Psyllid ID: psy14757

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90
Protein Sequence
PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEVSRDTFPLCDFYRATPSRGKNRVGGNPP
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEEEEEEcccEEEEEEEcccccccHHHHHHHHHHccccccEEEEcccccccEEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEEEEEEccccEEEEEEcccccHccHHHHHHHHHHHHccccEEEcccccccccccEEEccccccccccccccc
Coil and Loop (DISEMBL)
pfadafkgseddvQDGLVHIRIQqrngrktlttvqglssEYDLKKIVRACKKEfacngtvievsrdtfplcdfyratpsrgknrvggnpp
Flexible Loop (DISEMBL)
pfadafkgseddvqdglvhiriqqrngrktlttvqglsseydLKKIVRACKKEFacngtvievsrdtfplcdfyratpsrgknrvggnpp
Low Complexity Region (SEG)
PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEVSRDTFPLCDFYRATPSRGKNRVGGNPP
Disordered region (IsUnstruct)
***************GLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEVSRDTFPLCDFYRA**************
Disordered Region (DISOPRED)
PFADA**G***DVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEVSRDTFPLCDFYR***************
Disordered Region (DISEMBL)
************VQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEVSRDTFPLCDFYRATPS***********
Disordered Region (DISPRO)
*************QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEVSRDTFPLCDFYRATP************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEVSRDTFPLCDFYRATPSRGKNRVGGNPP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	90	2.2.26 [Sep-21-2011]
Q9VZS3	110	Protein translation facto	yes	N/A	0.688	0.563	0.903	1e-27
P42678	110	Protein translation facto	yes	N/A	0.688	0.563	0.919	4e-27
P32911	108	Eukaryotic translation in	yes	N/A	0.666	0.555	0.580	5e-15
P79060	109	Protein translation facto	yes	N/A	0.666	0.550	0.629	6e-15
Q755R1	108	Protein translation facto	yes	N/A	0.666	0.555	0.548	6e-14
Q94JV4	113	Protein translation facto	yes	N/A	0.722	0.575	0.569	3e-13
P41568	113	Protein translation facto	yes	N/A	0.722	0.575	0.569	3e-13
Q9SQF4	113	Protein translation facto	N/A	N/A	0.722	0.575	0.569	3e-13
Q0D5W6	115	Protein translation facto	no	N/A	0.688	0.539	0.546	3e-12
A6MZM2	115	Protein translation facto	N/A	N/A	0.688	0.539	0.546	3e-12

>sp|Q9VZS3|SUI1_DROME Protein translation factor SUI1 homolog OS=Drosophila melanogaster GN=CG17737 PE=1 SV=1

 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/62 (90%), Positives = 61/62 (98%)

Query: 1  PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
          PFADA KG++DD+QDGLVHIRIQQRNGRKTLTTVQGLS+EYDLKKIVR+CKKEFACNGTV
Sbjct: 11 PFADAIKGNDDDIQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRSCKKEFACNGTV 70

Query: 61 IE 62
          IE
Sbjct: 71 IE 72

Probably involved in translation.
Drosophila melanogaster (taxid: 7227)

>sp|P42678|SUI1_ANOGA Protein translation factor SUI1 homolog OS=Anopheles gambiae GN=AGAP006459 PE=3 SV=1

 Score =  120 bits (300), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 57/62 (91%), Positives = 60/62 (96%)

Query: 1  PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
          PFADA KG++ DVQDGLVHIRIQQRNGRKTLTTVQGLS+EYDLKKIVRACKKEFACNGTV
Sbjct: 11 PFADAIKGADYDVQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRACKKEFACNGTV 70

Query: 61 IE 62
          IE
Sbjct: 71 IE 72

Probably involved in translation.

Anopheles gambiae (taxid: 7165)

>sp|P32911|SUI1_YEAST Eukaryotic translation initiation factor eIF-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SUI1 PE=1 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 47/62 (75%), Gaps = 2/62 (3%)

Query: 1  PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
          PFAD   G ++      +HIRIQQRNGRKTLTTVQG+  EYDLK+I++  KK+FACNG +
Sbjct: 11 PFADT--GDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNI 68

Query: 61 IE 62
          ++
Sbjct: 69 VK 70

Additional factor that functions in concert with eIF-2 and the initiator tRNA in directing the ribosome to the proper start site of translation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P79060|SUI1_SCHPO Protein translation factor sui1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sui1 PE=3 SV=3

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 39/62 (62%), Positives = 48/62 (77%), Gaps = 2/62 (3%)

Query: 1  PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
          PFAD   G +D      +HIRIQQRNGRKTLTTVQGL  E+D K+I+RA KK+FACNGT+
Sbjct: 12 PFADT--GDDDAQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRALKKDFACNGTI 69

Query: 61 IE 62
          ++
Sbjct: 70 VK 71

Additional factor that functions in concert with eIF-2 and the initiator tRNA in directing the ribosome to the proper start site of translation.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q755R1|SUI1_ASHGO Protein translation factor SUI1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SUI1A PE=3 SV=1

 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 46/62 (74%), Gaps = 2/62 (3%)

Query: 1  PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
          PFAD   G ++      +HIRIQQRNGRKTLTTVQG+  EYDLK+I++  +K+F CNG +
Sbjct: 11 PFADT--GDDEASSSNYIHIRIQQRNGRKTLTTVQGIPEEYDLKRILKVLRKDFGCNGNM 68

Query: 61 IE 62
          ++
Sbjct: 69 VK 70

Additional factor that functions in concert with eIF-2 and the initiator tRNA in directing the ribosome to the proper start site of translation.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q94JV4|SUI12_ARATH Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 PE=3 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 43/65 (66%)

Query: 1  PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
          PFADA            VHIR+QQRNGRK+LTTVQGL  EY   KI++  KKEF CNGTV
Sbjct: 14 PFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEFCCNGTV 73

Query: 61 IEVSR 65
          ++ S 
Sbjct: 74 VQDSE 78

Probably involved in translation.

Arabidopsis thaliana (taxid: 3702)

>sp|P41568|SUI11_ARATH Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 PE=3 SV=2

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 43/65 (66%)

Query: 1  PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
          PFADA            VHIR+QQRNGRK+LTTVQGL  EY   KI++  KKEF CNGTV
Sbjct: 14 PFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTV 73

Query: 61 IEVSR 65
          ++ S 
Sbjct: 74 VQDSE 78

Probably involved in translation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SQF4|SUI1_BRAOL Protein translation factor SUI1 homolog OS=Brassica oleracea PE=3 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 43/65 (66%)

Query: 1  PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
          PFADA            VHIR+QQRNGRK+LTTVQGL  EY   KI++  KKEF CNGTV
Sbjct: 14 PFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTV 73

Query: 61 IEVSR 65
          ++ S 
Sbjct: 74 VQDSE 78

Probably involved in translation.

Brassica oleracea (taxid: 3712)

>sp|Q0D5W6|SUI1_ORYSJ Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 1  PFADAFKGSEDDVQDG--LVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNG 58
          PFA+A  G           VH+RIQQRNGRK+LTTVQGL  E+   KI++  KKEF CNG
Sbjct: 14 PFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNG 73

Query: 59 TVIE 62
          TV++
Sbjct: 74 TVVQ 77

Probably involved in translation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A6MZM2|SUI1_ORYSI Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica GN=GOS2 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 1  PFADAFKGSEDDVQDG--LVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNG 58
          PFA+A  G           VH+RIQQRNGRK+LTTVQGL  E+   KI++  KKEF CNG
Sbjct: 14 PFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNG 73

Query: 59 TVIE 62
          TV++
Sbjct: 74 TVVQ 77

Probably involved in translation.

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
380028007	861	PREDICTED: uncharacterized protein LOC10	0.688	0.072	0.967	6e-28
350401769	110	PREDICTED: protein translation factor SU	0.688	0.563	0.967	3e-27
149898906	110	translation initiation factor 1 [Triatom	0.688	0.563	0.967	4e-27
328781153	763	PREDICTED: la-related protein 4-like [Ap	0.688	0.081	0.967	8e-27
307179421	836	La-related protein 4 [Camponotus florida	0.688	0.074	0.967	8e-27
242023184	110	translation factor sui1, putative [Pedic	0.688	0.563	0.951	8e-27
383858676	765	PREDICTED: la-related protein 4-like [Me	0.688	0.081	0.967	9e-27
345495153	775	PREDICTED: hypothetical protein LOC10012	0.688	0.08	0.967	1e-26
112983000	110	protein translation factor SUI1 homolog	0.688	0.563	0.935	1e-26
193620426	110	PREDICTED: protein translation factor SU	0.688	0.563	0.935	1e-26

>gi|380028007|ref|XP_003697703.1| PREDICTED: uncharacterized protein LOC100872910 [Apis florea]

 Score =  128 bits (321), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 60/62 (96%), Positives = 61/62 (98%)

Query: 1  PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
          PFADA KGS+DDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV
Sbjct: 11 PFADAIKGSDDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 70

Query: 61 IE 62
          IE
Sbjct: 71 IE 72

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401769|ref|XP_003486256.1| PREDICTED: protein translation factor SUI1 homolog [Bombus impatiens] gi|307207800|gb|EFN85418.1| Protein translation factor SUI1-like protein [Harpegnathos saltator] gi|332024011|gb|EGI64229.1| Protein translation factor SUI1-like protein [Acromyrmex echinatior]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/62 (96%), Positives = 61/62 (98%)

Query: 1  PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
          PFADA KGS+DDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV
Sbjct: 11 PFADAIKGSDDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 70

Query: 61 IE 62
          IE
Sbjct: 71 IE 72

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|149898906|gb|ABR27954.1| translation initiation factor 1 [Triatoma infestans]

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/62 (96%), Positives = 61/62 (98%)

Query: 1  PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
          PFADA KGS+DDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV
Sbjct: 11 PFADAIKGSDDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 70

Query: 61 IE 62
          IE
Sbjct: 71 IE 72

Source: Triatoma infestans

Species: Triatoma infestans

Genus: Triatoma

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328781153|ref|XP_394951.3| PREDICTED: la-related protein 4-like [Apis mellifera]

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 60/62 (96%), Positives = 61/62 (98%)

Query: 1  PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
          PFADA KGS+DDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV
Sbjct: 11 PFADAIKGSDDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 70

Query: 61 IE 62
          IE
Sbjct: 71 IE 72

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307179421|gb|EFN67745.1| La-related protein 4 [Camponotus floridanus]

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 60/62 (96%), Positives = 61/62 (98%)

Query: 1  PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
          PFADA KGS+DDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV
Sbjct: 11 PFADAIKGSDDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 70

Query: 61 IE 62
          IE
Sbjct: 71 IE 72

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023184|ref|XP_002432016.1| translation factor sui1, putative [Pediculus humanus corporis] gi|212517367|gb|EEB19278.1| translation factor sui1, putative [Pediculus humanus corporis]

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 59/62 (95%), Positives = 61/62 (98%)

Query: 1  PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
          PFADA KG++DDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV
Sbjct: 11 PFADAIKGADDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 70

Query: 61 IE 62
          IE
Sbjct: 71 IE 72

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858676|ref|XP_003704825.1| PREDICTED: la-related protein 4-like [Megachile rotundata]

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 60/62 (96%), Positives = 61/62 (98%)

Query: 1  PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
          PFADA KGS+DDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV
Sbjct: 11 PFADAIKGSDDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 70

Query: 61 IE 62
          IE
Sbjct: 71 IE 72

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495153|ref|XP_001603906.2| PREDICTED: hypothetical protein LOC100120245 [Nasonia vitripennis]

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 60/62 (96%), Positives = 61/62 (98%)

Query: 1  PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
          PFADA KGS+DDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV
Sbjct: 11 PFADAIKGSDDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 70

Query: 61 IE 62
          IE
Sbjct: 71 IE 72

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|112983000|ref|NP_001037082.1| protein translation factor SUI1 homolog [Bombyx mori] gi|37886145|gb|AAR04678.1| Sui1 [Bombyx mori] gi|357623689|gb|EHJ74739.1| protein translation factor SUI1-like protein [Danaus plexippus] gi|389608359|dbj|BAM17789.1| similar to CG17737 [Papilio xuthus] gi|389610721|dbj|BAM18972.1| simila to CG17737 [Papilio polytes]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/62 (93%), Positives = 60/62 (96%)

Query: 1  PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
          PFADA K SEDDVQDGLVH+RIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV
Sbjct: 11 PFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 70

Query: 61 IE 62
          +E
Sbjct: 71 VE 72

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193620426|ref|XP_001948896.1| PREDICTED: protein translation factor SUI1 homolog [Acyrthosiphon pisum]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/62 (93%), Positives = 61/62 (98%)

Query: 1  PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
          PFADA KG++DDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV
Sbjct: 11 PFADAIKGADDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 70

Query: 61 IE 62
          +E
Sbjct: 71 VE 72

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
FB|FBgn0035423	110	CG17737 [Drosophila melanogast	0.688	0.563	0.903	9.4e-27
ZFIN|ZDB-GENE-030131-956	113	eif1b "eukaryotic translation	0.677	0.539	0.676	1.6e-17
UNIPROTKB|F1NIG7	116	EIF1B "Uncharacterized protein	0.666	0.517	0.666	2e-17
UNIPROTKB|F1P047	113	EIF1 "Eukaryotic translation i	0.666	0.530	0.666	2e-17
UNIPROTKB|Q32LJ9	113	EIF1B "Eukaryotic translation	0.666	0.530	0.666	2e-17
UNIPROTKB|Q5E938	113	EIF1 "Eukaryotic translation i	0.666	0.530	0.666	2e-17
UNIPROTKB|J9PA62	113	EIF1 "Uncharacterized protein"	0.666	0.530	0.666	2e-17
UNIPROTKB|K7EM18	121	EIF1 "Eukaryotic translation i	0.666	0.495	0.666	2e-17
UNIPROTKB|O60739	113	EIF1B "Eukaryotic translation	0.666	0.530	0.666	2e-17
UNIPROTKB|P41567	113	EIF1 "Eukaryotic translation i	0.666	0.530	0.666	2e-17

FB|FBgn0035423 CG17737 [Drosophila melanogaster (taxid:7227)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 56/62 (90%), Positives = 61/62 (98%)

Query:     1 PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
             PFADA KG++DD+QDGLVHIRIQQRNGRKTLTTVQGLS+EYDLKKIVR+CKKEFACNGTV
Sbjct:    11 PFADAIKGNDDDIQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRSCKKEFACNGTV 70

Query:    61 IE 62
             IE
Sbjct:    71 IE 72

GO:0006412 "translation" evidence=NAS

GO:0006413 "translational initiation" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0071456 "cellular response to hypoxia" evidence=IMP

ZFIN|ZDB-GENE-030131-956 eif1b "eukaryotic translation initiation factor 1B" [Danio rerio (taxid:7955)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 44/65 (67%), Positives = 53/65 (81%)

Query:     1 PFADAFKGSEDDVQDGL---VHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACN 57
             PFADA KG +D +  G    +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+FACN
Sbjct:    12 PFADATKG-DDRLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN 70

Query:    58 GTVIE 62
             GTVIE
Sbjct:    71 GTVIE 75

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

UNIPROTKB|F1NIG7 EIF1B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 44/66 (66%), Positives = 53/66 (80%)

Query:     1 PFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 56
             PFADA KG  DD+     +  +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+FAC
Sbjct:    15 PFADATKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 72

Query:    57 NGTVIE 62
             NGTVIE
Sbjct:    73 NGTVIE 78

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|F1P047 EIF1 "Eukaryotic translation initiation factor 1" [Gallus gallus (taxid:9031)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 44/66 (66%), Positives = 53/66 (80%)

Query:     1 PFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 56
             PFADA KG  DD+     +  +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+FAC
Sbjct:    12 PFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 69

Query:    57 NGTVIE 62
             NGTVIE
Sbjct:    70 NGTVIE 75

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|Q32LJ9 EIF1B "Eukaryotic translation initiation factor 1B" [Bos taurus (taxid:9913)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 44/66 (66%), Positives = 53/66 (80%)

Query:     1 PFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 56
             PFADA KG  DD+     +  +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+FAC
Sbjct:    12 PFADATKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 69

Query:    57 NGTVIE 62
             NGTVIE
Sbjct:    70 NGTVIE 75

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|Q5E938 EIF1 "Eukaryotic translation initiation factor 1" [Bos taurus (taxid:9913)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 44/66 (66%), Positives = 53/66 (80%)

Query:     1 PFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 56
             PFADA KG  DD+     +  +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+FAC
Sbjct:    12 PFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 69

Query:    57 NGTVIE 62
             NGTVIE
Sbjct:    70 NGTVIE 75

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|J9PA62 EIF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 44/66 (66%), Positives = 53/66 (80%)

Query:     1 PFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 56
             PFADA KG  DD+     +  +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+FAC
Sbjct:    12 PFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 69

Query:    57 NGTVIE 62
             NGTVIE
Sbjct:    70 NGTVIE 75

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|K7EM18 EIF1 "Eukaryotic translation initiation factor 1" [Homo sapiens (taxid:9606)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 44/66 (66%), Positives = 53/66 (80%)

Query:     1 PFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 56
             PFADA KG  DD+     +  +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+FAC
Sbjct:    12 PFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 69

Query:    57 NGTVIE 62
             NGTVIE
Sbjct:    70 NGTVIE 75

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|O60739 EIF1B "Eukaryotic translation initiation factor 1b" [Homo sapiens (taxid:9606)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 44/66 (66%), Positives = 53/66 (80%)

Query:     1 PFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 56
             PFADA KG  DD+     +  +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+FAC
Sbjct:    12 PFADATKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 69

Query:    57 NGTVIE 62
             NGTVIE
Sbjct:    70 NGTVIE 75

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006446 "regulation of translational initiation" evidence=NAS

UNIPROTKB|P41567 EIF1 "Eukaryotic translation initiation factor 1" [Homo sapiens (taxid:9606)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 44/66 (66%), Positives = 53/66 (80%)

Query:     1 PFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 56
             PFADA KG  DD+     +  +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+FAC
Sbjct:    12 PFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 69

Query:    57 NGTVIE 62
             NGTVIE
Sbjct:    70 NGTVIE 75

GO:0003743 "translation initiation factor activity" evidence=NAS

GO:0006413 "translational initiation" evidence=NAS

GO:0006950 "response to stress" evidence=NAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0006446 "regulation of translational initiation" evidence=TAS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P42678	SUI1_ANOGA	No assigned EC number	0.9193	0.6888	0.5636	yes	N/A
Q9VZS3	SUI1_DROME	No assigned EC number	0.9032	0.6888	0.5636	yes	N/A
P41568	SUI11_ARATH	No assigned EC number	0.5692	0.7222	0.5752	yes	N/A
P79060	SUI1_SCHPO	No assigned EC number	0.6290	0.6666	0.5504	yes	N/A
P32911	SUI1_YEAST	No assigned EC number	0.5806	0.6666	0.5555	yes	N/A
O60739	EIF1B_HUMAN	No assigned EC number	0.6666	0.6666	0.5309	yes	N/A
P61220	EIF1B_PIG	No assigned EC number	0.6666	0.6666	0.5309	yes	N/A
Q94JV4	SUI12_ARATH	No assigned EC number	0.5692	0.7222	0.5752	yes	N/A
Q755R1	SUI1_ASHGO	No assigned EC number	0.5483	0.6666	0.5555	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	90
cd11566	84	cd11566, eIF1_SUI1, Eukaryotic initiation factor 1	2e-30
TIGR01160	110	TIGR01160, SUI1_MOF2, translation initiation facto	6e-29
pfam01253	74	pfam01253, SUI1, Translation initiation factor SUI	2e-16
COG0023	104	COG0023, SUI1, Translation initiation factor 1 (eI	7e-15
cd00474	78	cd00474, eIF1_SUI1_like, Eukaryotic initiation fac	1e-11
cd11607	86	cd11607, DENR_C, C-terminal domain of DENR and rel	9e-07
TIGR01158	101	TIGR01158, SUI1_rel, translation initation factor	2e-05
cd11608	85	cd11608, eIF2D_C, C-terminal domain of eIF2D and r	9e-05
PRK00939	99	PRK00939, PRK00939, translation initiation factor	1e-04
cd11567	76	cd11567, YciH_like, Homologs of eIF1/SUI1 includin	7e-04

>gnl|CDD|211318 cd11566, eIF1_SUI1, Eukaryotic initiation factor 1

 Score =  102 bits (256), Expect = 2e-30
 Identities = 38/47 (80%), Positives = 43/47 (91%)

Query: 16 GLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIE 62
          G +HIRIQQRNGRKTLTTVQGL  E+DLKKI++A KKEFACNGTV+E
Sbjct: 1  GYIHIRIQQRNGRKTLTTVQGLPEEFDLKKILKAFKKEFACNGTVVE 47

eIF1/SUI1 (eukaryotic initiation factor 1) plays an important role in accurate initiator codon recognition during translation initiation. eIF1 interacts with 18S rRNA in the 40S ribosomal subunit during eukaryotic translation initiation. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown. Length = 84

>gnl|CDD|130228 TIGR01160, SUI1_MOF2, translation initiation factor SUI1, eukaryotic

 Score = 99.5 bits (248), Expect = 6e-29
 Identities = 48/65 (73%), Positives = 51/65 (78%), Gaps = 5/65 (7%)

Query: 1  PFADAFKGSEDDVQDG---LVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACN 57
          PFADA  G +D    G    +HIRIQQRNGRKTLTTVQGL  EYDLKKIV+A KKEFACN
Sbjct: 10 PFADA--GDDDSALPGTSNYIHIRIQQRNGRKTLTTVQGLPKEYDLKKIVKALKKEFACN 67

Query: 58 GTVIE 62
          GTVIE
Sbjct: 68 GTVIE 72

Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation [Protein synthesis, Translation factors]. Length = 110

>gnl|CDD|216391 pfam01253, SUI1, Translation initiation factor SUI1

 Score = 66.8 bits (164), Expect = 2e-16
 Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 14 QDGLVHIRIQQRNGRKTLTTVQGL-SSEYDLKKIVRACKKEFACNGTV 60
          +D  + IR ++R G KT+T V GL     DLKK+ +  KK+F C GTV
Sbjct: 3  EDQKIRIRREKRRGGKTVTVVTGLELFGIDLKKLAKELKKKFGCGGTV 50

Length = 74

>gnl|CDD|223102 COG0023, SUI1, Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]

 Score = 63.5 bits (155), Expect = 7e-15
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 14 QDGLVHIRIQQRNGRKTLTTVQGL-SSEYDLKKIVRACKKEFACNGTV 60
           D +V IR + R   KT+T ++GL   + DLKK+ +  KK+ AC GTV
Sbjct: 25 GDQIVRIRRETRRKGKTVTIIEGLDLKDIDLKKLAKELKKKCACGGTV 72

Length = 104

>gnl|CDD|211317 cd00474, eIF1_SUI1_like, Eukaryotic initiation factor 1 and related proteins

 Score = 54.7 bits (132), Expect = 1e-11
 Identities = 18/45 (40%), Positives = 30/45 (66%)

Query: 18 VHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIE 62
          +HI+++QR+G K +T V+GL +  DL+K+    KK+  C G+V  
Sbjct: 2  IHIKVEQRSGGKKVTKVEGLPAYIDLRKLADELKKKLGCGGSVEG 46

Members of the eIF1/SUI1 (eukaryotic initiation factor 1) family are found in eukaryotes, archaea, and some bacteria; eukaryotic members are understood to play an important role in accurate initiator codon recognition during translation initiation. eIF1 interacts with 18S rRNA in the 40S ribosomal subunit during eukaryotic translation initiation. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown. The function of non-eukaryotic family members is also unclear. Length = 78

>gnl|CDD|211320 cd11607, DENR_C, C-terminal domain of DENR and related proteins

 Score = 42.2 bits (100), Expect = 9e-07
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 18 VHIRIQQRNGRKTLTTVQGLSSEY-DLKKIVRACKKEFACNGTVIE 62
          V I+   RN RK +TTV GL +   DLKK  +   K+FAC  +V +
Sbjct: 3  VTIKRISRNKRKFVTTVTGLETFGIDLKKAAKLFAKKFACGASVTK 48

DENR (density regulated protein), together with MCT-1 (multiple copies T cell malignancies), has been shown to have similar function as eIF2D translation initiation factor (also known as ligatin), which is involved in the recruitment and delivery of aminoacyl-tRNAs to the P-site of the eukaryotic ribosome in a GTP-independent manner. Length = 86

>gnl|CDD|130226 TIGR01158, SUI1_rel, translation initation factor SUI1, putative, prokaryotic

 Score = 39.6 bits (93), Expect = 2e-05
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 10 EDDVQDGLVHIRIQQRNGR--KTLTTVQGLS-SEYDLKKIVRACKKEFACNGTV 60
              +D +V I+ + R GR  K +T ++GL  S+ DLK++ +  K +  C GTV
Sbjct: 18 AKPKEDQVVRIQRETR-GRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTV 70

This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met [Protein synthesis, Translation factors]. Length = 101

>gnl|CDD|211321 cd11608, eIF2D_C, C-terminal domain of eIF2D and related proteins

 Score = 37.2 bits (87), Expect = 9e-05
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 18 VHIRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEVS 64
          + I  ++R G K +T + GL S   D ++  +  +K+ A + +V  + 
Sbjct: 2  IDITTERRQGNKKVTLISGLESFGIDPEEFAKELQKKCAASTSVSPLP 49

eIF2D translation initiation factor (also known as ligatin) is involved in the recruitment and delivery of aminoacyl-tRNAs to the P-site of the eukaryotic ribosome in a GTP-independent manner. Length = 85

>gnl|CDD|179173 PRK00939, PRK00939, translation initiation factor Sui1; Reviewed

 Score = 36.8 bits (86), Expect = 1e-04
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 18 VHIRIQQRNGRKTLTTVQGLS-SEYDLKKIVRACKKEFACNGTV 60
          + I++ +R   K +T ++G+   + DLK++ +  K + AC GTV
Sbjct: 26 IKIKVDKRRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTV 69

Length = 99

>gnl|CDD|211319 cd11567, YciH_like, Homologs of eIF1/SUI1 including Escherichia coli YciH

 Score = 34.4 bits (80), Expect = 7e-04
 Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 16 GLVHIRIQQR-NGRKTLTTVQGLS-SEYDLKKIVRACKKEFACNGTVIE 62
            V +R+++R  G KT+T ++GL  SE DLK++ +  KK+  C GTV +
Sbjct: 1  QKVRVRLEKRGRGGKTVTVIEGLPLSEEDLKELAKELKKKCGCGGTVKD 49

Members of the eIF1/SUI1 (eukaryotic initiation factor 1) family are found in eukaryotes, archaea, and some bacteria; eukaryotic members are understood to play an important role in accurate initiator codon recognition during translation initiation. The function of non-eukaryotic family members is unclear. Escherichia coli YciH is a non-essential protein and was reported to be able to perform some of the functions of IF3 in prokaryotic initiation. Length = 76

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	90
KOG1770|consensus	112		99.97
TIGR01160	110	SUI1_MOF2 translation initiation factor SUI1, euka	99.92
COG0023	104	SUI1 Translation initiation factor 1 (eIF-1/SUI1)	99.8
cd00474	77	SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation fac	99.73
PF01253	83	SUI1: Translation initiation factor SUI1; InterPro	99.67
PRK06824	118	translation initiation factor Sui1; Validated	99.65
PRK00939	99	translation initiation factor Sui1; Reviewed	99.64
PRK07451	115	translation initiation factor Sui1; Validated	99.62
TIGR01159	173	DRP1 density-regulated protein DRP1. This protein	99.61
PRK09019	108	translation initiation factor Sui1; Validated	99.6
TIGR01158	101	SUI1_rel translation initation factor SUI1, putati	99.6
KOG3239|consensus	193		99.22
KOG2522|consensus	560		96.08

>KOG1770|consensus

Probab=99.97  E-value=1e-30  Score=182.09  Aligned_cols=77  Identities=57%  Similarity=0.857  Sum_probs=68.4

Q ss_pred             CCcccCCC-CCCCCCcCeEEEEEEeeeCCeeEEEEecCCCCcchHHHHHHHhhhhccccEEEecCCCC----------cc
Q psy14757          1 PFADAFKG-SEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEVSRDT----------FP   69 (90)
Q Consensus         1 pfa~~~~~-d~~~~~~~~IhIRiqqRngrK~vTtVeGL~~~~dlKki~K~lKkkfaCgGtV~e~~e~~----------~~   69 (90)
                      |||++.++ ++.+++.++||||||||||||++||||||+.+||+|+|+++|||+|||||||++|+|+|          .+
T Consensus        12 pfad~~~~~~~~~g~~~~ihIRIQQRnGrKtlTtVQgi~~Eyd~kril~~lKKef~CnGtvved~e~gevIQLqGDqR~n   91 (112)
T KOG1770|consen   12 PFADARAGEDDIAGTEKYIHIRIQQRNGRKTLTTVQGIPMEYDLKKILKSLKKEFACNGTVVEDPEYGEVIQLQGDQRKN   91 (112)
T ss_pred             cccccccccccccCccceEEEEEEeeCCceEEEEecCChhhhhHHHHHHHHHHhccCCCeEecCcccCceEEeccchhhh
Confidence            89999887 33577788999999999999999999999999999999999999999999999999866          46


Q ss_pred             hhhhhhcc
Q psy14757         70 LCDFYRAT   77 (90)
Q Consensus        70 I~~~lr~~   77 (90)
                      +|+||...
T Consensus        92 v~~fl~~~   99 (112)
T KOG1770|consen   92 VCQFLVQV   99 (112)
T ss_pred             HHHHHHHh
Confidence            67777543

>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic

Probab=99.92  E-value=2.1e-25  Score=154.78  Aligned_cols=77  Identities=61%  Similarity=0.848  Sum_probs=65.1

Q ss_pred             CCcccCCCCCCC-CCcCeEEEEEEeeeCCeeEEEEecCCCCcchHHHHHHHhhhhccccEEEecCCCC----------cc
Q psy14757          1 PFADAFKGSEDD-VQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEVSRDT----------FP   69 (90)
Q Consensus         1 pfa~~~~~d~~~-~~~~~IhIRiqqRngrK~vTtVeGL~~~~dlKki~K~lKkkfaCgGtV~e~~e~~----------~~   69 (90)
                      ||+|++++++.. .++++||||++||+|||+||+|+||+.++||++|+|.||++|||||||+++++++          ++
T Consensus        10 pf~d~~~~~~~~~~~~~~I~Iri~qR~grK~VTiI~Gl~~~~dlk~l~K~lKkk~~cGGsVk~~~~~~~~IelQGD~re~   89 (110)
T TIGR01160        10 PFADAGDDDSALPGTSNYIHIRIQQRNGRKTLTTVQGLPKEYDLKKIVKALKKEFACNGTVIEDPEMGEVIQLQGDQRKN   89 (110)
T ss_pred             CccccccccccccCccceEEEEEEEccCCccEEEEeccCChHHHHHHHHHHHHHhCCCceEEeCCCCCCEEEEeCcHHHH
Confidence            899986655432 4688999999999999999999999999999999999999999999999986643          55


Q ss_pred             hhhhhhcc
Q psy14757         70 LCDFYRAT   77 (90)
Q Consensus        70 I~~~lr~~   77 (90)
                      |.+||.+.
T Consensus        90 v~~~L~~~   97 (110)
T TIGR01160        90 VCEFLISQ   97 (110)
T ss_pred             HHHHHHHc
Confidence            66666553

Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.

>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]

Probab=99.80  E-value=6.6e-20  Score=126.60  Aligned_cols=65  Identities=32%  Similarity=0.474  Sum_probs=60.0

Q ss_pred             CCC-cCeEEEEEEeeeCCeeEEEEecCCC-CcchHHHHHHHhhhhccccEEEecC-----CCCcchhhhhhc
Q psy14757         12 DVQ-DGLVHIRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEVS-----RDTFPLCDFYRA   76 (90)
Q Consensus        12 ~~~-~~~IhIRiqqRngrK~vTtVeGL~~-~~dlKki~K~lKkkfaCgGtV~e~~-----e~~~~I~~~lr~   76 (90)
                      +++ +++|+|++++|++||.||+|+||+. ++||++|+++||++|||||||+++.     +|.+.|.+||.+
T Consensus        22 ~k~~~~~V~I~~e~rr~gK~VTiI~Gld~~~~dlk~Lak~LKk~cacGGtvk~~~IeiQGdhr~~v~~~L~~   93 (104)
T COG0023          22 AKEGDQIVRIRRETRRKGKTVTIIEGLDLKDIDLKKLAKELKKKCACGGTVKDGEIEIQGDHRDKVKELLIK   93 (104)
T ss_pred             ccccCCeEEEEEEeecCCcEEEEEeCcccchhhHHHHHHHHHHHcCCCceecCCEEEEeChHHHHHHHHHHH
Confidence            445 8999999999999999999999997 8999999999999999999999872     588999999987

>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation

Probab=99.73  E-value=4.7e-18  Score=110.90  Aligned_cols=61  Identities=49%  Similarity=0.665  Sum_probs=54.2

Q ss_pred             eEEEEEEeeeCCeeEEEEecCCCC-cchHHHHHHHhhhhccccEEEec-----CCCCcchhhhhhcc
Q psy14757         17 LVHIRIQQRNGRKTLTTVQGLSSE-YDLKKIVRACKKEFACNGTVIEV-----SRDTFPLCDFYRAT   77 (90)
Q Consensus        17 ~IhIRiqqRngrK~vTtVeGL~~~-~dlKki~K~lKkkfaCgGtV~e~-----~e~~~~I~~~lr~~   77 (90)
                      .|||++++|++||+||+|+||+.. .|+++++|.||++|||||||++.     -++.+.+.+||.+.
T Consensus         1 ~V~I~~e~R~~~K~VT~I~Gl~~~~~dlk~l~k~lKk~~~cggtv~~~~I~lQGD~r~~v~~~L~~~   67 (77)
T cd00474           1 VVRIRIQQRNGGKTVTTVQGLDLEYADLKKLAKELKKKCACGGTVKDEVIELQGDQRKKIKEFLIKM   67 (77)
T ss_pred             CEEEEEEECCCCccEEEEECCCCchHhHHHHHHHHHHHcCCCcEEecCEEEEeCcHHHHHHHHHHHc
Confidence            489999999999999999999975 59999999999999999999874     24678888888764

This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.

>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation []

Probab=99.67  E-value=1.6e-16  Score=103.18  Aligned_cols=64  Identities=34%  Similarity=0.550  Sum_probs=50.1

Q ss_pred             CCcCeEEEEEEeeeCCeeEEEEecCC-CCcchHHHHHHHhhhhccccEEEecCC----------CCcchhhhhhc
Q psy14757         13 VQDGLVHIRIQQRNGRKTLTTVQGLS-SEYDLKKIVRACKKEFACNGTVIEVSR----------DTFPLCDFYRA   76 (90)
Q Consensus        13 ~~~~~IhIRiqqRngrK~vTtVeGL~-~~~dlKki~K~lKkkfaCgGtV~e~~e----------~~~~I~~~lr~   76 (90)
                      ++.+.|||++++|++||.||+|+||+ ..+|+++++|.||++|||+|||.+++.          +..+|.+||.+
T Consensus         2 ~~~~~I~I~~e~r~~~K~vT~V~gl~~~~~d~~~lak~lkk~~ac~~sv~~~~~k~~~I~iQGd~~~~i~~~L~~   76 (83)
T PF01253_consen    2 KEPPKIHIRVEKRRGRKFVTIVSGLELFGIDLKELAKELKKKFACGGSVTKDPGKGEEIQIQGDHRDEIKDLLVE   76 (83)
T ss_dssp             S-TTCEEEEEEESSSSEEEEEEES--STTSHHHHHHHHHHHHHTS-EEEEE-TTTSSEEEEESS-HHHHHHHHHH
T ss_pred             CCCCEEEEEEEeCcCCeEEEEEECCcccccCHHHHHHHHHHhccCceEEeecCCCCCEEEECCcHHHHHHHHHHH
Confidence            35789999999999999999999999 579999999999999999999987653          33456666654

SUI1 is a protein of 108 residues. Close homologs of SUI1 have been found [] in mammals, insects and plants. SUI1 is also evolutionary related to hypothetical proteins from Escherichia coli (yciH), Haemophilus influenzae (HI1225) and Methanococcus vannielii.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2OGH_A 1D1R_A 2IF1_A 2XZN_F 2XZM_F.

>PRK06824 translation initiation factor Sui1; Validated

Probab=99.65  E-value=1.8e-16  Score=111.30  Aligned_cols=73  Identities=26%  Similarity=0.415  Sum_probs=61.7

Q ss_pred             CcCeEEEEEEee-eCCeeEEEEecCC-CCcchHHHHHHHhhhhccccEEEec-----CCCCcchhhhhhccCCCCCCCCC
Q psy14757         14 QDGLVHIRIQQR-NGRKTLTTVQGLS-SEYDLKKIVRACKKEFACNGTVIEV-----SRDTFPLCDFYRATPSRGKNRVG   86 (90)
Q Consensus        14 ~~~~IhIRiqqR-ngrK~vTtVeGL~-~~~dlKki~K~lKkkfaCgGtV~e~-----~e~~~~I~~~lr~~~~~~~~~~~   86 (90)
                      .++.|||+++++ +++|.||+|+||+ .+.||++|+|.||++|+|||||+++     -++.+.|.+||.+.--+=| ++|
T Consensus        39 ~~~~vri~~~~kgr~gK~VTvI~Gl~~~~~dlk~l~K~LKkk~gcGGtvkd~~IeiQGD~r~~v~~~L~~~G~~~k-~~g  117 (118)
T PRK06824         39 GDGIVRVRRETKGRGGKTVTVITGVPLAEDALKELAKELKRRCGTGGTLKDGVIEIQGDHVELLLAELLKRGFKAK-KAG  117 (118)
T ss_pred             cCceEEEEEEEccCCCceEEEEeCCcCCHHHHHHHHHHHHHHhcCCceEecCEEEEcCcHHHHHHHHHHHCCCeEe-ecc
Confidence            466999988866 8999999999999 5799999999999999999999875     2477889999998765555 555


Q ss_pred             C
Q psy14757         87 G   87 (90)
Q Consensus        87 ~   87 (90)
                      |
T Consensus       118 g  118 (118)
T PRK06824        118 G  118 (118)
T ss_pred             C
Confidence            4

>PRK00939 translation initiation factor Sui1; Reviewed

Probab=99.64  E-value=3.4e-16  Score=106.50  Aligned_cols=66  Identities=21%  Similarity=0.406  Sum_probs=58.2

Q ss_pred             CCCcCeEEEEEEeeeCCeeEEEEecCC-CCcchHHHHHHHhhhhccccEEEec-----CCCCcchhhhhhcc
Q psy14757         12 DVQDGLVHIRIQQRNGRKTLTTVQGLS-SEYDLKKIVRACKKEFACNGTVIEV-----SRDTFPLCDFYRAT   77 (90)
Q Consensus        12 ~~~~~~IhIRiqqRngrK~vTtVeGL~-~~~dlKki~K~lKkkfaCgGtV~e~-----~e~~~~I~~~lr~~   77 (90)
                      ..+++.|||++++|+++|.||+|+||+ .++|+++++|.||++|+|||||+++     -++.+.|.+||.+.
T Consensus        20 ~~~~~~i~I~~ekr~~gK~VTiI~Gl~~~~~~lk~l~k~lKk~~gcGgsvk~~~I~iQGD~r~~v~~~L~~~   91 (99)
T PRK00939         20 AKEQQRIKIKVDKRRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTVKDGRIELQGDHRERVKELLIKM   91 (99)
T ss_pred             CccCceEEEEEEecCCCceEEEEeCCCCcchhHHHHHHHHHHHhCCCceEECCEEEEeCcHHHHHHHHHHHc
Confidence            345789999999999999999999999 5799999999999999999999865     24778888998863

>PRK07451 translation initiation factor Sui1; Validated

Probab=99.62  E-value=7.9e-16  Score=107.73  Aligned_cols=71  Identities=23%  Similarity=0.338  Sum_probs=55.3

Q ss_pred             CeEEEEEE-eee--CCeeEEEEecCCC-CcchHHHHHHHhhhhccccEEEec-----CCCCcchhhhhhccCCCCCCCCC
Q psy14757         16 GLVHIRIQ-QRN--GRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEV-----SRDTFPLCDFYRATPSRGKNRVG   86 (90)
Q Consensus        16 ~~IhIRiq-qRn--grK~vTtVeGL~~-~~dlKki~K~lKkkfaCgGtV~e~-----~e~~~~I~~~lr~~~~~~~~~~~   86 (90)
                      ...||||+ +|+  ++|.||+|+||+. ++||++|+|.||++|+|||||+++     -++.++|.+||.+..-+=| ++|
T Consensus        36 ~~~~irI~~~r~gR~GK~VTvV~Gl~~~~~dlk~LaK~LK~k~gcGGtvkd~~IelQGD~r~~v~~~L~~~Gf~~k-~~g  114 (115)
T PRK07451         36 QQQNLRVQATRSGRKGKTVTVITGFQHKPETLAKLLKQLKTQCGSGGTVKDNTIEIQGDHRQKILEILIKLGYKAK-ISG  114 (115)
T ss_pred             cceeEEEEEEecCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCceEcCCEEEEcCcHHHHHHHHHHHCCCeEe-ecc
Confidence            34455555 344  4589999999996 599999999999999999999876     2578899999998765544 444


Q ss_pred             C
Q psy14757         87 G   87 (90)
Q Consensus        87 ~   87 (90)
                      |
T Consensus       115 g  115 (115)
T PRK07451        115 G  115 (115)
T ss_pred             C
Confidence            4

>TIGR01159 DRP1 density-regulated protein DRP1

Probab=99.61  E-value=8.4e-16  Score=113.50  Aligned_cols=64  Identities=25%  Similarity=0.359  Sum_probs=54.8

Q ss_pred             CcCeEEEEEEeeeCCeeEEEEecCCC-CcchHHHHHHHhhhhccccEEEecCCCC----------cchhhhhhcc
Q psy14757         14 QDGLVHIRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEVSRDT----------FPLCDFYRAT   77 (90)
Q Consensus        14 ~~~~IhIRiqqRngrK~vTtVeGL~~-~~dlKki~K~lKkkfaCgGtV~e~~e~~----------~~I~~~lr~~   77 (90)
                      ..+.|+|++++|++||.||+|+||+. ++|+++++|.||++||||+||++++...          +.|.+||.+.
T Consensus        87 ~~~~V~I~~~~R~krK~VT~V~GLe~f~idlk~laK~lkkkfacG~SV~k~~~~~~eI~IQGD~~~~v~e~L~~~  161 (173)
T TIGR01159        87 LPQKVTIKREPRTKRKFVTVIKGLETFDIDLKKASKTFAQKFATGCSVSKSVTGKEEIVIQGDVMDDIEDYIHEK  161 (173)
T ss_pred             CCCeEEEEEEecCCCceEEEEeCCcCCCcCHHHHHHHHHHHhCCCCccccCCCCCCEEEecCCHHHHHHHHHHHH
Confidence            46799999999999999999999997 8999999999999999999998766433          4455666554

This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.

>PRK09019 translation initiation factor Sui1; Validated

Probab=99.60  E-value=1.2e-15  Score=105.79  Aligned_cols=73  Identities=29%  Similarity=0.398  Sum_probs=56.4

Q ss_pred             CCcCeEEEEEEeee--CCeeEEEEecCC-CCcchHHHHHHHhhhhccccEEEec-C----CCCcchhhhhhccCCCCCCC
Q psy14757         13 VQDGLVHIRIQQRN--GRKTLTTVQGLS-SEYDLKKIVRACKKEFACNGTVIEV-S----RDTFPLCDFYRATPSRGKNR   84 (90)
Q Consensus        13 ~~~~~IhIRiqqRn--grK~vTtVeGL~-~~~dlKki~K~lKkkfaCgGtV~e~-~----e~~~~I~~~lr~~~~~~~~~   84 (90)
                      .+.+.|.|+.+ |+  ++|.||+|+||+ .++||++|+|.||++|+|||||+++ .    ++.++|.+||.+.--+=| +
T Consensus        28 ~~~~~vri~~~-r~gRkGK~VTiI~Gl~~~~~dlk~l~K~lKkk~gcGGtvk~~~IelQGD~r~~v~~~L~~~Gf~~k-~  105 (108)
T PRK09019         28 KGDGIVRIQRQ-TSGRKGKGVCLITGLDLDDAELKKLAAELKKKCGCGGAVKDGVIEIQGDKRDLLKSLLEAKGMKVK-L  105 (108)
T ss_pred             CcCceEEEEEe-cCCCCCCeEEEEeCCcCCHHHHHHHHHHHHHHhcCCCeEEcCEEEEcCcHHHHHHHHHHHCCCeEE-e
Confidence            34555655555 44  566999999999 5799999999999999999999976 2    477899999987655444 4


Q ss_pred             CCC
Q psy14757         85 VGG   87 (90)
Q Consensus        85 ~~~   87 (90)
                      +||
T Consensus       106 ~gG  108 (108)
T PRK09019        106 AGG  108 (108)
T ss_pred             ccC
Confidence            443

>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic

Probab=99.60  E-value=2e-15  Score=102.75  Aligned_cols=66  Identities=26%  Similarity=0.410  Sum_probs=58.8

Q ss_pred             CCcCeEEEEEEee-eCCeeEEEEecCCC-CcchHHHHHHHhhhhccccEEEec-----CCCCcchhhhhhccC
Q psy14757         13 VQDGLVHIRIQQR-NGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEV-----SRDTFPLCDFYRATP   78 (90)
Q Consensus        13 ~~~~~IhIRiqqR-ngrK~vTtVeGL~~-~~dlKki~K~lKkkfaCgGtV~e~-----~e~~~~I~~~lr~~~   78 (90)
                      .+++.|+|++++| +++|.||+|+||+. .+|+++++|.||++|+|||||+++     -++.+.|.+||.+--
T Consensus        21 ~~~~~i~i~~e~rgr~gK~VTvV~Gl~~~~~~l~~l~k~LKk~~gcGgtvk~~~IeiQGD~~~~v~~~L~~~G   93 (101)
T TIGR01158        21 KEDQVVRIQRETRGRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTVKDGVIEIQGDHRDRVKDLLEKKG   93 (101)
T ss_pred             CCCceEEEEEEEecCCCCEEEEEeCCcCchhhHHHHHHHHHHHhcCCeeEeCCEEEEeCcHHHHHHHHHHHcC
Confidence            3789999999999 99999999999995 699999999999999999999764     257788999998853

This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.

>KOG3239|consensus

Probab=99.22  E-value=1.2e-11  Score=92.96  Aligned_cols=56  Identities=29%  Similarity=0.415  Sum_probs=51.1

Q ss_pred             cCeEEEEEEeeeCCeeEEEEecCCC-CcchHHHHHHHhhhhccccEEEecCCCCcch
Q psy14757         15 DGLVHIRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEVSRDTFPL   70 (90)
Q Consensus        15 ~~~IhIRiqqRngrK~vTtVeGL~~-~~dlKki~K~lKkkfaCgGtV~e~~e~~~~I   70 (90)
                      .++|.|....|+.||+||+|+||.- +||||+++|.|.++||||.||..+++..++|
T Consensus       100 pqkV~I~r~~R~KrK~VT~V~GL~~FdIdlk~aaK~fa~KFAtGaSVtk~a~kkdEI  156 (193)
T KOG3239|consen  100 PQKVIIKREARTKRKSVTVVKGLETFDIDLKKAAKFFAQKFATGASVTKNAEKKDEI  156 (193)
T ss_pred             CceeEeeecccCCceeEEEEechhhccccHHHHHHHHHHhhccCccccCCCCccceE
Confidence            5789999999999999999999997 8999999999999999999999977655544

>KOG2522|consensus

Probab=96.08  E-value=0.0064  Score=51.98  Aligned_cols=62  Identities=21%  Similarity=0.245  Sum_probs=52.2

Q ss_pred             cCeEEEEEEeeeCCeeEEEEecCCC-CcchHHHHHHHhhhhccccEEEecCC-----------CCcchhhhhhc
Q psy14757         15 DGLVHIRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEVSR-----------DTFPLCDFYRA   76 (90)
Q Consensus        15 ~~~IhIRiqqRngrK~vTtVeGL~~-~~dlKki~K~lKkkfaCgGtV~e~~e-----------~~~~I~~~lr~   76 (90)
                      --.|.|.+++|-|+|.||.|.||.. .+|...++..|.+.|+|.-||-+.|-           +...|.|+|.+
T Consensus       466 ~ppi~i~te~RagnKkVT~V~nle~fgiDp~S~aa~Lqk~c~aSTtv~e~pg~kg~eVqvQGnqih~iadlL~k  539 (560)
T KOG2522|consen  466 LPPIKIITEMRAGNKKVTRVSNLEVFGIDPESLAADLQKICSASTTVSESPGFKGAEVQVQGNQIHSIADLLNK  539 (560)
T ss_pred             CCceEEeehhhccCceEEEEccceeeccCHHHHHHHHHHHeeeeeecccCCCCCCceEEEecchhhHHHHHHHH
Confidence            4579999999999999999999997 79999999999999999998877653           33555666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	90
2ogh_A	108	Solution Structure Of Yeast Eif1 Length = 108		4e-16
2if1_A	126	Human Translation Initiation Factor Eif1, Nmr, 29 S		2e-13
2xzm_F	101	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-09

>pdb|2OGH|A Chain A, Solution Structure Of Yeast Eif1 Length = 108

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 47/62 (75%), Gaps = 2/62 (3%)
Query: 1  PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
          PFAD   G ++      +HIRIQQRNGRKTLTTVQG+  EYDLK+I++  KK+FACNG +
Sbjct: 11 PFADT--GDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNI 68
Query: 61 IE 62
          ++
Sbjct: 69 VK 70

>pdb|2IF1|A Chain A, Human Translation Initiation Factor Eif1, Nmr, 29 Structures Length = 126

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/66 (66%), Positives = 53/66 (80%), Gaps = 6/66 (9%)
Query: 1  PFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 56
          PFADA KG  DD+     +  +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+FAC
Sbjct: 25 PFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 82
Query: 57 NGTVIE 62
          NGTVIE
Sbjct: 83 NGTVIE 88

>pdb|2XZM|F Chain F, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 101

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 6  FKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIE 62
          F+ + DD Q   +HIR++QR GRK  TTV+G+  E+D +KI++  KK  +CN T++E
Sbjct: 8  FENNIDDFQTH-IHIRVEQRRGRKCFTTVEGIPPEFDYEKIMKYWKKWLSCNATIVE 63

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	90
2ogh_A	108	Eukaryotic translation initiation factor EIF-1; al	5e-24
2xzm_F	101	EIF1; ribosome, translation; 3.93A {Tetrahymena th	5e-22
2if1_A	126	EIF1, SUI1; translation initiation factor; NMR {Ho	2e-21
1d1r_A	116	Hypothetical 11.4 KD protein YCIH in PYRF-OSMB int	3e-09

>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae} Length = 108

 Score = 86.5 bits (214), Expect = 5e-24
 Identities = 36/62 (58%), Positives = 47/62 (75%), Gaps = 2/62 (3%)

Query: 1  PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
          PFAD   G ++      +HIRIQQRNGRKTLTTVQG+  EYDLK+I++  KK+FACNG +
Sbjct: 11 PFADT--GDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNI 68

Query: 61 IE 62
          ++
Sbjct: 69 VK 70

>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F Length = 101

 Score = 81.1 bits (200), Expect = 5e-22
 Identities = 24/59 (40%), Positives = 37/59 (62%)

Query: 4  DAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIE 62
          D    +  D     +HIR++QR GRK  TTV+G+  E+D +KI++  KK  +CN T++E
Sbjct: 5  DFQFENNIDDFQTHIHIRVEQRRGRKCFTTVEGIPPEFDYEKIMKYWKKWLSCNATIVE 63

>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1 Length = 126

 Score = 80.4 bits (198), Expect = 2e-21
 Identities = 42/64 (65%), Positives = 51/64 (79%), Gaps = 2/64 (3%)

Query: 1  PFADAFKGSEDDV--QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNG 58
          PFADA KG +      +  +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+FACNG
Sbjct: 25 PFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNG 84

Query: 59 TVIE 62
          TVIE
Sbjct: 85 TVIE 88

>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1 Length = 116

 Score = 48.7 bits (116), Expect = 3e-09
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 14 QDGLVHIRIQ-QRNGRKTLTTVQGLS-SEYDLKKIVRACKKEFACNGTVIE 62
           DG+V I+ Q      K +  + G+   + +L K+    KK+  C G V +
Sbjct: 29 GDGVVRIQRQTSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKD 79

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	90
2ogh_A	108	Eukaryotic translation initiation factor EIF-1; al	99.91
2if1_A	126	EIF1, SUI1; translation initiation factor; NMR {Ho	99.9
2xzm_F	101	EIF1; ribosome, translation; 3.93A {Tetrahymena th	99.86
1d1r_A	116	Hypothetical 11.4 KD protein YCIH in PYRF-OSMB int	99.73

>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}

Probab=99.91  E-value=8.8e-25  Score=148.98  Aligned_cols=75  Identities=51%  Similarity=0.917  Sum_probs=66.6

Q ss_pred             CCcccCCCCCCCCCcCeEEEEEEeeeCCeeEEEEecCCCCcchHHHHHHHhhhhccccEEEecCCCC----------cch
Q psy14757          1 PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEVSRDT----------FPL   70 (90)
Q Consensus         1 pfa~~~~~d~~~~~~~~IhIRiqqRngrK~vTtVeGL~~~~dlKki~K~lKkkfaCgGtV~e~~e~~----------~~I   70 (90)
                      ||||+  +|+++++.++||||+++|+|||+||+|+||+.++|+++|+|+||++|||||||+++++++          ++|
T Consensus        11 pf~~~--~~~~~~~~~~V~Ir~~~R~g~K~VT~V~Gl~~~~dlk~lak~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v   88 (108)
T 2ogh_A           11 PFADT--GDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKV   88 (108)
T ss_dssp             CCCCC--CCCCCCCSCSEEEEEECCSSSCCEEEEECCCTTSCHHHHHHHHHHHHCCCEEEECCTTSSCEEEEESSCHHHH
T ss_pred             ccccc--cccccCCCCeEEEEEEEccCCceEEEEeCCCcchhHHHHHHHHHHHhcCceEEecCCCCceEEEEcCCHHHHH
Confidence            89998  445578899999999999999999999999999999999999999999999999996544          667


Q ss_pred             hhhhhcc
Q psy14757         71 CDFYRAT   77 (90)
Q Consensus        71 ~~~lr~~   77 (90)
                      ++||.+.
T Consensus        89 ~~~L~~~   95 (108)
T 2ogh_A           89 CEFMISQ   95 (108)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            7887765

>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1

Probab=99.90  E-value=1.2e-24  Score=152.61  Aligned_cols=77  Identities=57%  Similarity=0.864  Sum_probs=68.2

Q ss_pred             CCcccCCCC--CCCCCcCeEEEEEEeeeCCeeEEEEecCCCCcchHHHHHHHhhhhccccEEEecCCC----------Cc
Q psy14757          1 PFADAFKGS--EDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEVSRD----------TF   68 (90)
Q Consensus         1 pfa~~~~~d--~~~~~~~~IhIRiqqRngrK~vTtVeGL~~~~dlKki~K~lKkkfaCgGtV~e~~e~----------~~   68 (90)
                      ||||+.+++  ..+++.++||||+++|+|||+||+|+||+.++||++|+|+||++|||||||++++++          .+
T Consensus        25 pfa~~~~~~~~~~~g~~~~V~Ir~~~R~grK~VT~V~GL~~~~dlk~laK~LKkk~acgGtVk~~~e~g~~I~IQGD~r~  104 (126)
T 2if1_A           25 PFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRK  104 (126)
T ss_dssp             TTSSCCCCSSCCSCSCTTCEECCCCCSSSSCCBCEEBSCCTTSCHHHHHTTHHHHTCCCEEEECCTTTSSEEEESBCCHH
T ss_pred             chhhhccccccccCCCCCeEEEEEEeecCCccEEEEeCCCCchhHHHHHHHHHHHhcCCeEEecCCCCccEEEEcCCHHH
Confidence            899987766  346788999999999999999999999999999999999999999999999998654          46


Q ss_pred             chhhhhhcc
Q psy14757         69 PLCDFYRAT   77 (90)
Q Consensus        69 ~I~~~lr~~   77 (90)
                      +|++||.+.
T Consensus       105 ~I~~~L~~~  113 (126)
T 2if1_A          105 NICQFLVEI  113 (126)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            677888765

>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F

Probab=99.86  E-value=7e-22  Score=133.72  Aligned_cols=64  Identities=36%  Similarity=0.634  Sum_probs=57.8

Q ss_pred             CcCeEEEEEEeeeCCeeEEEEecCCCCcchHHHHHHHhhhhccccEEEecCCC----------Ccchhhhhhcc
Q psy14757         14 QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEVSRD----------TFPLCDFYRAT   77 (90)
Q Consensus        14 ~~~~IhIRiqqRngrK~vTtVeGL~~~~dlKki~K~lKkkfaCgGtV~e~~e~----------~~~I~~~lr~~   77 (90)
                      .+++||||+++|+|||.||+|+||+.++||++|+|+||++|||||||++++++          .++|++||.+.
T Consensus        15 ~~~~v~I~~~~R~g~K~VT~V~Gl~~~~dlk~laK~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~   88 (101)
T 2xzm_F           15 FQTHIHIRVEQRRGRKCFTTVEGIPPEFDYEKIMKYWKKWLSCNATIVEEDEGKKVIKLNGDHRNQIQQFLSEE   88 (101)
T ss_dssp             CSCCEEEEEEEEETTEEEEEEECCCTTSCTHHHHHHHHHHHTSCCCEEECSTTCEEEEEESCCHHHHHHHHHHH
T ss_pred             CCCeEEEEEEeccCCccEEEEecCCCchhHHHHHHHHHHHhcCCeEEecCCCCceEEEEeCcHHHHHHHHHHHc
Confidence            57899999999999999999999998899999999999999999999999664          46677887765

>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1

Probab=99.73  E-value=9.7e-19  Score=121.22  Aligned_cols=67  Identities=27%  Similarity=0.393  Sum_probs=58.2

Q ss_pred             CCCCcCeEEEEEEeeeCC--eeEEEEecCCC-CcchHHHHHHHhhhhccccEEEecC-----CCCcchhhhhhccC
Q psy14757         11 DDVQDGLVHIRIQQRNGR--KTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEVS-----RDTFPLCDFYRATP   78 (90)
Q Consensus        11 ~~~~~~~IhIRiqqRngr--K~vTtVeGL~~-~~dlKki~K~lKkkfaCgGtV~e~~-----e~~~~I~~~lr~~~   78 (90)
                      ...++++|||+++ |+||  |.||+|+||+. ++||++|+|+||++|||||||+++.     ++.+.|++||.+.-
T Consensus        26 ~p~~~~~V~I~~e-r~gR~GK~VT~V~Gl~~~~~dlk~laK~LKkk~acgGtVk~~~IeiQGD~r~~i~~~L~~~G  100 (116)
T 1d1r_A           26 RPKGDGVVRIQRQ-TSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKDGVIEIQGDKRDLLKSLLEAKG  100 (116)
T ss_dssp             --CCCCEEEEEEC-CCSSSSCCCEEEECCCSCHHHHHHHHHHHTTSSSSCCBCCSSCEEECSCCHHHHHHHHHHHT
T ss_pred             CCCCCCeEEEEEE-eCCCCCCeEEEEeCCcCchhhHHHHHHHHHHHhcCCcEEcCCEEEEeCcHHHHHHHHHHHcC
Confidence            3456899999999 8888  99999999997 8999999999999999999998652     57899999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	90
d2if1a_	126	d.64.1.1 (A:) Eukaryotic translation initiation fa	7e-23
d1d1ra_	83	d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}	3e-11

>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: Eukaryotic translation initiation factor eIF-1 (SUI1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.0 bits (205), Expect = 7e-23
 Identities = 42/64 (65%), Positives = 51/64 (79%), Gaps = 2/64 (3%)

Query: 1  PFADAFKGSED--DVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNG 58
          PFADA KG +      +  +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+FACNG
Sbjct: 25 PFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNG 84

Query: 59 TVIE 62
          TVIE
Sbjct: 85 TVIE 88

>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]} Length = 83

class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: YciH
species: Escherichia coli [TaxId: 562]

 Score = 51.9 bits (125), Expect = 3e-11
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 15 DGLVHIRIQQRNGR--KTLTTVQGLS-SEYDLKKIVRACKKEFACNGTVIE 62
          DG+V I+ Q  +GR  K +  + G+   + +L K+    KK+  C G V +
Sbjct: 3  DGVVRIQRQ-TSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKD 52

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	90
d2if1a_	126	Eukaryotic translation initiation factor eIF-1 (SU	99.85
d1d1ra_	83	YciH {Escherichia coli [TaxId: 562]}	99.46

>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: Eukaryotic translation initiation factor eIF-1 (SUI1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1e-22  Score=141.09  Aligned_cols=77  Identities=57%  Similarity=0.890  Sum_probs=67.1

Q ss_pred             CCcccCCCCCC--CCCcCeEEEEEEeeeCCeeEEEEecCCCCcchHHHHHHHhhhhccccEEEecCC----------CCc
Q psy14757          1 PFADAFKGSED--DVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEVSR----------DTF   68 (90)
Q Consensus         1 pfa~~~~~d~~--~~~~~~IhIRiqqRngrK~vTtVeGL~~~~dlKki~K~lKkkfaCgGtV~e~~e----------~~~   68 (90)
                      ||||+..+++.  +.+++.||||+++|+|||.||+|+||+.++||++|+|+||++|||||||+++++          +.+
T Consensus        25 pf~d~~~~~~~~~~~~~~~I~I~~ekR~G~K~VT~I~Gl~~~~dlk~laK~lKk~~acggSVk~~~~~~~~I~IQGD~r~  104 (126)
T d2if1a_          25 PFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRK  104 (126)
T ss_dssp             TTSSCCCCSSCCSCSCTTCEECCCCCSSSSCCBCEEBSCCTTSCHHHHHTTHHHHTCCCEEEECCTTTSSEEEESBCCHH
T ss_pred             CccccccccccCCCCCcceEEEEEEecCCCCCeEEEECCCCcccHHHHHHHHHHhcCCCceEEeCCCCCcEEEEcccHHH
Confidence            89998777763  556789999999999999999999999889999999999999999999998764          446


Q ss_pred             chhhhhhcc
Q psy14757         69 PLCDFYRAT   77 (90)
Q Consensus        69 ~I~~~lr~~   77 (90)
                      .|.+||.+.
T Consensus       105 ~v~~~L~~~  113 (126)
T d2if1a_         105 NICQFLVEI  113 (126)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            667788764

>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: YciH
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=1.1e-14  Score=93.80  Aligned_cols=72  Identities=25%  Similarity=0.384  Sum_probs=55.7

Q ss_pred             cCeEEEEEEee-eCCeeEEEEecCC-CCcchHHHHHHHhhhhccccEEEecC-----CCCcchhhhhhccCCCCCCCCCC
Q psy14757         15 DGLVHIRIQQR-NGRKTLTTVQGLS-SEYDLKKIVRACKKEFACNGTVIEVS-----RDTFPLCDFYRATPSRGKNRVGG   87 (90)
Q Consensus        15 ~~~IhIRiqqR-ngrK~vTtVeGL~-~~~dlKki~K~lKkkfaCgGtV~e~~-----e~~~~I~~~lr~~~~~~~~~~~~   87 (90)
                      ...|+|+.+.+ +++|+||+|+||+ ..+|++++++.||++|+|||||+++.     ++.+.|.+||.+---+ .-++||
T Consensus         3 ~~~Vri~~e~kgR~GK~VT~I~Gl~~~~~dlk~l~k~lKk~~gcGgsvk~~~I~lQGd~~~~v~~~L~~~G~~-~K~~GG   81 (83)
T d1d1ra_           3 DGVVRIQRQTSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKDGVIEIQGDKRDLLKSLLEAKGMK-VKLAGG   81 (83)
T ss_dssp             CCEEEEEECCCSSSSCCCEEEECCCSCHHHHHHHHHHHTTSSSSCCBCCSSCEEECSCCHHHHHHHHHHHTCE-ECCCCC
T ss_pred             CeEEEEEEEcCCCCCCeEEEEECCcCCHHHHHHHHHHHHHHhcCCEEEECCEEEEeCcHHHHHHHHHHHcCCc-eeeecC
Confidence            34688887543 2349999999999 57999999999999999999998652     4778999999875333 234555