Psyllid ID: psy14758

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
Protein Sequence
MQERVWSSDLFMLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKKRFSTFYLSALSKCDPQKVGTYKIFATETLVTSSELKLSLGNLFQASCLGVNRAGMLLKCFLCDKRSC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccEEEEEEEEEcccEEEEEEEcccccccHHHHHHHHHHcccccccccEEEEcccccHHHHHHHHHccccccccEEEEEccEEEEEEccccccccccHHEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHccccccccccccEEEEEEEEccccEEEEEEcccccHccHHHHHHHHHHHHHHHHccccEEEcccccccEEEEEEEcEEEccccEEEEcHHHHHHHHHcHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mqervwssdlfmldpfadafkgseddvQDGLVHIRIQqrngrktlttvqglssEYDLKKIVRACKKKRFSTFYlsalskcdpqkvgtykiFATETLVTSSELKLSLGnlfqasclgvnraGMLLKCFLCDKRSC
Flexible Loop (DISEMBL)
mqervwssdlfmLDPFADAFKGSEDDVQDGLVHiriqqrngrktlttvqglsseydlKKIVRACKKKRFSTfylsalskcdpqkvGTYKIFATETLVTSSELKLSLGNLFQASCLGVNRAGMLLKCFLCDKRSC
Low Complexity Region (SEG)
MQERVWSSDLFMLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKKRFSTFYLSALSKCDPQKVGTYKIFATETLVTSSELKLSLGNLFQASCLGVNRAGMLLKCFLCDKRSC
Disordered region (IsUnstruct)
*****WSSDLFMLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKKRFSTFYLSALSKCDPQKVGTYKIFATETLVTSSELKLSLGNLFQASCLGVNRAGMLLKCFLCD****
Disordered Region (DISOPRED)
*****WS**LFMLDPF*D************LVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKKRFSTFYLSALSKCDPQKVGTYKIFATETLVTSSELKLSLGNLFQASCLGVNRAGMLLKCFLCDKRS*
Disordered Region (DISEMBL)
MQERVWSSDLFMLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKKRFSTFYLSALSKCDPQKVGTYKIFATETLVTSSELKLSLGNLFQASCLGVNRAGMLLKCFLCDKRSC
Disordered Region (DISPRO)
**************PFA*A***SEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKKRFSTFYLSALSKCDPQKVGTYKIFATETLVTSSELKLSLGNLFQASCLGVNRAGMLLKCFLCDKR**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQERVWSSDLFMLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKKRFSTFYLSALSKCDPQKVGTYKIFATETLVTSSELKLSLGNLFQASCLGVNRAGMLLKCFLCDKRSC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	134	2.2.26 [Sep-21-2011]
Q9VZS3	110	Protein translation facto	yes	N/A	0.447	0.545	0.8	2e-22
P42678	110	Protein translation facto	yes	N/A	0.440	0.536	0.830	2e-22
P32911	108	Eukaryotic translation in	yes	N/A	0.425	0.527	0.559	7e-12
P79060	109	Protein translation facto	yes	N/A	0.380	0.467	0.636	2e-11
Q755R1	108	Protein translation facto	yes	N/A	0.425	0.527	0.542	2e-11
P48024	113	Eukaryotic translation in	no	N/A	0.343	0.407	0.596	4e-09
Q5RFF4	113	Eukaryotic translation in	no	N/A	0.343	0.407	0.596	4e-09
P41567	113	Eukaryotic translation in	yes	N/A	0.343	0.407	0.596	4e-09
Q5E938	113	Eukaryotic translation in	yes	N/A	0.343	0.407	0.596	4e-09
Q94JV4	113	Protein translation facto	yes	N/A	0.410	0.486	0.545	4e-09

>sp|Q9VZS3|SUI1_DROME Protein translation factor SUI1 homolog OS=Drosophila melanogaster GN=CG17737 PE=1 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/60 (80%), Positives = 55/60 (91%)

Query: 8  SDLFMLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
           +L   DPFADA KG++DD+QDGLVHIRIQQRNGRKTLTTVQGLS+EYDLKKIVR+CKK+
Sbjct: 4  QNLNTRDPFADAIKGNDDDIQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRSCKKE 63

Probably involved in translation.
Drosophila melanogaster (taxid: 7227)

>sp|P42678|SUI1_ANOGA Protein translation factor SUI1 homolog OS=Anopheles gambiae GN=AGAP006459 PE=3 SV=1

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/59 (83%), Positives = 54/59 (91%)

Query: 9  DLFMLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
          +L   DPFADA KG++ DVQDGLVHIRIQQRNGRKTLTTVQGLS+EYDLKKIVRACKK+
Sbjct: 5  NLNTFDPFADAIKGADYDVQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRACKKE 63

Probably involved in translation.

Anopheles gambiae (taxid: 7165)

>sp|P32911|SUI1_YEAST Eukaryotic translation initiation factor eIF-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SUI1 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 41/59 (69%), Gaps = 2/59 (3%)

Query: 8  SDLFMLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKK 66
           +L   DPFAD   G ++      +HIRIQQRNGRKTLTTVQG+  EYDLK+I++  KK
Sbjct: 4  ENLKSFDPFADT--GDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKK 60

Additional factor that functions in concert with eIF-2 and the initiator tRNA in directing the ribosome to the proper start site of translation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P79060|SUI1_SCHPO Protein translation factor sui1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sui1 PE=3 SV=3

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 41/55 (74%), Gaps = 4/55 (7%)

Query: 13 LDPFADAFKGSEDDVQD-GLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKK 66
          +DPFAD     +DD Q    +HIRIQQRNGRKTLTTVQGL  E+D K+I+RA KK
Sbjct: 10 VDPFADT---GDDDAQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRALKK 61

Additional factor that functions in concert with eIF-2 and the initiator tRNA in directing the ribosome to the proper start site of translation.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q755R1|SUI1_ASHGO Protein translation factor SUI1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SUI1A PE=3 SV=1

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 2/59 (3%)

Query: 8  SDLFMLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKK 66
           +L   DPFAD   G ++      +HIRIQQRNGRKTLTTVQG+  EYDLK+I++  +K
Sbjct: 4  ENLKSFDPFADT--GDDEASSSNYIHIRIQQRNGRKTLTTVQGIPEEYDLKRILKVLRK 60

Additional factor that functions in concert with eIF-2 and the initiator tRNA in directing the ribosome to the proper start site of translation.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|P48024|EIF1_MOUSE Eukaryotic translation initiation factor 1 OS=Mus musculus GN=Eif1 PE=2 SV=2

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 38/52 (73%), Gaps = 6/52 (11%)

Query: 9  DLFMLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYD 56
          +L   DPFADA KG  DD+     +  +HIRIQQRNGRKTLTTVQG++ +YD
Sbjct: 6  NLHSFDPFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYD 55

Necessary for scanning and involved in initiation site selection. Promotes the assembly of 48S ribosomal complexes at the authentic initiation codon of a conventional capped mRNA.

Mus musculus (taxid: 10090)

>sp|Q5RFF4|EIF1_PONAB Eukaryotic translation initiation factor 1 OS=Pongo abelii GN=EIF1 PE=3 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 38/52 (73%), Gaps = 6/52 (11%)

Query: 9  DLFMLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYD 56
          +L   DPFADA KG  DD+     +  +HIRIQQRNGRKTLTTVQG++ +YD
Sbjct: 6  NLHSFDPFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYD 55

Necessary for scanning and involved in initiation site selection. Promotes the assembly of 48S ribosomal complexes at the authentic initiation codon of a conventional capped mRNA.

Pongo abelii (taxid: 9601)

>sp|P41567|EIF1_HUMAN Eukaryotic translation initiation factor 1 OS=Homo sapiens GN=EIF1 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 38/52 (73%), Gaps = 6/52 (11%)

Query: 9  DLFMLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYD 56
          +L   DPFADA KG  DD+     +  +HIRIQQRNGRKTLTTVQG++ +YD
Sbjct: 6  NLHSFDPFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYD 55

Necessary for scanning and involved in initiation site selection. Promotes the assembly of 48S ribosomal complexes at the authentic initiation codon of a conventional capped mRNA.

Homo sapiens (taxid: 9606)

>sp|Q5E938|EIF1_BOVIN Eukaryotic translation initiation factor 1 OS=Bos taurus GN=EIF1 PE=3 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 38/52 (73%), Gaps = 6/52 (11%)

Query: 9  DLFMLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYD 56
          +L   DPFADA KG  DD+     +  +HIRIQQRNGRKTLTTVQG++ +YD
Sbjct: 6  NLHSFDPFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYD 55

Necessary for scanning and involved in initiation site selection. Promotes the assembly of 48S ribosomal complexes at the authentic initiation codon of a conventional capped mRNA.

Bos taurus (taxid: 9913)

>sp|Q94JV4|SUI12_ARATH Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 PE=3 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 35/55 (63%)

Query: 13 LDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
           DPFADA            VHIR+QQRNGRK+LTTVQGL  EY   KI++  KK+
Sbjct: 12 FDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKE 66

Probably involved in translation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
383858676	765	PREDICTED: la-related protein 4-like [Me	0.440	0.077	0.881	4e-23
380028007	861	PREDICTED: uncharacterized protein LOC10	0.440	0.068	0.881	4e-23
345495153	775	PREDICTED: hypothetical protein LOC10012	0.440	0.076	0.881	4e-23
328781153	763	PREDICTED: la-related protein 4-like [Ap	0.440	0.077	0.881	4e-23
307179421	836	La-related protein 4 [Camponotus florida	0.440	0.070	0.881	4e-23
350401769	110	PREDICTED: protein translation factor SU	0.440	0.536	0.881	4e-22
149898906	110	translation initiation factor 1 [Triatom	0.440	0.536	0.881	5e-22
193620426	110	PREDICTED: protein translation factor SU	0.440	0.536	0.864	6e-22
148596790	68	Sui1 translation initiation factor [Anth	0.440	0.867	0.864	8e-22
242023184	110	translation factor sui1, putative [Pedic	0.440	0.536	0.864	9e-22

>gi|383858676|ref|XP_003704825.1| PREDICTED: la-related protein 4-like [Megachile rotundata]

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/59 (88%), Positives = 55/59 (93%)

Query: 9  DLFMLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
          +L   DPFADA KGS+DDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKK+
Sbjct: 5  NLNTFDPFADAIKGSDDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKE 63

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028007|ref|XP_003697703.1| PREDICTED: uncharacterized protein LOC100872910 [Apis florea]

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/59 (88%), Positives = 55/59 (93%)

Query: 9  DLFMLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
          +L   DPFADA KGS+DDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKK+
Sbjct: 5  NLNTFDPFADAIKGSDDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKE 63

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495153|ref|XP_001603906.2| PREDICTED: hypothetical protein LOC100120245 [Nasonia vitripennis]

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/59 (88%), Positives = 55/59 (93%)

Query: 9  DLFMLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
          +L   DPFADA KGS+DDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKK+
Sbjct: 5  NLNTFDPFADAIKGSDDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKE 63

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328781153|ref|XP_394951.3| PREDICTED: la-related protein 4-like [Apis mellifera]

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/59 (88%), Positives = 55/59 (93%)

Query: 9  DLFMLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
          +L   DPFADA KGS+DDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKK+
Sbjct: 5  NLNTFDPFADAIKGSDDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKE 63

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307179421|gb|EFN67745.1| La-related protein 4 [Camponotus floridanus]

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/59 (88%), Positives = 55/59 (93%)

Query: 9  DLFMLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
          +L   DPFADA KGS+DDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKK+
Sbjct: 5  NLNTFDPFADAIKGSDDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKE 63

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401769|ref|XP_003486256.1| PREDICTED: protein translation factor SUI1 homolog [Bombus impatiens] gi|307207800|gb|EFN85418.1| Protein translation factor SUI1-like protein [Harpegnathos saltator] gi|332024011|gb|EGI64229.1| Protein translation factor SUI1-like protein [Acromyrmex echinatior]

 Score =  109 bits (272), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 52/59 (88%), Positives = 55/59 (93%)

Query: 9  DLFMLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
          +L   DPFADA KGS+DDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKK+
Sbjct: 5  NLNTFDPFADAIKGSDDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKE 63

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|149898906|gb|ABR27954.1| translation initiation factor 1 [Triatoma infestans]

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 52/59 (88%), Positives = 55/59 (93%)

Query: 9  DLFMLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
          +L   DPFADA KGS+DDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKK+
Sbjct: 5  NLNTFDPFADAIKGSDDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKE 63

Source: Triatoma infestans

Species: Triatoma infestans

Genus: Triatoma

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193620426|ref|XP_001948896.1| PREDICTED: protein translation factor SUI1 homolog [Acyrthosiphon pisum]

 Score =  108 bits (270), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 51/59 (86%), Positives = 56/59 (94%)

Query: 9  DLFMLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
          +L + DPFADA KG++DDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKK+
Sbjct: 5  NLNVFDPFADAIKGADDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKE 63

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|148596790|dbj|BAF63625.1| Sui1 translation initiation factor [Antheraea yamamai]

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 51/59 (86%), Positives = 54/59 (91%)

Query: 9  DLFMLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
          +L   DPFADA K SEDDVQDGLVH+RIQQRNGRKTLTTVQGLSSEYDLKKIVRACKK+
Sbjct: 5  NLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKE 63

Source: Antheraea yamamai

Species: Antheraea yamamai

Genus: Antheraea

Family: Saturniidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023184|ref|XP_002432016.1| translation factor sui1, putative [Pediculus humanus corporis] gi|212517367|gb|EEB19278.1| translation factor sui1, putative [Pediculus humanus corporis]

 Score =  108 bits (269), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 51/59 (86%), Positives = 55/59 (93%)

Query: 9  DLFMLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
          +L   DPFADA KG++DDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKK+
Sbjct: 5  NLNTFDPFADAIKGADDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKE 63

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
FB|FBgn0035423	110	CG17737 [Drosophila melanogast	0.402	0.490	0.870	9e-22
UNIPROTKB|F1NIG7	116	EIF1B "Uncharacterized protein	0.477	0.551	0.577	1e-13
UNIPROTKB|Q5E938	113	EIF1 "Eukaryotic translation i	0.425	0.504	0.603	1.3e-13
UNIPROTKB|J9PA62	113	EIF1 "Uncharacterized protein"	0.425	0.504	0.603	1.3e-13
UNIPROTKB|K7EM18	121	EIF1 "Eukaryotic translation i	0.425	0.471	0.603	1.3e-13
UNIPROTKB|P41567	113	EIF1 "Eukaryotic translation i	0.425	0.504	0.603	1.3e-13
UNIPROTKB|F2Z553	113	EIF1 "Uncharacterized protein"	0.425	0.504	0.603	1.3e-13
MGI|MGI:105125	113	Eif1 "eukaryotic translation i	0.425	0.504	0.603	1.3e-13
RGD|1306308	113	Eif1 "eukaryotic translation i	0.425	0.504	0.603	1.3e-13
ZFIN|ZDB-GENE-030131-956	113	eif1b "eukaryotic translation	0.432	0.513	0.612	1.6e-13

FB|FBgn0035423 CG17737 [Drosophila melanogaster (taxid:7227)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 47/54 (87%), Positives = 53/54 (98%)

Query:    14 DPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
             DPFADA KG++DD+QDGLVHIRIQQRNGRKTLTTVQGLS+EYDLKKIVR+CKK+
Sbjct:    10 DPFADAIKGNDDDIQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRSCKKE 63

GO:0006412 "translation" evidence=NAS

GO:0006413 "translational initiation" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0071456 "cellular response to hypoxia" evidence=IMP

UNIPROTKB|F1NIG7 EIF1B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 41/71 (57%), Positives = 51/71 (71%)

Query:     2 QERVWS-SDLFMLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYD 56
             Q R+ S  +L   DPFADA KG  DD+     +  +HIRIQQRNGRKTLTTVQG++ +YD
Sbjct:     1 QNRMSSIQNLQSFDPFADATKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYD 58

Query:    57 LKKIVRACKKK 67
              KK+V+A KKK
Sbjct:    59 KKKLVKAFKKK 69

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|Q5E938 EIF1 "Eukaryotic translation initiation factor 1" [Bos taurus (taxid:9913)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 38/63 (60%), Positives = 47/63 (74%)

Query:     9 DLFMLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 64
             +L   DPFADA KG  DD+     +  +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A 
Sbjct:     6 NLHSFDPFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAF 63

Query:    65 KKK 67
             KKK
Sbjct:    64 KKK 66

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|J9PA62 EIF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 38/63 (60%), Positives = 47/63 (74%)

Query:     9 DLFMLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 64
             +L   DPFADA KG  DD+     +  +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A 
Sbjct:     6 NLHSFDPFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAF 63

Query:    65 KKK 67
             KKK
Sbjct:    64 KKK 66

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|K7EM18 EIF1 "Eukaryotic translation initiation factor 1" [Homo sapiens (taxid:9606)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 38/63 (60%), Positives = 47/63 (74%)

Query:     9 DLFMLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 64
             +L   DPFADA KG  DD+     +  +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A 
Sbjct:     6 NLHSFDPFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAF 63

Query:    65 KKK 67
             KKK
Sbjct:    64 KKK 66

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|P41567 EIF1 "Eukaryotic translation initiation factor 1" [Homo sapiens (taxid:9606)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 38/63 (60%), Positives = 47/63 (74%)

Query:     9 DLFMLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 64
             +L   DPFADA KG  DD+     +  +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A 
Sbjct:     6 NLHSFDPFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAF 63

Query:    65 KKK 67
             KKK
Sbjct:    64 KKK 66

GO:0003743 "translation initiation factor activity" evidence=NAS

GO:0006413 "translational initiation" evidence=NAS

GO:0006950 "response to stress" evidence=NAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0006446 "regulation of translational initiation" evidence=TAS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=TAS

UNIPROTKB|F2Z553 EIF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 38/63 (60%), Positives = 47/63 (74%)

Query:     9 DLFMLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 64
             +L   DPFADA KG  DD+     +  +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A 
Sbjct:     6 NLHSFDPFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAF 63

Query:    65 KKK 67
             KKK
Sbjct:    64 KKK 66

GO:0003743 "translation initiation factor activity" evidence=IEA

MGI|MGI:105125 Eif1 "eukaryotic translation initiation factor 1" [Mus musculus (taxid:10090)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 38/63 (60%), Positives = 47/63 (74%)

Query:     9 DLFMLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 64
             +L   DPFADA KG  DD+     +  +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A 
Sbjct:     6 NLHSFDPFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAF 63

Query:    65 KKK 67
             KKK
Sbjct:    64 KKK 66

GO:0003674 "molecular_function" evidence=ND

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006412 "translation" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0009048 "dosage compensation by inactivation of X chromosome" evidence=IMP

RGD|1306308 Eif1 "eukaryotic translation initiation factor 1" [Rattus norvegicus (taxid:10116)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 38/63 (60%), Positives = 47/63 (74%)

Query:     9 DLFMLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 64
             +L   DPFADA KG  DD+     +  +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A 
Sbjct:     6 NLHSFDPFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAF 63

Query:    65 KKK 67
             KKK
Sbjct:    64 KKK 66

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0009048 "dosage compensation by inactivation of X chromosome" evidence=IEA;ISO

ZFIN|ZDB-GENE-030131-956 eif1b "eukaryotic translation initiation factor 1B" [Danio rerio (taxid:7955)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 38/62 (61%), Positives = 47/62 (75%)

Query:     9 DLFMLDPFADAFKGSEDDVQDGL---VHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACK 65
             +L   DPFADA KG +D +  G    +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A K
Sbjct:     6 NLQTFDPFADATKG-DDRLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFK 64

Query:    66 KK 67
             KK
Sbjct:    65 KK 66

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P42678	SUI1_ANOGA	No assigned EC number	0.8305	0.4402	0.5363	yes	N/A
Q9VZS3	SUI1_DROME	No assigned EC number	0.8	0.4477	0.5454	yes	N/A
P41567	EIF1_HUMAN	No assigned EC number	0.5961	0.3432	0.4070	yes	N/A
Q5E938	EIF1_BOVIN	No assigned EC number	0.5961	0.3432	0.4070	yes	N/A
P41568	SUI11_ARATH	No assigned EC number	0.5454	0.4104	0.4867	yes	N/A
P79060	SUI1_SCHPO	No assigned EC number	0.6363	0.3805	0.4678	yes	N/A
P32911	SUI1_YEAST	No assigned EC number	0.5593	0.4253	0.5277	yes	N/A
Q94JV4	SUI12_ARATH	No assigned EC number	0.5454	0.4104	0.4867	yes	N/A
Q755R1	SUI1_ASHGO	No assigned EC number	0.5423	0.4253	0.5277	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	134
TIGR01160	110	TIGR01160, SUI1_MOF2, translation initiation facto	5e-22
cd11566	84	cd11566, eIF1_SUI1, Eukaryotic initiation factor 1	7e-22
pfam01253	74	pfam01253, SUI1, Translation initiation factor SUI	7e-11
COG0023	104	COG0023, SUI1, Translation initiation factor 1 (eI	2e-09
cd00474	78	cd00474, eIF1_SUI1_like, Eukaryotic initiation fac	5e-07
cd11607	86	cd11607, DENR_C, C-terminal domain of DENR and rel	8e-05

>gnl|CDD|130228 TIGR01160, SUI1_MOF2, translation initiation factor SUI1, eukaryotic

 Score = 83.7 bits (207), Expect = 5e-22
 Identities = 39/57 (68%), Positives = 43/57 (75%), Gaps = 5/57 (8%)

Query: 14 DPFADAFKGSEDDVQDG---LVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
          DPFADA  G +D    G    +HIRIQQRNGRKTLTTVQGL  EYDLKKIV+A KK+
Sbjct: 9  DPFADA--GDDDSALPGTSNYIHIRIQQRNGRKTLTTVQGLPKEYDLKKIVKALKKE 63

Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation [Protein synthesis, Translation factors]. Length = 110

>gnl|CDD|211318 cd11566, eIF1_SUI1, Eukaryotic initiation factor 1

 Score = 82.6 bits (205), Expect = 7e-22
 Identities = 29/38 (76%), Positives = 34/38 (89%)

Query: 30 GLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
          G +HIRIQQRNGRKTLTTVQGL  E+DLKKI++A KK+
Sbjct: 1  GYIHIRIQQRNGRKTLTTVQGLPEEFDLKKILKAFKKE 38

eIF1/SUI1 (eukaryotic initiation factor 1) plays an important role in accurate initiator codon recognition during translation initiation. eIF1 interacts with 18S rRNA in the 40S ribosomal subunit during eukaryotic translation initiation. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown. Length = 84

>gnl|CDD|216391 pfam01253, SUI1, Translation initiation factor SUI1

 Score = 54.0 bits (131), Expect = 7e-11
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 28 QDGLVHIRIQQRNGRKTLTTVQGL-SSEYDLKKIVRACKKK 67
          +D  + IR ++R G KT+T V GL     DLKK+ +  KKK
Sbjct: 3  EDQKIRIRREKRRGGKTVTVVTGLELFGIDLKKLAKELKKK 43

Length = 74

>gnl|CDD|223102 COG0023, SUI1, Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]

 Score = 51.1 bits (123), Expect = 2e-09
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 28 QDGLVHIRIQQRNGRKTLTTVQGL-SSEYDLKKIVRACKKK 67
           D +V IR + R   KT+T ++GL   + DLKK+ +  KKK
Sbjct: 25 GDQIVRIRRETRRKGKTVTIIEGLDLKDIDLKKLAKELKKK 65

Length = 104

>gnl|CDD|211317 cd00474, eIF1_SUI1_like, Eukaryotic initiation factor 1 and related proteins

 Score = 44.0 bits (104), Expect = 5e-07
 Identities = 16/36 (44%), Positives = 26/36 (72%)

Query: 32 VHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
          +HI+++QR+G K +T V+GL +  DL+K+    KKK
Sbjct: 2  IHIKVEQRSGGKKVTKVEGLPAYIDLRKLADELKKK 37

Members of the eIF1/SUI1 (eukaryotic initiation factor 1) family are found in eukaryotes, archaea, and some bacteria; eukaryotic members are understood to play an important role in accurate initiator codon recognition during translation initiation. eIF1 interacts with 18S rRNA in the 40S ribosomal subunit during eukaryotic translation initiation. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown. The function of non-eukaryotic family members is also unclear. Length = 78

>gnl|CDD|211320 cd11607, DENR_C, C-terminal domain of DENR and related proteins

 Score = 38.3 bits (90), Expect = 8e-05
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 6/43 (13%)

Query: 32 VHIRIQQRNGRKTLTTVQGLSSEY-DLKKIVRACKK--KRFST 71
          V I+   RN RK +TTV GL +   DLKK   A K   K+F+ 
Sbjct: 3  VTIKRISRNKRKFVTTVTGLETFGIDLKK---AAKLFAKKFAC 42

DENR (density regulated protein), together with MCT-1 (multiple copies T cell malignancies), has been shown to have similar function as eIF2D translation initiation factor (also known as ligatin), which is involved in the recruitment and delivery of aminoacyl-tRNAs to the P-site of the eukaryotic ribosome in a GTP-independent manner. Length = 86

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	134
KOG1770|consensus	112		100.0
TIGR01160	110	SUI1_MOF2 translation initiation factor SUI1, euka	99.97
COG0023	104	SUI1 Translation initiation factor 1 (eIF-1/SUI1)	99.89
cd00474	77	SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation fac	99.79
PRK00939	99	translation initiation factor Sui1; Reviewed	99.75
PRK06824	118	translation initiation factor Sui1; Validated	99.75
PRK09019	108	translation initiation factor Sui1; Validated	99.74
TIGR01158	101	SUI1_rel translation initation factor SUI1, putati	99.74
PF01253	83	SUI1: Translation initiation factor SUI1; InterPro	99.74
PRK07451	115	translation initiation factor Sui1; Validated	99.73
TIGR01159	173	DRP1 density-regulated protein DRP1. This protein	99.67
KOG3239|consensus	193		98.65
KOG2522|consensus	560		96.34
PF05046	87	Img2: Mitochondrial large subunit ribosomal protei	93.48

>KOG1770|consensus

Probab=100.00  E-value=7e-35  Score=217.47  Aligned_cols=97  Identities=46%  Similarity=0.656  Sum_probs=89.3

Q ss_pred             ccccCCCCCCcccccCCC-CCCCCCCCeEEEEEeeeeCceeEEEEecCCCCcCHHHHHHHHHhhccccccccccccCCCC
Q psy14758          5 VWSSDLFMLDPFADAFKG-SEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKKRFSTFYLSALSKCDPQ   83 (134)
Q Consensus         5 ~si~NL~sfDPFada~~~-dd~~~eqq~IHIRiqQRngRK~VTtVEGL~~~~DLKKL~K~LKKkf~~~~~~~~~~~c~~~   83 (134)
                      |+|+|+.+|||||++.++ ++...+.++||||||||||||++|||||||.+||+|+|+++|||+|          +||  
T Consensus         2 ~~iq~~~~~dpfad~~~~~~~~~g~~~~ihIRIQQRnGrKtlTtVQgi~~Eyd~kril~~lKKef----------~Cn--   69 (112)
T KOG1770|consen    2 HIIQNLEDFDPFADARAGEDDIAGTEKYIHIRIQQRNGRKTLTTVQGIPMEYDLKKILKSLKKEF----------ACN--   69 (112)
T ss_pred             ccccchhhcCcccccccccccccCccceEEEEEEeeCCceEEEEecCChhhhhHHHHHHHHHHhc----------cCC--
Confidence            679999999999999877 3345666799999999999999999999999999999999999999          999  


Q ss_pred             CccceeeeecceEEeCchhhccCCCeEEEeecCCcccccchhhhhhcc
Q psy14758         84 KVGTYKIFATETLVTSSELKLSLGNLFQASCLGVNRAGMLLKCFLCDK  131 (134)
Q Consensus        84 ~~~~~~~~a~gt~~~~~~~~~~~~~~iq~~~qG~~r~~~~~~~~l~~~  131 (134)
                                ||++.++|    +|++|||  |||+|..|  ..||...
T Consensus        70 ----------Gtvved~e----~gevIQL--qGDqR~nv--~~fl~~~   99 (112)
T KOG1770|consen   70 ----------GTVVEDPE----YGEVIQL--QGDQRKNV--CQFLVQV   99 (112)
T ss_pred             ----------CeEecCcc----cCceEEe--ccchhhhH--HHHHHHh
Confidence                      99999999    5999999  99999999  9998753

>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic

Probab=99.97  E-value=8.3e-31  Score=194.25  Aligned_cols=97  Identities=47%  Similarity=0.656  Sum_probs=87.4

Q ss_pred             cccCCCCCCcccccCCCCCCC-CCCCeEEEEEeeeeCceeEEEEecCCCCcCHHHHHHHHHhhccccccccccccCCCCC
Q psy14758          6 WSSDLFMLDPFADAFKGSEDD-VQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKKRFSTFYLSALSKCDPQK   84 (134)
Q Consensus         6 si~NL~sfDPFada~~~dd~~-~eqq~IHIRiqQRngRK~VTtVEGL~~~~DLKKL~K~LKKkf~~~~~~~~~~~c~~~~   84 (134)
                      |++|+.+||||+|+.++++.. ..+++||||++||+|||+||+|+||++++|+|+|+|.||++|          +||   
T Consensus         1 ~~~~~~~~dpf~d~~~~~~~~~~~~~~I~Iri~qR~grK~VTiI~Gl~~~~dlk~l~K~lKkk~----------~cG---   67 (110)
T TIGR01160         1 SIQNLKSFDPFADAGDDDSALPGTSNYIHIRIQQRNGRKTLTTVQGLPKEYDLKKIVKALKKEF----------ACN---   67 (110)
T ss_pred             CcccccCCCCccccccccccccCccceEEEEEEEccCCccEEEEeccCChHHHHHHHHHHHHHh----------CCC---
Confidence            578999999999996655433 568899999999999999999999999999999999999999          999   


Q ss_pred             ccceeeeecceEEeCchhhccCCCeEEEeecCCcccccchhhhhhccc
Q psy14758         85 VGTYKIFATETLVTSSELKLSLGNLFQASCLGVNRAGMLLKCFLCDKR  132 (134)
Q Consensus        85 ~~~~~~~a~gt~~~~~~~~~~~~~~iq~~~qG~~r~~~~~~~~l~~~~  132 (134)
                               ||++.+++    .|+.||+  |||||+.+  ++||.++.
T Consensus        68 ---------GsVk~~~~----~~~~Iel--QGD~re~v--~~~L~~~g   98 (110)
T TIGR01160        68 ---------GTVIEDPE----MGEVIQL--QGDQRKNV--CEFLISQG   98 (110)
T ss_pred             ---------ceEEeCCC----CCCEEEE--eCcHHHHH--HHHHHHcC
Confidence                     99998776    3789999  99999999  99998764

Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.

>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=1.5e-23  Score=154.78  Aligned_cols=90  Identities=29%  Similarity=0.301  Sum_probs=78.4

Q ss_pred             ccccCCCCCCcccccCCCCCCCCC-CCeEEEEEeeeeCceeEEEEecCCC-CcCHHHHHHHHHhhccccccccccccCCC
Q psy14758          5 VWSSDLFMLDPFADAFKGSEDDVQ-DGLVHIRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKKRFSTFYLSALSKCDP   82 (134)
Q Consensus         5 ~si~NL~sfDPFada~~~dd~~~e-qq~IHIRiqQRngRK~VTtVEGL~~-~~DLKKL~K~LKKkf~~~~~~~~~~~c~~   82 (134)
                      ||..+....+|++..  -.+..++ ++.|+||+++||+||.||+|+||+. ++|+|+|+++||++|          ||| 
T Consensus         3 ~~~~~~~~~~p~e~~--~~~~~k~~~~~V~I~~e~rr~gK~VTiI~Gld~~~~dlk~Lak~LKk~c----------acG-   69 (104)
T COG0023           3 YSTICGRIGLPKELT--CEEVAKEGDQIVRIRRETRRKGKTVTIIEGLDLKDIDLKKLAKELKKKC----------ACG-   69 (104)
T ss_pred             ccccCCCCCCchHHh--hhhcccccCCeEEEEEEeecCCcEEEEEeCcccchhhHHHHHHHHHHHc----------CCC-
Confidence            456666677888765  2234566 8999999999999999999999996 999999999999999          999 


Q ss_pred             CCccceeeeecceEEeCchhhccCCCeEEEeecCCcccccchhhhhhcc
Q psy14758         83 QKVGTYKIFATETLVTSSELKLSLGNLFQASCLGVNRAGMLLKCFLCDK  131 (134)
Q Consensus        83 ~~~~~~~~~a~gt~~~~~~~~~~~~~~iq~~~qG~~r~~~~~~~~l~~~  131 (134)
                                 ||++         ++.||+  |||||..|  ++||.++
T Consensus        70 -----------Gtvk---------~~~Iei--QGdhr~~v--~~~L~~~   94 (104)
T COG0023          70 -----------GTVK---------DGEIEI--QGDHRDKV--KELLIKK   94 (104)
T ss_pred             -----------ceec---------CCEEEE--eChHHHHH--HHHHHHc
Confidence                       9999         459999  99999999  9999875

>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation

Probab=99.79  E-value=1.9e-19  Score=125.38  Aligned_cols=67  Identities=46%  Similarity=0.603  Sum_probs=61.7

Q ss_pred             eEEEEEeeeeCceeEEEEecCCC-CcCHHHHHHHHHhhccccccccccccCCCCCccceeeeecceEEeCchhhccCCCe
Q psy14758         31 LVHIRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKKRFSTFYLSALSKCDPQKVGTYKIFATETLVTSSELKLSLGNL  109 (134)
Q Consensus        31 ~IHIRiqQRngRK~VTtVEGL~~-~~DLKKL~K~LKKkf~~~~~~~~~~~c~~~~~~~~~~~a~gt~~~~~~~~~~~~~~  109 (134)
                      .||||+++|++||.||+|+||+. ..|+++++|.||++|          |||            ||++.         +.
T Consensus         1 ~V~I~~e~R~~~K~VT~I~Gl~~~~~dlk~l~k~lKk~~----------~cg------------gtv~~---------~~   49 (77)
T cd00474           1 VVRIRIQQRNGGKTVTTVQGLDLEYADLKKLAKELKKKC----------ACG------------GTVKD---------EV   49 (77)
T ss_pred             CEEEEEEECCCCccEEEEECCCCchHhHHHHHHHHHHHc----------CCC------------cEEec---------CE
Confidence            48999999999999999999987 559999999999999          999            99993         68


Q ss_pred             EEEeecCCcccccchhhhhhccc
Q psy14758        110 FQASCLGVNRAGMLLKCFLCDKR  132 (134)
Q Consensus       110 iq~~~qG~~r~~~~~~~~l~~~~  132 (134)
                      |++  |||||+.+  ++||.++.
T Consensus        50 I~l--QGD~r~~v--~~~L~~~g   68 (77)
T cd00474          50 IEL--QGDQRKKI--KEFLIKMG   68 (77)
T ss_pred             EEE--eCcHHHHH--HHHHHHcC
Confidence            999  99999999  99998763

This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.

>PRK00939 translation initiation factor Sui1; Reviewed

Probab=99.75  E-value=2.7e-18  Score=124.78  Aligned_cols=71  Identities=23%  Similarity=0.394  Sum_probs=64.9

Q ss_pred             CCCCCeEEEEEeeeeCceeEEEEecCC-CCcCHHHHHHHHHhhccccccccccccCCCCCccceeeeecceEEeCchhhc
Q psy14758         26 DVQDGLVHIRIQQRNGRKTLTTVQGLS-SEYDLKKIVRACKKKRFSTFYLSALSKCDPQKVGTYKIFATETLVTSSELKL  104 (134)
Q Consensus        26 ~~eqq~IHIRiqQRngRK~VTtVEGL~-~~~DLKKL~K~LKKkf~~~~~~~~~~~c~~~~~~~~~~~a~gt~~~~~~~~~  104 (134)
                      ..+++.|||++++||+||.||+|+||+ .++|+++++|.||++|          +||            ||++       
T Consensus        20 ~~~~~~i~I~~ekr~~gK~VTiI~Gl~~~~~~lk~l~k~lKk~~----------gcG------------gsvk-------   70 (99)
T PRK00939         20 AKEQQRIKIKVDKRRYGKEVTIIEGIDPKDIDLKELAKKLKSKL----------ACG------------GTVK-------   70 (99)
T ss_pred             CccCceEEEEEEecCCCceEEEEeCCCCcchhHHHHHHHHHHHh----------CCC------------ceEE-------
Confidence            345799999999999999999999998 5999999999999999          999            9997       


Q ss_pred             cCCCeEEEeecCCcccccchhhhhhcc
Q psy14758        105 SLGNLFQASCLGVNRAGMLLKCFLCDK  131 (134)
Q Consensus       105 ~~~~~iq~~~qG~~r~~~~~~~~l~~~  131 (134)
                        ++.|++  |||||+.+  ++||.++
T Consensus        71 --~~~I~i--QGD~r~~v--~~~L~~~   91 (99)
T PRK00939         71 --DGRIEL--QGDHRERV--KELLIKM   91 (99)
T ss_pred             --CCEEEE--eCcHHHHH--HHHHHHc
Confidence              356999  99999999  9999864

>PRK06824 translation initiation factor Sui1; Validated

Probab=99.75  E-value=2.1e-18  Score=129.57  Aligned_cols=70  Identities=24%  Similarity=0.391  Sum_probs=63.7

Q ss_pred             CCCCeEEEEEeee-eCceeEEEEecCC-CCcCHHHHHHHHHhhccccccccccccCCCCCccceeeeecceEEeCchhhc
Q psy14758         27 VQDGLVHIRIQQR-NGRKTLTTVQGLS-SEYDLKKIVRACKKKRFSTFYLSALSKCDPQKVGTYKIFATETLVTSSELKL  104 (134)
Q Consensus        27 ~eqq~IHIRiqQR-ngRK~VTtVEGL~-~~~DLKKL~K~LKKkf~~~~~~~~~~~c~~~~~~~~~~~a~gt~~~~~~~~~  104 (134)
                      .+++.||||++++ |+||.||+|+||+ ++.|+++|+|.||++|          +||            ||++       
T Consensus        38 ~~~~~vri~~~~kgr~gK~VTvI~Gl~~~~~dlk~l~K~LKkk~----------gcG------------Gtvk-------   88 (118)
T PRK06824         38 AGDGIVRVRRETKGRGGKTVTVITGVPLAEDALKELAKELKRRC----------GTG------------GTLK-------   88 (118)
T ss_pred             CcCceEEEEEEEccCCCceEEEEeCCcCCHHHHHHHHHHHHHHh----------cCC------------ceEe-------
Confidence            3467999988866 8999999999998 6999999999999999          999            9998       


Q ss_pred             cCCCeEEEeecCCcccccchhhhhhcc
Q psy14758        105 SLGNLFQASCLGVNRAGMLLKCFLCDK  131 (134)
Q Consensus       105 ~~~~~iq~~~qG~~r~~~~~~~~l~~~  131 (134)
                        ++.|++  |||||+++  ++||.+.
T Consensus        89 --d~~Iei--QGD~r~~v--~~~L~~~  109 (118)
T PRK06824         89 --DGVIEI--QGDHVELL--LAELLKR  109 (118)
T ss_pred             --cCEEEE--cCcHHHHH--HHHHHHC
Confidence              468999  99999999  9999865

>PRK09019 translation initiation factor Sui1; Validated

Probab=99.74  E-value=3.7e-18  Score=126.66  Aligned_cols=72  Identities=28%  Similarity=0.397  Sum_probs=60.8

Q ss_pred             CCCCCCeEEEEEee-eeCceeEEEEecCC-CCcCHHHHHHHHHhhccccccccccccCCCCCccceeeeecceEEeCchh
Q psy14758         25 DDVQDGLVHIRIQQ-RNGRKTLTTVQGLS-SEYDLKKIVRACKKKRFSTFYLSALSKCDPQKVGTYKIFATETLVTSSEL  102 (134)
Q Consensus        25 ~~~eqq~IHIRiqQ-RngRK~VTtVEGL~-~~~DLKKL~K~LKKkf~~~~~~~~~~~c~~~~~~~~~~~a~gt~~~~~~~  102 (134)
                      ..++.+.|.|+.+. +|++|+||+|+||+ ++.|+++|+|.||++|          +||            ||++     
T Consensus        26 ~~~~~~~vri~~~r~gRkGK~VTiI~Gl~~~~~dlk~l~K~lKkk~----------gcG------------Gtvk-----   78 (108)
T PRK09019         26 RPKGDGIVRIQRQTSGRKGKGVCLITGLDLDDAELKKLAAELKKKC----------GCG------------GAVK-----   78 (108)
T ss_pred             CCCcCceEEEEEecCCCCCCeEEEEeCCcCCHHHHHHHHHHHHHHh----------cCC------------CeEE-----
Confidence            34456666666553 35678999999998 6999999999999999          999            9999     


Q ss_pred             hccCCCeEEEeecCCcccccchhhhhhcc
Q psy14758        103 KLSLGNLFQASCLGVNRAGMLLKCFLCDK  131 (134)
Q Consensus       103 ~~~~~~~iq~~~qG~~r~~~~~~~~l~~~  131 (134)
                          ++.||+  |||||+++  ++||.+.
T Consensus        79 ----~~~Iel--QGD~r~~v--~~~L~~~   99 (108)
T PRK09019         79 ----DGVIEI--QGDKRDLL--KSLLEAK   99 (108)
T ss_pred             ----cCEEEE--cCcHHHHH--HHHHHHC
Confidence                468999  99999999  9999865

>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic

Probab=99.74  E-value=6.8e-18  Score=122.63  Aligned_cols=71  Identities=28%  Similarity=0.429  Sum_probs=65.7

Q ss_pred             CCCCCeEEEEEeee-eCceeEEEEecCCC-CcCHHHHHHHHHhhccccccccccccCCCCCccceeeeecceEEeCchhh
Q psy14758         26 DVQDGLVHIRIQQR-NGRKTLTTVQGLSS-EYDLKKIVRACKKKRFSTFYLSALSKCDPQKVGTYKIFATETLVTSSELK  103 (134)
Q Consensus        26 ~~eqq~IHIRiqQR-ngRK~VTtVEGL~~-~~DLKKL~K~LKKkf~~~~~~~~~~~c~~~~~~~~~~~a~gt~~~~~~~~  103 (134)
                      .++++.|+|++++| |++|.||+|+||+. ..|+++++|.||++|          ||+            ||++      
T Consensus        20 ~~~~~~i~i~~e~rgr~gK~VTvV~Gl~~~~~~l~~l~k~LKk~~----------gcG------------gtvk------   71 (101)
T TIGR01158        20 PKEDQVVRIQRETRGRKGKGVTIIEGLDLSDIDLKELAKELKSKC----------GCG------------GTVK------   71 (101)
T ss_pred             CCCCceEEEEEEEecCCCCEEEEEeCCcCchhhHHHHHHHHHHHh----------cCC------------eeEe------
Confidence            45789999999999 99999999999984 899999999999999          999            9997      


Q ss_pred             ccCCCeEEEeecCCcccccchhhhhhcc
Q psy14758        104 LSLGNLFQASCLGVNRAGMLLKCFLCDK  131 (134)
Q Consensus       104 ~~~~~~iq~~~qG~~r~~~~~~~~l~~~  131 (134)
                         ++.|++  |||||+.+  ++||.++
T Consensus        72 ---~~~Iei--QGD~~~~v--~~~L~~~   92 (101)
T TIGR01158        72 ---DGVIEI--QGDHRDRV--KDLLEKK   92 (101)
T ss_pred             ---CCEEEE--eCcHHHHH--HHHHHHc
Confidence               468999  99999999  9999875

This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.

>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation []

Probab=99.74  E-value=6e-18  Score=117.04  Aligned_cols=74  Identities=34%  Similarity=0.527  Sum_probs=62.0

Q ss_pred             CCCeEEEEEeeeeCceeEEEEecCC-CCcCHHHHHHHHHhhccccccccccccCCCCCccceeeeecceEEeCchhhccC
Q psy14758         28 QDGLVHIRIQQRNGRKTLTTVQGLS-SEYDLKKIVRACKKKRFSTFYLSALSKCDPQKVGTYKIFATETLVTSSELKLSL  106 (134)
Q Consensus        28 eqq~IHIRiqQRngRK~VTtVEGL~-~~~DLKKL~K~LKKkf~~~~~~~~~~~c~~~~~~~~~~~a~gt~~~~~~~~~~~  106 (134)
                      +.+.|||++++|+|||.||+|+||+ ..+|+++++|.||++|          ||+            ||+..++.    .
T Consensus         3 ~~~~I~I~~e~r~~~K~vT~V~gl~~~~~d~~~lak~lkk~~----------ac~------------~sv~~~~~----k   56 (83)
T PF01253_consen    3 EPPKIHIRVEKRRGRKFVTIVSGLELFGIDLKELAKELKKKF----------ACG------------GSVTKDPG----K   56 (83)
T ss_dssp             -TTCEEEEEEESSSSEEEEEEES--STTSHHHHHHHHHHHHH----------TS-------------EEEEE-TT----T
T ss_pred             CCCEEEEEEEeCcCCeEEEEEECCcccccCHHHHHHHHHHhc----------cCc------------eEEeecCC----C
Confidence            5689999999999999999999999 5999999999999999          999            99987642    2


Q ss_pred             CCeEEEeecCCcccccchhhhhhcc
Q psy14758        107 GNLFQASCLGVNRAGMLLKCFLCDK  131 (134)
Q Consensus       107 ~~~iq~~~qG~~r~~~~~~~~l~~~  131 (134)
                      +..|++  ||||+..+  .+||.++
T Consensus        57 ~~~I~i--QGd~~~~i--~~~L~~~   77 (83)
T PF01253_consen   57 GEEIQI--QGDHRDEI--KDLLVEK   77 (83)
T ss_dssp             SSEEEE--ESS-HHHH--HHHHHHH
T ss_pred             CCEEEE--CCcHHHHH--HHHHHHh
Confidence            788999  99999999  9999764

SUI1 is a protein of 108 residues. Close homologs of SUI1 have been found [] in mammals, insects and plants. SUI1 is also evolutionary related to hypothetical proteins from Escherichia coli (yciH), Haemophilus influenzae (HI1225) and Methanococcus vannielii.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2OGH_A 1D1R_A 2IF1_A 2XZN_F 2XZM_F.

>PRK07451 translation initiation factor Sui1; Validated

Probab=99.73  E-value=9.6e-18  Score=125.60  Aligned_cols=72  Identities=18%  Similarity=0.202  Sum_probs=60.8

Q ss_pred             CCCCCCeEEEEEee-eeCceeEEEEecCCC-CcCHHHHHHHHHhhccccccccccccCCCCCccceeeeecceEEeCchh
Q psy14758         25 DDVQDGLVHIRIQQ-RNGRKTLTTVQGLSS-EYDLKKIVRACKKKRFSTFYLSALSKCDPQKVGTYKIFATETLVTSSEL  102 (134)
Q Consensus        25 ~~~eqq~IHIRiqQ-RngRK~VTtVEGL~~-~~DLKKL~K~LKKkf~~~~~~~~~~~c~~~~~~~~~~~a~gt~~~~~~~  102 (134)
                      +.++++.|.|+++. +|++|.||+|+||+. ++|+++|+|.||++|          +||            ||++     
T Consensus        33 ~~~~~~~irI~~~r~gR~GK~VTvV~Gl~~~~~dlk~LaK~LK~k~----------gcG------------Gtvk-----   85 (115)
T PRK07451         33 LPPQQQNLRVQATRSGRKGKTVTVITGFQHKPETLAKLLKQLKTQC----------GSG------------GTVK-----   85 (115)
T ss_pred             CCccceeEEEEEEecCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh----------cCC------------ceEc-----
Confidence            44556666666543 557799999999985 799999999999999          999            9998     


Q ss_pred             hccCCCeEEEeecCCcccccchhhhhhcc
Q psy14758        103 KLSLGNLFQASCLGVNRAGMLLKCFLCDK  131 (134)
Q Consensus       103 ~~~~~~~iq~~~qG~~r~~~~~~~~l~~~  131 (134)
                          ++.|++  |||||+++  ++||.+.
T Consensus        86 ----d~~Iel--QGD~r~~v--~~~L~~~  106 (115)
T PRK07451         86 ----DNTIEI--QGDHRQKI--LEILIKL  106 (115)
T ss_pred             ----CCEEEE--cCcHHHHH--HHHHHHC
Confidence                457999  99999999  9999865

>TIGR01159 DRP1 density-regulated protein DRP1

Probab=99.67  E-value=8.4e-17  Score=127.09  Aligned_cols=74  Identities=22%  Similarity=0.251  Sum_probs=66.7

Q ss_pred             CCCeEEEEEeeeeCceeEEEEecCCC-CcCHHHHHHHHHhhccccccccccccCCCCCccceeeeecceEEeCchhhccC
Q psy14758         28 QDGLVHIRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKKRFSTFYLSALSKCDPQKVGTYKIFATETLVTSSELKLSL  106 (134)
Q Consensus        28 eqq~IHIRiqQRngRK~VTtVEGL~~-~~DLKKL~K~LKKkf~~~~~~~~~~~c~~~~~~~~~~~a~gt~~~~~~~~~~~  106 (134)
                      ..+.|+|++++|++||.||+|+||+. ++|+++++|.||++|          |||            +||+.++.    .
T Consensus        87 ~~~~V~I~~~~R~krK~VT~V~GLe~f~idlk~laK~lkkkf----------acG------------~SV~k~~~----~  140 (173)
T TIGR01159        87 LPQKVTIKREPRTKRKFVTVIKGLETFDIDLKKASKTFAQKF----------ATG------------CSVSKSVT----G  140 (173)
T ss_pred             CCCeEEEEEEecCCCceEEEEeCCcCCCcCHHHHHHHHHHHh----------CCC------------CccccCCC----C
Confidence            35899999999999999999999997 999999999999999          999            88875544    2


Q ss_pred             CCeEEEeecCCcccccchhhhhhcc
Q psy14758        107 GNLFQASCLGVNRAGMLLKCFLCDK  131 (134)
Q Consensus       107 ~~~iq~~~qG~~r~~~~~~~~l~~~  131 (134)
                      ++.|++  |||||..+  .+||.++
T Consensus       141 ~~eI~I--QGD~~~~v--~e~L~~~  161 (173)
T TIGR01159       141 KEEIVI--QGDVMDDI--EDYIHEK  161 (173)
T ss_pred             CCEEEe--cCCHHHHH--HHHHHHH
Confidence            689999  99999999  8999875

This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.

>KOG3239|consensus

Probab=98.65  E-value=4.1e-08  Score=79.55  Aligned_cols=72  Identities=25%  Similarity=0.326  Sum_probs=60.4

Q ss_pred             CeEEEEEeeeeCceeEEEEecCCC-CcCHHHHHHHHHhhccccccccccccCCCCCccceeeeecceEEeCchhhccCCC
Q psy14758         30 GLVHIRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKKRFSTFYLSALSKCDPQKVGTYKIFATETLVTSSELKLSLGN  108 (134)
Q Consensus        30 q~IHIRiqQRngRK~VTtVEGL~~-~~DLKKL~K~LKKkf~~~~~~~~~~~c~~~~~~~~~~~a~gt~~~~~~~~~~~~~  108 (134)
                      |+|.|...-|+.||.||+|.||.- +||+|+.+|.|-++|          |||            -+|..+++    ..+
T Consensus       101 qkV~I~r~~R~KrK~VT~V~GL~~FdIdlk~aaK~fa~KF----------AtG------------aSVtk~a~----kkd  154 (193)
T KOG3239|consen  101 QKVIIKREARTKRKSVTVVKGLETFDIDLKKAAKFFAQKF----------ATG------------ASVTKNAE----KKD  154 (193)
T ss_pred             ceeEeeecccCCceeEEEEechhhccccHHHHHHHHHHhh----------ccC------------ccccCCCC----ccc
Confidence            789999999999999999999997 999999999999999          777            33433333    257


Q ss_pred             eEEEeecCCcccccchhhhhhcc
Q psy14758        109 LFQASCLGVNRAGMLLKCFLCDK  131 (134)
Q Consensus       109 ~iq~~~qG~~r~~~~~~~~l~~~  131 (134)
                      .|-+  |||-...+  .+|+.++
T Consensus       155 EIvI--QGDv~dDi--~d~I~ek  173 (193)
T KOG3239|consen  155 EIVI--QGDVKDDI--FDFIPEK  173 (193)
T ss_pred             eEEE--eccchHHH--HHHHHHh
Confidence            8889  99999988  7877654

>KOG2522|consensus

Probab=96.34  E-value=0.0052  Score=56.43  Aligned_cols=88  Identities=22%  Similarity=0.253  Sum_probs=64.4

Q ss_pred             CCcccccCCCCCC----CCCCCeEEEEEeeeeCceeEEEEecCCC-CcCHHHHHHHHHhhccccccccccccCCCCCccc
Q psy14758         13 LDPFADAFKGSED----DVQDGLVHIRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKKRFSTFYLSALSKCDPQKVGT   87 (134)
Q Consensus        13 fDPFada~~~dd~----~~eqq~IHIRiqQRngRK~VTtVEGL~~-~~DLKKL~K~LKKkf~~~~~~~~~~~c~~~~~~~   87 (134)
                      +-||-.....|+.    ...--.|.|.+++|-|+|.||.|.||.- .+|...++..|.+.|          +|.      
T Consensus       446 mtp~yqi~~pdgepivkKgs~ppi~i~te~RagnKkVT~V~nle~fgiDp~S~aa~Lqk~c----------~aS------  509 (560)
T KOG2522|consen  446 MTPFYQIFKPDGEPIVKKGSLPPIKIITEMRAGNKKVTRVSNLEVFGIDPESLAADLQKIC----------SAS------  509 (560)
T ss_pred             CCcceEEEcCCCceeeecCCCCceEEeehhhccCceEEEEccceeeccCHHHHHHHHHHHe----------eee------
Confidence            4555555444433    2234679999999999999999999997 999999999999999          666      


Q ss_pred             eeeeecceEEeCchhhccCCCeEEEeecCCcccccchhhhhh
Q psy14758         88 YKIFATETLVTSSELKLSLGNLFQASCLGVNRAGMLLKCFLC  129 (134)
Q Consensus        88 ~~~~a~gt~~~~~~~~~~~~~~iq~~~qG~~r~~~~~~~~l~  129 (134)
                            -|+-..+--   -|-.+|+  ||.|-.-+  .++|.
T Consensus       510 ------Ttv~e~pg~---kg~eVqv--QGnqih~i--adlL~  538 (560)
T KOG2522|consen  510 ------TTVSESPGF---KGAEVQV--QGNQIHSI--ADLLN  538 (560)
T ss_pred             ------eecccCCCC---CCceEEE--ecchhhHH--HHHHH
Confidence                  444433332   3677888  99987665  55544

>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=93.48  E-value=0.37  Score=34.07  Aligned_cols=73  Identities=18%  Similarity=0.269  Sum_probs=47.7

Q ss_pred             CeEEEEEeeee-CceeEEEEecCCCCcCHHHHHHHHHhhccccccccccccCCCCCccceeeeecceEEeCchhhccCCC
Q psy14758         30 GLVHIRIQQRN-GRKTLTTVQGLSSEYDLKKIVRACKKKRFSTFYLSALSKCDPQKVGTYKIFATETLVTSSELKLSLGN  108 (134)
Q Consensus        30 q~IHIRiqQRn-gRK~VTtVEGL~~~~DLKKL~K~LKKkf~~~~~~~~~~~c~~~~~~~~~~~a~gt~~~~~~~~~~~~~  108 (134)
                      ..+=|...-++ |.+.+|+|.-+..|  +..|.++|++-|.         -..    +  +-+  .+-+.  +    ..+
T Consensus        12 ~~LPVY~~~k~~g~~~~T~IrkI~GD--~~aL~~dL~~~l~---------~~~----~--~~~--~~~V~--~----~~g   66 (87)
T PF05046_consen   12 GNLPVYLDIKNGGNRKITVIRKIEGD--IWALKKDLRKFLG---------EKP----K--KKI--DVRVN--E----LTG   66 (87)
T ss_pred             CcccEEEEEeCCCcEeEEEEEeecCC--HHHHHHHHHHHhh---------hhc----C--CCc--ceEEe--e----cCC
Confidence            44556666666 67899999999874  5667777777660         000    0  000  11221  1    367


Q ss_pred             eEEEeecCCcccccchhhhhhcc
Q psy14758        109 LFQASCLGVNRAGMLLKCFLCDK  131 (134)
Q Consensus       109 ~iq~~~qG~~r~~~~~~~~l~~~  131 (134)
                      .|++  .|||...+  +.||.++
T Consensus        67 ~i~I--kG~~~~~V--k~wL~~~   85 (87)
T PF05046_consen   67 HIEI--KGDHVEEV--KKWLLEK   85 (87)
T ss_pred             EEEE--cCccHHHH--HHHHHHC
Confidence            8999  99999999  9999875

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	134
2ogh_A	108	Solution Structure Of Yeast Eif1 Length = 108		6e-13
2if1_A	126	Human Translation Initiation Factor Eif1, Nmr, 29 S		3e-10
2xzm_F	101	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-06

>pdb|2OGH|A Chain A, Solution Structure Of Yeast Eif1 Length = 108

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 8  SDLFMLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKK 66
           +L   DPFAD   G ++      +HIRIQQRNGRKTLTTVQG+  EYDLK+I++  KK
Sbjct: 4  ENLKSFDPFADT--GDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKK 60

>pdb|2IF1|A Chain A, Human Translation Initiation Factor Eif1, Nmr, 29 Structures Length = 126

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 38/52 (73%), Gaps = 6/52 (11%)
Query: 9  DLFMLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYD 56
          +L   DPFADA KG  DD+     +  +HIRIQQRNGRKTLTTVQG++ +YD
Sbjct: 19 NLHSFDPFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYD 68

>pdb|2XZM|F Chain F, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 101

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 20 FKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKK 66
          F+ + DD Q   +HIR++QR GRK  TTV+G+  E+D +KI++  KK
Sbjct: 8  FENNIDDFQ-THIHIRVEQRRGRKCFTTVEGIPPEFDYEKIMKYWKK 53

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	134
2ogh_A	108	Eukaryotic translation initiation factor EIF-1; al	2e-18
2if1_A	126	EIF1, SUI1; translation initiation factor; NMR {Ho	5e-16
2xzm_F	101	EIF1; ribosome, translation; 3.93A {Tetrahymena th	4e-15
1d1r_A	116	Hypothetical 11.4 KD protein YCIH in PYRF-OSMB int	7e-05

>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae} Length = 108

 Score = 73.7 bits (181), Expect = 2e-18
 Identities = 33/59 (55%), Positives = 41/59 (69%), Gaps = 2/59 (3%)

Query: 9  DLFMLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
          +L   DPFAD   G ++      +HIRIQQRNGRKTLTTVQG+  EYDLK+I++  KK 
Sbjct: 5  NLKSFDPFADT--GDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKD 61

>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1 Length = 126

 Score = 68.0 bits (166), Expect = 5e-16
 Identities = 36/60 (60%), Positives = 44/60 (73%), Gaps = 2/60 (3%)

Query: 10 LFMLDPFADAFKGSEDDV--QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
          L   DPFADA KG +      +  +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KKK
Sbjct: 20 LHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKK 79

>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F Length = 101

 Score = 65.3 bits (159), Expect = 4e-15
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query: 18 DAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
          D    +  D     +HIR++QR GRK  TTV+G+  E+D +KI++  KK 
Sbjct: 5  DFQFENNIDDFQTHIHIRVEQRRGRKCFTTVEGIPPEFDYEKIMKYWKKW 54

>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1 Length = 116

 Score = 38.6 bits (90), Expect = 7e-05
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 5  VWSSDLFMLDPFADAFKGSEDDVQDGLVHIRIQ-QRNGRKTLTTVQGLS-SEYDLKKIVR 62
          V+S++   +D    A         DG+V I+ Q      K +  + G+   + +L K+  
Sbjct: 9  VYSTETGRIDEPKAAP---VRPKGDGVVRIQRQTSGRKGKGVCLITGVDLDDAELTKLAA 65

Query: 63 ACKKK 67
            KKK
Sbjct: 66 ELKKK 70

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	134
2ogh_A	108	Eukaryotic translation initiation factor EIF-1; al	99.97
2if1_A	126	EIF1, SUI1; translation initiation factor; NMR {Ho	99.97
2xzm_F	101	EIF1; ribosome, translation; 3.93A {Tetrahymena th	99.89
1d1r_A	116	Hypothetical 11.4 KD protein YCIH in PYRF-OSMB int	99.78

>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.8e-32  Score=198.53  Aligned_cols=95  Identities=44%  Similarity=0.733  Sum_probs=87.4

Q ss_pred             ccccCCCCCCcccccCCCCCCCCCCCeEEEEEeeeeCceeEEEEecCCCCcCHHHHHHHHHhhccccccccccccCCCCC
Q psy14758          5 VWSSDLFMLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKKRFSTFYLSALSKCDPQK   84 (134)
Q Consensus         5 ~si~NL~sfDPFada~~~dd~~~eqq~IHIRiqQRngRK~VTtVEGL~~~~DLKKL~K~LKKkf~~~~~~~~~~~c~~~~   84 (134)
                      |||+||++|||||++  +|+...+.++||||+++|||||+||+|+||+.++|+++|+|+||++|          ||+   
T Consensus         1 m~~~~~~~~dpf~~~--~~~~~~~~~~V~Ir~~~R~g~K~VT~V~Gl~~~~dlk~lak~lKkk~----------acg---   65 (108)
T 2ogh_A            1 MSIENLKSFDPFADT--GDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDF----------ACN---   65 (108)
T ss_dssp             CCSSCCSCCCCCCCC--CCCCCCCSCSEEEEEECCSSSCCEEEEECCCTTSCHHHHHHHHHHHH----------CCC---
T ss_pred             CcccccCCCCccccc--cccccCCCCeEEEEEEEccCCceEEEEeCCCcchhHHHHHHHHHHHh----------cCc---
Confidence            789999999999998  44456788999999999999999999999999999999999999999          999   


Q ss_pred             ccceeeeecceEEeCchhhccCCCeEEEeecCCcccccchhhhhhcc
Q psy14758         85 VGTYKIFATETLVTSSELKLSLGNLFQASCLGVNRAGMLLKCFLCDK  131 (134)
Q Consensus        85 ~~~~~~~a~gt~~~~~~~~~~~~~~iq~~~qG~~r~~~~~~~~l~~~  131 (134)
                               ||++.+++    .|..||+  |||||..+  .+||.++
T Consensus        66 ---------gsV~~~~~----~g~~I~i--QGD~r~~v--~~~L~~~   95 (108)
T 2ogh_A           66 ---------GNIVKDPE----MGEIIQL--QGDQRAKV--CEFMISQ   95 (108)
T ss_dssp             ---------EEEECCTT----SSCEEEE--ESSCHHHH--HHHHHHH
T ss_pred             ---------eEEecCCC----CceEEEE--cCCHHHHH--HHHHHHc
Confidence                     99998766    3789999  99999999  9999865

>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1

Probab=99.97  E-value=6e-32  Score=202.66  Aligned_cols=97  Identities=46%  Similarity=0.705  Sum_probs=88.6

Q ss_pred             ccccCCCCCCcccccCCCCC--CCCCCCeEEEEEeeeeCceeEEEEecCCCCcCHHHHHHHHHhhccccccccccccCCC
Q psy14758          5 VWSSDLFMLDPFADAFKGSE--DDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKKRFSTFYLSALSKCDP   82 (134)
Q Consensus         5 ~si~NL~sfDPFada~~~dd--~~~eqq~IHIRiqQRngRK~VTtVEGL~~~~DLKKL~K~LKKkf~~~~~~~~~~~c~~   82 (134)
                      |+|+||.+|||||++.++|+  ...+.++||||+++|||||+||+|+||+.++|+|+|+|+||++|          ||| 
T Consensus        15 ~~~~~~~~fdpfa~~~~~~~~~~~g~~~~V~Ir~~~R~grK~VT~V~GL~~~~dlk~laK~LKkk~----------acg-   83 (126)
T 2if1_A           15 SAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKF----------ACN-   83 (126)
T ss_dssp             GGCSCCCCCCTTSSCCCCSSCCSCSCTTCEECCCCCSSSSCCBCEEBSCCTTSCHHHHHTTHHHHT----------CCC-
T ss_pred             hhcccCCCCCchhhhccccccccCCCCCeEEEEEEeecCCccEEEEeCCCCchhHHHHHHHHHHHh----------cCC-
Confidence            56999999999999977663  35778999999999999999999999999999999999999999          999 


Q ss_pred             CCccceeeeecceEEeCchhhccCCCeEEEeecCCcccccchhhhhhcc
Q psy14758         83 QKVGTYKIFATETLVTSSELKLSLGNLFQASCLGVNRAGMLLKCFLCDK  131 (134)
Q Consensus        83 ~~~~~~~~~a~gt~~~~~~~~~~~~~~iq~~~qG~~r~~~~~~~~l~~~  131 (134)
                                 |||+..++    +|+.||+  |||||..+  ++||.++
T Consensus        84 -----------GtVk~~~e----~g~~I~I--QGD~r~~I--~~~L~~~  113 (126)
T 2if1_A           84 -----------GTVIEHPE----YGEVIQL--QGDQRKNI--CQFLVEI  113 (126)
T ss_dssp             -----------EEEECCTT----TSSEEEE--SBCCHHHH--HHHHHHH
T ss_pred             -----------eEEecCCC----CccEEEE--cCCHHHHH--HHHHHHc
Confidence                       99998766    4789999  99999999  9999875

>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F

Probab=99.89  E-value=2e-23  Score=150.93  Aligned_cols=74  Identities=35%  Similarity=0.597  Sum_probs=69.7

Q ss_pred             CCCeEEEEEeeeeCceeEEEEecCCCCcCHHHHHHHHHhhccccccccccccCCCCCccceeeeecceEEeCchhhccCC
Q psy14758         28 QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKKRFSTFYLSALSKCDPQKVGTYKIFATETLVTSSELKLSLG  107 (134)
Q Consensus        28 eqq~IHIRiqQRngRK~VTtVEGL~~~~DLKKL~K~LKKkf~~~~~~~~~~~c~~~~~~~~~~~a~gt~~~~~~~~~~~~  107 (134)
                      .+++||||+++|||||.||+|+||+.++|+|+|+|+||++|          |||            |||+.+++    +|
T Consensus        15 ~~~~v~I~~~~R~g~K~VT~V~Gl~~~~dlk~laK~lKkk~----------acg------------gsV~~~~~----~g   68 (101)
T 2xzm_F           15 FQTHIHIRVEQRRGRKCFTTVEGIPPEFDYEKIMKYWKKWL----------SCN------------ATIVEEDE----GK   68 (101)
T ss_dssp             CSCCEEEEEEEEETTEEEEEEECCCTTSCTHHHHHHHHHHH----------TSC------------CCEEECST----TC
T ss_pred             CCCeEEEEEEeccCCccEEEEecCCCchhHHHHHHHHHHHh----------cCC------------eEEecCCC----Cc
Confidence            57899999999999999999999999999999999999999          999            99998876    47


Q ss_pred             CeEEEeecCCcccccchhhhhhcc
Q psy14758        108 NLFQASCLGVNRAGMLLKCFLCDK  131 (134)
Q Consensus       108 ~~iq~~~qG~~r~~~~~~~~l~~~  131 (134)
                      ..||+  |||||..+  .+||.++
T Consensus        69 ~~I~i--QGD~r~~v--~~~L~~~   88 (101)
T 2xzm_F           69 KVIKL--NGDHRNQI--QQFLSEE   88 (101)
T ss_dssp             EEEEE--ESCCHHHH--HHHHHHH
T ss_pred             eEEEE--eCcHHHHH--HHHHHHc
Confidence            89999  99999999  9999875

>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1

Probab=99.78  E-value=9.1e-20  Score=135.14  Aligned_cols=71  Identities=28%  Similarity=0.430  Sum_probs=63.7

Q ss_pred             CCCCCCeEEEEEeeeeCc--eeEEEEecCCC-CcCHHHHHHHHHhhccccccccccccCCCCCccceeeeecceEEeCch
Q psy14758         25 DDVQDGLVHIRIQQRNGR--KTLTTVQGLSS-EYDLKKIVRACKKKRFSTFYLSALSKCDPQKVGTYKIFATETLVTSSE  101 (134)
Q Consensus        25 ~~~eqq~IHIRiqQRngR--K~VTtVEGL~~-~~DLKKL~K~LKKkf~~~~~~~~~~~c~~~~~~~~~~~a~gt~~~~~~  101 (134)
                      ..+++++||||++ |+||  |.||+|+||+. ++|+++|+|+||++|          |||            |||+    
T Consensus        26 ~p~~~~~V~I~~e-r~gR~GK~VT~V~Gl~~~~~dlk~laK~LKkk~----------acg------------GtVk----   78 (116)
T 1d1r_A           26 RPKGDGVVRIQRQ-TSGRKGKGVCLITGVDLDDAELTKLAAELKKKC----------GCG------------GAVK----   78 (116)
T ss_dssp             --CCCCEEEEEEC-CCSSSSCCCEEEECCCSCHHHHHHHHHHHTTSS----------SSC------------CBCC----
T ss_pred             CCCCCCeEEEEEE-eCCCCCCeEEEEeCCcCchhhHHHHHHHHHHHh----------cCC------------cEEc----
Confidence            4566899999999 8777  99999999997 999999999999999          999            9998    


Q ss_pred             hhccCCCeEEEeecCCcccccchhhhhhcc
Q psy14758        102 LKLSLGNLFQASCLGVNRAGMLLKCFLCDK  131 (134)
Q Consensus       102 ~~~~~~~~iq~~~qG~~r~~~~~~~~l~~~  131 (134)
                           ++.||+  |||||..+  .+||.++
T Consensus        79 -----~~~Iei--QGD~r~~i--~~~L~~~   99 (116)
T 1d1r_A           79 -----DGVIEI--QGDKRDLL--KSLLEAK   99 (116)
T ss_dssp             -----SSCEEE--CSCCHHHH--HHHHHHH
T ss_pred             -----CCEEEE--eCcHHHHH--HHHHHHc
Confidence                 468999  99999999  9999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	134
d2if1a_	126	d.64.1.1 (A:) Eukaryotic translation initiation fa	4e-19
d1d1ra_	83	d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}	5e-06

>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: Eukaryotic translation initiation factor eIF-1 (SUI1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.3 bits (185), Expect = 4e-19
 Identities = 36/62 (58%), Positives = 45/62 (72%), Gaps = 2/62 (3%)

Query: 8  SDLFMLDPFADAFKGSED--DVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACK 65
           +L   DPFADA KG +      +  +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A K
Sbjct: 18 QNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFK 77

Query: 66 KK 67
          KK
Sbjct: 78 KK 79

>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]} Length = 83

class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: YciH
species: Escherichia coli [TaxId: 562]

 Score = 39.6 bits (93), Expect = 5e-06
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)

Query: 29 DGLVHIRIQQRNGR--KTLTTVQGLS-SEYDLKKIVRACKKK 67
          DG+V I+ Q  +GR  K +  + G+   + +L K+    KKK
Sbjct: 3  DGVVRIQRQ-TSGRKGKGVCLITGVDLDDAELTKLAAELKKK 43

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	134
d2if1a_	126	Eukaryotic translation initiation factor eIF-1 (SU	99.95
d1d1ra_	83	YciH {Escherichia coli [TaxId: 562]}	99.59

>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: Eukaryotic translation initiation factor eIF-1 (SUI1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2e-29  Score=187.18  Aligned_cols=98  Identities=46%  Similarity=0.680  Sum_probs=87.7

Q ss_pred             ccc-ccCCCCCCcccccCCCCCCC--CCCCeEEEEEeeeeCceeEEEEecCCCCcCHHHHHHHHHhhccccccccccccC
Q psy14758          4 RVW-SSDLFMLDPFADAFKGSEDD--VQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKKRFSTFYLSALSKC   80 (134)
Q Consensus         4 ~~s-i~NL~sfDPFada~~~dd~~--~eqq~IHIRiqQRngRK~VTtVEGL~~~~DLKKL~K~LKKkf~~~~~~~~~~~c   80 (134)
                      .|| ||||+++|||+|+.++++..  .+++.||||+++|+|||.||+|+||+.++|+++++|+||++|          ||
T Consensus        13 ~~s~i~nl~s~dpf~d~~~~~~~~~~~~~~~I~I~~ekR~G~K~VT~I~Gl~~~~dlk~laK~lKk~~----------ac   82 (126)
T d2if1a_          13 PMSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKF----------AC   82 (126)
T ss_dssp             GGGGCSCCCCCCTTSSCCCCSSCCSCSCTTCEECCCCCSSSSCCBCEEBSCCTTSCHHHHHTTHHHHT----------CC
T ss_pred             ccccccccccCCCccccccccccCCCCCcceEEEEEEecCCCCCeEEEECCCCcccHHHHHHHHHHhc----------CC
Confidence            466 99999999999998776654  346889999999999999999999999999999999999999          99


Q ss_pred             CCCCccceeeeecceEEeCchhhccCCCeEEEeecCCcccccchhhhhhcc
Q psy14758         81 DPQKVGTYKIFATETLVTSSELKLSLGNLFQASCLGVNRAGMLLKCFLCDK  131 (134)
Q Consensus        81 ~~~~~~~~~~~a~gt~~~~~~~~~~~~~~iq~~~qG~~r~~~~~~~~l~~~  131 (134)
                      +            |||+...+    .+..|++  |||||..+  .+||.++
T Consensus        83 g------------gSVk~~~~----~~~~I~I--QGD~r~~v--~~~L~~~  113 (126)
T d2if1a_          83 N------------GTVIEHPE----YGEVIQL--QGDQRKNI--CQFLVEI  113 (126)
T ss_dssp             C------------EEEECCTT----TSSEEEE--SBCCHHHH--HHHHHHH
T ss_pred             C------------ceEEeCCC----CCcEEEE--cccHHHHH--HHHHHHc
Confidence            9            99997654    3678999  99999999  9999875

>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: YciH
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=2.9e-16  Score=108.17  Aligned_cols=67  Identities=25%  Similarity=0.394  Sum_probs=58.1

Q ss_pred             CeEEEEEeee-eCceeEEEEecCC-CCcCHHHHHHHHHhhccccccccccccCCCCCccceeeeecceEEeCchhhccCC
Q psy14758         30 GLVHIRIQQR-NGRKTLTTVQGLS-SEYDLKKIVRACKKKRFSTFYLSALSKCDPQKVGTYKIFATETLVTSSELKLSLG  107 (134)
Q Consensus        30 q~IHIRiqQR-ngRK~VTtVEGL~-~~~DLKKL~K~LKKkf~~~~~~~~~~~c~~~~~~~~~~~a~gt~~~~~~~~~~~~  107 (134)
                      ..|+|+.+.| |++|+||+|+||+ ..+|++++++.||++|          +|+            ||++         +
T Consensus         4 ~~Vri~~e~kgR~GK~VT~I~Gl~~~~~dlk~l~k~lKk~~----------gcG------------gsvk---------~   52 (83)
T d1d1ra_           4 GVVRIQRQTSGRKGKGVCLITGVDLDDAELTKLAAELKKKC----------GCG------------GAVK---------D   52 (83)
T ss_dssp             CEEEEEECCCSSSSCCCEEEECCCSCHHHHHHHHHHHTTSS----------SSC------------CBCC---------S
T ss_pred             eEEEEEEEcCCCCCCeEEEEECCcCCHHHHHHHHHHHHHHh----------cCC------------EEEE---------C
Confidence            4677887654 3559999999998 6899999999999999          999            9997         4


Q ss_pred             CeEEEeecCCcccccchhhhhhcc
Q psy14758        108 NLFQASCLGVNRAGMLLKCFLCDK  131 (134)
Q Consensus       108 ~~iq~~~qG~~r~~~~~~~~l~~~  131 (134)
                      +.|++  |||||..+  .+||.++
T Consensus        53 ~~I~l--QGd~~~~v--~~~L~~~   72 (83)
T d1d1ra_          53 GVIEI--QGDKRDLL--KSLLEAK   72 (83)
T ss_dssp             SCEEE--CSCCHHHH--HHHHHHH
T ss_pred             CEEEE--eCcHHHHH--HHHHHHc
Confidence            67999  99999999  9999764