+VED +NRAE+K
Sbjct: 108 LTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIK 167

Query: 61  LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 108
           L RAVEEV+KLLVP AEGED LKK QLMELAI+NGTYRD N K  A A
Sbjct: 168 LKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALA 215

RNA-binding protein that plays a central role in myelinization. Binds to the 5'-NACUAAY-N(1,20)-UAAY-3' RNA core sequence. Acts by regulating pre-mRNA splicing, mRNA export, mRNA stability and protein translation. Required to protect and promote stability of mRNAs such as MBP and CDKN1B which promotes oligodendrocyte differentiation. Participates in mRNA transport by regulating the nuclear export of MBP mRNA. Also involved in regulation of mRNA splicing of MAG pre-mRNA. Acts as a translational repressor.

Sus scrofa (taxid: 9823)

>sp|Q9QYS9|QKI_MOUSE Protein quaking OS=Mus musculus GN=Qki PE=1 SV=1

 Score =  182 bits (462), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 88/108 (81%), Positives = 96/108 (88%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
           +TAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL+E+LHVLI+VED +NRAE+K
Sbjct: 108 LTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIK 167

Query: 61  LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 108
           L RAVEEV+KLLVP AEGED LKK QLMELAI+NGTYRD N K  A A
Sbjct: 168 LKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALA 215

RNA-binding protein that plays a central role in myelinization. Also required for visceral endoderm function and blood vessel development. Binds to the 5'-NACUAAY-N(1,20)-UAAY-3' RNA core sequence. Acts by regulating pre-mRNA splicing, mRNA export, mRNA stability and protein translation, as well as cellular processes including apoptosis, cell cycle, glial cell fate and development. Required to protect and promote stability of mRNAs such as MBP and CDKN1B which promotes oligodendrocyte differentiation. Participates in mRNA transport by regulating the nuclear export of MBP mRNA. Isoform 1 is involved in regulation of mRNA splicing of MAG pre-mRNA by acting as a negative regulator of MAG exon 12 alternative splicing. Isoform 3 can induce apoptosis, while heterodimerization with other isoforms results in nuclear translocation of isoform 3 and suppression of apoptosis. Isoform 4 acts as a translational repressor for GLI1. May also play a role in smooth muscle development.

Mus musculus (taxid: 10090)

>sp|Q96PU8|QKI_HUMAN Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1

 Score =  182 bits (462), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 88/108 (81%), Positives = 96/108 (88%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
           +TAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL+E+LHVLI+VED +NRAE+K
Sbjct: 108 LTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIK 167

Query: 61  LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 108
           L RAVEEV+KLLVP AEGED LKK QLMELAI+NGTYRD N K  A A
Sbjct: 168 LKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALA 215

RNA-binding protein that plays a central role in myelinization. Binds to the 5'-NACUAAY-N(1,20)-UAAY-3' RNA core sequence. Acts by regulating pre-mRNA splicing, mRNA export, mRNA stability and protein translation. Required to protect and promote stability of mRNAs such as MBP and CDKN1B. Regulator of oligodendrocyte differentiation and maturation in the brain that may play a role in myelin and oligodendrocyte dysfunction in schizophrenia. Participates in mRNA transport by regulating the nuclear export of MBP mRNA. Also involved in regulation of mRNA splicing of MAG pre-mRNA. Acts as a translational repressor.

Homo sapiens (taxid: 9606)

>sp|Q5W9D6|QKI_HORSE Protein quaking OS=Equus caballus GN=QKI PE=2 SV=1

 Score =  182 bits (462), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 88/108 (81%), Positives = 96/108 (88%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
           +TAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL+E+LHVLI+VED +NRAE+K
Sbjct: 108 LTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIK 167

Query: 61  LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 108
           L RAVEEV+KLLVP AEGED LKK QLMELAI+NGTYRD N K  A A
Sbjct: 168 LKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALA 215

RNA-binding protein that plays a central role in myelinization. Binds to the 5'-NACUAAY-N(1,20)-UAAY-3' RNA core sequence. Acts by regulating pre-mRNA splicing, mRNA export, mRNA stability and protein translation. Required to protect and promote stability of mRNAs such as MBP and CDKN1B which promotes oligodendrocyte differentiation. Participates in mRNA transport by regulating the nuclear export of MBP mRNA. Also involved in regulation of mRNA splicing of MAG pre-mRNA. Acts as a translational repressor.

Equus caballus (taxid: 9796)

>sp|Q7JJZ8|QKI_FELCA Protein quaking OS=Felis catus GN=QKI PE=2 SV=1

 Score =  182 bits (462), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 88/108 (81%), Positives = 96/108 (88%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
           +TAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL+E+LHVLI+VED +NRAE+K
Sbjct: 108 LTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIK 167

Query: 61  LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 108
           L RAVEEV+KLLVP AEGED LKK QLMELAI+NGTYRD N K  A A
Sbjct: 168 LKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALA 215

RNA-binding protein that plays a central role in myelinization. Binds to the 5'-NACUAAY-N(1,20)-UAAY-3' RNA core sequence. Acts by regulating pre-mRNA splicing, mRNA export, mRNA stability and protein translation. Required to protect and promote stability of mRNAs such as MBP and CDKN1B which promotes oligodendrocyte differentiation. Participates in mRNA transport by regulating the nuclear export of MBP mRNA. Also involved in regulation of mRNA splicing of MAG pre-mRNA. Acts as a translational repressor.

Felis catus (taxid: 9685)

>sp|Q9GMY1|QKI_CANFA Protein quaking OS=Canis familiaris GN=QKI PE=2 SV=1

 Score =  182 bits (462), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 88/108 (81%), Positives = 96/108 (88%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
           +TAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL+E+LHVLI+VED +NRAE+K
Sbjct: 108 LTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIK 167

Query: 61  LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 108
           L RAVEEV+KLLVP AEGED LKK QLMELAI+NGTYRD N K  A A
Sbjct: 168 LKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALA 215

RNA-binding protein that plays a central role in myelinization. Binds to the 5'-NACUAAY-N(1,20)-UAAY-3' RNA core sequence. Acts by regulating pre-mRNA splicing, mRNA export, mRNA stability and protein translation. Required to protect and promote stability of mRNAs such as MBP and CDKN1B which promotes oligodendrocyte differentiation. Participates in mRNA transport by regulating the nuclear export of MBP mRNA. Also involved in regulation of mRNA splicing of MAG pre-mRNA. Acts as a translational repressor.

Canis familiaris (taxid: 9615)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
345489230	300	PREDICTED: protein held out wings-like [	0.668	0.356	0.887	1e-48
340721938	314	PREDICTED: protein held out wings-like i	0.668	0.340	0.887	1e-48
350412878	335	PREDICTED: protein held out wings-like [	0.668	0.319	0.887	1e-48
442620396	418	held out wings, isoform F [Drosophila me	0.706	0.270	0.849	2e-48
312382593	393	hypothetical protein AND_04678 [Anophele	0.712	0.290	0.826	2e-48
307192068	315	Protein held out wings [Harpegnathos sal	0.675	0.342	0.879	2e-48
307181228	214	Protein held out wings [Camponotus flori	0.681	0.509	0.871	2e-48
332024057	215	Protein held out wings [Acromyrmex echin	0.681	0.506	0.871	2e-48
194743074	417	GF18066 [Drosophila ananassae] gi|190627	0.675	0.258	0.861	4e-48
383857591	335	PREDICTED: protein held out wings-like i	0.675	0.322	0.870	5e-48

>gi|345489230|ref|XP_001604343.2| PREDICTED: protein held out wings-like [Nasonia vitripennis]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 95/107 (88%), Positives = 102/107 (95%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
           MTAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL++ELHVL++VEDTENRA LK
Sbjct: 65  MTAKQLEQETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLTDELHVLLTVEDTENRATLK 124

Query: 61  LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAA 107
           LARAVEEV+KLLVPQA+GEDELKKRQLMELAIINGTYRD+N KV AA
Sbjct: 125 LARAVEEVKKLLVPQADGEDELKKRQLMELAIINGTYRDSNTKVAAA 171

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340721938|ref|XP_003399370.1| PREDICTED: protein held out wings-like isoform 2 [Bombus terrestris]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 95/107 (88%), Positives = 102/107 (95%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
           MTAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL++ELHVL++VEDTENRA LK
Sbjct: 100 MTAKQLEQETGCKIMVRGKGSMRDKKKEELNRGKPNWEHLTDELHVLLTVEDTENRATLK 159

Query: 61  LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAA 107
           LARAVEEV+KLLVPQA+GEDELKKRQLMELAIINGTYRD+N KV AA
Sbjct: 160 LARAVEEVKKLLVPQADGEDELKKRQLMELAIINGTYRDSNTKVAAA 206

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350412878|ref|XP_003489798.1| PREDICTED: protein held out wings-like [Bombus impatiens]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 95/107 (88%), Positives = 102/107 (95%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
           MTAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL++ELHVL++VEDTENRA LK
Sbjct: 100 MTAKQLEQETGCKIMVRGKGSMRDKKKEELNRGKPNWEHLTDELHVLLTVEDTENRATLK 159

Query: 61  LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAA 107
           LARAVEEV+KLLVPQA+GEDELKKRQLMELAIINGTYRD+N KV AA
Sbjct: 160 LARAVEEVKKLLVPQADGEDELKKRQLMELAIINGTYRDSNTKVAAA 206

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442620396|ref|NP_001262822.1| held out wings, isoform F [Drosophila melanogaster] gi|440217732|gb|AGB96202.1| held out wings, isoform F [Drosophila melanogaster]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 96/113 (84%), Positives = 103/113 (91%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
           MTAKQLE ETGCKIMVRGKGSMRDKKKE+ANRGKPNWEHLS++LHVLI+VEDTENRA +K
Sbjct: 163 MTAKQLEQETGCKIMVRGKGSMRDKKKEDANRGKPNWEHLSDDLHVLITVEDTENRATVK 222

Query: 61  LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVFVFS 113
           LA+AV EVQKLLVPQAEGEDELKKRQLMELAIINGTYRD  AK +AA   V S
Sbjct: 223 LAQAVAEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDTTAKSVAAFSCVGS 275

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312382593|gb|EFR27999.1| hypothetical protein AND_04678 [Anopheles darlingi]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 95/115 (82%), Positives = 104/115 (90%), Gaps = 1/115 (0%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
           MTAKQLE ETGCKIMVRGKGSMRDKKKE+ANRGKPNWEHLS++LHVLI+VEDTENRA +K
Sbjct: 108 MTAKQLEQETGCKIMVRGKGSMRDKKKEDANRGKPNWEHLSDDLHVLITVEDTENRASIK 167

Query: 61  LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVFVFSEE 115
           L RA+EEV+KLLVP AEGEDELKKRQLMELAIINGTYRD+ AK  AAA F F  +
Sbjct: 168 LKRALEEVKKLLVPHAEGEDELKKRQLMELAIINGTYRDSTAKA-AAAEFTFDPQ 221

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307192068|gb|EFN75427.1| Protein held out wings [Harpegnathos saltator]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 95/108 (87%), Positives = 102/108 (94%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
           MTAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL++ELHVL++VEDTENRA LK
Sbjct: 58  MTAKQLEQETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLTDELHVLLTVEDTENRATLK 117

Query: 61  LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 108
           LARAVEEV+KLLVP A+GEDELKKRQLMELAIINGTYRD+N KV AAA
Sbjct: 118 LARAVEEVKKLLVPVADGEDELKKRQLMELAIINGTYRDSNTKVAAAA 165

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307181228|gb|EFN68925.1| Protein held out wings [Camponotus floridanus]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 95/109 (87%), Positives = 102/109 (93%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
           MTAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL++ELHVL++VEDTENRA LK
Sbjct: 1   MTAKQLEQETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLTDELHVLLTVEDTENRATLK 60

Query: 61  LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAAV 109
           LARAVEEV+KLLVP A+GEDELKKRQLMELAIINGTYRD+N KV AAA 
Sbjct: 61  LARAVEEVKKLLVPVADGEDELKKRQLMELAIINGTYRDSNTKVAAAAA 109

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024057|gb|EGI64274.1| Protein held out wings [Acromyrmex echinatior]

 Score =  196 bits (498), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 95/109 (87%), Positives = 102/109 (93%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
           MTAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL++ELHVL++VEDTENRA LK
Sbjct: 1   MTAKQLEQETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLTDELHVLLTVEDTENRATLK 60

Query: 61  LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAAV 109
           LARAVEEV+KLLVP A+GEDELKKRQLMELAIINGTYRD+N KV AAA 
Sbjct: 61  LARAVEEVKKLLVPVADGEDELKKRQLMELAIINGTYRDSNTKVAAAAA 109

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194743074|ref|XP_001954025.1| GF18066 [Drosophila ananassae] gi|190627062|gb|EDV42586.1| GF18066 [Drosophila ananassae]

 Score =  196 bits (497), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 93/108 (86%), Positives = 102/108 (94%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
           MTAKQLE ETGCKIMVRGKGSMRDKKKE+ANRGKPNWEHLS++LHVLI+VEDTENRA++K
Sbjct: 176 MTAKQLEQETGCKIMVRGKGSMRDKKKEDANRGKPNWEHLSDDLHVLITVEDTENRAKVK 235

Query: 61  LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 108
           LA+AV EVQKLLVPQAEGEDELKKRQLMELAIINGTYRD  AK +A +
Sbjct: 236 LAQAVAEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDTTAKAVAVS 283

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857591|ref|XP_003704288.1| PREDICTED: protein held out wings-like isoform 1 [Megachile rotundata]

 Score =  195 bits (496), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 94/108 (87%), Positives = 102/108 (94%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
           MTAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL++ELHVL++VEDTENRA LK
Sbjct: 100 MTAKQLEQETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLTDELHVLLTVEDTENRATLK 159

Query: 61  LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 108
           LARAVEEV+KLLVP A+GEDELKKRQLMELAIINGTYRD+N KV AA+
Sbjct: 160 LARAVEEVKKLLVPVADGEDELKKRQLMELAIINGTYRDSNTKVAAAS 207

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
FB|FBgn0264491	405	how "held out wings" [Drosophi	0.662	0.261	0.877	4.4e-45
ZFIN|ZDB-GENE-040426-1462	319	qki2 "QKI, KH domain containin	0.675	0.338	0.814	1.5e-42
UNIPROTKB|F1N7N1	315	QKI "Protein quaking" [Bos tau	0.675	0.342	0.814	1.9e-42
UNIPROTKB|Q5W9D7	341	QKI "Protein quaking" [Bos tau	0.675	0.316	0.814	1.9e-42
UNIPROTKB|F1PLY2	310	QKI "Protein quaking" [Canis l	0.675	0.348	0.814	1.9e-42
UNIPROTKB|F1PX61	339	QKI "Protein quaking" [Canis l	0.675	0.318	0.814	1.9e-42
UNIPROTKB|J9NVZ6	286	QKI "Protein quaking" [Canis l	0.675	0.377	0.814	1.9e-42
UNIPROTKB|Q9GMY1	341	QKI "Protein quaking" [Canis l	0.675	0.316	0.814	1.9e-42
UNIPROTKB|F5GYM3	170	QKI "Protein quaking" [Homo sa	0.675	0.635	0.814	1.9e-42
UNIPROTKB|Q96PU8	341	QKI "Protein quaking" [Homo sa	0.675	0.316	0.814	1.9e-42

FB|FBgn0264491 how "held out wings" [Drosophila melanogaster (taxid:7227)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 93/106 (87%), Positives = 100/106 (94%)

Query:     1 MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
             MTAKQLE ETGCKIMVRGKGSMRDKKKE+ANRGKPNWEHLS++LHVLI+VEDTENRA +K
Sbjct:   163 MTAKQLEQETGCKIMVRGKGSMRDKKKEDANRGKPNWEHLSDDLHVLITVEDTENRATVK 222

Query:    61 LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLA 106
             LA+AV EVQKLLVPQAEGEDELKKRQLMELAIINGTYRD  AK +A
Sbjct:   223 LAQAVAEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDTTAKSVA 268

GO:0007525 "somatic muscle development" evidence=IMP

GO:0005634 "nucleus" evidence=IC;NAS;IDA

GO:0008016 "regulation of heart contraction" evidence=IMP

GO:0007517 "muscle organ development" evidence=IMP

GO:0007521 "muscle cell fate determination" evidence=IDA

GO:0007155 "cell adhesion" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0007475 "apposition of dorsal and ventral imaginal disc-derived wing surfaces" evidence=IMP

GO:0003729 "mRNA binding" evidence=NAS;IDA

GO:0007498 "mesoderm development" evidence=IEP

GO:0030154 "cell differentiation" evidence=TAS

GO:0005737 "cytoplasm" evidence=NAS

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IMP

GO:0008347 "glial cell migration" evidence=IMP

GO:0008366 "axon ensheathment" evidence=IMP

GO:0007438 "oenocyte development" evidence=IMP

GO:0003730 "mRNA 3'-UTR binding" evidence=IDA

GO:0008078 "mesodermal cell migration" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IMP

GO:0007284 "spermatogonial cell division" evidence=IMP

GO:0030718 "germ-line stem cell maintenance" evidence=IMP

ZFIN|ZDB-GENE-040426-1462 qki2 "QKI, KH domain containing, RNA binding 2" [Danio rerio (taxid:7955)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 88/108 (81%), Positives = 97/108 (89%)

Query:     1 MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
             +TAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL+E+LHVLI+VED++NRAE+K
Sbjct:   108 LTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDSQNRAEIK 167

Query:    61 LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 108
             L RAVEEV+KLLVP AEGED LKK QLMELAI+NGTYRD N K  A A
Sbjct:   168 LKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALA 215

GO:0003723 "RNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

UNIPROTKB|F1N7N1 QKI "Protein quaking" [Bos taurus (taxid:9913)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 88/108 (81%), Positives = 96/108 (88%)

Query:     1 MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
             +TAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL+E+LHVLI+VED +NRAE+K
Sbjct:    82 LTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIK 141

Query:    61 LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 108
             L RAVEEV+KLLVP AEGED LKK QLMELAI+NGTYRD N K  A A
Sbjct:   142 LKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALA 189

GO:0042759 "long-chain fatty acid biosynthetic process" evidence=IEA

GO:0042692 "muscle cell differentiation" evidence=IEA

GO:0042552 "myelination" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q5W9D7 QKI "Protein quaking" [Bos taurus (taxid:9913)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 88/108 (81%), Positives = 96/108 (88%)

Query:     1 MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
             +TAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL+E+LHVLI+VED +NRAE+K
Sbjct:   108 LTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIK 167

Query:    61 LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 108
             L RAVEEV+KLLVP AEGED LKK QLMELAI+NGTYRD N K  A A
Sbjct:   168 LKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALA 215

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F1PLY2 QKI "Protein quaking" [Canis lupus familiaris (taxid:9615)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 88/108 (81%), Positives = 96/108 (88%)

Query:     1 MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
             +TAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL+E+LHVLI+VED +NRAE+K
Sbjct:    82 LTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIK 141

Query:    61 LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 108
             L RAVEEV+KLLVP AEGED LKK QLMELAI+NGTYRD N K  A A
Sbjct:   142 LKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALA 189

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F1PX61 QKI "Protein quaking" [Canis lupus familiaris (taxid:9615)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 88/108 (81%), Positives = 96/108 (88%)

Query:     1 MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
             +TAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL+E+LHVLI+VED +NRAE+K
Sbjct:   111 LTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIK 170

Query:    61 LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 108
             L RAVEEV+KLLVP AEGED LKK QLMELAI+NGTYRD N K  A A
Sbjct:   171 LKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALA 218

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|J9NVZ6 QKI "Protein quaking" [Canis lupus familiaris (taxid:9615)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 88/108 (81%), Positives = 96/108 (88%)

Query:     1 MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
             +TAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL+E+LHVLI+VED +NRAE+K
Sbjct:    53 LTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIK 112

Query:    61 LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 108
             L RAVEEV+KLLVP AEGED LKK QLMELAI+NGTYRD N K  A A
Sbjct:   113 LKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALA 160

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q9GMY1 QKI "Protein quaking" [Canis lupus familiaris (taxid:9615)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 88/108 (81%), Positives = 96/108 (88%)

Query:     1 MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
             +TAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL+E+LHVLI+VED +NRAE+K
Sbjct:   108 LTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIK 167

Query:    61 LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 108
             L RAVEEV+KLLVP AEGED LKK QLMELAI+NGTYRD N K  A A
Sbjct:   168 LKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALA 215

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F5GYM3 QKI "Protein quaking" [Homo sapiens (taxid:9606)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 88/108 (81%), Positives = 96/108 (88%)

Query:     1 MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
             +TAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL+E+LHVLI+VED +NRAE+K
Sbjct:    53 LTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIK 112

Query:    61 LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 108
             L RAVEEV+KLLVP AEGED LKK QLMELAI+NGTYRD N K  A A
Sbjct:   113 LKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALA 160

GO:0003723 "RNA binding" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0042552 "myelination" evidence=IEA

GO:0042692 "muscle cell differentiation" evidence=IEA

GO:0042759 "long-chain fatty acid biosynthetic process" evidence=IEA

UNIPROTKB|Q96PU8 QKI "Protein quaking" [Homo sapiens (taxid:9606)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 88/108 (81%), Positives = 96/108 (88%)

Query:     1 MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
             +TAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL+E+LHVLI+VED +NRAE+K
Sbjct:   108 LTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIK 167

Query:    61 LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAA 108
             L RAVEEV+KLLVP AEGED LKK QLMELAI+NGTYRD N K  A A
Sbjct:   168 LKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDANIKSPALA 215

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0042552 "myelination" evidence=IEA

GO:0042692 "muscle cell differentiation" evidence=IEA

GO:0042759 "long-chain fatty acid biosynthetic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5W9D5	QKI_PIG	No assigned EC number	0.8148	0.675	0.3167	yes	N/A
Q5W9D6	QKI_HORSE	No assigned EC number	0.8148	0.675	0.3167	yes	N/A
Q5W9D7	QKI_BOVIN	No assigned EC number	0.8148	0.675	0.3167	yes	N/A
Q9YH18	QKI_CHICK	No assigned EC number	0.7520	0.7375	0.3470	yes	N/A
Q9GMY1	QKI_CANFA	No assigned EC number	0.8148	0.675	0.3167	yes	N/A
Q6P104	QKIB_DANRE	No assigned EC number	0.7603	0.7375	0.3699	yes	N/A
Q91XU1	QKI_RAT	No assigned EC number	0.8148	0.675	0.3167	yes	N/A
Q9QYS9	QKI_MOUSE	No assigned EC number	0.8148	0.675	0.3167	yes	N/A
O01367	HOW_DROME	No assigned EC number	0.8773	0.6625	0.2617	yes	N/A
Q96PU8	QKI_HUMAN	No assigned EC number	0.8148	0.675	0.3167	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	160
cd02395	120	cd02395, SF1_like-KH, Splicing factor 1 (SF1) K ho	2e-39
COG5176	269	COG5176, MSL5, Splicing factor (branch point bindi	3e-08
cd02395	120	cd02395, SF1_like-KH, Splicing factor 1 (SF1) K ho	2e-07

>gnl|CDD|239088 cd02395, SF1_like-KH, Splicing factor 1 (SF1) K homology RNA-binding domain (KH)

 Score =  129 bits (326), Expect = 2e-39
 Identities = 57/99 (57%), Positives = 69/99 (69%), Gaps = 5/99 (5%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
            T KQLE ETG KI +RGKGSM+D KKEE  R  P + HL+E LHVLI+ E      E  
Sbjct: 26  NTLKQLEKETGAKISIRGKGSMKDGKKEEELR-GPKYAHLNEPLHVLITAETP---PEEA 81

Query: 61  LARAVEEVQKLLVPQAEG-EDELKKRQLMELAIINGTYR 98
           LA+AVE +++LL P  EG  DELK+ QL ELA++NGTYR
Sbjct: 82  LAKAVEAIEELLKPAIEGGNDELKREQLRELALLNGTYR 120

Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. Length = 120

>gnl|CDD|227503 COG5176, MSL5, Splicing factor (branch point binding protein) [RNA processing and modification]

 Score = 50.7 bits (121), Expect = 3e-08
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 8/101 (7%)

Query: 2   TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLI--SVEDTENRAEL 59
           T KQLE  +  KI +RG GS   K+ + ++    + ++    LH LI    ED   R   
Sbjct: 175 TLKQLERISRAKIAIRGSGS--VKEGKISSDTPESLKNAEAVLHCLIEADSEDKICRLIK 232

Query: 60  KLARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDN 100
               A+ E ++   P  EG+++LK+ QL  LA +NGT R +
Sbjct: 233 SQLNAIREARR--NP--EGQNDLKRFQLRWLAHLNGTLRAD 269

Length = 269

>gnl|CDD|239088 cd02395, SF1_like-KH, Splicing factor 1 (SF1) K homology RNA-binding domain (KH)

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 4/47 (8%)

Query: 114 EEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP 160
           EE  R  P + HL+E LHVLI+ E      E  LA+AVE +++LL P
Sbjct: 53  EEELR-GPKYAHLNEPLHVLITAETP---PEEALAKAVEAIEELLKP 95

Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. Length = 120

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	160
KOG1588|consensus	259		100.0
cd02395	120	SF1_like-KH Splicing factor 1 (SF1) K homology RNA	99.95
KOG0119|consensus	554		99.92
KOG1588|consensus	259		99.89
COG5176	269	MSL5 Splicing factor (branch point binding protein	99.72
cd02395	120	SF1_like-KH Splicing factor 1 (SF1) K homology RNA	98.87
KOG0119|consensus	554		94.91
cd02393	61	PNPase_KH Polynucleotide phosphorylase (PNPase) K	93.83
PF00013	60	KH_1: KH domain syndrome, contains KH motifs.; Int	93.04
cd02396	65	PCBP_like_KH K homology RNA-binding domain, PCBP_l	91.69
smart00322	69	KH K homology RNA-binding domain.	90.55
PF13014	43	KH_3: KH domain	89.51
cd02394	62	vigilin_like_KH K homology RNA-binding domain_vigi	88.41
cd00105	64	KH-I K homology RNA-binding domain, type I. KH bin	87.93
KOG1960|consensus	531		85.76
TIGR03665	172	arCOG04150 arCOG04150 universal archaeal KH domain	84.9
PRK13763	180	putative RNA-processing protein; Provisional	80.62
PRK13763	180	putative RNA-processing protein; Provisional	80.57

>KOG1588|consensus

Probab=100.00  E-value=1.9e-36  Score=253.48  Aligned_cols=101  Identities=58%  Similarity=0.881  Sum_probs=96.0

Q ss_pred             CcHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcccCCccch
Q psy14719          1 MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVPQAEGED   80 (160)
Q Consensus         1 ~TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P~~e~~n   80 (160)
                      ||+||||++|||||+||||||+||..||+++||+|+|+||++||||+|++++++++|+.||.+|+++|+++|+|.+++.+
T Consensus       118 nSlkrLe~eTgCki~IrGrgSmrD~~KEE~lR~~p~yeHL~epLHVlIe~~~p~~ea~~rl~~AleeI~klL~P~~e~~d  197 (259)
T KOG1588|consen  118 NSLKRLEEETGCKIMIRGRGSMRDKAKEEELRGDPGYEHLNEPLHVLIETEAPPAEAYARLAYALEEIKKLLVPDHEDED  197 (259)
T ss_pred             chHHHHHHHHCCeEEEecCCcccchHHHHHhhcCcchHHhCCCcEEEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCch
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999998777


Q ss_pred             HHHHHHHHHHHHHhCcccCCCcc
Q psy14719         81 ELKKRQLMELAIINGTYRDNNAK  103 (160)
Q Consensus        81 elK~~QL~ELA~lNGtlRd~~~~  103 (160)
                        |++||+|||++|||+..+..+
T Consensus       198 --k~~QL~ELa~lngt~~~~~~~  218 (259)
T KOG1588|consen  198 --KREQLRELAILNGTYLRSESR  218 (259)
T ss_pred             --HHHHHHHHhhcCCcccccccc
Confidence              999999999999996555543

>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH)

Probab=99.95  E-value=7.1e-28  Score=182.32  Aligned_cols=94  Identities=62%  Similarity=0.905  Sum_probs=86.5

Q ss_pred             CcHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcccCCcc-c
Q psy14719          1 MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVPQAEG-E   79 (160)
Q Consensus         1 ~TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P~~e~-~   79 (160)
                      .|+|+||++|||+|.|||+||+|+++++.++++ |.|+|++|||||+|+|.++   |..++++|+++|+.+|.+..++ .
T Consensus        26 ~tiK~i~~eTg~kI~Irg~gs~~~~~~~~~~~~-~~~~~~~eplhV~I~a~~~---~~e~~~~A~~~I~~ll~~~~~~~~  101 (120)
T cd02395          26 NTLKQLEKETGAKISIRGKGSMKDGKKEEELRG-PKYAHLNEPLHVLITAETP---PEEALAKAVEAIEELLKPAIEGGN  101 (120)
T ss_pred             hHHHHHHHHHCCEEEEecCcccccccccccccC-cccccCCCCcEEEEEeCCc---HHHHHHHHHHHHHHHhccCCCccc
Confidence            489999999999999999999999999988877 8899999999999999884   2347999999999999998776 9


Q ss_pred             hHHHHHHHHHHHHHhCccc
Q psy14719         80 DELKKRQLMELAIINGTYR   98 (160)
Q Consensus        80 nelK~~QL~ELA~lNGtlR   98 (160)
                      |++|+.||++||++|||||
T Consensus       102 ~~~k~~ql~~la~~nGt~~  120 (120)
T cd02395         102 DELKREQLRELALLNGTYR  120 (120)
T ss_pred             hHHHHHHHHHHHHhcccCC
Confidence            9999999999999999996

Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.

>KOG0119|consensus

Probab=99.92  E-value=5.9e-26  Score=203.26  Aligned_cols=99  Identities=39%  Similarity=0.630  Sum_probs=86.3

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCC-cCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcc---cCCc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNW-EHLSEELHVLISVEDTENRAELKLARAVEEVQKLLV---PQAE   77 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~-~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~---P~~e   77 (160)
                      |||+||+||||||+||||||+|+|+. .  ..++.| ...+|||||||+|++.+     +|++|++.|++|+.   .++|
T Consensus       165 TqK~lE~etgAKI~IRGkgSvkEgk~-~--~~d~~~~~~~~epLH~~Isadt~e-----ki~~Ai~vienli~~av~~~e  236 (554)
T KOG0119|consen  165 TQKRLERETGAKIAIRGKGSVKEGKG-R--SDDLSYIPKENEPLHCLISADTQE-----KIKKAIAVIENLIQSAVSVPE  236 (554)
T ss_pred             HHHHHHHHhCCeEEEecccccccccc-C--CcccccccccccceeEEEecchHH-----HHHHHHHHHHHHHHhhccCcc
Confidence            89999999999999999999999982 1  122333 24689999999999877     79999999999996   7889


Q ss_pred             cchHHHHHHHHHHHHHhCcccCCCccchhhh
Q psy14719         78 GEDELKKRQLMELAIINGTYRDNNAKVLAAA  108 (160)
Q Consensus        78 ~~nelK~~QL~ELA~lNGtlRd~~~~~~~~~  108 (160)
                      ++|++|+.||+|||-+|||+|+++.+.|..|
T Consensus       237 ~~n~l~~~Qlrela~lNgt~r~~d~~~c~~c  267 (554)
T KOG0119|consen  237 GQNDLKRLQLRELARLNGTLRDDDNRACRNC  267 (554)
T ss_pred             ccccccHHHHHHHHHhCCCCCcccccccccc
Confidence            9999999999999999999999998777754

>KOG1588|consensus

Probab=99.89  E-value=1.7e-24  Score=181.50  Aligned_cols=83  Identities=42%  Similarity=0.645  Sum_probs=76.8

Q ss_pred             HHHHHhhhcccCCccchHHHHHHH---HHHHHH-hCcccCCCccchhhhhccchhhhhcCCCCcccccccceeeEEeeCc
Q psy14719         64 AVEEVQKLLVPQAEGEDELKKRQL---MELAII-NGTYRDNNAKVLAAAVFVFSEEANRGKPNWEHLSEELHVLISVEDT  139 (160)
Q Consensus        64 Av~~I~klL~P~~e~~nelK~~QL---~ELA~l-NGtlRd~~~~~~~~~~f~~~ee~~~g~p~~~hL~~~lhv~i~~~~~  139 (160)
                      -+|||++||+|.+   |.+|+.|.   +.+.|+ +||+||+.           |||.+||||+|+||++||||+|+|++|
T Consensus       105 ~fNFVGRILGPrG---nSlkrLe~eTgCki~IrGrgSmrD~~-----------KEE~lR~~p~yeHL~epLHVlIe~~~p  170 (259)
T KOG1588|consen  105 KFNFVGRILGPRG---NSLKRLEEETGCKIMIRGRGSMRDKA-----------KEEELRGDPGYEHLNEPLHVLIETEAP  170 (259)
T ss_pred             CCccccccccCCc---chHHHHHHHHCCeEEEecCCcccchH-----------HHHHhhcCcchHHhCCCcEEEEEEeCC
Confidence            5899999999998   99998885   566677 99999995           588889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccCC
Q psy14719        140 ENRAELKLARAVEEVQKLLVP  160 (160)
Q Consensus       140 ~~~~~~~l~~a~~~~~~~l~p  160 (160)
                      +++||+||++|+++|+|||+|
T Consensus       171 ~~ea~~rl~~AleeI~klL~P  191 (259)
T KOG1588|consen  171 PAEAYARLAYALEEIKKLLVP  191 (259)
T ss_pred             HHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999998

>COG5176 MSL5 Splicing factor (branch point binding protein) [RNA processing and modification]

Probab=99.72  E-value=3.9e-18  Score=140.34  Aligned_cols=96  Identities=30%  Similarity=0.411  Sum_probs=70.2

Q ss_pred             CcHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcccCCccch
Q psy14719          1 MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVPQAEGED   80 (160)
Q Consensus         1 ~TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P~~e~~n   80 (160)
                      .|||+||+.|+|||+|||+||+|+++-.....  +.--+..++||+||+++.....|.  +-+.+.-+..-....|+|+|
T Consensus       174 ~Tlk~le~~s~akIaIRG~gsvKegk~ssd~p--~~~~N~e~~lhcLI~adsedki~~--~ik~~~n~I~~a~~~PeGqn  249 (269)
T COG5176         174 STLKQLERISRAKIAIRGSGSVKEGKISSDTP--ESLKNAEAVLHCLIEADSEDKICR--LIKSQLNAIREARRNPEGQN  249 (269)
T ss_pred             chHHHHHHHhCCeEEEecccccccCcccccCc--hhhhhhHHhHHHHhhcchhhhHHH--HHHHHHHHHHHHhcCCcccc
Confidence            49999999999999999999999998543321  111235689999999976552221  22222222233345678999


Q ss_pred             HHHHHHHHHHHHHhCcccCC
Q psy14719         81 ELKKRQLMELAIINGTYRDN  100 (160)
Q Consensus        81 elK~~QL~ELA~lNGtlRd~  100 (160)
                      ++|+-||++||-+|||+|++
T Consensus       250 DlkR~qlr~la~lngtlr~d  269 (269)
T COG5176         250 DLKRFQLRWLAHLNGTLRAD  269 (269)
T ss_pred             hHHHHHHHHHHHhcceecCC
Confidence            99999999999999999974

>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH)

Probab=98.87  E-value=1.4e-09  Score=82.51  Aligned_cols=88  Identities=39%  Similarity=0.597  Sum_probs=65.9

Q ss_pred             EEEEeeCcHHHHHHHHHHHHHHHhhhcccCCccchHHHHHHHH---HHHHH-hCcccCCCccchhhhhccchhhhhcCCC
Q psy14719         46 VLISVEDTENRAELKLARAVEEVQKLLVPQAEGEDELKKRQLM---ELAII-NGTYRDNNAKVLAAAVFVFSEEANRGKP  121 (160)
Q Consensus        46 VlI~a~~~~~~a~~kl~~Av~~I~klL~P~~e~~nelK~~QL~---ELA~l-NGtlRd~~~~~~~~~~f~~~ee~~~g~p  121 (160)
                      |+|-.+..+         .+++|..+|+|-+   ..+|+.|-.   .+.+. .|+.++..+           |+.+++ |
T Consensus         4 i~iP~~~~P---------~~N~IG~IIGPgG---~tiK~i~~eTg~kI~Irg~gs~~~~~~-----------~~~~~~-~   59 (120)
T cd02395           4 VYIPVKQYP---------KYNFVGLILGPRG---NTLKQLEKETGAKISIRGKGSMKDGKK-----------EEELRG-P   59 (120)
T ss_pred             EEcCcccCC---------CCCeeEEEECCCC---hHHHHHHHHHCCEEEEecCcccccccc-----------cccccC-c
Confidence            566666555         5889999999988   677766542   23333 667776643           556677 9


Q ss_pred             CcccccccceeeEEeeCcHHHHHHHHHHHHHHHHhccCC
Q psy14719        122 NWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP  160 (160)
Q Consensus       122 ~~~hL~~~lhv~i~~~~~~~~~~~~l~~a~~~~~~~l~p  160 (160)
                      .|+|+++||||+|++.+|   |...+..|++.|+.+|.|
T Consensus        60 ~~~~~~eplhV~I~a~~~---~~e~~~~A~~~I~~ll~~   95 (120)
T cd02395          60 KYAHLNEPLHVLITAETP---PEEALAKAVEAIEELLKP   95 (120)
T ss_pred             ccccCCCCcEEEEEeCCc---HHHHHHHHHHHHHHHhcc
Confidence            999999999999999988   567778888888888764

Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.

>KOG0119|consensus

Probab=94.91  E-value=0.0076  Score=55.53  Aligned_cols=83  Identities=22%  Similarity=0.386  Sum_probs=54.9

Q ss_pred             eEEEEeeCcHHHHHHHHHHHHHHHhhhcccCCccchHHHHHHHHH---HHHH-hCcccCCCccchhhhhccchhhhhcCC
Q psy14719         45 HVLISVEDTENRAELKLARAVEEVQKLLVPQAEGEDELKKRQLME---LAII-NGTYRDNNAKVLAAAVFVFSEEANRGK  120 (160)
Q Consensus        45 HVlI~a~~~~~~a~~kl~~Av~~I~klL~P~~e~~nelK~~QL~E---LA~l-NGtlRd~~~~~~~~~~f~~~ee~~~g~  120 (160)
                      -|+|-++..+         -++||.=|++|.+   |.+|+.+-.-   ++|. .||..+.-              ....|
T Consensus       141 Kv~IPvke~P---------d~NFvGLiiGPRG---~TqK~lE~etgAKI~IRGkgSvkEgk--------------~~~~d  194 (554)
T KOG0119|consen  141 KVYIPVKEFP---------DINFVGLIIGPRG---NTQKRLERETGAKIAIRGKGSVKEGK--------------GRSDD  194 (554)
T ss_pred             ceecchhhcC---------CcceeEEEecCCc---cHHHHHHHHhCCeEEEeccccccccc--------------cCCcc
Confidence            4666655544         5789999999998   7777666433   3333 45555442              12233


Q ss_pred             CCccc-ccccceeeEEeeCcHHHHHHHHHHHHHHHHhcc
Q psy14719        121 PNWEH-LSEELHVLISVEDTENRAELKLARAVEEVQKLL  158 (160)
Q Consensus       121 p~~~h-L~~~lhv~i~~~~~~~~~~~~l~~a~~~~~~~l  158 (160)
                      ++|-- -+|+||++|+++     .+.+|..|.+-|+.++
T Consensus       195 ~~~~~~~~epLH~~Isad-----t~eki~~Ai~vienli  228 (554)
T KOG0119|consen  195 LSYIPKENEPLHCLISAD-----TQEKIKKAIAVIENLI  228 (554)
T ss_pred             cccccccccceeEEEecc-----hHHHHHHHHHHHHHHH
Confidence            44433 459999999987     4678888998888876

>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH)

Probab=93.83  E-value=0.17  Score=33.55  Aligned_cols=39  Identities=33%  Similarity=0.378  Sum_probs=28.7

Q ss_pred             CcHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHH
Q psy14719          1 MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEV   68 (160)
Q Consensus         1 ~TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I   68 (160)
                      .|.|+||++|||+|.|--     +                   =-|.|++.+.+     .++.|.++|
T Consensus        22 ~~ik~I~~~tg~~I~i~~-----~-------------------g~v~I~G~~~~-----~v~~A~~~I   60 (61)
T cd02393          22 KTIKKIIEETGVKIDIED-----D-------------------GTVYIAASDKE-----AAEKAKKMI   60 (61)
T ss_pred             hHHHHHHHHHCCEEEeCC-----C-------------------CEEEEEeCCHH-----HHHHHHHHh
Confidence            378999999999998742     0                   14889996555     477777766

PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.

>PF00013 KH_1: KH domain syndrome, contains KH motifs

Probab=93.04  E-value=0.32  Score=31.30  Aligned_cols=40  Identities=33%  Similarity=0.388  Sum_probs=28.7

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHH
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEV   68 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I   68 (160)
                      ++|+|+++|||+|.|...                     ++.-.|.|++ +++     .+..|.+.|
T Consensus        21 ~i~~I~~~t~~~I~i~~~---------------------~~~~~v~I~G-~~~-----~v~~A~~~I   60 (60)
T PF00013_consen   21 NIKEIEEETGVKIQIPDD---------------------DERDIVTISG-SPE-----QVEKAKKMI   60 (60)
T ss_dssp             HHHHHHHHHTSEEEEEST---------------------TEEEEEEEEE-SHH-----HHHHHHHHH
T ss_pred             cHHHhhhhcCeEEEEcCC---------------------CCcEEEEEEe-CHH-----HHHHHHhhC
Confidence            579999999999999553                     0233788888 555     466676654

; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....

>cd02396 PCBP_like_KH K homology RNA-binding domain, PCBP_like

Probab=91.69  E-value=0.48  Score=31.36  Aligned_cols=17  Identities=47%  Similarity=0.546  Sum_probs=14.8

Q ss_pred             cHHhhhHHhCCeEEEec
Q psy14719          2 TAKQLELETGCKIMVRG   18 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRG   18 (160)
                      +.++|+++|||+|.|.-
T Consensus        21 ~i~~i~~~tga~I~i~~   37 (65)
T cd02396          21 TIKEIREETGAKIRVSK   37 (65)
T ss_pred             HHHHHHHHHCCEEEEcC
Confidence            57899999999999943

Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are represented here, in tandem arrangement, followed by a large spacer region, with the third domain near the C-terminal end of the protein. The poly(C) binding proteins (PCBPs) can be divided into two groups, hnRNPs K/J and the alphaCPs, which share a triple KH domain configuration and poly(C) binding specificity. They play roles in mRNA stabilization, translational activation, and translational silencing. Nova-1 and Nova-2 are nuclear RNA-binding proteins that regulate splicing. This group also contains plant proteins that seem to have two tandem repeat arrrangements, like Hen4, a protein that plays a role in AGAMOUS (AG) pre-mRNA processing and important step in plant development. In general, KH binds single-stran

>smart00322 KH K homology RNA-binding domain

Probab=90.55  E-value=0.73  Score=28.84  Aligned_cols=44  Identities=39%  Similarity=0.461  Sum_probs=29.9

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhh
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKL   71 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~kl   71 (160)
                      +++.|++.|||+|.+.+.++                    ..-.|.|.+. ..     .+..|...|.+.
T Consensus        24 ~i~~i~~~~~~~i~~~~~~~--------------------~~~~v~i~g~-~~-----~v~~a~~~i~~~   67 (69)
T smart00322       24 TIKKIEEETGVKIDIPEDGS--------------------EERVVEITGP-PE-----NVEKAAELILEI   67 (69)
T ss_pred             HHHHHHHHHCCEEEECCCCC--------------------CccEEEEEcC-HH-----HHHHHHHHHHHH
Confidence            67999999999999976443                    2335777775 23     355666666544

>PF13014 KH_3: KH domain

Probab=89.51  E-value=0.27  Score=30.02  Aligned_cols=17  Identities=41%  Similarity=0.530  Sum_probs=15.9

Q ss_pred             cHHhhhHHhCCeEEEec
Q psy14719          2 TAKQLELETGCKIMVRG   18 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRG   18 (160)
                      |+++|+++|||+|.|--
T Consensus        12 ~I~~I~~~tg~~I~i~~   28 (43)
T PF13014_consen   12 TIKEIREETGAKIQIPP   28 (43)
T ss_pred             HHHHHHHHhCcEEEECC
Confidence            78999999999999977

>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like

Probab=88.41  E-value=1.1  Score=28.86  Aligned_cols=41  Identities=29%  Similarity=0.393  Sum_probs=28.8

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHH
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEV   68 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I   68 (160)
                      +.++|+++|||+|.|-..+                    +.+=.|.|++. .+     .+..|..+|
T Consensus        21 ~i~~i~~~~g~~I~i~~~~--------------------~~~~~v~I~G~-~~-----~v~~A~~~i   61 (62)
T cd02394          21 NIRKIMEETGVKIRFPDPG--------------------SKSDTITITGP-KE-----NVEKAKEEI   61 (62)
T ss_pred             cHHHHHHHhCCEEEcCCCC--------------------CCCCEEEEEcC-HH-----HHHHHHHHh
Confidence            6899999999999997643                    11226888886 33     466676665

The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.

>cd00105 KH-I K homology RNA-binding domain, type I

Probab=87.93  E-value=1.4  Score=28.11  Aligned_cols=20  Identities=45%  Similarity=0.620  Sum_probs=17.1

Q ss_pred             cHHhhhHHhCCeEEEecCCC
Q psy14719          2 TAKQLELETGCKIMVRGKGS   21 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS   21 (160)
                      ++++|+++|||+|.|...++
T Consensus        21 ~i~~I~~~s~~~I~i~~~~~   40 (64)
T cd00105          21 TIKEIREETGAKIKIPDSGS   40 (64)
T ss_pred             HHHHHHHHHCCEEEEcCCCC
Confidence            67999999999999987543

KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that belong to different protein folds, but they share a single KH motif. The KH motif is folded into a beta alpha alpha beta unit. In addition to the core, type II KH domains (e.g. ribosomal protein S3) include N-terminal extension and type I KH domains (e.g. hnRNP K) contain C-terminal extension.

>KOG1960|consensus

Probab=85.76  E-value=0.59  Score=42.68  Aligned_cols=62  Identities=18%  Similarity=0.177  Sum_probs=45.7

Q ss_pred             CcHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcccC
Q psy14719          1 MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVPQ   75 (160)
Q Consensus         1 ~TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P~   75 (160)
                      +||.-.|-||+.+.+||||||.+---    ..|    ..-+||+-++|+....+.     +.+|..++..++.-+
T Consensus       235 ~~La~~~ie~~i~~l~~Gr~SG~iEP----~~G----~EsnEPMYI~i~h~~~~g-----~~~A~r~~~nl~~~v  296 (531)
T KOG1960|consen  235 LTLALQEIESWINPLIDGRRSGRREP----NEG----NESNEPMYIFSTHGNGNG-----ENGAPRRKWNLEEKV  296 (531)
T ss_pred             hhhhhhhhhhhhhhhhccccccccCc----ccc----cccCCceeEEeecCCchh-----hccchhHHHhHHHHH
Confidence            46778899999999999999986321    112    235899999999887763     667777776666544

>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein

Probab=84.90  E-value=1.9  Score=34.19  Aligned_cols=43  Identities=35%  Similarity=0.332  Sum_probs=31.9

Q ss_pred             CcHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhccc
Q psy14719          1 MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP   74 (160)
Q Consensus         1 ~TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P   74 (160)
                      .|.+.||..|||+|.|-|+                         .|.|++ +++     .++.|...|..|+..
T Consensus       109 ~t~~~ie~~t~~~i~i~~~-------------------------~v~i~G-~~~-----~~~~A~~~i~~li~~  151 (172)
T TIGR03665       109 KTRRIIEELTGVSISVYGK-------------------------TVGIIG-DPE-----QVQIAREAIEMLIEG  151 (172)
T ss_pred             HHHHHHHHHHCCeEEEcCC-------------------------EEEEEC-CHH-----HHHHHHHHHHHHHcC
Confidence            3789999999999998541                         477888 455     477777777777743

This family of proteins is universal among the 41 archaeal genomes analyzed in and is not observed outside of the archaea. The proteins contain a single KH domain (pfam00013) which is likely to confer the ability to bind RNA.

>PRK13763 putative RNA-processing protein; Provisional

Probab=80.62  E-value=4.4  Score=32.38  Aligned_cols=45  Identities=27%  Similarity=0.296  Sum_probs=34.2

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEE---eeCcHHHHHHHHHHHHHHHhhhccc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLIS---VEDTENRAELKLARAVEEVQKLLVP   74 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~---a~~~~~~a~~kl~~Av~~I~klL~P   74 (160)
                      |.|.|+++|||+|.|--.                       .=.|.|.   +.|+.     .+.+|.++|..+...
T Consensus        24 ~Ik~I~e~tg~~I~i~~~-----------------------~g~V~I~~~~~~d~~-----~i~kA~~~I~ai~~g   71 (180)
T PRK13763         24 TKKEIEERTGVKLEIDSE-----------------------TGEVIIEPTDGEDPL-----AVLKARDIVKAIGRG   71 (180)
T ss_pred             HHHHHHHHHCcEEEEECC-----------------------CCeEEEEeCCCCCHH-----HHHHHHHHHHHHhcC
Confidence            679999999999999763                       0156676   44555     588899999888874

>PRK13763 putative RNA-processing protein; Provisional

Probab=80.57  E-value=3.8  Score=32.77  Aligned_cols=41  Identities=37%  Similarity=0.404  Sum_probs=29.7

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLV   73 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~   73 (160)
                      |.|.||..|||+|.|-|+                         .|.|++ +++     .+..|.+.|..|+.
T Consensus       116 ~~k~ie~~t~~~i~i~~~-------------------------~v~i~G-~~~-----~~~~A~~~I~~li~  156 (180)
T PRK13763        116 TRRIIEELTGVDISVYGK-------------------------TVAIIG-DPE-----QVEIAREAIEMLIE  156 (180)
T ss_pred             HHHHHHHHHCcEEEEcCC-------------------------EEEEEe-CHH-----HHHHHHHHHHHHHc
Confidence            789999999999998541                         166676 444     46667777776663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	160
2bl5_A	140	Solution Structure Of The Kh-Qua2 Region Of The Xen		4e-45
2bl5_A	140	Solution Structure Of The Kh-Qua2 Region Of The Xen		4e-17
1k1g_A	131	Structural Basis For Recognition Of The Intron Bran		4e-08

>pdb|2BL5|A Chain A, Solution Structure Of The Kh-Qua2 Region Of The Xenopus Star-Gsg Quaking Protein Length = 140

Iteration: 1
 Score =  176 bits (447), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 87/106 (82%), Positives = 95/106 (89%)
Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
           +TAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL+E+LHVLI+VED +NRAELK
Sbjct: 28  LTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELK 87
Query: 61  LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLA 106
           L RAVEEV+KLLVP AEGED LKK +LMELAI+NGTYRD N K  A
Sbjct: 88  LKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDANLKSPA 133

>pdb|2BL5|A Chain A, Solution Structure Of The Kh-Qua2 Region Of The Xenopus Star-Gsg Quaking Protein Length = 140

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 39/47 (82%), Positives = 44/47 (93%)
Query: 114 EEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP 160
           EE NRGKPNWEHL+E+LHVLI+VED +NRAELKL RAVEEV+KLLVP
Sbjct: 55  EEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVP 101

>pdb|1K1G|A Chain A, Structural Basis For Recognition Of The Intron Branch Site Rna By Splicing Factor 1 Length = 131

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 16/108 (14%)
Query: 2   TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHL---SEELHVLISVEDTENRAE 58
           T K +E E   KIM+RGKGS++     E   G+ + + L    E LH L++    EN   
Sbjct: 34  TLKNIEKECNAKIMIRGKGSVK-----EGKVGRKDGQMLPGEDEPLHALVTANTMEN--- 85
Query: 59  LKLARAVEEVQKLL---VPQAEGEDELKKRQLMELAIINGTYRDNNAK 103
             + +AVE+++ +L   +   E +++L+K QL ELA +NGT R+++ +
Sbjct: 86  --VKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDNR 131

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	160
2bl5_A	140	MGC83862 protein, quaking protein; STAR proteins,	2e-42
2bl5_A	140	MGC83862 protein, quaking protein; STAR proteins,	1e-11
1k1g_A	131	SF1-BO isoform; splicing, branch point sequence, p	2e-32
1k1g_A	131	SF1-BO isoform; splicing, branch point sequence, p	5e-05
2yqr_A	119	KIAA0907 protein; structure genomics, KH domain, s	6e-14
2yqr_A	119	KIAA0907 protein; structure genomics, KH domain, s	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1 Length = 140

 Score =  137 bits (345), Expect = 2e-42
 Identities = 86/103 (83%), Positives = 94/103 (91%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
           +TAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL+E+LHVLI+VED +NRAELK
Sbjct: 28  LTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELK 87

Query: 61  LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAK 103
           L RAVEEV+KLLVP AEGED LKK +LMELAI+NGTYRD N K
Sbjct: 88  LKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDANLK 130

>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1 Length = 140

 Score = 58.0 bits (140), Expect = 1e-11
 Identities = 39/48 (81%), Positives = 44/48 (91%)

Query: 113 SEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP 160
            EE NRGKPNWEHL+E+LHVLI+VED +NRAELKL RAVEEV+KLLVP
Sbjct: 54  KEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVP 101

>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 131

 Score =  111 bits (278), Expect = 2e-32
 Identities = 34/106 (32%), Positives = 58/106 (54%), Gaps = 10/106 (9%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
            T K +E E   KIM+RGKGS+++ K     +         E LH L++    E      
Sbjct: 33  NTLKNIEKECNAKIMIRGKGSVKEGKVGR--KDGQMLPGEDEPLHALVTANTME-----N 85

Query: 61  LARAVEEVQKLL---VPQAEGEDELKKRQLMELAIINGTYRDNNAK 103
           + +AVE+++ +L   +   E +++L+K QL ELA +NGT R+++ +
Sbjct: 86  VKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDNR 131

>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 131

 Score = 39.8 bits (93), Expect = 5e-05
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 5/48 (10%)

Query: 113 SEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP 160
            +   +         E LH L++    E      + +AVE+++ +L  
Sbjct: 57  GKVGRKDGQMLPGEDEPLHALVTANTME-----NVKKAVEQIRNILKQ 99

>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 63.4 bits (154), Expect = 6e-14
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 13/86 (15%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
              + +++ETG K+ +RGKGS              +     E +++ IS    E      
Sbjct: 39  SYLQHIQIETGAKVFLRGKGS--------GCIEPASGREAFEPMYIYISHPKPEG----- 85

Query: 61  LARAVEEVQKLLVPQAEGEDELKKRQ 86
           LA A +  + LL            + 
Sbjct: 86  LAAAKKLCENLLQTVHAEYSRFVNQI 111

>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 37.6 bits (87), Expect = 3e-04
 Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 5/45 (11%)

Query: 116 ANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP 160
                 +     E +++ IS    E      LA A +  + LL  
Sbjct: 60  GCIEPASGREAFEPMYIYISHPKPEG-----LAAAKKLCENLLQT 99

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 38/140 (27%)

Query: 11  GCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVE-EVQ 69
            CKI++    + R K+  +         H+S + H  +++   E +  L L + ++   Q
Sbjct: 265 SCKILL----TTRFKQVTDFLSAA-TTTHISLD-HHSMTLTPDEVK-SL-LLKYLDCRPQ 316

Query: 70  KLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVFVFSEEANRGKPNWEHL-SE 128
            L  P+     E+       L+II            A ++    +       NW+H+  +
Sbjct: 317 DL--PR-----EVLTTNPRRLSII------------AESI---RDGLATWD-NWKHVNCD 353

Query: 129 ELHVLISV-----EDTENRA 143
           +L  +I       E  E R 
Sbjct: 354 KLTTIIESSLNVLEPAEYRK 373

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	160
2bl5_A	140	MGC83862 protein, quaking protein; STAR proteins,	100.0
1k1g_A	131	SF1-BO isoform; splicing, branch point sequence, p	99.95
2bl5_A	140	MGC83862 protein, quaking protein; STAR proteins,	99.61
2yqr_A	119	KIAA0907 protein; structure genomics, KH domain, s	99.58
1k1g_A	131	SF1-BO isoform; splicing, branch point sequence, p	98.38
2opv_A	85	KHSRP protein; KH domain, RNA binding protein, KSR	96.79
1x4m_A	94	FAR upstream element binding protein 1; KH domain,	96.32
1dtj_A	76	RNA-binding neurooncological ventral antigen 2; KH	95.93
2yqr_A	119	KIAA0907 protein; structure genomics, KH domain, s	95.76
2hh2_A	107	KH-type splicing regulatory protein; KH-RNA bindin	95.62
2hh3_A	106	KH-type splicing regulatory protein; KH-RNA bindin	95.24
1ec6_A	87	RNA-binding protein NOVA-2; KH domain, alpha-beta	95.07
1x4n_A	92	FAR upstream element binding protein 1; KH domain,	94.7
2dgr_A	83	Ring finger and KH domain-containing protein 1; st	94.59
1zzk_A	82	Heterogeneous nuclear ribonucleoprotein K; KH domi	94.34
1we8_A	104	Tudor and KH domain containing protein; structural	94.2
2p2r_A	76	Poly(RC)-binding protein 2; protein-DNA complex, R	94.11
1wvn_A	82	Poly(RC)-binding protein 1; KH domain, RNA binding	94.02
1j5k_A	89	Heterogeneous nuclear ribonucleoprotein K; single-	93.82
2cte_A	94	Vigilin; K homology type I domain, RNA-binding, ce	93.38
2axy_A	73	Poly(RC)-binding protein 2; protein-DNA complex, D	93.27
1vig_A	71	Vigilin; RNA-binding protein, ribonucleoprotein; N	92.61
2ctl_A	97	Vigilin; K homology type I domain, RNA-binding, ce	92.41
3krm_A	163	Insulin-like growth factor 2 mRNA-binding protein	92.18
2ctm_A	95	Vigilin; K homology type I domain, RNA-binding, ce	91.9
2ctk_A	104	Vigilin; K homology type I domain, RNA-binding, ce	91.52
2jvz_A	164	KH type-splicing, FAR upstream element-binding pro	88.87
2jvz_A	164	KH type-splicing, FAR upstream element-binding pro	88.59
1j4w_A	174	FUSE binding protein; single-stranded DNA binding	87.66
2ctj_A	95	Vigilin; K homology type I domain, RNA-binding, ce	86.84
2anr_A	178	Neuro-oncological ventral antigen 1; protein-RNA c	85.66
2anr_A	178	Neuro-oncological ventral antigen 1; protein-RNA c	83.2
1tua_A	191	Hypothetical protein APE0754; structural genomics,	80.68

>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1

Probab=100.00  E-value=9e-38  Score=240.92  Aligned_cols=107  Identities=81%  Similarity=1.164  Sum_probs=102.2

Q ss_pred             CcHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcccCCccch
Q psy14719          1 MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVPQAEGED   80 (160)
Q Consensus         1 ~TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P~~e~~n   80 (160)
                      +|+|+||++|||||+||||||+|++++++.++|+|+|+|++|||||+|+|++++++|+++|++|+++|+++|.|+++++|
T Consensus        28 ~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~~~~~~l~~A~~~I~~lL~p~~e~~d  107 (140)
T 2bl5_A           28 LTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVPAAEGED  107 (140)
T ss_dssp             HHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHHHHHHHHHHHHHHHSSCCSSSSS
T ss_pred             chHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchhhHHHHHHHHHHHHHHHCCCCCcchh
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCcccCCCccchhh
Q psy14719         81 ELKKRQLMELAIINGTYRDNNAKVLAA  107 (160)
Q Consensus        81 elK~~QL~ELA~lNGtlRd~~~~~~~~  107 (160)
                      ++|+.||+|||++|||||++....++.
T Consensus       108 e~K~~QL~eLA~lNGt~r~~~~~~~~~  134 (140)
T 2bl5_A          108 SLKKMKLMELAILNGTYRDANLKSPAL  134 (140)
T ss_dssp             HHHHHHHTGGGSSSTTTSGGGGSCTTC
T ss_pred             HHHHHHHHHHHHhcCCcCCCcccchhh
Confidence            999999999999999999998765554

>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1

Probab=99.95  E-value=8.1e-29  Score=188.67  Aligned_cols=95  Identities=37%  Similarity=0.588  Sum_probs=81.0

Q ss_pred             CcHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhccc---CCc
Q psy14719          1 MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP---QAE   77 (160)
Q Consensus         1 ~TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P---~~e   77 (160)
                      +|+|+||++|||||.|||+||+|+++++ ...|. .|.|+++||||+|+|++.+     ++++|+++|+.+|.+   +|+
T Consensus        33 ~tiK~Iq~eTG~kI~IrgkgS~~~~~~~-~~~~~-~~~~~~e~lhV~I~a~~~e-----~~~~A~~~I~~ll~~~~~~p~  105 (131)
T 1k1g_A           33 NTLKNIEKECNAKIMIRGKGSVKEGKVG-RKDGQ-MLPGEDEPLHALVTANTME-----NVKKAVEQIRNILKQGIETPE  105 (131)
T ss_dssp             HHHHHHHHHSCCEEEEEESTTSSSSSSS-SCCCC-CSCCSSCCEEEEEEESSHH-----HHHHHHHHHHHHHTTTTSCCT
T ss_pred             HHHHHHHHHHCCeEEecCCccccccccc-ccccc-cccccCCCeEEEEEECCHH-----HHHHHHHHHHHHHhccCCCCc
Confidence            3899999999999999999999998765 22344 4788999999999998876     699999999999964   789


Q ss_pred             cchHHHHHHHHHHHHHhCcccCCCc
Q psy14719         78 GEDELKKRQLMELAIINGTYRDNNA  102 (160)
Q Consensus        78 ~~nelK~~QL~ELA~lNGtlRd~~~  102 (160)
                      ++|++|+.||+|||++|||||+++.
T Consensus       106 ~~d~~k~~Ql~eLa~~nGt~r~~~~  130 (131)
T 1k1g_A          106 DQNDLRKMQLRELARLNGTLREDDN  130 (131)
T ss_dssp             TSSGGGGGGGHHHHHHHTCCC----
T ss_pred             cHHHHHHHHHHHHHHHcCcCCCcCC
Confidence            9999999999999999999999753

>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1

Probab=99.61  E-value=6.5e-17  Score=124.43  Aligned_cols=83  Identities=55%  Similarity=0.810  Sum_probs=70.9

Q ss_pred             HHHHHhhhcccCCccchHHHHHHHHHHH---HH-hCcccCCCccchhhhhccchhhhhcCCCCcccccccceeeEEeeCc
Q psy14719         64 AVEEVQKLLVPQAEGEDELKKRQLMELA---II-NGTYRDNNAKVLAAAVFVFSEEANRGKPNWEHLSEELHVLISVEDT  139 (160)
Q Consensus        64 Av~~I~klL~P~~e~~nelK~~QL~ELA---~l-NGtlRd~~~~~~~~~~f~~~ee~~~g~p~~~hL~~~lhv~i~~~~~  139 (160)
                      .+++|..+|+|-+   +.+|+.|-.--+   +. .||.++.           ++|+.++|+|+|+|+++||||+|++.++
T Consensus        15 ~~NfiG~IiGPrG---~t~K~ie~eTg~kI~IrGkGS~kd~-----------~~e~~~~g~~~~~~~~epLHV~Isa~~~   80 (140)
T 2bl5_A           15 DFNFVGRILGPRG---LTAKQLEAETGCKIMVRGKGSMRDK-----------KKEEQNRGKPNWEHLNEDLHVLITVEDA   80 (140)
T ss_dssp             SSCHHHHHTTTTH---HHHHHHHHHHSEEEEEESTTSSCCH-----------HHHHTSTTSHHHHTTTSCCEEEEEECSC
T ss_pred             CCCeeeEEECCCc---chHHHHHHHHCCeEEEecCCCcccc-----------cccccccCCCCccccCCCcEEEEEecCc
Confidence            4689999999988   888887754332   22 5677765           3577889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccCC
Q psy14719        140 ENRAELKLARAVEEVQKLLVP  160 (160)
Q Consensus       140 ~~~~~~~l~~a~~~~~~~l~p  160 (160)
                      +++|+.+|++|+++|+++|+|
T Consensus        81 ~~~~~~~l~~A~~~I~~lL~p  101 (140)
T 2bl5_A           81 QNRAELKLKRAVEEVKKLLVP  101 (140)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSC
T ss_pred             hhhHHHHHHHHHHHHHHHCCC
Confidence            999999999999999999987

>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=1.7e-15  Score=113.59  Aligned_cols=73  Identities=25%  Similarity=0.273  Sum_probs=61.4

Q ss_pred             CcHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcccCCccch
Q psy14719          1 MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVPQAEGED   80 (160)
Q Consensus         1 ~TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P~~e~~n   80 (160)
                      .|+|+||++|||||.|||+||++....        .-.+++|||||+|++.+.+     .+++|+++|+.|+.++.+..+
T Consensus        39 ~tiK~I~~eTG~kI~I~G~gS~~~e~~--------~~~e~~e~l~V~I~a~~~e-----~i~~A~~~Ie~Ll~~v~~~~~  105 (119)
T 2yqr_A           39 SYLQHIQIETGAKVFLRGKGSGCIEPA--------SGREAFEPMYIYISHPKPE-----GLAAAKKLCENLLQTVHAEYS  105 (119)
T ss_dssp             HHHHHHHHHHCCEEEEESBTTTCCCTT--------TSSCCSSBCEEEEEESSHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHCCEEEEecCCccccccc--------cccccCCCcEEEEEeCCHH-----HHHHHHHHHHHHhhchHHHHH
Confidence            379999999999999999999973221        1235889999999998877     699999999999999887778


Q ss_pred             HHHHHH
Q psy14719         81 ELKKRQ   86 (160)
Q Consensus        81 elK~~Q   86 (160)
                      .+|++|
T Consensus       106 ~~~~q~  111 (119)
T 2yqr_A          106 RFVNQI  111 (119)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            887755

>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1

Probab=98.38  E-value=1.9e-07  Score=70.51  Aligned_cols=75  Identities=23%  Similarity=0.345  Sum_probs=55.6

Q ss_pred             HHHHHhhhcccCCccchHHHHHHHHHHH---HH-hCcccCCCccchhhhhccchhhhhcCCCCcccccccceeeEEeeCc
Q psy14719         64 AVEEVQKLLVPQAEGEDELKKRQLMELA---II-NGTYRDNNAKVLAAAVFVFSEEANRGKPNWEHLSEELHVLISVEDT  139 (160)
Q Consensus        64 Av~~I~klL~P~~e~~nelK~~QL~ELA---~l-NGtlRd~~~~~~~~~~f~~~ee~~~g~p~~~hL~~~lhv~i~~~~~  139 (160)
                      .+++|..+++|-+   +.+|+.|-.--+   +. .|+.++...            +...|. .|+|+++||||+|++.++
T Consensus        20 ~~n~iG~IIGP~G---~tiK~Iq~eTG~kI~IrgkgS~~~~~~------------~~~~~~-~~~~~~e~lhV~I~a~~~   83 (131)
T 1k1g_A           20 EINFVGLLIGPRG---NTLKNIEKECNAKIMIRGKGSVKEGKV------------GRKDGQ-MLPGEDEPLHALVTANTM   83 (131)
T ss_dssp             SHHHHHHHHCSSS---HHHHHHHHHSCCEEEEEESTTSSSSSS------------SSCCCC-CSCCSSCCEEEEEEESSH
T ss_pred             CcceeeeEECCCc---HHHHHHHHHHCCeEEecCCcccccccc------------cccccc-cccccCCCeEEEEEECCH
Confidence            5789999999988   888877753222   22 567766421            133454 599999999999999765


Q ss_pred             HHHHHHHHHHHHHHHHhccC
Q psy14719        140 ENRAELKLARAVEEVQKLLV  159 (160)
Q Consensus       140 ~~~~~~~l~~a~~~~~~~l~  159 (160)
                           .++++|++.|+++|.
T Consensus        84 -----e~~~~A~~~I~~ll~   98 (131)
T 1k1g_A           84 -----ENVKKAVEQIRNILK   98 (131)
T ss_dssp             -----HHHHHHHHHHHHHHT
T ss_pred             -----HHHHHHHHHHHHHHh
Confidence                 468999999999983

>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}

Probab=96.79  E-value=0.0032  Score=43.12  Aligned_cols=49  Identities=31%  Similarity=0.349  Sum_probs=36.9

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLL   72 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL   72 (160)
                      |.|+|+++|||+|.|...|+..                .+.+-.|.|++ +++     .+.+|.+.|..++
T Consensus        35 ~Ik~I~~~tga~I~i~~~~~~~----------------~~~er~v~I~G-~~~-----~v~~A~~~I~~i~   83 (85)
T 2opv_A           35 TIKQLQERAGVKMILIQDGSQN----------------TNVDKPLRIIG-DPY-----KVQQACEMVMDIL   83 (85)
T ss_dssp             HHHHHHHHHTCEEEECSSSCSS----------------TTSCEEEEEEE-CHH-----HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCEEEEcCCCCCC----------------CCCceEEEEEe-CHH-----HHHHHHHHHHHHh
Confidence            6899999999999998755421                12345799998 565     5788888887765

>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1

Probab=96.32  E-value=0.0093  Score=41.64  Aligned_cols=52  Identities=29%  Similarity=0.330  Sum_probs=38.6

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcccC
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVPQ   75 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P~   75 (160)
                      |.|+|+++|||+|.|-..|...                ...+-.|.|++ +++     .+.+|..+|..++...
T Consensus        36 ~Ik~I~~~tga~I~I~~~~~~~----------------~~~~r~v~I~G-~~~-----~v~~A~~~I~~~i~~~   87 (94)
T 1x4m_A           36 TIKQLQERAGVKMVMIQDGPQN----------------TGADKPLRITG-DPY-----KVQQAKEMVLELIRDQ   87 (94)
T ss_dssp             HHHHHHHHHTSEEEECCSCCCS----------------SCSCEEEEEEE-CTT-----THHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHCCeEEecCCCCCC----------------CCCceEEEEEe-CHH-----HHHHHHHHHHHHHhcc
Confidence            7899999999999997643211                12345788998 555     4888999998888654

>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A

Probab=95.93  E-value=0.014  Score=38.65  Aligned_cols=51  Identities=20%  Similarity=0.231  Sum_probs=36.0

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLV   73 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~   73 (160)
                      |.|+|+++|||+|.|...+...           |+    ..+-.|.|++. ++     .+.+|...|..++.
T Consensus        24 ~Ik~I~~~tga~I~i~~~~~~~-----------~~----~~~~~v~I~G~-~~-----~v~~A~~~I~~~i~   74 (76)
T 1dtj_A           24 TLVEYQELTGARIQISKKGEFL-----------PG----TRNRRVTITGS-PA-----ATQAAQYLISQRVT   74 (76)
T ss_dssp             HHHHHHHHHCCEEEECCTTCCS-----------TT----CCEEEEEEEES-HH-----HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHhCCEEEECcCCCCC-----------CC----CceeEEEEEeC-HH-----HHHHHHHHHHHHHh
Confidence            6899999999999998643211           11    12447888885 44     57888888887764

>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.76  E-value=0.0038  Score=46.23  Aligned_cols=73  Identities=22%  Similarity=0.149  Sum_probs=45.8

Q ss_pred             HHHHHhhhcccCCccchHHHHHHHHHHHHHhCcccCCCccchhhhhccchhhhhcCCCCcccccccceeeEEeeCcHHHH
Q psy14719         64 AVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAKVLAAAVFVFSEEANRGKPNWEHLSEELHVLISVEDTENRA  143 (160)
Q Consensus        64 Av~~I~klL~P~~e~~nelK~~QL~ELA~lNGtlRd~~~~~~~~~~f~~~ee~~~g~p~~~hL~~~lhv~i~~~~~~~~~  143 (160)
                      -+++|..+|+|-+   +.+|+.|-.--+-+  ..|+++.      .|  .|    + +.-+++++||||.|++.+++   
T Consensus        26 ~fn~ig~IIGpgG---~tiK~I~~eTG~kI--~I~G~gS------~~--~e----~-~~~~e~~e~l~V~I~a~~~e---   84 (119)
T 2yqr_A           26 TFNVKEKVEGPGC---SYLQHIQIETGAKV--FLRGKGS------GC--IE----P-ASGREAFEPMYIYISHPKPE---   84 (119)
T ss_dssp             TTCHHHHHSCGGG---HHHHHHHHHHCCEE--EEESBTT------TC--CC----T-TTSSCCSSBCEEEEEESSHH---
T ss_pred             CCCeeeeEECCCC---hHHHHHHHHHCCEE--EEecCCc------cc--cc----c-ccccccCCCcEEEEEeCCHH---
Confidence            4678999999987   77776653322211  2222221      01  01    1 12246999999999998765   


Q ss_pred             HHHHHHHHHHHHhccC
Q psy14719        144 ELKLARAVEEVQKLLV  159 (160)
Q Consensus       144 ~~~l~~a~~~~~~~l~  159 (160)
                        .++.|++.|+.+|.
T Consensus        85 --~i~~A~~~Ie~Ll~   98 (119)
T 2yqr_A           85 --GLAAAKKLCENLLQ   98 (119)
T ss_dssp             --HHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHhh
Confidence              46788888888764

>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}

Probab=95.62  E-value=0.019  Score=41.06  Aligned_cols=52  Identities=13%  Similarity=0.173  Sum_probs=36.6

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhccc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP   74 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P   74 (160)
                      |.|+|+++|||+|.|.....             ++  ....+=.|.|++ +.+     .+.+|...|..++..
T Consensus        28 ~Ik~I~~~TGa~I~I~~~~~-------------~~--~~~~~r~V~I~G-~~e-----~v~~A~~~I~~~i~e   79 (107)
T 2hh2_A           28 NVKAINQQTGAFVEISRQLP-------------PN--GDPNFKLFIIRG-SPQ-----QIDHAKQLIEEKIEG   79 (107)
T ss_dssp             HHHHHHHHSSSEEEECCCCC-------------TT--CCTTEEEEEEES-CHH-----HHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHhCCEEEEcCccC-------------CC--CCCCceEEEEEC-CHH-----HHHHHHHHHHHHHhc
Confidence            78999999999999976421             11  011234688888 555     588899999888754

>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}

Probab=95.24  E-value=0.03  Score=40.16  Aligned_cols=48  Identities=17%  Similarity=0.222  Sum_probs=34.4

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLV   73 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~   73 (160)
                      |+|+|+++|||+|.|...+              +    .+.+-.|.|++. ++     .+++|...|..++.
T Consensus        32 ~Ik~I~~~TGakI~I~~~~--------------~----~~~er~V~I~G~-~e-----~v~~A~~~I~~ii~   79 (106)
T 2hh3_A           32 MIKKIQNDAGVRIQFKQDD--------------G----TGPEKIAHIMGP-PD-----RCEHAARIINDLLQ   79 (106)
T ss_dssp             HHHHHHHHHTCEEEECSSC--------------S----SSSEEEEEEESS-HH-----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcEEEEecCC--------------C----CCceeEEEEEeC-HH-----HHHHHHHHHHHHHh
Confidence            7899999999999997421              0    112457888874 44     47788888877763

>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1

Probab=95.07  E-value=0.032  Score=38.10  Aligned_cols=52  Identities=19%  Similarity=0.206  Sum_probs=36.1

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhccc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP   74 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P   74 (160)
                      |.|+|+++|||+|.|-..+...           |+    ..+=.|.|++. ++     .+..|...|..++..
T Consensus        24 ~Ik~I~~~tga~I~I~~~~~~~-----------~g----~~~r~v~I~G~-~~-----~v~~A~~~I~~~i~~   75 (87)
T 1ec6_A           24 TLVEYQELTGARIQISKKGEFL-----------PG----TRNRRVTITGS-PA-----ATQAAQYLISQRVTY   75 (87)
T ss_dssp             HHHHHHHHHCCEEEECCTTCBS-----------TT----SCEEEEEEESS-HH-----HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhCCEEEEccCCCCC-----------CC----CCceEEEEEcC-HH-----HHHHHHHHHHHHHhc
Confidence            6799999999999997643211           11    12346888874 44     578888888887743

>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A

Probab=94.70  E-value=0.054  Score=37.50  Aligned_cols=49  Identities=18%  Similarity=0.367  Sum_probs=35.1

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhccc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP   74 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P   74 (160)
                      |.|+|+++|||+|.|....   +        |       ..+-.|.|++. ++     .+.+|..+|..++..
T Consensus        36 ~Ik~I~~~tga~I~I~~~~---~--------g-------~~~r~v~I~G~-~e-----~v~~A~~~I~~~i~~   84 (92)
T 1x4n_A           36 QISRIQQESGCKIQIAPDS---G--------G-------LPERSCMLTGT-PE-----SVQSAKRLLDQIVEK   84 (92)
T ss_dssp             HHHHHHHHSCCEEEECSCC---T--------T-------CSEEEEEEEEC-HH-----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCEEEEcCCC---C--------C-------CCccEEEEEeC-HH-----HHHHHHHHHHHHHHh
Confidence            6899999999999997642   0        0       12346888885 44     477888888777643

>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.59  E-value=0.062  Score=36.91  Aligned_cols=44  Identities=25%  Similarity=0.345  Sum_probs=30.9

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLL   72 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL   72 (160)
                      |.|+||++|||+|.|-..+                    +++ .|.|++. ++     .+.+|..+|..++
T Consensus        31 tIk~Iqe~Tga~I~I~~~~--------------------~~~-~v~ItG~-~e-----~v~~A~~~I~~~i   74 (83)
T 2dgr_A           31 TIKRIQQRTHTYIVTPGRD--------------------KEP-VFAVTGM-PE-----NVDRAREEIEAHI   74 (83)
T ss_dssp             SHHHHHHHTTCEEECCCSS--------------------SCC-EEEEEEC-TT-----THHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCeEEecCCC--------------------CCC-eEEEEcC-HH-----HHHHHHHHHHHHH
Confidence            7899999999999995421                    122 3777775 34     3777877776654

>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A

Probab=94.34  E-value=0.092  Score=35.42  Aligned_cols=48  Identities=21%  Similarity=0.239  Sum_probs=33.9

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLV   73 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~   73 (160)
                      |.|+|+++|||+|.|...              .|+    ..+=.|.|++. ++     .+.+|...|..++.
T Consensus        28 ~Ik~I~~~tga~I~i~~~--------------~~~----~~~~~v~I~G~-~~-----~v~~A~~~I~~~i~   75 (82)
T 1zzk_A           28 RIKQIRHESGASIKIDEP--------------LEG----SEDRIITITGT-QD-----QIQNAQYLLQNSVK   75 (82)
T ss_dssp             HHHHHHHHHCCEEEECCT--------------TSC----SSEEEEEEEEC-HH-----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCEEEEcCC--------------CCC----CCceEEEEEeC-HH-----HHHHHHHHHHHHHH
Confidence            689999999999999641              011    12346888883 44     47788888877764

>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1

Probab=94.20  E-value=0.082  Score=37.36  Aligned_cols=51  Identities=18%  Similarity=0.145  Sum_probs=36.1

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhccc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP   74 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P   74 (160)
                      |.|+|+++|||+|.|-..+.             +.   ..++=.|.|++.. +     .+.+|..+|..++..
T Consensus        36 ~Ik~I~~~tga~I~I~~~~~-------------~~---~~~~~~V~I~G~~-~-----~v~~A~~~I~~~i~e   86 (104)
T 1we8_A           36 TIRSICKASGAKITCDKESE-------------GT---LLLSRLIKISGTQ-K-----EVAAAKHLILEKVSE   86 (104)
T ss_dssp             HHHHHHHHHCCEEEECCSSC-------------CS---SSSEEEEEEEEEH-H-----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCEEEEecCCC-------------CC---CCCcceEEEEcCH-H-----HHHHHHHHHHHHHhh
Confidence            68999999999999976421             00   1234578898853 2     378899999887753

>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}

Probab=94.11  E-value=0.11  Score=34.50  Aligned_cols=48  Identities=15%  Similarity=0.164  Sum_probs=35.0

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLV   73 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~   73 (160)
                      |.|+|+++|||+|.|-..   .           |+    ..+=.|.|++. ++     .+.+|...|..++.
T Consensus        26 ~Ik~I~~~tga~I~i~~~---~-----------~~----~~~~~v~I~G~-~~-----~v~~A~~~I~~~i~   73 (76)
T 2p2r_A           26 KINEIRQMSGAQIKIANP---V-----------EG----STDRQVTITGS-AA-----SISLAQYLINVRLS   73 (76)
T ss_dssp             HHHHHHHHHCCEEEECCC---C-----------TT----CSEEEEEEEEC-HH-----HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCEEEEcCC---C-----------CC----CCeEEEEEEeC-HH-----HHHHHHHHHHHHHH
Confidence            679999999999999751   0           11    12447889885 44     57889888888764

>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1

Probab=94.02  E-value=0.087  Score=35.48  Aligned_cols=49  Identities=14%  Similarity=0.144  Sum_probs=35.4

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhccc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP   74 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P   74 (160)
                      |.|+|+++|||+|.|-...              ++    ..+=.|.|++. ++     .+.+|..+|..++..
T Consensus        27 ~Ik~I~~~sga~I~i~~~~--------------~~----~~~r~v~I~G~-~~-----~v~~A~~~I~~~i~~   75 (82)
T 1wvn_A           27 NINEIRQMSGAQIKIANPV--------------EG----SSGRQVTITGS-AA-----SISLAQYLINARLSS   75 (82)
T ss_dssp             HHHHHHHHHCCEEEECCCC--------------TT----CSEEEEEEEEC-HH-----HHHHHHHHHHHHTC-
T ss_pred             hHHHHHHHhCCEEEEecCC--------------CC----CCceEEEEEcC-HH-----HHHHHHHHHHHHHHh
Confidence            6899999999999997521              11    12447888885 34     578899999888754

>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A

Probab=93.82  E-value=0.13  Score=35.29  Aligned_cols=48  Identities=21%  Similarity=0.239  Sum_probs=33.3

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLV   73 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~   73 (160)
                      |.|+|+++|||+|.|...              .|+    ..+=.|.|++. ++     .+.+|...|..++.
T Consensus        35 ~Ik~I~~~tga~I~I~~~--------------~~~----~~~~~v~I~G~-~e-----~v~~A~~~I~~~i~   82 (89)
T 1j5k_A           35 RIKQIRHESGASIKIDEP--------------LEG----SEDRIITITGT-QD-----QIQNAQYLLQNSVK   82 (89)
T ss_dssp             HHHHHHHHTCCEEEECSC--------------CSS----SSEEEEEEEEE-HH-----HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhCCeEEecCC--------------CCC----CCccEEEEEcC-HH-----HHHHHHHHHHHHHH
Confidence            689999999999999641              011    12336888885 44     47778888877653

>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1

Probab=93.38  E-value=0.084  Score=36.71  Aligned_cols=45  Identities=24%  Similarity=0.282  Sum_probs=32.7

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLL   72 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL   72 (160)
                      |.|+|+++|||+|.|-..++                    .+=.|.|++. .+     .+.+|..+|..++
T Consensus        38 ~Ik~I~~etg~~I~i~~~~~--------------------~~~~V~I~G~-~e-----~v~~A~~~I~~i~   82 (94)
T 2cte_A           38 KLQDLELKTATKIQIPRPDD--------------------PSNQIKITGT-KE-----GIEKARHEVLLIS   82 (94)
T ss_dssp             HHHHHHHHTTCCCBCCCTTS--------------------SCCEEEEEEC-HH-----HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHCCEEEeCCCCC--------------------CCCeEEEEEC-HH-----HHHHHHHHHHHHh
Confidence            78999999999999954210                    1127889886 44     4777888887765

>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*

Probab=93.27  E-value=0.18  Score=33.33  Aligned_cols=46  Identities=17%  Similarity=0.247  Sum_probs=33.6

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLV   73 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~   73 (160)
                      |.|+|+++|||+|.|-..|+                    .+=-|.|++. ++     .+.+|..+|..+|.
T Consensus        26 ~Ik~I~~~tga~I~i~~~~~--------------------~er~v~I~G~-~~-----~v~~A~~~I~~~l~   71 (73)
T 2axy_A           26 SVKKMREESGARINISEGNC--------------------PERIITLAGP-TN-----AIFKAFAMIIDKLE   71 (73)
T ss_dssp             HHHHHHHHHCCEEEECSSCC--------------------SEEEEEEEEC-HH-----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCEEEEecCCC--------------------CcEEEEEEeC-HH-----HHHHHHHHHHHHHh
Confidence            67999999999999965321                    1225788886 45     47888888877664

>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A

Probab=92.61  E-value=0.25  Score=32.47  Aligned_cols=45  Identities=9%  Similarity=0.119  Sum_probs=32.8

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLL   72 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL   72 (160)
                      |.++|+++|||+|.|--.|+             +       +=-|.|++. .+     .+.+|..+|..+.
T Consensus        26 ~I~~I~e~tg~~I~i~~~g~-------------~-------~~~V~I~G~-~~-----~v~~A~~~I~~i~   70 (71)
T 1vig_A           26 NINRIKDQYKVSVRIPPDSE-------------K-------SNLIRIEGD-PQ-----GVQQAKRELLELA   70 (71)
T ss_dssp             HHHHHHHHTCCEEECCCCCS-------------S-------SEEEEEEES-SH-----HHHHHHHHHHHTC
T ss_pred             cHHHHHHHHCCEEEECCCCC-------------c-------ccEEEEEcC-HH-----HHHHHHHHHHHHh
Confidence            68999999999999965432             0       115888886 44     4788888887664

>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1

Probab=92.41  E-value=0.2  Score=35.06  Aligned_cols=48  Identities=17%  Similarity=0.234  Sum_probs=32.3

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLL   72 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL   72 (160)
                      |.|+|+++|||+|.|--.|.             |+    ..+=-|.|++. .+     .+.+|...|..++
T Consensus        38 ~Ik~I~~etg~~I~i~~~g~-------------~~----~~~~~V~I~G~-~e-----~v~~A~~~I~~iv   85 (97)
T 2ctl_A           38 VITQIRLEHDVNIQFPDKDD-------------GN----QPQDQITITGY-EK-----NTEAARDAILRIV   85 (97)
T ss_dssp             HHHHHHHHHTCEEECCCTTT-------------CS----SCSSEEEEESC-HH-----HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHCCEEEecCCCC-------------CC----CCccEEEEEeC-HH-----HHHHHHHHHHHHH
Confidence            68999999999999965442             11    01235888885 44     3666777776654

>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}

Probab=92.18  E-value=0.25  Score=36.72  Aligned_cols=51  Identities=18%  Similarity=0.227  Sum_probs=37.0

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhccc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP   74 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P   74 (160)
                      |.|+|+++|||+|.|-..|+             |+   .+++-.|.|++ +++     .+..|..+|..++..
T Consensus       106 ~I~~i~~~tga~I~i~~~~~-------------~~---~~~~~~v~I~G-~~~-----~v~~A~~~I~~~i~~  156 (163)
T 3krm_A          106 TVNELQNLTAAEVVVPRDQT-------------PD---ENDQVIVKIIG-HFY-----ASQMAQRKIRDILAQ  156 (163)
T ss_dssp             HHHHHHHHHCCEEECCTTCC-------------CC---TTSEEEEEEEE-CHH-----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCeEEECCCCC-------------CC---CCCceEEEEEe-CHH-----HHHHHHHHHHHHHHH
Confidence            67999999999999976432             21   23445788998 455     478888888888743

>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1

Probab=91.90  E-value=0.27  Score=34.32  Aligned_cols=46  Identities=15%  Similarity=0.182  Sum_probs=32.0

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLL   72 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL   72 (160)
                      |.|+|+++|||+|.|-..|+.                   .+=.|.|++. ++     .+.+|.+.|..+.
T Consensus        38 ~Ir~I~e~tg~~I~i~~~g~~-------------------~~~~V~I~G~-~e-----~v~~A~~~I~~i~   83 (95)
T 2ctm_A           38 AIRKIMDEFKVDIRFPQSGAP-------------------DPNCVTVTGL-PE-----NVEEAIDHILNLE   83 (95)
T ss_dssp             HHHHHHHHHTCEEECCCTTCS-------------------CTTEEEEESC-HH-----HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHCCeEEecCCCCC-------------------CCcEEEEEcC-HH-----HHHHHHHHHHHHH
Confidence            789999999999999654421                   1226888885 34     3667777776554

>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1

Probab=91.52  E-value=0.28  Score=34.79  Aligned_cols=46  Identities=15%  Similarity=0.041  Sum_probs=33.8

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLV   73 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~   73 (160)
                      |.|+|+++|||+|.|=-.|+.            +        =.|.|++.. +     .+.+|...|..++.
T Consensus        38 ~Ir~I~eetg~~I~I~~~g~~------------~--------~~V~I~G~~-e-----~v~~A~~~I~~i~~   83 (104)
T 2ctk_A           38 GIRKMMDEFEVNIHVPAPELQ------------S--------DIIAITGLA-A-----NLDRAKAGLLERVK   83 (104)
T ss_dssp             HHHHHHHHTCCEEECCCTTTT------------C--------CEEEEEECH-H-----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCEEEecCCCCC------------c--------ceEEEEcCH-H-----HHHHHHHHHHHHHh
Confidence            689999999999999654320            1        178888863 4     47888888877763

>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}

Probab=88.87  E-value=0.62  Score=34.32  Aligned_cols=48  Identities=17%  Similarity=0.248  Sum_probs=33.7

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLV   73 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~   73 (160)
                      |.|+|+++|||+|.|-..+.              .    ..+=.|.|++. ++     .+..|...|..++.
T Consensus       112 ~I~~i~~~tg~~I~i~~~~~--------------~----~~~~~v~I~G~-~~-----~v~~A~~~I~~~i~  159 (164)
T 2jvz_A          112 MIKKIQNDAGVRIQFKQDDG--------------T----GPEKIAHIMGP-PD-----RCEHAARIINDLLQ  159 (164)
T ss_dssp             HHHHHHHHTCCEEEECCCCT--------------T----SSEEEEEEESC-HH-----HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHCCeEEEeCCCC--------------C----CCcEEEEEEcC-HH-----HHHHHHHHHHHHHh
Confidence            68999999999999975321              0    12346778874 44     47778888877763

>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}

Probab=88.59  E-value=0.9  Score=33.43  Aligned_cols=52  Identities=29%  Similarity=0.315  Sum_probs=35.1

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcccC
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVPQ   75 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P~   75 (160)
                      |.|+|+++|||+|.|--.++.            +    ...+-.|.|++ +++     .+.+|...|..++...
T Consensus        23 ~Ik~i~~~tg~~I~i~~~~~~------------~----~~~~r~v~I~G-~~~-----~v~~A~~~I~~ii~e~   74 (164)
T 2jvz_A           23 TIKQLQERAGVKMILIQDGSQ------------N----TNVDKPLRIIG-DPY-----KVQQACEMVMDILRER   74 (164)
T ss_dssp             HHHHHHHTSCSEEEECCCTTS------------S----SSSCEEEEEEE-CHH-----HHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHhCCeEEEecCCCC------------C----CCCceEEEEEc-CHH-----HHHHHHHHHHHHHHhc
Confidence            689999999999999532211            1    11234678888 344     4778888888877643

>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1

Probab=87.66  E-value=1  Score=33.71  Aligned_cols=48  Identities=21%  Similarity=0.306  Sum_probs=32.9

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLV   73 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~   73 (160)
                      |.|+|+++|||+|.|-..    +          ++    ..+-.|.|++. ++     .+.+|...|..++.
T Consensus        24 ~Ik~i~~~tg~~I~i~~~----~----------~~----~~~r~v~I~G~-~~-----~v~~A~~~I~~~~~   71 (174)
T 1j4w_A           24 MIKKIQNDAGVRIQFKPD----D----------GT----TPERIAQITGP-PD-----RAQHAAEIITDLLR   71 (174)
T ss_dssp             HHHHHHHHHCCEEEEECC----T----------TS----CSEEEEEEEEC-HH-----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCEEEEecC----C----------CC----CCccEEEEEeC-HH-----HHHHHHHHHHHHHH
Confidence            689999999999999642    1          00    12346778875 33     47778888877764

>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1

Probab=86.84  E-value=0.83  Score=31.91  Aligned_cols=46  Identities=20%  Similarity=0.202  Sum_probs=31.7

Q ss_pred             cHHhhhHHh-CCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcc
Q psy14719          2 TAKQLELET-GCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLV   73 (160)
Q Consensus         2 TlK~LE~eT-gcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~   73 (160)
                      |+|+|+++| ||+|.|--.||.                    .=-|.|.+.+.      .+++|.++|..++.
T Consensus        38 ~Ir~I~eetggv~I~i~~~g~~--------------------~~~V~I~G~~~------~v~~A~~~I~~iv~   84 (95)
T 2ctj_A           38 LIRSIMEECGGVHIHFPVEGSG--------------------SDTVVIRGPSS------DVEKAKKQLLHLAE   84 (95)
T ss_dssp             HHHHHHHHHTSCEEECCCTTTT--------------------CCEEEEESCHH------HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCCEEEeCCCCCC--------------------cceEEEEcCHH------HHHHHHHHHHHHHh
Confidence            689999999 999998543321                    11588887532      36778888876653

>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*

Probab=85.66  E-value=0.97  Score=33.96  Aligned_cols=53  Identities=25%  Similarity=0.221  Sum_probs=33.9

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcccC
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVPQ   75 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P~   75 (160)
                      |.|+|+++|||+|.|-..+..-           |+   .. +=-|.|++. .+     .+.+|..+|..++...
T Consensus        27 ~Ik~i~~~tg~~I~i~~~~~~~-----------~~---~~-er~v~I~G~-~~-----~v~~A~~~I~~~~~~~   79 (178)
T 2anr_A           27 TIVQLQKETGATIKLSKSKDFY-----------PG---TT-ERVCLIQGT-IE-----ALNAVHGFIAEKIREM   79 (178)
T ss_dssp             HHHHHHHHHCCEEEECCTTCBC-----------TT---SS-EEEEEEEEC-HH-----HHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHhCCeEEEecCCCCC-----------CC---CC-CceEEEEeC-HH-----HHHHHHHHHHHHHhcc
Confidence            6899999999999996532111           11   11 224677774 33     4677888887777543

>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*

Probab=83.20  E-value=1.2  Score=33.36  Aligned_cols=52  Identities=23%  Similarity=0.195  Sum_probs=35.0

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcccC
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVPQ   75 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P~   75 (160)
                      |.|+|+++|||+|.|-.....            ++    ..+=.|.|++. ++     .+.+|...|..++...
T Consensus       125 ~Ik~i~~~tga~I~i~~~~~~------------~~----~~~~~v~I~G~-~~-----~v~~A~~~I~~~i~e~  176 (178)
T 2anr_A          125 TVKAIMEQSGAWVQLSQKPDG------------IN----LQNRVVTVSGE-PE-----QNRKAVELIIQKIQED  176 (178)
T ss_dssp             HHHHHHHHSSCEEEECCCC--------------------CCEEEEEEESS-HH-----HHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHCCEEEEeCCCCC------------CC----CCceEEEEEcC-HH-----HHHHHHHHHHHHHHhC
Confidence            689999999999999754210            11    12336777774 33     5788999998887643

>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1

Probab=80.68  E-value=4.8  Score=31.58  Aligned_cols=17  Identities=24%  Similarity=0.153  Sum_probs=15.6

Q ss_pred             cHHhhhHHhCCeEEEec
Q psy14719          2 TAKQLELETGCKIMVRG   18 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRG   18 (160)
                      |.|.||..|||+|.|-|
T Consensus       119 tik~iE~~Tg~~I~v~~  135 (191)
T 1tua_A          119 ARRTIEEMTDTYINVGE  135 (191)
T ss_dssp             HHHHHHHHHTCEEEECS
T ss_pred             HHHHHHHHHCceEEEcC
Confidence            78999999999999965

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	160
d2bl5a1	134	d.51.1.1 (A:1-134) Quaking protein A (Xqua) {Afric	2e-44
d2bl5a1	134	d.51.1.1 (A:1-134) Quaking protein A (Xqua) {Afric	2e-13
d1k1ga_	122	d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo s	2e-32
d1k1ga_	122	d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo s	4e-04

>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 134

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Quaking protein A (Xqua)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score =  140 bits (355), Expect = 2e-44
 Identities = 86/103 (83%), Positives = 94/103 (91%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
           +TAKQLE ETGCKIMVRGKGSMRDKKKEE NRGKPNWEHL+E+LHVLI+VED +NRAELK
Sbjct: 28  LTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELK 87

Query: 61  LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDNNAK 103
           L RAVEEV+KLLVP AEGED LKK +LMELAI+NGTYRD N K
Sbjct: 88  LKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDANLK 130

>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 134

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Quaking protein A (Xqua)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 61.4 bits (149), Expect = 2e-13
 Identities = 39/48 (81%), Positives = 44/48 (91%)

Query: 113 SEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP 160
            EE NRGKPNWEHL+E+LHVLI+VED +NRAELKL RAVEEV+KLLVP
Sbjct: 54  KEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVP 101

>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: RNA splicing factor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (275), Expect = 2e-32
 Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 4/98 (4%)

Query: 1   MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELK 60
            T K +E E   KIM+RGKGS+++ K     +         E LH L++    EN    K
Sbjct: 29  NTLKNIEKECNAKIMIRGKGSVKEGKVGR--KDGQMLPGEDEPLHALVTANTMENVK--K 84

Query: 61  LARAVEEVQKLLVPQAEGEDELKKRQLMELAIINGTYR 98
               +  + K  +   E +++L+K QL ELA +NGT R
Sbjct: 85  AVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLR 122

>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: RNA splicing factor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 4e-04
 Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 5/48 (10%)

Query: 113 SEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP 160
            +   +         E LH L++    EN       +AVE+++ +L  
Sbjct: 53  GKVGRKDGQMLPGEDEPLHALVTANTMENV-----KKAVEQIRNILKQ 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	160
d2bl5a1	134	Quaking protein A (Xqua) {African clawed frog (Xen	100.0
d1k1ga_	122	RNA splicing factor 1 {Human (Homo sapiens) [TaxId	99.97
d2bl5a1	134	Quaking protein A (Xqua) {African clawed frog (Xen	99.6
d1k1ga_	122	RNA splicing factor 1 {Human (Homo sapiens) [TaxId	98.99
d1tuaa2	104	Hypothetical protein APE0754 {Aeropyrum pernix [Ta	95.02
d1dtja_	74	Neuro-oncological ventral antigen 2, nova-2, KH3 {	95.0
d1x4ma1	81	Far upstream binding element, FBP {Mouse (Mus musc	94.69
d1j4wa1	74	Far upstream binding element, FBP {Human (Homo sap	94.44
d1j4wa2	71	Far upstream binding element, FBP {Human (Homo sap	94.31
d1we8a_	104	Tudor and KH domain containing protein, Tdrkh {Mou	93.85
d1x4na1	79	Far upstream binding element, FBP {Mouse (Mus musc	92.24
d2ba0a3	84	Exosome complex RNA-binding protein 1, ECR1 {Archa	91.94
d2ctea1	81	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	91.59
d2ctla1	84	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	91.29
d2z0sa2	87	Exosome complex RNA-binding protein 1, ECR1 {Aerop	91.21
d1zzka1	75	HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]}	91.06
d2ctka1	91	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	90.92
d1viga_	71	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	90.8
d2ctma1	81	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	90.63
d1wvna1	70	Poly(RC)-binding protein 1 {Human (Homo sapiens) [	90.54
d2je6i3	69	Exosome complex RNA-binding protein 1, ECR1 {Sulfo	90.24
d2cpqa1	78	Fragile X mental retardation syndrome related prot	88.69
d2axya1	71	Poly(RC)-binding protein 2 {Human (Homo sapiens) [	86.47
d1tuaa1	84	Hypothetical protein APE0754 {Aeropyrum pernix [Ta	85.42
d1e3ha4	54	Polynucleotide phosphorylase/guanosine pentaphosph	81.9

>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Quaking protein A (Xqua)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=100.00  E-value=1e-38  Score=242.78  Aligned_cols=105  Identities=82%  Similarity=1.182  Sum_probs=100.4

Q ss_pred             CcHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcccCCccch
Q psy14719          1 MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVPQAEGED   80 (160)
Q Consensus         1 ~TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P~~e~~n   80 (160)
                      +|+|+||++|||||+||||||+|++++++.++|+++|+|++|||||+|+|++++..|+.+|++|+++|+++|.|+++++|
T Consensus        28 ~t~K~le~eTg~kI~IrGrGS~k~~~~~~~~~~~~~~~~~~epLHv~I~a~~~~~~a~~kl~~A~~~I~~lL~p~~e~~d  107 (134)
T d2bl5a1          28 LTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVPAAEGED  107 (134)
T ss_dssp             HHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHHHHHHHHHHHHHHHSSCCSSSSS
T ss_pred             chHHHHHHHHCCEEEEEecCCCcCccccccccCCCCCcCCCCCCEEEEEecCcHHHHHHHHHHHHHHHHHHcCCCccchH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCcccCCCccch
Q psy14719         81 ELKKRQLMELAIINGTYRDNNAKVL  105 (160)
Q Consensus        81 elK~~QL~ELA~lNGtlRd~~~~~~  105 (160)
                      ++|++||+|||+|||||||++.+.+
T Consensus       108 e~k~~QL~eLa~lNGt~r~~~~~~~  132 (134)
T d2bl5a1         108 SLKKMKLMELAILNGTYRDANLKSP  132 (134)
T ss_dssp             HHHHHHHTGGGSSSTTTSGGGGSCT
T ss_pred             HHHHHHHHHHHHhcCccccccCCCC
Confidence            9999999999999999999976543

>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: RNA splicing factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.2e-32  Score=202.17  Aligned_cols=91  Identities=37%  Similarity=0.583  Sum_probs=82.0

Q ss_pred             CcHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhc---ccCCc
Q psy14719          1 MTAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLL---VPQAE   77 (160)
Q Consensus         1 ~TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL---~P~~e   77 (160)
                      +|+|+||++|||||+||||||+||++.+.  .+.+.|+|+++||||+|+|++++     ++++|+.+|+++|   .|++|
T Consensus        29 ~t~K~Le~eTgckI~IrGrGS~kd~~~~~--~~~~~~~~~~epLHv~I~a~~~~-----~~~~A~~~i~~ll~~~~~~~e  101 (122)
T d1k1ga_          29 NTLKNIEKECNAKIMIRGKGSVKEGKVGR--KDGQMLPGEDEPLHALVTANTME-----NVKKAVEQIRNILKQGIETPE  101 (122)
T ss_dssp             HHHHHHHHHSCCEEEEEESTTSSSSSSSS--CCCCCSCCSSCCEEEEEEESSHH-----HHHHHHHHHHHHHTTTTSCCT
T ss_pred             chHHHHHHHHCCEEEEEecCCcccccccc--cCCCCCCCCCCCceEEEecCChh-----hHHHHHHHHHHHHHhcCCCCC
Confidence            48999999999999999999999988654  35667889999999999998866     6999999999999   45778


Q ss_pred             cchHHHHHHHHHHHHHhCccc
Q psy14719         78 GEDELKKRQLMELAIINGTYR   98 (160)
Q Consensus        78 ~~nelK~~QL~ELA~lNGtlR   98 (160)
                      ++|++|++||+|||+||||||
T Consensus       102 ~~d~~k~~Ql~eLa~lnGt~r  122 (122)
T d1k1ga_         102 DQNDLRKMQLRELARLNGTLR  122 (122)
T ss_dssp             TSSGGGGGGGHHHHHHHTCCC
T ss_pred             CchHHHHHHHHHHHHhcCcCC
Confidence            999999999999999999997

>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Quaking protein A (Xqua)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.60  E-value=5.1e-17  Score=122.41  Aligned_cols=83  Identities=55%  Similarity=0.856  Sum_probs=72.4

Q ss_pred             HHHHHhhhcccCCccchHHHHHHHH---HHHHH-hCcccCCCccchhhhhccchhhhhcCCCCcccccccceeeEEeeCc
Q psy14719         64 AVEEVQKLLVPQAEGEDELKKRQLM---ELAII-NGTYRDNNAKVLAAAVFVFSEEANRGKPNWEHLSEELHVLISVEDT  139 (160)
Q Consensus        64 Av~~I~klL~P~~e~~nelK~~QL~---ELA~l-NGtlRd~~~~~~~~~~f~~~ee~~~g~p~~~hL~~~lhv~i~~~~~  139 (160)
                      .++||.++|+|.+   +.+|+.|-.   .+++. .||+++..           +++.++|+|+|+|++|||||+|++.++
T Consensus        15 ~~NfvG~IiGPrG---~t~K~le~eTg~kI~IrGrGS~k~~~-----------~~~~~~~~~~~~~~~epLHv~I~a~~~   80 (134)
T d2bl5a1          15 DFNFVGRILGPRG---LTAKQLEAETGCKIMVRGKGSMRDKK-----------KEEQNRGKPNWEHLNEDLHVLITVEDA   80 (134)
T ss_dssp             SSCHHHHHTTTTH---HHHHHHHHHHSEEEEEESTTSSCCHH-----------HHHTSTTSHHHHTTTSCCEEEEEECSC
T ss_pred             CCCeeEEEECCCC---chHHHHHHHHCCEEEEEecCCCcCcc-----------ccccccCCCCCcCCCCCCEEEEEecCc
Confidence            6789999999988   888877753   33444 78888863           577789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccCC
Q psy14719        140 ENRAELKLARAVEEVQKLLVP  160 (160)
Q Consensus       140 ~~~~~~~l~~a~~~~~~~l~p  160 (160)
                      +..|+.||++|+++|+++|+|
T Consensus        81 ~~~a~~kl~~A~~~I~~lL~p  101 (134)
T d2bl5a1          81 QNRAELKLKRAVEEVKKLLVP  101 (134)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999997

>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: RNA splicing factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=4.1e-11  Score=88.22  Aligned_cols=75  Identities=20%  Similarity=0.354  Sum_probs=59.6

Q ss_pred             HHHHHhhhcccCCccchHHHHHHH---HHHHHH-hCcccCCCccchhhhhccchhhhhcCCCCcccccccceeeEEeeCc
Q psy14719         64 AVEEVQKLLVPQAEGEDELKKRQL---MELAII-NGTYRDNNAKVLAAAVFVFSEEANRGKPNWEHLSEELHVLISVEDT  139 (160)
Q Consensus        64 Av~~I~klL~P~~e~~nelK~~QL---~ELA~l-NGtlRd~~~~~~~~~~f~~~ee~~~g~p~~~hL~~~lhv~i~~~~~  139 (160)
                      .+++|.++|+|.+   +.+|+.|-   +.+++. .||++|...           +  ..+.+.|+|+++||||+|+++++
T Consensus        16 ~fNfvG~IlGPrG---~t~K~Le~eTgckI~IrGrGS~kd~~~-----------~--~~~~~~~~~~~epLHv~I~a~~~   79 (122)
T d1k1ga_          16 EINFVGLLIGPRG---NTLKNIEKECNAKIMIRGKGSVKEGKV-----------G--RKDGQMLPGEDEPLHALVTANTM   79 (122)
T ss_dssp             SHHHHHHHHCSSS---HHHHHHHHHSCCEEEEEESTTSSSSSS-----------S--SCCCCCSCCSSCCEEEEEEESSH
T ss_pred             CCCeeeeEeCCCC---chHHHHHHHHCCEEEEEecCCcccccc-----------c--ccCCCCCCCCCCCceEEEecCCh
Confidence            6889999999998   77777664   455555 789988743           1  24678999999999999999753


Q ss_pred             HHHHHHHHHHHHHHHHhccC
Q psy14719        140 ENRAELKLARAVEEVQKLLV  159 (160)
Q Consensus       140 ~~~~~~~l~~a~~~~~~~l~  159 (160)
                           .++++|++.|+++|.
T Consensus        80 -----~~~~~A~~~i~~ll~   94 (122)
T d1k1ga_          80 -----ENVKKAVEQIRNILK   94 (122)
T ss_dssp             -----HHHHHHHHHHHHHHT
T ss_pred             -----hhHHHHHHHHHHHHH
Confidence                 478899999999884

>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Hypothetical protein APE0754
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.02  E-value=0.029  Score=38.87  Aligned_cols=43  Identities=23%  Similarity=0.159  Sum_probs=31.7

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcccC
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVPQ   75 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P~   75 (160)
                      |.|.||+.|||+|.|-|.                         .|.|.+ +++     .++.|...|+.++...
T Consensus        34 tik~Ie~~Tg~~I~I~d~-------------------------~v~iig-~~e-----~i~~A~~~Ie~li~~~   76 (104)
T d1tuaa2          34 ARRTIEEMTDTYINVGEY-------------------------EVAIIG-DYE-----RAMAAKQAIEMLAEGR   76 (104)
T ss_dssp             HHHHHHHHHTCEEEECSS-------------------------EEEEEE-EHH-----HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCeEEEeCC-------------------------eEEEEE-Cch-----hHHHHHHHHHHHHcCC
Confidence            689999999999999441                         466666 344     4677888888888543

>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Neuro-oncological ventral antigen 2, nova-2, KH3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.016  Score=36.91  Aligned_cols=50  Identities=20%  Similarity=0.235  Sum_probs=33.8

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLL   72 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL   72 (160)
                      ++|+|+++|||+|.|...+..-           |+    ..+--|.|++. ++     .+++|...|.+.|
T Consensus        24 ~Ik~I~~~sga~I~i~~~~~~~-----------~~----~~~r~v~I~G~-~~-----~v~~A~~~I~~~i   73 (74)
T d1dtja_          24 TLVEYQELTGARIQISKKGEFL-----------PG----TRNRRVTITGS-PA-----ATQAAQYLISQRV   73 (74)
T ss_dssp             HHHHHHHHHCCEEEECCTTCCS-----------TT----CCEEEEEEEES-HH-----HHHHHHHHHHHHC
T ss_pred             hHHHHHHHcCCEEEEccCCCCC-----------CC----CCceEEEEEeC-HH-----HHHHHHHHHHHHc
Confidence            6899999999999997643211           11    11224778873 44     4888888887765

>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Far upstream binding element, FBP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.69  E-value=0.043  Score=35.39  Aligned_cols=50  Identities=28%  Similarity=0.358  Sum_probs=34.5

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLV   73 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~   73 (160)
                      |+|+|+++|||+|.|.-.+              |...  +.+=.|.|++. ++     .+.+|..+|..++.
T Consensus        29 ~Ik~I~~~tga~I~i~~~~--------------~~~~--~~~r~v~I~G~-~~-----~v~~A~~~I~~~i~   78 (81)
T d1x4ma1          29 TIKQLQERAGVKMVMIQDG--------------PQNT--GADKPLRITGD-PY-----KVQQAKEMVLELIR   78 (81)
T ss_dssp             HHHHHHHHHTSEEEECCSC--------------CCSS--CSCEEEEEEEC-TT-----THHHHHHHHHHHHC
T ss_pred             hHHHHHHHhCCeEEEccCC--------------CCCC--CCceEEEEEeC-HH-----HHHHHHHHHHHHHH
Confidence            7899999999999995321              1111  12237888884 44     48889999988774

>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Far upstream binding element, FBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.051  Score=34.34  Aligned_cols=48  Identities=19%  Similarity=0.288  Sum_probs=32.6

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLV   73 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~   73 (160)
                      |+|+|+++|||+|.|....+              +    ..+--|.|++. ++     .+.+|.+.|..++.
T Consensus        24 ~I~~I~~~tga~I~i~~~~~--------------~----~~~r~v~I~G~-~~-----~v~~A~~~I~~~i~   71 (74)
T d1j4wa1          24 MIKKIQNDAGVRIQFKPDDG--------------T----TPERIAQITGP-PD-----RAQHAAEIITDLLR   71 (74)
T ss_dssp             HHHHHHHHHCCEEEEECCTT--------------S----CSEEEEEEEEC-HH-----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCEEEeccCCC--------------C----CCeeEEEEEeC-HH-----HHHHHHHHHHHHHH
Confidence            78999999999999976321              0    11224667763 44     47788888877663

>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Far upstream binding element, FBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.31  E-value=0.082  Score=33.14  Aligned_cols=50  Identities=14%  Similarity=0.171  Sum_probs=31.9

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLL   72 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL   72 (160)
                      |+|+|+++|||+|.|-.....             . . ...+=-|.|++ +++     .+++|...|..++
T Consensus        22 ~Ik~I~~~sga~I~i~~~~~~-------------~-~-~~~~r~v~I~G-~~~-----~v~~A~~~I~e~i   71 (71)
T d1j4wa2          22 TIKSISQQSGARIELQRNPPP-------------N-A-DPNMKLFTIRG-TPQ-----QIDYARQLIEEKI   71 (71)
T ss_dssp             HHHHHHHHHCCEEEEECCCTT-------------T-S-CTTEEEEEEEC-CHH-----HHHHHHHHHHHHC
T ss_pred             ChHHHHhhcCcEEEEeecCCC-------------C-C-CCCeEEEEEEe-CHH-----HHHHHHHHHHhhC
Confidence            689999999999999543211             1 0 11122466777 344     4788888886653

>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Tudor and KH domain containing protein, Tdrkh
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.85  E-value=0.053  Score=36.59  Aligned_cols=50  Identities=18%  Similarity=0.135  Sum_probs=33.7

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLV   73 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~   73 (160)
                      ++|+|+++|||+|.|.-.+...               ... +=-|.|++ +++     .+.+|..+|.+++.
T Consensus        36 ~Ik~I~~~tga~I~i~~~~~~~---------------~~~-~r~v~I~G-~~~-----~v~~A~~~I~~~i~   85 (104)
T d1we8a_          36 TIRSICKASGAKITCDKESEGT---------------LLL-SRLIKISG-TQK-----EVAAAKHLILEKVS   85 (104)
T ss_dssp             HHHHHHHHHCCEEEECCSSCCS---------------SSS-EEEEEEEE-EHH-----HHHHHHHHHHHHHH
T ss_pred             chHHHHHHcCCEEEECCCCCCC---------------CCC-ccEEEEEe-CHH-----HHHHHHHHHHHHHh
Confidence            6899999999999995432110               111 12467777 344     48889999988884

>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Far upstream binding element, FBP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.24  E-value=0.15  Score=32.34  Aligned_cols=47  Identities=17%  Similarity=0.342  Sum_probs=32.0

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLL   72 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL   72 (160)
                      ++++|+++|||+|.|.-.              .++    +.+=-|.|++. ++     .+++|..+|..++
T Consensus        29 ~i~~I~~~tg~~I~i~~~--------------~~~----~~~r~v~I~G~-~~-----~v~~A~~~I~~~i   75 (79)
T d1x4na1          29 QISRIQQESGCKIQIAPD--------------SGG----LPERSCMLTGT-PE-----SVQSAKRLLDQIV   75 (79)
T ss_dssp             HHHHHHHHSCCEEEECSC--------------CTT----CSEEEEEEEEC-HH-----HHHHHHHHHHHHH
T ss_pred             hHHHHHHHhCCEEEEcCC--------------CCC----CCceEEEEEeC-HH-----HHHHHHHHHHHHH
Confidence            689999999999999421              011    11224778873 45     4788888887766

>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Exosome complex RNA-binding protein 1, ECR1
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.94  E-value=0.13  Score=33.81  Aligned_cols=43  Identities=19%  Similarity=0.186  Sum_probs=30.9

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhccc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLVP   74 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~P   74 (160)
                      |+|+|+++|||+|.|-     ++                   =-|.|+++ ++     .+..|.+.|..+...
T Consensus        22 ~I~~I~~~tg~~I~i~-----~~-------------------g~v~I~G~-~e-----~v~~A~~~I~~i~~e   64 (84)
T d2ba0a3          22 MIKLLKSELDVQIVVG-----QN-------------------GLIWVNGD-RR-----KVSIAEEAIYLIEQE   64 (84)
T ss_dssp             HHHHHHHHHTCEEEEC-----TT-------------------SEEEEESC-HH-----HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCEEEEC-----CC-------------------CEEEEEeC-HH-----HHHHHHHHHHHHHHh
Confidence            6899999999999991     00                   04788873 44     477788888777654

>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Vigilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.59  E-value=0.066  Score=34.54  Aligned_cols=45  Identities=27%  Similarity=0.371  Sum_probs=30.4

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLL   72 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL   72 (160)
                      ++++|+++|||+|.|-..||             +      ++ =|.|++. .+     .+.+|...|..++
T Consensus        31 ~i~~I~~~tg~~I~~p~~~~-------------~------~~-~v~I~G~-~~-----~v~~A~~~I~~iv   75 (81)
T d2ctea1          31 KLQDLELKTATKIQIPRPDD-------------P------SN-QIKITGT-KE-----GIEKARHEVLLIS   75 (81)
T ss_dssp             HHHHHHHHTTCCCBCCCTTS-------------S------CC-EEEEEEC-HH-----HHHHHHHHHHHHH
T ss_pred             hHHHHHHHhCCEEEECCCCC-------------C------CC-EEEEEeC-HH-----HHHHHHHHHHHHH
Confidence            68999999999999943221             1      11 2667774 33     4777888886655

>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Vigilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.29  E-value=0.2  Score=32.13  Aligned_cols=17  Identities=24%  Similarity=0.309  Sum_probs=15.1

Q ss_pred             cHHhhhHHhCCeEEEec
Q psy14719          2 TAKQLELETGCKIMVRG   18 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRG   18 (160)
                      |+|+|+++|||+|.|=.
T Consensus        31 ~i~~I~~~t~~~I~~~~   47 (84)
T d2ctla1          31 VITQIRLEHDVNIQFPD   47 (84)
T ss_dssp             HHHHHHHHHTCEEECCC
T ss_pred             hHHHHHHHhCCEEEECC
Confidence            68999999999999943

>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Exosome complex RNA-binding protein 1, ECR1
species: Aeropyrum pernix [TaxId: 56636]

Probab=91.21  E-value=0.19  Score=33.47  Aligned_cols=42  Identities=29%  Similarity=0.393  Sum_probs=29.9

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLL   72 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL   72 (160)
                      |+|+|+++|||+|.|-=     +        |           -|.|.+.+.+     .+..|.+.|..+.
T Consensus        22 ~ik~i~~~t~~~I~I~d-----~--------G-----------~V~I~g~~~~-----~~~~A~~~I~~I~   63 (87)
T d2z0sa2          22 MLKTLEEKTECKIFVAR-----N--------G-----------RIHLECPNED-----LEAIAVMAIKIID   63 (87)
T ss_dssp             HHHHHHHHHCCEEEEET-----T--------T-----------EEEEECSCHH-----HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCEEEECC-----C--------c-----------EEEEEeCCHH-----HHHHHHHHHHHHH
Confidence            68999999999999911     0        1           4889887666     3566666665553

>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: HnRNP K, KH3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.06  E-value=0.28  Score=30.58  Aligned_cols=47  Identities=17%  Similarity=0.185  Sum_probs=30.3

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLL   72 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL   72 (160)
                      |+|+|+++|||+|.|-...              ++   .+ +--|.|++. ++     .+.+|...|..++
T Consensus        25 ~I~~I~~~sga~I~i~~~~--------------~~---~~-~r~i~I~G~-~~-----~v~~A~~~I~~~i   71 (75)
T d1zzka1          25 RIKQIRHESGASIKIDEPL--------------EG---SE-DRIITITGT-QD-----QIQNAQYLLQNSV   71 (75)
T ss_dssp             HHHHHHHHHCCEEEECCTT--------------SC---SS-EEEEEEEEC-HH-----HHHHHHHHHHHHH
T ss_pred             hHHHHHhhcCCeEEEccCC--------------CC---CC-ceEEEEEeC-HH-----HHHHHHHHHHHHH
Confidence            6899999999999994210              11   11 224667773 44     4777777776654

>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Vigilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.92  E-value=0.15  Score=33.36  Aligned_cols=46  Identities=15%  Similarity=0.055  Sum_probs=32.2

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLV   73 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~   73 (160)
                      ++++|+++|||+|.|=..|+                   + +--|.|++. .+     .+++|...|..++.
T Consensus        31 ~i~~I~~~tg~~I~~p~~~~-------------------~-~~~v~I~G~-~~-----~V~~A~~~I~~~v~   76 (91)
T d2ctka1          31 GIRKMMDEFEVNIHVPAPEL-------------------Q-SDIIAITGL-AA-----NLDRAKAGLLERVK   76 (91)
T ss_dssp             HHHHHHHHTCCEEECCCTTT-------------------T-CCEEEEEEC-HH-----HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhCCEEEECCCCC-------------------C-cceEEEECC-HH-----HHHHHHHHHHHHHH
Confidence            68999999999999933211                   0 115778874 34     47788888877774

>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Vigilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.80  E-value=0.19  Score=31.42  Aligned_cols=45  Identities=9%  Similarity=0.119  Sum_probs=31.3

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLL   72 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL   72 (160)
                      |+++|+++|||+|.|-..++             +       +=-|.|++. ++     .+.+|.++|..+.
T Consensus        26 ~i~~I~~~tg~~I~i~~~~~-------------~-------~~~v~I~G~-~~-----~v~~A~~~I~~i~   70 (71)
T d1viga_          26 NINRIKDQYKVSVRIPPDSE-------------K-------SNLIRIEGD-PQ-----GVQQAKRELLELA   70 (71)
T ss_dssp             HHHHHHHHTCCEEECCCCCS-------------S-------SEEEEEEES-SH-----HHHHHHHHHHHTC
T ss_pred             hHHHHHHHhCCEEEeCCCCC-------------C-------CCEEEEECC-HH-----HHHHHHHHHHHHh
Confidence            78999999999999943211             0       114788884 44     4788888887653

>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Vigilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.63  E-value=0.16  Score=32.54  Aligned_cols=16  Identities=13%  Similarity=0.067  Sum_probs=14.6

Q ss_pred             cHHhhhHHhCCeEEEe
Q psy14719          2 TAKQLELETGCKIMVR   17 (160)
Q Consensus         2 TlK~LE~eTgcKI~IR   17 (160)
                      |+++|+++|||+|.|-
T Consensus        31 ~i~~I~~~tg~~I~~p   46 (81)
T d2ctma1          31 AIRKIMDEFKVDIRFP   46 (81)
T ss_dssp             HHHHHHHHHTCEEECC
T ss_pred             cHHHHHHHhCCEEEeC
Confidence            7899999999999983

>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Poly(RC)-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.54  E-value=0.36  Score=29.96  Aligned_cols=47  Identities=13%  Similarity=0.124  Sum_probs=30.5

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLL   72 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL   72 (160)
                      ++|+|+++|||+|.|-...              ++   . .+==|.|++. ++     .+.+|...|...|
T Consensus        23 ~I~~I~~~tga~I~i~~~~--------------~~---~-~~r~v~I~G~-~~-----~v~~A~~~I~~~i   69 (70)
T d1wvna1          23 NINEIRQMSGAQIKIANPV--------------EG---S-SGRQVTITGS-AA-----SISLAQYLINARL   69 (70)
T ss_dssp             HHHHHHHHHCCEEEECCCC--------------TT---C-SEEEEEEEEC-HH-----HHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCcEEEEcCCC--------------CC---C-CcEEEEEEeC-HH-----HHHHHHHHHHHHc
Confidence            6799999999999994310              11   1 1112667773 44     4788888886654

>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Exosome complex RNA-binding protein 1, ECR1
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=90.24  E-value=0.019  Score=36.67  Aligned_cols=43  Identities=16%  Similarity=0.268  Sum_probs=24.0

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhcc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLLV   73 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL~   73 (160)
                      |+|+||++|||+|.| +    .+                   =-|.|++.+.+     .+..|.+.|..+..
T Consensus        22 ~Ik~i~~~tg~~I~i-~----~~-------------------g~v~I~g~~~~-----~v~~A~~~I~~i~~   64 (69)
T d2je6i3          22 MYETLTSKSGCSIFV-A----NN-------------------GRIWATCPSRF-----SEEILIEAIRKIEN   64 (69)
T ss_dssp             HHHHHHTTC---CEE-C----TT-------------------SEEEC-----C-----TTCCTHHHHTTTTT
T ss_pred             HHHHHHHHHCCEEEE-c----CC-------------------CEEEEEeCCHH-----HHHHHHHHHHHHHH
Confidence            689999999999999 1    00                   14788886555     36677777766543

>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Fragile X mental retardation syndrome related protein 1, FXR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.69  E-value=0.2  Score=32.37  Aligned_cols=44  Identities=11%  Similarity=0.043  Sum_probs=32.1

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLL   72 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL   72 (160)
                      |.|+|+++|||+|.|--.                      ++=.|.|++.+.+     .+++|..+|+.+.
T Consensus        29 ~I~~I~~~tGa~i~i~~~----------------------~~g~v~I~g~~~e-----av~~A~~~Ie~~~   72 (78)
T d2cpqa1          29 NIQQARKVPGVTAIELDE----------------------DTGTFRIYGESAD-----AVKKARGFLEFVE   72 (78)
T ss_dssp             HHHHHHTSTTEEEEEEET----------------------TTTEEEEEESSHH-----HHHHHHHHHSCCC
T ss_pred             HHHHHHHhcCcEEEEecC----------------------CCceEEEEECCHH-----HHHHHHHHHHHhh
Confidence            689999999999987321                      0115888987766     5888888886543

>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Poly(RC)-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.47  E-value=0.55  Score=29.07  Aligned_cols=45  Identities=20%  Similarity=0.323  Sum_probs=30.4

Q ss_pred             cHHhhhHHhCCeEEEecCCCCCCchhhhhhCCCCCCcCCCCcceEEEEeeCcHHHHHHHHHHHHHHHhhhc
Q psy14719          2 TAKQLELETGCKIMVRGKGSMRDKKKEEANRGKPNWEHLSEELHVLISVEDTENRAELKLARAVEEVQKLL   72 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~kd~~~e~~~~g~p~~~~l~e~LHVlI~a~~~~~~a~~kl~~Av~~I~klL   72 (160)
                      |.|+|+++|||+|.|--.+             .|      +. -|.|++ +++     .+.+|...|..+|
T Consensus        25 ~I~~I~~~tga~I~i~~~~-------------~~------er-~v~I~G-~~~-----~v~~A~~~I~~~l   69 (71)
T d2axya1          25 SVKKMREESGARINISEGN-------------CP------ER-IITLAG-PTN-----AIFKAFAMIIDKL   69 (71)
T ss_dssp             HHHHHHHHHCCEEEECSSC-------------CS------EE-EEEEEE-CHH-----HHHHHHHHHHHHH
T ss_pred             hHHHHHHHhCCEEEEcCCC-------------CC------cc-eEEEEE-CHH-----HHHHHHHHHHHHh
Confidence            6799999999999984211             11      11 366777 344     4778888887665

>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Hypothetical protein APE0754
species: Aeropyrum pernix [TaxId: 56636]

Probab=85.42  E-value=1.1  Score=29.21  Aligned_cols=16  Identities=25%  Similarity=0.279  Sum_probs=14.8

Q ss_pred             cHHhhhHHhCCeEEEe
Q psy14719          2 TAKQLELETGCKIMVR   17 (160)
Q Consensus         2 TlK~LE~eTgcKI~IR   17 (160)
                      |.|+||++|||+|.|-
T Consensus        24 ~Ik~i~~~tg~~I~Id   39 (84)
T d1tuaa1          24 VKAEIMRRTGTVITVD   39 (84)
T ss_dssp             HHHHHHHHHTEEEEEE
T ss_pred             hHHHHHHHHCCEEEEE
Confidence            6899999999999994

>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Prokaryotic type KH domain (KH-domain type II)
family: Prokaryotic type KH domain (KH-domain type II)
domain: Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6
species: Streptomyces antibioticus [TaxId: 1890]

Probab=81.90  E-value=0.16  Score=30.97  Aligned_cols=21  Identities=24%  Similarity=0.563  Sum_probs=9.9

Q ss_pred             cHHhhhHHhCCeEEEecCCCC
Q psy14719          2 TAKQLELETGCKIMVRGKGSM   22 (160)
Q Consensus         2 TlK~LE~eTgcKI~IRGkGS~   22 (160)
                      |.|.|+++|||+|.|--.|.+
T Consensus        24 ~Ik~I~~~tga~I~i~ddg~v   44 (54)
T d1e3ha4          24 MINQIQEDTGAEITIEDDGTI   44 (54)
T ss_dssp             ---CHHHHSCCCC--------
T ss_pred             HHHHHHHHHCCEEEEeCCeEE
Confidence            679999999999999755444