Psyllid ID: psy14736

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-----
Protein Sequence
MGTVHTVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPTHMNNNINLARPRKQRAQGISAEHPGGG
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccccccccccccccccccccccHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MGTVHTVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDkfqsvfpyhnpvspthmnnninlarprkqraqgisaehpggg
Flexible Loop (DISEMBL)
mgtvhtvdemqsiLQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPTHMNNNINLARPRKQRaqgisaehpggg
Low Complexity Region (SEG)
MGTVHTVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPTHMNNNINLARPRKQRAQGISAEHPGGG
Disordered region (IsUnstruct)
**********************************IVQLRSHLDKFQSVFPYH*********************************
Disordered Region (DISOPRED)
*********MQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF************************************
Disordered Region (DISEMBL)
********EMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPTHMNNNINLARP****************
Disordered Region (DISPRO)
*****TVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYH*********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGTVHTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLDKFQSVFPYHNPVSPTHMNNNINLARPRKQRAQGISAEHPGGG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	85	2.2.26 [Sep-21-2011]
Q03043	1088	cGMP-dependent protein ki	no	N/A	0.458	0.035	0.564	5e-07
P0C605	671	cGMP-dependent protein ki	yes	N/A	0.729	0.092	0.424	7e-07
Q13976	671	cGMP-dependent protein ki	yes	N/A	0.729	0.092	0.424	7e-07
P00516	671	cGMP-dependent protein ki	yes	N/A	0.729	0.092	0.424	7e-07
O77676	671	cGMP-dependent protein ki	yes	N/A	0.729	0.092	0.424	7e-07

>sp|Q03043|KGP24_DROME cGMP-dependent protein kinase, isozyme 2 forms cD4/T1/T3A/T3B OS=Drosophila melanogaster GN=for PE=1 SV=3

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 33/39 (84%)

Query: 13  ILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPY 51
           I+QAKE KI+E++  ++ ++ EI +L+SHLDKFQSVFP+
Sbjct: 394 IIQAKELKIQEMQRALQFKDNEIAELKSHLDKFQSVFPF 432

Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1EC: 2

>sp|P0C605|KGP1_MOUSE cGMP-dependent protein kinase 1 OS=Mus musculus GN=Prkg1 PE=1 SV=1

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 11/73 (15%)

Query: 8  DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPTHMNNNINLA 67
          ++   IL  KE +I+ELE+++  + EEI +L+  L K QSV     PV  TH+       
Sbjct: 6  EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL----PVPSTHIG------ 55

Query: 68 RPRKQRAQGISAE 80
           PR  RAQGISAE
Sbjct: 56 -PRTTRAQGISAE 67

Serine/threonine protein kinasethat acts as key mediator of the nitric oxide (NO)/cGMP signaling pathway. GMP binding activates PRKG1, which phosphorylates serines and threonines on many cellular proteins. Numerous protein targets for PRKG1 phosphorylation are implicated in modulating cellular calcium, but the contribution of each of these targets may vary substantially among cell types. Proteins that are phosphorylated by PRKG1 regulate platelet activation and adhesion, smooth muscle contraction, cardiac function, gene expression, feedback of the NO-signaling pathway, and other processes involved in several aspects of the CNS like axon guidance, hippocampal and cerebellar learning, circadian rhythm and nociception. Smoth muscle relaxation is mediated through lowering of intracellular free calcium, by desensitization of contractile proteins to calcium, and by decrease in the contractile state of smooth muscle or in platelet activation. Regulates intracellular calcium levels via several pathways: phosphorylates MRVI1/IRAG and inhibits IP3-induced Ca(2+) release from intracellular stores, phosphorylation of KCNMA1 (BKCa) channels decreases intracellular Ca(2+) levels, which leads to increased opening of this channel. PRKG1 phosphorylates the canonical transient receptor potential channel (TRPC) family which inactivates the associated inward calcium current. Another mode of action of NO/cGMP/PKGI signaling involves PKGI-mediated inactivation of the Ras homolog gene family member A (RhoA). Phosphorylation of RHOA by PRKG1 blocks the action of this protein in myriad processes: regulation of RHOA translocation; decreasing contraction; controlling vesicle trafficking, reduction of myosin light chain phosphorylation resulting in vasorelaxation. Activation of PRKG1 by NO signaling alters also gene expression in a number of tissues. In smooth muscle cells, increased cGMP and PRKG1 activity influence expression of smooth muscle-specific contractile proteins, levels of proteins in the NO/cGMP signaling pathway, down-regulation of the matrix proteins osteopontin and thrombospondin-1 to limit smooth muscle cell migration and phenotype. Regulates vasodilator-stimulated phosphoprotein (VASP) functions in platelets and smooth muscle.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q13976|KGP1_HUMAN cGMP-dependent protein kinase 1 OS=Homo sapiens GN=PRKG1 PE=1 SV=3

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 11/73 (15%)

Query: 8  DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPTHMNNNINLA 67
          ++   IL  KE +I+ELE+++  + EEI +L+  L K QSV     PV  TH+       
Sbjct: 6  EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL----PVPSTHIG------ 55

Query: 68 RPRKQRAQGISAE 80
           PR  RAQGISAE
Sbjct: 56 -PRTTRAQGISAE 67

Serine/threonine protein kinasethat acts as key mediator of the nitric oxide (NO)/cGMP signaling pathway. GMP binding activates PRKG1, which phosphorylates serines and threonines on many cellular proteins. Numerous protein targets for PRKG1 phosphorylation are implicated in modulating cellular calcium, but the contribution of each of these targets may vary substantially among cell types. Proteins that are phosphorylated by PRKG1 regulate platelet activation and adhesion, smooth muscle contraction, cardiac function, gene expression, feedback of the NO-signaling pathway, and other processes involved in several aspects of the CNS like axon guidance, hippocampal and cerebellar learning, circadian rhythm and nociception. Smoth muscle relaxation is mediated through lowering of intracellular free calcium, by desensitization of contractile proteins to calcium, and by decrease in the contractile state of smooth muscle or in platelet activation. Regulates intracellular calcium levels via several pathways: phosphorylates MRVI1/IRAG and inhibits IP3-induced Ca(2+) release from intracellular stores, phosphorylation of KCNMA1 (BKCa) channels decreases intracellular Ca(2+) levels, which leads to increased opening of this channel. PRKG1 phosphorylates the canonical transient receptor potential channel (TRPC) family which inactivates the associated inward calcium current. Another mode of action of NO/cGMP/PKGI signaling involves PKGI-mediated inactivation of the Ras homolog gene family member A (RhoA). Phosphorylation of RHOA by PRKG1 blocks the action of this protein in myriad processes: regulation of RHOA translocation; decreasing contraction; controlling vesicle trafficking, reduction of myosin light chain phosphorylation resulting in vasorelaxation. Activation of PRKG1 by NO signaling alters also gene expression in a number of tissues. In smooth muscle cells, increased cGMP and PRKG1 activity influence expression of smooth muscle-specific contractile proteins, levels of proteins in the NO/cGMP signaling pathway, down-regulation of the matrix proteins osteopontin and thrombospondin-1 to limit smooth muscle cell migration and phenotype. Regulates vasodilator-stimulated phosphoprotein (VASP) functions in platelets and smooth muscle.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 2

>sp|P00516|KGP1_BOVIN cGMP-dependent protein kinase 1 OS=Bos taurus GN=PRKG1 PE=1 SV=2

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 11/73 (15%)

Query: 8  DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPTHMNNNINLA 67
          ++   IL  KE +I+ELE+++  + EEI +L+  L K QSV     PV  TH+       
Sbjct: 6  EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL----PVPSTHIG------ 55

Query: 68 RPRKQRAQGISAE 80
           PR  RAQGISAE
Sbjct: 56 -PRTTRAQGISAE 67

Serine/threonine protein kinasethat acts as key mediator of the nitric oxide (NO)/cGMP signaling pathway. GMP binding activates PRKG1, which phosphorylates serines and threonines on many cellular proteins. Numerous protein targets for PRKG1 phosphorylation are implicated in modulating cellular calcium, but the contribution of each of these targets may vary substantially among cell types. Proteins that are phosphorylated by PRKG1 regulate platelet activation and adhesion, smooth muscle contraction, cardiac function, gene expression, feedback of the NO-signaling pathway, and other processes involved in several aspects of the CNS like axon guidance, hippocampal and cerebellar learning, circadian rhythm and nociception. Smoth muscle relaxation is mediated through lowering of intracellular free calcium, by desensitization of contractile proteins to calcium, and by decrease in the contractile state of smooth muscle or in platelet activation. Regulates intracellular calcium levels via several pathways: phosphorylates MRVI1/IRAG and inhibits IP3-induced Ca(2+) release from intracellular stores, phosphorylation of KCNMA1 (BKCa) channels decreases intracellular Ca(2+) levels, which leads to increased opening of this channel. PRKG1 phosphorylates the canonical transient receptor potential channel (TRPC) family which inactivates the associated inward calcium current. Another mode of action of NO/cGMP/PKGI signaling involves PKGI-mediated inactivation of the Ras homolog gene family member A (RhoA). Phosphorylation of RHOA by PRKG1 blocks the action of this protein in myriad processes: regulation of RHOA translocation; decreasing contraction; controlling vesicle trafficking, reduction of myosin light chain phosphorylation resulting in vasorelaxation. Activation of PRKG1 by NO signaling alters also gene expression in a number of tissues. In smooth muscle cells, increased cGMP and PRKG1 activity influence expression of smooth muscle-specific contractile proteins, levels of proteins in the NO/cGMP signaling pathway, down-regulation of the matrix proteins osteopontin and thrombospondin-1 to limit smooth muscle cell migration and phenotype. Regulates vasodilator-stimulated phosphoprotein (VASP) functions in platelets and smooth muscle.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 2

>sp|O77676|KGP1_RABIT cGMP-dependent protein kinase 1 OS=Oryctolagus cuniculus GN=PRKG1 PE=1 SV=3

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 11/73 (15%)

Query: 8  DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPTHMNNNINLA 67
          ++   IL  KE +I+ELE+++  + EEI +L+  L K QSV     PV  TH+       
Sbjct: 6  EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL----PVPSTHIG------ 55

Query: 68 RPRKQRAQGISAE 80
           PR  RAQGISAE
Sbjct: 56 -PRTTRAQGISAE 67

Serine/threonine protein kinasethat acts as key mediator of the nitric oxide (NO)/cGMP signaling pathway. GMP binding activates PRKG1, which phosphorylates serines and threonines on many cellular proteins. Numerous protein targets for PRKG1 phosphorylation are implicated in modulating cellular calcium, but the contribution of each of these targets may vary substantially among cell types. Proteins that are phosphorylated by PRKG1 regulate platelet activation and adhesion, smooth muscle contraction, cardiac function, gene expression, feedback of the NO-signaling pathway, and other processes involved in several aspects of the CNS like axon guidance, hippocampal and cerebellar learning, circadian rhythm and nociception. Smoth muscle relaxation is mediated through lowering of intracellular free calcium, by desensitization of contractile proteins to calcium, and by decrease in the contractile state of smooth muscle or in platelet activation. Regulates intracellular calcium levels via several pathways: phosphorylates MRVI1/IRAG and inhibits IP3-induced Ca(2+) release from intracellular stores, phosphorylation of KCNMA1 (BKCa) channels decreases intracellular Ca(2+) levels, which leads to increased opening of this channel. PRKG1 phosphorylates the canonical transient receptor potential channel (TRPC) family which inactivates the associated inward calcium current. Another mode of action of NO/cGMP/PKGI signaling involves PKGI-mediated inactivation of the Ras homolog gene family member A (RhoA). Phosphorylation of RHOA by PRKG1 blocks the action of this protein in myriad processes: regulation of RHOA translocation; decreasing contraction; controlling vesicle trafficking, reduction of myosin light chain phosphorylation resulting in vasorelaxation. Activation of PRKG1 by NO signaling alters also gene expression in a number of tissues. In smooth muscle cells, increased cGMP and PRKG1 activity influence expression of smooth muscle-specific contractile proteins, levels of proteins in the NO/cGMP signaling pathway, down-regulation of the matrix proteins osteopontin and thrombospondin-1 to limit smooth muscle cell migration and phenotype. Regulates vasodilator-stimulated phosphoprotein (VASP) functions in platelets and smooth muscle.

Oryctolagus cuniculus (taxid: 9986)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
242009006	152	conserved hypothetical protein [Pediculu	0.882	0.493	0.571	7e-15
189240304	727	PREDICTED: similar to foraging CG10033-P	0.858	0.100	0.589	8e-15
270012366	312	hypothetical protein TcasGA2_TC006509 [T	0.858	0.233	0.589	4e-14
375364635	776	cGMP-dependent protein kinase foraging i	0.847	0.092	0.459	6e-14
340723955	722	PREDICTED: cGMP-dependent protein kinase	0.823	0.096	0.519	2e-13
350422649	668	PREDICTED: cGMP-dependent protein kinase	0.823	0.104	0.519	2e-13
239946290	668	cGMP-dependent protein kinase foraging [	0.823	0.104	0.519	2e-13
328714481	265	PREDICTED: cGMP-dependent protein kinase	0.847	0.271	0.459	3e-13
383857827	721	PREDICTED: cGMP-dependent protein kinase	0.823	0.097	0.506	4e-13
225618775	668	cGMP dependent protein kinase [Bombus ig	0.823	0.104	0.506	1e-12

>gi|242009006|ref|XP_002425284.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212509049|gb|EEB12546.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 84.3 bits (207), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 57/77 (74%), Gaps = 2/77 (2%)

Query: 6   TVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPTHMN--NN 63
           +V E+Q+IL  K+ +IRELE ++ +Q +EI +LRS LDKFQSVFPY+   SP H++  NN
Sbjct: 53  SVTELQTILSMKDERIRELENQINLQEKEINELRSQLDKFQSVFPYYLASSPGHLSPLNN 112

Query: 64  INLARPRKQRAQGISAE 80
               R RKQRAQGISAE
Sbjct: 113 NYQPRARKQRAQGISAE 129

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240304|ref|XP_973707.2| PREDICTED: similar to foraging CG10033-PA [Tribolium castaneum]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 46/78 (58%), Positives = 58/78 (74%), Gaps = 5/78 (6%)

Query: 6   TVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPTH---MNN 62
           +VDE+Q++L  KE+KI+EL + V+ ++ EI  LRS LDKFQSV P +NP SP H   +NN
Sbjct: 48  SVDELQALLAEKETKIQELTKLVQQKDLEITNLRSQLDKFQSVLPLYNPTSPKHYVGLNN 107

Query: 63  NINLARPRKQRAQGISAE 80
           N  L RPRKQRA GISAE
Sbjct: 108 NAVL-RPRKQRA-GISAE 123

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270012366|gb|EFA08814.1| hypothetical protein TcasGA2_TC006509 [Tribolium castaneum]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 58/78 (74%), Gaps = 5/78 (6%)

Query: 6   TVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPTH---MNN 62
           +VDE+Q++L  KE+KI+EL + V+ ++ EI  LRS LDKFQSV P +NP SP H   +NN
Sbjct: 48  SVDELQALLAEKETKIQELTKLVQQKDLEITNLRSQLDKFQSVLPLYNPTSPKHYVGLNN 107

Query: 63  NINLARPRKQRAQGISAE 80
           N  L RPRKQRA GISAE
Sbjct: 108 NAVL-RPRKQRA-GISAE 123

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|375364635|gb|AFA55181.1| cGMP-dependent protein kinase foraging isozyme 2 variant 1 [Acyrthosiphon pisum]

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/98 (45%), Positives = 59/98 (60%), Gaps = 26/98 (26%)

Query: 9   EMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPT---------- 58
           +++++L+AK++ IR LE  ++ +N EI +LRSHLD FQSVFP+ NPVSPT          
Sbjct: 80  DLKTLLEAKDTLIRNLETLLQARNNEIQELRSHLDMFQSVFPFSNPVSPTSTLHHPHHVV 139

Query: 59  ----HMNNNINL------------ARPRKQRAQGISAE 80
               H   + NL            ARPRKQRAQGISAE
Sbjct: 140 AAPVHQQQSQNLVAKSLTSLLDGIARPRKQRAQGISAE 177

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723955|ref|XP_003400352.1| PREDICTED: cGMP-dependent protein kinase, isozyme 2 forms cD4/T1/T3A/T3B [Bombus terrestris]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 53/77 (68%), Gaps = 7/77 (9%)

Query: 6   TVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPTHMNNNIN 65
           T+ E+Q +L+ K+ KI ELE  +  ++ EI +LRSHLDKF SV P+ +P++PT       
Sbjct: 57  TLRELQELLRVKDEKITELEALLCRRDAEIQELRSHLDKFLSVLPFKSPLTPTK------ 110

Query: 66  LARPRKQRAQGISAEHP 82
             RPRKQRAQGISAE P
Sbjct: 111 -PRPRKQRAQGISAEPP 126

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422649|ref|XP_003493238.1| PREDICTED: cGMP-dependent protein kinase, isozyme 2 forms cD4/T1/T3A/T3B-like [Bombus impatiens]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 53/77 (68%), Gaps = 7/77 (9%)

Query: 6  TVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPTHMNNNIN 65
          T+ E+Q +L+ K+ KI ELE  +  ++ EI +LRSHLDKF SV P+ +P++PT       
Sbjct: 3  TLRELQELLRVKDEKITELEALLCRRDAEIQELRSHLDKFLSVLPFKSPLTPTK------ 56

Query: 66 LARPRKQRAQGISAEHP 82
            RPRKQRAQGISAE P
Sbjct: 57 -PRPRKQRAQGISAEPP 72

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239946290|gb|ACS36224.1| cGMP-dependent protein kinase foraging [Bombus terrestris]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 53/77 (68%), Gaps = 7/77 (9%)

Query: 6  TVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPTHMNNNIN 65
          T+ E+Q +L+ K+ KI ELE  +  ++ EI +LRSHLDKF SV P+ +P++PT       
Sbjct: 3  TLRELQELLRVKDEKITELEALLCRRDAEIQELRSHLDKFLSVLPFKSPLTPTK------ 56

Query: 66 LARPRKQRAQGISAEHP 82
            RPRKQRAQGISAE P
Sbjct: 57 -PRPRKQRAQGISAEPP 72

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328714481|ref|XP_001946603.2| PREDICTED: cGMP-dependent protein kinase, isozyme 2 forms cD4/T1/T3A/T3B-like [Acyrthosiphon pisum]

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 59/98 (60%), Gaps = 26/98 (26%)

Query: 9   EMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPT---------- 58
           +++++L+AK++ IR LE  ++ +N EI +LRSHLD FQSVFP+ NPVSPT          
Sbjct: 80  DLKTLLEAKDTLIRNLETLLQARNNEIQELRSHLDMFQSVFPFSNPVSPTSTLHHPHHVV 139

Query: 59  ----HMNNNINL------------ARPRKQRAQGISAE 80
               H   + NL            ARPRKQRAQGISAE
Sbjct: 140 AAPVHQQQSQNLVAKSLTSLLDGIARPRKQRAQGISAE 177

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857827|ref|XP_003704405.1| PREDICTED: cGMP-dependent protein kinase, isozyme 2 forms cD4/T1/T3A/T3B-like [Megachile rotundata]

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 53/77 (68%), Gaps = 7/77 (9%)

Query: 6   TVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPTHMNNNIN 65
           T+ E+Q +L+ K+ +I ELE  +  ++ EI +LRSHLDKF SV P+ +P++PT       
Sbjct: 56  TLRELQELLRVKDERIAELEALLCRRDAEIQELRSHLDKFLSVLPFKSPLTPTK------ 109

Query: 66  LARPRKQRAQGISAEHP 82
             RPRKQRAQGISAE P
Sbjct: 110 -PRPRKQRAQGISAEPP 125

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225618775|dbj|BAH29963.1| cGMP dependent protein kinase [Bombus ignitus]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 52/77 (67%), Gaps = 7/77 (9%)

Query: 6  TVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPTHMNNNIN 65
          T+ E+Q +L+ K+ KI ELE  +  ++ EI +LRSHLDKF SV P+ +P++PT       
Sbjct: 3  TLRELQELLRVKDEKITELEALLCRRDAEIQELRSHLDKFLSVLPFKSPLTPTK------ 56

Query: 66 LARPRKQRAQGISAEHP 82
            RPRKQRAQGI AE P
Sbjct: 57 -PRPRKQRAQGIFAEPP 72

Source: Bombus ignitus

Species: Bombus ignitus

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
FB|FBgn0000721	1088	for "foraging" [Drosophila mel	0.458	0.035	0.564	8.2e-08
UNIPROTKB|P00516	671	PRKG1 "cGMP-dependent protein	0.729	0.092	0.424	5.8e-06
UNIPROTKB|Q13976	671	PRKG1 "cGMP-dependent protein	0.729	0.092	0.424	5.8e-06
UNIPROTKB|O77676	671	PRKG1 "cGMP-dependent protein	0.729	0.092	0.424	5.8e-06
MGI|MGI:108174	671	Prkg1 "protein kinase, cGMP-de	0.729	0.092	0.424	5.8e-06
UNIPROTKB|Q5SQU3	659	PRKG1 "cGMP-dependent protein	0.623	0.080	0.453	6.7e-05

FB|FBgn0000721 for "foraging" [Drosophila melanogaster (taxid:7227)]

 Score = 123 (48.4 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
 Identities = 22/39 (56%), Positives = 33/39 (84%)

Query:    13 ILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPY 51
             I+QAKE KI+E++  ++ ++ EI +L+SHLDKFQSVFP+
Sbjct:   394 IIQAKELKIQEMQRALQFKDNEIAELKSHLDKFQSVFPF 432

GO:0004690 "cyclic nucleotide-dependent protein kinase activity" evidence=ISS

GO:0030536 "larval feeding behavior" evidence=IMP;TAS

GO:0004692 "cGMP-dependent protein kinase activity" evidence=NAS;IDA

GO:0006468 "protein phosphorylation" evidence=NAS;IDA

GO:0008345 "larval locomotory behavior" evidence=IMP

GO:0046959 "habituation" evidence=IMP

GO:0004674 "protein serine/threonine kinase activity" evidence=NAS

GO:0007631 "feeding behavior" evidence=TAS

GO:0008016 "regulation of heart contraction" evidence=IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=IDA

GO:0007616 "long-term memory" evidence=IMP

GO:0007614 "short-term memory" evidence=IMP

GO:0032095 "regulation of response to food" evidence=IMP

UNIPROTKB|P00516 PRKG1 "cGMP-dependent protein kinase 1" [Bos taurus (taxid:9913)]

 Score = 116 (45.9 bits), Expect = 5.8e-06, P = 5.8e-06
 Identities = 31/73 (42%), Positives = 42/73 (57%)

Query:     8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPTHMNNNINLA 67
             ++   IL  KE +I+ELE+++  + EEI +L+  L K QSV P    V  TH+       
Sbjct:     6 EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP----VPSTHIG------ 55

Query:    68 RPRKQRAQGISAE 80
              PR  RAQGISAE
Sbjct:    56 -PRTTRAQGISAE 67

GO:0005829 "cytosol" evidence=TAS

GO:0043087 "regulation of GTPase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005246 "calcium channel regulator activity" evidence=ISS

GO:0004692 "cGMP-dependent protein kinase activity" evidence=ISS

GO:0090331 "negative regulation of platelet aggregation" evidence=ISS

GO:0030553 "cGMP binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q13976 PRKG1 "cGMP-dependent protein kinase 1" [Homo sapiens (taxid:9606)]

 Score = 116 (45.9 bits), Expect = 5.8e-06, P = 5.8e-06
 Identities = 31/73 (42%), Positives = 42/73 (57%)

Query:     8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPTHMNNNINLA 67
             ++   IL  KE +I+ELE+++  + EEI +L+  L K QSV P    V  TH+       
Sbjct:     6 EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP----VPSTHIG------ 55

Query:    68 RPRKQRAQGISAE 80
              PR  RAQGISAE
Sbjct:    56 -PRTTRAQGISAE 67

GO:0005524 "ATP binding" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

GO:0030553 "cGMP binding" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0004692 "cGMP-dependent protein kinase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005246 "calcium channel regulator activity" evidence=IDA

GO:0090331 "negative regulation of platelet aggregation" evidence=IMP

GO:0043087 "regulation of GTPase activity" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=TAS

GO:0006468 "protein phosphorylation" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

UNIPROTKB|O77676 PRKG1 "cGMP-dependent protein kinase 1" [Oryctolagus cuniculus (taxid:9986)]

 Score = 116 (45.9 bits), Expect = 5.8e-06, P = 5.8e-06
 Identities = 31/73 (42%), Positives = 42/73 (57%)

Query:     8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPTHMNNNINLA 67
             ++   IL  KE +I+ELE+++  + EEI +L+  L K QSV P    V  TH+       
Sbjct:     6 EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP----VPSTHIG------ 55

Query:    68 RPRKQRAQGISAE 80
              PR  RAQGISAE
Sbjct:    56 -PRTTRAQGISAE 67

GO:0004692 "cGMP-dependent protein kinase activity" evidence=ISS

GO:0005246 "calcium channel regulator activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0043087 "regulation of GTPase activity" evidence=ISS

GO:0090331 "negative regulation of platelet aggregation" evidence=ISS

MGI|MGI:108174 Prkg1 "protein kinase, cGMP-dependent, type I" [Mus musculus (taxid:10090)]

 Score = 116 (45.9 bits), Expect = 5.8e-06, P = 5.8e-06
 Identities = 31/73 (42%), Positives = 42/73 (57%)

Query:     8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPTHMNNNINLA 67
             ++   IL  KE +I+ELE+++  + EEI +L+  L K QSV P    V  TH+       
Sbjct:     6 EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP----VPSTHIG------ 55

Query:    68 RPRKQRAQGISAE 80
              PR  RAQGISAE
Sbjct:    56 -PRTTRAQGISAE 67

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001764 "neuron migration" evidence=IMP

GO:0003824 "catalytic activity" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004692 "cGMP-dependent protein kinase activity" evidence=ISO;IDA

GO:0005246 "calcium channel regulator activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO;IDA;IMP

GO:0006468 "protein phosphorylation" evidence=IEA;IDA

GO:0007165 "signal transduction" evidence=IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016358 "dendrite development" evidence=IMP

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030553 "cGMP binding" evidence=IDA

GO:0030900 "forebrain development" evidence=IMP

GO:0043087 "regulation of GTPase activity" evidence=ISO

GO:0090331 "negative regulation of platelet aggregation" evidence=ISO

UNIPROTKB|Q5SQU3 PRKG1 "cGMP-dependent protein kinase 1" [Homo sapiens (taxid:9606)]

 Score = 106 (42.4 bits), Expect = 6.7e-05, P = 6.7e-05
 Identities = 29/64 (45%), Positives = 38/64 (59%)

Query:    17 KESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPTHMNNNINLARPRKQRAQG 76
             KE +I+ELE+++  + EEI +L+  L K QSV P    V  TH+        PR  RAQG
Sbjct:     3 KEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP----VPSTHIG-------PRTTRAQG 51

Query:    77 ISAE 80
             ISAE
Sbjct:    52 ISAE 55


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.129   0.359    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       85        85   0.00091  102 3  11 23  0.49    29
                                                     29  0.46    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  487 (52 KB)
  Total size of DFA:  93 KB (2069 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.45u 0.09s 17.54t   Elapsed:  00:00:03
  Total cpu time:  17.45u 0.09s 17.54t   Elapsed:  00:00:03
  Start:  Thu Aug 15 15:34:17 2013   End:  Thu Aug 15 15:34:20 2013

GO:0004692 "cGMP-dependent protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	85
cd12085	48	cd12085, DD_cGKI-alpha, Dimerization/Docking domai	1e-17
cd12083	48	cd12083, DD_cGKI, Dimerization/Docking domain of C	1e-14

>gnl|CDD|213374 cd12085, DD_cGKI-alpha, Dimerization/Docking domain of Cyclic GMP-dependent Protein Kinase I alpha

 Score = 68.8 bits (169), Expect = 1e-17
 Identities = 28/46 (60%), Positives = 40/46 (86%)

Query: 6  TVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPY 51
          +V+E+Q +LQAKE +IRELE+ ++ ++EEI +LRS LDKFQSVFP+
Sbjct: 3  SVEELQKLLQAKEERIRELEQLLQQRDEEIQELRSQLDKFQSVFPF 48

Cyclic GMP-dependent Protein Kinase I (PKG1 or cGKI) is a Serine/Threonine Kinase (STK), catalyzing the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. They contain an N-terminal regulatory domain containing a dimerization/docking region and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. The dimerization/docking (D/D) domain is a leucine/isoleucine zipper that mediates both homodimerization and interaction with isotype-specific G-kinase-anchoring proteins (GKAPs). The D/D domain of the two variants (alpha and beta) differ, allowing for their targeting to different subcellular compartments and intracellular substrates. cGKI-alpha specifically binds to myosin light chain phosphatase targeting subunit (MYPT1) and the regulator of G-protein signaling-2 (RGS-2). cGKI-alpha activates the phosphatase activity of MYPT1, resulting in vasorelaxation. It increases the activity of RGS-2 toward G proteins, with implications in the downstream signaling for vasoconstrictive agents. Length = 48

>gnl|CDD|213373 cd12083, DD_cGKI, Dimerization/Docking domain of Cyclic GMP-dependent Protein Kinase I

 Score = 61.4 bits (150), Expect = 1e-14
 Identities = 22/45 (48%), Positives = 34/45 (75%)

Query: 7  VDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPY 51
          ++E    L+ K+ +IRELE++++ ++EEI +LRS LDKFQSV P 
Sbjct: 4  LEEKTEELRKKDERIRELEQELQEKDEEIQELRSQLDKFQSVLPP 48

Cyclic GMP-dependent Protein Kinase I (PKG1 or cGKI) is a Serine/Threonine Kinase (STK), catalyzing the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. They contain an N-terminal regulatory domain containing a dimerization/docking region and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. It is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. The dimerization/docking (D/D) domain is a leucine/isoleucine zipper that mediates both homodimerization and interaction with isotype-specific G-kinase-anchoring proteins (GKAPs). The D/D domain of the two variants (alpha and beta) differ, allowing their targeting to different subcellular compartments and intracellular substrates. Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	85
KOG0614|consensus	732		98.09
PF04859	131	DUF641: Plant protein of unknown function (DUF641)	95.76
PF05983	162	Med7: MED7 protein; InterPro: IPR009244 The Mediat	92.74
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	91.47
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	91.13
PRK00295	68	hypothetical protein; Provisional	90.21
PF11365	96	DUF3166: Protein of unknown function (DUF3166); In	89.7
PRK00736	68	hypothetical protein; Provisional	89.5
PRK04406	75	hypothetical protein; Provisional	89.32
PRK04325	74	hypothetical protein; Provisional	88.92
PRK02793	72	phi X174 lysis protein; Provisional	88.77
PRK02119	73	hypothetical protein; Provisional	88.57
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	87.98
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	86.81
PF04568	100	IATP: Mitochondrial ATPase inhibitor, IATP; InterP	86.61
PHA03011	120	hypothetical protein; Provisional	86.23
PRK03947	140	prefoldin subunit alpha; Reviewed	84.57
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	84.43
PRK00846	77	hypothetical protein; Provisional	84.04
PF11544	76	Spc42p: Spindle pole body component Spc42p; InterP	83.6
KOG4552|consensus	272		82.51
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	82.43
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	82.3
TIGR02209	85	ftsL_broad cell division protein FtsL. This model	81.79
PF13815	118	Dzip-like_N: Iguana/Dzip1-like DAZ-interacting pro	81.75
PRK11637	428	AmiB activator; Provisional	81.55
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	81.49
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	81.42
PRK00888	105	ftsB cell division protein FtsB; Reviewed	81.41
COG2433	652	Uncharacterized conserved protein [Function unknow	81.36
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	81.18
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	80.72
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	80.53
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	80.06

>KOG0614|consensus

Probab=98.09  E-value=8.6e-06  Score=67.66  Aligned_cols=38  Identities=32%  Similarity=0.543  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCC
Q psy14736         13 ILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFP   50 (85)
Q Consensus        13 ~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~   50 (85)
                      .|++++..+.+|.++++.++.+|++|.++|||+|++.|
T Consensus        39 elr~rqt~~~~l~~~~~~~~~~i~~ltnel~k~r~~~p   76 (732)
T KOG0614|consen   39 ELRQRQTILEELIKEISKLEGEIAKLTNELDKLRSVLP   76 (732)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcCCc
Confidence            34677788889999999999999999999999999774

>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function

Probab=95.76  E-value=0.042  Score=37.98  Aligned_cols=42  Identities=29%  Similarity=0.552  Sum_probs=38.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736          6 TVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS   47 (85)
Q Consensus         6 ~~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs   47 (85)
                      ...+++.+++-.+..+.+|+.+++.||.+|..|+.+|+-..+
T Consensus        81 ~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~  122 (131)
T PF04859_consen   81 EIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNR  122 (131)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357889999999999999999999999999999999998764

>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=92.74  E-value=0.23  Score=34.94  Aligned_cols=35  Identities=34%  Similarity=0.489  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736         15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF   49 (85)
Q Consensus        15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~   49 (85)
                      |+++..|.-|+.+++++.++|..++..+++.++++
T Consensus       127 QARetLi~~me~Ql~~kr~~i~~i~~~~~~~~~~l  161 (162)
T PF05983_consen  127 QARETLIMMMEEQLEEKREEIEEIRKVCEKAREVL  161 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            79999999999999999999999999999998875

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=91.47  E-value=1.4  Score=26.73  Aligned_cols=45  Identities=24%  Similarity=0.327  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCCC
Q psy14736          8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYH   52 (85)
Q Consensus         8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~~   52 (85)
                      .+|+.-|-..+..|++|...+.+....|..|+.+|..+..-+...
T Consensus         7 ~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~   51 (69)
T PF04102_consen    7 EELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL   51 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            678888889999999999999999999999999998888766543

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=91.13  E-value=1.7  Score=26.32  Aligned_cols=35  Identities=29%  Similarity=0.414  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736         13 ILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS   47 (85)
Q Consensus        13 ~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs   47 (85)
                      ........+.+-+++..+...+|..|+.+++.+|+
T Consensus        26 ~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~   60 (61)
T PF08826_consen   26 ANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33466777888888888889999999999988886

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PRK00295 hypothetical protein; Provisional

Probab=90.21  E-value=2  Score=26.26  Aligned_cols=43  Identities=19%  Similarity=0.230  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736          7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF   49 (85)
Q Consensus         7 ~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~   49 (85)
                      ..+|+.-+-..+..|++|...+.+.+.+|..|+.+|..+..-+
T Consensus         7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl   49 (68)
T PRK00295          7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQ   49 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3678888888899999999999999999999998887664433

>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function

Probab=89.70  E-value=2.2  Score=28.14  Aligned_cols=47  Identities=26%  Similarity=0.304  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCC
Q psy14736          7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHN   53 (85)
Q Consensus         7 ~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~~~   53 (85)
                      ..||+.-|+.-++.-.-|-+.+.+.+.+-..|..+|.||++-++...
T Consensus         3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d   49 (96)
T PF11365_consen    3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLD   49 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            47899999999999999999999999999999999999999875544

>PRK00736 hypothetical protein; Provisional

Probab=89.50  E-value=2.4  Score=25.86  Aligned_cols=43  Identities=26%  Similarity=0.438  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736          7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF   49 (85)
Q Consensus         7 ~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~   49 (85)
                      ..+|+.-+-..+..|++|...+.+....|..|+.+|.-+..-+
T Consensus         7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl   49 (68)
T PRK00736          7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF   49 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3677778888899999999999999999999998887665444

>PRK04406 hypothetical protein; Provisional

Probab=89.32  E-value=2.4  Score=26.44  Aligned_cols=42  Identities=17%  Similarity=0.303  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736          8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF   49 (85)
Q Consensus         8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~   49 (85)
                      .+|..-|-..+..|++|...+.+...+|..|+.+|..+..-+
T Consensus        14 ~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl   55 (75)
T PRK04406         14 NDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV   55 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567777778888899999999999988988888887664433

>PRK04325 hypothetical protein; Provisional

Probab=88.92  E-value=2.7  Score=26.05  Aligned_cols=40  Identities=23%  Similarity=0.264  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736          8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS   47 (85)
Q Consensus         8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs   47 (85)
                      .+|+.-+-..+..|++|...+.+...+|..|+.+|..+..
T Consensus        12 ~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~   51 (74)
T PRK04325         12 TELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQ   51 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677777788888999999999999999888888866543

>PRK02793 phi X174 lysis protein; Provisional

Probab=88.77  E-value=2.8  Score=25.81  Aligned_cols=42  Identities=31%  Similarity=0.432  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736          8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF   49 (85)
Q Consensus         8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~   49 (85)
                      .+|..-|-..+..|++|...+.+....|..|+.+|..+..-+
T Consensus        11 ~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl   52 (72)
T PRK02793         11 AELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKL   52 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567777778888899999999999888888888887664433

>PRK02119 hypothetical protein; Provisional

Probab=88.57  E-value=3  Score=25.83  Aligned_cols=42  Identities=17%  Similarity=0.226  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736          8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF   49 (85)
Q Consensus         8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~   49 (85)
                      .+|..-+-..+..|++|...+.+...+|..|+.+|..+..-+
T Consensus        12 ~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl   53 (73)
T PRK02119         12 AELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL   53 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567777778888899999999999999998888888765444

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=87.98  E-value=1.9  Score=33.63  Aligned_cols=17  Identities=29%  Similarity=0.522  Sum_probs=9.3

Q ss_pred             HHHHHHHHhHhhhhccC
Q psy14736         33 EEIVQLRSHLDKFQSVF   49 (85)
Q Consensus        33 ~eI~eL~~~ldK~rsv~   49 (85)
                      .||.+|+--++.++|.+
T Consensus       124 kEIkQLkQvieTmrssL  140 (305)
T PF15290_consen  124 KEIKQLKQVIETMRSSL  140 (305)
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            35555555555555555

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=86.81  E-value=2.4  Score=25.12  Aligned_cols=32  Identities=16%  Similarity=0.374  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736         15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ   46 (85)
Q Consensus        15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r   46 (85)
                      ......|..|+++++....++..|+.+++.++
T Consensus        20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~   51 (80)
T PF04977_consen   20 YQLNQEIAELQKEIEELKKENEELKEEIERLK   51 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45566788888888888888888888888773

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface

Probab=86.61  E-value=3.5  Score=27.23  Aligned_cols=35  Identities=29%  Similarity=0.508  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHh
Q psy14736          9 EMQSILQAKESKIRELEEKVKV----QNEEIVQLRSHLD   43 (85)
Q Consensus         9 ~lq~~l~~kd~~I~~Le~~l~e----kd~eI~eL~~~ld   43 (85)
                      +=+|+.+...+.++.|.+.|.+    ...+|.+|.++||
T Consensus        62 E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I~  100 (100)
T PF04568_consen   62 EEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHIE  100 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4455556666778888887777    7888888887775

It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.

>PHA03011 hypothetical protein; Provisional

Probab=86.23  E-value=3.2  Score=28.12  Aligned_cols=40  Identities=25%  Similarity=0.401  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736         10 MQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF   49 (85)
Q Consensus        10 lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~   49 (85)
                      |-...+.-+-.|..++..+++.|++|--|+.++||+..-+
T Consensus        76 L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~ni  115 (120)
T PHA03011         76 LLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENI  115 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence            3333456667788999999999999999999999987643

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=84.57  E-value=3.1  Score=27.82  Aligned_cols=42  Identities=14%  Similarity=0.343  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736          8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF   49 (85)
Q Consensus         8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~   49 (85)
                      .++..++...+.+|..|++.+...+..|..++.+++.+++++
T Consensus        90 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l  131 (140)
T PRK03947         90 KDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQEL  131 (140)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367788888889999999999999999999999999988766

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=84.43  E-value=4.3  Score=25.07  Aligned_cols=11  Identities=36%  Similarity=0.622  Sum_probs=4.1

Q ss_pred             HHHHHHHHHHH
Q psy14736         14 LQAKESKIREL   24 (85)
Q Consensus        14 l~~kd~~I~~L   24 (85)
                      |..+|+.|..|
T Consensus         7 l~EKDe~Ia~L   17 (74)
T PF12329_consen    7 LAEKDEQIAQL   17 (74)
T ss_pred             HHhHHHHHHHH
Confidence            33333333333

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PRK00846 hypothetical protein; Provisional

Probab=84.04  E-value=6.9  Score=24.74  Aligned_cols=36  Identities=17%  Similarity=0.138  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy14736          8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLD   43 (85)
Q Consensus         8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ld   43 (85)
                      .+|..-+-..+..|++|...+......|..|+.+|.
T Consensus        16 ~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~   51 (77)
T PRK00846         16 VELETRLSFQEQALTELSEALADARLTGARNAELIR   51 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566666677788888888888888888888877766

>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S

Probab=83.60  E-value=1.8  Score=27.55  Aligned_cols=30  Identities=23%  Similarity=0.324  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhccCC
Q psy14736         21 IRELEEKVKVQNEEIVQLRSHLDKFQSVFP   50 (85)
Q Consensus        21 I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~   50 (85)
                      -++|...|..+++||..|...+..||+.+.
T Consensus         7 Nk~L~~kL~~K~eEI~rLn~lv~sLR~KLi   36 (76)
T PF11544_consen    7 NKELKKKLNDKQEEIDRLNILVGSLRGKLI   36 (76)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666666666666666666666666553

cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.

>KOG4552|consensus

Probab=82.51  E-value=4  Score=30.95  Aligned_cols=35  Identities=31%  Similarity=0.481  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736         15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF   49 (85)
Q Consensus        15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~   49 (85)
                      ++.+..++.|++.+.-+|.+|++|+..|.....++
T Consensus        70 ~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iL  104 (272)
T KOG4552|consen   70 QKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVIL  104 (272)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            47778899999999999999999999988766554

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.43  E-value=5.2  Score=30.67  Aligned_cols=41  Identities=22%  Similarity=0.409  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736          8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSV   48 (85)
Q Consensus         8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv   48 (85)
                      .++|.-|...+..|.++...+++.+.+|.+++.++.+|+.-
T Consensus        48 ~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~e   88 (265)
T COG3883          48 KNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKE   88 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555666666666666666666666666666665543

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=82.30  E-value=5.1  Score=30.59  Aligned_cols=40  Identities=25%  Similarity=0.394  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736          9 EMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSV   48 (85)
Q Consensus         9 ~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv   48 (85)
                      .++..+++.++.++++..+++..+.++.+++++|++++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   42 (364)
T TIGR01242         3 ELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSP   42 (364)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            4556677888899999999999999999999999999864

Many proteins may score above the trusted cutoff because an internal

>TIGR02209 ftsL_broad cell division protein FtsL

Probab=81.79  E-value=7.6  Score=23.54  Aligned_cols=36  Identities=8%  Similarity=0.185  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736         12 SILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS   47 (85)
Q Consensus        12 ~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs   47 (85)
                      ..++.....+..++.+++..+++..+|+.++.++.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~   59 (85)
T TIGR02209        24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR   59 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            344667777888888888888888888888887665

This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.

>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal

Probab=81.75  E-value=5.9  Score=26.13  Aligned_cols=35  Identities=31%  Similarity=0.506  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736          8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHL   42 (85)
Q Consensus         8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~l   42 (85)
                      ..+...++.....+..++..+....++|..|+.|+
T Consensus        83 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~  117 (118)
T PF13815_consen   83 EQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES  117 (118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34444444555555555555555555555555543

>PRK11637 AmiB activator; Provisional

Probab=81.55  E-value=4.5  Score=31.78  Aligned_cols=40  Identities=13%  Similarity=0.283  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736         10 MQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF   49 (85)
Q Consensus        10 lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~   49 (85)
                      ++..|...+..|..++.++...+.+|..++.+|+..+..+
T Consensus        87 ~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l  126 (428)
T PRK11637         87 ASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL  126 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334445555566666666666666666666666655554

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=81.49  E-value=5.3  Score=34.12  Aligned_cols=46  Identities=15%  Similarity=0.348  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCC
Q psy14736          8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHN   53 (85)
Q Consensus         8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~~~   53 (85)
                      .||..+|-.-...|+.++..|..+|.||.+|+..|-.+-.|+|.-+
T Consensus       618 ldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~p~~~  663 (697)
T PF09726_consen  618 LDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVMPSDS  663 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            4677777666667899999999999999999999999999998733

; GO: 0016021 integral to membrane

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=81.42  E-value=5.5  Score=27.47  Aligned_cols=35  Identities=23%  Similarity=0.341  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736         15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF   49 (85)
Q Consensus        15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~   49 (85)
                      ...|..|.+|..++.+...++..|+.+|..+.+..
T Consensus        75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~  109 (169)
T PF07106_consen   75 AELDAEIKELREELAELKKEVKSLEAELASLSSEP  109 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            34455566666666666666666666666665543

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=81.41  E-value=5.2  Score=26.24  Aligned_cols=33  Identities=9%  Similarity=0.091  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736         15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS   47 (85)
Q Consensus        15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs   47 (85)
                      .+....+..++.+++..+.+...|+.+++.+++
T Consensus        30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~   62 (105)
T PRK00888         30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG   62 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            345556666666666666666666666666665

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=81.36  E-value=5.2  Score=34.13  Aligned_cols=42  Identities=21%  Similarity=0.396  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736          8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF   49 (85)
Q Consensus         8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~   49 (85)
                      ..+...+......+..|+.++.+++.+|..|.++|+.|+--+
T Consensus       425 ~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~  466 (652)
T COG2433         425 KKLEETVERLEEENSELKRELEELKREIEKLESELERFRREV  466 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556677788888888888888888888888888887544

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=81.18  E-value=2.4  Score=26.20  Aligned_cols=25  Identities=32%  Similarity=0.457  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736         23 ELEEKVKVQNEEIVQLRSHLDKFQS   47 (85)
Q Consensus        23 ~Le~~l~ekd~eI~eL~~~ldK~rs   47 (85)
                      .|++.|.++|+.|.+|..+..++..
T Consensus         2 sl~~~l~EKDe~Ia~L~eEGekLSk   26 (74)
T PF12329_consen    2 SLEKKLAEKDEQIAQLMEEGEKLSK   26 (74)
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            4678899999999999988887653

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=80.72  E-value=5  Score=25.85  Aligned_cols=42  Identities=10%  Similarity=0.362  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736          8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF   49 (85)
Q Consensus         8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~   49 (85)
                      .++..++...+..|..+++.++..++.|..+..+++.++..+
T Consensus        83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l  124 (129)
T cd00890          83 KSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEEL  124 (129)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667777778888888888888888888888888877654

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=80.53  E-value=10  Score=24.29  Aligned_cols=30  Identities=20%  Similarity=0.352  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736         16 AKESKIRELEEKVKVQNEEIVQLRSHLDKF   45 (85)
Q Consensus        16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~   45 (85)
                      .-+..|..+++.+...+.++.+++.+|.++
T Consensus        74 ~le~~i~~l~~~~~~l~~~~~elk~~l~~~  103 (105)
T cd00632          74 TIELRIKRLERQEEDLQEKLKELQEKIQQA  103 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555555555555555443

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=80.06  E-value=8.7  Score=26.87  Aligned_cols=49  Identities=18%  Similarity=0.341  Sum_probs=42.7

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCCC
Q psy14736          4 VHTVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYH   52 (85)
Q Consensus         4 ~~~~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~~   52 (85)
                      .+.+++|-..++..++.|..|...+...+..|.++++-++-+.++-.-.
T Consensus         5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~   53 (145)
T COG1730           5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAG   53 (145)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3466899999999999999999999999999999999999888766444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	85
1zxa_A	67	CGMP-dependent protein kinase 1, alpha isozyme; pa	1e-08
1fzc_C	319	Fibrin; blood coagulation, plasma protein, crossli	5e-04

>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens} Length = 67

 Score = 46.0 bits (108), Expect = 1e-08
 Identities = 18/44 (40%), Positives = 28/44 (63%)

Query: 8  DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPY 51
          ++   IL  KE +I+ELE+++  + EEI +L+  L K QSV P 
Sbjct: 14 EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLPV 57

>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ... Length = 319

 Score = 35.9 bits (83), Expect = 5e-04
 Identities = 11/67 (16%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 4  VHTVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPTHMNNN 63
          +  + + ++ +   +S IR L+E     N++IV L+  + + ++         P      
Sbjct: 3  LEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA-----QCQEPCKDTVQ 57

Query: 64 INLARPR 70
          I+    +
Sbjct: 58 IHDITGK 64

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	85
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	99.65
1zxa_A	67	CGMP-dependent protein kinase 1, alpha isozyme; pa	99.39
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	95.27
1ykh_A	108	RNA polymerase II mediator complex protein MED7; g	92.17
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	91.57
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	90.12
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	88.21
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	87.8
1t6f_A	37	Geminin; coiled-coil, cell cycle; 1.47A {Synthetic	87.72
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	87.66
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	87.01
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	86.69
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	85.7
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	85.31
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	85.28
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	84.08
3a7o_A	75	Autophagy protein 16; coiled-coil, coiled coil, cy	84.07
2q6q_A	74	Spindle POLE BODY component SPC42; SPC42P, budding	83.98
2ke4_A	98	CDC42-interacting protein 4; CIP4, TC10, coiled-co	83.95
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	82.97
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	80.97
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	80.68
1lwu_C	323	Fibrinogen gamma chain; heterotrimer, protein-pept	80.52

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=99.65  E-value=2.5e-16  Score=98.05  Aligned_cols=48  Identities=31%  Similarity=0.495  Sum_probs=43.8

Q ss_pred             CCccccHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCC
Q psy14736          1 MGTVHTVDEMQSIL-------QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPY   51 (85)
Q Consensus         1 ~~~~~~~~~lq~~l-------~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~   51 (85)
                      |||+   ++||++|       +++|++|++|+++|+++|++|++|+++||||||||||
T Consensus        18 mgti---~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl~p   72 (72)
T 3nmd_A           18 RGSL---RDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRSVIRP   72 (72)
T ss_dssp             -CHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC-
T ss_pred             CCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence            8998   9999999       6788899999999999999999999999999999975

>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}

Probab=99.39  E-value=3.4e-13  Score=82.87  Aligned_cols=49  Identities=37%  Similarity=0.584  Sum_probs=35.9

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCC
Q psy14736          5 HTVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHN   53 (85)
Q Consensus         5 ~~~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~~~   53 (85)
                      +++++|+.+|+.||+.|++||..|+++|++|++|+++||||+|||++.+
T Consensus        11 ~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~~~~   59 (67)
T 1zxa_A           11 ELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLPVPS   59 (67)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            4578999999999999999999999999999999999999999998665

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=95.27  E-value=0.027  Score=34.55  Aligned_cols=32  Identities=13%  Similarity=0.154  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736         18 ESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF   49 (85)
Q Consensus        18 d~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~   49 (85)
                      ++.|+..+..+++++.+|.++..+|..|++.+
T Consensus        32 ~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL   63 (72)
T 3nmd_A           32 IEELRQRDALIDELELELDQKDELIQMLQNEL   63 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567777778888888888888888888887

>1ykh_A RNA polymerase II mediator complex protein MED7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.2 PDB: 1yke_A

Probab=92.17  E-value=0.22  Score=32.52  Aligned_cols=35  Identities=26%  Similarity=0.350  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736         15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF   49 (85)
Q Consensus        15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~   49 (85)
                      |+++..|.-|+.+++++.++|++++..+|++++++
T Consensus        72 QARetL~~~le~Qi~~kr~e~~~i~~~~~~~~~~L  106 (108)
T 1ykh_A           72 QSRESLIMLLEEQLEYKRGEIREIEQVCKQVHDKL  106 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999876

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=91.57  E-value=0.71  Score=27.42  Aligned_cols=42  Identities=21%  Similarity=0.328  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736          8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF   49 (85)
Q Consensus         8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~   49 (85)
                      -++..+|-.-+..|..|-+-.....+|++.++++|.+++|+-
T Consensus        16 levK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen   57 (63)
T 2w6a_A           16 LELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAEN   57 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhh
Confidence            356777888999999999999999999999999999999853

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=90.12  E-value=0.51  Score=34.79  Aligned_cols=40  Identities=15%  Similarity=0.388  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736          8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS   47 (85)
Q Consensus         8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs   47 (85)
                      ++|+..+.....+.+.|...|.+...+|..|+.+|+++++
T Consensus        57 ~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s   96 (251)
T 3m9b_A           57 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ   96 (251)
T ss_dssp             HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            5777778888888888999999999999999999999997

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=88.21  E-value=1.4  Score=25.23  Aligned_cols=34  Identities=15%  Similarity=0.218  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736         16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF   49 (85)
Q Consensus        16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~   49 (85)
                      ..+..+..|+.+..+...+|..|+.++..+++.|
T Consensus        26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l   59 (62)
T 1jnm_A           26 RLEEKVKTLKAQNSELASTANMLREQVAQLKQKV   59 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555666666666666666666666665544

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=87.80  E-value=1.4  Score=25.40  Aligned_cols=34  Identities=18%  Similarity=0.323  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736         16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF   49 (85)
Q Consensus        16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~   49 (85)
                      ..+.....|+.+......+|..|+.++..+.++|
T Consensus        27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l   60 (63)
T 2wt7_A           27 TLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555666666666667777777777766654

>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1

Probab=87.72  E-value=2.1  Score=22.95  Aligned_cols=26  Identities=15%  Similarity=0.385  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736         21 IRELEEKVKVQNEEIVQLRSHLDKFQ   46 (85)
Q Consensus        21 I~~Le~~l~ekd~eI~eL~~~ldK~r   46 (85)
                      =..|-+.|..||++|+.|+++=+.++
T Consensus         9 NekLhk~ie~KdeeIa~Lk~eN~eL~   34 (37)
T 1t6f_A            9 NEKLHKEIEQKDNEIARLKKENKELA   34 (37)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            45678888999999999988766554

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=87.66  E-value=1.5  Score=25.01  Aligned_cols=34  Identities=18%  Similarity=0.302  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736         16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF   49 (85)
Q Consensus        16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~   49 (85)
                      ..+.....|+.+..+...+|..|+.++..+++.|
T Consensus        26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l   59 (61)
T 1t2k_D           26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444555666666666666667777666666543

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=87.01  E-value=1.6  Score=26.65  Aligned_cols=35  Identities=20%  Similarity=0.363  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCC
Q psy14736         16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFP   50 (85)
Q Consensus        16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~   50 (85)
                      .......+|+.+......+|..|..+++.|++.|-
T Consensus        40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~   74 (78)
T 1gu4_A           40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566888999999999999999999999998874

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=86.69  E-value=3.3  Score=25.12  Aligned_cols=44  Identities=14%  Similarity=0.088  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCC
Q psy14736          8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPY   51 (85)
Q Consensus         8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~   51 (85)
                      .+|..-|-..+..|++|...+.+...+|..|+.+|.-+..-+..
T Consensus        17 ~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~   60 (78)
T 3efg_A           17 VELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK   60 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666677888888999999999999999988888777765543

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=85.70  E-value=3.4  Score=23.41  Aligned_cols=39  Identities=15%  Similarity=0.396  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736          8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ   46 (85)
Q Consensus         8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r   46 (85)
                      ++|+..+.....+=..|..-|.+--.+|..|+.+||++-
T Consensus        12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La   50 (51)
T 3m91_A           12 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG   50 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            567777777777778888999999999999999999874

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=85.31  E-value=2.2  Score=24.82  Aligned_cols=35  Identities=17%  Similarity=0.336  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736         15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF   49 (85)
Q Consensus        15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~   49 (85)
                      +.+...+.+|+.++.....+...|..+++.++.-+
T Consensus        26 ~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l   60 (63)
T 2dgc_A           26 ARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36677889999999999999999999998888755

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=85.28  E-value=1.5  Score=27.41  Aligned_cols=35  Identities=20%  Similarity=0.363  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCC
Q psy14736         16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFP   50 (85)
Q Consensus        16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~   50 (85)
                      .......+|+.+......+|.+|..+++.+++.|-
T Consensus        40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~   74 (87)
T 1hjb_A           40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK   74 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556888999999999999999999999999884

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=84.08  E-value=3.2  Score=23.45  Aligned_cols=34  Identities=21%  Similarity=0.396  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736         16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF   49 (85)
Q Consensus        16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~   49 (85)
                      .+...+.+||.++.....+...|..++..++.-+
T Consensus        19 RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~   52 (55)
T 1dh3_A           19 KKKEYVKSLENRVAVLENQNKTLIEELKALKDLY   52 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5667799999999999999999999999988755

>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}

Probab=84.07  E-value=3.9  Score=24.94  Aligned_cols=33  Identities=30%  Similarity=0.479  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14736          9 EMQSILQAKESKIRELEEKVKVQNEEIVQLRSH   41 (85)
Q Consensus         9 ~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~   41 (85)
                      -|+..|..+|..|+.|+..+.-+......|..+
T Consensus        22 ~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDE   54 (75)
T 3a7o_A           22 ILQKELKSKEQEIRRLKEVIALKNKNTERLNDE   54 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHH
Confidence            344444555555555555554444444444433

>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}

Probab=83.98  E-value=1.4  Score=26.83  Aligned_cols=28  Identities=25%  Similarity=0.451  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736         22 RELEEKVKVQNEEIVQLRSHLDKFQSVF   49 (85)
Q Consensus        22 ~~Le~~l~ekd~eI~eL~~~ldK~rsv~   49 (85)
                      .+|...|+++++||..|..-+-.||+-+
T Consensus         6 KeL~~kl~~Kq~EI~rLnvlvgslR~KL   33 (74)
T 2q6q_A            6 KELNFKLREKQNEIFELKKIAETLRSKL   33 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566677777777777776666666654

>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}

Probab=83.95  E-value=3.9  Score=25.83  Aligned_cols=22  Identities=14%  Similarity=0.315  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHhHhhhhccC
Q psy14736         28 VKVQNEEIVQLRSHLDKFQSVF   49 (85)
Q Consensus        28 l~ekd~eI~eL~~~ldK~rsv~   49 (85)
                      |.+-...|..|+.++.||++.+
T Consensus        64 L~e~~~kid~L~~el~K~q~~L   85 (98)
T 2ke4_A           64 IAETLSNIERLKLEVQKYEAWL   85 (98)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556777777777777765

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=82.97  E-value=3  Score=23.62  Aligned_cols=26  Identities=27%  Similarity=0.473  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736         20 KIRELEEKVKVQNEEIVQLRSHLDKF   45 (85)
Q Consensus        20 ~I~~Le~~l~ekd~eI~eL~~~ldK~   45 (85)
                      ...+|..++.+..+++.+|++.|.+|
T Consensus        27 E~~eLk~k~~~L~~~~~el~~~l~~~   52 (53)
T 2yy0_A           27 ELAEMKEKYEAIVEENKKLKAKLAQY   52 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            45566666666666777777666554

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=80.97  E-value=5.4  Score=27.34  Aligned_cols=39  Identities=28%  Similarity=0.356  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736          8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ   46 (85)
Q Consensus         8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r   46 (85)
                      ..|+..+...+..|..|+.++.+|+..+..|+.++.-++
T Consensus        71 ~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLq  109 (152)
T 3a7p_A           71 AILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGT  109 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777778888888888888888888888887776655

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=80.68  E-value=4.6  Score=23.30  Aligned_cols=31  Identities=19%  Similarity=0.311  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736         18 ESKIRELEEKVKVQNEEIVQLRSHLDKFQSV   48 (85)
Q Consensus        18 d~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv   48 (85)
                      ......|+.+.++...+|..|+.|+.-+++.
T Consensus        29 e~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l   59 (63)
T 1ci6_A           29 TGECKELEKKNEALKERADSLAKEIQYLKDL   59 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555566666555555443

>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*

Probab=80.52  E-value=4.4  Score=30.49  Aligned_cols=42  Identities=19%  Similarity=0.319  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736          8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF   49 (85)
Q Consensus         8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~   49 (85)
                      ..|...|...++.|..|+..+...+..|.+|+.+|..+.+.+
T Consensus        15 ~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~   56 (323)
T 1lwu_C           15 RILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC   56 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566667788899999999999999999998888777644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	85
d1ykha1	95	RNA polymerase II mediator complex protein MED7 {B	92.66
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	81.14

>d1ykha1 a.252.1.2 (A:111-205) RNA polymerase II mediator complex protein MED7 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Mediator hinge subcomplex-like
superfamily: Mediator hinge subcomplex-like
family: MED7 hinge region
domain: RNA polymerase II mediator complex protein MED7
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.66  E-value=0.084  Score=32.23  Aligned_cols=35  Identities=26%  Similarity=0.350  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736         15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF   49 (85)
Q Consensus        15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~   49 (85)
                      |++++.|--|+.+++++.+++.+++..+|+++.++
T Consensus        59 QAResLi~lme~Ql~~kr~~~~~i~~~~~~~~~~L   93 (95)
T d1ykha1          59 QSRESLIMLLEEQLEYKRGEIREIEQVCKQVHDKL   93 (95)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            79999999999999999999999999999998865

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=81.14  E-value=2.6  Score=25.18  Aligned_cols=43  Identities=12%  Similarity=0.251  Sum_probs=36.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736          6 TVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSV   48 (85)
Q Consensus         6 ~~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv   48 (85)
                      ++.+|...++.....|..|+.++...+..+.++..-++.+.+.
T Consensus         2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l   44 (133)
T d1fxkc_           2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDI   44 (133)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3588888888888999999999999999888888777777664