Psyllid ID: psy14765

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MCHKFILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVFSGGVDLAAASSPGGENIYDQKSTLTVFDTELHTDDGNY
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHcccccccccccEEcccccccEEEccccccccccccccccccEEEcccccccccccccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEcHHHHHcccccccEEEcccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccEEEEcccccccEEcccccccccccccccEEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHcccccccccccEEccccccEEEEEccccccEcccccccccEEEEcccccEEEccHHHHHHccccccEEEEEccccccEccHHHHccccccEEEEccccccEEccccccHHHHHEEEcccccccEcccHHHcccccccEEEcccccccEcccHHHHHcHccccccccccccEEccccccccccccHHHHHHHHHcccccccccccccccHHHcccccccccccccccccccccccccccEEEcccccccccccc
Coil and Loop (DISEMBL)
MCHKFILSVFLLTLLASvtqascplgcsckwkagkrtvecidrnfytipegidldtqvLDLSSNNINVLQKEIFLQMGITNIQKLYLRKcklefvddrafrgvtnmdeldlsdnllstvpsliyipylksinlahnpinqissysfqstpgiryidmsncqihtIYSEAFYVMvlpgsnltldcrvqsatpcriMWSINRKIYDhvnwnsnkinikeetvlskdnsylSVFSGGvdlaaasspggeniydqkstltvfdtelhtddgny
Flexible Loop (DISEMBL)
MCHKFILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVFSGGVDLAAASSPGgeniydqkstltvfdtelhtddgny
Low Complexity Region (SEG)
MCHKFILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVFSGGVDLAAASSPGGENIYDQKSTLTVFDTELHTDDGNY
Disordered region (IsUnstruct)
**HKFILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVFSGGVDLAA***************LTV************
Disordered Region (DISOPRED)
MCHKFILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVFSGGVDLAAASSPGGENIYDQKSTLTVFDTEL*******
Disordered Region (DISEMBL)
MCHKFILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVFSGGVDLAAASSPGGENIYDQKSTLTVFDTELHTDDGNY
Disordered Region (DISPRO)
MCHKFILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVFSGGVDLAAASSPGGENIYDQKSTLTVFDTELHT*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCHKFILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVFSGGVDLAAASSPGGENIYDQKSTLTVFDTELHTDDGNY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
Q8C031	640	Leucine-rich repeat-conta	yes	N/A	0.557	0.234	0.307	5e-17
Q9HCJ2	640	Leucine-rich repeat-conta	yes	N/A	0.557	0.234	0.307	5e-17
Q9NT99	713	Leucine-rich repeat-conta	no	N/A	0.565	0.213	0.316	1e-16
P0C192	709	Leucine-rich repeat-conta	no	N/A	0.565	0.214	0.316	2e-16
P0CC10	709	Leucine-rich repeat-conta	no	N/A	0.565	0.214	0.316	2e-16
Q9HBW1	653	Leucine-rich repeat-conta	no	N/A	0.542	0.223	0.302	3e-14
Q45R42	652	Leucine-rich repeat-conta	no	N/A	0.542	0.223	0.302	3e-14
Q99PH1	652	Leucine-rich repeat-conta	no	N/A	0.542	0.223	0.302	3e-14
Q9WVB4	1523	Slit homolog 3 protein OS	no	N/A	0.576	0.101	0.269	2e-13
Q504C1	561	Leucine-rich repeat, immu	no	N/A	0.617	0.295	0.267	2e-13

>sp|Q8C031|LRC4C_MOUSE Leucine-rich repeat-containing protein 4C OS=Mus musculus GN=Lrrc4c PE=1 SV=2

 Score = 88.6 bits (218), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 87/156 (55%), Gaps = 6/156 (3%)

Query: 18  VTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM 77
           V   +CP  CSC  +  K  V C+ +N   +P+GI  +T++L+L  N I +++   F  +
Sbjct: 42  VRAQTCPSVCSCSNQFSK--VICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHL 99

Query: 78  GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAH 135
              +++ L L +  +  ++  AF G+ N++ L+L DN L+T+P  + +Y+  LK + L +
Sbjct: 100 --RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 157

Query: 136 NPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
           NPI  I SY+F   P +R +D+   +  +  SE  +
Sbjct: 158 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 193

May promote neurite outgrowth of developing thalamic neurons.
Mus musculus (taxid: 10090)

>sp|Q9HCJ2|LRC4C_HUMAN Leucine-rich repeat-containing protein 4C OS=Homo sapiens GN=LRRC4C PE=1 SV=1

 Score = 88.6 bits (218), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 87/156 (55%), Gaps = 6/156 (3%)

Query: 18  VTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM 77
           V   +CP  CSC  +  K  V C+ +N   +P+GI  +T++L+L  N I +++   F  +
Sbjct: 42  VRAQTCPSVCSCSNQFSK--VICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHL 99

Query: 78  GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAH 135
              +++ L L +  +  ++  AF G+ N++ L+L DN L+T+P  + +Y+  LK + L +
Sbjct: 100 --RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 157

Query: 136 NPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
           NPI  I SY+F   P +R +D+   +  +  SE  +
Sbjct: 158 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 193

May promote neurite outgrowth of developing thalamic neurons.

Homo sapiens (taxid: 9606)

>sp|Q9NT99|LRC4B_HUMAN Leucine-rich repeat-containing protein 4B OS=Homo sapiens GN=LRRC4B PE=2 SV=3

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 6/158 (3%)

Query: 16  ASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFL 75
            S    SCP+ CSC  +A +  V C  R+   +P  I ++T+ L+L  N I V++ + F 
Sbjct: 50  GSPPATSCPVACSCSNQASR--VICTRRDLAEVPASIPVNTRYLNLQENGIQVIRTDTFK 107

Query: 76  QMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINL 133
            +   +++ L L K  +  ++  AF G+ +++ L+L DN L+TVP  +  Y+  L+ + L
Sbjct: 108 HL--RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWL 165

Query: 134 AHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
            +NPI  I SY+F   P +R +D+   +     SEA +
Sbjct: 166 RNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAF 203

Synaptic adhesion protein. Regulates the formation of excitatory synapses. The trans-synaptic adhesion between LRRC4B and PTPRF regulates the formation of excitatory synapses in a bidirectional manner.

Homo sapiens (taxid: 9606)

>sp|P0C192|LRC4B_MOUSE Leucine-rich repeat-containing protein 4B OS=Mus musculus GN=Lrrc4b PE=1 SV=1

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 6/158 (3%)

Query: 16  ASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFL 75
            S    SCP  CSC  +A +  V C  R    +P  I ++T+ L+L  N+I V++ + F 
Sbjct: 52  GSPPATSCPAACSCSNQASR--VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFK 109

Query: 76  QMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINL 133
            +   +++ L L K  +  ++  AF G+ +++ L+L DN L+TVP  +  Y+  L+ + L
Sbjct: 110 HL--RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWL 167

Query: 134 AHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
            +NPI  I SY+F   P +R +D+   +     SEA +
Sbjct: 168 RNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAF 205

Synaptic adhesion protein. Regulates the formation of excitatory synapses. The trans-synaptic adhesion between LRRC4B and PTPRF regulates the formation of excitatory synapses in a bidirectional manner.

Mus musculus (taxid: 10090)

>sp|P0CC10|LRC4B_RAT Leucine-rich repeat-containing protein 4B OS=Rattus norvegicus GN=Lrrc4b PE=1 SV=1

 Score = 85.9 bits (211), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 6/158 (3%)

Query: 16  ASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFL 75
            S    SCP  CSC  +A +  V C  R    +P  I ++T+ L+L  N+I V++ + F 
Sbjct: 52  GSPPATSCPAACSCSNQASR--VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFK 109

Query: 76  QMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINL 133
            +   +++ L L K  +  ++  AF G+ +++ L+L DN L+TVP  +  Y+  L+ + L
Sbjct: 110 HL--RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWL 167

Query: 134 AHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
            +NPI  I SY+F   P +R +D+   +     SEA +
Sbjct: 168 RNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAF 205

Synaptic adhesion protein. Regulates the formation of excitatory synapses. The trans-synaptic adhesion between LRRC4B and PTPRF regulates the formation of excitatory synapses in a bidirectional manner.

Rattus norvegicus (taxid: 10116)

>sp|Q9HBW1|LRRC4_HUMAN Leucine-rich repeat-containing protein 4 OS=Homo sapiens GN=LRRC4 PE=1 SV=2

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 81/152 (53%), Gaps = 6/152 (3%)

Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
           +CP  CSC  +  K  V C  R    +P+GI  +T+ L+L  NNI ++Q + F  +   +
Sbjct: 45  NCPSVCSCSNQFSK--VVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLH--H 100

Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIN 139
           ++ L L +  +  ++  AF G+ +++ L+L DN L+ +PS    Y+  L+ + L +NPI 
Sbjct: 101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160

Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
            I SY+F   P +  +D+   +     SE  +
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

Synaptic adhesion protein. Regulates the formation of exitatory synapses through the recruitment of pre-and-postsynaptic proteins. Organize the lamina/pathway-specific differentiation of dendrites. Plays a important role for auditory synaptic responses. Involved in the suppression of glioma.

Homo sapiens (taxid: 9606)

>sp|Q45R42|LRRC4_RAT Leucine-rich repeat-containing protein 4 OS=Rattus norvegicus GN=Lrrc4 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 81/152 (53%), Gaps = 6/152 (3%)

Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
           +CP  CSC  +  K  V C  R    +P+GI  +T+ L+L  NNI ++Q + F  +   +
Sbjct: 44  NCPSVCSCSNQFSK--VVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLH--H 99

Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIN 139
           ++ L L +  +  ++  AF G+ +++ L+L DN L+ +PS    Y+  L+ + L +NPI 
Sbjct: 100 LEVLQLGRNAIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 159

Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
            I SY+F   P +  +D+   +     SE  +
Sbjct: 160 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 191

Synaptic adhesion protein. Regulates the formation of exitatory synapses through the recruitment of pre-and-postsynaptic proteins. Organize the lamina/pathway-specific differentiation of dendrites. Plays a important role for auditory synaptic responses. Involved in the suppression of glioma.

Rattus norvegicus (taxid: 10116)

>sp|Q99PH1|LRRC4_MOUSE Leucine-rich repeat-containing protein 4 OS=Mus musculus GN=Lrrc4 PE=1 SV=2

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 81/152 (53%), Gaps = 6/152 (3%)

Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
           +CP  CSC  +  K  V C  R    +P+GI  +T+ L+L  NNI ++Q + F  +   +
Sbjct: 44  NCPSVCSCSNQFSK--VVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLH--H 99

Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIN 139
           ++ L L +  +  ++  AF G+ +++ L+L DN L+ +PS    Y+  L+ + L +NPI 
Sbjct: 100 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 159

Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
            I SY+F   P +  +D+   +     SE  +
Sbjct: 160 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 191

Synaptic adhesion protein. Regulates the formation of exitatory synapses through the recruitment of pre-and-postsynaptic proteins. Organize the lamina/pathway-specific differentiation of dendrites. Plays a important role for auditory synaptic responses. Involved in the suppression of glioma.

Mus musculus (taxid: 10090)

>sp|Q9WVB4|SLIT3_MOUSE Slit homolog 3 protein OS=Mus musculus GN=Slit3 PE=2 SV=2

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 8/163 (4%)

Query: 13  TLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKE 72
           ++L+    A+CP  C+C       +V+C       +P GI  + + LDL  NNI  + K 
Sbjct: 24  SILSGPPAAACPTKCTCSAA----SVDCHGLGLRAVPRGIPRNAERLDLDRNNITRITKM 79

Query: 73  IFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKS 130
            F   G+ N++ L+L   ++  ++  AF+ +  ++ L L+ N L  +P L++   P L  
Sbjct: 80  DF--AGLKNLRVLHLEDNQVSIIERGAFQDLKQLERLRLNKNKLQVLPELLFQSTPKLTR 137

Query: 131 INLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
           ++L+ N I  I   +F+   G++ + + N  I  I   AF  +
Sbjct: 138 LDLSENQIQGIPRKAFRGVTGVKNLQLDNNHISCIEDGAFRAL 180

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Mus musculus (taxid: 10090)

>sp|Q504C1|LRIT2_DANRE Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 2 OS=Danio rerio GN=lrit2 PE=2 SV=2

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 88/172 (51%), Gaps = 6/172 (3%)

Query: 1   MCHKFILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLD 60
           +C  F L VF   +L S   + C  GCSC      R++ C++     IP+G+  D   + 
Sbjct: 3   VCVLFHLIVF--CILISHISSECFPGCSCGTDRHGRSLTCMETALTGIPDGLPEDLTKIR 60

Query: 61  LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
           +  + ++ L + +F    +  ++ L+L    +  ++ ++  G+ N+ EL L  N L +VP
Sbjct: 61  IEKSQLSELPEAVFSH--VKALKHLWLNFNDIAIINIKSLEGLANLTELRLQGNKLRSVP 118

Query: 121 SLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
              +   P LK ++L HN I+ +  ++ +  PG+ Y+D+S+ Q+  I  + F
Sbjct: 119 WTAFEETPNLKILDLKHNRIDALPEHALKFLPGLTYLDLSSNQLSVISKDVF 170

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
91081765	605	PREDICTED: similar to kek1 [Tribolium ca	0.858	0.381	0.400	3e-42
328715086	748	PREDICTED: hypothetical protein LOC10016	0.568	0.204	0.483	5e-42
383858349	627	PREDICTED: leucine-rich repeat-containin	0.628	0.269	0.477	4e-39
66499167	630	PREDICTED: leucine-rich repeat-containin	0.617	0.263	0.440	1e-38
380012878	612	PREDICTED: leucine-rich repeat-containin	0.635	0.279	0.433	1e-38
195176173	817	GL10073 [Drosophila persimilis] gi|19411	0.583	0.192	0.496	2e-38
198472318	886	GA11531 [Drosophila pseudoobscura pseudo	0.583	0.177	0.496	3e-38
20152123	810	SD01674p [Drosophila melanogaster]	0.561	0.186	0.503	6e-38
77455258	864	CG12283 [Drosophila simulans]	0.561	0.174	0.503	6e-38
77455256	864	CG12283 [Drosophila simulans]	0.561	0.174	0.503	6e-38

>gi|91081765|ref|XP_973226.1| PREDICTED: similar to kek1 [Tribolium castaneum] gi|270006351|gb|EFA02799.1| kekkon-1 [Tribolium castaneum]

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 101/252 (40%), Positives = 158/252 (62%), Gaps = 21/252 (8%)

Query: 21  ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
            +CP  C+CKWK GK+TVEC +R   TIPE +D +TQVLDLS NN+ +L +E F++ G+ 
Sbjct: 19  GNCPSPCTCKWKGGKQTVECTERGLITIPESVDPETQVLDLSGNNLQILPRETFVRSGLL 78

Query: 81  NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPI 138
           N+Q+++LR+C++  +DD AFRG+TN+ ELDLS NLL+ VPS  +  +P+L+ + LA+NPI
Sbjct: 79  NLQRVFLRRCRIGQIDDLAFRGLTNLIELDLSHNLLTAVPSGTFRDVPFLRDLVLAYNPI 138

Query: 139 NQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSI 198
            +I S +F++ PG+  +D+SNC+I  I S+AF  + +  S L L+    S    R + ++
Sbjct: 139 QKIDSQAFKTIPGLIKLDLSNCEIQVIASKAFEGIEMLES-LKLNGNRLSELRLRTVETL 197

Query: 199 NR--KIYDHVN-WNSN-KINIKEETVLSKDNSYLSVFSGGVDLAAASSPGGENIYDQKST 254
           NR   I  H N W+ + ++   +E +++ +  Y         ++   S G E + D+   
Sbjct: 198 NRLHGIEMHDNPWHCDCRLRAVKEWLVNNNIPY--------PISPICSGGPERLIDK--- 246

Query: 255 LTVFDTELHTDD 266
              F TELH DD
Sbjct: 247 --TF-TELHIDD 255

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328715086|ref|XP_003245526.1| PREDICTED: hypothetical protein LOC100160315 [Acyrthosiphon pisum]

 Score =  177 bits (449), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 75/155 (48%), Positives = 110/155 (70%), Gaps = 2/155 (1%)

Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
            CP  CSCKWK G+RTVEC DR   T+P G+D DTQVLDLS NN+ +L  E F + G+ N
Sbjct: 32  GCPAVCSCKWKGGRRTVECADRALITVPTGVDADTQVLDLSGNNLQILPNETFYKAGLAN 91

Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIN 139
           +QK YLR C++  +D+ AFRG+TN+ ELDLS+N+L++VPS ++  +PYL+ +++A NPI 
Sbjct: 92  LQKAYLRNCRIGQIDESAFRGLTNLIELDLSNNMLTSVPSYVFRDVPYLRDLSVAGNPIQ 151

Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMV 174
           +I +++F   P +  +D SNC + ++   AF  +V
Sbjct: 152 KIEAHAFSGCPSVVKVDASNCGLQSVAGLAFSGVV 186

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858349|ref|XP_003704664.1| PREDICTED: leucine-rich repeat-containing protein 4-like [Megachile rotundata]

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 83/174 (47%), Positives = 121/174 (69%), Gaps = 5/174 (2%)

Query: 7   LSVFLL---TLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSS 63
           +SVFLL   T L  VT   C   CSCKWK+GKRTVECI+R   +IPE +D +TQVLD S 
Sbjct: 3   ISVFLLYVTTFLGIVTSDKCADECSCKWKSGKRTVECINRALTSIPEWVDPETQVLDTSG 62

Query: 64  NNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI 123
           N+I  L   IF+++ +TN+Q+LYLR+C+++ +D  A  G+TN+ ELDLS NLL+ VPS  
Sbjct: 63  NDIRTLPSNIFVRVRLTNLQRLYLRECRIDRIDSEALAGLTNLVELDLSHNLLTVVPSAS 122

Query: 124 Y--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVL 175
           +   P+L+ + L++NP+ +I S++F+STP +  +D+SN Q+  I S+ F  + L
Sbjct: 123 FTDTPFLRDLVLSNNPLKRIHSHAFKSTPNLVKLDLSNTQLVEIESKGFRGLEL 176

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66499167|ref|XP_624568.1| PREDICTED: leucine-rich repeat-containing protein 24 [Apis mellifera]

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 74/168 (44%), Positives = 120/168 (71%), Gaps = 2/168 (1%)

Query: 5   FILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSN 64
            I  +++ TLL  VT   C + CSCKWK+GKRTVEC++R   +IPE +D +TQVLD S N
Sbjct: 4   LIFFLYVTTLLGIVTSDKCAVECSCKWKSGKRTVECVNRALTSIPEWVDPETQVLDTSGN 63

Query: 65  NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY 124
           +I  L   IF+++ +TN+Q+LYLR+C+++ +D  A  G+TN+ ELDLS NLL+ VP+  +
Sbjct: 64  DIRTLPSNIFVRVRLTNLQRLYLRECRIDRIDSEALAGLTNLVELDLSHNLLTVVPTASF 123

Query: 125 I--PYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
           +  P+L+ + L++NP+ ++ S++F+STP +  +D+S+ Q+  I ++ F
Sbjct: 124 LDTPFLRDLVLSYNPLKRVHSHAFKSTPNLVKLDLSHTQLVEIEAKGF 171

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012878|ref|XP_003690501.1| PREDICTED: leucine-rich repeat-containing protein 4B-like [Apis florea]

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/173 (43%), Positives = 122/173 (70%), Gaps = 2/173 (1%)

Query: 5   FILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSN 64
            I  +++ TLL  VT   C + CSCKWK+GKRTVEC++R   +IPE +D +TQVLD S N
Sbjct: 4   LIFFLYVTTLLGIVTSDKCAVECSCKWKSGKRTVECVNRALTSIPEWVDPETQVLDTSGN 63

Query: 65  NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY 124
           +I  L   IF+++ +TN+Q+LYLR+C+++ +D  A  G+TN+ ELDLS NLL+ VP+  +
Sbjct: 64  DIRTLPSNIFVRVRLTNLQRLYLRECRIDRIDSEALAGLTNLVELDLSHNLLTVVPTASF 123

Query: 125 I--PYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVL 175
           +  P+L+ + L++NP+ ++ S++F+STP +  +D+S+ Q+  I ++ F  + L
Sbjct: 124 LDTPFLRDLVLSYNPLKRVHSHAFKSTPNLVKLDLSHTQLVEIEAKGFRGLEL 176

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195176173|ref|XP_002028708.1| GL10073 [Drosophila persimilis] gi|194111221|gb|EDW33264.1| GL10073 [Drosophila persimilis]

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/159 (49%), Positives = 110/159 (69%), Gaps = 2/159 (1%)

Query: 14  LLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEI 73
           L A+  Q++C   C+CKWK GK+TVECIDR+   IPE ID +TQVLD+S N +  L  E 
Sbjct: 57  LDANPAQSTCQTVCACKWKGGKQTVECIDRHLIQIPEHIDTNTQVLDMSGNKLQTLSNEQ 116

Query: 74  FLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI--YIPYLKSI 131
           F++  + N+QKLYLR CK+  ++   F+G+TN+ ELDLS NLL TVPSL   YIP L+ +
Sbjct: 117 FVRANLLNLQKLYLRNCKIGEIERETFKGLTNLVELDLSHNLLVTVPSLALGYIPSLREL 176

Query: 132 NLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
            LA N I++I   +F +TP +  +D+S+C I TI ++AF
Sbjct: 177 TLASNHIHKIEGQAFGNTPSLHKLDLSHCDIQTISAQAF 215

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198472318|ref|XP_001355897.2| GA11531 [Drosophila pseudoobscura pseudoobscura] gi|198138961|gb|EAL32956.2| GA11531 [Drosophila pseudoobscura pseudoobscura]

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 79/159 (49%), Positives = 110/159 (69%), Gaps = 2/159 (1%)

Query: 14  LLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEI 73
           L A+  Q++C   C+CKWK GK+TVECIDR+   IPE ID +TQVLD+S N +  L  E 
Sbjct: 84  LDANPAQSTCQTVCACKWKGGKQTVECIDRHLIQIPEHIDTNTQVLDMSGNKLQTLSNEQ 143

Query: 74  FLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI--YIPYLKSI 131
           F++  + N+QKLYLR CK+  ++   F+G+TN+ ELDLS NLL TVPSL   YIP L+ +
Sbjct: 144 FVRANLLNLQKLYLRNCKIGEIERETFKGLTNLVELDLSHNLLVTVPSLALGYIPSLREL 203

Query: 132 NLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
            LA N I++I   +F +TP +  +D+S+C I TI ++AF
Sbjct: 204 TLASNHIHKIEGQAFGNTPSLHKLDLSHCDIQTISAQAF 242

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|20152123|gb|AAM11421.1| SD01674p [Drosophila melanogaster]

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 77/153 (50%), Positives = 108/153 (70%), Gaps = 2/153 (1%)

Query: 20  QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGI 79
           Q++C   C+CKWK GK+TVECIDR+   IPE ID +TQVLD+S N +  L  E F++  +
Sbjct: 87  QSTCQTVCACKWKGGKQTVECIDRHLIQIPEHIDPNTQVLDMSGNKLQTLSNEQFIRANL 146

Query: 80  TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNP 137
            N+QKLYLR CK+  ++   F+G+TN+ ELDLS NLL TVPSL   +IP L+ + LA N 
Sbjct: 147 LNLQKLYLRNCKIGEIERETFKGLTNLVELDLSHNLLVTVPSLALGHIPSLRELTLASNH 206

Query: 138 INQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
           I++I S +F +TP +  +D+S+C I TI ++AF
Sbjct: 207 IHKIESQAFGNTPSLHKLDLSHCDIQTISAQAF 239

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|77455258|gb|ABA86438.1| CG12283 [Drosophila simulans]

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 77/153 (50%), Positives = 108/153 (70%), Gaps = 2/153 (1%)

Query: 20  QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGI 79
           Q++C   C+CKWK GK+TVECIDR+   IPE ID +TQVLD+S N +  L  E F++  +
Sbjct: 79  QSTCQTVCACKWKGGKQTVECIDRHLIQIPEHIDPNTQVLDMSGNKLQTLSNEQFIRANL 138

Query: 80  TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNP 137
            N+QKLYLR CK+  ++   F+G+TN+ ELDLS NLL TVPSL   +IP L+ + LA N 
Sbjct: 139 LNLQKLYLRNCKIGEIERETFKGLTNLVELDLSHNLLVTVPSLALGHIPSLRELTLASNH 198

Query: 138 INQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
           I++I S +F +TP +  +D+S+C I TI ++AF
Sbjct: 199 IHKIESQAFGNTPSLHKLDLSHCDIQTISAQAF 231

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|77455256|gb|ABA86437.1| CG12283 [Drosophila simulans]

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 77/153 (50%), Positives = 108/153 (70%), Gaps = 2/153 (1%)

Query: 20  QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGI 79
           Q++C   C+CKWK GK+TVECIDR+   IPE ID +TQVLD+S N +  L  E F++  +
Sbjct: 79  QSTCQTVCACKWKGGKQTVECIDRHLIQIPEHIDPNTQVLDMSGNKLQTLSNEQFIRANL 138

Query: 80  TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNP 137
            N+QKLYLR CK+  ++   F+G+TN+ ELDLS NLL TVPSL   +IP L+ + LA N 
Sbjct: 139 LNLQKLYLRNCKIGEIERETFKGLTNLVELDLSHNLLVTVPSLALGHIPSLRELTLASNH 198

Query: 138 INQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
           I++I S +F +TP +  +D+S+C I TI ++AF
Sbjct: 199 IHKIESQAFGNTPSLHKLDLSHCDIQTISAQAF 231

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
FB|FBgn0015399	880	kek1 "kekkon-1" [Drosophila me	0.561	0.171	0.503	5.4e-37
FB|FBgn0015400	894	kek2 "kekkon-2" [Drosophila me	0.602	0.181	0.448	2.8e-31
FB|FBgn0028370	1021	kek3 "kekkon-3" [Drosophila me	0.609	0.160	0.386	3.3e-29
FB|FBgn0039862	836	kek6 "kek6" [Drosophila melano	0.598	0.192	0.319	1.1e-25
ZFIN|ZDB-GENE-050522-533	647	lrrc4c "leucine rich repeat co	0.602	0.250	0.339	3.5e-20
FB|FBgn0032484	649	kek4 "kekkon4" [Drosophila mel	0.661	0.274	0.298	1e-19
UNIPROTKB|E2REC5	639	LRRC4C "Uncharacterized protei	0.598	0.251	0.315	1.1e-18
UNIPROTKB|F1SHH6	640	LRRC4C "Uncharacterized protei	0.598	0.251	0.315	1.1e-18
UNIPROTKB|F1MXH5	640	LRRC4C "Uncharacterized protei	0.598	0.251	0.315	1.1e-18
UNIPROTKB|Q9HCJ2	640	LRRC4C "Leucine-rich repeat-co	0.598	0.251	0.315	1.1e-18

FB|FBgn0015399 kek1 "kekkon-1" [Drosophila melanogaster (taxid:7227)]

 Score = 407 (148.3 bits), Expect = 5.4e-37, P = 5.4e-37
 Identities = 77/153 (50%), Positives = 108/153 (70%)

Query:    20 QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGI 79
             Q++C   C+CKWK GK+TVECIDR+   IPE ID +TQVLD+S N +  L  E F++  +
Sbjct:    87 QSTCQTVCACKWKGGKQTVECIDRHLIQIPEHIDPNTQVLDMSGNKLQTLSNEQFIRANL 146

Query:    80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNP 137
              N+QKLYLR CK+  ++   F+G+TN+ ELDLS NLL TVPSL   +IP L+ + LA N 
Sbjct:   147 LNLQKLYLRNCKIGEIERETFKGLTNLVELDLSHNLLVTVPSLALGHIPSLRELTLASNH 206

Query:   138 INQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
             I++I S +F +TP +  +D+S+C I TI ++AF
Sbjct:   207 IHKIESQAFGNTPSLHKLDLSHCDIQTISAQAF 239

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0048477 "oogenesis" evidence=IMP

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IGI;IMP;TAS

GO:0005154 "epidermal growth factor receptor binding" evidence=IPI

GO:0007175 "negative regulation of epidermal growth factor-activated receptor activity" evidence=IDA;TAS

GO:0016021 "integral to membrane" evidence=TAS

GO:0000910 "cytokinesis" evidence=IMP

GO:0048019 "receptor antagonist activity" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0015400 kek2 "kekkon-2" [Drosophila melanogaster (taxid:7227)]

 Score = 354 (129.7 bits), Expect = 2.8e-31, P = 2.8e-31
 Identities = 74/165 (44%), Positives = 108/165 (65%)

Query:    11 LLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQ 70
             LL LLA +T A  P  C CKWK GK+TVEC  +    +PEG+D  TQVL+ S N + VLQ
Sbjct:    10 LLALLA-ITAACPPEVCVCKWKGGKQTVECGGQQLSNLPEGMDPGTQVLNFSGNALQVLQ 68

Query:    71 KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPY--L 128
              E FL+M + N+QK+YL + +L  + ++AFRG+TN+ ELDLS+N L  VPS  +  Y  L
Sbjct:    69 SERFLRMDLLNLQKIYLSRNQLIRIHEKAFRGLTNLVELDLSENALQNVPSETFQDYSSL 128

Query:   129 KSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
               ++L+ NPI ++ + +F+    +  +++SNCQ+  I +EAF  M
Sbjct:   129 MRLSLSGNPIRELKTSAFRHLSFLTTLELSNCQVERIENEAFVGM 173

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

FB|FBgn0028370 kek3 "kekkon-3" [Drosophila melanogaster (taxid:7227)]

 Score = 319 (117.4 bits), Expect = 3.3e-29, Sum P(2) = 3.3e-29
 Identities = 65/168 (38%), Positives = 103/168 (61%)

Query:     7 LSVFLLTLLASVTQ--ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSN 64
             L ++LL   + + Q  A CP  C CKWK+GK +V C++ N   IP+ +D  TQ+LDLS N
Sbjct:    61 LLLWLLCCCSQLGQLRAECPAVCECKWKSGKESVLCLNANLTHIPQPLDAGTQLLDLSGN 120

Query:    65 NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSL-I 123
              I ++  + F    + N+QK+YL +C L  ++  AFR + N+ ELDLS NLLS +PSL +
Sbjct:   121 EIQLIPDDSFATAQLLNLQKVYLARCHLRLIERHAFRKLINLVELDLSQNLLSAIPSLAL 180

Query:   124 Y-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
             Y +  L+ + L+ NPI ++   +F   P +  +++S+C++  I   AF
Sbjct:   181 YHVSELRELRLSGNPILRVPDDAFGHVPQLVKLELSDCRLSHIAVRAF 228

GO:0005886 "plasma membrane" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISM

FB|FBgn0039862 kek6 "kek6" [Drosophila melanogaster (taxid:7227)]

 Score = 254 (94.5 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
 Identities = 52/163 (31%), Positives = 91/163 (55%)

Query:     5 FILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSN 64
             +IL   +   +A     SC   C+CKW  GK++  C      TIP  +  + QVL L+ N
Sbjct:    20 WILLCLVAWTVADDWSLSCASNCTCKWTNGKKSAICSSLQLTTIPNTLSTELQVLVLNDN 79

Query:    65 NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY 124
             +I  L +E F  +G+ N+Q++YL+K +++++   +FR +  + E+DLSDN L  +    +
Sbjct:    80 HIPYLNREEFSTLGLLNLQRIYLKKSEVQYIHKESFRNLKILVEIDLSDNKLEMLDKDTF 139

Query:   125 I--PYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
             +    L+ + L  NP+ ++++Y F   P +R +DM +C I  I
Sbjct:   140 MGNDRLRILYLNGNPLKRLAAYQFPILPHLRTLDMHDCLISYI 182

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

ZFIN|ZDB-GENE-050522-533 lrrc4c "leucine rich repeat containing 4C" [Danio rerio (taxid:7955)]

 Score = 228 (85.3 bits), Expect = 3.5e-20, Sum P(2) = 3.5e-20
 Identities = 58/171 (33%), Positives = 97/171 (56%)

Query:     5 FILSVFL-LTLLASVTQA-SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLS 62
             F+LS+ L L ++A + +A +CP  CSC  +  K  V C  R    +P+GI  +T+ L+L 
Sbjct:    28 FVLSLALQLLVVAGLVRAQTCPSVCSCSNQFSK--VICTRRGLRDVPDGISTNTRYLNLQ 85

Query:    63 SNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS- 121
              N I V++ + F  +   +++ L L K  +  ++  AF G+ N++ L+L DN L+T+P+ 
Sbjct:    86 ENLIQVIKVDSFKHL--RHLEILQLSKNHIRNIEIGAFNGLANLNTLELFDNRLTTIPNG 143

Query:   122 -LIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSE-AF 170
                Y+  LK + L +NPI  I SY+F   P +R +D+   +  +  SE AF
Sbjct:   144 AFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLSYISEGAF 194

GO:0050770 "regulation of axonogenesis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

FB|FBgn0032484 kek4 "kekkon4" [Drosophila melanogaster (taxid:7227)]

 Score = 215 (80.7 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
 Identities = 55/184 (29%), Positives = 102/184 (55%)

Query:     5 FILSVFLLTLLASVTQASCPLGCS---CKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDL 61
             F+  ++ L L+     A   L C    CKW +GK+T +C + +   +PE +  + QVLDL
Sbjct:    20 FLFKIYCLALIFRSASADWLLDCGNCHCKWNSGKKTADCRNLSLSGVPEYLSPEVQVLDL 79

Query:    62 SSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL-STVP 120
             S N+I  L++  FL   + N+QKL +R   L++++ R+F  +  + ELDLS+NLL   +P
Sbjct:    80 SHNHIFYLEENAFLTTHLQNLQKLLIRNGTLKYLNQRSFTQLQILIELDLSNNLLVDLLP 139

Query:   121 SLI-YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSN 179
             ++   +  +++I L  N +  +    F++   +  I++   ++ +I ++AF  + L  S 
Sbjct:   140 NVFDCLSKVRAIFLNGNLLQALRHGVFRNLKYLHKIELKRNRLVSIDAKAFVGVPLL-SQ 198

Query:   180 LTLD 183
             + LD
Sbjct:   199 IYLD 202

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

UNIPROTKB|E2REC5 LRRC4C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 234 (87.4 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 53/168 (31%), Positives = 95/168 (56%)

Query:     6 ILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNN 65
             +L++ LL +   V   +CP  CSC  +  K  V C+ +N   +P+GI  +T++L+L  N 
Sbjct:    30 LLALQLLVVAGLVRAQTCPSVCSCSNQFSK--VICVRKNLREVPDGISTNTRLLNLHENQ 87

Query:    66 INVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LI 123
             I +++   F  +   +++ L L +  +  ++  AF G+ N++ L+L DN L+T+P+   +
Sbjct:    88 IQIIKVNSFKHL--RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 145

Query:   124 YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSE-AF 170
             Y+  LK + L +NPI  I SY+F   P +R +D+   +  +  SE AF
Sbjct:   146 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 193

GO:0050770 "regulation of axonogenesis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1SHH6 LRRC4C "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 234 (87.4 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 53/168 (31%), Positives = 95/168 (56%)

Query:     6 ILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNN 65
             +L++ LL +   V   +CP  CSC  +  K  V C+ +N   +P+GI  +T++L+L  N 
Sbjct:    30 LLALQLLVVAGLVRAQTCPSVCSCSNQFSK--VICVRKNLREVPDGISTNTRLLNLHENQ 87

Query:    66 INVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LI 123
             I +++   F  +   +++ L L +  +  ++  AF G+ N++ L+L DN L+T+P+   +
Sbjct:    88 IQIIKVNSFKHL--RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 145

Query:   124 YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSE-AF 170
             Y+  LK + L +NPI  I SY+F   P +R +D+   +  +  SE AF
Sbjct:   146 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 193

GO:0050770 "regulation of axonogenesis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MXH5 LRRC4C "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 234 (87.4 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 53/168 (31%), Positives = 95/168 (56%)

Query:     6 ILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNN 65
             +L++ LL +   V   +CP  CSC  +  K  V C+ +N   +P+GI  +T++L+L  N 
Sbjct:    30 LLALQLLVVAGLVRAQTCPSVCSCSNQFSK--VICVRKNLRDVPDGISTNTRLLNLHENQ 87

Query:    66 INVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LI 123
             I +++   F  +   +++ L L +  +  ++  AF G+ N++ L+L DN L+T+P+   +
Sbjct:    88 IQIIKVNSFKHL--RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 145

Query:   124 YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSE-AF 170
             Y+  LK + L +NPI  I SY+F   P +R +D+   +  +  SE AF
Sbjct:   146 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 193

GO:0050770 "regulation of axonogenesis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9HCJ2 LRRC4C "Leucine-rich repeat-containing protein 4C" [Homo sapiens (taxid:9606)]

 Score = 234 (87.4 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 53/168 (31%), Positives = 95/168 (56%)

Query:     6 ILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNN 65
             +L++ LL +   V   +CP  CSC  +  K  V C+ +N   +P+GI  +T++L+L  N 
Sbjct:    30 LLALQLLVVAGLVRAQTCPSVCSCSNQFSK--VICVRKNLREVPDGISTNTRLLNLHENQ 87

Query:    66 INVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LI 123
             I +++   F  +   +++ L L +  +  ++  AF G+ N++ L+L DN L+T+P+   +
Sbjct:    88 IQIIKVNSFKHL--RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 145

Query:   124 YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSE-AF 170
             Y+  LK + L +NPI  I SY+F   P +R +D+   +  +  SE AF
Sbjct:   146 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 193

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=NAS

GO:0050770 "regulation of axonogenesis" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	269
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.001

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 50.6 bits (122), Expect = 7e-09
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + LDLS+N + V+    F  +   N++ L L    L  +   AF G+ ++  LDLS N L
Sbjct: 3   KSLDLSNNRLTVIPDGAFKGL--PNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 81  NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPI 138
           N++ L L   +L  + D AF+G+ N+  LDLS N L+++   +   +P L+S++L+ N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 14/43 (32%), Positives = 27/43 (62%)

Query: 128 LKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
           LKS++L++N +  I   +F+  P ++ +D+S   + +I  EAF
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAF 44

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.5 bits (83), Expect = 0.001
 Identities = 15/40 (37%), Positives = 28/40 (70%)

Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISS 143
           TN++ LDLS+N ++ +P L  +P L++++L+ N I  +S 
Sbjct: 1   TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	269
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		6e-18
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		1e-17
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		2e-17
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		3e-15
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		4e-11
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		5e-10
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		5e-10
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		2e-09
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		2e-09
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		3e-09
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		3e-09
2xot_A	361	Crystal Structure Of Neuronal Leucine Rich Repeat P		7e-09
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-08
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		2e-08
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		3e-08
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		4e-08
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		5e-08
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		6e-08
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		6e-08
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		7e-08
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		7e-08
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		8e-08
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		9e-08
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		4e-04
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		1e-07
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		1e-07
3g3b_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		1e-07
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		2e-07
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		4e-07
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		6e-07
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		6e-07
3twi_D	179	Variable Lymphocyte Receptor Recognition Of The Imm		8e-07
3a79_A	580	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		2e-06
2z64_A	599	Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Comp		2e-06
3vq1_A	606	Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLE		2e-06
2z81_A	549	Crystal Structure Of The Tlr1-tlr2 Heterodimer Indu		2e-06
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		2e-06
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		8e-06
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		8e-06
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		7e-05
3v44_A	407	Crystal Structure Of The N-Terminal Fragment Of Zeb		8e-05
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		2e-04
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		3e-04

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 86/152 (56%), Gaps = 6/152 (3%)
Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
           +CP  CSC  +  K  V C+ +N   +P+GI  +T++L+L  N I +++   F  +   +
Sbjct: 34  TCPSVCSCSNQFSK--VICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHL--RH 89
Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPIN 139
           ++ L L +  +  ++  AF G+ N++ L+L DN L+T+P  + +Y+  LK + L +NPI 
Sbjct: 90  LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
            I SY+F   P +R +D+   +  +  SE  +
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 19  TQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMG 78
           T  SCP  CSC  +A +  V C  R    +P  I ++T+ L+L  N+I V++ + F  + 
Sbjct: 2   TGTSCPAACSCSNQASR--VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHL- 58
Query: 79  ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHN 136
             +++ L L K  +  ++  AF G+ +++ L+L DN L+TVP  +  Y+  L+ + L +N
Sbjct: 59  -RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 137 PINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
           PI  I SY+F   P +R +D+   +     SEA +
Sbjct: 118 PIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAF 152

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 19  TQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMG 78
           T  SCP  CSC  +A +  V C  R    +P  I ++T+ L+L  N+I V++ + F  + 
Sbjct: 2   TGTSCPAACSCSNQASR--VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHL- 58
Query: 79  ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHN 136
             +++ L L K  +  ++  AF G+ +++ L+L DN L+TVP  +  Y+  L+ + L +N
Sbjct: 59  -RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 137 PINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
           PI  I SY+F   P +R +D+   +     SEA +
Sbjct: 118 PIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAF 152

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 81/152 (53%), Gaps = 6/152 (3%)
Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
           +CP  CSC  +  K  V C  R    +P+GI  +T+ L+L  NNI ++Q + F  +   +
Sbjct: 45  NCPSVCSCSNQFSK--VVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHL--HH 100
Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIN 139
           ++ L L +  +  ++  AF G+ +++ L+L DN L+ +PS    Y+  L+ + L +NPI 
Sbjct: 101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
            I SY+F   P +  +D+   +     SE  +
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 26/173 (15%)
Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM---- 77
            CP  C C   A  R V C  + F  +PEGI  +T++LDL  N I  L ++ F       
Sbjct: 2   GCPPRCECS--AQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLE 59
Query: 78  ------------------GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
                              + N++ L LR  +L+ +    F G++N+ +LD+S+N +  +
Sbjct: 60  ELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL 119
Query: 120 PSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
              ++  +  LKS+ +  N +  IS  +F     +  + +  C + +I +EA 
Sbjct: 120 LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 6/147 (4%)
Query: 26  GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKL 85
           GC+C    GK+ V+C  ++  ++P GI  DT+ LDL S  +  L    F   G+T +  L
Sbjct: 9   GCTCN--EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATF--RGLTKLTWL 64
Query: 86  YLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISS 143
            L   +L+ +    F  +T +  L L++N L+++P  ++  +  L  + L  N +  + S
Sbjct: 65  NLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124
Query: 144 YSFQSTPGIRYIDMSNCQIHTIYSEAF 170
             F     ++ + ++  Q+ +I + AF
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAF 151

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 6/147 (4%)
Query: 26  GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKL 85
           GC+C    GK+ V+C  ++  ++P GI  DT+ LDL S  +  L    F   G+T +  L
Sbjct: 9   GCTCN--EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATF--RGLTKLTWL 64
Query: 86  YLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISS 143
            L   +L+ +    F  +T +  L L++N L+++P  ++  +  L  + L  N +  + S
Sbjct: 65  NLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124
Query: 144 YSFQSTPGIRYIDMSNCQIHTIYSEAF 170
             F     ++ + ++  Q+ +I + AF
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAF 151

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 8/150 (5%)
Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  CSC       TVEC  +   ++P GI   T  LDL +N++  L   +F ++  T++
Sbjct: 1   CPSRCSCS----GTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDEL--TSL 54
Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQ 140
            +LYL   KL+ + +  F  +T++  L+LS N L ++P+ ++  +  LK + L  N +  
Sbjct: 55  TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS 114
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
           +    F     ++ + +   Q+ ++    F
Sbjct: 115 LPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 8/119 (6%)
Query: 21  ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
           A CP  CSC     +  V C +    ++P GI  D Q L L++N I  L+  +F  +   
Sbjct: 4   AGCPSQCSCD----QTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHL--V 57
Query: 81  NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
           N+Q+LY    KL  +    F  +T + +LDL+DN L ++P   +  +  L  I L +NP
Sbjct: 58  NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 15  LASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIF 74
           L     A CP GC C      R V+C D     +P+ I  DT +LDL +N+I+ L+K+ F
Sbjct: 19  LPPTYSAMCPFGCHCHL----RVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDF 74
Query: 75  LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
              G+ ++  L L   K+  + ++AF  +  + +L +S N L  +P
Sbjct: 75  --KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP 118

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 98/220 (44%), Gaps = 31/220 (14%)
Query: 21  ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
           A+CP  CSC       TV+C  +   ++P GI  + Q+L L  N I  L+  +F    + 
Sbjct: 11  AACPSQCSCS----GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVF--DSLI 64
Query: 81  NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPI 138
           N+++LYL   +L  +    F  +T +  LDL  N L+ +PS ++  + +LK + +  N +
Sbjct: 65  NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
Query: 139 NQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLT--------LDCRVQSAT 190
            ++     +    + ++ +   Q+ +I   AF  +    S+LT         DC      
Sbjct: 125 TELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRL----SSLTHAYLFGNPWDCE----- 174
Query: 191 PCRIMWSINRKIYDH----VNWNSNKINIKEETVLSKDNS 226
            CR +  +   + DH    + W+   +N  +    +  N+
Sbjct: 175 -CRDIMYLRNWVADHTSIAMRWDGKAVNDPDSAKCAGTNT 213

>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein Amigo-1 Length = 361

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 7/143 (4%)
Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
           SCP  C C        + C  +    +P+ +   T +LDLS NN++ L+ E +    +TN
Sbjct: 11  SCPANCLC----ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAE-WTPTRLTN 65
Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIN 139
           +  L L    L F+   AF  V N+  LDLS N L T+   ++  +  L+ + L +N I 
Sbjct: 66  LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV 125
Query: 140 QISSYSFQSTPGIRYIDMSNCQI 162
            +   +F+    ++ + +S  QI
Sbjct: 126 VVDRNAFEDMAQLQKLYLSQNQI 148

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 6/146 (4%)
Query: 27  CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
           CSC     K +V+C  +    IP  I  DT+ LDL SN ++ L  + F ++  T ++ LY
Sbjct: 12  CSCN--NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRL--TKLRLLY 67
Query: 87  LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSY 144
           L   KL+ +    F+ + N++ L ++DN L  +P  ++  +  L  + L  N +  +   
Sbjct: 68  LNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR 127
Query: 145 SFQSTPGIRYIDMSNCQIHTIYSEAF 170
            F S   + Y+ +   ++ ++    F
Sbjct: 128 VFDSLTKLTYLSLGYNELQSLPKGVF 153

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 73/150 (48%), Gaps = 11/150 (7%)
Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  C C+      TV+C  R    IP  I L T  L L+ N +  +  +      + ++
Sbjct: 2   CPAMCHCEGT----TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGR-LPHL 56
Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNPINQ 140
            KL L++ +L  ++  AF G +++ EL L +N +  + + +++    LK++NL  N I+ 
Sbjct: 57  VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC 116
Query: 141 ISSYSFQSTPGIRYIDMS----NCQIHTIY 166
           +   SF+    +  ++++    NC  H  +
Sbjct: 117 VMPGSFEHLNSLTSLNLASNPFNCNCHLAW 146

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 7/151 (4%)
Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
           +CP  C C+      TV+C ++    IPE I   T  L L++N   VL+     +  +  
Sbjct: 4   ACPEKCRCEGT----TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKK-LPQ 58
Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIN 139
           ++K+     K+  +++ AF G + ++E+ L+ N L  V   ++  +  LK++ L  N I 
Sbjct: 59  LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
            + + SF     +R + + + QI T+   AF
Sbjct: 119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 31/176 (17%)
Query: 26  GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKL 85
           G  C       T +C++ NFY IP+ +   T+ LDLS N +  L    F       +Q L
Sbjct: 1   GSPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFF--SFPELQVL 58
Query: 86  YLRKCKLEFVDDRAFRGVTNMDELDLSDNL-----------LSTVPSLI----------- 123
            L +C+++ ++D A++ ++++  L L+ N            LS++  L+           
Sbjct: 59  DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 118
Query: 124 ----YIPYLKSINLAHNPIN--QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
               ++  LK +N+AHN I   ++  Y F +   + ++D+S+ +I +IY     V+
Sbjct: 119 FPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVL 173

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 31/165 (18%)
Query: 37  TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
           T +C++ NFY IP+ +   T+ LDLS N +  L    F       +Q L L +C+++ ++
Sbjct: 13  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIE 70
Query: 97  DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
           D A++ ++++  L L+ N            LS++  L+               ++  LK 
Sbjct: 71  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKE 130
Query: 131 INLAHNPIN--QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
           +N+AHN I   ++  Y F +   + ++D+S+ +I +IY     V+
Sbjct: 131 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVL 174

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 31/165 (18%)
Query: 37  TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
           T +C++ NFY IP+ +   T+ LDLS N +  L    F       +Q L L +C+++ ++
Sbjct: 13  TYQCMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIE 70
Query: 97  DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
           D A++ ++++  L L+ N            LS++  L+               ++  LK 
Sbjct: 71  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 130
Query: 131 INLAHNPIN--QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
           +N+AHN I   ++  Y F +   + ++D+S+ +I +IY     V+
Sbjct: 131 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVL 174

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 31/165 (18%)
Query: 37  TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
           T +C++ NFY IP+ +   T+ LDLS N +  L    F       +Q L L +C+++ ++
Sbjct: 11  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIE 68
Query: 97  DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
           D A++ ++++  L L+ N            LS++  L+               ++  LK 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 131 INLAHNPIN--QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
           +N+AHN I   ++  Y F +   + ++D+S+ +I +IY     V+
Sbjct: 129 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 31/165 (18%)
Query: 37  TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
           T +C++ NFY IP+ +   T+ LDLS N +  L    F       +Q L L +C+++ ++
Sbjct: 11  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIE 68
Query: 97  DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
           D A++ ++++  L L+ N            LS++  L+               ++  LK 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 131 INLAHNPIN--QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
           +N+AHN I   ++  Y F +   + ++D+S+ +I +IY     V+
Sbjct: 129 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 8/119 (6%)
Query: 21  ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
           ++CP  CSC       TV+C  ++  ++P GI   TQVL L  N I  L+  +F ++  T
Sbjct: 9   SACPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRL--T 62
Query: 81  NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
            + +L L   +L  +    F  +T + +L L+DN L ++P   +  +  L  I L +NP
Sbjct: 63  QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 121

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 31/165 (18%)
Query: 37  TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
           T +C++ NFY IP+ +   T+ LDLS N +  L    F       +Q L L +C+++ ++
Sbjct: 35  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIE 92
Query: 97  DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
           D A++ ++++  L L+ N            LS++  L+               ++  LK 
Sbjct: 93  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 152
Query: 131 INLAHNPIN--QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
           +N+AHN I   ++  Y F +   + ++D+S+ +I +IY     V+
Sbjct: 153 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVL 196

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 31/158 (19%)
Query: 37  TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
           T +C++ NFY IP+ +   T+ LDLS N +  L    F       +Q L L +C+++ ++
Sbjct: 11  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIE 68
Query: 97  DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
           D A++ ++++  L L+ N            LS++  L+               ++  LK 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 131 INLAHNPIN--QISSYSFQSTPGIRYIDMSNCQIHTIY 166
           +N+AHN I   ++  Y F +   + ++D+S+ +I +IY
Sbjct: 129 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 165

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 129 KSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
           K+++L+ NP+  + SYSF S P ++ +D+S C+I TI   A+
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
           +CP  CSC       TV+C  ++  ++P GI   TQVL L  N I  L+  +F ++  T 
Sbjct: 2   ACPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRL--TQ 55
Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
           + +L L   +L  +    F  +T + +L L+DN L ++P   +  +  L  I L +NP
Sbjct: 56  LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 82/176 (46%), Gaps = 31/176 (17%)
Query: 26  GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKL 85
           G  C       T +C + NFY IP+ +   T+ LDLS N +  L    F       +Q L
Sbjct: 1   GSPCVEVVPNITYQCEELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSF--FSFPELQVL 58
Query: 86  YLRKCKLEFVDDRAFRGVTNMDELDLSDNL-----------LSTVPSLI----------- 123
            L +C+++ ++D A++ ++++  L L+ N            LS++  L+           
Sbjct: 59  DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 118
Query: 124 ----YIPYLKSINLAHNPIN--QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
               ++  LK +N+AHN I   ++  Y F +   + ++D+S+ +I +IY     V+
Sbjct: 119 FPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVL 173

>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant In Complex With A Protein Antigen Length = 170

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
           +CP  CSC       TV+C  ++  ++P GI   TQVL L  N I  L+  +F ++  T 
Sbjct: 2   ACPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRL--TQ 55
Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
           + +L L   +L  +    F  +T + +L L+DN L ++P   +  +  L  I L +NP
Sbjct: 56  LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNP 113

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 6/151 (3%)
Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  C C +   K T  C  +    +P GI   +Q + L  N I+ +    F      N+
Sbjct: 1   CPGACVC-YNEPKVTTSCPQQGLQAVPTGIPASSQRIFLHGNRISYVPAASF--QSCRNL 57
Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL-LSTVPSLIY--IPYLKSINLAHNPIN 139
             L+L    L  +D  AF G+T +++LDLSDN  L  V    +  + +L +++L    + 
Sbjct: 58  TILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQ 117
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
           ++    F+    ++Y+ + +  +  +    F
Sbjct: 118 ELGPGLFRGLAALQYLYLQDNNLQALPDNTF 148

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 60  DLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
           DLS + I  L K +F     T++++L L + ++  +DD AF G+T++ +L+LS N L ++
Sbjct: 281 DLSKSKIFALLKSVFSHF--TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI 338
Query: 120 PSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
            S ++  +  L+ ++L++N I  +   SF   P ++ + +   Q+ ++    F
Sbjct: 339 DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 6/151 (3%)
Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  C C +   K T  C  +    +P GI   +Q + L  N I+ +    F      N+
Sbjct: 2   CPGACVC-YNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASF--RACRNL 58
Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN--LLSTVPSLIY-IPYLKSINLAHNPIN 139
             L+L    L  +D  AF G+  +++LDLSDN  L S  P+  + +  L +++L    + 
Sbjct: 59  TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
           ++    F+    ++Y+ + +  +  +  + F
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 6/151 (3%)
Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  C C +   K T  C  +    +P GI   +Q + L  N I+ +    F      N+
Sbjct: 1   CPGACVC-YNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASF--RACRNL 57
Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN--LLSTVPSLIY-IPYLKSINLAHNPIN 139
             L+L    L  +D  AF G+  +++LDLSDN  L S  P+  + +  L +++L    + 
Sbjct: 58  TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 117
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
           ++    F+    ++Y+ + +  +  +  + F
Sbjct: 118 ELGPGLFRGLAALQYLYLQDNALQALPDDTF 148

>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The Immunodominant Glycoprotein Of Bacillus Anthracis Spores Length = 179

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 21  ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
           A+CP  CSC       TV C +R+  ++P GI   TQVL L  N I  L+  +F    +T
Sbjct: 11  AACPSQCSCS----GTTVNCQERSLASVPAGIPTTTQVLHLYINQITKLEPGVF--DSLT 64
Query: 81  NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
            +  L L   +L  +    F  +T +  L L  N L ++P  ++  +  L  I L +NP
Sbjct: 65  QLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNP 123

>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 580

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 43  RNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG 102
           R+F +IP G+    + LDLS N I  +           N+Q L L+  ++  ++  AF  
Sbjct: 41  RSFTSIPSGLTAAMKSLDLSFNKITYIGHGDL--RACANLQVLILKSSRINTIEGDAFYS 98
Query: 103 VTNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNP 137
           + +++ LDLSDN LS++ S  + P   LK +NL  NP
Sbjct: 99  LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 135

>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex Length = 599

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 32/176 (18%)
Query: 37  TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
           T +C+D+    +P+ I   T+ +DLS N + +L+   F     + +Q L L +C++E ++
Sbjct: 10  TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSF--SNFSELQWLDLSRCEIETIE 67
Query: 97  DRAFRGVTNMDELDLSDNLLST---------------------VPSLIYIPY-----LKS 130
           D+A+ G+ ++  L L+ N + +                     + SL   P      LK 
Sbjct: 68  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 127
Query: 131 INLAHNPIN--QISSYSFQSTPGIRYIDMSNCQIHTI-YSEAFYVMVLPGSNLTLD 183
           +N+AHN I+  ++ +Y F +   + ++D+S   I TI  ++  ++   P  NL+LD
Sbjct: 128 LNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 182

>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX Length = 606

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 32/176 (18%)
Query: 37  TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
           T +C+D+    +P+ I   T+ +DLS N + +L+   F     + +Q L L +C++E ++
Sbjct: 15  TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSF--SNFSELQWLDLSRCEIETIE 72
Query: 97  DRAFRGVTNMDELDLSDNLLST---------------------VPSLIYIPY-----LKS 130
           D+A+ G+ ++  L L+ N + +                     + SL   P      LK 
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132
Query: 131 INLAHNPIN--QISSYSFQSTPGIRYIDMSNCQIHTI-YSEAFYVMVLPGSNLTLD 183
           +N+AHN I+  ++ +Y F +   + ++D+S   I TI  ++  ++   P  NL+LD
Sbjct: 133 LNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187

>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By Binding Of A Tri-acylated Lipopeptide Length = 549

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 43  RNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG 102
           R+F +IP G+    + LDLS N I  +           N+Q L L+  ++  ++  AF  
Sbjct: 15  RSFTSIPSGLTAAMKSLDLSFNKITYIGHGDL--RACANLQVLILKSSRINTIEGDAFYS 72
Query: 103 VTNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNP 137
           + +++ LDLSDN LS++ S  + P   LK +NL  NP
Sbjct: 73  LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 10/152 (6%)
Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  CSC        + C  +   ++P GI      L+L SN +  L   +F +  +T +
Sbjct: 1   CPSRCSCSGTE----IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDK--LTQL 54
Query: 83  QKLYLRKCKLEFVD--DRAFRGVTNMDELDLSDNLLSTVPS-LIYIPYLKSINLAHNPIN 139
            KL L    L F     ++  G T++  LDLS N + T+ S  + +  L+ ++  H+ + 
Sbjct: 55  TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 114
Query: 140 QISSYS-FQSTPGIRYIDMSNCQIHTIYSEAF 170
           Q+S +S F S   + Y+D+S+      ++  F
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  C C      R V+C D     +P+ +  DT +LDL +N I  ++   F    + N+
Sbjct: 25  CPFRCQCHL----RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDF--KNLKNL 78
Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS 121
             L L   K+  +   AF  +  ++ L LS N L  +P 
Sbjct: 79  HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE 117

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  C C      R V+C D     +P+ +  DT +LDL +N I  ++   F    + N+
Sbjct: 25  CPFRCQCHL----RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDF--KNLKNL 78
Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS 121
             L L   K+  +   AF  +  ++ L LS N L  +P 
Sbjct: 79  HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE 117

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 28/139 (20%)
Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM----- 77
           CP  CSC        + C  +   ++P GI      L+L SN +  L   +F ++     
Sbjct: 1   CPSRCSC----SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTK 56
Query: 78  -----------------GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
                             +T +  LYL + KL+ + +  F  +T + EL L  N L +VP
Sbjct: 57  LSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116
Query: 121 SLIY--IPYLKSINLAHNP 137
             I+  +  L+ I L  NP
Sbjct: 117 DGIFDRLTSLQKIWLHTNP 135

>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish Tlr5 Length = 407

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 60  DLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
           DLS + I  L K +F     T++++L L + ++  +DD AF G+T++ EL L  N L +V
Sbjct: 281 DLSKSKIFALLKSVFSHF--TDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSV 338
Query: 120 PSLIY--IPYLKSINLAHNP 137
           P  I+  +  L+ I L  NP
Sbjct: 339 PDGIFDRLTSLQKIWLHTNP 358

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 69  LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV--TNMDELDLSDNLLSTVP--SLIY 124
           L +++  ++  T+IQ L L   +L    +  F G+  TN+ +LDLS N L  V   S  Y
Sbjct: 211 LTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSY 270
Query: 125 IPYLKSINLAHNPINQISSYSFQSTPGIRYIDM 157
           +P L+ ++L +N I ++S  SF     +RY+ +
Sbjct: 271 LPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 28/163 (17%)
Query: 29  CKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLR 88
           C  K G RT  C +     IP+ +   T+VL+ S N +  +Q   F ++   N+  L L 
Sbjct: 7   CTEKEGNRTYNCENLGLREIPDTLPNTTEVLEFSFNFLPTIQNTTFSRL--INLIFLDLT 64
Query: 89  KCKLEFVDDRAFRGVTNMDELDLSDNLL---------------------STVPSLIYIPY 127
           +C++ +V +  F+    ++ + L+ N L                     + + +L +IP 
Sbjct: 65  RCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPV 124
Query: 128 -----LKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
                L+S++L  N I+ I+      T  ++ +D  N  IH I
Sbjct: 125 HNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYI 167

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-38
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-35
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-34
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-29
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-29
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-28
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-16
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-25
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-24
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-21
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-21
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-20
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-14
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-14
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-12
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-12
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-06
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	8e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-04

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  136 bits (344), Expect = 3e-38
 Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 7/159 (4%)

Query: 14  LLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEI 73
           L +  +  SCP  C C        + C  +    +P+ +   T +LDLS NN++ L+ E 
Sbjct: 3   LASGRSVVSCPANCLC----ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEW 58

Query: 74  FLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSI 131
                +TN+  L L    L F+   AF  V N+  LDLS N L T+       +  L+ +
Sbjct: 59  TPT-RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117

Query: 132 NLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
            L +N I  +   +F+    ++ + +S  QI     E  
Sbjct: 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.0 bits (161), Expect = 1e-12
 Identities = 36/183 (19%), Positives = 61/183 (33%), Gaps = 38/183 (20%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM---DELDLSD 113
           +VL L +N+I V+ +  F    +  +QKLYL + ++        +    +     LDLS 
Sbjct: 115 EVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172

Query: 114 NLLSTVP--SLIYIPYLK--SINLAHNPI----------------NQISSYSFQSTP--- 150
           N L  +P   L  +P      + L +NP+                   S   FQ      
Sbjct: 173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCM 232

Query: 151 ------GIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYD 204
                  I  +D  NC  +             G  LT+ C  +     ++  S + +   
Sbjct: 233 HSKKLHNIFSLDFFNCSEYKES----AWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVL 288

Query: 205 HVN 207
              
Sbjct: 289 SQG 291

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  129 bits (325), Expect = 7e-35
 Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 7/173 (4%)

Query: 1   MCHKFILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLD 60
           +  +  +    +   AS    +CP  CSC  +     V C  R    +P+GI  +T+ L+
Sbjct: 24  LTAQVWILCAAIAAAASAGPQNCPSVCSCSNQF--SKVVCTRRGLSEVPQGIPSNTRYLN 81

Query: 61  LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
           L  NNI ++Q + F    + +++ L L +  +  ++  AF G+ +++ L+L DN L+ +P
Sbjct: 82  LMENNIQMIQADTFR--HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139

Query: 121 S--LIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNC-QIHTIYSEAF 170
           S    Y+  L+ + L +NPI  I SY+F   P +  +D+    ++  I   AF
Sbjct: 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 92.9 bits (231), Expect = 9e-22
 Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 3/115 (2%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFVDDRAFRGVTNMDELDLSDNL 115
           + L L +N I  +    F    + ++ +L L +  KLE++ + AF G+ N+  L+L    
Sbjct: 150 RELWLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207

Query: 116 LSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
           +  +P+L  +  L+ + ++ N   +I   SF     ++ + + N Q+  I   AF
Sbjct: 208 IKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF 262

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 78.2 bits (193), Expect = 1e-16
 Identities = 38/207 (18%), Positives = 82/207 (39%), Gaps = 33/207 (15%)

Query: 44  NFYTIPEGIDLDT-QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG 102
           N   +P    L   + L++S N+   ++   F  +  ++++KL++   ++  ++  AF G
Sbjct: 207 NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGL--SSLKKLWVMNSQVSLIERNAFDG 264

Query: 103 VTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPI--------------NQISSYSF 146
           + ++ EL+L+ N LS++P  ++  + YL  ++L HNP                 I + S 
Sbjct: 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNST 324

Query: 147 Q----STPG------IRYIDMSN--CQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRI 194
                  P       +  +D ++  C    I      + +  G    L CR    +   +
Sbjct: 325 CCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRTPPMS--SV 382

Query: 195 MWSINRKIYDHVNWNSNKINIKEETVL 221
            W +             +I++  +  L
Sbjct: 383 KWLLPNGTVLSHASRHPRISVLNDGTL 409

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.4 bits (183), Expect = 2e-15
 Identities = 19/117 (16%), Positives = 53/117 (45%), Gaps = 7/117 (5%)

Query: 57  QVLDLSSNN-INVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
             LDL     +  + +  F   G+ N++ L L  C ++ + +     +  ++EL++S N 
Sbjct: 174 MRLDLGELKKLEYISEGAFE--GLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNH 229

Query: 116 LSTVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
              +   S   +  LK + + ++ ++ I   +F     +  +++++  + ++  + F
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF 286

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  126 bits (318), Expect = 7e-34
 Identities = 53/170 (31%), Positives = 94/170 (55%), Gaps = 8/170 (4%)

Query: 5   FILSVFLLTLLASVTQA-SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSS 63
            +LSV L+  +A    A +CP  CSC  +     V C+ +N   +P+GI  +T++L+L  
Sbjct: 16  SLLSVLLMGCVAETGSAQTCPSVCSCSNQF--SKVICVRKNLREVPDGISTNTRLLNLHE 73

Query: 64  NNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS-- 121
           N I +++   F  +   +++ L L +  +  ++  AF G+ N++ L+L DN L+T+P+  
Sbjct: 74  NQIQIIKVNSFKHL--RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGA 131

Query: 122 LIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNC-QIHTIYSEAF 170
            +Y+  LK + L +NPI  I SY+F   P +R +D+    ++  I   AF
Sbjct: 132 FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 91.0 bits (226), Expect = 4e-21
 Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 3/115 (2%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFVDDRAFRGVTNMDELDLSDNL 115
           + L L +N I  +    F    I ++++L L +  +L ++ + AF G++N+  L+L+   
Sbjct: 139 KELWLRNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196

Query: 116 LSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
           L  +P+L  +  L  ++L+ N ++ I   SFQ    ++ + M   QI  I   AF
Sbjct: 197 LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 83.3 bits (206), Expect = 2e-18
 Identities = 39/207 (18%), Positives = 81/207 (39%), Gaps = 32/207 (15%)

Query: 44  NFYTIPEGIDLDT-QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG 102
           N   IP    L     LDLS N+++ ++   F  +   ++QKL++ + +++ ++  AF  
Sbjct: 196 NLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL--MHLQKLWMIQSQIQVIERNAFDN 253

Query: 103 VTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP-------------INQISSYSFQ 147
           + ++ E++L+ N L+ +P  ++  + +L+ I+L HNP             I  ++  +  
Sbjct: 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTA 313

Query: 148 STPG-----------IRYIDMSN--CQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRI 194
                          I  +D +   C    I      + V  G    L CR  ++    +
Sbjct: 314 CCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRASTSLT-SV 372

Query: 195 MWSINRKIYDHVNWNSNKINIKEETVL 221
            W               +I +  +  L
Sbjct: 373 SWITPNGTVMTHGAYKVRIAVLSDGTL 399

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 76.3 bits (188), Expect = 4e-16
 Identities = 31/151 (20%), Positives = 64/151 (42%), Gaps = 25/151 (16%)

Query: 57  QVLDLSSNN-INVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
           + LDL     ++ + +  F   G++N++ L L  C L  +       +  +DELDLS N 
Sbjct: 163 RRLDLGELKRLSYISEGAF--EGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNH 218

Query: 116 LSTVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
           LS +   S   + +L+ + +  + I  I   +F +   +  I++++  +  +  + F  +
Sbjct: 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278

Query: 174 VLPGSNLT--------LDCRVQSATPCRIMW 196
                +L          +C       C I+W
Sbjct: 279 ----HHLERIHLHHNPWNCN------CDILW 299

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  117 bits (294), Expect = 3e-30
 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 6/151 (3%)

Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
            CP  C C  +   R V C  + F  +PEGI  +T++LDL  N I  L ++ F      +
Sbjct: 2   GCPPRCECSAQD--RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASF--PH 57

Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIN 139
           +++L L +  +  V+  AF  + N+  L L  N L  +P      +  L  ++++ N I 
Sbjct: 58  LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117

Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
            +  Y FQ    ++ +++ +  +  I   AF
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAF 148

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 85.9 bits (213), Expect = 3e-19
 Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 5/122 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             LD+S N I +L   +F    + N++ L +    L ++  RAF G+ ++++L L    L
Sbjct: 107 TKLDISENKIVILLDYMF--QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164

Query: 117 STVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMS-NCQIHTIYSEAFYVM 173
           +++P  +L ++  L  + L H  IN I  YSF+    ++ +++S    + T+     Y +
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224

Query: 174 VL 175
            L
Sbjct: 225 NL 226

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 78.6 bits (194), Expect = 8e-17
 Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 10/139 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           +VL++S            L     N+  L +  C L  V   A R +  +  L+LS N +
Sbjct: 203 KVLEISHWPYLDTMTPNCLYG--LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260

Query: 117 STVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF---- 170
           ST+    L  +  L+ I L    +  +  Y+F+    +R +++S  Q+ T+    F    
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320

Query: 171 --YVMVLPGSNLTLDCRVQ 187
               ++L  + L  DCR+ 
Sbjct: 321 NLETLILDSNPLACDCRLL 339

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 77.8 bits (192), Expect = 1e-16
 Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 28/140 (20%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT------------ 104
           + L L   N+  +  E    +    +  L LR   +  + D +F+ +             
Sbjct: 155 EQLTLEKCNLTSIPTEALSHL--HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212

Query: 105 ------------NMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPINQISSYSFQSTP 150
                       N+  L ++   L+ VP   + ++ YL+ +NL++NPI+ I         
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272

Query: 151 GIRYIDMSNCQIHTIYSEAF 170
            ++ I +   Q+  +   AF
Sbjct: 273 RLQEIQLVGGQLAVVEPYAF 292

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 70.1 bits (172), Expect = 6e-14
 Identities = 26/209 (12%), Positives = 59/209 (28%), Gaps = 58/209 (27%)

Query: 53  DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112
            L+   L ++  N+  +       +    ++ L L    +  ++      +  + E+ L 
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHL--VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280

Query: 113 DNLLSTVPS--LIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMS------NCQI-- 162
              L+ V       + YL+ +N++ N +  +    F S   +  + +       +C++  
Sbjct: 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLW 340

Query: 163 ---------------------------------------------HTIYSEAFYVMVLPG 177
                                                             +A  V V  G
Sbjct: 341 VFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEG 400

Query: 178 SNLTLDCRVQSATPCRIMW-SINRKIYDH 205
             +   CR     P  I+W S  + +   
Sbjct: 401 HTVQFVCRADGDPPPAILWLSPRKHLVSA 429

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  112 bits (282), Expect = 2e-29
 Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 9/152 (5%)

Query: 21  ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
             CP  C C      R V+C D     +P+ +  DT +LDL +N I  ++   F    + 
Sbjct: 23  PVCPFRCQC----HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFK--NLK 76

Query: 81  NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQ 140
           N+  L L   K+  +   AF  +  ++ L LS N L  +P  +    L+ + +  N I +
Sbjct: 77  NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-KTLQELRVHENEITK 135

Query: 141 ISSYSFQSTPGIRYIDMSNCQIHT--IYSEAF 170
           +    F     +  +++    + +  I + AF
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.1 bits (206), Expect = 1e-18
 Identities = 23/117 (19%), Positives = 56/117 (47%), Gaps = 5/117 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE--FVDDRAFRGVTNMDELDLSDN 114
           Q L +  N I  ++K +F   G+  +  + L    L+   +++ AF+G+  +  + ++D 
Sbjct: 124 QELRVHENEITKVRKSVFN--GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181

Query: 115 LLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
            ++T+P  +  P L  ++L  N I ++ + S +    +  + +S   I  + + +  
Sbjct: 182 NITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.8 bits (200), Expect = 7e-18
 Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 11/133 (8%)

Query: 47  TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
           TIP+G+      L L  N I  +        G+ N+ KL L    +  VD+ +     ++
Sbjct: 185 TIPQGLPPSLTELHLDGNKITKVDAASLK--GLNNLAKLGLSFNSISAVDNGSLANTPHL 242

Query: 107 DELDLSDNLLSTVPS-LIYIPYLKSINLAHNPINQISSYSFQST------PGIRYIDMSN 159
            EL L++N L  VP  L    Y++ + L +N I+ I S  F              + + +
Sbjct: 243 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

Query: 160 CQIHT--IYSEAF 170
             +    I    F
Sbjct: 303 NPVQYWEIQPSTF 315

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGI----TNIQKLYLR--KCKLEFVDDRAFRGVTNMDELD 110
           QV+ L +NNI+ +    F   G      +   + L     +   +    FR V     + 
Sbjct: 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 325

Query: 111 LSDN 114
           L + 
Sbjct: 326 LGNY 329

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  110 bits (278), Expect = 3e-29
 Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 6/151 (3%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  C C     K T  C  +    +P GI   +Q + L  N I+ +    F      N+
Sbjct: 2   CPGACVCY-NEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASF--RACRNL 58

Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL-LSTVPS--LIYIPYLKSINLAHNPIN 139
             L+L    L  +D  AF G+  +++LDLSDN  L +V       +  L +++L    + 
Sbjct: 59  TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
           ++    F+    ++Y+ + +  +  +  + F
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 83.1 bits (206), Expect = 6e-19
 Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 4/116 (3%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L L    +  L   +F  +    +Q LYL+   L+ + D  FR + N+  L L  N +
Sbjct: 108 HTLHLDRCGLQELGPGLFRGL--AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165

Query: 117 STVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
           S+VP  +   +  L  + L  N +  +  ++F+    +  + +    +  + +EA 
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 221

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.6 bits (171), Expect = 4e-14
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L L  N I+ + +  F   G+ ++ +L L + ++  V   AFR +  +  L L  N L
Sbjct: 156 THLFLHGNRISSVPERAF--RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 117 STVPSLIY--IPYLKSINLAHNPIN 139
           S +P+     +  L+ + L  NP  
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
                   L  VP  I     + I L  N I+ + + SF++   +  + + +  +  I +
Sbjct: 15  TTSCPQQGLQAVPVGIP-AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73

Query: 168 EAFY 171
            AF 
Sbjct: 74  AAFT 77

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  111 bits (280), Expect = 4e-29
 Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 9/161 (5%)

Query: 12  LTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQK 71
           L  L     A CP GC C      R V+C D     +P+ I  DT +LDL +N+I+ L+K
Sbjct: 16  LDSLPPTYSAMCPFGCHCH----LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRK 71

Query: 72  EIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSI 131
           + F   G+ ++  L L   K+  + ++AF  +  + +L +S N L  +P  +    L  +
Sbjct: 72  DDFK--GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP-SSLVEL 128

Query: 132 NLAHNPINQISSYSFQSTPGIRYIDMSNCQIH--TIYSEAF 170
            +  N I ++    F     +  I+M    +        AF
Sbjct: 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 81.6 bits (202), Expect = 4e-18
 Identities = 26/136 (19%), Positives = 52/136 (38%), Gaps = 11/136 (8%)

Query: 44  NFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103
               IP+ +      L L  N I  ++ E  L    + + +L L   ++  +++ +   +
Sbjct: 183 KLTGIPKDLPETLNELHLDHNKIQAIELEDLL--RYSKLYRLGLGHNQIRMIENGSLSFL 240

Query: 104 TNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQST------PGIRYID 156
             + EL L +N LS VP+ +  +  L+ + L  N I ++    F              I 
Sbjct: 241 PTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300

Query: 157 MSNCQI--HTIYSEAF 170
           + N  +    +    F
Sbjct: 301 LFNNPVPYWEVQPATF 316

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.4 bits (191), Expect = 1e-16
 Identities = 19/140 (13%), Positives = 52/140 (37%), Gaps = 10/140 (7%)

Query: 47  TIPEGI--DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT 104
               G    L    L +S   +  + K++        + +L+L   K++ ++       +
Sbjct: 163 GFEPGAFDGLKLNYLRISEAKLTGIPKDLP-----ETLNELHLDHNKIQAIELEDLLRYS 217

Query: 105 NMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQI 162
            +  L L  N +  +   SL ++P L+ ++L +N ++++ +        ++ + +    I
Sbjct: 218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNI 276

Query: 163 HTIYSEAFYVMVLPGSNLTL 182
             +    F  +         
Sbjct: 277 TKVGVNDFCPVGFGVKRAYY 296

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 69.3 bits (170), Expect = 8e-14
 Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 13/115 (11%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L L  N I +++        +  +++L+L   KL  V       +  +  + L  N +
Sbjct: 220 YRLGLGHNQIRMIENGSL--SFLPTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNI 276

Query: 117 STVPS--------LIYIPYLKSINLAHNPI--NQISSYSFQSTPGIRYIDMSNCQ 161
           + V           +   Y   I+L +NP+   ++   +F+       I   N +
Sbjct: 277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  107 bits (269), Expect = 9e-28
 Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 10/152 (6%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  CSC        + C  +   ++P GI      L+L SN +  L   +F    +T +
Sbjct: 1   CPSRCSCS----GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFD--KLTQL 54

Query: 83  QKLYLRKCKLEFVD--DRAFRGVTNMDELDLSDNLLSTVPS-LIYIPYLKSINLAHNPIN 139
            KL L    L F     ++  G T++  LDLS N + T+ S  + +  L+ ++  H+ + 
Sbjct: 55  TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 114

Query: 140 QISSYS-FQSTPGIRYIDMSNCQIHTIYSEAF 170
           Q+S +S F S   + Y+D+S+      ++  F
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.3 bits (209), Expect = 3e-19
 Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 16/148 (10%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEFVDDRAFRGVTNMDELDLSDNL 115
             LD+S  +  V    IF   G+++++ L +      E      F  + N+  LDLS   
Sbjct: 129 IYLDISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186

Query: 116 LSTVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
           L  +   +   +  L+ +N++HN    + ++ ++    ++ +D S   I T   +     
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246

Query: 174 VLPGSNLTL-----DCRVQSATPCRIMW 196
               + L L      C       C    
Sbjct: 247 PSSLAFLNLTQNDFACT------CEHQS 268

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 75.4 bits (186), Expect = 4e-16
 Identities = 17/117 (14%), Positives = 49/117 (41%), Gaps = 4/117 (3%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN-L 115
           + LD   +N+  + +       + N+  L +         +  F G+++++ L ++ N  
Sbjct: 104 EHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162

Query: 116 LSTVPS--LIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
                      +  L  ++L+   + Q+S  +F S   ++ ++MS+    ++ +  +
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  101 bits (253), Expect = 4e-26
 Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 25/186 (13%)

Query: 21  ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
            +CP  C C+      TV+C ++    IPE I   T  L L++N   VL+     +  + 
Sbjct: 3   LACPEKCRCEGT----TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFK-KLP 57

Query: 81  NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPI 138
            ++K+     K+  +++ AF G + ++E+ L+ N L  V   ++  +  LK++ L  N I
Sbjct: 58  QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117

Query: 139 NQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLT--------LDCRVQSAT 190
             + + SF     +R + + + QI T+   AF  +     +L+         +C      
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL----HSLSTLNLLANPFNCN----- 168

Query: 191 PCRIMW 196
            C + W
Sbjct: 169 -CYLAW 173

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  105 bits (264), Expect = 6e-26
 Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 6/152 (3%)

Query: 21  ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
            S    C  K     +T  C +     IP  +   T+ L+ S N +  +Q   F ++   
Sbjct: 2   TSSDQKCIEKEVN--KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRL--I 57

Query: 81  NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPI 138
           N+  L L +C++ ++ +  F+    +D L L+ N L  +   +L     LK +      I
Sbjct: 58  NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117

Query: 139 NQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
           + I      +   +  + + +  I +I     
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKG 149

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.4 bits (204), Expect = 5e-18
 Identities = 23/137 (16%), Positives = 55/137 (40%), Gaps = 6/137 (4%)

Query: 43  RNFYTIPEGIDLDT----QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR 98
           +N   I +G+   T     +      +   +   +F  +   +++ + L+K     +   
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272

Query: 99  AFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDM 157
            F   + + ELDL+   LS +PS +  +  LK + L+ N    +   S  + P + ++ +
Sbjct: 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332

Query: 158 S-NCQIHTIYSEAFYVM 173
             N +   + +     +
Sbjct: 333 KGNTKRLELGTGCLENL 349

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.4 bits (204), Expect = 5e-18
 Identities = 25/134 (18%), Positives = 58/134 (43%), Gaps = 10/134 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           ++LDL+   + V   +   Q  +  ++ L L    L+   ++ F G+  +  L+L  N  
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQ-NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461

Query: 117 STVP-----SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
                    SL  +  L+ + L+   ++ I  ++F S   + ++D+S+ ++ +   EA  
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS 521

Query: 172 VMVLPGSNLTLDCR 185
            +      + L+  
Sbjct: 522 HL----KGIYLNLA 531

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 22/112 (19%), Positives = 48/112 (42%), Gaps = 3/112 (2%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + LDLS ++I            ++++Q L L   +   +   AF+    ++ LDL+   L
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412

Query: 117 STVPS---LIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
               +      +  LK +NL+H+ ++  S   F   P ++++++        
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.7 bits (184), Expect = 2e-15
 Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 7/119 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAFRGVTNMDELDLSDNL 115
           + L LS+N    L +         ++  L ++   K   +       + N+ ELDLS + 
Sbjct: 304 KKLVLSANKFENLCQISASNF--PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361

Query: 116 LSTVP----SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
           + T       L  + +L+S+NL++N    + + +F+  P +  +D++  ++    +++ 
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 4/110 (3%)

Query: 57  QVLDLSSNNINVLQKEIFLQ-MGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
           Q L+L  N+      +       +  ++ L L  C L  +D  AF  +  M+ +DLS N 
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511

Query: 116 LSTVPSLIYIPYLKS--INLAHNPINQISSYSFQSTPGIRYIDMSNCQIH 163
           L++      + +LK   +NLA N I+ I           R I++    + 
Sbjct: 512 LTSSSIEA-LSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 15/144 (10%), Positives = 43/144 (29%), Gaps = 28/144 (19%)

Query: 54  LDTQVLDLSSNNINVLQKEIFLQM-----------------------GITNIQKLYLRKC 90
                L+L+ N+I  ++   F                           I ++        
Sbjct: 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

Query: 91  KLEFVDDRAFRGVTNMD--ELDLSDNLLSTVP--SLIYIPYLKSINLAHNPINQISSYSF 146
             E +    F G+  M    ++L  +    +   +      L+ ++L    ++++ S   
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GL 297

Query: 147 QSTPGIRYIDMSNCQIHTIYSEAF 170
                ++ + +S  +   +   + 
Sbjct: 298 VGLSTLKKLVLSANKFENLCQISA 321

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 17/113 (15%), Positives = 36/113 (31%), Gaps = 7/113 (6%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + L      I+ +            ++ LYL    +  +          +  LD  +N +
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQ--KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165

Query: 117 STVP--SLIYIPYLK--SINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
             +    +  +      S+NL  N I  I   +F S    + ++    Q   +
Sbjct: 166 HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLV 217

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.8 bits (148), Expect = 8e-11
 Identities = 23/120 (19%), Positives = 35/120 (29%), Gaps = 7/120 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           +VLD  +N I+ L KE    +       L L    +  ++  AF        L+      
Sbjct: 156 KVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN 214

Query: 117 STVP----SLIYIPYLKSINLAHNPINQISSYSFQSTPG--IRYIDMSNCQIHTIYSEAF 170
             V         I  L            IS   F+      +  I++       I S  F
Sbjct: 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF 274

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 11/64 (17%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
             +  +  L+ +P  +     + +  + N +  I + +F     + ++D++ CQI+ I+ 
Sbjct: 16  TYNCENLGLNEIPGTLP-NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74

Query: 168 EAFY 171
           + F 
Sbjct: 75  DTFQ 78

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 5/94 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             +DLS N +     E    +       L L    +  +       ++    ++L  N L
Sbjct: 503 NHVDLSHNRLTSSSIEALSHL---KGIYLNLASNHISIILPSLLPILSQQRTINLRQNPL 559

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTP 150
               S   I +L+        +        ++ P
Sbjct: 560 DCTCSN--IYFLEWYKENMQKLEDTEDTLCENPP 591

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score =  102 bits (254), Expect = 2e-25
 Identities = 31/201 (15%), Positives = 66/201 (32%), Gaps = 28/201 (13%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQV--LDLSSNN-INVLQKEIFLQMGI 79
           CP  C      G   + C           +     +  L + +   +  L+      +  
Sbjct: 1   CPDACCPH---GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGL-- 55

Query: 80  TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP-SLIYIPYLKSINLAHNPI 138
             ++ L + K  L FV   AF     +  L+LS N L ++    +    L+ + L+ NP+
Sbjct: 56  GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

Query: 139 N-------------------QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSN 179
           +                               + ++  ++C + T+  +     V  G +
Sbjct: 116 HCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDD 175

Query: 180 LTLDCRVQSATPCRIMWSINR 200
           + L C+V+     +  W +  
Sbjct: 176 VLLRCQVEGRGLEQAGWILTE 196

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 97.3 bits (243), Expect = 3e-24
 Identities = 40/185 (21%), Positives = 80/185 (43%), Gaps = 34/185 (18%)

Query: 27  CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
                     T +C++ NFY IP+ +   T+ LDLS N +  L    F       +Q L 
Sbjct: 5   EVV----PNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLD 58

Query: 87  LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNPI------ 138
           L +C+++ ++D A++ ++++  L L+ N + ++       +  L+ +      +      
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

Query: 139 ---------------NQISSY----SFQSTPGIRYIDMSNCQIHTIYSEAFYVMV-LPGS 178
                          N I S+     F +   + ++D+S+ +I +IY     V+  +P  
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 179 NLTLD 183
           NL+LD
Sbjct: 179 NLSLD 183

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 57  QVLDLSSNNINVLQKEIF--LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
           + LDLSSN I  +       L         L L    + F+   AF+    + EL L  N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTN 210

Query: 115 LLSTVPSLIY--IPYLKSINLAHNP 137
            L +VP  I+  +  L+ I L  NP
Sbjct: 211 QLKSVPDGIFDRLTSLQKIWLHTNP 235

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 97.9 bits (244), Expect = 6e-24
 Identities = 37/170 (21%), Positives = 70/170 (41%), Gaps = 9/170 (5%)

Query: 5   FILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSN 64
           +++ V  + +  S  ++S     SC         +    +  +IP G+    + LDLS+N
Sbjct: 6   WMVWVLGVIISLSKEESSNQASLSC---DRNGICKGSSGSLNSIPSGLTEAVKSLDLSNN 62

Query: 65  NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--L 122
            I  +           N+Q L L    +  +++ +F  + +++ LDLS N LS + S   
Sbjct: 63  RITYISNSDLQ--RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWF 120

Query: 123 IYIPYLKSINLAHNPINQISSYS-FQSTPGIRYIDMSNC-QIHTIYSEAF 170
             +  L  +NL  NP   +   S F     ++ + + N      I  + F
Sbjct: 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.5 bits (173), Expect = 3e-14
 Identities = 18/124 (14%), Positives = 48/124 (38%), Gaps = 13/124 (10%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + L++ ++++   + +      I N+  L L   +   + +      ++++ L+L D  L
Sbjct: 177 EELEIDASDLQSYEPKSL--KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234

Query: 117 STVP----------SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY 166
            T            SLI     +++ +    + Q+         G+  ++ S  Q+ ++ 
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK-LLNQISGLLELEFSRNQLKSVP 293

Query: 167 SEAF 170
              F
Sbjct: 294 DGIF 297

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 63.6 bits (155), Expect = 8e-12
 Identities = 19/112 (16%), Positives = 42/112 (37%), Gaps = 4/112 (3%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFVDDRAFRGVTNMDELDLSDNL 115
             L+L  N    L +       +T +Q L +        +  + F G+T ++EL++  + 
Sbjct: 127 TFLNLLGNPYKTLGETSLFS-HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185

Query: 116 LSTVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           L +    SL  I  +  + L       +       T  +  +++ +  + T 
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 11/112 (9%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK--------CKLEFVDDRAFRGVTNMDE 108
             L L      +L +        ++++ L LR          +L   +  +         
Sbjct: 201 SHLILHMKQHILLLEIFVD--VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258

Query: 109 LDLSDNLLSTVPSLI-YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSN 159
           + ++D  L  V  L+  I  L  +  + N +  +    F     ++ I +  
Sbjct: 259 VKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 54  LDTQVLDLSSNNINVLQKEIFLQ-MGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112
           L+ +  DL + + + L        +     + + +    L F   +    ++ + EL+ S
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL-FQVMKLLNQISGLLELEFS 285

Query: 113 DNLLSTVPSLIY--IPYLKSINLAHNPIN 139
            N L +VP  I+  +  L+ I L  NP +
Sbjct: 286 RNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 99.0 bits (247), Expect = 1e-23
 Identities = 29/145 (20%), Positives = 69/145 (47%), Gaps = 8/145 (5%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
            P            T +C+D+    +P+ I   T+ +DLS N + +L+   F     + +
Sbjct: 5   NPCIEVVP----NITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNF--SEL 58

Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPINQ 140
           Q L L +C++E ++D+A+ G+ ++  L L+ N + +    S   +  L+++      +  
Sbjct: 59  QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118

Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTI 165
           + S+       ++ +++++  IH+ 
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSC 143

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 77.4 bits (191), Expect = 2e-16
 Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 4/112 (3%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             LDLS N ++      +  +G  +++ L L       +    F G+  +  LD   + L
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA-NFMGLEELQHLDFQHSTL 411

Query: 117 STVPSLIYI---PYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
             V           L  +++++          F     +  + M+       
Sbjct: 412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 76.2 bits (188), Expect = 6e-16
 Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 9/121 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L L+ N I       F  +  T+++ L   + KL  ++      +  + +L+++ N +
Sbjct: 83  SNLILTGNPIQSFSPGSFSGL--TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 140

Query: 117 STVPSLIYI---PYLKSINLAHNPINQISSYSFQS----TPGIRYIDMSNCQIHTIYSEA 169
            +     Y      L  ++L++N I  I+    Q           +DMS   I  I  +A
Sbjct: 141 HSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200

Query: 170 F 170
           F
Sbjct: 201 F 201

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.8 bits (187), Expect = 8e-16
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 5/120 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL-EFVDDRAFRGVTNMDELDLSDNL 115
             LD+S  N  +    IFL +  T++  L +      +      F   TN+  LDLS   
Sbjct: 427 LYLDISYTNTKIDFDGIFLGL--TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484

Query: 116 LSTVPSLI--YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
           L  +   +   +  L+ +N++HN +  + S  +     +  +D S  +I T      +  
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP 544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 74.3 bits (183), Expect = 3e-15
 Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 3/111 (2%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L ++ N+              TN+  L L KC+LE +    F  +  +  L++S N L
Sbjct: 451 NTLKMAGNSFKDNTLSNVFA-NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509

Query: 117 STVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
             + S  Y  +  L +++ + N I             + + +++N  +  I
Sbjct: 510 LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.4 bits (178), Expect = 1e-14
 Identities = 19/117 (16%), Positives = 46/117 (39%), Gaps = 4/117 (3%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           Q LD   + +  + +       +  +  L +     +   D  F G+T+++ L ++ N  
Sbjct: 402 QHLDFQHSTLKRVTEFSAFL-SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 117 STVP---SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
                         L  ++L+   + QIS   F +   ++ ++MS+  +  + S  +
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.7 bits (171), Expect = 9e-14
 Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 10/116 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             + L+  +I  L+            Q L + +C+L+         +  +  L L+ N  
Sbjct: 288 SAMSLAGVSIKYLEDVPKH----FKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKG 340

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQ--STPGIRYIDMSNCQIHTIYSEAF 170
           S     + +P L  ++L+ N ++     S+    T  +R++D+S      + S  F
Sbjct: 341 SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANF 395

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.7 bits (166), Expect = 5e-13
 Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 7/124 (5%)

Query: 53  DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112
           D+      L+  N        F  +   N+  + L    +++++D           L + 
Sbjct: 260 DVTIDEFRLTYTNDFSDDIVKFHCL--ANVSAMSLAGVSIKYLEDVPKH--FKWQSLSII 315

Query: 113 DNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYV 172
              L   P+L  +P+LKS+ L  N  +    +   + P + Y+D+S   +      ++  
Sbjct: 316 RCQLKQFPTL-DLPFLKSLTLTMNKGSIS--FKKVALPSLSYLDLSRNALSFSGCCSYSD 372

Query: 173 MVLP 176
           +   
Sbjct: 373 LGTN 376

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 13/121 (10%), Positives = 38/121 (31%), Gaps = 9/121 (7%)

Query: 56  TQVLDLSSN------NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDEL 109
             V  L         N+ + +  I   +    I +  L        D   F  + N+  +
Sbjct: 231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290

Query: 110 DLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
            L+   +  +  +      +S+++    + Q         P ++ + ++  +    + + 
Sbjct: 291 SLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKGSISFKKV 347

Query: 170 F 170
            
Sbjct: 348 A 348

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 10/115 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD-DRAFRGVTNMDELDLSDNL 115
           + L      +  L+     Q+    ++KL +    +        F  +TN+  +DLS N 
Sbjct: 107 ENLVAVETKLASLESFPIGQL--ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164

Query: 116 LSTVPSLI------YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHT 164
           + T+                S++++ NPI+ I   +FQ    +  + +      +
Sbjct: 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSS 218

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 21/151 (13%), Positives = 39/151 (25%), Gaps = 38/151 (25%)

Query: 57  QVLDLSSNNINVLQKEIF--LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
             +DLS N I  +       L+        L +    ++F+ D+AF+G   + EL L  N
Sbjct: 156 VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGN 214

Query: 115 LLSTVPSLIYIPYLKS-----------------------------------INLAHNPIN 139
             S+      +  L                                       L +    
Sbjct: 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDF 274

Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
                 F     +  + ++   I  +     
Sbjct: 275 SDDIVKFHCLANVSAMSLAGVSIKYLEDVPK 305

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 14/111 (12%), Positives = 42/111 (37%), Gaps = 9/111 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           Q+L++S NN+  L    + Q+   ++  L     ++E           ++   +L++N +
Sbjct: 500 QLLNMSHNNLLFLDSSHYNQL--YSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPG-----IRYIDMSNCQI 162
           + +       +L+ +      +  +   +  +        +   + S C +
Sbjct: 558 ACICEH--QKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFNNSTCYM 606

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.0 bits (125), Expect = 7e-08
 Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 109 LDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSE 168
               D  LS VP  I     K+I+L+ NP+  + SYSF +   ++++D+S C+I TI  +
Sbjct: 16  YQCMDQKLSKVPDDIP-SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK 74

Query: 169 AFY 171
           A++
Sbjct: 75  AWH 77

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 93.2 bits (232), Expect = 4e-23
 Identities = 35/183 (19%), Positives = 72/183 (39%), Gaps = 20/183 (10%)

Query: 21  ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
             CP  C+C        V+C  +    IP  +      + L  N I V+    F      
Sbjct: 3   LHCPAACTCS----NNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAF--SPYK 56

Query: 81  NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPI 138
            ++++ L   ++  +   AF+G+ +++ L L  N ++ +P  ++  +  L+ + L  N I
Sbjct: 57  KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI 116

Query: 139 NQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTL-----DCRVQSATPCR 193
           N +   +FQ    +  + + + ++ TI    F  +      + L      C       C 
Sbjct: 117 NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR-AIQTMHLAQNPFICD------CH 169

Query: 194 IMW 196
           + W
Sbjct: 170 LKW 172

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 93.6 bits (233), Expect = 7e-22
 Identities = 27/141 (19%), Positives = 66/141 (46%), Gaps = 6/141 (4%)

Query: 27  CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
           C         T +C++ NFY IP+ +   T+ LDLS N +  L    F       +Q L 
Sbjct: 3   CVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSF--PELQVLD 58

Query: 87  LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPINQISSY 144
           L +C+++ ++D A++ ++++  L L+ N + ++       +  L+ +      +  + ++
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

Query: 145 SFQSTPGIRYIDMSNCQIHTI 165
                  ++ +++++  I + 
Sbjct: 119 PIGHLKTLKELNVAHNLIQSF 139

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.8 bits (192), Expect = 2e-16
 Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 8/139 (5%)

Query: 36  RTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFV 95
           + +E ++  F   P       + L  +SN       E+ L     +++ L L +  L F 
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL----PSLEFLDLSRNGLSFK 362

Query: 96  D--DRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYS-FQSTPG 151
               ++  G T++  LDLS N + T+ S    +  L+ ++  H+ + Q+S +S F S   
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 152 IRYIDMSNCQIHTIYSEAF 170
           + Y+D+S+      ++  F
Sbjct: 423 LIYLDISHTHTRVAFNGIF 441

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.1 bits (190), Expect = 3e-16
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 9/121 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L L+ N I  L    F   G++++QKL   +  L  +++     +  + EL+++ NL+
Sbjct: 79  STLILTGNPIQSLALGAFS--GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 117 STVP---SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRY----IDMSNCQIHTIYSEA 169
            +         +  L+ ++L+ N I  I     +    +      +D+S   ++ I   A
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 170 F 170
           F
Sbjct: 197 F 197

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 73.6 bits (181), Expect = 5e-15
 Identities = 18/117 (15%), Positives = 50/117 (42%), Gaps = 4/117 (3%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + LD   +N+  + +       + N+  L +         +  F G+++++ L ++ N  
Sbjct: 399 EHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

Query: 117 STVPS---LIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
                      +  L  ++L+   + Q+S  +F S   ++ ++M++ Q+ ++    F
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 73.2 bits (180), Expect = 7e-15
 Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 5/110 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL-EFVDDRAFRGVTNMDELDLSDNL 115
             LD+S  +  V    IF  +  ++++ L +      E      F  + N+  LDLS   
Sbjct: 424 IYLDISHTHTRVAFNGIFNGL--SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 116 LSTVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIH 163
           L  +   +   +  L+ +N+A N +  +    F     ++ I +      
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.6 bits (155), Expect = 1e-11
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 9/116 (7%)

Query: 55  DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
           +     L S  I  ++   +        Q L L  CK         +   ++  L  + N
Sbjct: 283 NVSSFSLVSVTIERVKDFSYN----FGWQHLELVNCKFGQFPTLKLK---SLKRLTFTSN 335

Query: 115 LLSTVPSLIYIPYLKSINLAHNPINQIS--SYSFQSTPGIRYIDMSNCQIHTIYSE 168
                 S + +P L+ ++L+ N ++     S S   T  ++Y+D+S   + T+ S 
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 22/115 (19%), Positives = 48/115 (41%), Gaps = 10/115 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD-RAFRGVTNMDELDLSDNL 115
           Q L     N+  L+      +    +++L +    ++       F  +TN++ LDLS N 
Sbjct: 103 QKLVAVETNLASLENFPIGHL--KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 116 LSTVP--SLIYIPYLK----SINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHT 164
           + ++    L  +  +     S++L+ NP+N I   +F+    +  + + N     
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSL 214

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.0 bits (125), Expect = 6e-08
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             LDLS   +  L    F    ++++Q L +   +L+ V D  F  +T++ ++ L  N  
Sbjct: 473 TFLDLSQCQLEQLSPTAF--NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

Query: 117 STVPSLI 123
                 I
Sbjct: 531 DCSCPRI 537

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 15/124 (12%)

Query: 59  LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF-VDDRAFRGVTNMDELDLSDNLLS 117
           LDLS N +N +Q   F ++    + KL LR       V     +G+  ++   L      
Sbjct: 182 LDLSLNPMNFIQPGAFKEI---RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 118 TVPSLIYIPY-----LKSINLAHNPINQISSYS------FQSTPGIRYIDMSNCQIHTIY 166
              +L          L ++ +    +  +  Y       F     +    + +  I  + 
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 167 SEAF 170
             ++
Sbjct: 299 DFSY 302

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 7e-06
 Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 14/131 (10%)

Query: 47  TIPEGI--DLDTQVLDLSSNNINV-LQKEIFLQMGITNIQKLYLRK----CKLEFVDDRA 99
            I  G   ++    L L +N  ++ + K     +    + +L L +      LE  D  A
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 100 FRGVTNMDELDLSDNLLSTVPSLIY-----IPYLKSINLAHNPINQISSYSFQSTPGIRY 154
             G+ N+   +     L      I      +  + S +L    I ++  +S+    G ++
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF--GWQH 308

Query: 155 IDMSNCQIHTI 165
           +++ NC+    
Sbjct: 309 LELVNCKFGQF 319

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 8e-06
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 110 DLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
              +     +P  +     K+++L+ NP+  + SYSF S P ++ +D+S C+I TI   A
Sbjct: 13  QCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71

Query: 170 FY 171
           + 
Sbjct: 72  YQ 73

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 91.4 bits (227), Expect = 1e-21
 Identities = 30/154 (19%), Positives = 59/154 (38%), Gaps = 12/154 (7%)

Query: 23  CPLG-CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
           C    C C      R   C +     IP  +  +   L      + V+QK  F   G  +
Sbjct: 2   CHHRICHCS----NRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAF--SGFGD 55

Query: 82  IQKLYLRKCK-LEFVDDRAFRGVTNMDELDLSD-NLLSTVPS--LIYIPYLKSINLAHNP 137
           ++K+ + +   LE ++   F  +  + E+ +   N L  +       +P L+ + +++  
Sbjct: 56  LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115

Query: 138 INQISSYSFQSTPGIRYIDMS-NCQIHTIYSEAF 170
           I  +       +     +D+  N  IHTI   +F
Sbjct: 116 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.4 bits (149), Expect = 4e-11
 Identities = 19/118 (16%), Positives = 45/118 (38%), Gaps = 6/118 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAFRGVT-NMDELDLSDN 114
           Q L +S+  I  L     +         L ++    +  ++  +F G++     L L+ N
Sbjct: 107 QYLLISNTGIKHLPDVHKIHS--LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164

Query: 115 LLSTVPSLI--YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
            +  + +         +     +N + ++ +  F    G   +D+S  +IH++ S   
Sbjct: 165 GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL 222

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 18/112 (16%), Positives = 42/112 (37%), Gaps = 10/112 (8%)

Query: 51  GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110
           G+  ++ +L L+ N I  +    F   G    +        LE + +  F G +    LD
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAF--NGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208

Query: 111 LSDNLLSTVPS--LIYIPYLKSINLAHNPINQISSY-SFQSTPGIRYIDMSN 159
           +S   + ++PS  L  +  L++ +        +    + +    +    ++ 
Sbjct: 209 ISRTRIHSLPSYGLENLKKLRARST-----YNLKKLPTLEKLVALMEASLTY 255

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.8 bits (124), Expect = 6e-08
 Identities = 11/81 (13%), Positives = 30/81 (37%), Gaps = 4/81 (4%)

Query: 56  TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
            ++    +NN+  L  ++F   G +    L + + ++  +       +  +         
Sbjct: 180 DELNLSDNNNLEELPNDVF--HGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YN 235

Query: 116 LSTVPSLIYIPYLKSINLAHN 136
           L  +P+L  +  L   +L + 
Sbjct: 236 LKKLPTLEKLVALMEASLTYP 256

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 90.9 bits (226), Expect = 6e-21
 Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)

Query: 27  CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
            SC         +   R+F +IP G+    + LDLS N I  +           N+Q L 
Sbjct: 2   LSC---DASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRAC--ANLQVLI 56

Query: 87  LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPINQIS-S 143
           L+  ++  ++  AF  + +++ LDLSDN LS++ S     +  LK +NL  NP   +  +
Sbjct: 57  LKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116

Query: 144 YSFQSTPGIRYIDMSNC-QIHTIYSEAF 170
             F +   ++ + + N      I    F
Sbjct: 117 SLFPNLTNLQTLRIGNVETFSEIRRIDF 144

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.5 bits (173), Expect = 5e-14
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 11/122 (9%)

Query: 44  NFYTIPEGIDLDT--QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101
            F+ +P+        + L+LSS  I V++  I        ++ L +    L+        
Sbjct: 398 TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP-----QTLEVLDVSNNNLDSFS----L 448

Query: 102 GVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQ 161
            +  + EL +S N L T+P     P L  + ++ N +  +    F     ++ I +    
Sbjct: 449 FLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508

Query: 162 IH 163
             
Sbjct: 509 WD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 68.6 bits (168), Expect = 2e-13
 Identities = 20/114 (17%), Positives = 45/114 (39%), Gaps = 10/114 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             LD+S N  + +            ++ L L    +  V     + +     LD+S+N L
Sbjct: 390 TSLDISRNTFHPMPDSCQ---WPEKMRFLNLSSTGIRVVKTCIPQTLE---VLDVSNNNL 443

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
            +     ++P L+ + ++ N +  +   S    P +  + +S  Q+ ++    F
Sbjct: 444 DSFSL--FLPRLQELYISRNKLKTLPDASLF--PVLLVMKISRNQLKSVPDGIF 493

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 66.7 bits (163), Expect = 1e-12
 Identities = 22/114 (19%), Positives = 53/114 (46%), Gaps = 6/114 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           Q L LS N++  +QK   + + + N+  L + +     + D + +    M  L+LS   +
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-SCQWPEKMRFLNLSSTGI 422

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
             V + I    L+ +++++N ++  S       P ++ + +S  ++ T+   + 
Sbjct: 423 RVVKTCI-PQTLEVLDVSNNNLDSFSL----FLPRLQELYISRNKLKTLPDASL 471

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 66.3 bits (162), Expect = 1e-12
 Identities = 16/121 (13%), Positives = 49/121 (40%), Gaps = 10/121 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE---FVDDRAFRGVTNMDELDLSD 113
           + + + ++ + ++       +   +++ L L +  +      +        ++  L LS 
Sbjct: 313 KRITVENSKVFLVPCSFSQHL--KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

Query: 114 NLLSTVPSLIYI----PYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
           N L ++     I      L S++++ N  + +   S Q    +R++++S+  I  + +  
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTCI 429

Query: 170 F 170
            
Sbjct: 430 P 430

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.5 bits (134), Expect = 5e-09
 Identities = 14/109 (12%), Positives = 38/109 (34%), Gaps = 4/109 (3%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L++ + ++   Q +      I +I  L L   +  F+ +     ++++  L+L D  L
Sbjct: 151 NELEIKALSLRNYQSQSL--KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208

Query: 117 STVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIH 163
           +      L        +       + ++  SF     +    +   ++ 
Sbjct: 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 16/116 (13%), Positives = 37/116 (31%), Gaps = 4/116 (3%)

Query: 53  DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112
           D     L      I  L +  F    +  +        + + V +        +  L + 
Sbjct: 237 DESFNELLKLLRYILELSEVEFDDCTLNGL--GDFNPSESDVVSELGKVETVTIRRLHIP 294

Query: 113 DNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY 166
              L    S +Y  +  +K I + ++ +  +     Q    + ++D+S   +   Y
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 12/112 (10%), Positives = 42/112 (37%), Gaps = 6/112 (5%)

Query: 59  LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
           +   +   +VL  E F    +  + +  L   ++EF D      +  + + + S++ + +
Sbjct: 225 MKKLAFRGSVLTDESF--NELLKLLRYILELSEVEFDDCT----LNGLGDFNPSESDVVS 278

Query: 119 VPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
               +    ++ +++    +    S  +     ++ I + N ++  +     
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 88.2 bits (219), Expect = 9e-21
 Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 9/149 (6%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           C +            V C  RN   +P  +  DT +L LS N +          M  T +
Sbjct: 4   CEVSKVAS----HLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRL 57

Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI-YIPYLKSINLAHNPINQI 141
            +L L + +L  +       +  +  LDLS N L ++P L   +P L  ++++ N +  +
Sbjct: 58  TQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115

Query: 142 SSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
              + +    ++ + +   ++ T+     
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLL 144

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           Q L L  N +  L   +        ++KL L    L  +      G+ N+D L L +N L
Sbjct: 127 QELYLKGNELKTLPPGLL--TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 117 STVPSLIY-IPYLKSINLAHNP 137
            T+P   +    L    L  NP
Sbjct: 185 YTIPKGFFGSHLLPFAFLHGNP 206

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 87.7 bits (218), Expect = 1e-20
 Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 6/154 (3%)

Query: 19  TQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMG 78
                   CSC     K +V+C  +    IP  I  DT+ LDL SN ++ L  + F    
Sbjct: 4   LCKKDGGVCSCN--NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAF--HR 59

Query: 79  ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI--YIPYLKSINLAHN 136
           +T ++ LYL   KL+ +    F+ + N++ L ++DN L  +P  +   +  L  + L  N
Sbjct: 60  LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119

Query: 137 PINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
            +  +    F S   + Y+ +   ++ ++    F
Sbjct: 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.1 bits (154), Expect = 7e-12
 Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 7/129 (5%)

Query: 36  RTVECIDRNFYTIPEGI--DL-DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL 92
            T+   D     +P G+   L +   L L  N +  L   +F    +T +  L L   +L
Sbjct: 88  ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DSLTKLTYLSLGYNEL 145

Query: 93  EFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTP 150
           + +    F  +T++ EL L +N L  VP   +  +  LK++ L +N + ++   +F S  
Sbjct: 146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205

Query: 151 GIRYIDMSN 159
            ++ + +  
Sbjct: 206 KLKMLQLQE 214

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 88.9 bits (221), Expect = 3e-20
 Identities = 27/141 (19%), Positives = 67/141 (47%), Gaps = 6/141 (4%)

Query: 27  CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
           C         T +C++ NFY IP+ +   T+ LDLS N +  L    F       +Q L 
Sbjct: 3   CVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSF--PELQVLD 58

Query: 87  LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPINQISSY 144
           L +C+++ ++D A++ ++++  L L+ N + ++   +   +  L+ +      +  + ++
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

Query: 145 SFQSTPGIRYIDMSNCQIHTI 165
                  ++ +++++  I + 
Sbjct: 119 PIGHLKTLKELNVAHNLIQSF 139

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.8 bits (179), Expect = 9e-15
 Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 5/117 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL-EFVDDRAFRGVTNMDELDLSDNL 115
             LD+S  +  V    IF   G+++++ L +      E      F  + N+  LDLS   
Sbjct: 424 IYLDISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 116 LSTVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
           L  +   +   +  L+ +N++HN    + ++ ++    ++ +D S   I T   +  
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 19/118 (16%), Positives = 52/118 (44%), Gaps = 6/118 (5%)

Query: 57  QVLDLSSNNINVL-QKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN- 114
           + LD   +N+  + +  +FL +   N+  L +         +  F G+++++ L ++ N 
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSL--RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 115 LLSTVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
                       +  L  ++L+   + Q+S  +F S   ++ ++MS+    ++ +  +
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 8/131 (6%)

Query: 44  NFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD--DRAFR 101
            F   P       + L  +SN       E+ L     +++ L L +  L F     ++  
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL----PSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 102 GVTNMDELDLSDNLLSTVP-SLIYIPYLKSINLAHNPINQISSYS-FQSTPGIRYIDMSN 159
           G T++  LDLS N + T+  + + +  L+ ++  H+ + Q+S +S F S   + Y+D+S+
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 160 CQIHTIYSEAF 170
                 ++  F
Sbjct: 431 THTRVAFNGIF 441

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 9/121 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L L+ N I  L    F  +  +++QKL   +  L  +++     +  + EL+++ NL+
Sbjct: 79  STLILTGNPIQSLALGAFSGL--SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 117 STVPSLIYI---PYLKSINLAHNPINQISSYSFQSTPGIRY----IDMSNCQIHTIYSEA 169
            +     Y      L+ ++L+ N I  I     +    +      +D+S   ++ I   A
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 170 F 170
           F
Sbjct: 197 F 197

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 19/106 (17%), Positives = 47/106 (44%), Gaps = 4/106 (3%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           +VL ++ N+             + N+  L L +C+LE +   AF  ++++  L++S N  
Sbjct: 448 EVLKMAGNSFQENFLPDIFT-ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506

Query: 117 STVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPG-IRYIDMSN 159
            ++       +  L+ ++ + N I        Q  P  + +++++ 
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 64.7 bits (158), Expect = 5e-12
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
               L S  I  ++   +        Q L L  CK         +   ++  L  + N  
Sbjct: 285 SSFSLVSVTIERVKDFSYN----FGWQHLELVNCKFGQFPTLKLK---SLKRLTFTSNKG 337

Query: 117 STVPSLIYIPYLKSINLAHNPIN--QISSYSFQSTPGIRYIDMSNCQIHTI 165
               S + +P L+ ++L+ N ++     S S   T  ++Y+D+S   + T+
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             LDLS   +  L    F    ++++Q L +       +D   ++ + ++  LD S N +
Sbjct: 473 TFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530

Query: 117 STVP--SLIYIPY-LKSINLAHNPI 138
            T     L + P  L  +NL  N  
Sbjct: 531 MTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 22/113 (19%), Positives = 48/113 (42%), Gaps = 10/113 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD-DRAFRGVTNMDELDLSDNL 115
           Q L     N+  L+      +    +++L +    ++       F  +TN++ LDLS N 
Sbjct: 103 QKLVAVETNLASLENFPIGHL--KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 116 LSTVP--SLIYIPYLK----SINLAHNPINQISSYSFQSTPGIRYIDMSNCQI 162
           + ++    L  +  +     S++L+ NP+N I   +F+    +  + + N   
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFD 212

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 23/139 (16%), Positives = 50/139 (35%), Gaps = 14/139 (10%)

Query: 44  NFYTIPEGI--DLDTQVLDLSSNNINV-LQKEIFLQMGITNIQKLYLRK----CKLEFVD 96
               I  G   ++    L L +N  ++ + K     +    + +L L +      LE  D
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 97  DRAFRGVTNMDELDLSDNLLSTVPSLI-----YIPYLKSINLAHNPINQISSYSFQSTPG 151
             A  G+ N+   +     L      I      +  + S +L    I ++  +S+    G
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF--G 305

Query: 152 IRYIDMSNCQIHTIYSEAF 170
            +++++ NC+     +   
Sbjct: 306 WQHLELVNCKFGQFPTLKL 324

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 15/124 (12%)

Query: 59  LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF-VDDRAFRGVTNMDELDLSDNLLS 117
           LDLS N +N +Q   F ++    + KL LR       V     +G+  ++   L      
Sbjct: 182 LDLSLNPMNFIQPGAFKEI---RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 118 TVPSLIYIPY-----LKSINLAHNPINQISSY------SFQSTPGIRYIDMSNCQIHTIY 166
              +L          L ++ +    +  +  Y       F     +    + +  I  + 
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 167 SEAF 170
             ++
Sbjct: 299 DFSY 302

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 16/122 (13%), Positives = 39/122 (31%), Gaps = 10/122 (8%)

Query: 56  TQVLDLSSNNINVLQKEIFLQMG-ITNIQKLYLRKCKLEFVDD------RAFRGVTNMDE 108
            +V  L                  +  +  L + + +L ++D         F  +TN+  
Sbjct: 227 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286

Query: 109 LDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSE 168
             L    +  V    Y    + + L +    Q  +   +S   ++ +  ++ +    +SE
Sbjct: 287 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNKGGNAFSE 343

Query: 169 AF 170
             
Sbjct: 344 VD 345

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
                +     +P  +     K+++L+ NP+  + SYSF S P ++ +D+S C+I TI  
Sbjct: 11  TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 168 EAFY 171
            A+ 
Sbjct: 70  GAYQ 73

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 17/110 (15%), Positives = 46/110 (41%), Gaps = 5/110 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV-TNMDELDLSDNL 115
           QVL++S NN   L    +  +   ++Q L      +     +  +   +++  L+L+ N 
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCL--NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 554

Query: 116 LS-TVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMS-NCQIH 163
            + T     ++ ++K        + ++   +     G+  + ++  CQ++
Sbjct: 555 FACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNITCQMN 604

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.0 bits (216), Expect = 1e-19
 Identities = 31/174 (17%), Positives = 67/174 (38%), Gaps = 29/174 (16%)

Query: 36  RTVECIDRNFYTIPEGI-------DLDT-----------------QVLDLSSNNINVLQK 71
              +C       +P+ +       +L                     LD+  N I+ L+ 
Sbjct: 7   EVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 66

Query: 72  EIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLK 129
           E+  ++    ++ L L+  +L  + D+ F   TN+ EL L  N +  +     +    L 
Sbjct: 67  ELCQKL--PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124

Query: 130 SINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLD 183
           +++L+HN ++     +      ++ + +SN +I  + SE   +     S   L+
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS-SLKKLE 177

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.4 bits (199), Expect = 3e-17
 Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 10/124 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           Q L L    +  +         + N+  L L    +  ++D    G+  ++ LDL  N L
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516

Query: 117 STVPSLIYI----------PYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY 166
           + +                 +L  +NL  N  ++I    F+    ++ ID+    ++T+ 
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576

Query: 167 SEAF 170
           +  F
Sbjct: 577 ASVF 580

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.4 bits (199), Expect = 3e-17
 Identities = 23/114 (20%), Positives = 52/114 (45%), Gaps = 5/114 (4%)

Query: 57  QVLDLSSNNINV--LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
           + L LS++  ++  L  E F+ +  + +  L L K K+  ++  AF  + +++ LDL  N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415

Query: 115 LLSTVP---SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
            +           +  +  I L++N   Q++  SF   P ++ + +    +  +
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 79.3 bits (196), Expect = 7e-17
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 11/125 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + L LS++ ++      FL +  TN+  L L    L  V + +F  +  ++   L  N +
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284

Query: 117 STVP--SLIYIPYLKSINLAHN---------PINQISSYSFQSTPGIRYIDMSNCQIHTI 165
             +   SL  +  ++ +NL  +          + +I  +SFQ    + +++M +  I  I
Sbjct: 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344

Query: 166 YSEAF 170
            S  F
Sbjct: 345 KSNMF 349

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.8 bits (187), Expect = 9e-16
 Identities = 21/121 (17%), Positives = 56/121 (46%), Gaps = 7/121 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           Q L LS+N I  L+ E       ++++KL L   +++      F  +  +  L L++  L
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207

Query: 117 STVP-----SLIYIPYLKSINLAHNPINQISSYSFQS--TPGIRYIDMSNCQIHTIYSEA 169
                      +    +++++L+++ ++  S+ +F       +  +D+S   ++ + +++
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267

Query: 170 F 170
           F
Sbjct: 268 F 268

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 74.3 bits (183), Expect = 3e-15
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 9/122 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR---GVTNMDELDLSD 113
           + L+LSSN I       F    I  +  L+L   +L              T++  L LS+
Sbjct: 174 KKLELSSNQIKEFSPGCFH--AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231

Query: 114 NLLSTVPSLIY----IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
           + LST  +  +       L  ++L++N +N + + SF   P + Y  +    I  ++S +
Sbjct: 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291

Query: 170 FY 171
            +
Sbjct: 292 LH 293

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.5 bits (181), Expect = 5e-15
 Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 14/128 (10%)

Query: 57  QVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG--VTNMDELDLSD 113
             L L++  +   L +++ L++  T+I+ L L   +L    +  F G   TN+  LDLS 
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257

Query: 114 NLLSTVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSN---------CQI 162
           N L+ V   S  ++P L+   L +N I  + S+S      +RY+++             +
Sbjct: 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317

Query: 163 HTIYSEAF 170
             I   +F
Sbjct: 318 PKIDDFSF 325

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 25/124 (20%), Positives = 56/124 (45%), Gaps = 12/124 (9%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA--------FRGVTNMDE 108
            +LDLS+NNI  +  ++   +    ++ L L+   L  +   A         +G++++  
Sbjct: 483 TILDLSNNNIANINDDMLEGL--EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540

Query: 109 LDLSDNLLSTVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY 166
           L+L  N    +P      +  LK I+L  N +N + +  F +   ++ +++    I ++ 
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600

Query: 167 SEAF 170
            + F
Sbjct: 601 KKVF 604

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 8/115 (6%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
               +S  ++  +    F  +    ++ L +    +  +    F G+ N+  L LS++  
Sbjct: 308 TKQSISLASLPKIDDFSFQWL--KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365

Query: 117 STVP------SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           S           +    L  +NL  N I++I S +F     +  +D+   +I   
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 9/116 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQM------GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110
           ++LDL  NN+  L K            G++++  L L     + +    F+ +  +  +D
Sbjct: 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566

Query: 111 LSDNLLSTVP--SLIYIPYLKSINLAHNPINQISSYSFQST-PGIRYIDMSNCQIH 163
           L  N L+T+P         LKS+NL  N I  +    F      +  +DM      
Sbjct: 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIH 163
            + +  D S   L+ VP  +    +  +NL HN + ++ + +F     +  +D+    I 
Sbjct: 4   VSHEVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 164 TIYSEAF 170
            +  E  
Sbjct: 63  KLEPELC 69

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 86.1 bits (213), Expect = 3e-19
 Identities = 24/137 (17%), Positives = 59/137 (43%), Gaps = 4/137 (2%)

Query: 35  KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF 94
           +  V+        +P+ +   T +L++S N I+ L     L   ++ ++ L +   ++++
Sbjct: 2   EFLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDIL--SLSKLRILIISHNRIQY 59

Query: 95  VDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYS-FQSTPGIR 153
           +D   F+    ++ LDLS N L  +        LK ++L+ N  + +     F +   ++
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLVKISC-HPTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118

Query: 154 YIDMSNCQIHTIYSEAF 170
           ++ +S   +        
Sbjct: 119 FLGLSTTHLEKSSVLPI 135

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 19/117 (16%), Positives = 52/117 (44%), Gaps = 2/117 (1%)

Query: 55  DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD-DRAFRGVTNMDELDLSD 113
           + + L L  N +  L K   +   + ++Q+L + +  + + +         ++  L++S 
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408

Query: 114 NLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
           N+L+        P +K ++L  N I  I     +    ++ +++++ Q+ ++    F
Sbjct: 409 NILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLE-ALQELNVASNQLKSVPDGIF 464

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.9 bits (127), Expect = 4e-08
 Identities = 12/119 (10%), Positives = 39/119 (32%), Gaps = 7/119 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
            + + + +   ++      ++  +    L      L          +T ++ L L  N L
Sbjct: 303 NIKNFTVSGTRMVHMLCPSKI--SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360

Query: 117 STVPSLIYI----PYLKSINLAHNPINQISSY-SFQSTPGIRYIDMSNCQIHTIYSEAF 170
             +  +  +      L+ ++++ N ++          T  +  ++MS+  +        
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 56  TQVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
            Q LD+S N+++   +K         ++  L +    L     R       +  LDL  N
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWT--KSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSN 431

Query: 115 LLSTVPSLIYI-PYLKSINLAHNPINQISSYSFQSTPGIRYIDMSN 159
            + ++P  +     L+ +N+A N +  +    F     ++ I +  
Sbjct: 432 KIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.2 bits (112), Expect = 3e-06
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 48  IPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107
           I   +    +VLDL SN I  + K++     +  +Q+L +   +L+ V D  F  +T++ 
Sbjct: 415 IFRCLPPRIKVLDLHSNKIKSIPKQVV---KLEALQELNVASNQLKSVPDGIFDRLTSLQ 471

Query: 108 ELDLSDN 114
           ++ L  N
Sbjct: 472 KIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 15/133 (11%), Positives = 42/133 (31%), Gaps = 8/133 (6%)

Query: 59  LDLSSNNINVLQKEIFLQMGITNIQKLYLRKC---KLEFVDDRAFRGVTNMDELDLSDNL 115
             +S+  +             T+++ L + +       F     +   +NM+  + + + 
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311

Query: 116 LSTVPSLI--YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
              V  L    I     ++ ++N +      +      +  + +   Q+  +   A    
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371

Query: 174 VLPGSNLT-LDCR 185
            +   +L  LD  
Sbjct: 372 QMK--SLQQLDIS 382

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 86.1 bits (213), Expect = 3e-19
 Identities = 34/199 (17%), Positives = 78/199 (39%), Gaps = 9/199 (4%)

Query: 5   FILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSN 64
            + S   +  LA +  +  P   S +    +  V+  +RN   +P+ +   T+ L LS N
Sbjct: 8   IVGSFHFVCALALIVGSMTP--FSNE---LESMVDYSNRNLTHVPKDLPPRTKALSLSQN 62

Query: 65  NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY 124
           +I+ L+        ++ ++ L L   ++  +D   F    +++ LD+S N L  +     
Sbjct: 63  SISELRMPDIS--FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCP- 119

Query: 125 IPYLKSINLAHNPINQISSYS-FQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLD 183
           +  L+ ++L+ N  + +     F +   + ++ +S  +   +       + L    L L 
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLV 179

Query: 184 CRVQSATPCRIMWSINRKI 202
                      +   N  +
Sbjct: 180 SYHIKGGETESLQIPNTTV 198

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.3 bits (128), Expect = 3e-08
 Identities = 14/127 (11%), Positives = 41/127 (32%), Gaps = 10/127 (7%)

Query: 45  FYTIPEGI---DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101
           F    E +     +  +  LS ++   +          ++   L   +        +   
Sbjct: 317 FLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSP--SSFTFLNFTQNVFTDSVFQGCS 374

Query: 102 GVTNMDELDLSDNLLSTVPSLIYIP-YLKSINLAHNPINQISSYSF----QSTPGIRYID 156
            +  +  L L  N L     +  +   + S+      +N ++S+++         I  ++
Sbjct: 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434

Query: 157 MSNCQIH 163
           +S+  + 
Sbjct: 435 LSSNMLT 441

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 56  TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
             VL+LSSN    L   +F  +    ++ L L   ++  +       +  + EL+++ N 
Sbjct: 430 ILVLNLSSNM---LTGSVFRCLP-PKVKVLDLHNNRIMSIPK-DVTHLQALQELNVASNQ 484

Query: 116 LSTVP--SLIYIPYLKSINLAHNP 137
           L +VP      +  L+ I L  NP
Sbjct: 485 LKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 8/116 (6%), Positives = 35/116 (30%), Gaps = 2/116 (1%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
            + +L+       ++  + +  + ++   +++     F  +  +     M+   LS +  
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341

Query: 117 STVPSLI--YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
             +  +          +N   N           +   ++ + +    +   +  A 
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL 397

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 85.2 bits (211), Expect = 6e-19
 Identities = 23/116 (19%), Positives = 54/116 (46%), Gaps = 2/116 (1%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
                  +NI    +  F  +  ++++ L L    +  ++ R F  + ++  L+L+ N +
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302

Query: 117 STVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
           + +   +   +  L+ +NL++N + ++ S +F   P + YID+    I  I  + F
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 81.4 bits (201), Expect = 1e-17
 Identities = 36/172 (20%), Positives = 61/172 (35%), Gaps = 33/172 (19%)

Query: 27  CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM--------- 77
           CS       R       N   +P+ ++  T+ L LS N I  +    F  +         
Sbjct: 2   CSFD----GRIAFYRFCNLTQVPQVLN-TTERLLLSFNYIRTVTASSFPFLEQLQLLELG 56

Query: 78  --------------GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--- 120
                          + N++ L L   K+ F+   AF+G+ ++ EL L    LS      
Sbjct: 57  SQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD 116

Query: 121 -SLIYIPYLKSINLAHNPINQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
                +  L  ++L+ N I  +    SF     ++ ID S+ QI  +     
Sbjct: 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 168

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 77.2 bits (190), Expect = 4e-16
 Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 14/133 (10%)

Query: 53  DLDTQVLDLSSNNINVLQKEIFLQ----------MGITNIQKLYLRKCKLEFVDDRAFRG 102
           ++  ++LD+S N   V     F            +   +I         ++  D   F G
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262

Query: 103 V--TNMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMS 158
           +  +++  LDLS   + ++ S +   +  LK +NLA+N IN+I+  +F     ++ +++S
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322

Query: 159 NCQIHTIYSEAFY 171
              +  +YS  FY
Sbjct: 323 YNLLGELYSSNFY 335

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 73.3 bits (180), Expect = 6e-15
 Identities = 31/133 (23%), Positives = 61/133 (45%), Gaps = 9/133 (6%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE--FVDDRAFRGVTNMDELDLSDN 114
           ++LDL S+ I  L  + F   G+ ++ +L L  C L    + D  FR +  +  LDLS N
Sbjct: 76  RILDLGSSKIYFLHPDAF--QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133

Query: 115 LLSTVP---SLIYIPYLKSINLAHNPINQISSYSFQS--TPGIRYIDMSNCQIHTIYSEA 169
            + ++    S   +  LKSI+ + N I  +  +  +      + +  ++   +++  S  
Sbjct: 134 QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD 193

Query: 170 FYVMVLPGSNLTL 182
           +   + P  N+ L
Sbjct: 194 WGKCMNPFRNMVL 206

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 73.3 bits (180), Expect = 7e-15
 Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 9/114 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           QVL+LS N +  L    F   G+  +  + L+K  +  + D+ F+ +  +  LDL DN L
Sbjct: 317 QVLNLSYNLLGELYSSNF--YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
           +T+  +   P +  I L+ N +  +   +  +      I +S  ++  +    F
Sbjct: 375 TTIHFI---PSIPDIFLSGNKLVTLPKINLTAN----LIHLSENRLENLDILYF 421

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 69.1 bits (169), Expect = 2e-13
 Identities = 23/129 (17%), Positives = 56/129 (43%), Gaps = 6/129 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQ---MGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113
           + L L  N + +  +         G++++Q LYL    L  +    F  +T +  L L+ 
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513

Query: 114 NLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
           N L+ +        L+ ++++ N +   +   F S   +  +D+++ +       + ++ 
Sbjct: 514 NRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVS---LSVLDITHNKFICECELSTFIN 570

Query: 174 VLPGSNLTL 182
            L  +N+T+
Sbjct: 571 WLNHTNVTI 579

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 68.7 bits (168), Expect = 2e-13
 Identities = 23/135 (17%), Positives = 52/135 (38%), Gaps = 9/135 (6%)

Query: 44  NFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA-FRG 102
           N       I+L   ++ LS N +  L    FL   + ++Q L L + +            
Sbjct: 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLL-RVPHLQILILNQNRFSSCSGDQTPSE 449

Query: 103 VTNMDELDLSDNLLSTVP-------SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYI 155
             ++++L L +N+L               + +L+ + L HN +N +    F     +R +
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509

Query: 156 DMSNCQIHTIYSEAF 170
            +++ ++  +     
Sbjct: 510 SLNSNRLTVLSHNDL 524

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.4 bits (157), Expect = 6e-12
 Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 22/136 (16%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN------MDELD 110
           + +D SSN I ++ +     +    +    L    L       +    N      ++ LD
Sbjct: 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210

Query: 111 LSDNLLSTVP--------------SLIYIPYLKSINLAHNPINQISSYSFQS--TPGIRY 154
           +S N  +                 SLI   ++       + I      +F       +R+
Sbjct: 211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270

Query: 155 IDMSNCQIHTIYSEAF 170
           +D+S+  + ++ S  F
Sbjct: 271 LDLSHGFVFSLNSRVF 286

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.9 bits (140), Expect = 9e-10
 Identities = 25/136 (18%), Positives = 55/136 (40%), Gaps = 22/136 (16%)

Query: 57  QVLDLSSNNINVLQ-----KEIFL-QMGITNIQK-------LYLRKCKLEFVDDRAF-RG 102
           Q LDL  N +  +       +IFL    +  + K       ++L + +LE +D   F   
Sbjct: 365 QTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLR 424

Query: 103 VTNMDELDLSDNLLSTVPS---LIYIPYLKSINLAHNPIN-----QISSYSFQSTPGIRY 154
           V ++  L L+ N  S+          P L+ + L  N +      ++    F+    ++ 
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484

Query: 155 IDMSNCQIHTIYSEAF 170
           + +++  ++++    F
Sbjct: 485 LYLNHNYLNSLPPGVF 500

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 77.4 bits (191), Expect = 3e-17
 Identities = 25/179 (13%), Positives = 55/179 (30%), Gaps = 33/179 (18%)

Query: 21  ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM--- 77
                 C C     +       ++   IP  +   TQ L L   ++  +    F  +   
Sbjct: 2   GCSSPPCEC---HQEEDFRVTCKDIQRIP-SLPPSTQTLKLIETHLRTIPSHAFSNLPNI 57

Query: 78  --------------------GITNIQKLYLRKCK-LEFVDDRAFRGVTNMDELDLSDNLL 116
                                ++ +  + +R  + L ++D  A + +  +  L + +  L
Sbjct: 58  SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL 117

Query: 117 STVPSLIYI---PYLKSINLAHNP-INQISSYSFQS-TPGIRYIDMSNCQIHTIYSEAF 170
              P L  +        + +  NP +  I   +FQ        + + N    ++   AF
Sbjct: 118 KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF 176

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 6/119 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAFRGVTNM-DELDLSDN 114
           + L + +  + +      +         L +     +  +   AF+G+ N    L L +N
Sbjct: 108 KFLGIFNTGLKMFPDLTKVY-STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166

Query: 115 LLSTVPSLIYI-PYLKSINLAHNP-INQISSYSFQSTP-GIRYIDMSNCQIHTIYSEAF 170
             ++V    +    L ++ L  N  +  I   +F     G   +D+S   +  + S+  
Sbjct: 167 GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL 225

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 56  TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEFVDDRAFRG-VTNMDELDLSD 113
           T  L L +N    +Q   F     T +  +YL K K L  +D  AF G  +    LD+S 
Sbjct: 158 TLTLKLYNNGFTSVQGYAFNG---TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214

Query: 114 NLLSTVPS--LIYIPYLKSINL 133
             ++ +PS  L ++  L + N 
Sbjct: 215 TSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 9/98 (9%)

Query: 57  QVLDLSSNN-INVLQKEIFLQMGITN-IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
            +L+++ N  +  +    F   G+ N    L L       V   AF G T +D + L+ N
Sbjct: 133 FILEITDNPYMTSIPVNAF--QGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKN 189

Query: 115 -LLSTVPSLIY---IPYLKSINLAHNPINQISSYSFQS 148
             L+ +    +         ++++   +  + S   + 
Sbjct: 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEH 227

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMS-NCQI 162
              ++  ++   +  +PSL   P  +++ L    +  I S++F + P I  I +S +  +
Sbjct: 11  HQEEDFRVTCKDIQRIPSLP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL 68

Query: 163 HTIYSEAFY 171
             + S +FY
Sbjct: 69  QQLESHSFY 77

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 78.5 bits (194), Expect = 4e-17
 Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 18/130 (13%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           ++  ++ +++      +       N+++L L    L  +        T ++ L+LS N+L
Sbjct: 13  KIEKVTDSSLKQALASLR--QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 117 STVPSLIYIPYLKSINLAHNPI----------------NQISSYSFQSTPGIRYIDMSNC 160
                L  +  L++++L +N +                N IS  S     G + I ++N 
Sbjct: 71  YETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN 130

Query: 161 QIHTIYSEAF 170
           +I  +     
Sbjct: 131 KITMLRDLDE 140

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 77.0 bits (190), Expect = 1e-16
 Identities = 23/120 (19%), Positives = 53/120 (44%), Gaps = 4/120 (3%)

Query: 47  TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG-VTN 105
            +        + + L++N I +L+         + +Q L L+  +++ V+          
Sbjct: 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCR--SRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 106 MDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           ++ L+L  N +  V   +    LK+++L+ N +  +    FQS  G+ +I + N ++  I
Sbjct: 171 LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI 229

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 21/115 (18%), Positives = 48/115 (41%), Gaps = 10/115 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           ++L+LSSN +     ++     ++ ++ L L    ++           +++ L  ++N +
Sbjct: 61  ELLNLSSNVLYETL-DLE---SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI 111

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
           S V         K+I LA+N I  +          ++Y+D+   +I T+      
Sbjct: 112 SRVSCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 71  KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYL 128
            EI         +   +    L+       +   N+ ELDLS N LS +    L     L
Sbjct: 3   HEIKQNG--NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 129 KSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           + +NL+ N + +      +S   +R +D++N  +  +
Sbjct: 61  ELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQEL 95

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 6/115 (5%)

Query: 47  TIPEGIDLDT-QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN 105
            +   +     + LDLSSN +  +  E         +  + LR  KL  ++  A R   N
Sbjct: 183 DVKGQVVFAKLKTLDLSSNKLAFMGPEF---QSAAGVTWISLRNNKLVLIEK-ALRFSQN 238

Query: 106 MDELDLSDNLLSTVPSLIYIPYLKSI-NLAHNPINQISSYSFQSTPGIRYIDMSN 159
           ++  DL  N         +    + +  +A   + +++  + +            
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 77.6 bits (191), Expect = 2e-16
 Identities = 22/131 (16%), Positives = 50/131 (38%), Gaps = 18/131 (13%)

Query: 56  TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
            ++  ++ +++      +       N+++L L    L  +        T ++ L+LS N+
Sbjct: 12  YKIEKVTDSSLKQALASLR--QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 116 LSTVPSLIYIPYLKSINLAHNPI----------------NQISSYSFQSTPGIRYIDMSN 159
           L     L  +  L++++L +N +                N IS  S     G + I ++N
Sbjct: 70  LYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLAN 129

Query: 160 CQIHTIYSEAF 170
            +I  +     
Sbjct: 130 NKITMLRDLDE 140

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 76.4 bits (188), Expect = 5e-16
 Identities = 23/110 (20%), Positives = 52/110 (47%), Gaps = 4/110 (3%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG-VTNMDELDLSDNL 115
           + + L++N I +L+         + +Q L L+  +++ V+          ++ L+L  N 
Sbjct: 123 KNIYLANNKITMLRDLDEGCR--SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 116 LSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           +  V   +    LK+++L+ N +  +    FQS  G+ +I + N ++  I
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI 229

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 70.6 bits (173), Expect = 4e-14
 Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 12/122 (9%)

Query: 47  TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
            +  G  +  + L  ++NNI+ +             + +YL   K+  + D      + +
Sbjct: 94  ELLVGPSI--ETLHAANNNISRVSCSRG-----QGKKNIYLANNKITMLRDLDEGCRSRV 146

Query: 107 DELDLSDNLLSTVPSLIYI---PYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIH 163
             LDL  N + TV           L+ +NL +N I  +          ++ +D+S+ ++ 
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLA 204

Query: 164 TI 165
            +
Sbjct: 205 FM 206

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 68.7 bits (168), Expect = 2e-13
 Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 22/133 (16%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + LDLS N ++ +          T ++ L L    L    D     ++ +  LDL++N +
Sbjct: 37  KELDLSGNPLSQISAADLAPF--TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92

Query: 117 STVPSLI-------------YIPY-----LKSINLAHNPINQISSYSFQSTPGIRYIDMS 158
             +                  +        K+I LA+N I  +          ++Y+D+ 
Sbjct: 93  QELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152

Query: 159 NCQIHTIYSEAFY 171
             +I T+      
Sbjct: 153 LNEIDTVNFAELA 165

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.5 bits (144), Expect = 3e-10
 Identities = 20/150 (13%), Positives = 47/150 (31%), Gaps = 6/150 (4%)

Query: 47  TIPEGIDLDT-QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN 105
            +   +     + LDLSSN +  +  E         +  + LR  KL  ++  A R   N
Sbjct: 183 DVKGQVVFAKLKTLDLSSNKLAFMGPEF---QSAAGVTWISLRNNKLVLIEK-ALRFSQN 238

Query: 106 MDELDLSDNLLSTVPSLIYIPYLKSI-NLAHNPINQISSYSFQSTPGIRYIDMSNCQIHT 164
           ++  DL  N         +    + +  +A   + +++  + +                 
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298

Query: 165 IYSEAFYVMVLPGSNLTLDCRVQSATPCRI 194
           + +     ++            Q +   R+
Sbjct: 299 LPAPFADRLIALKRKEHALLSGQGSETERL 328

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 71  KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYL 128
            EI         +   +    L+       +   N+ ELDLS N LS +    L     L
Sbjct: 3   HEIKQNG--NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 129 KSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           + +NL+ N + +      +S   +R +D++N  +  +
Sbjct: 61  ELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQEL 95

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 12/157 (7%), Positives = 40/157 (25%), Gaps = 12/157 (7%)

Query: 8   SVFLLTLLASVTQASCPLGCSC--KWKAGKRTVECIDRNFYTIPEGIDLDT----QVLDL 61
           ++     L           C     + +  + V+ + +       G + +      +   
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

Query: 62  SSNNINVLQKEIF---LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
            +     L        + +       L  +  + E ++           E+D       T
Sbjct: 292 GAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQ-ARQREIDALKEQYRT 350

Query: 119 VPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIR 153
           V   +        ++      +++  S   ++   + 
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 77.1 bits (190), Expect = 3e-16
 Identities = 31/118 (26%), Positives = 65/118 (55%), Gaps = 4/118 (3%)

Query: 55  DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
             +  DLS + I  L K +F     T++++L L + ++  +DD AF G+T++ +L+LS N
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHF--TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333

Query: 115 LLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
            L ++ S ++  +  L+ ++L++N I  +   SF   P ++ + +   Q+ ++    F
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 76.3 bits (188), Expect = 4e-16
 Identities = 29/153 (18%), Positives = 62/153 (40%), Gaps = 12/153 (7%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
               CS           CI+R  + +PE +      +DLS N+I  L +  F    + ++
Sbjct: 4   GTSECSV----IGYNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFS--RLQDL 56

Query: 83  QKLYLRKCKLEF-VDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIN 139
           Q L + +      + +  FRG++++  L L  N    + +  +  +  L+ + L    ++
Sbjct: 57  QFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD 116

Query: 140 --QISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
              +S   F+    +  + + +  I  I   +F
Sbjct: 117 GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 65.2 bits (159), Expect = 3e-12
 Identities = 21/113 (18%), Positives = 49/113 (43%), Gaps = 2/113 (1%)

Query: 60  DLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
                N        F  +  + ++   L K K+  +    F   T++++L L+ N ++ +
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314

Query: 120 PSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
               +  + +L  +NL+ N +  I S  F++   +  +D+S   I  +  ++F
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 60.5 bits (147), Expect = 9e-11
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L+LS N +  +   +F    +  ++ L L    +  + D++F G+ N+ EL L  N L
Sbjct: 326 LKLNLSQNFLGSIDSRMF--ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383

Query: 117 STVPSLIY--IPYLKSINLAHNP 137
            +VP  I+  +  L+ I L  NP
Sbjct: 384 KSVPDGIFDRLTSLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 7/129 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE--FVDDRAFRGVTNMDELDLSDN 114
            +L L  N    L+   F   G+ N++ L L +C L+   +    F+ +T+++ L L DN
Sbjct: 82  IILKLDYNQFLQLETGAF--NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 115 LLSTVPSLIY---IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
            +  +    +   +     ++L  N +  I      +  G  +  +    I       ++
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199

Query: 172 VMVLPGSNL 180
           +      N 
Sbjct: 200 LGWEKCGNP 208

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.4 bits (118), Expect = 5e-07
 Identities = 24/164 (14%), Positives = 48/164 (29%), Gaps = 49/164 (29%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYL--------RKCKLEFVDDRAFRGVTNMDE 108
            VLDL+ N +  + +E  L     +   L L         +  L +         T++  
Sbjct: 157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITT 216

Query: 109 LDLSDNLLSTVPSLIY-----------------------------------------IPY 127
           LDLS N      +  +                                            
Sbjct: 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276

Query: 128 LKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
           +K+ +L+ + I  +    F     +  + ++  +I+ I   AF+
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 76.2 bits (188), Expect = 4e-16
 Identities = 16/135 (11%), Positives = 48/135 (35%), Gaps = 2/135 (1%)

Query: 38  VECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD 97
           V+     +  I   +  D    D+  +         F  + + N + +  +   +  +  
Sbjct: 3   VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 62

Query: 98  RAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYI 155
                   ++ L+L+D  +  +   +  Y   ++ + +  N I  +  + FQ+ P +  +
Sbjct: 63  ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122

Query: 156 DMSNCQIHTIYSEAF 170
            +    + ++    F
Sbjct: 123 VLERNDLSSLPRGIF 137

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 75.9 bits (187), Expect = 6e-16
 Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 8/114 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
            VL L  N+++ L + IF       +  L +    LE ++D  F+  T++  L LS N L
Sbjct: 120 TVLVLERNDLSSLPRGIF--HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
           + V   + IP L   N+++N ++     +      +  +D S+  I+ +     
Sbjct: 178 THVDLSL-IPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVN 225

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 73.5 bits (181), Expect = 3e-15
 Identities = 27/142 (19%), Positives = 58/142 (40%), Gaps = 21/142 (14%)

Query: 47  TIPEGIDLDTQVLDLSSNNINVLQKEIFLQ-----------------MGITNIQKLYLRK 89
           T+   I +  + LD S N+INV++  + ++                 +    + ++ L  
Sbjct: 200 TLAIPIAV--EELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSY 257

Query: 90  CKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQS 148
            +LE +    F  +  ++ L +S+N L  +      IP LK ++L+HN +  +     Q 
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ- 316

Query: 149 TPGIRYIDMSNCQIHTIYSEAF 170
              +  + + +  I T+     
Sbjct: 317 FDRLENLYLDHNSIVTLKLSTH 338

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 70.1 bits (172), Expect = 5e-14
 Identities = 20/109 (18%), Positives = 44/109 (40%), Gaps = 10/109 (9%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
              ++S N ++ L   I ++       +L      +  V       +T    L L  N L
Sbjct: 189 FHANVSYNLLSTLAIPIAVE-------ELDASHNSINVVRGPVNVELT---ILKLQHNNL 238

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           +    L+  P L  ++L++N + +I  + F     +  + +SN ++  +
Sbjct: 239 TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL 287

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 6/92 (6%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           +VLDLS N++  +++          ++ LYL    +  +          +  L LS N  
Sbjct: 298 KVLDLSHNHLLHVERNQP---QFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHNDW 351

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQS 148
                      +    +     +    Y  + 
Sbjct: 352 DCNSLRALFRNVARPAVDDADQHCKIDYQLEH 383

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 76.9 bits (189), Expect = 4e-16
 Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 8/114 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
            VL L  N+++ L + IF       +  L +    LE ++D  F+  T++  L LS N L
Sbjct: 126 TVLVLERNDLSSLPRGIF--HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
           + V  L  IP L   N+++N ++ ++         +  +D S+  I+ +     
Sbjct: 184 THVD-LSLIPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPVN 231

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 75.7 bits (186), Expect = 9e-16
 Identities = 16/135 (11%), Positives = 48/135 (35%), Gaps = 2/135 (1%)

Query: 38  VECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD 97
           V+     +  I   +  D    D+  +         F  + + N + +  +   +  +  
Sbjct: 9   VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 68

Query: 98  RAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYI 155
                   ++ L+L+D  +  +   +  Y   ++ + +  N I  +  + FQ+ P +  +
Sbjct: 69  ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128

Query: 156 DMSNCQIHTIYSEAF 170
            +    + ++    F
Sbjct: 129 VLERNDLSSLPRGIF 143

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 75.3 bits (185), Expect = 1e-15
 Identities = 27/142 (19%), Positives = 58/142 (40%), Gaps = 21/142 (14%)

Query: 47  TIPEGIDLDTQVLDLSSNNINVLQKEIFLQM-----------------GITNIQKLYLRK 89
           T+   I +  + LD S N+INV++  + +++                     + ++ L  
Sbjct: 206 TLAIPIAV--EELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSY 263

Query: 90  CKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI-YIPYLKSINLAHNPINQISSYSFQS 148
            +LE +    F  +  ++ L +S+N L  +      IP LK ++L+HN +  +     Q 
Sbjct: 264 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ- 322

Query: 149 TPGIRYIDMSNCQIHTIYSEAF 170
              +  + + +  I T+     
Sbjct: 323 FDRLENLYLDHNSIVTLKLSTH 344

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.1 bits (174), Expect = 3e-14
 Identities = 20/109 (18%), Positives = 44/109 (40%), Gaps = 10/109 (9%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
              ++S N ++ L   I ++       +L      +  V       +T    L L  N L
Sbjct: 195 FHANVSYNLLSTLAIPIAVE-------ELDASHNSINVVRGPVNVELT---ILKLQHNNL 244

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           +    L+  P L  ++L++N + +I  + F     +  + +SN ++  +
Sbjct: 245 TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL 293

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 6/92 (6%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           +VLDLS N++  +++          ++ LYL    +  +          +  L LS N  
Sbjct: 304 KVLDLSHNHLLHVERNQP---QFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHNDW 357

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQS 148
                      +    +     +    Y  + 
Sbjct: 358 DCNSLRALFRNVARPAVDDADQHCKIDYQLEH 389

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.5 bits (183), Expect = 2e-15
 Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 8/117 (6%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGI-------TNIQKLYLRKCKL-EFVDDRAFRGVTNMDE 108
           Q L+++ N      +       +         IQ  Y+    L EF    + + +  +  
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577

Query: 109 LDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           LD   N +  + +      L  + L +N I +I       T  +  +  S+ ++  I
Sbjct: 578 LDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI 634

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.1 bits (182), Expect = 4e-15
 Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 10/133 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL-EFVDDRAFRGVTNMDELDLSDNL 115
             L L  N I  + ++         ++ L     KL    +    + V  M  +D S N 
Sbjct: 598 TDLKLDYNQIEEIPEDFCAFT--DQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK 655

Query: 116 LSTVPSLIYIPY-------LKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSE 168
           + +    I             ++ L++N I +  +  F +   I  I +SN  + +I   
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715

Query: 169 AFYVMVLPGSNLT 181
           +         N  
Sbjct: 716 SLKPKDGNYKNTY 728

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 72.6 bits (178), Expect = 1e-14
 Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 17/144 (11%)

Query: 44  NFYTIPEGIDLDT----QVLDLSSNNINVLQKEIFLQMGI---TNIQKLYLRKCKLEFVD 96
               IP   +  +      +D S N I    + I   M      N   + L   +++   
Sbjct: 630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP 689

Query: 97  DRAFRGVTNMDELDLSDNLLSTVP---------SLIYIPYLKSINLAHNPINQIS-SYSF 146
              F   + +  + LS+NL++++P         +      L +I+L  N +  +S  +  
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749

Query: 147 QSTPGIRYIDMSNCQIHTIYSEAF 170
            + P +  +D+S     +  ++  
Sbjct: 750 TTLPYLSNMDVSYNCFSSFPTQPL 773

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.8 bits (163), Expect = 1e-12
 Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 16/139 (11%)

Query: 44  NFYTIPEGIDLDT----QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA 99
           N    P    L       +LD   N +  L  E F       +  L L   ++E + +  
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHL--EAFGTN--VKLTDLKLDYNQIEEIPEDF 614

Query: 100 FRGVTNMDELDLSDNLLSTVPSLIYI---PYLKSINLAHNPINQISSYSFQSTPGIR--- 153
                 ++ L  S N L  +P++        + S++ ++N I         S    +   
Sbjct: 615 CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674

Query: 154 --YIDMSNCQIHTIYSEAF 170
              + +S  +I    +E F
Sbjct: 675 ASTVTLSYNEIQKFPTELF 693

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.4 bits (136), Expect = 3e-09
 Identities = 16/129 (12%), Positives = 40/129 (31%), Gaps = 14/129 (10%)

Query: 47  TIPEGIDLDT----QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD----- 97
           ++ +     T      +D+S N  +    +       + ++   +R  +    +      
Sbjct: 742 SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL---NSSQLKAFGIRHQRDAEGNRILRQW 798

Query: 98  -RAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYID 156
                   ++ +L +  N +  V   +  P L  +++A NP   I   S           
Sbjct: 799 PTGITTCPSLIQLQIGSNDIRKVDEKL-TPQLYILDIADNPNISIDVTSVCPYIEAGMYV 857

Query: 157 MSNCQIHTI 165
           +   +   I
Sbjct: 858 LLYDKTQDI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 3e-08
 Identities = 15/132 (11%), Positives = 42/132 (31%), Gaps = 7/132 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           +VL   +++  V  +    +    ++ +    + ++ +           ++  DL  + +
Sbjct: 350 KVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY-KKMFLDYDQRLNLSDLLQDAI 408

Query: 117 STVPSLIYIPYLKSINLAHNPI----NQISS--YSFQSTPGIRYIDMSNCQIHTIYSEAF 170
           +  P +  I     I+L    I    N+I+    + Q    ++ I  +N           
Sbjct: 409 NRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVD 468

Query: 171 YVMVLPGSNLTL 182
           +           
Sbjct: 469 WEDANSDYAKQY 480

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 19/133 (14%), Positives = 40/133 (30%), Gaps = 6/133 (4%)

Query: 50  EGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDEL 109
             I L    +   +N I  + K I     +T +Q +Y       + +        N D  
Sbjct: 421 SRISLKDTQIGNLTNRITFISKAIQ---RLTKLQIIYFANSPFTYDNIAVDWEDANSDYA 477

Query: 110 DLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
              +N   +  +L     L  + L + P            P ++ ++++  +  +     
Sbjct: 478 KQYENEELSWSNL---KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK 534

Query: 170 FYVMVLPGSNLTL 182
                L     T 
Sbjct: 535 ADWTRLADDEDTG 547

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 70.5 bits (173), Expect = 1e-14
 Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 4/150 (2%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           C     C    GK+ V+C  ++  ++P GI  DT+ LDL S  +  L    F   G+T +
Sbjct: 4   CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATF--RGLTKL 61

Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQ 140
             L L   +L+ +    F  +T +  L L++N L+++P  ++  +  L  + L  N +  
Sbjct: 62  TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS 121

Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
           + S  F     ++ + ++  Q+ +I + AF
Sbjct: 122 LPSGVFDRLTKLKELRLNTNQLQSIPAGAF 151

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 7/106 (6%)

Query: 37  TVECIDRNFYTIPEGI-DLDT--QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE 93
           T+   +    ++P G+ D  T    L L  N +  L   +F    +T +++L L   +L+
Sbjct: 87  TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF--DRLTKLKELRLNTNQLQ 144

Query: 94  FVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
            +   AF  +TN+  L LS N L +VP   +  +  L++I L  N 
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 68.1 bits (167), Expect = 4e-14
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 35/143 (24%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKE-IFLQM---- 77
           CP  C C+      TV+C  R    IP  I L T  L L+ N +  +  + +F ++    
Sbjct: 2   CPAMCHCE----GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLV 57

Query: 78  ------------------GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
                             G ++IQ+L L + K++ + ++ F G+  +  L+L DN +S V
Sbjct: 58  KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117

Query: 120 P-----SLIYIPYLKSINLAHNP 137
                  L     L S+NLA NP
Sbjct: 118 MPGSFEHL---NSLTSLNLASNP 137

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 63.0 bits (154), Expect = 2e-12
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 8/117 (6%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  CSC       TV+C  ++  ++P GI   TQVL L  N I  L+  +F ++  T +
Sbjct: 3   CPSQCSC----SGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRL--TQL 56

Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
            +L L   +L  +    F  +T + +L L+DN L ++P   +  +  L  I L +NP
Sbjct: 57  TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 63.0 bits (154), Expect = 2e-12
 Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 8/117 (6%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  CSC     +  V C +    ++P GI  D Q L L++N I  L+  +F  +   N+
Sbjct: 6   CPSQCSC----DQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHL--VNL 59

Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
           Q+LY    KL  +    F  +T + +LDL+DN L ++P   +  +  L  I L +NP
Sbjct: 60  QQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 62.3 bits (152), Expect = 3e-12
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 6/99 (6%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  CSC        + C  +   ++P GI      L+L SN +  L   +F ++  T +
Sbjct: 1   CPSRCSC----SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKL--TQL 54

Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS 121
            KL L + +++ + D  F  +T +  L L +N L ++P+
Sbjct: 55  TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPN 93

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.3 bits (157), Expect = 7e-12
 Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 19/146 (13%)

Query: 44  NFYTIPEGIDLDT----QVLDLSSNNINVLQKEIFLQM-----GITNIQKLYLRKCKLEF 94
               IP   D  +      +D S N I  +  + F  +        N+  + L   ++  
Sbjct: 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447

Query: 95  VDDRAFRGVTNMDELDLSDNLLSTVP---------SLIYIPYLKSINLAHNPINQI-SSY 144
                F   + +  ++L  N+L+ +P         +      L SI+L  N + ++   +
Sbjct: 448 FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF 507

Query: 145 SFQSTPGIRYIDMSNCQIHTIYSEAF 170
              + P +  ID+S        ++  
Sbjct: 508 RATTLPYLVGIDLSYNSFSKFPTQPL 533

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.9 bits (156), Expect = 8e-12
 Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 13/124 (10%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
            +L+   N +               +  L L   ++  +          ++ L  + N L
Sbjct: 333 GMLECLYNQLEGKLPAFG---SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL 389

Query: 117 STVPSLIYI---PYLKSINLAHNPINQISSYSFQSTPG-------IRYIDMSNCQIHTIY 166
             +P++        + +I+ ++N I  +   +F            +  I++SN QI    
Sbjct: 390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP 449

Query: 167 SEAF 170
            E F
Sbjct: 450 KELF 453

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 6e-11
 Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 12/135 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF-RGVTNMDELDLSDNL 115
             L+L+ N I  +            ++ L     KL+++ +    + V+ M  +D S N 
Sbjct: 356 ASLNLAYNQITEIPANFCGFT--EQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE 413

Query: 116 LSTVP--SLIYIPY-------LKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY 166
           + +V   +   +         + SINL++N I++     F +   +  I++    +  I 
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473

Query: 167 SEAFYVMVLPGSNLT 181
             +         N  
Sbjct: 474 KNSLKDENENFKNTY 488

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 21/117 (17%), Positives = 48/117 (41%), Gaps = 8/117 (6%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGIT------NIQKLYLRKCKL-EFVDDRAFRGVTNMDEL 109
           Q+++++ N     ++       +        IQ +Y+    L  F  + + + +  +  L
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335

Query: 110 DLSDNLLSTV-PSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           +   N L    P+      L S+NLA+N I +I +     T  +  +  ++ ++  I
Sbjct: 336 ECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI 392

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 13/122 (10%)

Query: 57  QVLDLSSNNINVLQKEIFLQM-----GITNIQKLYLRKCKL-EFVDDRAFRGVTNMDELD 110
             ++L  N +  + K               +  + LR  KL +  DD     +  +  +D
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519

Query: 111 LSDNLLSTVP-SLIYIPYLKSINLAHNPI---NQISSY---SFQSTPGIRYIDMSNCQIH 163
           LS N  S  P   +    LK   + +      N+            P +  + + +  I 
Sbjct: 520 LSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579

Query: 164 TI 165
            +
Sbjct: 580 KV 581

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 19/150 (12%), Positives = 51/150 (34%), Gaps = 34/150 (22%)

Query: 47  TIPEGIDLDT--QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE----------- 93
           +I +   +      +   SNNI  + K +     +T +++ Y+                 
Sbjct: 174 SIKKSSRITLKDTQIGQLSNNITFVSKAVM---RLTKLRQFYMGNSPFVAENICEAWENE 230

Query: 94  --------FVDDRAFRGVTNMDELDLSD-NLLSTVPSLIY-IPYLKSINLAHNPINQISS 143
                     +D  +  + ++ ++++ +   L+ +P+ +  +P ++ IN+A N       
Sbjct: 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290

Query: 144 Y--------SFQSTPGIRYIDMSNCQIHTI 165
                           I+ I +    + T 
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTF 320

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 19/113 (16%), Positives = 34/113 (30%), Gaps = 9/113 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           +VL L S+   V ++    + GI+       ++                 D  DL  + +
Sbjct: 108 EVLALGSHGEKVNERLFGPK-GISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166

Query: 117 STVPSLIYIP-------YLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQI 162
           ++ P    I            I    N I  +S  +      +R   M N   
Sbjct: 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSK-AVMRLTKLRQFYMGNSPF 218

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 15/140 (10%), Positives = 37/140 (26%), Gaps = 36/140 (25%)

Query: 44  NFYTIPEGIDLDT----QVLDLSSNNINVLQKEIF----LQM------------------ 77
               + +     T      +DLS N+ +    +      L+                   
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558

Query: 78  -----GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKS 130
                   ++ +L +    +  V+++      N+  LD+ DN   ++    +        
Sbjct: 559 PEGITLCPSLTQLQIGSNDIRKVNEKIT---PNISVLDIKDNPNISIDLSYVCPYIEAGM 615

Query: 131 INLAHNPINQISSYSFQSTP 150
             L ++    I         
Sbjct: 616 YMLFYDKTQDIRGCDALDIK 635

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 62.0 bits (151), Expect = 9e-12
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 6/99 (6%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  CSC       TV+C  +   ++P GI  + Q+L L  N I  L+  +F    + N+
Sbjct: 13  CPSQCSC----SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVF--DSLINL 66

Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS 121
           ++LYL   +L  +    F  +T +  LDL  N L+ +PS
Sbjct: 67  KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS 105

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 29/123 (23%)

Query: 21  ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVL--------------------- 59
           + CP  C+C        V C ++    +P+GI  D   L                     
Sbjct: 2   SRCPTECTCLDT----VVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLT 57

Query: 60  --DLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
             DLS+N I+ L  + F  M  T +  L L   +L  +  R F G+ ++  L L  N +S
Sbjct: 58  LIDLSNNRISTLSNQSFSNM--TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115

Query: 118 TVP 120
            VP
Sbjct: 116 VVP 118

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 60.5 bits (147), Expect = 3e-11
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 6/99 (6%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  CSC       TVEC  +   ++P GI   T  LDL +N++  L   +F    +T++
Sbjct: 1   CPSRCSC----SGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVF--DELTSL 54

Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS 121
            +LYL   KL+ + +  F  +T++  L+LS N L ++P+
Sbjct: 55  TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN 93

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 61.5 bits (149), Expect = 5e-11
 Identities = 18/153 (11%), Positives = 58/153 (37%), Gaps = 24/153 (15%)

Query: 47  TIPEGIDLDTQVLDLSSNNINVLQKEI----FLQMG----------ITNIQKLYLRKCKL 92
           ++P+ +     VL+++ N +  L +      +L               +++ L +   +L
Sbjct: 73  SLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQL 132

Query: 93  EFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGI 152
             + +        ++ ++  +N L+ +P L     L+ +++ +N +  +          +
Sbjct: 133 TMLPE----LPALLEYINADNNQLTMLPEL--PTSLEVLSVRNNQLTFLPE----LPESL 182

Query: 153 RYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCR 185
             +D+S   + ++ +          + +   CR
Sbjct: 183 EALDVSTNLLESLPAVPVRNHHSEETEIFFRCR 215

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 60.4 bits (146), Expect = 1e-10
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 15/118 (12%)

Query: 48  IPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107
           + E +      L L+  N++ L   +        I  L + +  L  + +       +++
Sbjct: 53  LKECLINQFSELQLNRLNLSSLPDNLP-----PQITVLEITQNALISLPEL----PASLE 103

Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
            LD  DN LST+P L     LK +++ +N +  +          + YI+  N Q+  +
Sbjct: 104 YLDACDNRLSTLPEL--PASLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTML 155

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.8 bits (116), Expect = 8e-07
 Identities = 15/115 (13%), Positives = 36/115 (31%), Gaps = 10/115 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV---TNMDELDLSD 113
           +VL + +N +  L +         +++ L +    LE +     R              +
Sbjct: 163 EVLSVRNNQLTFLPELP------ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRE 216

Query: 114 NLLSTVP-SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
           N ++ +P +++ +    +I L  NP++     S                      
Sbjct: 217 NRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDG 271

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.1 bits (109), Expect = 6e-06
 Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 17/121 (14%)

Query: 47  TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
            +PE   L  + ++  +N + +L +        T+++ L +R  +L F+ +       ++
Sbjct: 134 MLPELPAL-LEYINADNNQLTMLPELP------TSLEVLSVRNNQLTFLPE----LPESL 182

Query: 107 DELDLSDNLLSTVPSLIY-----IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQ 161
           + LD+S NLL ++P++                  N I  I   +  S      I + +  
Sbjct: 183 EALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPE-NILSLDPTCTIILEDNP 241

Query: 162 I 162
           +
Sbjct: 242 L 242

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.9 bits (145), Expect = 2e-10
 Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 16/119 (13%)

Query: 47  TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
           T+P+ +      L +  NN+  L            ++ L +   +L  +      G+  +
Sbjct: 54  TLPDCLPAHITTLVIPDNNLTSLPAL------PPELRTLEVSGNQLTSLPV-LPPGLLEL 106

Query: 107 DELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
                    L  +PS      L  + +  N +  +        PG++ + +S+ Q+ ++
Sbjct: 107 SIFSNPLTHLPALPS-----GLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL 156

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.8 bits (142), Expect = 5e-10
 Identities = 21/139 (15%), Positives = 51/139 (36%), Gaps = 17/139 (12%)

Query: 29  CKWKAGKRTVECIDRN--FYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
             W+      E   R      +   ++    VL++  + +  L   +       +I  L 
Sbjct: 13  SAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLP-----AHITTLV 67

Query: 87  LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSF 146
           +    L  +          +  L++S N L+++P L   P L  +++  NP+  + +   
Sbjct: 68  IPDNNLTSLPAL----PPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPA--- 118

Query: 147 QSTPGIRYIDMSNCQIHTI 165
               G+  + +   Q+ ++
Sbjct: 119 -LPSGLCKLWIFGNQLTSL 136

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 21/122 (17%), Positives = 50/122 (40%), Gaps = 17/122 (13%)

Query: 44  NFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103
              ++P       Q L +S N +  L          + + KL+    +L  +        
Sbjct: 132 QLTSLPVLPP-GLQELSVSDNQLASLPALP------SELCKLWAYNNQLTSLPM----LP 180

Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIH 163
           + + EL +SDN L+++P+L     L  +   +N +  + +       G++ + +S  ++ 
Sbjct: 181 SGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLT 234

Query: 164 TI 165
           ++
Sbjct: 235 SL 236

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.6 bits (126), Expect = 4e-08
 Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 16/109 (14%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           Q L +S N +  L          + + KL+    +L  +        + + EL +S N L
Sbjct: 184 QELSVSDNQLASLPTLP------SELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRL 233

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           +++P L     LK + ++ N +  +         G+  + +   Q+  +
Sbjct: 234 TSLPVL--PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRL 276

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.6 bits (126), Expect = 5e-08
 Identities = 17/93 (18%), Positives = 42/93 (45%), Gaps = 11/93 (11%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + L +S N +  L          + +++L +   +L  +        + +  L +  N L
Sbjct: 224 KELIVSGNRLTSLPVLP------SELKELMVSGNRLTSLPML----PSGLLSLSVYRNQL 273

Query: 117 STVP-SLIYIPYLKSINLAHNPINQISSYSFQS 148
           + +P SLI++    ++NL  NP+++ +  + + 
Sbjct: 274 TRLPESLIHLSSETTVNLEGNPLSERTLQALRE 306

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 8/109 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + L  ++N I+ +     L   +TN+ +L L   +L+ +       +TN+ +LDL++N +
Sbjct: 202 ESLIATNNQISDI---TPLG-ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI 255

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           S +  L  +  L  + L  N I+ IS         +  ++++  Q+  I
Sbjct: 256 SNLAPLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI 302

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.4 bits (142), Expect = 6e-10
 Identities = 18/127 (14%), Positives = 46/127 (36%), Gaps = 8/127 (6%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L+L+ N +  +       +   N+  L L    +  +       +T +  L   +N +
Sbjct: 290 TNLELNENQLEDI--SPISNL--KNLTYLTLYFNNISDIS--PVSSLTKLQRLFFYNNKV 343

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLP 176
           S V SL  +  +  ++  HN I+ ++     +   I  + +++             + +P
Sbjct: 344 SDVSSLANLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQAWTNAPVNYKANVSIP 401

Query: 177 GSNLTLD 183
            +   + 
Sbjct: 402 NTVKNVT 408

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.7 bits (135), Expect = 4e-09
 Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 8/109 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
               L   N+     +   Q  +  +  L   +  ++ +D      + N+ +++ S+N L
Sbjct: 27  MKTVLGKTNV----TDTVSQTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQL 80

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           + +  L  +  L  I + +N I  I+     +   +  + + N QI  I
Sbjct: 81  TDITPLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDI 127

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 21/126 (16%)

Query: 57  QVLDLSSNNINVLQ--------KEIFLQMGI---------TNIQKLYLRKCKLEFVDDRA 99
             L+LSSN I+ +         +++     +         T +++L +   K+  +    
Sbjct: 137 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS--V 194

Query: 100 FRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSN 159
              +TN++ L  ++N +S +  L  +  L  ++L  N +  I   +  S   +  +D++N
Sbjct: 195 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLAN 252

Query: 160 CQIHTI 165
            QI  +
Sbjct: 253 NQISNL 258

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             LDL++N I+ L     L  G+T + +L L   ++  +      G+T +  L+L++N L
Sbjct: 246 TDLDLANNQISNL---APLS-GLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQL 299

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
             +  +  +  L  + L  N I+ IS     S   ++ +   N ++  +
Sbjct: 300 EDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFYNNKVSDV 346

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 16/109 (14%), Positives = 45/109 (41%), Gaps = 8/109 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L      I  +     ++  + N+ ++     +L   D    + +T + ++ +++N +
Sbjct: 49  TTLQADRLGIKSID---GVE-YLNNLTQINFSNNQLT--DITPLKNLTKLVDILMNNNQI 102

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           + +  L  +  L  + L +N I  I     ++   +  +++S+  I  I
Sbjct: 103 ADITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDI 149

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 10/128 (7%)

Query: 40  CIDRNFYTIPEGIDLDT--QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD 97
             DR      +G++       ++ S+N +  +     L+  +T +  + +   ++   D 
Sbjct: 52  QADRLGIKSIDGVEYLNNLTQINFSNNQLTDI---TPLK-NLTKLVDILMNNNQIA--DI 105

Query: 98  RAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDM 157
                +TN+  L L +N ++ +  L  +  L  + L+ N I+ IS  +      ++ +  
Sbjct: 106 TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSF 163

Query: 158 SNCQIHTI 165
            N      
Sbjct: 164 GNQVTDLK 171

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 21/109 (19%), Positives = 52/109 (47%), Gaps = 9/109 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             + +++N I  +     L   +TN+  L L   ++  +D    + +TN++ L+LS N +
Sbjct: 93  VDILMNNNQIADI---TPLA-NLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTI 146

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           S + +L  +  L+ ++   N +  +      +   +  +D+S+ ++  I
Sbjct: 147 SDISALSGLTSLQQLSF-GNQVTDLK--PLANLTTLERLDISSNKVSDI 192

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 8/105 (7%)

Query: 61  LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
                IN    +IF    +    K  L K  +   D  +   +  +  L      + ++ 
Sbjct: 9   TQDTPIN----QIFTDTALAEKMKTVLGKTNVT--DTVSQTDLDQVTTLQADRLGIKSID 62

Query: 121 SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
            + Y+  L  IN ++N +  I+    ++   +  I M+N QI  I
Sbjct: 63  GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI 105

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 19/108 (17%), Positives = 47/108 (43%), Gaps = 5/108 (4%)

Query: 58  VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
           ++ L++  I    +           ++L LR  K+  +++     +   D +D SDN + 
Sbjct: 1   MVKLTAELIEQAAQYTNA----VRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIR 55

Query: 118 TVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
            +     +  LK++ + +N I +I     Q+ P +  + ++N  +  +
Sbjct: 56  KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 10/106 (9%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             +D S N I  L     L      ++ L +   ++  + +   + + ++ EL L++N L
Sbjct: 45  DAIDFSDNEIRKLDGFPLL----RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

Query: 117 STVPSLIYI---PYLKSINLAHNPINQISSYS---FQSTPGIRYID 156
             +  L  +     L  + +  NP+     Y        P +R +D
Sbjct: 101 VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.7 bits (143), Expect = 3e-10
 Identities = 17/109 (15%), Positives = 46/109 (42%), Gaps = 8/109 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L L+ N I  +     L   +T++        ++  +       +T ++ L + +N +
Sbjct: 180 YSLSLNYNQIEDI---SPLA-SLTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNNKI 233

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           + +  L  +  L  + +  N I+ I+  + +    ++ +++ + QI  I
Sbjct: 234 TDLSPLANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDI 280

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.9 bits (141), Expect = 6e-10
 Identities = 18/114 (15%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
                  N I  +     +   +T +  L +   K+  +       ++ +  L++  N +
Sbjct: 202 HYFTAYVNQITDI---TPVA-NMTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQI 255

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
           S + ++  +  LK +N+  N I+ IS     +   +  + ++N Q+     E  
Sbjct: 256 SDINAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVI 307

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.2 bits (139), Expect = 9e-10
 Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 6/109 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L + +N I  L     L   ++ +  L +   ++  ++  A + +T +  L++  N +
Sbjct: 224 NSLKIGNNKITDL---SPLA-NLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQI 277

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           S +  L  +  L S+ L +N +             +  + +S   I  I
Sbjct: 278 SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.8 bits (138), Expect = 1e-09
 Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           ++L++ SN I+ +   +   +  + +  L+L   +L   D     G+TN+  L LS N +
Sbjct: 268 KMLNVGSNQISDI--SVLNNL--SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323

Query: 117 STVPSLIYIPYLKSINLAHNPI 138
           + +  L  +  + S + A+  I
Sbjct: 324 TDIRPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.0 bits (136), Expect = 2e-09
 Identities = 21/109 (19%), Positives = 48/109 (44%), Gaps = 8/109 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
               L   ++     ++  Q  + +I KL +   K+  +       +TN++ L+L+ N +
Sbjct: 25  IRAVLQKASV----TDVVTQEELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQI 78

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           + +  L  +  L ++ +  N I  IS  + Q+   +R + ++   I  I
Sbjct: 79  TDISPLSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNEDNISDI 125

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.6 bits (135), Expect = 4e-09
 Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 7/109 (6%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L+L +N+       +     +T +  L + + K++ V       +T++  L L+ N +
Sbjct: 135 YSLNLGANHNLSDLSPLS---NMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQI 189

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
             +  L  +  L       N I  I+     +   +  + + N +I  +
Sbjct: 190 EDISPLASLTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNNKITDL 236

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.3 bits (129), Expect = 2e-08
 Identities = 16/112 (14%), Positives = 44/112 (39%), Gaps = 8/112 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L ++   +  +Q   +L    TN++ L L   ++  +       +  +  L +  N +
Sbjct: 47  TKLVVAGEKVASIQGIEYL----TNLEYLNLNGNQITDIS--PLSNLVKLTNLYIGTNKI 100

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSE 168
           + + +L  +  L+ + L  + I+ IS     +   +  +++      +  S 
Sbjct: 101 TDISALQNLTNLRELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSDLSP 150

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.5 bits (127), Expect = 3e-08
 Identities = 18/108 (16%), Positives = 43/108 (39%), Gaps = 10/108 (9%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L++ +N I+ +       +  T ++ L +   ++  +       ++ ++ L L++N L
Sbjct: 246 TWLEIGTNQISDI--NAVKDL--TKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQL 299

Query: 117 STVP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQI 162
                  +  +  L ++ L+ N I  I      S   +   D +N  I
Sbjct: 300 GNEDMEVIGGLTNLTTLFLSQNHITDIR--PLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 7/109 (6%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + L L+ +NI+ +     L   +T +  L L        D      +T ++ L ++++ +
Sbjct: 113 RELYLNEDNISDI---SPLA-NLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKV 167

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
             V  +  +  L S++L +N I  IS     S   + Y      QI  I
Sbjct: 168 KDVTPIANLTDLYSLSLNYNQIEDIS--PLASLTSLHYFTAYVNQITDI 214

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 2/62 (3%)

Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIH 163
                  L    ++ V +   +  +  + +A   +  I     +    + Y++++  QI 
Sbjct: 22  AEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQIT 79

Query: 164 TI 165
            I
Sbjct: 80  DI 81

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.6 bits (141), Expect = 5e-10
 Identities = 28/136 (20%), Positives = 48/136 (35%), Gaps = 13/136 (9%)

Query: 29  CKWKAGKRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
            K +     V  +     T+   ++  L    LDLS N +  L   +     +  ++ L 
Sbjct: 436 LKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPAL---AALRCLEVLQ 492

Query: 87  LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYI---PYLKSINLAHNPINQISS 143
                LE VD      +  + EL L +N L    ++  +   P L  +NL  N + Q   
Sbjct: 493 ASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550

Query: 144 YS---FQSTPGIRYID 156
                 +  P +  I 
Sbjct: 551 IQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.8 bits (118), Expect = 4e-07
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 30  KWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK 89
              A    +        ++ +    D +VL L+  ++ VL     L+  +  +  L L  
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL---CHLEQ-LLLVTHLDLSH 472

Query: 90  CKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSY-SFQS 148
            +L  +   A   +  ++ L  SDN L  V  +  +P L+ + L +N + Q ++     S
Sbjct: 473 NRLRALPP-ALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVS 531

Query: 149 TPGIRYIDMSN 159
            P +  +++  
Sbjct: 532 CPRLVLLNLQG 542

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 11/109 (10%), Positives = 34/109 (31%), Gaps = 3/109 (2%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L      +          +       L   + K    +        ++  L L+   L
Sbjct: 396 DPLLYEKETLQYFST--LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL 453

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           + +  L  +  +  ++L+HN +  +   +  +   +  +  S+  +  +
Sbjct: 454 TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 501

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.4 bits (139), Expect = 8e-10
 Identities = 38/184 (20%), Positives = 66/184 (35%), Gaps = 18/184 (9%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           QVL L  N I  +        G+TN+Q L +   ++  +       ++ +  L   DN +
Sbjct: 132 QVLYLDLNQITNISP----LAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKI 185

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLP 176
           S +  L  +P L  ++L +N I+ +S     +T  +  + ++N  I       FY   L 
Sbjct: 186 SDISPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ--PVFYNNNLV 241

Query: 177 GSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLS-----KDNSYLSVF 231
             N+          P  I    +   Y   N   N  +       +        +    F
Sbjct: 242 VPNVVKGPSGAPIAPATIS---DNGTYASPNLTWNLTSFINNVSYTFNQSVTFKNTTVPF 298

Query: 232 SGGV 235
           SG V
Sbjct: 299 SGTV 302

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 18/109 (16%), Positives = 46/109 (42%), Gaps = 8/109 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             +    +N+     +   Q  +  I  L      +  ++    + + N+  L+L DN +
Sbjct: 22  IKIAAGKSNVT----DTVTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQI 75

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           + +  L  +  +  + L+ NP+  +S  +      I+ +D+++ QI  +
Sbjct: 76  TDLAPLKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDV 122

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 19/109 (17%), Positives = 46/109 (42%), Gaps = 8/109 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L      +  ++    +Q  + N+  L L+  ++  +     + +T + EL+LS N L
Sbjct: 44  TTLSAFGTGVTTIE---GVQ-YLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPL 97

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
             V ++  +  +K+++L    I  ++         ++ + +   QI  I
Sbjct: 98  KNVSAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNI 144

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 19/109 (17%), Positives = 48/109 (44%), Gaps = 8/109 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L+LS N +    K +    G+ +I+ L L   ++  V      G++N+  L L  N +
Sbjct: 88  TELELSGNPL----KNVSAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQI 141

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           + +  L  +  L+ +++ +  ++ ++     +   +  +   + +I  I
Sbjct: 142 TNISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.8 bits (139), Expect = 9e-10
 Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L L+ N +     +I     + N+  L+L + K++  D  + + +  +  L L  N +
Sbjct: 68  TKLFLNGNKL----TDIKPLTNLKNLGWLFLDENKIK--DLSSLKDLKKLKSLSLEHNGI 121

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           S +  L+++P L+S+ L +N I  I+         +  + + + QI  I
Sbjct: 122 SDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI 168

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.7 bits (136), Expect = 3e-09
 Identities = 30/193 (15%), Positives = 55/193 (28%), Gaps = 9/193 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + L L +N I  +     L   +T +  L L   ++   D     G+T +  L LS N +
Sbjct: 134 ESLYLGNNKITDIT---VLS-RLTKLDTLSLEDNQIS--DIVPLAGLTKLQNLYLSKNHI 187

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQ---STPGIRYIDMSNCQIHTIYSEAFYVM 173
           S + +L  +  L  + L                     ++  D S      I  +  Y  
Sbjct: 188 SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEK 247

Query: 174 VLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVFSG 233
                +L       S    + +     K   H         +   +         +    
Sbjct: 248 PNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEA 307

Query: 234 GVDLAAASSPGGE 246
           G  + A   P  +
Sbjct: 308 GTRITAPKPPTKQ 320

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 55.9 bits (134), Expect = 4e-09
 Identities = 18/109 (16%), Positives = 44/109 (40%), Gaps = 8/109 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
              +L   ++     +   Q  + +I ++      ++ V     + + N+ +L L+ N L
Sbjct: 24  IKDNLKKKSV----TDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKL 77

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           + +  L  +  L  + L  N I  +S  S +    ++ + + +  I  I
Sbjct: 78  TDIKPLTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGISDI 124

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.7 bits (131), Expect = 9e-09
 Identities = 17/107 (15%), Positives = 42/107 (39%), Gaps = 8/107 (7%)

Query: 59  LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
               S  I    K+IF         K  L+K  +   D      + ++D++  +++ + +
Sbjct: 4   TITVSTPI----KQIFPDDAFAETIKDNLKKKSVT--DAVTQNELNSIDQIIANNSDIKS 57

Query: 119 VPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           V  + Y+P +  + L  N +  I      +   + ++ +   +I  +
Sbjct: 58  VQGIQYLPNVTKLFLNGNKLTDIK--PLTNLKNLGWLFLDENKIKDL 102

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.3 bits (130), Expect = 1e-08
 Identities = 18/109 (16%), Positives = 43/109 (39%), Gaps = 8/109 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L L  N I    K++     +  ++ L L    +  ++      +  ++ L L +N +
Sbjct: 90  GWLFLDENKI----KDLSSLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKI 143

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           + +  L  +  L +++L  N I+ I          ++ + +S   I  +
Sbjct: 144 TDITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL 190

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 55.7 bits (134), Expect = 3e-09
 Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 11/117 (9%)

Query: 57  QVLDLSSNNINVLQ--KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD---ELDL 111
             LDLS N     +        +    +Q L LR   +E                  LDL
Sbjct: 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235

Query: 112 SDNLLSTVPSLI---YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           S N L          +   L S+NL+   + Q+          +  +D+S  ++   
Sbjct: 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYNRLDRN 289

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.9 bits (132), Expect = 5e-09
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           Q LDLS N++             + +  L L    L+ V       ++    LDLS N L
Sbjct: 231 QGLDLSHNSLRDAAGAPSCDW-PSQLNSLNLSFTGLKQVPKGLPAKLS---VLDLSYNRL 286

Query: 117 STVPSLIYIPYLKSINLAHNPI 138
              PS   +P + +++L  NP 
Sbjct: 287 DRNPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.4 bits (123), Expect = 7e-08
 Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 11/130 (8%)

Query: 47  TIPEGIDLDTQVLDLSSNNINVLQKEI--FLQMGITNIQKLYLRKCKLEFVDDRAFRGVT 104
            + E    D  +L+L + +       +    Q     ++ L + +           R   
Sbjct: 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173

Query: 105 NMDELDLSDNLLSTVPSLI------YIPYLKSINLAHNPINQISSYSFQST---PGIRYI 155
            +  LDLSDN       LI        P L+ + L +  +   S            ++ +
Sbjct: 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233

Query: 156 DMSNCQIHTI 165
           D+S+  +   
Sbjct: 234 DLSHNSLRDA 243

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 10/137 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL----EFVDDRAFRGVTNMDELDLS 112
           Q L L +  +        L+    ++  L LR         ++ +        +  L ++
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 113 DNLLSTVP--SLIYIPYLKSINLAHNPI----NQISSYSFQSTPGIRYIDMSNCQIHTIY 166
                      +   P L +++L+ NP       IS+      P ++ + + N  + T  
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217

Query: 167 SEAFYVMVLPGSNLTLD 183
                +         LD
Sbjct: 218 GVCSALAAARVQLQGLD 234

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.7 bits (132), Expect = 6e-09
 Identities = 23/109 (21%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L L+ N +     +I     + N+  L+L + K++ +   + + +  +  L L  N +
Sbjct: 71  TKLFLNGNKL----TDIKPLANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGI 124

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           S +  L+++P L+S+ L +N I  I+         +  + + + QI  I
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI 171

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.7 bits (132), Expect = 6e-09
 Identities = 17/109 (15%), Positives = 44/109 (40%), Gaps = 8/109 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
              +L   ++     +   Q  + +I ++      ++ V     + + N+ +L L+ N L
Sbjct: 27  IKDNLKKKSV----TDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKL 80

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           + +  L  +  L  + L  N +  +S  S +    ++ + + +  I  I
Sbjct: 81  TDIKPLANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGISDI 127

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 8/109 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L L  N +    K++     +  ++ L L    +  ++      +  ++ L L +N +
Sbjct: 93  GWLFLDENKV----KDLSSLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKI 146

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           + +  L  +  L +++L  N I+ I          ++ + +S   I  +
Sbjct: 147 TDITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL 193

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 14/105 (13%), Positives = 40/105 (38%), Gaps = 8/105 (7%)

Query: 61  LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
                I     +IF         K  L+K  +   D      + ++D++  +++ + +V 
Sbjct: 9   TVPTPIK----QIFSDDAFAETIKDNLKKKSVT--DAVTQNELNSIDQIIANNSDIKSVQ 62

Query: 121 SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
            + Y+P +  + L  N +  I      +   + ++ +   ++  +
Sbjct: 63  GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL 105

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 6/109 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + L L +N I  +     L   +T +  L L   ++  +      G+T +  L LS N +
Sbjct: 137 ESLYLGNNKITDIT---VLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           S + +L  +  L  + L              +      +  ++  + T 
Sbjct: 191 SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 18/120 (15%), Positives = 46/120 (38%), Gaps = 9/120 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + L ++ N +  L            + +L+L   +L   D      + N++ L + +N L
Sbjct: 88  EELSVNRNRLKNLNGIPSA-----CLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKL 140

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLP 176
            ++  L ++  L+ ++L  N I             + +ID++  +      +    + + 
Sbjct: 141 KSIVMLGFLSKLEVLDLHGNEITNTG--GLTRLKKVNWIDLTGQKCVNEPVKYQPELYIT 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 16/105 (15%), Positives = 46/105 (43%), Gaps = 8/105 (7%)

Query: 61  LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
                IN    ++F   G+ N  K  L K  +   D  + + ++ +   +  ++ + ++ 
Sbjct: 4   QRPTPIN----QVFPDPGLANAVKQNLGKQSVT--DLVSQKELSGVQNFNGDNSNIQSLA 57

Query: 121 SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
            + +   LK ++L+HN I+ +S    +    +  + ++  ++  +
Sbjct: 58  GMQFFTNLKELHLSHNQISDLS--PLKDLTKLEELSVNRNRLKNL 100

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 15/109 (13%), Positives = 43/109 (39%), Gaps = 9/109 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
              +L   ++     ++  Q  ++ +Q        ++ +     +  TN+ EL LS N +
Sbjct: 22  VKQNLGKQSV----TDLVSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQI 75

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           S +  L  +  L+ +++  N +  ++         +  + + N ++   
Sbjct: 76  SDLSPLKDLTKLEELSVNRNRLKNLNGIPSAC---LSRLFLDNNELRDT 121

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 15/127 (11%)

Query: 41  IDRNFYTIPEGIDLDT-----QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFV 95
           +D       +   L       + L L +  +  +      ++    ++KL L + ++   
Sbjct: 31  LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKL--PKLKKLELSENRIFGG 86

Query: 96  DDRAFRGVTNMDELDLSDNLLSTVPSLIYI---PYLKSINLAHNPINQISSYS---FQST 149
            D     + N+  L+LS N L  + +L  +     LKS++L +  +  ++ Y    F+  
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146

Query: 150 PGIRYID 156
           P + Y+D
Sbjct: 147 PQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 4/101 (3%)

Query: 69  LQKEIFLQMG---ITNIQKLYLRKCKLEFVDDRAFRGV-TNMDELDLSDNLLSTVPSLIY 124
           +++ I L++       +++L L  CK              N++ L L +  L +V +L  
Sbjct: 10  MKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPK 69

Query: 125 IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           +P LK + L+ N I        +  P + ++++S  ++  I
Sbjct: 70  LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 16/118 (13%), Positives = 52/118 (44%), Gaps = 14/118 (11%)

Query: 48  IPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107
           + + +D     L+L++  ++ L +         +++ L      L  + +   + + ++ 
Sbjct: 65  LRDCLDRQAHELELNNLGLSSLPEL------PPHLESLVASCNSLTELPE-LPQSLKSLL 117

Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
             + +   LS +P     P L+ + +++N + ++     Q++  ++ ID+ N  +  +
Sbjct: 118 VDNNNLKALSDLP-----PLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKL 168

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 19/109 (17%), Positives = 49/109 (44%), Gaps = 14/109 (12%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + +   +N +  L  E+     +  +  +Y     L+ + D       +++ L++ DN L
Sbjct: 218 ESIVAGNNILEEL-PELQ---NLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYL 269

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           + +P L     L  ++++ N  + +S       P + Y++ S+ +I ++
Sbjct: 270 TDLPEL--PQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL 312

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 15/109 (13%), Positives = 44/109 (40%), Gaps = 12/109 (11%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + +   +N +  L +   L      +  +Y     L+ + D       +++ +   +N+L
Sbjct: 176 EFIAAGNNQLEELPELQNL----PFLTAIYADNNSLKKLPD----LPLSLESIVAGNNIL 227

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
             +P L  +P+L +I   +N +  +        P +  +++ +  +  +
Sbjct: 228 EELPELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDL 272

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 14/122 (11%), Positives = 39/122 (31%), Gaps = 23/122 (18%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD---------------RAFR 101
           + L  S N++  + +         N+++L++    L    D                   
Sbjct: 340 ERLIASFNHLAEVPELP------QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393

Query: 102 GVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQ 161
              N+ +L +  N L   P +     ++ + +    +     ++ ++T  +      +  
Sbjct: 394 LPQNLKQLHVETNPLREFPDIP--ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

Query: 162 IH 163
            H
Sbjct: 452 HH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 18/109 (16%), Positives = 44/109 (40%), Gaps = 16/109 (14%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             LD+S N  + L +         N+  L     ++  + D       +++EL++S+N L
Sbjct: 280 TFLDVSENIFSGLSELP------PNLYYLNASSNEIRSLCDL----PPSLEELNVSNNKL 329

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
             +P+L   P L+ +  + N + ++          ++ + +    +   
Sbjct: 330 IELPAL--PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREF 372

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.5 bits (124), Expect = 9e-08
 Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 15/122 (12%)

Query: 44  NFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103
              ++PE      + L  S N++  L +       + ++         L  +        
Sbjct: 82  GLSSLPELPP-HLESLVASCNSLTELPELPQ---SLKSLLVDNNNLKALSDL-------P 130

Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIH 163
             ++ L +S+N L  +P L    +LK I++ +N + ++        P + +I   N Q+ 
Sbjct: 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLE 186

Query: 164 TI 165
            +
Sbjct: 187 EL 188

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 25/149 (16%), Positives = 48/149 (32%), Gaps = 39/149 (26%)

Query: 49  PEGIDLDT-QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107
           P  +     Q     S+N+  +  E      + +  + Y    + E            M 
Sbjct: 5   PRNVSNTFLQEPLRHSSNLTEMPVEAE---NVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 108 -------------ELDLSDNLLSTVPSLI------------------YIPYLKSINLAHN 136
                        EL+L++  LS++P L                       LKS+ + +N
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNN 121

Query: 137 PINQISSYSFQSTPGIRYIDMSNCQIHTI 165
            +  +S       P + Y+ +SN Q+  +
Sbjct: 122 NLKALSD----LPPLLEYLGVSNNQLEKL 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 10/106 (9%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL- 115
           + L   +  +  +      ++    ++KL L   ++    +       N+  L+LS N  
Sbjct: 45  EFLSTINVGLTSI--ANLPKL--NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

Query: 116 --LSTVPSLIYIPYLKSINLAHNPINQISSYS---FQSTPGIRYID 156
             LST+  L  +  LKS++L +  +  ++ Y    F+  P + Y+D
Sbjct: 101 KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.0 bits (112), Expect = 7e-07
 Identities = 12/86 (13%), Positives = 37/86 (43%), Gaps = 1/86 (1%)

Query: 81  NIQKLYLRKCKLEFVDDRA-FRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIN 139
           ++++L L   +               ++ L   +  L+++ +L  +  LK + L+ N ++
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVS 77

Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTI 165
                  +  P + ++++S  +I  +
Sbjct: 78  GGLEVLAEKCPNLTHLNLSGNKIKDL 103

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 17/112 (15%), Positives = 51/112 (45%), Gaps = 9/112 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + L +++ +         +  G++N+++L +    +         G+T++  LD+S +  
Sbjct: 69  KDLTINNIHATNYN---PIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124

Query: 117 S--TVPSLIYIPYLKSINLAHNPINQISSYS-FQSTPGIRYIDMSNCQIHTI 165
               +  +  +P + SI+L++N    I+     ++ P ++ +++    +H  
Sbjct: 125 DDSILTKINTLPKVNSIDLSYN--GAITDIMPLKTLPELKSLNIQFDGVHDY 174

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 15/107 (14%), Positives = 42/107 (39%), Gaps = 5/107 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN-L 115
           + L +   ++   +      +  T++  L +     +         +  ++ +DLS N  
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGL--TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

Query: 116 LSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQI 162
           ++ +  L  +P LKS+N+  + ++       +  P +  +   +  I
Sbjct: 149 ITDIMPLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 9e-06
 Identities = 9/85 (10%), Positives = 25/85 (29%), Gaps = 3/85 (3%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
            +LD+S +  +         +    +  + L        D    + +  +  L++  + +
Sbjct: 115 TLLDISHSAHDDSILTKINTL--PKVNSIDLSYNGA-ITDIMPLKTLPELKSLNIQFDGV 171

Query: 117 STVPSLIYIPYLKSINLAHNPINQI 141
                +   P L  +      I   
Sbjct: 172 HDYRGIEDFPKLNQLYAFSQTIGGK 196

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 49.0 bits (117), Expect = 8e-08
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 23 CPLGCSCKWKAGKRTVECIDRN--FYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
          CP  CSC        V+C  R   + ++P    +DT  L L+ NN+  L   +   +   
Sbjct: 2  CPAPCSCA----GTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDAL--P 55

Query: 81 NIQKLYLR 88
           ++  +L 
Sbjct: 56 ALRTAHLG 63

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 12/109 (11%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             LD S N I  L            + +L      +  +D         +  LD S N L
Sbjct: 173 TTLDCSFNKITELDVS-----QNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKL 224

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           + +  +  +  L   + + NP+ ++   +      +  +      +  I
Sbjct: 225 TEID-VTPLTQLTYFDCSVNPLTELDVSTLSK---LTTLHCIQTDLLEI 269

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 11/109 (10%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L+  +N +  L            +  L   +  L  +D       T + ELD   N  
Sbjct: 109 TYLNCDTNKLTKLDVS-----QNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKK 160

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
            T   +     L +++ +    N+I+         +  ++     I  +
Sbjct: 161 ITKLDVTPQTQLTTLDCSF---NKITELDVSQNKLLNRLNCDTNNITKL 206

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 11/109 (10%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             LD  +++I  +   I     +T + KL      +  +D       TN+  L    N L
Sbjct: 45  TSLDCHNSSITDM-TGIE---KLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKL 97

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           + +  +  +  L  +N      N+++       P + Y++ +   +  I
Sbjct: 98  TNLD-VTPLTKLTYLNCDT---NKLTKLDVSQNPLLTYLNCARNTLTEI 142

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 13/109 (11%), Positives = 32/109 (29%), Gaps = 11/109 (10%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
              D S N +  L          + +  L+  +  L  +D       T +          
Sbjct: 236 TYFDCSVNPLTELDVSTL-----SKLTTLHCIQTDLLEID---LTHNTQLIYFQAEGCRK 287

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
                + +   L  ++        I+       P + Y+ ++N ++  +
Sbjct: 288 IKELDVTHNTQLYLLDCQA---AGITELDLSQNPKLVYLYLNNTELTEL 333

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 8/93 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
            +LD  +  I     E+ L      +  LYL   +L  +D       T +  L   +  +
Sbjct: 300 YLLDCQAAGI----TELDLS-QNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHI 351

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQST 149
               S+  IP L +   A      +   +  + 
Sbjct: 352 QDFSSVGKIPALNNNFEAEGQTITMPKETLTNN 384

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 8/85 (9%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 81  NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQ 140
           N         +++  D  +   +  +  LD  ++ ++ +  +  +  L  +       N 
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTS---NN 75

Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTI 165
           I++        + Y+   + ++  +
Sbjct: 76  ITTLDLSQNTNLTYLACDSNKLTNL 100

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 12/109 (11%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L  +SNNI  L      Q   TN+  L     KL  +D      +T +  L+   N L
Sbjct: 67  TKLICTSNNITTLD---LSQN--TNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKL 118

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           + +      P L  +N A    N ++         +  +D    +  T 
Sbjct: 119 TKLDVSQ-NPLLTYLNCAR---NTLTEIDVSHNTQLTELDCHLNKKITK 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 17/113 (15%), Positives = 46/113 (40%), Gaps = 18/113 (15%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           ++L L  N I  ++    L      +++L++   ++  +       + N+  L +S+N +
Sbjct: 73  RILSLGRNLIKKIEN---LDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKI 127

Query: 117 STVPSLIYI---PYLKSINLAHNPINQISSYSFQST----------PGIRYID 156
           +    +  +     L+ + LA NP+      +  ++          P ++ +D
Sbjct: 128 TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 18/87 (20%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + L LS+NNI  +     L  G+ N++ L L +  ++ +++        ++EL +S N +
Sbjct: 51  KHLALSTNNIEKIS---SLS-GMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQI 105

Query: 117 STVPSLIYIPYLKSINLAHNPINQISS 143
           +++  +  +  L+ + +++N I     
Sbjct: 106 ASLSGIEKLVNLRVLYMSNNKITNWGE 132

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 12/95 (12%)

Query: 71  KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKS 130
           +++ L   I  I+K+           D     +     L LS N +  + SL  +  L+ 
Sbjct: 26  EKVELHGMIPPIEKM-----------DATLSTLKACKHLALSTNNIEKISSLSGMENLRI 74

Query: 131 INLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           ++L  N I +I +        +  + +S  QI ++
Sbjct: 75  LSLGRNLIKKIENLD-AVADTLEELWISYNQIASL 108

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 25/115 (21%), Positives = 52/115 (45%), Gaps = 18/115 (15%)

Query: 57  QVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV------TNMDEL 109
           +VLDLS+N+I+        L  G   ++ L +   K+         G        N++ L
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS--------GDVDVSRCVNLEFL 205

Query: 110 DLSDNLLS-TVPSLIYIPYLKSINLAHNPIN-QISSYSFQSTPGIRYIDMSNCQI 162
           D+S N  S  +P L     L+ ++++ N ++   S  +  +   ++ +++S+ Q 
Sbjct: 206 DVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQF 259

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 17/111 (15%), Positives = 47/111 (42%), Gaps = 7/111 (6%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE---FVDDRAFRGVTNMDELDLSD 113
           + L++SSN ++    ++   + + +++ L L    +     V      G   +  L +S 
Sbjct: 129 KFLNVSSNTLD-FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187

Query: 114 NLLSTVPSLIYIPYLKSINLAHNPIN-QISSYSFQSTPGIRYIDMSNCQIH 163
           N +S    +     L+ ++++ N  +  I          ++++D+S  ++ 
Sbjct: 188 NKISGDVDVSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLS 236

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 10/114 (8%)

Query: 57  QVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLE-FVDDRAFRGVTNMDELDLSDN 114
             LDLS N+    +          + ++ L L        +       +  +  LDLS N
Sbjct: 297 TGLDLSGNHFYGAVPPFFG---SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353

Query: 115 LLS-TVPSLIY--IPYLKSINLAHNPIN-QISSYSFQST-PGIRYIDMSNCQIH 163
             S  +P  +      L +++L+ N  +  I     Q+    ++ + + N    
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 6/110 (5%)

Query: 57  QVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
             LDLSSNN +  +   +  Q     +Q+LYL+               + +  L LS N 
Sbjct: 371 LTLDLSSNNFSGPILPNLC-QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429

Query: 116 LS-TVP-SLIYIPYLKSINLAHNPIN-QISSYSFQSTPGIRYIDMSNCQI 162
           LS T+P SL  +  L+ + L  N +  +I          +  + +    +
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ-ELMYVKTLETLILDFNDL 478

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 6/109 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + LD+SSNN +     +      + +Q L +   KL     RA    T +  L++S N  
Sbjct: 203 EFLDVSSNNFSTGIPFLG---DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259

Query: 117 S-TVPSLIYIPYLKSINLAHNPIN-QISSYSFQSTPGIRYIDMSNCQIH 163
              +P L  +  L+ ++LA N    +I  +   +   +  +D+S    +
Sbjct: 260 VGPIPPLP-LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 17/130 (13%), Positives = 47/130 (36%), Gaps = 6/130 (4%)

Query: 36  RTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFV 95
            T+          P+    +T   +L   ++     +      + +I ++      ++ V
Sbjct: 1   ETITVSTPIKQIFPDDAFAETIKANLKKKSVTDAVTQN----ELNSIDQIIANNSDIKSV 56

Query: 96  DDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYI 155
                + + N+  L L  N L  + +L  +  L  + L  N +  + +  F     ++ +
Sbjct: 57  Q--GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114

Query: 156 DMSNCQIHTI 165
            +   Q+ ++
Sbjct: 115 VLVENQLQSL 124

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 36/148 (24%)

Query: 21  ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDL-----------------------DTQ 57
              P     +            ++        +L                       + +
Sbjct: 11  QIFPDDAFAE----TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVR 66

Query: 58  VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
            L L  N ++ +         +TN+  L L   +L+ + +  F  +TN+ EL L +N L 
Sbjct: 67  YLALGGNKLHDI--SAL--KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122

Query: 118 TVPSLIY--IPYLKSINLAHNPINQISS 143
           ++P  ++  +  L  +NLAH   NQ+ S
Sbjct: 123 SLPDGVFDKLTNLTYLNLAH---NQLQS 147

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 37  TVECIDRNFYTIPEGI-DL--DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE 93
            +  ++    ++P+G+ D   +   L+L+ N +  L K +F ++  TN+ +L L   +L+
Sbjct: 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL--TNLTELDLSYNQLQ 170

Query: 94  FVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
            + +  F  +T + +L L  N L +VP  ++  +  L+ I L  NP
Sbjct: 171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 38.8 bits (91), Expect = 9e-04
 Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 55  DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
           +   L L+ N +  L   +F    +TN+++L L + +L+ + D  F  +TN+  L+L+ N
Sbjct: 86  NLTYLILTGNQLQSLPNGVF--DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143

Query: 115 LLSTVPS 121
            L ++P 
Sbjct: 144 QLQSLPK 150

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 5/105 (4%)

Query: 59  LDLSSNNINVLQK--EIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             + +     L+   ++           L LR   L    D     ++++  + +    L
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGL 116

Query: 117 STVPSLI-YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNC 160
             +P  +     L+++ LA NP+  + + S  S   +R + +  C
Sbjct: 117 MELPDTMQQFAGLETLTLARNPLRALPA-SIASLNRLRELSIRAC 160

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 22/114 (19%), Positives = 50/114 (43%), Gaps = 14/114 (12%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLE--------FVDDRAFRGVTNMD 107
           + L L+ N +  L   I     +  +++L +R C +L                +G+ N+ 
Sbjct: 130 ETLTLARNPLRALPASIA---SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186

Query: 108 ELDLSDNLLSTVPSLI-YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNC 160
            L L    + ++P+ I  +  LKS+ + ++P++ +   +    P +  +D+  C
Sbjct: 187 SLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGC 239

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 39.1 bits (92), Expect = 9e-04
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 8/94 (8%)

Query: 47  TIPEGI-DLDTQVLDLSSNNINVLQKEIFLQMG-ITNIQKLYLRKCKLEFVDDRAFRGVT 104
            IP    +L+   +DLS N    L+ +  +  G   N QK++L K  L F D        
Sbjct: 189 KIPPTFANLNLAFVDLSRNM---LEGDASVLFGSDKNTQKIHLAKNSLAF-DLGKVGLSK 244

Query: 105 NMDELDLSDNLLS-TVP-SLIYIPYLKSINLAHN 136
           N++ LDL +N +  T+P  L  + +L S+N++ N
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.97
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.94
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.94
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.92
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.92
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.92
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.92
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.91
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.91
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.91
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.89
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.88
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.88
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.87
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.87
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.87
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.86
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.85
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.85
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.84
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.84
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.83
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.82
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.82
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.82
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.81
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.81
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.81
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.81
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.8
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.8
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.8
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.79
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.78
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.78
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.78
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.77
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.76
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.76
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.75
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.75
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.75
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.74
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.74
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.74
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.73
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.73
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.73
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.72
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.72
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.71
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.71
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.71
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.71
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.71
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.7
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.7
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.68
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.67
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.67
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.66
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.66
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.66
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.65
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.62
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.62
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.62
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.62
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.61
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.59
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.58
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.58
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.57
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.57
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.53
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.51
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.5
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.49
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.48
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.45
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.41
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.4
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.38
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.36
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.32
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.31
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	99.3
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.29
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.29
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.26
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.25
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.86
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.84
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.6
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.42
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.4
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.32
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.25
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.25
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.25
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.24
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.22
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.16
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.02
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.86
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.85
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.82
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.8
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.42
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.27
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.27
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.72
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	93.06
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	84.98
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	82.03
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	81.69

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.97  E-value=1.4e-29  Score=207.36  Aligned_cols=171  Identities=20%  Similarity=0.413  Sum_probs=160.6

Q ss_pred             CCCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhh
Q psy14765         20 QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA   99 (269)
Q Consensus        20 ~~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~   99 (269)
                      +.+||..|+|.    ...|+|++++++++|..++++++.|++++|.|+.+++..|.  ++++|+.|++++|+|+.+.+.+
T Consensus         2 ~~~CP~~C~C~----~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~--~l~~L~~L~Ls~N~i~~~~~~~   75 (220)
T 2v9t_B            2 SLHCPAACTCS----NNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFS--PYKKLRRIDLSNNQISELAPDA   75 (220)
T ss_dssp             CCCSCTTSEEE----TTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSST--TCTTCCEEECCSSCCCEECTTT
T ss_pred             CCCCCCCCEEC----CCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhh--CCCCCCEEECCCCcCCCcCHHH
Confidence            45899999998    68999999999999999999999999999999999999998  8999999999999999999999


Q ss_pred             hcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCC
Q psy14765        100 FRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPG  177 (269)
Q Consensus       100 ~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l  177 (269)
                      |.++++|++|+|++|.|+.++...|  +++|+.|+|++|+|+++.+..|..+++|+.|+|++|++++++++.|..++. +
T Consensus        76 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L  154 (220)
T 2v9t_B           76 FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA-I  154 (220)
T ss_dssp             TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT-C
T ss_pred             hhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCC-C
Confidence            9999999999999999999999887  999999999999999999999999999999999999999999998988876 7


Q ss_pred             CeeEEeeccccCCCcccccee
Q psy14765        178 SNLTLDCRVQSATPCRIMWSI  198 (269)
Q Consensus       178 ~~l~l~~n~~~~~~~~~~~~~  198 (269)
                      +.+.+++|++. +.|.+.|+.
T Consensus       155 ~~L~L~~N~~~-c~c~l~~l~  174 (220)
T 2v9t_B          155 QTMHLAQNPFI-CDCHLKWLA  174 (220)
T ss_dssp             CEEECCSSCEE-CSGGGHHHH
T ss_pred             CEEEeCCCCcC-CCCccHHHH
Confidence            99999999965 467888874

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.96  E-value=4.6e-28  Score=198.34  Aligned_cols=170  Identities=28%  Similarity=0.485  Sum_probs=156.5

Q ss_pred             CCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccc-cccccccCCCcccEEEcccccccccchhh
Q psy14765         21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQ-KEIFLQMGITNIQKLYLRKCKLEFVDDRA   99 (269)
Q Consensus        21 ~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~-~~~f~~~~l~~L~~L~L~~N~i~~~~~~~   99 (269)
                      .+||..|+|.    .++++|+++.++++|..++..++.|++++|.|+.++ ...|.  ++++|+.|++++|+|+.+++.+
T Consensus         3 ~~CP~~C~C~----~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~--~l~~L~~L~L~~N~i~~i~~~~   76 (220)
T 2v70_A            3 LACPEKCRCE----GTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFK--KLPQLRKINFSNNKITDIEEGA   76 (220)
T ss_dssp             -CCCTTCEEE----TTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGG--GCTTCCEEECCSSCCCEECTTT
T ss_pred             CCCCCCCEEC----CCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhc--cCCCCCEEECCCCcCCEECHHH
Confidence            5799999998    579999999999999999999999999999999884 56787  8999999999999999999999


Q ss_pred             hcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCC
Q psy14765        100 FRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPG  177 (269)
Q Consensus       100 ~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l  177 (269)
                      |.++++|++|+|++|.++.++...|  +++|+.|+|++|+|+++.+..|..+++|+.|+|++|+++++++..|..++. +
T Consensus        77 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L  155 (220)
T 2v70_A           77 FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS-L  155 (220)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTT-C
T ss_pred             hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCC-C
Confidence            9999999999999999999998877  999999999999999999999999999999999999999999999988876 7


Q ss_pred             CeeEEeeccccCCCcccccee
Q psy14765        178 SNLTLDCRVQSATPCRIMWSI  198 (269)
Q Consensus       178 ~~l~l~~n~~~~~~~~~~~~~  198 (269)
                      +.+.+++|.+.+ .|.+.|+.
T Consensus       156 ~~L~L~~N~l~c-~c~l~~l~  175 (220)
T 2v70_A          156 STLNLLANPFNC-NCYLAWLG  175 (220)
T ss_dssp             CEEECCSCCEEC-SGGGHHHH
T ss_pred             CEEEecCcCCcC-CCchHHHH
Confidence            999999998654 57777763

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=3.2e-26  Score=205.73  Aligned_cols=186  Identities=27%  Similarity=0.503  Sum_probs=163.8

Q ss_pred             CCCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhh
Q psy14765         20 QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA   99 (269)
Q Consensus        20 ~~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~   99 (269)
                      +.+||..|.|.  .....|+|++++++.+|.+++++++.|++++|+++.+++..|.  ++++|++|+|++|+|+.+++.+
T Consensus        32 ~~~Cp~~C~C~--~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~~~  107 (440)
T 3zyj_A           32 AQTCPSVCSCS--NQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFK--HLRHLEILQLSRNHIRTIEIGA  107 (440)
T ss_dssp             -CCCCSSSEEC--TTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTS--SCSSCCEEECCSSCCCEECGGG
T ss_pred             cccCCCCCEeC--CCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhh--CCCCCCEEECCCCcCCccChhh
Confidence            35899999997  3356899999999999999999999999999999999999998  8999999999999999999999


Q ss_pred             hcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccC-CcceeeCcccccccccC
Q psy14765        100 FRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSN-CQIHTIYSEAFYVMVLP  176 (269)
Q Consensus       100 ~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~~  176 (269)
                      |.++++|++|+|++|+++.++...|  +++|+.|++++|+++.+++..|.++++|+.|++++ |.+..+++..|..+.. 
T Consensus       108 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~-  186 (440)
T 3zyj_A          108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN-  186 (440)
T ss_dssp             GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS-
T ss_pred             ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc-
Confidence            9999999999999999999998877  99999999999999999998899999999999998 6788888888888876 


Q ss_pred             CCeeEEeeccccCCCccccceecccccccccccCcccc
Q psy14765        177 GSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKIN  214 (269)
Q Consensus       177 l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~  214 (269)
                      ++.+.++.|.+...+.    +.....++.+++++|.+.
T Consensus       187 L~~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~N~l~  220 (440)
T 3zyj_A          187 LRYLNLAMCNLREIPN----LTPLIKLDELDLSGNHLS  220 (440)
T ss_dssp             CCEEECTTSCCSSCCC----CTTCSSCCEEECTTSCCC
T ss_pred             cCeecCCCCcCccccc----cCCCcccCEEECCCCccC
Confidence            7888888888776652    233334667777777664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.94  E-value=9e-27  Score=204.26  Aligned_cols=170  Identities=26%  Similarity=0.407  Sum_probs=152.4

Q ss_pred             cccCCCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccc
Q psy14765         17 SVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD   96 (269)
Q Consensus        17 ~~~~~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~   96 (269)
                      +....+||..|.|.    .+.++|++++++.+|..++..++.|++++|+|+.+++..|. .++++|+.|+|++|+|+.++
T Consensus         6 ~~~~~~Cp~~C~C~----~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~-~~l~~L~~L~L~~N~i~~i~   80 (361)
T 2xot_A            6 GRSVVSCPANCLCA----SNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTP-TRLTNLHSLLLSHNHLNFIS   80 (361)
T ss_dssp             -CCCTTCCTTCEEE----TTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSS-SCCTTCCEEECCSSCCCEEC
T ss_pred             CCcCCCCCCCCEEC----CCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhh-hcccccCEEECCCCcCCccC
Confidence            34456899999998    67999999999999999999999999999999999998872 04799999999999999999


Q ss_pred             hhhhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCccccc---
Q psy14765         97 DRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY---  171 (269)
Q Consensus        97 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~---  171 (269)
                      +.+|.++++|++|+|++|+|+.++...|  +++|+.|+|++|+|+++.+..|.++++|+.|+|++|+|+.++...|.   
T Consensus        81 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~  160 (361)
T 2xot_A           81 SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN  160 (361)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC---
T ss_pred             hhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcc
Confidence            9999999999999999999999998877  99999999999999999999999999999999999999999988873   


Q ss_pred             ccccCCCeeEEeeccccCCCc
Q psy14765        172 VMVLPGSNLTLDCRVQSATPC  192 (269)
Q Consensus       172 ~l~~~l~~l~l~~n~~~~~~~  192 (269)
                      .++. ++.++++.|.+...+.
T Consensus       161 ~l~~-L~~L~L~~N~l~~l~~  180 (361)
T 2xot_A          161 KLPK-LMLLDLSSNKLKKLPL  180 (361)
T ss_dssp             -CTT-CCEEECCSSCCCCCCH
T ss_pred             cCCc-CCEEECCCCCCCccCH
Confidence            4554 7888888888877664

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.94  E-value=2.8e-26  Score=185.75  Aligned_cols=162  Identities=26%  Similarity=0.456  Sum_probs=151.7

Q ss_pred             CCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcC
Q psy14765         23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG  102 (269)
Q Consensus        23 cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~  102 (269)
                      ||..|.|.    .+.++|++++++++|..++++++.|++++|.++.+++..|.  ++++|++|++++|+++.+++..|..
T Consensus         1 Cp~~C~C~----~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~   74 (208)
T 2o6s_A            1 CPSRCSCS----GTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFD--ELTSLTQLYLGGNKLQSLPNGVFNK   74 (208)
T ss_dssp             CCTTCEEE----TTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred             CcCCCEEC----CCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhc--ccccCcEEECCCCccCccChhhcCC
Confidence            99999998    68999999999999999999999999999999999999988  8999999999999999999988999


Q ss_pred             CCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCee
Q psy14765        103 VTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNL  180 (269)
Q Consensus       103 l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l  180 (269)
                      +++|++|++++|.++.++...+  +++|+.|++++|+++++++..|+.+++|+.|++++|.++++++..+..++. ++.+
T Consensus        75 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L  153 (208)
T 2o6s_A           75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS-LQYI  153 (208)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT-CCEE
T ss_pred             CCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCC-ccEE
Confidence            9999999999999999998876  999999999999999999888999999999999999999999988888876 7999


Q ss_pred             EEeeccccCCC
Q psy14765        181 TLDCRVQSATP  191 (269)
Q Consensus       181 ~l~~n~~~~~~  191 (269)
                      .++.|.+.+..
T Consensus       154 ~l~~N~~~~~~  164 (208)
T 2o6s_A          154 WLHDNPWDCTC  164 (208)
T ss_dssp             ECCSCCBCCCT
T ss_pred             EecCCCeecCC
Confidence            99999765543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.94  E-value=1.9e-26  Score=192.15  Aligned_cols=187  Identities=23%  Similarity=0.432  Sum_probs=166.3

Q ss_pred             CCCCC--CeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhh
Q psy14765         22 SCPLG--CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA   99 (269)
Q Consensus        22 ~cp~~--C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~   99 (269)
                      +||..  |.|.  .+.++++|++++++.+|..++++++.|++++|.++.+++..|.  ++++|++|++++|+|+++++..
T Consensus         3 ~Cp~~~gC~C~--~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~   78 (251)
T 3m19_A            3 TCETVTGCTCN--EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFR--GLTKLTWLNLDYNQLQTLSAGV   78 (251)
T ss_dssp             -CHHHHSSEEE--GGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECTTSCCCCCCTTT
T ss_pred             cCCCCCceEcC--CCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhc--CcccCCEEECCCCcCCccCHhH
Confidence            69977  9996  3457899999999999999999999999999999999999888  8999999999999999999999


Q ss_pred             hcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCC
Q psy14765        100 FRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPG  177 (269)
Q Consensus       100 ~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l  177 (269)
                      |..+++|++|++++|.++.++...|  +++|+.|++++|+++++++..|..+++|+.|+|++|+++++++..|..++. +
T Consensus        79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L  157 (251)
T 3m19_A           79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN-L  157 (251)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-C
T ss_pred             hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC-C
Confidence            9999999999999999999998877  999999999999999999888999999999999999999999988888876 8


Q ss_pred             CeeEEeeccccCCCccccceecccccccccccCccccc
Q psy14765        178 SNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINI  215 (269)
Q Consensus       178 ~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~  215 (269)
                      +.++++.|.+...++...  .....++.+++.+|.+.-
T Consensus       158 ~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          158 QTLSLSTNQLQSVPHGAF--DRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CEEECCSSCCSCCCTTTT--TTCTTCCEEECCSCCBCT
T ss_pred             CEEECCCCcCCccCHHHH--hCCCCCCEEEeeCCceeC
Confidence            999999999888776432  223347888888888753

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=4.2e-26  Score=193.37  Aligned_cols=187  Identities=23%  Similarity=0.390  Sum_probs=153.9

Q ss_pred             CCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhc
Q psy14765         22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR  101 (269)
Q Consensus        22 ~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~  101 (269)
                      +||..|.|... ...+++|++++++.+|.+++++++.|++++|.++.+++..|.  .+++|++|++++|.++++.+.+|.
T Consensus         1 ~CP~~C~C~~~-~~~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~   77 (285)
T 1ozn_A            1 PCPGACVCYNE-PKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFR--ACRNLTILWLHSNVLARIDAAAFT   77 (285)
T ss_dssp             CCCTTCEEECS-SSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTT
T ss_pred             CcCCCceECCC-CCeEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcc--cCCCCCEEECCCCccceeCHhhcC
Confidence            59999999742 247899999999999999999999999999999999998888  889999999999999999888899


Q ss_pred             CCCCCCEEEcCCCC-CCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCC
Q psy14765        102 GVTNMDELDLSDNL-LSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGS  178 (269)
Q Consensus       102 ~l~~L~~L~L~~N~-l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~  178 (269)
                      ++++|++|++++|. ++.+++..+  +++|+.|++++|.++++.+..|.++++|++|++++|.++++++..|..++. ++
T Consensus        78 ~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~  156 (285)
T 1ozn_A           78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN-LT  156 (285)
T ss_dssp             TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CC
T ss_pred             CccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC-cc
Confidence            99999999999997 888866655  888999999999988888888888888888888888888888777777765 68


Q ss_pred             eeEEeeccccCCCccccceecccccccccccCcccc
Q psy14765        179 NLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKIN  214 (269)
Q Consensus       179 ~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~  214 (269)
                      .+.+++|.+...++..  +.....++.+++.+|.+.
T Consensus       157 ~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          157 HLFLHGNRISSVPERA--FRGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             EEECCSSCCCEECTTT--TTTCTTCCEEECCSSCCC
T ss_pred             EEECCCCcccccCHHH--hcCccccCEEECCCCccc
Confidence            8888888776655432  112233666666666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=7.7e-26  Score=203.88  Aligned_cols=205  Identities=24%  Similarity=0.388  Sum_probs=170.9

Q ss_pred             CCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhh
Q psy14765         21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF  100 (269)
Q Consensus        21 ~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~  100 (269)
                      ..||..|.|..  ....|+|++++++.+|.+++++++.|++++|+|+.+++..|.  ++++|+.|++++|+|+.+++.+|
T Consensus        44 ~~Cp~~C~C~~--~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~  119 (452)
T 3zyi_A           44 QNCPSVCSCSN--QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFR--HLHHLEVLQLGRNSIRQIEVGAF  119 (452)
T ss_dssp             CCCCTTSEECS--SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTT
T ss_pred             CCCCCCCEECC--CCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcC--CCCCCCEEECCCCccCCcChhhc
Confidence            58999999973  347899999999999999999999999999999999999998  89999999999999999999999


Q ss_pred             cCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccC-CcceeeCcccccccccCC
Q psy14765        101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSN-CQIHTIYSEAFYVMVLPG  177 (269)
Q Consensus       101 ~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~~l  177 (269)
                      .++++|++|+|++|.++.++...|  +++|+.|+|++|+++.+++..|.++++|+.|++++ |.+..+++..|..+.. +
T Consensus       120 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~-L  198 (452)
T 3zyi_A          120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN-L  198 (452)
T ss_dssp             TTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT-C
T ss_pred             cCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC-C
Confidence            999999999999999999998877  99999999999999999998899999999999998 7888898888888876 7


Q ss_pred             CeeEEeeccccCCCccccceecccccccccccCcccccc-ccceeecCCCeeeeeecc
Q psy14765        178 SNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIK-EETVLSKDNSYLSVFSGG  234 (269)
Q Consensus       178 ~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~-~~~~~~~~~~~~~~~~~~  234 (269)
                      +.+.++.|.+...+.    +.....++.+++++|.+... +..+....+...+.+..+
T Consensus       199 ~~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  252 (452)
T 3zyi_A          199 KYLNLGMCNIKDMPN----LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS  252 (452)
T ss_dssp             CEEECTTSCCSSCCC----CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred             CEEECCCCccccccc----ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence            888888888776642    22333466677777766432 333333343343444333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=2.4e-25  Score=201.67  Aligned_cols=187  Identities=25%  Similarity=0.425  Sum_probs=167.3

Q ss_pred             CCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhc
Q psy14765         22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR  101 (269)
Q Consensus        22 ~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~  101 (269)
                      +||..|.|.  .....|+|++++++.+|..++++++.|++++|+++.+++..|.  ++++|++|++++|.|+.+.+.+|.
T Consensus         2 ~Cp~~C~C~--~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~   77 (477)
T 2id5_A            2 GCPPRCECS--AQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFA--SFPHLEELELNENIVSAVEPGAFN   77 (477)
T ss_dssp             CCSTTCEEE--TTTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTT
T ss_pred             cccCCCeEC--CCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHcc--CCCCCCEEECCCCccCEeChhhhh
Confidence            699999997  3347999999999999999999999999999999999999998  899999999999999999999999


Q ss_pred             CCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCe
Q psy14765        102 GVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSN  179 (269)
Q Consensus       102 ~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~  179 (269)
                      ++++|++|+|++|.++.++...|  +++|+.|++++|++.++.+..|..+++|+.|++++|.++.+.+..|..+.. ++.
T Consensus        78 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~  156 (477)
T 2id5_A           78 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS-LEQ  156 (477)
T ss_dssp             TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTT-CCE
T ss_pred             CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCC-CCE
Confidence            99999999999999999998877  999999999999999999999999999999999999999999999988876 899


Q ss_pred             eEEeeccccCCCccccceecccccccccccCccccc
Q psy14765        180 LTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINI  215 (269)
Q Consensus       180 l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~  215 (269)
                      +.++.|.+...++..  +.....++.+++.+|.+..
T Consensus       157 L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          157 LTLEKCNLTSIPTEA--LSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             EEEESCCCSSCCHHH--HTTCTTCCEEEEESCCCCE
T ss_pred             EECCCCcCcccChhH--hcccCCCcEEeCCCCcCcE
Confidence            999999888776532  2223347777777776643

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=3.2e-25  Score=186.69  Aligned_cols=206  Identities=21%  Similarity=0.345  Sum_probs=173.9

Q ss_pred             CCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCC
Q psy14765         24 PLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV  103 (269)
Q Consensus        24 p~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l  103 (269)
                      +..|.|.  ...+.|+|++++++.+|..++++++.|++++|+++.+++..|.  ++++|++|++++|+|+.+++..|.++
T Consensus         9 ~~~C~c~--~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~i~~~~~~~l   84 (270)
T 2o6q_A            9 GGVCSCN--NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFH--RLTKLRLLYLNDNKLQTLPAGIFKEL   84 (270)
T ss_dssp             TCSBEEE--TTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSS--SCTTCCEEECCSSCCSCCCTTTTSSC
T ss_pred             CCCCEeC--CCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhc--CCCCCCEEECCCCccCeeChhhhcCC
Confidence            3568887  4467999999999999999999999999999999999998898  89999999999999999999999999


Q ss_pred             CCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeE
Q psy14765        104 TNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLT  181 (269)
Q Consensus       104 ~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~  181 (269)
                      ++|++|++++|.++.++...|  +++|+.|++++|+++++++..|+.+++|+.|++++|.++++++..|..++. ++.+.
T Consensus        85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~  163 (270)
T 2o6q_A           85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS-LKELR  163 (270)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEE
T ss_pred             CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcc-cceeE
Confidence            999999999999999998877  999999999999999999988999999999999999999999988888876 89999


Q ss_pred             EeeccccCCCccccceecccccccccccCccccccccc-eeecCCCeeeeeeccce
Q psy14765        182 LDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEET-VLSKDNSYLSVFSGGVD  236 (269)
Q Consensus       182 l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~-~~~~~~~~~~~~~~~n~  236 (269)
                      ++.|.+...++...  .....++.+++.+|.+...+.. +........+.+..+.+
T Consensus       164 L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          164 LYNNQLKRVPEGAF--DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CCSSCCSCCCTTTT--TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ecCCcCcEeChhHh--ccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            99998888776432  2233488888888888654443 33334444444444433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.93  E-value=5.7e-25  Score=176.33  Aligned_cols=137  Identities=20%  Similarity=0.420  Sum_probs=125.7

Q ss_pred             CCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhh
Q psy14765         21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF  100 (269)
Q Consensus        21 ~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~  100 (269)
                      .+||..|.|.    ...++|++++++++|.+++++++.|++++|.|+.++ ..|.  ++++|+.|++++|+|+.+++.+|
T Consensus         2 ~~CP~~C~C~----~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip-~~~~--~l~~L~~L~Ls~N~i~~i~~~~f   74 (193)
T 2wfh_A            2 SRCPTECTCL----DTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVP-KELS--NYKHLTLIDLSNNRISTLSNQSF   74 (193)
T ss_dssp             --CCTTCEEE----TTEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCC-GGGG--GCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CCCCCCCEeC----CCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhH-HHhh--cccCCCEEECCCCcCCEeCHhHc
Confidence            5799999998    689999999999999999999999999999999998 5666  89999999999999999999999


Q ss_pred             cCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCccee
Q psy14765        101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHT  164 (269)
Q Consensus       101 ~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~  164 (269)
                      .++++|++|+|++|+|+.+++..|  +++|+.|+|++|.|+.+++..|..+++|+.|+|++|.+..
T Consensus        75 ~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            999999999999999999988777  8999999999999999988889999999999999888764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=1.2e-24  Score=185.28  Aligned_cols=204  Identities=17%  Similarity=0.244  Sum_probs=167.5

Q ss_pred             CCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCC
Q psy14765         25 LGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT  104 (269)
Q Consensus        25 ~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~  104 (269)
                      +.|.|..-...++++|++++++.+|..++++++.|++++|.++.+++..|.  ++++|+.|++++|.|+.+++.  ..++
T Consensus         2 p~C~~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~--~~l~   77 (290)
T 1p9a_G            2 PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQVD--GTLP   77 (290)
T ss_dssp             CSSEEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEECC--SCCT
T ss_pred             CcccccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhh--cCCCCCEEECCCCccCcccCC--CCCC
Confidence            357777656678999999999999999999999999999999999998888  899999999999999998763  6888


Q ss_pred             CCCEEEcCCCCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEe
Q psy14765        105 NMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLD  183 (269)
Q Consensus       105 ~L~~L~L~~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~  183 (269)
                      +|+.|++++|+++.+|.... +++|+.|++++|+++++++..|.++++|+.|+|++|+++++++..|..++. ++.+.++
T Consensus        78 ~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~  156 (290)
T 1p9a_G           78 VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK-LEKLSLA  156 (290)
T ss_dssp             TCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT-CCEEECT
T ss_pred             cCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC-CCEEECC
Confidence            99999999999998887666 889999999999999998888999999999999999999998888887776 7889999


Q ss_pred             eccccCCCccccceecccccccccccCccccccccceeecCCCeeeeeeccc
Q psy14765        184 CRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVFSGGV  235 (269)
Q Consensus       184 ~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~n  235 (269)
                      .|.+...+..+..  ....++.+++.+|++...+..+........+.+.++.
T Consensus       157 ~N~l~~l~~~~~~--~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          157 NNNLTELPAGLLN--GLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             TSCCSCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             CCcCCccCHHHhc--CcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence            9888887765432  2233777888888887666655554444444444433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.93  E-value=3.5e-25  Score=206.26  Aligned_cols=167  Identities=19%  Similarity=0.374  Sum_probs=150.0

Q ss_pred             CCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhc
Q psy14765         22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR  101 (269)
Q Consensus        22 ~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~  101 (269)
                      .|+..|.|.  ....+++|++.++++||.++++++++|+|++|+|+.+++..|.  ++++|++|+|++|+|+.+++++|.
T Consensus        22 ~~~~~c~~~--~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~--~l~~L~~L~Ls~N~i~~i~~~~f~   97 (635)
T 4g8a_A           22 ESWEPCVEV--VPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQ   97 (635)
T ss_dssp             ---CCSEEE--ETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTT
T ss_pred             CCCCCcccc--CCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHh--CCCCCCEEECCCCcCCCcChhHhc
Confidence            445667776  4467999999999999999999999999999999999999998  999999999999999999999999


Q ss_pred             CCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeC-cccccccccCCC
Q psy14765        102 GVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY-SEAFYVMVLPGS  178 (269)
Q Consensus       102 ~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~~l~  178 (269)
                      ++++|++|+|++|+|+.+|..+|  +++|++|++++|+++++++..|+++++|++|++++|.++.++ +..+..+.. ++
T Consensus        98 ~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~-L~  176 (635)
T 4g8a_A           98 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN-LE  176 (635)
T ss_dssp             TCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT-CC
T ss_pred             CCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchh-hh
Confidence            99999999999999999999888  999999999999999999989999999999999999999875 456666665 79


Q ss_pred             eeEEeeccccCCCcc
Q psy14765        179 NLTLDCRVQSATPCR  193 (269)
Q Consensus       179 ~l~l~~n~~~~~~~~  193 (269)
                      .+.++.|.+...++.
T Consensus       177 ~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          177 HLDLSSNKIQSIYCT  191 (635)
T ss_dssp             EEECCSSCCCEECGG
T ss_pred             hhcccCccccccccc
Confidence            999999988776544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=2.5e-25  Score=194.26  Aligned_cols=206  Identities=19%  Similarity=0.275  Sum_probs=160.3

Q ss_pred             HHHHHHHHHHHhcccCCCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccE
Q psy14765          5 FILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQK   84 (269)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~   84 (269)
                      |..+++.+.+.....+..||..|.|.+   ...++|++++++++|..++++++.|++++|.++.+++..|.  ++++|++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~C~~---~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~--~l~~L~~   80 (353)
T 2z80_A            6 WMVWVLGVIISLSKEESSNQASLSCDR---NGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQ--RCVNLQA   80 (353)
T ss_dssp             ---------------------CCEECT---TSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTT--TCTTCCE
T ss_pred             HHHhhhhheeeccCccCCCccCCCCCC---CeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhc--cCCCCCE
Confidence            333444444444455668999999974   45699999999999999999999999999999999998888  8999999


Q ss_pred             EEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCc-cccCCCCCCCEEEccCC-
Q psy14765         85 LYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISS-YSFQSTPGIRYIDMSNC-  160 (269)
Q Consensus        85 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N-  160 (269)
                      |++++|+|+++.+.+|.++++|++|++++|.++.++...+  +++|++|++++|+++.++. ..++.+++|+.|++++| 
T Consensus        81 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~  160 (353)
T 2z80_A           81 LVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD  160 (353)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             EECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc
Confidence            9999999999999999999999999999999999998765  9999999999999999977 67999999999999999 


Q ss_pred             cceeeCcccccccccCCCeeEEeeccccCCCccccceecccccccccccCcccccccc
Q psy14765        161 QIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEE  218 (269)
Q Consensus       161 ~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~  218 (269)
                      .++.+++..|..++. ++.+.++.|.+....+..  +.....++.+++.+|.+...+.
T Consensus       161 ~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~  215 (353)
T 2z80_A          161 TFTKIQRKDFAGLTF-LEELEIDASDLQSYEPKS--LKSIQNVSHLILHMKQHILLLE  215 (353)
T ss_dssp             SCCEECTTTTTTCCE-EEEEEEEETTCCEECTTT--TTTCSEEEEEEEECSCSTTHHH
T ss_pred             cccccCHHHccCCCC-CCEEECCCCCcCccCHHH--HhccccCCeecCCCCccccchh
Confidence            699998888888876 789999999877654332  2223347777777777754443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.92  E-value=3.2e-25  Score=183.34  Aligned_cols=205  Identities=16%  Similarity=0.264  Sum_probs=170.0

Q ss_pred             CCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEccccc-ccccchhh
Q psy14765         21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEFVDDRA   99 (269)
Q Consensus        21 ~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~-i~~~~~~~   99 (269)
                      +.||..|.|... ....|+|.+  ++++|. ++++++.|++++|+++.+++..|.  ++++|++|++++|+ ++.+++.+
T Consensus         2 ~~cp~~C~C~~~-~~~~v~c~~--l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~--~l~~L~~L~l~~n~~l~~i~~~~   75 (239)
T 2xwt_C            2 GCSSPPCECHQE-EDFRVTCKD--IQRIPS-LPPSTQTLKLIETHLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESHS   75 (239)
T ss_dssp             -CCSSSCSEEEC-STTEEEECS--CSSCCC-CCTTCCEEEEESCCCSEECTTTTT--TCTTCCEEEEECCSSCCEECTTT
T ss_pred             CCCCCCCeeCCC-CcceeEccC--ccccCC-CCCcccEEEEeCCcceEECHHHcc--CCCCCcEEeCCCCCCcceeCHhH
Confidence            469999999841 356788988  999999 889999999999999999999998  89999999999997 99999999


Q ss_pred             hcCCCCCCEEEcCC-CCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCC---EEEccCC-cceeeCcccccc
Q psy14765        100 FRGVTNMDELDLSD-NLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIR---YIDMSNC-QIHTIYSEAFYV  172 (269)
Q Consensus       100 ~~~l~~L~~L~L~~-N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~~~~~~~  172 (269)
                      |.++++|++|++++ |.++.++...|  +++|+.|++++|++++++.  |..+++|+   .|++++| .++++++..|..
T Consensus        76 f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~  153 (239)
T 2xwt_C           76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQG  153 (239)
T ss_dssp             EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTT
T ss_pred             cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccc
Confidence            99999999999999 99999998887  9999999999999999864  88888888   9999999 999999999988


Q ss_pred             cccCCC-eeEEeeccccCCCccccceecccccccccccCcc-ccccccc-eeec-CCCeeeeeecccee
Q psy14765        173 MVLPGS-NLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNK-INIKEET-VLSK-DNSYLSVFSGGVDL  237 (269)
Q Consensus       173 l~~~l~-~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~-~~~~~~~-~~~~-~~~~~~~~~~~n~~  237 (269)
                      +.. ++ .+.++.|.+...+......   ..++.+++.+|+ +...+.. +... .....+.+..+.+.
T Consensus       154 l~~-L~~~L~l~~n~l~~i~~~~~~~---~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          154 LCN-ETLTLKLYNNGFTSVQGYAFNG---TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             TBS-SEEEEECCSCCCCEECTTTTTT---CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             hhc-ceeEEEcCCCCCcccCHhhcCC---CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence            876 67 8999999888776544322   348888888884 7544333 3333 44555555555443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.92  E-value=1.5e-24  Score=178.35  Aligned_cols=169  Identities=25%  Similarity=0.437  Sum_probs=153.4

Q ss_pred             CCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhh
Q psy14765         21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF  100 (269)
Q Consensus        21 ~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~  100 (269)
                      ......|.|.    ...|+|++++++.+|.+++++++.|++++|.|+.+++..|.  ++++|+.|++++|+|+.+++..|
T Consensus        11 ~~~~~~~~Cs----~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~N~l~~i~~~~~   84 (229)
T 3e6j_A           11 AACPSQCSCS----GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFD--SLINLKELYLGSNQLGALPVGVF   84 (229)
T ss_dssp             CCCCTTCEEE----TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTT
T ss_pred             ccCCCCCEEe----CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhh--CccCCcEEECCCCCCCCcChhhc
Confidence            3567889998    68899999999999999999999999999999999999998  89999999999999999999999


Q ss_pred             cCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCC
Q psy14765        101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGS  178 (269)
Q Consensus       101 ~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~  178 (269)
                      .++++|+.|+|++|+|+.++...|  +++|+.|++++|+++.++ ..+..+++|+.|+|++|+|+.+++..|..++. ++
T Consensus        85 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~  162 (229)
T 3e6j_A           85 DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSS-LT  162 (229)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCC-TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTT-CC
T ss_pred             ccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccC-cccccCCCCCEEECCCCcCCccCHHHHhCCCC-CC
Confidence            999999999999999999998887  999999999999999885 45789999999999999999999988888876 79


Q ss_pred             eeEEeeccccCCCccccce
Q psy14765        179 NLTLDCRVQSATPCRIMWS  197 (269)
Q Consensus       179 ~l~l~~n~~~~~~~~~~~~  197 (269)
                      .+.+.+|++.+....+.|+
T Consensus       163 ~L~l~~N~~~c~c~~~~~l  181 (229)
T 3e6j_A          163 HAYLFGNPWDCECRDIMYL  181 (229)
T ss_dssp             EEECTTSCBCTTBGGGHHH
T ss_pred             EEEeeCCCccCCcchhHHH
Confidence            9999999976544345554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.92  E-value=1.4e-24  Score=173.90  Aligned_cols=138  Identities=26%  Similarity=0.527  Sum_probs=129.7

Q ss_pred             CCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccc-cccccCCCcccEEEcccccccccchhhh
Q psy14765         22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKE-IFLQMGITNIQKLYLRKCKLEFVDDRAF  100 (269)
Q Consensus        22 ~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~-~f~~~~l~~L~~L~L~~N~i~~~~~~~~  100 (269)
                      +||..|.|.    .++++|++++++++|..++.+++.|++++|.|+.+++. .|.  .+++|++|++++|+|+++.+.+|
T Consensus         1 ~CP~~C~C~----~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~   74 (192)
T 1w8a_A            1 DCPAMCHCE----GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFG--RLPHLVKLELKRNQLTGIEPNAF   74 (192)
T ss_dssp             CCCTTSEEE----TTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGG--GCTTCCEEECCSSCCCCBCTTTT
T ss_pred             CcCCCCEEC----CCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccc--cCCCCCEEECCCCCCCCcCHhHc
Confidence            599999998    58999999999999999999999999999999998875 577  89999999999999999999999


Q ss_pred             cCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceee
Q psy14765        101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI  165 (269)
Q Consensus       101 ~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~  165 (269)
                      .++++|++|+|++|+|+.++...|  +++|+.|+|++|+++++.+..|..+++|+.|+|++|.++..
T Consensus        75 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             TTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            999999999999999999988877  99999999999999999999999999999999999998754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.92  E-value=1.7e-24  Score=185.25  Aligned_cols=159  Identities=26%  Similarity=0.429  Sum_probs=127.5

Q ss_pred             CCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccc--hhhh
Q psy14765         23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD--DRAF  100 (269)
Q Consensus        23 cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~--~~~~  100 (269)
                      ||..|.|.    .+.|+|++++++++|..++++++.|++++|.++.+++..|.  ++++|++|++++|+++.+.  +..+
T Consensus         1 CP~~C~C~----~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~   74 (306)
T 2z66_A            1 CPSRCSCS----GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFD--KLTQLTKLSLSSNGLSFKGCCSQSD   74 (306)
T ss_dssp             CCTTCEEE----TTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCEEEEEEHHH
T ss_pred             CcCCCeeC----CCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhh--ccccCCEEECCCCccCcccCccccc
Confidence            99999998    57999999999999999999999999999999999999888  8999999999999998663  4556


Q ss_pred             cCCCCCCEEEcCCCCCCCcCCccC-ccccceeecCCCcccccCc-cccCCCCCCCEEEccCCcceeeCcccccccccCCC
Q psy14765        101 RGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPINQISS-YSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGS  178 (269)
Q Consensus       101 ~~l~~L~~L~L~~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~  178 (269)
                      ..+++|++|++++|.++.++.... +++|+.|++++|.++++++ ..+..+++|+.|++++|.++.+.+..+..++. ++
T Consensus        75 ~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~  153 (306)
T 2z66_A           75 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LE  153 (306)
T ss_dssp             HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTT-CC
T ss_pred             ccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcC-CC
Confidence            677888888888888877776554 7777777777777777755 45667777777777777777766666665554 56


Q ss_pred             eeEEeecccc
Q psy14765        179 NLTLDCRVQS  188 (269)
Q Consensus       179 ~l~l~~n~~~  188 (269)
                      .+.++.|.+.
T Consensus       154 ~L~l~~n~l~  163 (306)
T 2z66_A          154 VLKMAGNSFQ  163 (306)
T ss_dssp             EEECTTCEEG
T ss_pred             EEECCCCccc
Confidence            6666666554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.91  E-value=8.5e-24  Score=166.87  Aligned_cols=139  Identities=24%  Similarity=0.468  Sum_probs=130.4

Q ss_pred             CCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcC
Q psy14765         23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG  102 (269)
Q Consensus        23 cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~  102 (269)
                      ||..|.|.    .+.++|++++++.+|..++++++.|++++|+++.+++..|.  ++++|++|++++|+|+.+++..|..
T Consensus         1 Cp~~C~C~----~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~   74 (177)
T 2o6r_A            1 CPSRCSCS----GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFD--KLTQLTKLSLSQNQIQSLPDGVFDK   74 (177)
T ss_dssp             CCTTCEEE----TTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred             CcCCCEeC----CCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhc--CcccccEEECCCCcceEeChhHccC
Confidence            99999998    68999999999999999999999999999999999999888  8999999999999999999988999


Q ss_pred             CCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCc
Q psy14765        103 VTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYS  167 (269)
Q Consensus       103 l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  167 (269)
                      +++|+.|++++|.++.++...+  +++|+.|++++|.++++++..|..+++|+.|++++|.+.+..+
T Consensus        75 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           75 LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9999999999999999988876  8999999999999999988888999999999999999886543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.91  E-value=1.9e-23  Score=180.90  Aligned_cols=163  Identities=26%  Similarity=0.481  Sum_probs=143.6

Q ss_pred             CCCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhh
Q psy14765         20 QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA   99 (269)
Q Consensus        20 ~~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~   99 (269)
                      ...||..|.|.    .+.++|++++++.+|..++++++.|++++|.++.+++..|.  ++++|++|++++|+|+.+.+.+
T Consensus        24 ~~~cp~~c~c~----l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~   97 (332)
T 2ft3_A           24 SAMCPFGCHCH----LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFK--GLQHLYALVLVNNKISKIHEKA   97 (332)
T ss_dssp             -CCCCSSCEEE----TTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECGGG
T ss_pred             cCCCCCCCccc----CCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhh--CCCCCcEEECCCCccCccCHhH
Confidence            35899999998    68999999999999999999999999999999999998888  8999999999999999999999


Q ss_pred             hcCCCCCCEEEcCCCCCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCccee--eCcccccccccCC
Q psy14765        100 FRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHT--IYSEAFYVMVLPG  177 (269)
Q Consensus       100 ~~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~~l  177 (269)
                      |.++++|++|++++|.++.+|...+ ++|++|++++|+++.+++..|.++++|+.|++++|.++.  +.+..+..+  .+
T Consensus        98 ~~~l~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L  174 (332)
T 2ft3_A           98 FSPLRKLQKLYISKNHLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KL  174 (332)
T ss_dssp             STTCTTCCEEECCSSCCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CC
T ss_pred             hhCcCCCCEEECCCCcCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--cc
Confidence            9999999999999999999998775 899999999999999988889999999999999999974  556666655  24


Q ss_pred             CeeEEeeccccCCC
Q psy14765        178 SNLTLDCRVQSATP  191 (269)
Q Consensus       178 ~~l~l~~n~~~~~~  191 (269)
                      +.+.++.|.+...+
T Consensus       175 ~~L~l~~n~l~~l~  188 (332)
T 2ft3_A          175 NYLRISEAKLTGIP  188 (332)
T ss_dssp             SCCBCCSSBCSSCC
T ss_pred             CEEECcCCCCCccC
Confidence            56666655555444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.91  E-value=2.9e-24  Score=187.51  Aligned_cols=167  Identities=18%  Similarity=0.318  Sum_probs=128.2

Q ss_pred             CCCCC-CeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccc-cccchhh
Q psy14765         22 SCPLG-CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL-EFVDDRA   99 (269)
Q Consensus        22 ~cp~~-C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i-~~~~~~~   99 (269)
                      .||.. |+|.    .++|+|+++++++||..++++++.|++++|+|+.|++++|.  ++++|++|+|++|++ +.+++++
T Consensus         1 gCp~~~C~C~----~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~Ls~N~i~~~i~~~~   74 (350)
T 4ay9_X            1 GCHHRICHCS----NRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADV   74 (350)
T ss_dssp             -CCCSSSEEE----TTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSST--TCTTCCEEEEECCTTCCEECTTS
T ss_pred             CCCCCccEee----CCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHc--CCCCCCEEECcCCCCCCccChhH
Confidence            49865 9998    68999999999999999999999999999999999999998  999999999999998 4577788


Q ss_pred             hcCCCCCCE-EEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccC-CcceeeCccccccccc
Q psy14765        100 FRGVTNMDE-LDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSN-CQIHTIYSEAFYVMVL  175 (269)
Q Consensus       100 ~~~l~~L~~-L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~  175 (269)
                      |.+++++.+ +.++.|+++.+++..|  +++|++|++++|+++.+++..+.....+..+++.+ |.+..++...|..+..
T Consensus        75 f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~  154 (350)
T 4ay9_X           75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF  154 (350)
T ss_dssp             BCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBS
T ss_pred             hhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcch
Confidence            999988765 6677899999988887  89999999999998877665554444455555533 4555555555544443


Q ss_pred             CCCeeEEeeccccCCCccc
Q psy14765        176 PGSNLTLDCRVQSATPCRI  194 (269)
Q Consensus       176 ~l~~l~l~~n~~~~~~~~~  194 (269)
                      .+..+.+++|.+..++..+
T Consensus       155 ~l~~L~L~~N~i~~i~~~~  173 (350)
T 4ay9_X          155 ESVILWLNKNGIQEIHNSA  173 (350)
T ss_dssp             SCEEEECCSSCCCEECTTS
T ss_pred             hhhhhccccccccCCChhh
Confidence            3444555555554444433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.91  E-value=3.3e-23  Score=179.13  Aligned_cols=164  Identities=24%  Similarity=0.421  Sum_probs=142.4

Q ss_pred             CCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhh
Q psy14765         21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF  100 (269)
Q Consensus        21 ~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~  100 (269)
                      ..||..|.|.    .+.++|++++++.+|..+++.++.|++++|.++.+++..|.  ++++|++|++++|+++.+.+..|
T Consensus        23 ~~cp~~c~c~----l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~   96 (330)
T 1xku_A           23 PVCPFRCQCH----LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFK--NLKNLHTLILINNKISKISPGAF   96 (330)
T ss_dssp             CCCCTTCEEE----TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSCCCCBCTTTT
T ss_pred             CCCCCCCcCC----CeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhc--cCCCCCEEECCCCcCCeeCHHHh
Confidence            5799999998    68999999999999999999999999999999999998888  89999999999999999999999


Q ss_pred             cCCCCCCEEEcCCCCCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCccee--eCcccccccccCCC
Q psy14765        101 RGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHT--IYSEAFYVMVLPGS  178 (269)
Q Consensus       101 ~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~~l~  178 (269)
                      ..+++|++|++++|.++.+|...+ ++|+.|++++|.++++++..|.++++|+.|++++|.++.  +.+..+..++. ++
T Consensus        97 ~~l~~L~~L~Ls~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~-L~  174 (330)
T 1xku_A           97 APLVKLERLYLSKNQLKELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK-LS  174 (330)
T ss_dssp             TTCTTCCEEECCSSCCSBCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT-CC
T ss_pred             cCCCCCCEEECCCCcCCccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC-cC
Confidence            999999999999999999987664 788999999999988888778888888888888888864  55566666654 56


Q ss_pred             eeEEeeccccCCCc
Q psy14765        179 NLTLDCRVQSATPC  192 (269)
Q Consensus       179 ~l~l~~n~~~~~~~  192 (269)
                      .+.++.|.+...+.
T Consensus       175 ~L~l~~n~l~~l~~  188 (330)
T 1xku_A          175 YIRIADTNITTIPQ  188 (330)
T ss_dssp             EEECCSSCCCSCCS
T ss_pred             EEECCCCccccCCc
Confidence            67777666665543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=7.8e-23  Score=172.41  Aligned_cols=163  Identities=20%  Similarity=0.388  Sum_probs=142.2

Q ss_pred             CCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCC
Q psy14765         25 LGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT  104 (269)
Q Consensus        25 ~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~  104 (269)
                      +.|.|..  ....++|++..++++|..++++++.|++++|.++.+++..|.  ++++|++|++++|+++.+++.+|.+++
T Consensus         1 ~~C~~~~--~~~~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~   76 (276)
T 2z62_A            1 EPCVEVV--PNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLS   76 (276)
T ss_dssp             CCSEEEE--TTTEEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTT--TCTTCSEEECTTCCCCEECTTTTTTCT
T ss_pred             CCceecc--CCceEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhc--cccCCcEEECCCCcCCccCHHHccCCc
Confidence            3588863  346899999999999999999999999999999999998887  899999999999999999998999999


Q ss_pred             CCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeC-cccccccccCCCeeE
Q psy14765        105 NMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY-SEAFYVMVLPGSNLT  181 (269)
Q Consensus       105 ~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~~l~~l~  181 (269)
                      +|++|++++|.++.++...+  +++|+.|++++|.+.++.+..++.+++|+.|++++|.++++. +..+..++. ++.+.
T Consensus        77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~-L~~L~  155 (276)
T 2z62_A           77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN-LEHLD  155 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT-CCEEE
T ss_pred             CCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCC-CCEEE
Confidence            99999999999998887666  899999999999999988877888999999999999998865 567777765 78888


Q ss_pred             EeeccccCCCc
Q psy14765        182 LDCRVQSATPC  192 (269)
Q Consensus       182 l~~n~~~~~~~  192 (269)
                      ++.|.+...++
T Consensus       156 Ls~N~l~~~~~  166 (276)
T 2z62_A          156 LSSNKIQSIYC  166 (276)
T ss_dssp             CCSSCCCEECG
T ss_pred             CCCCCCCcCCH
Confidence            88887776554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.89  E-value=9.9e-23  Score=189.60  Aligned_cols=191  Identities=19%  Similarity=0.219  Sum_probs=159.8

Q ss_pred             CCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhh
Q psy14765         21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF  100 (269)
Q Consensus        21 ~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~  100 (269)
                      .+||..|.|..  ...+++|++.+++++|..+++.++.|++++|.|+.+++..|.  ++++|++|++++|+++.+.+.+|
T Consensus         2 ~~~~~~C~~~~--~~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~   77 (606)
T 3t6q_A            2 TSSDQKCIEKE--VNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFS--RLINLTFLDLTRCQIYWIHEDTF   77 (606)
T ss_dssp             ----CCCEEEE--TTTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTST--TCTTCSEEECTTCCCCEECTTTT
T ss_pred             ccccCceeccc--CCceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhc--cCccceEEECCCCccceeChhhc
Confidence            46999999973  467999999999999999999999999999999999999998  99999999999999999999999


Q ss_pred             cCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCC
Q psy14765        101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGS  178 (269)
Q Consensus       101 ~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~  178 (269)
                      .++++|++|++++|.++.+++..+  +++|++|++++|.++++.+..++++++|++|++++|.+++++...+..++. ++
T Consensus        78 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~  156 (606)
T 3t6q_A           78 QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK-LK  156 (606)
T ss_dssp             TTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTT-CC
T ss_pred             cCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcc-cC
Confidence            999999999999999998866666  999999999999999998888999999999999999999987555555554 79


Q ss_pred             eeEEeeccccCCCccccceecccccc--cccccCcccccccc
Q psy14765        179 NLTLDCRVQSATPCRIMWSINRKIYD--HVNWNSNKINIKEE  218 (269)
Q Consensus       179 ~l~l~~n~~~~~~~~~~~~~~~~~l~--~l~~~~n~~~~~~~  218 (269)
                      .+.++.|.+...++...  .....++  .+++.+|.+...+.
T Consensus       157 ~L~L~~n~l~~~~~~~~--~~l~~L~~l~L~l~~n~l~~~~~  196 (606)
T 3t6q_A          157 VLDFQNNAIHYLSKEDM--SSLQQATNLSLNLNGNDIAGIEP  196 (606)
T ss_dssp             EEECCSSCCCEECHHHH--HTTTTCCSEEEECTTCCCCEECT
T ss_pred             EEEcccCcccccChhhh--hhhcccceeEEecCCCccCccCh
Confidence            99999998776654322  1222244  56777777754433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.89  E-value=2.3e-22  Score=180.83  Aligned_cols=166  Identities=19%  Similarity=0.272  Sum_probs=142.1

Q ss_pred             CCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEccccccc-ccchhh
Q psy14765         21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE-FVDDRA   99 (269)
Q Consensus        21 ~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~-~~~~~~   99 (269)
                      .+||..|.|.    ...++|++++++.+|. ++++++.|++++|.++.+++..|.  ++++|++|++++|.+. .+++.+
T Consensus         2 ~p~~~~c~~~----~~~~~c~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~n~~~~~i~~~~   74 (455)
T 3v47_A            2 DPGTSECSVI----GYNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFS--RLQDLQFLKVEQQTPGLVIRNNT   74 (455)
T ss_dssp             -----CCEEE----TTEEECCSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTS--SCTTCCEEECCCCSTTCEECTTT
T ss_pred             CCccceeEEE----ccccCcCCCCcccCCC-CCCccCEEEecCCccCcCChhHhc--cCccccEEECcCCcccceECccc
Confidence            5699999998    6889999999999999 889999999999999999888888  8999999999999997 677888


Q ss_pred             hcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccC--ccccCCCCCCCEEEccCCcceeeCccc-ccccc
Q psy14765        100 FRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQIS--SYSFQSTPGIRYIDMSNCQIHTIYSEA-FYVMV  174 (269)
Q Consensus       100 ~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~  174 (269)
                      |.++++|++|++++|.++.+++..+  +++|++|++++|.+++..  ...|+.+++|++|++++|.++++.+.. +..++
T Consensus        75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  154 (455)
T 3v47_A           75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR  154 (455)
T ss_dssp             TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred             ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence            9999999999999999998866555  999999999999998743  344889999999999999999986655 77777


Q ss_pred             cCCCeeEEeeccccCCCccc
Q psy14765        175 LPGSNLTLDCRVQSATPCRI  194 (269)
Q Consensus       175 ~~l~~l~l~~n~~~~~~~~~  194 (269)
                      . ++.+.+++|.+....+..
T Consensus       155 ~-L~~L~L~~n~l~~~~~~~  173 (455)
T 3v47_A          155 R-FHVLDLTFNKVKSICEED  173 (455)
T ss_dssp             T-CCEEECTTCCBSCCCTTT
T ss_pred             c-ccEEeCCCCcccccChhh
Confidence            6 899999999887765543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=7.3e-22  Score=164.38  Aligned_cols=162  Identities=20%  Similarity=0.312  Sum_probs=149.9

Q ss_pred             CCcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765         34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD  110 (269)
Q Consensus        34 ~~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  110 (269)
                      ..+.++.+++++..+++...   ++|+.|++++|.++.+++..|.  ++++|++|++++|+|+.+++..|..+++|++|+
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  113 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD--DLTELGTLGLANNQLASLPLGVFDHLTQLDKLY  113 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc--cCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence            35789999999999887544   7999999999999999999998  899999999999999999999999999999999


Q ss_pred             cCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeecccc
Q psy14765        111 LSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQS  188 (269)
Q Consensus       111 L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~  188 (269)
                      +++|.++.++...|  +++|+.|++++|+++++++..|+.+++|+.|+|++|+++++++..|..++. ++.+.+++|.+.
T Consensus       114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~N~~~  192 (251)
T 3m19_A          114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK-LQTITLFGNQFD  192 (251)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT-CCEEECCSCCBC
T ss_pred             cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCC-CCEEEeeCCcee
Confidence            99999999998887  999999999999999999988999999999999999999999988988876 899999999998


Q ss_pred             CCCcccccee
Q psy14765        189 ATPCRIMWSI  198 (269)
Q Consensus       189 ~~~~~~~~~~  198 (269)
                      +..+++.|+.
T Consensus       193 c~~~~~~~l~  202 (251)
T 3m19_A          193 CSRCEILYLS  202 (251)
T ss_dssp             TTSTTHHHHH
T ss_pred             CCccccHHHH
Confidence            8778887773

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.88  E-value=2.1e-22  Score=175.67  Aligned_cols=186  Identities=16%  Similarity=0.239  Sum_probs=145.6

Q ss_pred             chhHHHHHHHHHHHh---cccCCCCCCCCeEeee------------CCCcEEEcCCCCCcccCCCCC---CCceEEEeec
Q psy14765          2 CHKFILSVFLLTLLA---SVTQASCPLGCSCKWK------------AGKRTVECIDRNFYTIPEGID---LDTQVLDLSS   63 (269)
Q Consensus         2 ~~~~~~~~~~~~~~~---~~~~~~cp~~C~C~~~------------~~~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~   63 (269)
                      +..|++.++++....   ..+...||..|.|+..            +.-++++++++.++.+|....   ++++.|++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~   85 (353)
T 2z80_A            6 WMVWVLGVIISLSKEESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTS   85 (353)
T ss_dssp             ---------------------CCEECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             HHHhhhhheeeccCccCCCccCCCCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCC
Confidence            344555555543332   2233489999998853            234789999999999988443   7999999999


Q ss_pred             CCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCC-ccC--ccccceeecCCC-ccc
Q psy14765         64 NNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS-LIY--IPYLKSINLAHN-PIN  139 (269)
Q Consensus        64 n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~--l~~L~~L~L~~N-~i~  139 (269)
                      |.++.+++..|.  ++++|++|++++|+|+.+++..|.++++|++|++++|.++.++. ..+  +++|+.|++++| .+.
T Consensus        86 n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~  163 (353)
T 2z80_A           86 NGINTIEEDSFS--SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT  163 (353)
T ss_dssp             SCCCEECTTTTT--TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred             CccCccCHhhcC--CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc
Confidence            999999999888  89999999999999999999889999999999999999999988 555  999999999999 689


Q ss_pred             ccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCC
Q psy14765        140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSAT  190 (269)
Q Consensus       140 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~  190 (269)
                      .+++..|+++++|+.|++++|.++++.+..+..++. ++.+.++.|.+...
T Consensus       164 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~  213 (353)
T 2z80_A          164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN-VSHLILHMKQHILL  213 (353)
T ss_dssp             EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE-EEEEEEECSCSTTH
T ss_pred             ccCHHHccCCCCCCEEECCCCCcCccCHHHHhcccc-CCeecCCCCccccc
Confidence            998888999999999999999999998888877664 56666666665443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.88  E-value=5.8e-22  Score=184.41  Aligned_cols=192  Identities=17%  Similarity=0.323  Sum_probs=159.5

Q ss_pred             CeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCC
Q psy14765         27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM  106 (269)
Q Consensus        27 C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L  106 (269)
                      |.|.  ....+++|++++++.+|..++++++.|++++|.++.+++..|.  ++++|++|++++|+|+++++.+|.++++|
T Consensus         7 c~~~--~~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L   82 (606)
T 3vq2_A            7 CIEV--VPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFS--NFSELQWLDLSRCEIETIEDKAWHGLHHL   82 (606)
T ss_dssp             CEEE--ETTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred             ceec--CCCCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhcc--CCccCcEEeCCCCcccccCHHHhhchhhc
Confidence            6664  2357999999999999999999999999999999999999998  99999999999999999999999999999


Q ss_pred             CEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeC-cccccccccCCCeeEEe
Q psy14765        107 DELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY-SEAFYVMVLPGSNLTLD  183 (269)
Q Consensus       107 ~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~~l~~l~l~  183 (269)
                      ++|++++|.++.+++..+  +++|++|++++|.++++++..++++++|++|++++|.++++. +..|..++. ++.+.++
T Consensus        83 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~-L~~L~Ls  161 (606)
T 3vq2_A           83 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN-LVHVDLS  161 (606)
T ss_dssp             CEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTT-CCEEECC
T ss_pred             CEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCC-CCEEEcc
Confidence            999999999998866666  999999999999999998888999999999999999999754 567787776 8999999


Q ss_pred             eccccCCCccc-cceeccc-ccccccccCccccccccceeec
Q psy14765        184 CRVQSATPCRI-MWSINRK-IYDHVNWNSNKINIKEETVLSK  223 (269)
Q Consensus       184 ~n~~~~~~~~~-~~~~~~~-~l~~l~~~~n~~~~~~~~~~~~  223 (269)
                      .|.+...++.. ..+.... .+..+++.+|.+...+......
T Consensus       162 ~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~  203 (606)
T 3vq2_A          162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG  203 (606)
T ss_dssp             SSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred             CCcceecChhhhhhhhccccccceeeccCCCcceeCcccccC
Confidence            98877665432 2222111 0235677777776554444333

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.88  E-value=5e-22  Score=187.30  Aligned_cols=182  Identities=16%  Similarity=0.245  Sum_probs=160.8

Q ss_pred             CCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCC
Q psy14765         26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN  105 (269)
Q Consensus        26 ~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~  105 (269)
                      .|.|.    ...++|++++++++|..++++++.|++++|.++.+++..|.  ++++|++|++++|.++++.+.+|.++++
T Consensus         1 ~C~~~----~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~   74 (680)
T 1ziw_A            1 KCTVS----HEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFT--RYSQLTSLDVGFNTISKLEPELCQKLPM   74 (680)
T ss_dssp             ---CB----SSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGG--GGTTCSEEECCSSCCCCCCTTHHHHCTT
T ss_pred             CceeE----CCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHh--CCCcCcEEECCCCccCccCHHHHhcccC
Confidence            37787    57899999999999999999999999999999999999998  8999999999999999999999999999


Q ss_pred             CCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEe
Q psy14765        106 MDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLD  183 (269)
Q Consensus       106 L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~  183 (269)
                      |++|++++|.++.+|...|  +++|++|++++|.++++++..|+++++|++|++++|.++++++..+..+.. ++.+.++
T Consensus        75 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~  153 (680)
T 1ziw_A           75 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-LQELLLS  153 (680)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTT-CCEEECC
T ss_pred             cCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhccccc-CCEEEcc
Confidence            9999999999999998766  999999999999999999889999999999999999999998888888776 8999999


Q ss_pred             eccccCCCccccceecccccccccccCcccc
Q psy14765        184 CRVQSATPCRIMWSINRKIYDHVNWNSNKIN  214 (269)
Q Consensus       184 ~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~  214 (269)
                      .|.+...++..........++.+++.+|.+.
T Consensus       154 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          154 NNKIQALKSEELDIFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             SSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred             CCcccccCHHHhhccccccccEEECCCCccc
Confidence            9988776654433333445788888888764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=3.1e-21  Score=162.26  Aligned_cols=175  Identities=18%  Similarity=0.298  Sum_probs=152.4

Q ss_pred             CcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765         35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL  111 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  111 (269)
                      .+.++.+++.++.+|....   ++|+.|++++|.++.+++..|.  ++++|++|++++|+++.+++..|..+++|++|++
T Consensus        39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK--ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTS--SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhc--CCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            5789999999999887543   7899999999999999999988  8999999999999999999988999999999999


Q ss_pred             CCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccC
Q psy14765        112 SDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSA  189 (269)
Q Consensus       112 ~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~  189 (269)
                      ++|.++.++...+  +++|+.|++++|.++++++..|+.+++|+.|++++|.++++++..|..++. ++.+.++.|.+..
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~  195 (270)
T 2o6q_A          117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE-LKTLKLDNNQLKR  195 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT-CCEEECCSSCCSC
T ss_pred             CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCC-cCEEECCCCcCCc
Confidence            9999999988777  999999999999999998888999999999999999999999888888776 7999999998887


Q ss_pred             CCccccceecccccccccccCcccc
Q psy14765        190 TPCRIMWSINRKIYDHVNWNSNKIN  214 (269)
Q Consensus       190 ~~~~~~~~~~~~~l~~l~~~~n~~~  214 (269)
                      .++....  ....++.+++.+|.+.
T Consensus       196 ~~~~~~~--~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          196 VPEGAFD--SLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CCTTTTT--TCTTCCEEECCSSCBC
T ss_pred             CCHHHhc--cccCCCEEEecCCCee
Confidence            7764322  2334777888888764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.87  E-value=1.3e-21  Score=153.49  Aligned_cols=114  Identities=32%  Similarity=0.580  Sum_probs=96.0

Q ss_pred             CCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhc
Q psy14765         22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR  101 (269)
Q Consensus        22 ~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~  101 (269)
                      +||..|.|.    .++|+|++++++++|..++++++.|++++|.|+.+++..|.  ++++|++|+|++|+|+.+++..|.
T Consensus         2 ~CP~~C~C~----~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~f~   75 (170)
T 3g39_A            2 ACPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFD--RLTQLTRLDLDNNQLTVLPAGVFD   75 (170)
T ss_dssp             CCC-CCEEE----TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTT
T ss_pred             cCcCcCCcC----CCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhc--CcccCCEEECCCCCcCccChhhcc
Confidence            699999998    68999999999999999889999999999999988888887  788888888888888888888888


Q ss_pred             CCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCccccc
Q psy14765        102 GVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQI  141 (269)
Q Consensus       102 ~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~  141 (269)
                      ++++|++|+|++|+|+.++...|  +++|+.|+|++|++...
T Consensus        76 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            88888888888888888777655  67777777777766644

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.87  E-value=5.1e-21  Score=162.00  Aligned_cols=200  Identities=14%  Similarity=0.148  Sum_probs=164.0

Q ss_pred             CCcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEccccc-ccccchhhhcCCCCCCEE
Q psy14765         34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEFVDDRAFRGVTNMDEL  109 (269)
Q Consensus        34 ~~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L  109 (269)
                      .-+.++++++.++.+|....   ++++.|++++|.++.+.+..|.  ++++|++|++++|. ++.+.+..|..+++|++|
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT--GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcC--CccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            35789999999999886543   7899999999999999888888  89999999999997 999988899999999999


Q ss_pred             EcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccc
Q psy14765        110 DLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQ  187 (269)
Q Consensus       110 ~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~  187 (269)
                      ++++|.++.+++..+  +++|+.|++++|+++++++..|+.+++|+.|++++|+++++++..|..++. ++.+.++.|.+
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l  189 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS-LDRLLLHQNRV  189 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT-CCEEECCSSCC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccc-cCEEECCCCcc
Confidence            999999998877666  899999999999999998888999999999999999999999888888776 79999999988


Q ss_pred             cCCCccccceecccccccccccCccccccccc-eeecCCCeeeeeeccceee
Q psy14765        188 SATPCRIMWSINRKIYDHVNWNSNKINIKEET-VLSKDNSYLSVFSGGVDLA  238 (269)
Q Consensus       188 ~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~-~~~~~~~~~~~~~~~n~~~  238 (269)
                      ....+...  .....++.+++.+|.+...+.. +........+.+..+.+.|
T Consensus       190 ~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          190 AHVHPHAF--RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CEECTTTT--TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cccCHhHc--cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            76644332  2334488888888888644432 4444555555666655554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.87  E-value=1.7e-21  Score=153.56  Aligned_cols=116  Identities=34%  Similarity=0.592  Sum_probs=96.1

Q ss_pred             CCCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhh
Q psy14765         20 QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA   99 (269)
Q Consensus        20 ~~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~   99 (269)
                      +.+||..|+|.    .+.++|+++++.++|..++++++.|++++|+|+.+++..|.  ++++|++|+|++|+|+.+++..
T Consensus         3 ~~~CP~~C~C~----~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~i~~~~   76 (174)
T 2r9u_A            3 SAGCPSQCSCD----QTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFD--HLVNLQQLYFNSNKLTAIPTGV   76 (174)
T ss_dssp             CCSSCTTSEEC----SSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCCCCCCEEC----CcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhc--CCcCCCEEECCCCCCCccChhH
Confidence            46899999997    68999999999999999888999999999999988888887  7888888888888888888777


Q ss_pred             hcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCccccc
Q psy14765        100 FRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQI  141 (269)
Q Consensus       100 ~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~  141 (269)
                      |.++++|+.|+|++|+|+.++...+  +++|+.|+|++|++...
T Consensus        77 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           77 FDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             hCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            7788888888888888887776655  66677777766666544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.86  E-value=7.5e-21  Score=165.39  Aligned_cols=224  Identities=17%  Similarity=0.212  Sum_probs=155.3

Q ss_pred             CCCCC-eEeeeCCCcEEEcCCC-CCcccCCCCC--CCceEEEeec-CCccccccccccccCCCcccEEEcccccccccch
Q psy14765         23 CPLGC-SCKWKAGKRTVECIDR-NFYTIPEGID--LDTQVLDLSS-NNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD   97 (269)
Q Consensus        23 cp~~C-~C~~~~~~~~v~c~~~-~l~~ip~~~~--~~l~~L~l~~-n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~   97 (269)
                      ||..| .|.    ...|+|+++ +|+.||. ++  .+|+.|+|++ |.|+.+++..|.  ++++|+.|+|++|+|+++++
T Consensus         1 cp~~c~~C~----~~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~   73 (347)
T 2ifg_A            1 CPDACCPHG----SSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLR--GLGELRNLTIVKSGLRFVAP   73 (347)
T ss_dssp             CCSSSCCSS----SSCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSC--SCCCCSEEECCSSCCCEECT
T ss_pred             CCCcCcccc----CCEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhc--cccCCCEEECCCCccceeCH
Confidence            99999 997    578999998 9999999 77  5799999996 999999999998  99999999999999999999


Q ss_pred             hhhcCCCCCCEEEcCCCCCCCcCCccC-ccccceeecCCCcccccCc-cccCCC------------------CCCCEEEc
Q psy14765         98 RAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPINQISS-YSFQST------------------PGIRYIDM  157 (269)
Q Consensus        98 ~~~~~l~~L~~L~L~~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~-~~~~~l------------------~~L~~L~L  157 (269)
                      .+|.++++|+.|+|++|+|+.+|...| ...|+.|+|.+|++..... ..|..+                  ..++.+.+
T Consensus        74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~~l~~l~~  153 (347)
T 2ifg_A           74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPN  153 (347)
T ss_dssp             TGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCCC
T ss_pred             HHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCChHHhcCCc
Confidence            999999999999999999999999888 4459999999999874321 001000                  01222222


Q ss_pred             cCCcceeeCcccccccccCCCeeEEeeccccCCCccccceeccccccccccc---CccccccccceeecCCCe-eeeeec
Q psy14765        158 SNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWN---SNKINIKEETVLSKDNSY-LSVFSG  233 (269)
Q Consensus       158 ~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~---~n~~~~~~~~~~~~~~~~-~~~~~~  233 (269)
                      ..+....+....-......++.+.+.|...+.+.+.+.|..+......-.-.   .....+....+. ..... .+.|.+
T Consensus       154 ~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~D~G~~Y~C~a  232 (347)
T 2ifg_A          154 ASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVT-SDLNRKNVTCWA  232 (347)
T ss_dssp             TTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCC-STTTTCCEEECC
T ss_pred             ccCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceecccceEEEeeCC-hHHCCCeEEEEE
Confidence            2221111111111112244688999999988899999999875432211100   000011111222 23334 677877


Q ss_pred             cceeeeecCCCcceeeecCce
Q psy14765        234 GVDLAAASSPGGENIYDQKST  254 (269)
Q Consensus       234 ~n~~~~~~~~~~~~~~~~~~~  254 (269)
                      .|..|.....+.+.+..+|.+
T Consensus       233 ~n~~g~~~~~~~l~V~~~P~i  253 (347)
T 2ifg_A          233 ENDVGRAEVSVQVNVSFPASV  253 (347)
T ss_dssp             EETTEECCEEECCCCBEEEEE
T ss_pred             EcCCCCEEEEEEEEEcCCCee
Confidence            777666666666666666664

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.86  E-value=6.6e-21  Score=160.58  Aligned_cols=198  Identities=16%  Similarity=0.201  Sum_probs=164.1

Q ss_pred             CcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765         35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL  111 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  111 (269)
                      -++++.+++.++.++....   ++++.|++++|.++.+++..|.  ++++|++|++++|+++.+++..|.++++|++|++
T Consensus        30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHcc--CCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            6899999999999887443   7999999999999999999898  8999999999999999999999999999999999


Q ss_pred             CCCCCCCcCCccC--ccccceeecCCCcccccC-ccccCCCCCCCEEEccCCcceeeCcccccccccCCC----eeEEee
Q psy14765        112 SDNLLSTVPSLIY--IPYLKSINLAHNPINQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGS----NLTLDC  184 (269)
Q Consensus       112 ~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~----~l~l~~  184 (269)
                      ++|.++.++...+  +++|+.|++++|.++++. +..++.+++|+.|++++|+++++++..+..+.. +.    .+.++.
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~l~l~L~ls~  186 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ-MPLLNLSLDLSL  186 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT-CTTCCEEEECCS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh-ccccceeeecCC
Confidence            9999999887656  999999999999999865 777999999999999999999999888877664 34    688888


Q ss_pred             ccccCCCccccceecccccccccccCccccccccce-eecCCCeeeeeeccceee
Q psy14765        185 RVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETV-LSKDNSYLSVFSGGVDLA  238 (269)
Q Consensus       185 n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~-~~~~~~~~~~~~~~n~~~  238 (269)
                      |.+...++......   .++.+++++|.+...+... ........+.+..+.+.|
T Consensus       187 n~l~~~~~~~~~~~---~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          187 NPMNFIQPGAFKEI---RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             SCCCEECTTSSCSC---CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             CcccccCccccCCC---cccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            88887766554333   3888888888886555443 334455555555555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.86  E-value=5.9e-21  Score=176.12  Aligned_cols=185  Identities=18%  Similarity=0.362  Sum_probs=157.5

Q ss_pred             CCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCC
Q psy14765         26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN  105 (269)
Q Consensus        26 ~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~  105 (269)
                      .|.|.  .....++|++.+++++|..++++++.|++++|.++.+++..|.  ++++|++|++++|+++++++.+|.++++
T Consensus         2 ~c~~~--~~~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~~~~~~l~~   77 (570)
T 2z63_A            2 PCVEV--VPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLSH   77 (570)
T ss_dssp             CSEEE--ETTTEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTT--TCSSCCEEECTTCCCCEECTTTTTTCTT
T ss_pred             Ccccc--CCCcEEEeCCCCccccCCCccccccEEEccCCccCccChhHhh--CCCCceEEECCCCcCCccCcccccCchh
Confidence            58777  3357899999999999999999999999999999999999998  8999999999999999999999999999


Q ss_pred             CCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeC-cccccccccCCCeeEE
Q psy14765        106 MDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY-SEAFYVMVLPGSNLTL  182 (269)
Q Consensus       106 L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~~l~~l~l  182 (269)
                      |++|++++|.++.+++..|  +++|++|++++|.++++++..++++++|++|++++|.++++. +..|..++. ++.+++
T Consensus        78 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~-L~~L~l  156 (570)
T 2z63_A           78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN-LEHLDL  156 (570)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT-CCEEEC
T ss_pred             CCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCC-CCEEeC
Confidence            9999999999999987777  999999999999999998878999999999999999999864 567777776 899999


Q ss_pred             eeccccCCCccccceeccccc----ccccccCccccccc
Q psy14765        183 DCRVQSATPCRIMWSINRKIY----DHVNWNSNKINIKE  217 (269)
Q Consensus       183 ~~n~~~~~~~~~~~~~~~~~l----~~l~~~~n~~~~~~  217 (269)
                      +.|.+...++......  ..+    ..+++.+|.+...+
T Consensus       157 ~~n~l~~~~~~~~~~l--~~L~~~~~~L~l~~n~l~~~~  193 (570)
T 2z63_A          157 SSNKIQSIYCTDLRVL--HQMPLLNLSLDLSLNPMNFIQ  193 (570)
T ss_dssp             TTSCCCEECGGGGHHH--HTCTTCCCEEECTTCCCCEEC
T ss_pred             cCCccceecHHHccch--hccchhhhhcccCCCCceecC
Confidence            9988776654322221  113    45667777665443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.85  E-value=8.7e-21  Score=175.26  Aligned_cols=159  Identities=18%  Similarity=0.247  Sum_probs=133.4

Q ss_pred             CCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhh
Q psy14765         21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF  100 (269)
Q Consensus        21 ~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~  100 (269)
                      ..|+..|.|..   .+.++|++++++.+|..++++++.|++++|.++.+++..|.  ++++|++|++++|+|+++.+++|
T Consensus        22 ~~~~~~~~~~~---~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~   96 (562)
T 3a79_B           22 VGSMTPFSNEL---ESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDIS--FLSELRVLRLSHNRIRSLDFHVF   96 (562)
T ss_dssp             --------------CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTT--TCTTCCEEECCSCCCCEECTTTT
T ss_pred             hccccccccCC---CcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhc--cCCCccEEECCCCCCCcCCHHHh
Confidence            34666677763   47999999999999999999999999999999999999998  99999999999999999999999


Q ss_pred             cCCCCCCEEEcCCCCCCCcCCccCccccceeecCCCcccccC-ccccCCCCCCCEEEccCCcceeeCcccccccccCCCe
Q psy14765        101 RGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSN  179 (269)
Q Consensus       101 ~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~  179 (269)
                      .++++|++|++++|.++.+|.. .+++|++|++++|++++++ +..|+++++|++|++++|+++......+..+  .++.
T Consensus        97 ~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L--~L~~  173 (562)
T 3a79_B           97 LFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL--HLSC  173 (562)
T ss_dssp             TTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS--CEEE
T ss_pred             CCCCCCCEEECCCCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc--eeeE
Confidence            9999999999999999999887 6999999999999999986 4789999999999999999987543333333  2388


Q ss_pred             eEEeeccc
Q psy14765        180 LTLDCRVQ  187 (269)
Q Consensus       180 l~l~~n~~  187 (269)
                      +.++.|.+
T Consensus       174 L~L~~n~l  181 (562)
T 3a79_B          174 ILLDLVSY  181 (562)
T ss_dssp             EEEEESSC
T ss_pred             EEeecccc
Confidence            89998877

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.85  E-value=4.4e-21  Score=176.35  Aligned_cols=157  Identities=25%  Similarity=0.409  Sum_probs=139.3

Q ss_pred             CCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhc
Q psy14765         22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR  101 (269)
Q Consensus        22 ~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~  101 (269)
                      +||..|.|+         |++++++++|..+++++++|++++|.++.+++..|.  ++++|++|++++|+|+++++.+|.
T Consensus         3 ~C~~~~~c~---------~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~   71 (549)
T 2z81_A            3 SCDASGVCD---------GRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLR--ACANLQVLILKSSRINTIEGDAFY   71 (549)
T ss_dssp             EECTTSEEE---------CTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTS--SCTTCCEEECTTSCCCEECTTTTT
T ss_pred             cCCCCceEE---------CCCCccccccccCCCCccEEECcCCccCccChhhhh--cCCcccEEECCCCCcCccChhhcc
Confidence            588888774         688999999999999999999999999999888888  899999999999999999999999


Q ss_pred             CCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccC-ccccCCCCCCCEEEccCCc-ceeeCcccccccccCC
Q psy14765        102 GVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQIS-SYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYVMVLPG  177 (269)
Q Consensus       102 ~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~~l  177 (269)
                      ++++|++|++++|.++.+++..+  +++|++|++++|.++++. +..++++++|++|++++|. +..+++..|..++. +
T Consensus        72 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~-L  150 (549)
T 2z81_A           72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS-L  150 (549)
T ss_dssp             TCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE-E
T ss_pred             ccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccc-c
Confidence            99999999999999999888755  999999999999999753 4568899999999999998 78888888888876 7


Q ss_pred             CeeEEeeccccCC
Q psy14765        178 SNLTLDCRVQSAT  190 (269)
Q Consensus       178 ~~l~l~~n~~~~~  190 (269)
                      +.+.++.|.+...
T Consensus       151 ~~L~L~~n~l~~~  163 (549)
T 2z81_A          151 NELEIKALSLRNY  163 (549)
T ss_dssp             EEEEEEETTCCEE
T ss_pred             CeeeccCCccccc
Confidence            8899998887653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.84  E-value=2.4e-20  Score=157.09  Aligned_cols=172  Identities=19%  Similarity=0.261  Sum_probs=95.6

Q ss_pred             CcEEEcCCCCCcccCCCC-CCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCC
Q psy14765         35 KRTVECIDRNFYTIPEGI-DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD  113 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~-~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~  113 (269)
                      -+.++++++.++.++.-- .++++.|++++|.++.++  .+.  .+++|++|++++|.++++++..|..+++|++|++++
T Consensus        43 L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  118 (272)
T 3rfs_A           43 IDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALK--ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE  118 (272)
T ss_dssp             CCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             eeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhc--CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence            355666666655554311 155666666666666543  233  556666666666666666655556666666666666


Q ss_pred             CCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCC
Q psy14765        114 NLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATP  191 (269)
Q Consensus       114 N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~  191 (269)
                      |.++.++...+  +++|+.|++++|.++++++..|+.+++|+.|++++|+++++++..+..++. ++.+.+++|.+...+
T Consensus       119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~  197 (272)
T 3rfs_A          119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ-LKDLRLYQNQLKSVP  197 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCSCCC
T ss_pred             CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCcc-CCEEECCCCcCCccC
Confidence            66665555544  566666666666666665555556666666666666666665555555544 556666666555544


Q ss_pred             ccccceecccccccccccCccc
Q psy14765        192 CRIMWSINRKIYDHVNWNSNKI  213 (269)
Q Consensus       192 ~~~~~~~~~~~l~~l~~~~n~~  213 (269)
                      +...  .....++.+++.+|.+
T Consensus       198 ~~~~--~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          198 DGVF--DRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             TTTT--TTCTTCCEEECCSSCB
T ss_pred             HHHH--hCCcCCCEEEccCCCc
Confidence            4321  1122255555555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.84  E-value=3.9e-20  Score=157.29  Aligned_cols=156  Identities=19%  Similarity=0.176  Sum_probs=95.9

Q ss_pred             cEEEcCCCCCcccCCCC-CCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCC
Q psy14765         36 RTVECIDRNFYTIPEGI-DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN  114 (269)
Q Consensus        36 ~~v~c~~~~l~~ip~~~-~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N  114 (269)
                      +.+++++|.++.+|... .++|+.|++++|.++.++... .  ++++|+.|++++|+|+.+++..|.++++|+.|++++|
T Consensus        58 ~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-~--~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N  134 (290)
T 1p9a_G           58 TQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-Q--TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN  134 (290)
T ss_dssp             CEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCT-T--TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred             CEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhh-c--cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence            34444444444443321 145666666666666555433 3  5666777777777777666666666777777777777


Q ss_pred             CCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCc
Q psy14765        115 LLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPC  192 (269)
Q Consensus       115 ~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~  192 (269)
                      +++.++...|  +++|+.|+|++|+++++++..|..+++|+.|+|++|+++.++...+....  ++.+.+.+|++. +.|
T Consensus       135 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~--L~~l~L~~Np~~-C~c  211 (290)
T 1p9a_G          135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL--LPFAFLHGNPWL-CNC  211 (290)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCC--CSEEECCSCCBC-CSG
T ss_pred             CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhccccc--CCeEEeCCCCcc-CcC
Confidence            7776666665  66677777777777766666666666777777777777766665554432  466667776643 345


Q ss_pred             cccce
Q psy14765        193 RIMWS  197 (269)
Q Consensus       193 ~~~~~  197 (269)
                      ++.|+
T Consensus       212 ~~~~l  216 (290)
T 1p9a_G          212 EILYF  216 (290)
T ss_dssp             GGHHH
T ss_pred             ccHHH
Confidence            55554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.83  E-value=4.7e-20  Score=155.25  Aligned_cols=158  Identities=19%  Similarity=0.253  Sum_probs=142.0

Q ss_pred             CCcEEEcCCCCCcccCCCC-CCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcC
Q psy14765         34 GKRTVECIDRNFYTIPEGI-DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS  112 (269)
Q Consensus        34 ~~~~v~c~~~~l~~ip~~~-~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~  112 (269)
                      .-+.+++++|.++.++... .++|+.|++++|.++.+++..|.  ++++|++|++++|+++.+++..|..+++|++|+++
T Consensus        64 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  141 (272)
T 3rfs_A           64 NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFD--KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA  141 (272)
T ss_dssp             TCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhc--CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECC
Confidence            3679999999999876322 27999999999999999999888  89999999999999999999989999999999999


Q ss_pred             CCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCC
Q psy14765        113 DNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSAT  190 (269)
Q Consensus       113 ~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~  190 (269)
                      +|.++.++...+  +++|+.|++++|+++++++..|+.+++|+.|++++|+++++++..+..++. ++.+.+++|.+.+.
T Consensus       142 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~N~~~~~  220 (272)
T 3rfs_A          142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS-LQYIWLHDNPWDCT  220 (272)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT-CCEEECCSSCBCCC
T ss_pred             CCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcC-CCEEEccCCCcccc
Confidence            999999988876  999999999999999999988999999999999999999999988888876 89999999987654


Q ss_pred             Cccc
Q psy14765        191 PCRI  194 (269)
Q Consensus       191 ~~~~  194 (269)
                      .+.+
T Consensus       221 ~~~l  224 (272)
T 3rfs_A          221 CPGI  224 (272)
T ss_dssp             TTTT
T ss_pred             CcHH
Confidence            4333

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=1.9e-20  Score=154.53  Aligned_cols=180  Identities=13%  Similarity=0.177  Sum_probs=154.4

Q ss_pred             CCcEEEcCCCCCcccCCCCC---CCceEEEeecCC-ccccccccccccCCCcccEEEccc-ccccccchhhhcCCCCCCE
Q psy14765         34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNN-INVLQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAFRGVTNMDE  108 (269)
Q Consensus        34 ~~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~-l~~i~~~~f~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~  108 (269)
                      .-+.++.++++++.+|...+   ++++.|++++|. ++.+++..|.  ++++|++|++++ |+|+.+++.+|.++++|++
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~--~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY--NLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEE--SCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcC--CCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            46899999999999998554   799999999997 9999999998  899999999999 9999999999999999999


Q ss_pred             EEcCCCCCCCcCCccC-ccccc---eeecCCC-cccccCccccCCCCCCC-EEEccCCcceeeCcccccccccCCCeeEE
Q psy14765        109 LDLSDNLLSTVPSLIY-IPYLK---SINLAHN-PINQISSYSFQSTPGIR-YIDMSNCQIHTIYSEAFYVMVLPGSNLTL  182 (269)
Q Consensus       109 L~L~~N~l~~l~~~~~-l~~L~---~L~L~~N-~i~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~~l~~l~l  182 (269)
                      |++++|.++.+|. .. +++|+   .|++++| .++++++..|.++++|+ .|++++|+++.++...|.. . .++.+.+
T Consensus       110 L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~-~L~~L~L  186 (239)
T 2xwt_C          110 LGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-T-KLDAVYL  186 (239)
T ss_dssp             EEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-C-EEEEEEC
T ss_pred             EeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-C-CCCEEEc
Confidence            9999999999987 33 78887   9999999 99999999999999999 9999999999999988877 3 3689999


Q ss_pred             eecc-ccCCCccccceecccccccccccCccccccccc
Q psy14765        183 DCRV-QSATPCRIMWSINRKIYDHVNWNSNKINIKEET  219 (269)
Q Consensus       183 ~~n~-~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~  219 (269)
                      +.|. +...++...... ...++.+++.+|.+...+..
T Consensus       187 ~~n~~l~~i~~~~~~~l-~~~L~~L~l~~N~l~~l~~~  223 (239)
T 2xwt_C          187 NKNKYLTVIDKDAFGGV-YSGPSLLDVSQTSVTALPSK  223 (239)
T ss_dssp             TTCTTCCEECTTTTTTC-SBCCSEEECTTCCCCCCCCT
T ss_pred             CCCCCcccCCHHHhhcc-ccCCcEEECCCCccccCChh
Confidence            9994 776665432221 03488889999988655443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.83  E-value=2e-19  Score=155.25  Aligned_cols=177  Identities=18%  Similarity=0.283  Sum_probs=137.6

Q ss_pred             CcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccc--cchhhhcCCCCCCEEEcC
Q psy14765         35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF--VDDRAFRGVTNMDELDLS  112 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~--~~~~~~~~l~~L~~L~L~  112 (269)
                      -+.++.++|.++.+|..++++++.|++++|.++.+++..|.  ++++|+.|++++|.++.  +.+..|.++++|+.|+++
T Consensus       102 L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~  179 (330)
T 1xku_A          102 LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFN--GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA  179 (330)
T ss_dssp             CCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHT--TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred             CCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhc--CCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence            46777777777777777777777777777777777777777  77888888888888864  666777888888888888


Q ss_pred             CCCCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCc
Q psy14765        113 DNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPC  192 (269)
Q Consensus       113 ~N~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~  192 (269)
                      +|.++.+|...+ ++|+.|++++|+++++.+..|..+++|+.|++++|.++++++..+..++. ++.+.+++|.+...|.
T Consensus       180 ~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~lp~  257 (330)
T 1xku_A          180 DTNITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH-LRELHLNNNKLVKVPG  257 (330)
T ss_dssp             SSCCCSCCSSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT-CCEEECCSSCCSSCCT
T ss_pred             CCccccCCcccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCC-CCEEECCCCcCccCCh
Confidence            888888776553 78888889888888888888888889999999999999888878877765 7888998888887765


Q ss_pred             cccceecccccccccccCcccccccc
Q psy14765        193 RIMWSINRKIYDHVNWNSNKINIKEE  218 (269)
Q Consensus       193 ~~~~~~~~~~l~~l~~~~n~~~~~~~  218 (269)
                      .+.   ....++.+++.+|.+...+.
T Consensus       258 ~l~---~l~~L~~L~l~~N~i~~~~~  280 (330)
T 1xku_A          258 GLA---DHKYIQVVYLHNNNISAIGS  280 (330)
T ss_dssp             TTT---TCSSCCEEECCSSCCCCCCT
T ss_pred             hhc---cCCCcCEEECCCCcCCccCh
Confidence            443   33447888888888764433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.82  E-value=1.9e-19  Score=162.13  Aligned_cols=177  Identities=20%  Similarity=0.250  Sum_probs=116.8

Q ss_pred             CCcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765         34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD  110 (269)
Q Consensus        34 ~~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  110 (269)
                      ..+.+++++|.++.+++..+   ++|+.|++++|.|+.+++..|.  ++++|++|+|++|+|+.+++..|.++++|++|+
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN--GLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhcc--CcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            35789999999998866543   7899999999999998888888  888999999999999988888888888888888


Q ss_pred             cCCCCCCCcCCccC--ccccceeecCC-CcccccCccc----------------------cCCCCCCCEEEccCCcceee
Q psy14765        111 LSDNLLSTVPSLIY--IPYLKSINLAH-NPINQISSYS----------------------FQSTPGIRYIDMSNCQIHTI  165 (269)
Q Consensus       111 L~~N~l~~l~~~~~--l~~L~~L~L~~-N~i~~~~~~~----------------------~~~l~~L~~L~L~~N~l~~~  165 (269)
                      +++|.++.++...|  +++|+.|++++ |.+..+++..                      +..+++|+.|+|++|.++++
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~  233 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI  233 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEE
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCccc
Confidence            88888887766443  44444444443 2333333322                      34444555555555555555


Q ss_pred             CcccccccccCCCeeEEeeccccCCCccccceecccccccccccCccccc
Q psy14765        166 YSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINI  215 (269)
Q Consensus       166 ~~~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~  215 (269)
                      ++..|..++. ++.+.+++|.+...++..  +.....++.+++.+|++..
T Consensus       234 ~~~~~~~l~~-L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~  280 (452)
T 3zyi_A          234 RPGSFHGLSS-LKKLWVMNSQVSLIERNA--FDGLASLVELNLAHNNLSS  280 (452)
T ss_dssp             CGGGGTTCTT-CCEEECTTSCCCEECTTT--TTTCTTCCEEECCSSCCSC
T ss_pred             CcccccCccC-CCEEEeCCCcCceECHHH--hcCCCCCCEEECCCCcCCc
Confidence            5555555554 555666555554443322  1222335566666666543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.82  E-value=1.6e-19  Score=159.49  Aligned_cols=135  Identities=21%  Similarity=0.372  Sum_probs=115.9

Q ss_pred             CcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765         35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL  111 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  111 (269)
                      .+.++++++.++.+|..++   ++++.|++++|.++.+++..|.  ++++|++|++++|+++.+++..|.++++|++|++
T Consensus        47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhcc--CCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            3567888888888887653   7899999999999988888887  8899999999999999998888889999999999


Q ss_pred             CCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCccccc
Q psy14765        112 SDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY  171 (269)
Q Consensus       112 ~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  171 (269)
                      ++|.++.+|...|  +++|++|++++|.++++++..|+.+++|+.|++++|.++.++...+.
T Consensus       125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~  186 (390)
T 3o6n_A          125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP  186 (390)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCT
T ss_pred             CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcccccccc
Confidence            9999999988876  88999999999999998888888899999999999988887655443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.82  E-value=1.6e-19  Score=174.43  Aligned_cols=159  Identities=20%  Similarity=0.192  Sum_probs=137.2

Q ss_pred             CCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccc-cccccchhhhcCCC
Q psy14765         26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFVDDRAFRGVT  104 (269)
Q Consensus        26 ~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~  104 (269)
                      .|.|.    ...++|++++++.+|. ++++++.|++++|.|+.+.+..|.  ++++|++|++++| .+..+++.+|.+++
T Consensus         1 ~C~~~----~~~~dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~--~l~~L~~LdLs~n~~~~~i~~~~f~~L~   73 (844)
T 3j0a_A            1 SCSFD----GRIAFYRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFP--FLEQLQLLELGSQYTPLTIDKEAFRNLP   73 (844)
T ss_dssp             CCBTT----TEEEEESCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCS--SCCSCSEEEECTTCCCCEECTTTTSSCT
T ss_pred             CceEe----ceEEEccCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCc--ccccCeEEeCCCCCCccccCHHHhcCCC
Confidence            47776    6899999999999999 889999999999999999988898  8999999999999 56677788999999


Q ss_pred             CCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCc--cccCCCCCCCEEEccCCcceeeCc-ccccccccCCCe
Q psy14765        105 NMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISS--YSFQSTPGIRYIDMSNCQIHTIYS-EAFYVMVLPGSN  179 (269)
Q Consensus       105 ~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~~l~~  179 (269)
                      +|++|+|++|.++.+.+..|  +++|++|+|++|.+++..+  ..|+.+++|++|+|++|.++++.+ ..|..++. ++.
T Consensus        74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~-L~~  152 (844)
T 3j0a_A           74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS-LKS  152 (844)
T ss_dssp             TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSS-CCE
T ss_pred             CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCC-CCE
Confidence            99999999999998866666  9999999999999987433  348899999999999999988765 56777776 788


Q ss_pred             eEEeeccccCCCc
Q psy14765        180 LTLDCRVQSATPC  192 (269)
Q Consensus       180 l~l~~n~~~~~~~  192 (269)
                      +.++.|.+....+
T Consensus       153 L~Ls~N~i~~~~~  165 (844)
T 3j0a_A          153 IDFSSNQIFLVCE  165 (844)
T ss_dssp             EEEESSCCCCCCS
T ss_pred             EECCCCcCCeeCH
Confidence            9999888765443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.81  E-value=3.5e-19  Score=159.80  Aligned_cols=154  Identities=23%  Similarity=0.316  Sum_probs=93.4

Q ss_pred             cEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhc-----------
Q psy14765         36 RTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR-----------  101 (269)
Q Consensus        36 ~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~-----------  101 (269)
                      +.++.++|.++.++...+   ++|+.|++++|+++.+++..|.  ++++|++|++++|+|+.+++..|.           
T Consensus        91 ~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~  168 (440)
T 3zyj_A           91 EILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV--YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG  168 (440)
T ss_dssp             CEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSC--SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhh--ccccCceeeCCCCcccccCHHHhhhCcccCEeCCC
Confidence            677888888877765433   6777778887777777777776  677777777777777766654444           


Q ss_pred             --------------CCCCCCEEEcCCCCCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCc
Q psy14765        102 --------------GVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYS  167 (269)
Q Consensus       102 --------------~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  167 (269)
                                    ++++|+.|++++|.++.+|....+++|+.|+|++|+++++.+..|.++++|+.|+|++|+++.+++
T Consensus       169 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  248 (440)
T 3zyj_A          169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER  248 (440)
T ss_dssp             CCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred             CCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh
Confidence                          444445555555555544431114555555666666665555555555555555555555555555


Q ss_pred             ccccccccCCCeeEEeeccccCCCc
Q psy14765        168 EAFYVMVLPGSNLTLDCRVQSATPC  192 (269)
Q Consensus       168 ~~~~~l~~~l~~l~l~~n~~~~~~~  192 (269)
                      ..|..++. ++.++++.|.+...++
T Consensus       249 ~~~~~l~~-L~~L~L~~N~l~~~~~  272 (440)
T 3zyj_A          249 NAFDNLQS-LVEINLAHNNLTLLPH  272 (440)
T ss_dssp             TSSTTCTT-CCEEECTTSCCCCCCT
T ss_pred             hhhcCCCC-CCEEECCCCCCCccCh
Confidence            55555443 4555555555554443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.81  E-value=3.2e-20  Score=162.53  Aligned_cols=160  Identities=18%  Similarity=0.263  Sum_probs=139.9

Q ss_pred             CcEEEcCCCCCcccCCCCC----CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765         35 KRTVECIDRNFYTIPEGID----LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD  110 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~----~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  110 (269)
                      .+.+++++|.++.++...+    ++|+.|++++|+|+.+++..|.  ++++|+.|+|++|+|+.+++..|.++++|+.|+
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV--PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhcc--CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            5789999999999988643    7899999999999999999998  899999999999999999999999999999999


Q ss_pred             cCCCCCCCcCCccC--ccccceeecCCCcccccCcccc---CCCCCCCEEEccCCcceeeCcccccccccC-CCeeEEee
Q psy14765        111 LSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSF---QSTPGIRYIDMSNCQIHTIYSEAFYVMVLP-GSNLTLDC  184 (269)
Q Consensus       111 L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~-l~~l~l~~  184 (269)
                      |++|+|+.+++..|  +++|+.|+|++|+|+.++...|   ..+++|+.|+|++|+|+.++...+..++.. +..+.+.+
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred             CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence            99999999987777  9999999999999999988877   568999999999999999998877766531 36788888


Q ss_pred             ccccCCCccccce
Q psy14765        185 RVQSATPCRIMWS  197 (269)
Q Consensus       185 n~~~~~~~~~~~~  197 (269)
                      |++. +.|.+.|+
T Consensus       199 N~~~-C~C~l~~~  210 (361)
T 2xot_A          199 NPLE-CDCKLYQL  210 (361)
T ss_dssp             SCEE-CCHHHHHH
T ss_pred             CCcc-CCcCcHHH
Confidence            8854 45665543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.81  E-value=1.6e-19  Score=168.03  Aligned_cols=159  Identities=19%  Similarity=0.270  Sum_probs=138.9

Q ss_pred             CCcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765         34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD  110 (269)
Q Consensus        34 ~~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  110 (269)
                      ..+++++++|.|+.+|+..+   ++|+.|++++|+|+.|++++|.  ++++|++|+|++|+|+.+++++|.++++|++|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~--~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhc--CCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            46899999999999998654   7999999999999999999998  899999999999999999999999999999999


Q ss_pred             cCCCCCCCcCCccC--ccccceeecCCCcccccC-ccccCCCCCCCEEEccCCcceeeCccccccccc---CCCeeEEee
Q psy14765        111 LSDNLLSTVPSLIY--IPYLKSINLAHNPINQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVL---PGSNLTLDC  184 (269)
Q Consensus       111 L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~---~l~~l~l~~  184 (269)
                      +++|+++.+++..|  +++|+.|++++|.++++. +..++.+++|++|++++|+++++++..+..+..   ....+.+..
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~  210 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  210 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence            99999999998877  999999999999998864 566788999999999999999999888766542   223566667


Q ss_pred             ccccCCCccc
Q psy14765        185 RVQSATPCRI  194 (269)
Q Consensus       185 n~~~~~~~~~  194 (269)
                      |.+...++..
T Consensus       211 n~l~~i~~~~  220 (635)
T 4g8a_A          211 NPMNFIQPGA  220 (635)
T ss_dssp             CCCCEECTTT
T ss_pred             CcccccCccc
Confidence            7666555443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.81  E-value=2.9e-19  Score=154.47  Aligned_cols=175  Identities=21%  Similarity=0.290  Sum_probs=125.1

Q ss_pred             CcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccc--cchhhhcCCCCCCEEEcC
Q psy14765         35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF--VDDRAFRGVTNMDELDLS  112 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~--~~~~~~~~l~~L~~L~L~  112 (269)
                      -+.++.++|.++.+|..++++++.|++++|.++.+++..|.  ++++|+.|++++|.++.  +.+..|..+ +|+.|+++
T Consensus       104 L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~  180 (332)
T 2ft3_A          104 LQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFS--GLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS  180 (332)
T ss_dssp             CCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGS--SCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred             CCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhC--CCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence            35666666666666666666677777777777766666666  66777777777777653  555566666 67777777


Q ss_pred             CCCCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCc
Q psy14765        113 DNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPC  192 (269)
Q Consensus       113 ~N~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~  192 (269)
                      +|.++.+|... .++|+.|++++|.++++++..|..+++|+.|++++|+++++++..+..++. ++.+.+++|.+...|.
T Consensus       181 ~n~l~~l~~~~-~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~lp~  258 (332)
T 2ft3_A          181 EAKLTGIPKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT-LRELHLDNNKLSRVPA  258 (332)
T ss_dssp             SSBCSSCCSSS-CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTT-CCEEECCSSCCCBCCT
T ss_pred             CCCCCccCccc-cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCC-CCEEECCCCcCeecCh
Confidence            77777666544 367888888888888887777888888888888888888888777777765 7888888888877765


Q ss_pred             cccceecccccccccccCccccccc
Q psy14765        193 RIMWSINRKIYDHVNWNSNKINIKE  217 (269)
Q Consensus       193 ~~~~~~~~~~l~~l~~~~n~~~~~~  217 (269)
                      .+.   ....++.+++.+|.+...+
T Consensus       259 ~l~---~l~~L~~L~l~~N~l~~~~  280 (332)
T 2ft3_A          259 GLP---DLKLLQVVYLHTNNITKVG  280 (332)
T ss_dssp             TGG---GCTTCCEEECCSSCCCBCC
T ss_pred             hhh---cCccCCEEECCCCCCCccC
Confidence            443   3334777888888776443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.81  E-value=3.5e-19  Score=165.81  Aligned_cols=134  Identities=21%  Similarity=0.371  Sum_probs=118.2

Q ss_pred             cEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcC
Q psy14765         36 RTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS  112 (269)
Q Consensus        36 ~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~  112 (269)
                      +.++++++.+..+|..++   ++|+.|++++|.++.+++..|.  ++++|++|++++|.|+++++..|.++++|++|+|+
T Consensus        54 ~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  131 (597)
T 3oja_B           54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  131 (597)
T ss_dssp             SEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             eEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhc--CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence            677788888888887653   7899999999999999988888  88999999999999999999889999999999999


Q ss_pred             CCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCccccc
Q psy14765        113 DNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY  171 (269)
Q Consensus       113 ~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  171 (269)
                      +|.++.+|...|  +++|+.|++++|.++++++..|+.+++|+.|++++|.+++++...+.
T Consensus       132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~  192 (597)
T 3oja_B          132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP  192 (597)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCT
T ss_pred             CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhh
Confidence            999999998876  89999999999999999888899999999999999999887655443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.80  E-value=2e-19  Score=154.53  Aligned_cols=196  Identities=16%  Similarity=0.136  Sum_probs=144.0

Q ss_pred             CCcEEEcCCCCCc---ccCCCCC--CCceEEEeec-CCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCC
Q psy14765         34 GKRTVECIDRNFY---TIPEGID--LDTQVLDLSS-NNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD  107 (269)
Q Consensus        34 ~~~~v~c~~~~l~---~ip~~~~--~~l~~L~l~~-n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~  107 (269)
                      ..+.++++++.+.   .+|..+.  ++|+.|++++ |.+....+..|.  .+++|++|++++|++++..|..|..+++|+
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA--KLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG--GCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh--cCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            3568889999998   4777665  7999999995 988855555566  899999999999999987788899999999


Q ss_pred             EEEcCCCCCC-CcCCccC-ccccceeecCCCcccccCccccCCCC-CCCEEEccCCcceeeCcccccccccCCCeeEEee
Q psy14765        108 ELDLSDNLLS-TVPSLIY-IPYLKSINLAHNPINQISSYSFQSTP-GIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDC  184 (269)
Q Consensus       108 ~L~L~~N~l~-~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~  184 (269)
                      +|++++|.++ .+|.... +++|++|++++|++++..+..+..++ +|+.|++++|++++..+..+..+.  ++.+.++.
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~--L~~L~Ls~  206 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--LAFVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC--CSEEECCS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc--ccEEECcC
Confidence            9999999999 5665555 99999999999999977777788887 899999999999877777777765  57888887


Q ss_pred             ccccCCCccccceecccccccccccCccccccccceeecCCCeeeeeeccc
Q psy14765        185 RVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVFSGGV  235 (269)
Q Consensus       185 n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~n  235 (269)
                      |.+....+..  +.....++.+++.+|.+......+....+...+.+..+.
T Consensus       207 N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~  255 (313)
T 1ogq_A          207 NMLEGDASVL--FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR  255 (313)
T ss_dssp             SEEEECCGGG--CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC
T ss_pred             CcccCcCCHH--HhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCc
Confidence            7766544322  222233555566666554332333333333444444333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.80  E-value=7.6e-19  Score=155.04  Aligned_cols=105  Identities=18%  Similarity=0.241  Sum_probs=57.3

Q ss_pred             CcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765         35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL  111 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  111 (269)
                      -+.++.+++.++.+|+...   ++|+.|++++|.++.+++..|.  ++++|++|++++|+++.+++..|..+++|++|++
T Consensus        71 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  148 (390)
T 3o6n_A           71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ--NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  148 (390)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhc--CCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence            3455666666555554222   4555555555555555555555  5555555555555555555555555555555555


Q ss_pred             CCCCCCCcCCccC--ccccceeecCCCccccc
Q psy14765        112 SDNLLSTVPSLIY--IPYLKSINLAHNPINQI  141 (269)
Q Consensus       112 ~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~  141 (269)
                      ++|.++.+++..+  +++|+.|++++|+++++
T Consensus       149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          149 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             CSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             CCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence            5555555544433  55555555555555443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.80  E-value=3.7e-19  Score=152.80  Aligned_cols=176  Identities=12%  Similarity=0.081  Sum_probs=79.7

Q ss_pred             CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCC-CcCCccC-cc-ccce
Q psy14765         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS-TVPSLIY-IP-YLKS  130 (269)
Q Consensus        54 ~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~-l~-~L~~  130 (269)
                      ++|+.|++++|.++...+..|.  ++++|++|++++|.+++..|..|..+++|++|++++|.++ .+|...+ ++ +|+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~  178 (313)
T 1ogq_A          101 TQLHYLYITHTNVSGAIPDFLS--QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS  178 (313)
T ss_dssp             TTCSEEEEEEECCEEECCGGGG--GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCE
T ss_pred             CCCCEEECcCCeeCCcCCHHHh--CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcE
Confidence            4455555555555433333333  4455555555555555444444555555555555555554 3444333 33 4555


Q ss_pred             eecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCccccceecccccccccccC
Q psy14765        131 INLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNS  210 (269)
Q Consensus       131 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~  210 (269)
                      |++++|++++..+..+..+. |+.|++++|.+++..+..|..++. ++.+.++.|.+....+.+..   ...++.+++.+
T Consensus       179 L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~---l~~L~~L~Ls~  253 (313)
T 1ogq_A          179 MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKN-TQKIHLAKNSLAFDLGKVGL---SKNLNGLDLRN  253 (313)
T ss_dssp             EECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSC-CSEEECCSSEECCBGGGCCC---CTTCCEEECCS
T ss_pred             EECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCC-CCEEECCCCceeeecCcccc---cCCCCEEECcC
Confidence            55555555544444444443 555555555555544444444443 44555554444433322211   12244444444


Q ss_pred             cccc-ccccceeecCCCeeeeeeccce
Q psy14765        211 NKIN-IKEETVLSKDNSYLSVFSGGVD  236 (269)
Q Consensus       211 n~~~-~~~~~~~~~~~~~~~~~~~~n~  236 (269)
                      |.+. ..+..+........+.+..+.+
T Consensus       254 N~l~~~~p~~l~~l~~L~~L~Ls~N~l  280 (313)
T 1ogq_A          254 NRIYGTLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             SCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             CcccCcCChHHhcCcCCCEEECcCCcc
Confidence            4443 3333333333334444444433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.80  E-value=5.5e-19  Score=159.87  Aligned_cols=156  Identities=21%  Similarity=0.297  Sum_probs=135.3

Q ss_pred             CCcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765         34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD  110 (269)
Q Consensus        34 ~~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  110 (269)
                      ..+.+++++|.++.+++..+   ++|+.|++++|.++.+.+..|.  ++++|++|++++|+++.+++..|.++++|++|+
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN--NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh--CCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence            35789999999999876444   7899999999999999888888  899999999999999999988899999999999


Q ss_pred             cCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeecccc
Q psy14765        111 LSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQS  188 (269)
Q Consensus       111 L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~  188 (269)
                      +++|.++.+++..+  +++|+.|++++|.+.++.+..|.++++|+.|++++|.++++++..+..++. ++.+.+..|.+.
T Consensus       111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~i~  189 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG-LIVLRLRHLNIN  189 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT-CCEEEEESCCCC
T ss_pred             CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC-CcEEeCCCCcCc
Confidence            99999998877666  899999999999999998888999999999999999999888877777765 778888877765


Q ss_pred             CCCc
Q psy14765        189 ATPC  192 (269)
Q Consensus       189 ~~~~  192 (269)
                      ..+.
T Consensus       190 ~~~~  193 (477)
T 2id5_A          190 AIRD  193 (477)
T ss_dssp             EECT
T ss_pred             EeCh
Confidence            5443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=6.6e-19  Score=143.76  Aligned_cols=130  Identities=19%  Similarity=0.281  Sum_probs=121.4

Q ss_pred             CCcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765         34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD  110 (269)
Q Consensus        34 ~~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  110 (269)
                      ..+.+++++|.++.+|...+   ++|+.|++++|.|+.+.+..|.  ++++|++|+|++|+|+.+++..|.++++|+.|+
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ--GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTT--TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhh--CCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence            35899999999999988554   7899999999999999999998  999999999999999999999999999999999


Q ss_pred             cCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceee
Q psy14765        111 LSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI  165 (269)
Q Consensus       111 L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~  165 (269)
                      |++|+|+.+++..|  +++|+.|+|++|+++++++..|..+++|+.|+|++|.+...
T Consensus       111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            99999999987777  99999999999999999998999999999999999999764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.79  E-value=8.2e-19  Score=160.35  Aligned_cols=146  Identities=18%  Similarity=0.314  Sum_probs=131.9

Q ss_pred             CcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCC
Q psy14765         35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN  114 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N  114 (269)
                      .+.++|++++++.+|..++++++.|++++|.++.+++..|.  ++++|++|++++|+|+++.+..|.++++|++|++++|
T Consensus         2 ~~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            2 EFLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDIL--SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CCEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHT--TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             cceEecCCCCcccccccccccccEEECCCCcccccChhhcc--ccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            47899999999999999999999999999999999998888  8999999999999999999999999999999999999


Q ss_pred             CCCCcCCccCccccceeecCCCcccccC-ccccCCCCCCCEEEccCCcceeeCcccccccccCC--CeeEEeeccc
Q psy14765        115 LLSTVPSLIYIPYLKSINLAHNPINQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPG--SNLTLDCRVQ  187 (269)
Q Consensus       115 ~l~~l~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l--~~l~l~~n~~  187 (269)
                      +++.+|.. .+++|++|++++|++++++ |..|+++++|++|++++|.+++.   .+..+.. +  +.+.++.|.+
T Consensus        80 ~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~-L~L~~L~l~~n~l  150 (520)
T 2z7x_B           80 KLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAH-LNISKVLLVLGET  150 (520)
T ss_dssp             CCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTT-SCEEEEEEEECTT
T ss_pred             ceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hcccccc-ceeeEEEeecccc
Confidence            99999877 6999999999999999863 57899999999999999999873   3444443 4  8888888876

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=1.2e-18  Score=142.21  Aligned_cols=130  Identities=17%  Similarity=0.339  Sum_probs=120.1

Q ss_pred             CcEEEcCCCCCcccCC-CCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765         35 KRTVECIDRNFYTIPE-GID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD  110 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~-~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  110 (269)
                      .+.+++++|.++.+++ ..+   ++|+.|++++|.|+.+++..|.  ++++|++|++++|+|+.+++..|.++++|++|+
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  111 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE--GASGVNEILLTSNRLENVQHKMFKGLESLKTLM  111 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhC--CCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence            4789999999999854 433   7999999999999999999998  999999999999999999999999999999999


Q ss_pred             cCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeC
Q psy14765        111 LSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY  166 (269)
Q Consensus       111 L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~  166 (269)
                      +++|+|+.+++..|  +++|+.|+|++|+++++.+..|..+++|+.|+|++|.++...
T Consensus       112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A          112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            99999999977776  999999999999999999999999999999999999998643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.79  E-value=1.3e-18  Score=162.00  Aligned_cols=105  Identities=18%  Similarity=0.241  Sum_probs=67.5

Q ss_pred             CcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765         35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL  111 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  111 (269)
                      -+.++++++.++.+|+...   ++|+.|++++|.++.+++..|.  ++++|++|++++|.|+.+++..|.++++|++|++
T Consensus        77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  154 (597)
T 3oja_B           77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ--NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  154 (597)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc--CCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence            4567777777766655332   5666777777777666666665  6666667777666666666666666666666666


Q ss_pred             CCCCCCCcCCccC--ccccceeecCCCccccc
Q psy14765        112 SDNLLSTVPSLIY--IPYLKSINLAHNPINQI  141 (269)
Q Consensus       112 ~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~  141 (269)
                      ++|.++.+++..+  +++|+.|++++|.++++
T Consensus       155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  186 (597)
T 3oja_B          155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  186 (597)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             eCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence            6666666655444  66666666666665544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.79  E-value=7.2e-19  Score=152.02  Aligned_cols=197  Identities=12%  Similarity=0.122  Sum_probs=149.7

Q ss_pred             CCCcEEEcCCCCCcccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765         33 AGKRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD  110 (269)
Q Consensus        33 ~~~~~v~c~~~~l~~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  110 (269)
                      .....++++++.++.+|..+.  ++|+.|++++|.++.+|... .  .+++|++|++++|+++.++ ..|..+++|++|+
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~-~--~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~  156 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM-Q--QFAGLETLTLARNPLRALP-ASIASLNRLRELS  156 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCG-G--GGTTCSEEEEESCCCCCCC-GGGGGCTTCCEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHH-h--ccCCCCEEECCCCccccCc-HHHhcCcCCCEEE
Confidence            456799999999999999876  79999999999999887654 4  7899999999999999774 5688999999999


Q ss_pred             cCCCCCC-CcCCcc--------C--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCe
Q psy14765        111 LSDNLLS-TVPSLI--------Y--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSN  179 (269)
Q Consensus       111 L~~N~l~-~l~~~~--------~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~  179 (269)
                      +++|.+. .+|...        +  +++|+.|++++|+++.++ ..++.+++|+.|++++|.++++++. +..++. ++.
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~-L~~  233 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSALGPA-IHHLPK-LEE  233 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC-GGGGGCTTCCEEEEESSCCCCCCGG-GGGCTT-CCE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch-HhhcCCCCCCEEEccCCCCCcCchh-hccCCC-CCE
Confidence            9996554 677654        2  788999999999998774 4588889999999999999988764 666665 788


Q ss_pred             eEEeecccc-CCCccccceecccccccccccCccc-cccccceeecCCCeeeeeeccceeee
Q psy14765        180 LTLDCRVQS-ATPCRIMWSINRKIYDHVNWNSNKI-NIKEETVLSKDNSYLSVFSGGVDLAA  239 (269)
Q Consensus       180 l~l~~n~~~-~~~~~~~~~~~~~~l~~l~~~~n~~-~~~~~~~~~~~~~~~~~~~~~n~~~~  239 (269)
                      +.+++|.+. ..+..+.   ....++.+++.+|.+ +..+..+........+.+..++..+.
T Consensus       234 L~Ls~n~~~~~~p~~~~---~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~  292 (328)
T 4fcg_A          234 LDLRGCTALRNYPPIFG---GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR  292 (328)
T ss_dssp             EECTTCTTCCBCCCCTT---CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred             EECcCCcchhhhHHHhc---CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence            888875544 3333332   233477778777543 55666666666666666666655543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=2e-18  Score=141.76  Aligned_cols=131  Identities=18%  Similarity=0.249  Sum_probs=121.4

Q ss_pred             CCcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765         34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD  110 (269)
Q Consensus        34 ~~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  110 (269)
                      .-+.+++++|.++.+++..+   ++|+.|++++|+|+.+++..|.  ++++|+.|+|++|+|+.+++..|..+++|+.|+
T Consensus        41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD--SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcc--cCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence            35799999999999866443   7999999999999999999998  899999999999999999999999999999999


Q ss_pred             cCCCCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeC
Q psy14765        111 LSDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY  166 (269)
Q Consensus       111 L~~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~  166 (269)
                      +++|+|+.+|..+. +++|+.|+|++|+++++++..|..+++|+.|++++|.+..-.
T Consensus       119 Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          119 MCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             CCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             ccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            99999999998887 999999999999999999888999999999999999998643

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.78  E-value=6.5e-19  Score=150.44  Aligned_cols=198  Identities=15%  Similarity=0.200  Sum_probs=129.3

Q ss_pred             CcEEEcCCCCCccc---CCCC--CCCceEEEeecCCccccccccccccCCCcccEEEcccccccccch-hhhcCCCCCCE
Q psy14765         35 KRTVECIDRNFYTI---PEGI--DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD-RAFRGVTNMDE  108 (269)
Q Consensus        35 ~~~v~c~~~~l~~i---p~~~--~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~  108 (269)
                      -+.++.++|.++.+   |...  .++|+.|++++|.+..++.. |.  ++++|++|++++|+++.+++ ..|..+++|++
T Consensus        54 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~-~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  130 (306)
T 2z66_A           54 LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FL--GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY  130 (306)
T ss_dssp             CSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE-EE--TCTTCCEEECTTSEEESSTTTTTTTTCTTCCE
T ss_pred             CCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh-cC--CCCCCCEEECCCCcccccccchhhhhccCCCE
Confidence            46788888777654   2211  26778888888887777665 33  67778888888887777765 56777777888


Q ss_pred             EEcCCCCCCCcCCccC--ccccceeecCCCcccc-cCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeec
Q psy14765        109 LDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQ-ISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCR  185 (269)
Q Consensus       109 L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n  185 (269)
                      |++++|.++.+....+  +++|+.|++++|.+++ ..+..+..+++|+.|++++|.++++++..+..++. ++.+.+++|
T Consensus       131 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~N  209 (306)
T 2z66_A          131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS-LQVLNMSHN  209 (306)
T ss_dssp             EECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT-CCEEECTTS
T ss_pred             EECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCC-CCEEECCCC
Confidence            8888887776655555  7777788887777776 44566777777778888877777777777766665 677777777


Q ss_pred             cccCCCccccceecccccccccccCccccc-cccceeec-CCCeeeeeeccceee
Q psy14765        186 VQSATPCRIMWSINRKIYDHVNWNSNKINI-KEETVLSK-DNSYLSVFSGGVDLA  238 (269)
Q Consensus       186 ~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~-~~~~~~~~-~~~~~~~~~~~n~~~  238 (269)
                      .+...++..  +.....++.+++.+|.+.. .+..+... .....+.+.++.+.|
T Consensus       210 ~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          210 NFFSLDTFP--YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             CCSBCCSGG--GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             ccCccChhh--ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            766655432  2223346677777776643 22333333 234444444444433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.78  E-value=2e-18  Score=160.46  Aligned_cols=153  Identities=20%  Similarity=0.226  Sum_probs=127.4

Q ss_pred             CcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765         35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL  111 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  111 (269)
                      .+.+++++|.++.+++..+   ++|++|++++|.++.+.+..|.  ++++|++|++++|+++.+.+.+|.++++|++|++
T Consensus        35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ--SQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhcc--CccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            5799999999999866443   7899999999999999999898  8999999999999999999999999999999999


Q ss_pred             CCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCC--eeEEeeccc
Q psy14765        112 SDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGS--NLTLDCRVQ  187 (269)
Q Consensus       112 ~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~--~l~l~~n~~  187 (269)
                      ++|.++.+++..+  +++|++|++++|+++++....+..+++|+.|++++|.++++++..|..+.. ++  .+.++.|.+
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~l~L~l~~n~l  191 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ-ATNLSLNLNGNDI  191 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTT-CCSEEEECTTCCC
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcc-cceeEEecCCCcc
Confidence            9999998865555  899999999999999876555666889999999999998888777766654 34  455555554


Q ss_pred             cCC
Q psy14765        188 SAT  190 (269)
Q Consensus       188 ~~~  190 (269)
                      ...
T Consensus       192 ~~~  194 (606)
T 3t6q_A          192 AGI  194 (606)
T ss_dssp             CEE
T ss_pred             Ccc
Confidence            443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.78  E-value=1.5e-18  Score=138.81  Aligned_cols=134  Identities=22%  Similarity=0.378  Sum_probs=122.2

Q ss_pred             eEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecC
Q psy14765         57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLA  134 (269)
Q Consensus        57 ~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~  134 (269)
                      +.+++++|.++.+|...+     ++|+.|++++|+|+.++ ..|.++++|+.|++++|.|+.++...|  +++|+.|+|+
T Consensus        13 ~~l~~~~~~l~~ip~~~~-----~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP-----RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC-----TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCCCcCCCCCC-----CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence            579999999999998764     57999999999999887 689999999999999999999998877  9999999999


Q ss_pred             CCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCcccccee
Q psy14765        135 HNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSI  198 (269)
Q Consensus       135 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~~  198 (269)
                      +|+|+++++..|.++++|+.|+|++|+|+.+++..|..++. +..+.+++|++. +.|.+.|+.
T Consensus        87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~~~-C~c~l~~l~  148 (193)
T 2wfh_A           87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA-LSHLAIGANPLY-CDCNMQWLS  148 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT-CCEEECCSSCEE-CSGGGHHHH
T ss_pred             CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcc-ccEEEeCCCCee-cCCcCHHHH
Confidence            99999999999999999999999999999999999988876 799999999955 477788874

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.77  E-value=2.2e-18  Score=160.25  Aligned_cols=175  Identities=18%  Similarity=0.217  Sum_probs=151.1

Q ss_pred             CCcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765         34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD  110 (269)
Q Consensus        34 ~~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  110 (269)
                      ..++++++++.++.+++..+   ++|+.|++++|.++.+++..|.  ++++|++|++++|+++.+.|..|.++++|++|+
T Consensus        33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH--GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhh--chhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            35799999999999887544   7999999999999999999998  899999999999999999999999999999999


Q ss_pred             cCCCCCCCcCCccC--ccccceeecCCCcccccC-ccccCCCCCCCEEEccCCcceeeCcccccccccC---CCeeEEee
Q psy14765        111 LSDNLLSTVPSLIY--IPYLKSINLAHNPINQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLP---GSNLTLDC  184 (269)
Q Consensus       111 L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~---l~~l~l~~  184 (269)
                      +++|.++.+++..+  +++|++|++++|.+.++. |..|+++++|++|++++|.++++++..+..+...   +..+.++.
T Consensus       111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~  190 (606)
T 3vq2_A          111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL  190 (606)
T ss_dssp             CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred             ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence            99999999886556  999999999999999754 7779999999999999999999998888776642   34788889


Q ss_pred             ccccCCCccccceecccccccccccCccc
Q psy14765        185 RVQSATPCRIMWSINRKIYDHVNWNSNKI  213 (269)
Q Consensus       185 n~~~~~~~~~~~~~~~~~l~~l~~~~n~~  213 (269)
                      |.+...++......   .++.+++.+|.+
T Consensus       191 n~l~~~~~~~~~~~---~L~~L~L~~n~~  216 (606)
T 3vq2_A          191 NPIDFIQDQAFQGI---KLHELTLRGNFN  216 (606)
T ss_dssp             CCCCEECTTTTTTC---EEEEEEEESCCS
T ss_pred             CCcceeCcccccCc---eeeeeeccCCcc
Confidence            98887776554433   377777777765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=6.9e-18  Score=136.21  Aligned_cols=130  Identities=20%  Similarity=0.364  Sum_probs=120.7

Q ss_pred             CCcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765         34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD  110 (269)
Q Consensus        34 ~~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  110 (269)
                      .-+.++.++++++.+|....   ++|+.|++++|+++.+++..|.  ++++|++|++++|+|+.+++..|..+++|++|+
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN--KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcC--CCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            35799999999999988654   7999999999999999999988  899999999999999999998899999999999


Q ss_pred             cCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceee
Q psy14765        111 LSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI  165 (269)
Q Consensus       111 L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~  165 (269)
                      +++|+++.++...+  +++|+.|++++|+++++++..|..+++|+.|++++|.+.+.
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  163 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  163 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC
Confidence            99999999998876  99999999999999999888899999999999999988754

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.77  E-value=2.3e-18  Score=148.79  Aligned_cols=192  Identities=15%  Similarity=0.233  Sum_probs=143.2

Q ss_pred             CCcEEEcCCCCCcccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhc---------C
Q psy14765         34 GKRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR---------G  102 (269)
Q Consensus        34 ~~~~v~c~~~~l~~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~---------~  102 (269)
                      .-+.++.++|.++.+|..+.  ++|+.|++++|.++.+|... .  ++++|++|++++|++.+..|..+.         +
T Consensus       105 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l-~--~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~  181 (328)
T 4fcg_A          105 HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASI-A--SLNRLRELSIRACPELTELPEPLASTDASGEHQG  181 (328)
T ss_dssp             TCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGG-G--GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred             CCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHH-h--cCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence            35788888888888887665  78889999999888887654 4  788899999988766655555443         4


Q ss_pred             CCCCCEEEcCCCCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeE
Q psy14765        103 VTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLT  181 (269)
Q Consensus       103 l~~L~~L~L~~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~  181 (269)
                      +++|++|++++|.++.+|.... +++|+.|++++|+++++++ .++.+++|+.|++++|.+.+..+..+..++. ++.+.
T Consensus       182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~-L~~L~  259 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAP-LKRLI  259 (328)
T ss_dssp             STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCC-CCEEE
T ss_pred             CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCch-hhccCCCCCEEECcCCcchhhhHHHhcCCCC-CCEEE
Confidence            8888999999998888887766 8889999999998888755 4888888999999988888777777777776 78888


Q ss_pred             Eeecc-ccCCCccccceecccccccccccCccc-cccccceeecCCCeeeeeec
Q psy14765        182 LDCRV-QSATPCRIMWSINRKIYDHVNWNSNKI-NIKEETVLSKDNSYLSVFSG  233 (269)
Q Consensus       182 l~~n~-~~~~~~~~~~~~~~~~l~~l~~~~n~~-~~~~~~~~~~~~~~~~~~~~  233 (269)
                      ++.|. .+..|..+   .....++.+++.+|.+ +..|..+..........+..
T Consensus       260 L~~n~~~~~~p~~~---~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          260 LKDCSNLLTLPLDI---HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             CTTCTTCCBCCTTG---GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             CCCCCchhhcchhh---hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence            87654 44444333   3334477888877654 66667777777666555543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.77  E-value=4.6e-18  Score=156.86  Aligned_cols=178  Identities=16%  Similarity=0.220  Sum_probs=147.1

Q ss_pred             CCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCC
Q psy14765         34 GKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD  113 (269)
Q Consensus        34 ~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~  113 (269)
                      .-+.+++++++++.+|..++++++.|++++|.|+.+| .     .+++|+.|++++|+|++++.  |.+  +|+.|++++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip-~-----~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP-E-----LPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC-C-----CCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc-c-----ccCCCCEEEccCCCCCCcch--hhc--CCCEEECCC
Confidence            4789999999999999999999999999999999988 2     46899999999999999865  554  899999999


Q ss_pred             CCCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCcc
Q psy14765        114 NLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCR  193 (269)
Q Consensus       114 N~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~  193 (269)
                      |.|+.+|.  .+++|+.|++++|.|++++.    .+++|+.|+|++|+|+++|.  |.   ..++.+.+++|.+...|. 
T Consensus       130 N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~---~~L~~L~Ls~N~L~~lp~-  197 (571)
T 3cvr_A          130 NQLTMLPE--LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP---ESLEALDVSTNLLESLPA-  197 (571)
T ss_dssp             SCCSCCCC--CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC---TTCCEEECCSSCCSSCCC-
T ss_pred             CcCCCCCC--cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh---CCCCEEECcCCCCCchhh-
Confidence            99999888  58899999999999999865    56889999999999999876  44   347899999998887775 


Q ss_pred             ccceeccccc-------ccccccCccccccccceeecCCCeeeeeeccceee
Q psy14765        194 IMWSINRKIY-------DHVNWNSNKINIKEETVLSKDNSYLSVFSGGVDLA  238 (269)
Q Consensus       194 ~~~~~~~~~l-------~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~  238 (269)
                      +..     .+       +.+++.+|.+...+..+....+...+.+..+.+.+
T Consensus       198 ~~~-----~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          198 VPV-----RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             CC-------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             HHH-----hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence            322     25       78888899888777777777777767666665544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.76  E-value=2.9e-18  Score=137.02  Aligned_cols=135  Identities=17%  Similarity=0.330  Sum_probs=121.4

Q ss_pred             eEEEeecCCccccccccccccCCCcccEEEcccccccccchh-hhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeec
Q psy14765         57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR-AFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINL  133 (269)
Q Consensus        57 ~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L  133 (269)
                      +.+++++|.++.+|...+     .+|+.|++++|+|+.+++. .|..+++|++|++++|+|+.+++..|  +++|+.|+|
T Consensus        11 ~~l~~s~~~l~~ip~~~~-----~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP-----LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC-----TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCCCcCcCccCCC-----CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence            679999999999998765     3899999999999999875 58999999999999999999876666  999999999


Q ss_pred             CCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCcccccee
Q psy14765        134 AHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSI  198 (269)
Q Consensus       134 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~~  198 (269)
                      ++|+|+++++..|+++++|++|+|++|++++++++.|..++. ++.+.+++|.+.+ .+.+.|+.
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~c-~c~l~~~~  148 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS-LTSLNLASNPFNC-NCHLAWFA  148 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTT-CCEEECTTCCBCC-SGGGHHHH
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCC-CCEEEeCCCCccC-cCcchHHH
Confidence            999999999999999999999999999999999999988876 7999999999664 56677763

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.76  E-value=1.5e-17  Score=142.45  Aligned_cols=164  Identities=21%  Similarity=0.271  Sum_probs=107.9

Q ss_pred             CcEEEcCCCCCcccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcC
Q psy14765         35 KRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS  112 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~  112 (269)
                      -+.++++++.++.+|. +.  ++++.|++++|.++.+++  +.  .+++|++|++++|+++.++  .+..+++|++|+++
T Consensus        43 L~~L~l~~~~i~~l~~-~~~l~~L~~L~L~~n~i~~~~~--~~--~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           43 ITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLAP--LK--NLTKITELELSGNPLKNVS--AIAGLQSIKTLDLT  115 (308)
T ss_dssp             CCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GT--TCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECT
T ss_pred             cCEEEeeCCCccCchh-hhccCCCCEEEccCCcCCCChh--Hc--cCCCCCEEEccCCcCCCch--hhcCCCCCCEEECC
Confidence            4677777777777663 22  677777777777777766  44  6777777777777777764  46677777777777


Q ss_pred             CCCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCC
Q psy14765        113 DNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATP  191 (269)
Q Consensus       113 ~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~  191 (269)
                      +|.++.++. .. +++|+.|++++|.++++++  ++.+++|+.|++++|.++++++  +..++. ++.+.+++|.+...+
T Consensus       116 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~-L~~L~l~~n~l~~~~  189 (308)
T 1h6u_A          116 STQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSK-LTTLKADDNKISDIS  189 (308)
T ss_dssp             TSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTT-CCEEECCSSCCCCCG
T ss_pred             CCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCC-CCEEECCCCccCcCh
Confidence            777776654 23 7777777777777776654  6666777777777777776654  455544 566667666665554


Q ss_pred             ccccceecccccccccccCccccc
Q psy14765        192 CRIMWSINRKIYDHVNWNSNKINI  215 (269)
Q Consensus       192 ~~~~~~~~~~~l~~l~~~~n~~~~  215 (269)
                      +    +.....++.+++.+|.+..
T Consensus       190 ~----l~~l~~L~~L~L~~N~l~~  209 (308)
T 1h6u_A          190 P----LASLPNLIEVHLKNNQISD  209 (308)
T ss_dssp             G----GGGCTTCCEEECTTSCCCB
T ss_pred             h----hcCCCCCCEEEccCCccCc
Confidence            3    2223336666666666543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.75  E-value=1.2e-18  Score=149.41  Aligned_cols=170  Identities=14%  Similarity=0.139  Sum_probs=76.2

Q ss_pred             cEEEcCCCCCc-ccCCCC----CCCceEEEeecCCccccccccccccCC-----CcccEEEcccccccccchhhhcCCCC
Q psy14765         36 RTVECIDRNFY-TIPEGI----DLDTQVLDLSSNNINVLQKEIFLQMGI-----TNIQKLYLRKCKLEFVDDRAFRGVTN  105 (269)
Q Consensus        36 ~~v~c~~~~l~-~ip~~~----~~~l~~L~l~~n~l~~i~~~~f~~~~l-----~~L~~L~L~~N~i~~~~~~~~~~l~~  105 (269)
                      +.++.+++.++ .+|..+    .++++.|++++|.++.+ +..|.  ++     ++|++|++++|+|+++++..|..+++
T Consensus        98 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~--~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~  174 (312)
T 1wwl_A           98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLA--ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA  174 (312)
T ss_dssp             CEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHH--HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred             cEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHH--HHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence            44555555554 244432    14555555555555544 22232  23     45555555555555555455555555


Q ss_pred             CCEEEcCCCCCCC---cCCcc--C-ccccceeecCCCccccc---CccccCCCCCCCEEEccCCcceeeCc-cccccccc
Q psy14765        106 MDELDLSDNLLST---VPSLI--Y-IPYLKSINLAHNPINQI---SSYSFQSTPGIRYIDMSNCQIHTIYS-EAFYVMVL  175 (269)
Q Consensus       106 L~~L~L~~N~l~~---l~~~~--~-l~~L~~L~L~~N~i~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~  175 (269)
                      |++|++++|++..   ++...  . +++|+.|++++|+++++   ....+..+++|+.|++++|++++.++ ..+..+..
T Consensus       175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  254 (312)
T 1wwl_A          175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ  254 (312)
T ss_dssp             CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred             CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence            5555555555432   11111  1 45555555555555422   12223344455555555555554432 22222222


Q ss_pred             CCCeeEEeeccccCCCccccceecccccccccccCcccc
Q psy14765        176 PGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKIN  214 (269)
Q Consensus       176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~  214 (269)
                       ++.+.++.|.+...|..+.     ..++.+++++|++.
T Consensus       255 -L~~L~Ls~N~l~~ip~~~~-----~~L~~L~Ls~N~l~  287 (312)
T 1wwl_A          255 -LNSLNLSFTGLKQVPKGLP-----AKLSVLDLSYNRLD  287 (312)
T ss_dssp             -CCEEECTTSCCSSCCSSCC-----SEEEEEECCSSCCC
T ss_pred             -CCEEECCCCccChhhhhcc-----CCceEEECCCCCCC
Confidence             4555555555544443332     12444455555443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.75  E-value=7.7e-18  Score=155.25  Aligned_cols=171  Identities=19%  Similarity=0.262  Sum_probs=146.2

Q ss_pred             CcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765         35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL  111 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  111 (269)
                      .+.++++++.++.+++..+   ++|+.|++++|.++.+++..|.  ++++|++|++++|+++.+++.+|.++++|++|++
T Consensus        30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccccc--CchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            5789999999999886543   7999999999999999999998  8999999999999999999999999999999999


Q ss_pred             CCCCCCCcCCccC--ccccceeecCCCcccccC-ccccCCCCCCCEEEccCCcceeeCcccccccccCC----CeeEEee
Q psy14765        112 SDNLLSTVPSLIY--IPYLKSINLAHNPINQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPG----SNLTLDC  184 (269)
Q Consensus       112 ~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l----~~l~l~~  184 (269)
                      ++|.++.++...+  +++|++|++++|.++++. |..|+++++|+.|++++|.++++++..+..+.. +    ..+.++.
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~~~~~L~l~~  186 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ-MPLLNLSLDLSL  186 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHT-CTTCCCEEECTT
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhc-cchhhhhcccCC
Confidence            9999999987656  999999999999999864 677999999999999999999999888876654 3    6788888


Q ss_pred             ccccCCCccccceecccccccccccCc
Q psy14765        185 RVQSATPCRIMWSINRKIYDHVNWNSN  211 (269)
Q Consensus       185 n~~~~~~~~~~~~~~~~~l~~l~~~~n  211 (269)
                      |.+...++......   .++.+++.+|
T Consensus       187 n~l~~~~~~~~~~~---~L~~L~l~~n  210 (570)
T 2z63_A          187 NPMNFIQPGAFKEI---RLHKLTLRNN  210 (570)
T ss_dssp             CCCCEECTTTTTTC---EEEEEEEESC
T ss_pred             CCceecCHHHhccC---cceeEecccc
Confidence            88777665544332   2555555544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.75  E-value=1.2e-17  Score=157.33  Aligned_cols=157  Identities=18%  Similarity=0.231  Sum_probs=135.8

Q ss_pred             CCcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765         34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD  110 (269)
Q Consensus        34 ~~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  110 (269)
                      ..+.++++++.++.+|+..+   ++++.|++++|.++.+++..|.  ++++|++|++++|+++.+++.+|.++++|++|+
T Consensus        26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ--KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHH--HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHh--cccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            36899999999999887543   7899999999999999999888  899999999999999999988899999999999


Q ss_pred             cCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccc-cCCCeeEEeeccc
Q psy14765        111 LSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMV-LPGSNLTLDCRVQ  187 (269)
Q Consensus       111 L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~~l~~l~l~~n~~  187 (269)
                      +++|.++.+++..+  +++|++|++++|.++++.+..++++++|++|++++|.++++++..+.... ..++.+.++.|.+
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  183 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI  183 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence            99999999987766  99999999999999999888899999999999999999998877654321 1257788877776


Q ss_pred             cCCCc
Q psy14765        188 SATPC  192 (269)
Q Consensus       188 ~~~~~  192 (269)
                      ...++
T Consensus       184 ~~~~~  188 (680)
T 1ziw_A          184 KEFSP  188 (680)
T ss_dssp             CCBCT
T ss_pred             cccCh
Confidence            65544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.75  E-value=2e-17  Score=158.14  Aligned_cols=126  Identities=16%  Similarity=0.188  Sum_probs=57.4

Q ss_pred             cEEEcCCCCCcc-cCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcC
Q psy14765         36 RTVECIDRNFYT-IPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS  112 (269)
Q Consensus        36 ~~v~c~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~  112 (269)
                      +.+++++|.+.. +|..+.  ++++.|++++|.+....+..|.  .+++|+.|++++|++++..|..|.++++|++|+++
T Consensus       421 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~  498 (768)
T 3rgz_A          421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM--YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS  498 (768)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             CEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc--CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEcc
Confidence            455555555542 333222  4455555555555533333333  44445555555555544444444444455555555


Q ss_pred             CCCCC-CcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcce
Q psy14765        113 DNLLS-TVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIH  163 (269)
Q Consensus       113 ~N~l~-~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~  163 (269)
                      +|+++ .+|..+. +++|+.|++++|++++..|..++.+++|+.|++++|.++
T Consensus       499 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN  551 (768)
T ss_dssp             SSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             CCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence            55444 2333222 444444444444444444444444444444444444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.74  E-value=9.4e-18  Score=132.04  Aligned_cols=136  Identities=16%  Similarity=0.255  Sum_probs=122.1

Q ss_pred             ceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeec
Q psy14765         56 TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINL  133 (269)
Q Consensus        56 l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L  133 (269)
                      .+.+++++++++.+|...+     ++|+.|++++|+++++++..|..+++|++|++++|.++.++...+  +++|+.|++
T Consensus         9 ~~~l~~~~~~l~~~p~~~~-----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIP-----SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCC-----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecCCCCccCCCCCC-----CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence            4679999999999997653     689999999999999999889999999999999999999998876  999999999


Q ss_pred             CCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCccccce
Q psy14765        134 AHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWS  197 (269)
Q Consensus       134 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~  197 (269)
                      ++|+++++++..|..+++|+.|++++|.+++++++.+..++. ++.+.++.|.+.+..+.+.|+
T Consensus        84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L~l~~N~~~~~~~~l~~l  146 (177)
T 2o6r_A           84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTS-LQKIWLHTNPWDCSCPRIDYL  146 (177)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT-CCEEECCSSCBCCCHHHHHHH
T ss_pred             CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcc-cCEEEecCCCeeccCccHHHH
Confidence            999999999888999999999999999999999988887776 799999999977655555554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.74  E-value=1.3e-17  Score=159.51  Aligned_cols=200  Identities=17%  Similarity=0.089  Sum_probs=118.8

Q ss_pred             CcEEEcCCCCCc-ccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765         35 KRTVECIDRNFY-TIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL  111 (269)
Q Consensus        35 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  111 (269)
                      -+.++.++|.+. .+|..+.  ++++.|++++|+++...+..|.  ++++|+.|++++|++++..|..|..+++|+.|++
T Consensus       444 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  521 (768)
T 3rgz_A          444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS--NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL  521 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh--cCCCCCEEEccCCccCCcCChHHhcCCCCCEEEC
Confidence            456777777776 3444433  5677777777777755455555  6677777777777777666666666777777777


Q ss_pred             CCCCCC-CcCCccC-ccccceeecCCCcccccCcc---------------------------------------------
Q psy14765        112 SDNLLS-TVPSLIY-IPYLKSINLAHNPINQISSY---------------------------------------------  144 (269)
Q Consensus       112 ~~N~l~-~l~~~~~-l~~L~~L~L~~N~i~~~~~~---------------------------------------------  144 (269)
                      ++|.++ .+|.... +++|+.|++++|++++..|.                                             
T Consensus       522 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  601 (768)
T 3rgz_A          522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS  601 (768)
T ss_dssp             CSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCG
T ss_pred             CCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccc
Confidence            777766 4454444 66666666666666532221                                             


Q ss_pred             -------------------------ccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeecccc-CCCcccccee
Q psy14765        145 -------------------------SFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQS-ATPCRIMWSI  198 (269)
Q Consensus       145 -------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~-~~~~~~~~~~  198 (269)
                                               .++.+++|+.|+|++|++++..+..+..++. ++.+.+++|.+. .+|..+..+.
T Consensus       602 ~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~-L~~L~Ls~N~l~g~ip~~l~~L~  680 (768)
T 3rgz_A          602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY-LFILNLGHNDISGSIPDEVGDLR  680 (768)
T ss_dssp             GGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTT-CCEEECCSSCCCSCCCGGGGGCT
T ss_pred             hhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcccc-CCEEeCcCCccCCCCChHHhCCC
Confidence                                     2233455666677777666665666666655 566666666665 3333333322


Q ss_pred             cccccccccccCcccc-ccccceeecCCCeeeeeeccceeeee
Q psy14765        199 NRKIYDHVNWNSNKIN-IKEETVLSKDNSYLSVFSGGVDLAAA  240 (269)
Q Consensus       199 ~~~~l~~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~n~~~~~  240 (269)
                         .++.+++++|++. .+|..+..........++.+++.|.-
T Consensus       681 ---~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i  720 (768)
T 3rgz_A          681 ---GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI  720 (768)
T ss_dssp             ---TCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEEC
T ss_pred             ---CCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccC
Confidence               2666666666663 45555555555555555555555543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.74  E-value=4.6e-18  Score=145.82  Aligned_cols=172  Identities=13%  Similarity=0.049  Sum_probs=139.8

Q ss_pred             CCcEEEcCCCCCcccCCCC-------CCCceEEEeecCCccccccccccccCCCcccEEEcccccccccc--hhhh--cC
Q psy14765         34 GKRTVECIDRNFYTIPEGI-------DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD--DRAF--RG  102 (269)
Q Consensus        34 ~~~~v~c~~~~l~~ip~~~-------~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~--~~~~--~~  102 (269)
                      .-+.++.++|.++.+|..+       .++++.|++++|+++.+++..|.  ++++|+.|++++|++.+..  +..+  ..
T Consensus       122 ~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  199 (312)
T 1wwl_A          122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR--VFPALSTLDLSDNPELGERGLISALCPLK  199 (312)
T ss_dssp             CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC--CCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred             CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc--cCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence            3689999999999886533       27999999999999999988888  8999999999999987641  2233  88


Q ss_pred             CCCCCEEEcCCCCCCCcC---CccC--ccccceeecCCCcccccCc-cccCCCCCCCEEEccCCcceeeCcccccccccC
Q psy14765        103 VTNMDELDLSDNLLSTVP---SLIY--IPYLKSINLAHNPINQISS-YSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLP  176 (269)
Q Consensus       103 l~~L~~L~L~~N~l~~l~---~~~~--l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~  176 (269)
                      +++|++|++++|.++.++   ...+  +++|+.|++++|++++..+ ..+..+++|++|+|++|+++.+|...+    ..
T Consensus       200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~----~~  275 (312)
T 1wwl_A          200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP----AK  275 (312)
T ss_dssp             CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC----SE
T ss_pred             CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc----CC
Confidence            999999999999999554   3443  6899999999999999764 556778999999999999999887665    23


Q ss_pred             CCeeEEeeccccCCCccccceecccccccccccCccccc
Q psy14765        177 GSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINI  215 (269)
Q Consensus       177 l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~  215 (269)
                      ++.+++++|.+...|. +.   ....++.+++.+|.+..
T Consensus       276 L~~L~Ls~N~l~~~p~-~~---~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          276 LSVLDLSYNRLDRNPS-PD---ELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             EEEEECCSSCCCSCCC-TT---TSCEEEEEECTTCTTTC
T ss_pred             ceEEECCCCCCCCChh-Hh---hCCCCCEEeccCCCCCC
Confidence            6889999999988754 33   23348888888887653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.73  E-value=1.3e-17  Score=143.24  Aligned_cols=149  Identities=17%  Similarity=0.217  Sum_probs=98.4

Q ss_pred             CcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhc-CCCCCCEEEcCC
Q psy14765         35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR-GVTNMDELDLSD  113 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~L~~  113 (269)
                      -+.+++++|.++.++....++++.|++++|.++.+++..|.  .+++|+.|++++|+|+.+.+..+. .+++|++|++++
T Consensus       101 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~  178 (317)
T 3o53_A          101 IETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEG--CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (317)
T ss_dssp             CCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTG--GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             cCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhh--ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence            34566666666666555556677777777777777666665  667777777777777776655553 566777777777


Q ss_pred             CCCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeecccc
Q psy14765        114 NLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQS  188 (269)
Q Consensus       114 N~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~  188 (269)
                      |.++.++...++++|+.|++++|+++++++. +..+++|+.|++++|++++++.. +..++. ++.+.+++|.+.
T Consensus       179 N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~-~~~l~~-L~~L~l~~N~~~  250 (317)
T 3o53_A          179 NFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQN-LEHFDLRGNGFH  250 (317)
T ss_dssp             SCCCEEECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTT-CCEEECTTCCCB
T ss_pred             CcCcccccccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhhH-hhcCCC-CCEEEccCCCcc
Confidence            7777665544467777777777777777554 66667777777777777776543 444443 566777776655

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.73  E-value=2.2e-17  Score=143.88  Aligned_cols=179  Identities=15%  Similarity=0.208  Sum_probs=139.8

Q ss_pred             CCcEEEcCCCCCcccCCCCC---CCceEEEeecCCcc-ccccccccccCCCcccE-EEcccccccccchhhhcCCCCCCE
Q psy14765         34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNIN-VLQKEIFLQMGITNIQK-LYLRKCKLEFVDDRAFRGVTNMDE  108 (269)
Q Consensus        34 ~~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~-~i~~~~f~~~~l~~L~~-L~L~~N~i~~~~~~~~~~l~~L~~  108 (269)
                      ..++++.++|+|+.+|++.+   ++|+.|++++|++. .+++.+|.  +++++.. +.+.+|+|+.+++++|..+++|++
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~--~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS--NLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  108 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC--SCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh--cchhhhhhhcccCCcccccCchhhhhcccccc
Confidence            35789999999999998765   79999999999985 68889998  8888765 667789999999999999999999


Q ss_pred             EEcCCCCCCCcCCccC--ccccceeecCC-CcccccCccccCCCC-CCCEEEccCCcceeeCcccccccccCCCeeEEe-
Q psy14765        109 LDLSDNLLSTVPSLIY--IPYLKSINLAH-NPINQISSYSFQSTP-GIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLD-  183 (269)
Q Consensus       109 L~L~~N~l~~l~~~~~--l~~L~~L~L~~-N~i~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~-  183 (269)
                      |++++|+++.++...+  ..++..+++.+ |.+..+++..|..+. .++.|+|++|+|+++++..|....+  ..+.+. 
T Consensus       109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L--~~l~l~~  186 (350)
T 4ay9_X          109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL--DELNLSD  186 (350)
T ss_dssp             EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEE--EEEECTT
T ss_pred             ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccch--hHHhhcc
Confidence            9999999999887766  56677777754 678888777777764 5778888888888888877766543  666664 


Q ss_pred             eccccCCCccccceecccccccccccCcccccccc
Q psy14765        184 CRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEE  218 (269)
Q Consensus       184 ~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~  218 (269)
                      +|.++.++.++...  ...++.+++++|++...+.
T Consensus       187 ~n~l~~i~~~~f~~--l~~L~~LdLs~N~l~~lp~  219 (350)
T 4ay9_X          187 NNNLEELPNDVFHG--ASGPVILDISRTRIHSLPS  219 (350)
T ss_dssp             CTTCCCCCTTTTTT--EECCSEEECTTSCCCCCCS
T ss_pred             CCcccCCCHHHhcc--CcccchhhcCCCCcCccCh
Confidence            67777777654322  2237777777777765444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.73  E-value=1.7e-17  Score=149.06  Aligned_cols=141  Identities=24%  Similarity=0.385  Sum_probs=123.8

Q ss_pred             CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--cccccee
Q psy14765         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSI  131 (269)
Q Consensus        54 ~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L  131 (269)
                      ++++.|++++|.++.+.+..|.  .+++|+.|++++|+++++++..|.++++|+.|++++|.++.+++..+  +++|+.|
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  352 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFS--HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL  352 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred             cCceEEEecCccccccchhhcc--cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEE
Confidence            4789999999999988888887  88999999999999999988889999999999999999998876666  8999999


Q ss_pred             ecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCccccce
Q psy14765        132 NLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWS  197 (269)
Q Consensus       132 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~  197 (269)
                      ++++|+++++.+..|..+++|++|++++|++++++++.|..++. ++.+.+++|.+.+..+.+.|+
T Consensus       353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~N~l~~~~~~~~~l  417 (455)
T 3v47_A          353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTS-LQKIWLHTNPWDCSCPRIDYL  417 (455)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT-CCEEECCSSCBCCCTTTTHHH
T ss_pred             ECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCc-ccEEEccCCCcccCCCcchHH
Confidence            99999999998888999999999999999999999888888776 789999999987766666665

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.72  E-value=3.5e-17  Score=153.37  Aligned_cols=198  Identities=16%  Similarity=0.161  Sum_probs=116.7

Q ss_pred             CcEEEcCCCCCcccCCCCC----CCceEEEeecCCcccccccccc-----ccCCCcccEEEcccccccccchhhhcCCCC
Q psy14765         35 KRTVECIDRNFYTIPEGID----LDTQVLDLSSNNINVLQKEIFL-----QMGITNIQKLYLRKCKLEFVDDRAFRGVTN  105 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~----~~l~~L~l~~n~l~~i~~~~f~-----~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~  105 (269)
                      -+.++.++|.++.+|..+.    ++++.|++++|.++...+..|.     .+.+++|+.|++++|+|+.+++..+..+++
T Consensus       379 L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~  458 (636)
T 4eco_A          379 VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP  458 (636)
T ss_dssp             CCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCC
T ss_pred             CcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCC
Confidence            4556666666666665443    1566666666666543333221     002456777777777777776666666777


Q ss_pred             CCEEEcCCCCCCCcCCccC-cc--------ccceeecCCCcccccCcccc-CCCCCCCEEEccCCcceeeCccccccccc
Q psy14765        106 MDELDLSDNLLSTVPSLIY-IP--------YLKSINLAHNPINQISSYSF-QSTPGIRYIDMSNCQIHTIYSEAFYVMVL  175 (269)
Q Consensus       106 L~~L~L~~N~l~~l~~~~~-l~--------~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  175 (269)
                      |+.|++++|.++.+|...+ ..        +|+.|++++|+++.++...+ ..+++|+.|+|++|+++++|.. +..++.
T Consensus       459 L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~  537 (636)
T 4eco_A          459 LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ-PLNSST  537 (636)
T ss_dssp             CSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCG-GGGCSS
T ss_pred             CCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChh-hhcCCC
Confidence            7777777777777776666 22        77777777777776654322 2677777777777777775543 334443


Q ss_pred             CCCeeEEee------cc-ccCCCccccceecccccccccccCccccccccceeecCCCeeeeeeccceeee
Q psy14765        176 PGSNLTLDC------RV-QSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVFSGGVDLAA  239 (269)
Q Consensus       176 ~l~~l~l~~------n~-~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~  239 (269)
                       ++.+.++.      |. .+..|..+.   ....++.+++++|.++..+..+.  .....+.+..+.+.+.
T Consensus       538 -L~~L~Ls~N~~ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          538 -LKGFGIRNQRDAQGNRTLREWPEGIT---LCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             -CCEEECCSCBCTTCCBCCCCCCTTGG---GCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             -CCEEECCCCcccccCcccccChHHHh---cCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCccc
Confidence             56777743      22 233333332   23347777777777765555544  3444455555544443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.72  E-value=1.3e-17  Score=151.65  Aligned_cols=176  Identities=13%  Similarity=0.114  Sum_probs=92.8

Q ss_pred             CcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchh-------------
Q psy14765         35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR-------------   98 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~-------------   98 (269)
                      -+.+++++|.++.+++...   ++|+.|++++|.++.+++  |.  ++++|++|++++|.|+++++.             
T Consensus        36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~--~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l  111 (487)
T 3oja_A           36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE--SLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI  111 (487)
T ss_dssp             CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CT--TCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred             ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cc--cCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence            5678888888887764322   678888888888886665  55  677888888877777766532             


Q ss_pred             ---hhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccC-CCCCCCEEEccCCcceeeCcccccc
Q psy14765         99 ---AFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQ-STPGIRYIDMSNCQIHTIYSEAFYV  172 (269)
Q Consensus        99 ---~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~  172 (269)
                         ....+++|+.|++++|.++.+++..+  +++|+.|++++|.++++.+..+. .+++|+.|+|++|.++++++..  .
T Consensus       112 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~--~  189 (487)
T 3oja_A          112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV--V  189 (487)
T ss_dssp             CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC--C
T ss_pred             CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc--c
Confidence               00112334444444444444433222  44555555555555544443333 3445555555555555443222  1


Q ss_pred             cccCCCeeEEeeccccCCCccccceecccccccccccCccccccccce
Q psy14765        173 MVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETV  220 (269)
Q Consensus       173 l~~~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~  220 (269)
                      ++. +..+++++|.+...++.+..   ...+..+++++|.+...+..+
T Consensus       190 l~~-L~~L~Ls~N~l~~~~~~~~~---l~~L~~L~Ls~N~l~~lp~~l  233 (487)
T 3oja_A          190 FAK-LKTLDLSSNKLAFMGPEFQS---AAGVTWISLRNNKLVLIEKAL  233 (487)
T ss_dssp             CTT-CCEEECCSSCCCEECGGGGG---GTTCSEEECTTSCCCEECTTC
T ss_pred             CCC-CCEEECCCCCCCCCCHhHcC---CCCccEEEecCCcCcccchhh
Confidence            222 45555555555544443221   222455555555554333333

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.72  E-value=4.4e-17  Score=139.54  Aligned_cols=165  Identities=15%  Similarity=0.206  Sum_probs=138.1

Q ss_pred             CCcEEEcCCCCCcccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765         34 GKRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL  111 (269)
Q Consensus        34 ~~~~v~c~~~~l~~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  111 (269)
                      .-+.++++++.++.++. +.  ++|+.|++++|.++.++  .|.  .+++|+.|++++|+++.+++  +..+++|++|++
T Consensus        64 ~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~--~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l  136 (308)
T 1h6u_A           64 NLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS--AIA--GLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYL  136 (308)
T ss_dssp             TCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG--GGT--TCTTCCEEECTTSCCCCCGG--GTTCTTCCEEEC
T ss_pred             CCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch--hhc--CCCCCCEEECCCCCCCCchh--hcCCCCCCEEEC
Confidence            36899999999999887 33  79999999999999886  355  88999999999999999864  889999999999


Q ss_pred             CCCCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCC
Q psy14765        112 SDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSAT  190 (269)
Q Consensus       112 ~~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~  190 (269)
                      ++|.++.++. .. +++|+.|++++|+++++++  +..+++|+.|++++|+++++++  +..++. ++.+.+++|.+...
T Consensus       137 ~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~-L~~L~L~~N~l~~~  210 (308)
T 1h6u_A          137 DLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPN-LIEVHLKNNQISDV  210 (308)
T ss_dssp             CSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTT-CCEEECTTSCCCBC
T ss_pred             CCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCC-CCEEEccCCccCcc
Confidence            9999998876 33 8999999999999998865  8899999999999999998875  666665 78999999988776


Q ss_pred             CccccceecccccccccccCccccc
Q psy14765        191 PCRIMWSINRKIYDHVNWNSNKINI  215 (269)
Q Consensus       191 ~~~~~~~~~~~~l~~l~~~~n~~~~  215 (269)
                      ++    +.....++.+++.+|.+..
T Consensus       211 ~~----l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          211 SP----LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             GG----GTTCTTCCEEEEEEEEEEC
T ss_pred             cc----ccCCCCCCEEEccCCeeec
Confidence            63    3334457788888887754

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=4.5e-17  Score=138.42  Aligned_cols=165  Identities=17%  Similarity=0.197  Sum_probs=129.6

Q ss_pred             CcEEEcCCCCCcccCCCC-CCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCC
Q psy14765         35 KRTVECIDRNFYTIPEGI-DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD  113 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~-~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~  113 (269)
                      -+.++++++.+..+|..- .++++.|++++|.++.+++  +.  .+++|+.|++++|+++.++.  +..+++|++|++++
T Consensus        48 L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~--~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           48 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LA--NLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEH  121 (291)
T ss_dssp             CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTT
T ss_pred             ccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cc--cCCCCCEEECCCCcCCCChh--hccCCCCCEEECCC
Confidence            578899999988886522 2789999999999998877  55  78899999999999988754  88889999999999


Q ss_pred             CCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCc
Q psy14765        114 NLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPC  192 (269)
Q Consensus       114 N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~  192 (269)
                      |+++.++. .. +++|+.|++++|+++++  ..++.+++|+.|++++|+++++++  +..++. ++.+.+++|.+...+.
T Consensus       122 n~i~~~~~-l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~-L~~L~L~~N~i~~l~~  195 (291)
T 1h6t_A          122 NGISDING-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTK-LQNLYLSKNHISDLRA  195 (291)
T ss_dssp             SCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTT-CCEEECCSSCCCBCGG
T ss_pred             CcCCCChh-hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCc-cCEEECCCCcCCCChh
Confidence            99988743 33 88899999999998887  357888889999999999888865  666665 7888888888777542


Q ss_pred             cccceecccccccccccCccccc
Q psy14765        193 RIMWSINRKIYDHVNWNSNKINI  215 (269)
Q Consensus       193 ~~~~~~~~~~l~~l~~~~n~~~~  215 (269)
                          +.....++.+++.+|.+..
T Consensus       196 ----l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          196 ----LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             ----GTTCTTCSEEEEEEEEEEC
T ss_pred             ----hccCCCCCEEECcCCcccC
Confidence                3334457777777777643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.71  E-value=1.7e-17  Score=142.57  Aligned_cols=168  Identities=16%  Similarity=0.149  Sum_probs=98.1

Q ss_pred             CcEEEcCCCCCcccCC-CCCCCceEEEeecCCccc-------------------cccccccccCCCcccEEEcccccccc
Q psy14765         35 KRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINV-------------------LQKEIFLQMGITNIQKLYLRKCKLEF   94 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~-~~~~~l~~L~l~~n~l~~-------------------i~~~~f~~~~l~~L~~L~L~~N~i~~   94 (269)
                      -+.++.++|.++.+++ .-.++|+.|++++|.++.                   ++..     .+++|+.|++++|+++.
T Consensus        60 L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~-----~~~~L~~L~l~~N~l~~  134 (317)
T 3o53_A           60 LELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS-----RGQGKKNIYLANNKITM  134 (317)
T ss_dssp             CCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEEC-----CCSSCEEEECCSSCCCS
T ss_pred             CCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCcc-----ccCCCCEEECCCCCCCC
Confidence            3556666666654433 111455555555555544                   3333     23556677777777776


Q ss_pred             cchhhhcCCCCCCEEEcCCCCCCCcCCccC---ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCccccc
Q psy14765         95 VDDRAFRGVTNMDELDLSDNLLSTVPSLIY---IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY  171 (269)
Q Consensus        95 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~---l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  171 (269)
                      +++..|..+++|++|++++|.++.++...+   +++|+.|++++|.+++++.  ...+++|+.|++++|+++++++. +.
T Consensus       135 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~  211 (317)
T 3o53_A          135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQ  211 (317)
T ss_dssp             GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GG
T ss_pred             ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhh-hc
Confidence            666666666777777777777765543332   5667777777777766633  22366677777777777776655 44


Q ss_pred             ccccCCCeeEEeeccccCCCccccceecccccccccccCcccc
Q psy14765        172 VMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKIN  214 (269)
Q Consensus       172 ~l~~~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~  214 (269)
                      .++. ++.+.+++|.+...+..+..   ...++.+++.+|.+.
T Consensus       212 ~l~~-L~~L~L~~N~l~~l~~~~~~---l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          212 SAAG-VTWISLRNNKLVLIEKALRF---SQNLEHFDLRGNGFH  250 (317)
T ss_dssp             GGTT-CSEEECTTSCCCEECTTCCC---CTTCCEEECTTCCCB
T ss_pred             ccCc-ccEEECcCCcccchhhHhhc---CCCCCEEEccCCCcc
Confidence            4444 56677777766655543322   223666666666654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.71  E-value=2.3e-17  Score=154.60  Aligned_cols=152  Identities=20%  Similarity=0.262  Sum_probs=98.7

Q ss_pred             CcEEEcCCCCCcccCC--CCC--CCceEEEeecCCcc-ccccccccccCCCcccEEEcccccccccchhhhcCCCC-CCE
Q psy14765         35 KRTVECIDRNFYTIPE--GID--LDTQVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN-MDE  108 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~--~~~--~~l~~L~l~~n~l~-~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~-L~~  108 (269)
                      -+.+++++|.++.+|.  .+.  ++|+.|++++|.++ .+|  .|.  .+++|+.|++++|+++.++. .|..+++ |++
T Consensus       307 L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~--~l~~L~~L~L~~N~l~~lp~-~l~~l~~~L~~  381 (636)
T 4eco_A          307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFG--SEIKLASLNLAYNQITEIPA-NFCGFTEQVEN  381 (636)
T ss_dssp             CCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCE--EEEEESEEECCSSEEEECCT-TSEEECTTCCE
T ss_pred             CCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhC--CCCCCCEEECCCCccccccH-hhhhhcccCcE
Confidence            4667777777777776  333  67777777777777 666  455  66777777777777776543 4677777 777


Q ss_pred             EEcCCCCCCCcCCccC-c--cccceeecCCCcccccCccccC-------CCCCCCEEEccCCcceeeCcccccccccCCC
Q psy14765        109 LDLSDNLLSTVPSLIY-I--PYLKSINLAHNPINQISSYSFQ-------STPGIRYIDMSNCQIHTIYSEAFYVMVLPGS  178 (269)
Q Consensus       109 L~L~~N~l~~l~~~~~-l--~~L~~L~L~~N~i~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~  178 (269)
                      |++++|.++.+|.... .  ++|+.|++++|.+++..|..+.       .+++|+.|++++|++++++...+..++. ++
T Consensus       382 L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~-L~  460 (636)
T 4eco_A          382 LSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP-LS  460 (636)
T ss_dssp             EECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCC-CS
T ss_pred             EEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCC-CC
Confidence            7777777777776444 2  3677777777777666555555       5556666666666666666555544443 45


Q ss_pred             eeEEeeccccCCCc
Q psy14765        179 NLTLDCRVQSATPC  192 (269)
Q Consensus       179 ~l~l~~n~~~~~~~  192 (269)
                      .+.++.|.+...+.
T Consensus       461 ~L~Ls~N~l~~i~~  474 (636)
T 4eco_A          461 SINLMGNMLTEIPK  474 (636)
T ss_dssp             EEECCSSCCSBCCS
T ss_pred             EEECCCCCCCCcCH
Confidence            55555555554443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.71  E-value=2.3e-17  Score=151.54  Aligned_cols=153  Identities=18%  Similarity=0.256  Sum_probs=132.2

Q ss_pred             CCcEEEcCCCCCcccCCCC-C--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765         34 GKRTVECIDRNFYTIPEGI-D--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD  110 (269)
Q Consensus        34 ~~~~v~c~~~~l~~ip~~~-~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  110 (269)
                      .-++++.+++.++.+++.. .  +++++|++++|+++.+++..|.  ++++|++|++++|+++++++..|.++++|++|+
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY--SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcc--ccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            4689999999999986543 3  7999999999999999999998  899999999999999999999999999999999


Q ss_pred             cCCCCCCCc--CCccC-ccccceeecCCCc-ccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeecc
Q psy14765        111 LSDNLLSTV--PSLIY-IPYLKSINLAHNP-INQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRV  186 (269)
Q Consensus       111 L~~N~l~~l--~~~~~-l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~  186 (269)
                      +++|.++.+  +.... +++|+.|++++|. +..+++..|+++++|+.|++++|.+++..+..+..+.. ++.+.++.|.
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~l~~n~  183 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD-IHHLTLHLSE  183 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE-EEEEEEECSB
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc-CceEecccCc
Confidence            999999965  44444 9999999999998 78887778999999999999999999988877776654 5666666665


Q ss_pred             ccC
Q psy14765        187 QSA  189 (269)
Q Consensus       187 ~~~  189 (269)
                      ...
T Consensus       184 ~~~  186 (549)
T 2z81_A          184 SAF  186 (549)
T ss_dssp             STT
T ss_pred             ccc
Confidence            443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.71  E-value=3.9e-17  Score=148.46  Aligned_cols=148  Identities=18%  Similarity=0.223  Sum_probs=90.3

Q ss_pred             cEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhc-CCCCCCEEEcCCC
Q psy14765         36 RTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR-GVTNMDELDLSDN  114 (269)
Q Consensus        36 ~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~L~~N  114 (269)
                      +.+++++|.+..+|...+++++.|++++|.++.+++..|.  ++++|+.|++++|.|+++++..|. .+++|+.|+|++|
T Consensus       102 ~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          102 ETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEG--CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             CEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGG--GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             CEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhc--CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence            4455555555555554455666666666666666665555  566666666666666666555554 5666666666666


Q ss_pred             CCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeecccc
Q psy14765        115 LLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQS  188 (269)
Q Consensus       115 ~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~  188 (269)
                      .++.++...++++|+.|+|++|.++++++. +..+++|+.|+|++|.++++|.. +..++. +..+.+++|.+.
T Consensus       180 ~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~-L~~L~l~~N~l~  250 (487)
T 3oja_A          180 FIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQN-LEHFDLRGNGFH  250 (487)
T ss_dssp             CCCEEECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTT-CCEEECTTCCBC
T ss_pred             ccccccccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchh-hccCCC-CCEEEcCCCCCc
Confidence            666665444466666666666666666554 55666666666666666666543 333333 466666666554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.71  E-value=1.2e-16  Score=147.31  Aligned_cols=156  Identities=12%  Similarity=0.208  Sum_probs=134.5

Q ss_pred             CCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCC
Q psy14765         34 GKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD  113 (269)
Q Consensus        34 ~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~  113 (269)
                      .-+.+++++|.++.+| ..+++|+.|++++|.|+.+|.  |.  +  +|+.|++++|+|+++++    .+++|+.|++++
T Consensus        81 ~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~--l~--~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~  149 (571)
T 3cvr_A           81 QITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPE--LP--A--SLKHLDVDNNQLTMLPE----LPALLEYINADN  149 (571)
T ss_dssp             TCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCC--CC--T--TCCEEECCSSCCSCCCC----CCTTCCEEECCS
T ss_pred             CCCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcch--hh--c--CCCEEECCCCcCCCCCC----cCccccEEeCCC
Confidence            3689999999999999 777999999999999999988  53  3  89999999999999876    678999999999


Q ss_pred             CCCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCC-------CeeEEeecc
Q psy14765        114 NLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPG-------SNLTLDCRV  186 (269)
Q Consensus       114 N~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l-------~~l~l~~n~  186 (269)
                      |.|+.+|.  .+++|+.|+|++|++++++.  |.  ++|+.|+|++|+|+.+|.  +..   .+       ..+.+++|.
T Consensus       150 N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~--~~~---~L~~~~~~L~~L~Ls~N~  218 (571)
T 3cvr_A          150 NQLTMLPE--LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA--VPV---RNHHSEETEIFFRCRENR  218 (571)
T ss_dssp             SCCSCCCC--CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC--CC-----------CCEEEECCSSC
T ss_pred             CccCcCCC--cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh--HHH---hhhcccccceEEecCCCc
Confidence            99999887  47899999999999999865  65  899999999999999887  433   35       889999999


Q ss_pred             ccCCCccccceecccccccccccCcccc
Q psy14765        187 QSATPCRIMWSINRKIYDHVNWNSNKIN  214 (269)
Q Consensus       187 ~~~~~~~~~~~~~~~~l~~l~~~~n~~~  214 (269)
                      +..+|..+..+   ..+..+++.+|.+.
T Consensus       219 l~~lp~~l~~l---~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          219 ITHIPENILSL---DPTCTIILEDNPLS  243 (571)
T ss_dssp             CCCCCGGGGGS---CTTEEEECCSSSCC
T ss_pred             ceecCHHHhcC---CCCCEEEeeCCcCC
Confidence            99988766553   34888999999884

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.71  E-value=1.9e-17  Score=141.82  Aligned_cols=173  Identities=13%  Similarity=0.100  Sum_probs=91.0

Q ss_pred             CcEEEcCCCCCcc-cCCCC----CCCceEEEeecCCccccc----cccccccCCCcccEEEcccccccccchhhhcCCCC
Q psy14765         35 KRTVECIDRNFYT-IPEGI----DLDTQVLDLSSNNINVLQ----KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN  105 (269)
Q Consensus        35 ~~~v~c~~~~l~~-ip~~~----~~~l~~L~l~~n~l~~i~----~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~  105 (269)
                      -+.++.+++.+.. +|..+    .++++.|++++|.++...    ...+.  .+++|++|++++|+|+.+++..|..+++
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW--LKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT--BCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh--hccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            3455556666553 33322    245666666666665321    12222  4566666666666666666666666666


Q ss_pred             CCEEEcCCCCCCC---cCCcc--C-ccccceeecCCCcccccCcc---ccCCCCCCCEEEccCCcceeeCcccccccc--
Q psy14765        106 MDELDLSDNLLST---VPSLI--Y-IPYLKSINLAHNPINQISSY---SFQSTPGIRYIDMSNCQIHTIYSEAFYVMV--  174 (269)
Q Consensus       106 L~~L~L~~N~l~~---l~~~~--~-l~~L~~L~L~~N~i~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~--  174 (269)
                      |++|++++|++..   ++...  . +++|++|++++|+++.++..   .++.+++|++|+|++|+++++.+..+..+.  
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            6666666666542   32222  1 55666666666666544321   234556666666666666665333333331  


Q ss_pred             cCCCeeEEeeccccCCCccccceecccccccccccCcccc
Q psy14765        175 LPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKIN  214 (269)
Q Consensus       175 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~  214 (269)
                      ..++.+.+++|.+...|..+.     ..++.+++++|++.
T Consensus       251 ~~L~~L~Ls~N~l~~lp~~~~-----~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          251 SALNSLNLSFAGLEQVPKGLP-----AKLRVLDLSSNRLN  285 (310)
T ss_dssp             TTCCCEECCSSCCCSCCSCCC-----SCCSCEECCSCCCC
T ss_pred             CcCCEEECCCCCCCchhhhhc-----CCCCEEECCCCcCC
Confidence            225666666666665544332     22555666666554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=7.5e-17  Score=129.13  Aligned_cols=143  Identities=16%  Similarity=0.228  Sum_probs=74.5

Q ss_pred             CcEEEcCCCCCcccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcC
Q psy14765         35 KRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS  112 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~  112 (269)
                      -+.++++++.++.+| ++.  ++++.|++++|.++.++  .+.  .+++|++|++++|+++...+..|..+++|++|+++
T Consensus        46 L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           46 LTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             CCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGT--TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             ccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhh--cCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            345555555555555 222  55566666666555443  233  45556666666666655444455555566666666


Q ss_pred             CCCCCC-cCCccC-ccccceeecCCCc-ccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccc
Q psy14765        113 DNLLST-VPSLIY-IPYLKSINLAHNP-INQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQ  187 (269)
Q Consensus       113 ~N~l~~-l~~~~~-l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~  187 (269)
                      +|.++. .+.... +++|+.|++++|+ ++.++  .+..+++|+.|++++|.++.++  .+..++. ++.+.+++|.+
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~-L~~L~l~~N~i  193 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPK-LNQLYAFSQTI  193 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSS-CCEEEECBC--
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCC-CCEEEeeCccc
Confidence            665553 222222 5556666666665 55543  2555555666666666555544  3344433 45555555543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.70  E-value=3.2e-16  Score=144.68  Aligned_cols=170  Identities=14%  Similarity=0.128  Sum_probs=87.1

Q ss_pred             cEEEcCCCCCcccCC-CCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccch--hhhcCCCCCCEEEcC
Q psy14765         36 RTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD--RAFRGVTNMDELDLS  112 (269)
Q Consensus        36 ~~v~c~~~~l~~ip~-~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~--~~~~~l~~L~~L~L~  112 (269)
                      +.++.+++.+..++. .-.++++.|++++|.++.+.+..|.  ++++|+.|++++|+++++++  ..|.++++|+.|+++
T Consensus       334 ~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~  411 (562)
T 3a79_B          334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCS--TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS  411 (562)
T ss_dssp             SEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC--SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred             eEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhc--ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence            344555555444332 2235566666666666654444444  55666666666666665442  345556666666666


Q ss_pred             CCCCCC-cCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccC
Q psy14765        113 DNLLST-VPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSA  189 (269)
Q Consensus       113 ~N~l~~-l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~  189 (269)
                      +|.++. +|...+  +++|+.|++++|++++..+..+.  ++|+.|++++|+++.+|+..+ .++. ++.+++++|.+..
T Consensus       412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~-~l~~-L~~L~L~~N~l~~  487 (562)
T 3a79_B          412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVT-HLQA-LQELNVASNQLKS  487 (562)
T ss_dssp             TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTT-SSCC-CSEEECCSSCCCC
T ss_pred             CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhc-CCCC-CCEEECCCCCCCC
Confidence            666654 555544  55555555555555543333222  355555555555555555444 3333 4555555555555


Q ss_pred             CCccccceecccccccccccCccc
Q psy14765        190 TPCRIMWSINRKIYDHVNWNSNKI  213 (269)
Q Consensus       190 ~~~~~~~~~~~~~l~~l~~~~n~~  213 (269)
                      .+...  +.....++.+++.+|.+
T Consensus       488 l~~~~--~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          488 VPDGV--FDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             CCTTS--TTTCTTCCCEECCSCCB
T ss_pred             CCHHH--HhcCCCCCEEEecCCCc
Confidence            44431  11222244455555544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.70  E-value=2.3e-16  Score=144.08  Aligned_cols=172  Identities=15%  Similarity=0.117  Sum_probs=115.9

Q ss_pred             CcEEEcCCCCCcccCC-CCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccc--hhhhcCCCCCCEEEc
Q psy14765         35 KRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD--DRAFRGVTNMDELDL  111 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~-~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~--~~~~~~l~~L~~L~L  111 (269)
                      -+.++++++++..++. .-.++++.|++++|.++...+..|.  .+++|+.|++++|+|++++  +..|..+++|++|++
T Consensus       304 L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L  381 (520)
T 2z7x_B          304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG--HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI  381 (520)
T ss_dssp             CSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC--CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred             eeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhc--cCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence            3455555665555442 3346788888888888765555555  7788888888888887654  356777888888888


Q ss_pred             CCCCCCC-cCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeecccc
Q psy14765        112 SDNLLST-VPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQS  188 (269)
Q Consensus       112 ~~N~l~~-l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~  188 (269)
                      ++|.++. +|...+  +++|+.|++++|++++..+..+.  ++|+.|++++|+++.+|...+ .++. ++.+.+++|.+.
T Consensus       382 s~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~-~l~~-L~~L~L~~N~l~  457 (520)
T 2z7x_B          382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVV-KLEA-LQELNVASNQLK  457 (520)
T ss_dssp             CSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGG-GCTT-CCEEECCSSCCC
T ss_pred             CCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhh-cCCC-CCEEECCCCcCC
Confidence            8888876 776655  77788888888877665554443  577788888888877776555 4444 677777777777


Q ss_pred             CCCccccceecccccccccccCcccc
Q psy14765        189 ATPCRIMWSINRKIYDHVNWNSNKIN  214 (269)
Q Consensus       189 ~~~~~~~~~~~~~~l~~l~~~~n~~~  214 (269)
                      ..+..  .+.....++.+++.+|.+.
T Consensus       458 ~l~~~--~~~~l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          458 SVPDG--IFDRLTSLQKIWLHTNPWD  481 (520)
T ss_dssp             CCCTT--TTTTCTTCCEEECCSSCBC
T ss_pred             ccCHH--HhccCCcccEEECcCCCCc
Confidence            66654  1222333666777777664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.70  E-value=6.8e-17  Score=150.61  Aligned_cols=127  Identities=17%  Similarity=0.244  Sum_probs=92.1

Q ss_pred             CCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhc
Q psy14765         22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR  101 (269)
Q Consensus        22 ~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~  101 (269)
                      +||..|.|... +.+.++|++++++.+|..++++++.|++++|.|+.++.      .+++|++|++++|+|+.++.    
T Consensus        30 ~~~~~~~c~~~-~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~------~l~~L~~L~Ls~N~l~~lp~----   98 (622)
T 3g06_A           30 VVQKMRACLNN-GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTSLPV----   98 (622)
T ss_dssp             HHHHHHHHHHH-CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC------CCTTCCEEEECSCCCSCCCC----
T ss_pred             cCcccccccCC-CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC------cCCCCCEEEcCCCcCCcCCC----
Confidence            56777888743 36799999999999999999999999999999998887      24789999999999988865    


Q ss_pred             CCCCCCEEEcCCCCCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCcceee
Q psy14765        102 GVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI  165 (269)
Q Consensus       102 ~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~  165 (269)
                      .+++|++|++++|.++.+|.  .+++|+.|++++|+++.++..    +++|++|++++|.++++
T Consensus        99 ~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l  156 (622)
T 3g06_A           99 LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASL  156 (622)
T ss_dssp             CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCC
T ss_pred             CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCc
Confidence            56788888888888887765  244555555555555554321    24444444444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.69  E-value=9.3e-17  Score=125.16  Aligned_cols=133  Identities=20%  Similarity=0.256  Sum_probs=65.7

Q ss_pred             CCCCCceEEEeecCCcc--ccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCC-cCCccC-cc
Q psy14765         51 GIDLDTQVLDLSSNNIN--VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST-VPSLIY-IP  126 (269)
Q Consensus        51 ~~~~~l~~L~l~~n~l~--~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~-l~  126 (269)
                      ..+++++.|++++|.++  .++.. |.  .+++|+.|++++|.|+.+  ..|..+++|++|++++|.++. +|.... ++
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~-~~--~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   95 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGL-TA--EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP   95 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSC-CG--GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred             CCcccCCEEECCCCCCChhhHHHH-HH--hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence            33345555555555555  44333 33  455555555555555554  345555555555555555554 222222 55


Q ss_pred             ccceeecCCCcccccCc-cccCCCCCCCEEEccCCcceeeCc---ccccccccCCCeeEEeeccccC
Q psy14765        127 YLKSINLAHNPINQISS-YSFQSTPGIRYIDMSNCQIHTIYS---EAFYVMVLPGSNLTLDCRVQSA  189 (269)
Q Consensus       127 ~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~~l~~l~l~~n~~~~  189 (269)
                      +|+.|++++|.+++++. ..+..+++|+.|++++|.++++++   ..+..++. ++.+.+..|....
T Consensus        96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~-L~~L~l~~n~~~~  161 (168)
T 2ell_A           96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ-LTYLDGYDREDQE  161 (168)
T ss_dssp             TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSS-CCEETTEETTSCB
T ss_pred             CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCcc-CcEecCCCCChhh
Confidence            55555555555555432 345555555555555555555544   34444443 4555555544433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=1.1e-16  Score=134.06  Aligned_cols=144  Identities=16%  Similarity=0.254  Sum_probs=117.9

Q ss_pred             CCcEEEcCCCCCcccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765         34 GKRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL  111 (269)
Q Consensus        34 ~~~~v~c~~~~l~~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  111 (269)
                      .-+.+++++++++.+|. +.  ++++.|++++|.++.+++  |.  ++++|+.|++++|+++.+++  +.. ++|+.|++
T Consensus        42 ~L~~L~l~~n~i~~l~~-l~~l~~L~~L~L~~N~i~~~~~--l~--~l~~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L  113 (263)
T 1xeu_A           42 GVQNFNGDNSNIQSLAG-MQFFTNLKELHLSHNQISDLSP--LK--DLTKLEELSVNRNRLKNLNG--IPS-ACLSRLFL  113 (263)
T ss_dssp             TCSEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GT--TCSSCCEEECCSSCCSCCTT--CCC-SSCCEEEC
T ss_pred             cCcEEECcCCCcccchH-HhhCCCCCEEECCCCccCCChh--hc--cCCCCCEEECCCCccCCcCc--ccc-CcccEEEc
Confidence            35788999999988873 33  789999999999998887  65  78999999999999998865  333 88999999


Q ss_pred             CCCCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCC
Q psy14765        112 SDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSAT  190 (269)
Q Consensus       112 ~~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~  190 (269)
                      ++|+++.++. .. +++|+.|++++|++++++  .++.+++|+.|++++|+++++  ..+..++. ++.+.+++|.+...
T Consensus       114 ~~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~-L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          114 DNNELRDTDS-LIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKK-VNWIDLTGQKCVNE  187 (263)
T ss_dssp             CSSCCSBSGG-GTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCC-CCEEEEEEEEEECC
T ss_pred             cCCccCCChh-hcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch--HHhccCCC-CCEEeCCCCcccCC
Confidence            9999998764 33 889999999999999884  478889999999999999888  55666665 78889998887766


Q ss_pred             C
Q psy14765        191 P  191 (269)
Q Consensus       191 ~  191 (269)
                      +
T Consensus       188 ~  188 (263)
T 1xeu_A          188 P  188 (263)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.69  E-value=6.9e-17  Score=125.92  Aligned_cols=130  Identities=17%  Similarity=0.192  Sum_probs=115.6

Q ss_pred             CcEEEcCCCCCc--ccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765         35 KRTVECIDRNFY--TIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD  110 (269)
Q Consensus        35 ~~~v~c~~~~l~--~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  110 (269)
                      -+.++++++.++  .+|..+.  ++|+.|++++|.++.+  ..|.  .+++|+.|++++|+++...+..+..+++|+.|+
T Consensus        26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLP--KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCC--CCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhc--cCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            689999999998  8887654  7999999999999988  5566  899999999999999997777788899999999


Q ss_pred             cCCCCCCCcC--CccC-ccccceeecCCCcccccCc---cccCCCCCCCEEEccCCcceeeCcc
Q psy14765        111 LSDNLLSTVP--SLIY-IPYLKSINLAHNPINQISS---YSFQSTPGIRYIDMSNCQIHTIYSE  168 (269)
Q Consensus       111 L~~N~l~~l~--~~~~-l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~L~~N~l~~~~~~  168 (269)
                      +++|.++.++  .... +++|+.|++++|+++++++   ..+..+++|+.|++++|.+.+++.+
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            9999999886  3444 9999999999999999977   5789999999999999999988754

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.69  E-value=3.7e-17  Score=139.99  Aligned_cols=170  Identities=12%  Similarity=0.050  Sum_probs=137.0

Q ss_pred             CcEEEcCCCCCcccCC-------CCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccc---cchh-hhcCC
Q psy14765         35 KRTVECIDRNFYTIPE-------GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF---VDDR-AFRGV  103 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~-------~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~---~~~~-~~~~l  103 (269)
                      -++++.++|.+.....       ...++++.|++++|.+..+++..|.  ++++|++|++++|++.+   +++. .+..+
T Consensus       119 L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l  196 (310)
T 4glp_A          119 LSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR--AFPALTSLDLSDNPGLGERGLMAALCPHKF  196 (310)
T ss_dssp             CSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC--CCTTCCEEECCSCTTCHHHHHHTTSCTTSS
T ss_pred             CCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc--cCCCCCEEECCCCCCccchhhhHHHhhhcC
Confidence            6789999999986322       2247999999999999999999998  89999999999999875   3322 24678


Q ss_pred             CCCCEEEcCCCCCCCcCCc---cC--ccccceeecCCCcccccCccccCCC---CCCCEEEccCCcceeeCccccccccc
Q psy14765        104 TNMDELDLSDNLLSTVPSL---IY--IPYLKSINLAHNPINQISSYSFQST---PGIRYIDMSNCQIHTIYSEAFYVMVL  175 (269)
Q Consensus       104 ~~L~~L~L~~N~l~~l~~~---~~--l~~L~~L~L~~N~i~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~  175 (269)
                      ++|++|++++|+++.++..   .+  +++|++|+|++|+++++.|..+..+   ++|++|+|++|+++.+|...+    .
T Consensus       197 ~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~----~  272 (310)
T 4glp_A          197 PAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP----A  272 (310)
T ss_dssp             CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC----S
T ss_pred             CCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc----C
Confidence            9999999999999877654   33  7999999999999999966666665   699999999999999987654    2


Q ss_pred             CCCeeEEeeccccCCCccccceecccccccccccCcccc
Q psy14765        176 PGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKIN  214 (269)
Q Consensus       176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~  214 (269)
                      .++.++++.|.+...+. ...+   ..++.+++.+|.+.
T Consensus       273 ~L~~L~Ls~N~l~~~~~-~~~l---~~L~~L~L~~N~l~  307 (310)
T 4glp_A          273 KLRVLDLSSNRLNRAPQ-PDEL---PEVDNLTLDGNPFL  307 (310)
T ss_dssp             CCSCEECCSCCCCSCCC-TTSC---CCCSCEECSSTTTS
T ss_pred             CCCEEECCCCcCCCCch-hhhC---CCccEEECcCCCCC
Confidence            47999999999987643 2333   33788888888765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=4.6e-16  Score=130.29  Aligned_cols=165  Identities=15%  Similarity=0.138  Sum_probs=136.2

Q ss_pred             cEEEcCCCCCcccCCCC-CCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCC
Q psy14765         36 RTVECIDRNFYTIPEGI-DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN  114 (269)
Q Consensus        36 ~~v~c~~~~l~~ip~~~-~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N  114 (269)
                      ..++++++.+++++... .++++.|++++|.++.++  .+.  .+++|+.|++++|+|+.+++  +..+++|+.|++++|
T Consensus        22 ~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~--~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           22 VKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQ--FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN   95 (263)
T ss_dssp             HHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGG--GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred             HHHHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHh--hCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC
Confidence            34567788888877311 189999999999999988  355  78999999999999999987  899999999999999


Q ss_pred             CCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCccc
Q psy14765        115 LLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRI  194 (269)
Q Consensus       115 ~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~~  194 (269)
                      +++.++...+ ++|+.|++++|.+++++  .++.+++|+.|++++|++++++  .+..++. ++.+.+++|.+... .  
T Consensus        96 ~l~~l~~~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~-L~~L~L~~N~i~~~-~--  166 (263)
T 1xeu_A           96 RLKNLNGIPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSK-LEVLDLHGNEITNT-G--  166 (263)
T ss_dssp             CCSCCTTCCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTT-CCEEECTTSCCCBC-T--
T ss_pred             ccCCcCcccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCC-CCEEECCCCcCcch-H--
Confidence            9999887665 89999999999999984  4889999999999999999985  5666665 79999999998877 2  


Q ss_pred             cceecccccccccccCcccccc
Q psy14765        195 MWSINRKIYDHVNWNSNKINIK  216 (269)
Q Consensus       195 ~~~~~~~~l~~l~~~~n~~~~~  216 (269)
                       ++.....++.+++.+|.+...
T Consensus       167 -~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          167 -GLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             -TSTTCCCCCEEEEEEEEEECC
T ss_pred             -HhccCCCCCEEeCCCCcccCC
Confidence             333344578888888877543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=3.3e-16  Score=150.78  Aligned_cols=196  Identities=16%  Similarity=0.169  Sum_probs=147.1

Q ss_pred             CcEEEcCCCCCcccCCCCC----CCceEEEeecCCccccccccc---cccCCCcccEEEcccccccccchhhhcCCCCCC
Q psy14765         35 KRTVECIDRNFYTIPEGID----LDTQVLDLSSNNINVLQKEIF---LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD  107 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~----~~l~~L~l~~n~l~~i~~~~f---~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~  107 (269)
                      -+.+++++|.++.+|..+.    ++|+.|++++|.+....+...   ..+.+++|+.|++++|+|+.+++..+..+++|+
T Consensus       621 L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~  700 (876)
T 4ecn_A          621 VEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS  700 (876)
T ss_dssp             CCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCS
T ss_pred             CCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCC
Confidence            6789999999999997654    249999999999975443322   111356899999999999999888888899999


Q ss_pred             EEEcCCCCCCCcCCccC-cc--------ccceeecCCCcccccCccccC--CCCCCCEEEccCCcceeeCcccccccccC
Q psy14765        108 ELDLSDNLLSTVPSLIY-IP--------YLKSINLAHNPINQISSYSFQ--STPGIRYIDMSNCQIHTIYSEAFYVMVLP  176 (269)
Q Consensus       108 ~L~L~~N~l~~l~~~~~-l~--------~L~~L~L~~N~i~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~~  176 (269)
                      .|+|++|.++.+|...+ ..        +|+.|+|++|+++.++.. +.  .+++|+.|+|++|+++++|.. +..++. 
T Consensus       701 ~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~-l~~~~l~~L~~L~Ls~N~L~~lp~~-l~~L~~-  777 (876)
T 4ecn_A          701 TIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD-FRATTLPYLSNMDVSYNCFSSFPTQ-PLNSSQ-  777 (876)
T ss_dssp             EEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGG-GSTTTCTTCCEEECCSSCCSSCCCG-GGGCTT-
T ss_pred             EEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHH-hhhccCCCcCEEEeCCCCCCccchh-hhcCCC-
Confidence            99999999999998877 33        899999999999988554 54  889999999999999997654 456655 


Q ss_pred             CCeeEEee------cc-ccCCCccccceecccccccccccCccccccccceeecCCCeeeeeeccceee
Q psy14765        177 GSNLTLDC------RV-QSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVFSGGVDLA  238 (269)
Q Consensus       177 l~~l~l~~------n~-~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~  238 (269)
                      ++.+.++.      |. .+..|..+   .....++.+++++|.++..+..+.  .....+.+..+.+..
T Consensus       778 L~~L~Ls~N~~ls~N~l~~~ip~~l---~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          778 LKAFGIRHQRDAEGNRILRQWPTGI---TTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNIS  841 (876)
T ss_dssp             CCEEECCCCBCTTCCBCCCCCCTTG---GGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCTTCE
T ss_pred             CCEEECCCCCCcccccccccChHHH---hcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCCCCc
Confidence            78888865      33 33444333   334458888999999877766654  344555555554443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.67  E-value=2.5e-16  Score=123.23  Aligned_cols=106  Identities=22%  Similarity=0.347  Sum_probs=94.3

Q ss_pred             ceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeec
Q psy14765         56 TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINL  133 (269)
Q Consensus        56 l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L  133 (269)
                      .+.+++++|.++.+|...+     ++|+.|++++|+|+++++..|.++++|++|+|++|+|+.++...|  +++|+.|+|
T Consensus        11 ~~~l~~s~n~l~~ip~~~~-----~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP-----TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC-----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCCCCcCccCccCC-----CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence            4679999999999987753     678999999999999999899999999999999999999998887  899999999


Q ss_pred             CCCcccccCccccCCCCCCCEEEccCCcceeeC
Q psy14765        134 AHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY  166 (269)
Q Consensus       134 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~  166 (269)
                      ++|+|+++++..|+.+++|+.|+|++|.++...
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            999999998888999999999999999887654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.67  E-value=9.7e-16  Score=147.95  Aligned_cols=106  Identities=24%  Similarity=0.396  Sum_probs=89.5

Q ss_pred             CcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765         35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL  111 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  111 (269)
                      -+.++.+++.+..+++..+   ++++.|++++|.++.+++..|.  ++++|++|++++|+++.+.+..|.++++|+.|++
T Consensus       268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  345 (844)
T 3j0a_A          268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY--GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL  345 (844)
T ss_dssp             CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT--TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred             ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc--CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence            5788888888888766544   6888999999999988888887  8889999999999999888888888999999999


Q ss_pred             CCCCCCCcCCccC--ccccceeecCCCcccccC
Q psy14765        112 SDNLLSTVPSLIY--IPYLKSINLAHNPINQIS  142 (269)
Q Consensus       112 ~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~  142 (269)
                      ++|.++.++...|  +++|+.|++++|.+++++
T Consensus       346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~  378 (844)
T 3j0a_A          346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH  378 (844)
T ss_dssp             CSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred             CCCCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence            9999988887776  888888888888877653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.66  E-value=4.2e-16  Score=122.48  Aligned_cols=106  Identities=17%  Similarity=0.321  Sum_probs=95.6

Q ss_pred             eEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecC
Q psy14765         57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLA  134 (269)
Q Consensus        57 ~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~  134 (269)
                      +.+++++|.++.+|...+     ++|+.|++++|+|+++++..|.++++|+.|+|++|+|+.++...|  +++|+.|+|+
T Consensus        15 ~~l~~~~n~l~~iP~~~~-----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP-----TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC-----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cEEEeCCCCCCccCCCcC-----CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            679999999999998753     689999999999999999999999999999999999999998876  8999999999


Q ss_pred             CCcccccCccccCCCCCCCEEEccCCcceeeCc
Q psy14765        135 HNPINQISSYSFQSTPGIRYIDMSNCQIHTIYS  167 (269)
Q Consensus       135 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  167 (269)
                      +|+|+++++..|+.+++|+.|+|++|.+...+.
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            999999988889999999999999998886543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.66  E-value=1e-15  Score=129.96  Aligned_cols=145  Identities=14%  Similarity=0.203  Sum_probs=126.8

Q ss_pred             CCcEEEcCCCCCcccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765         34 GKRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL  111 (269)
Q Consensus        34 ~~~~v~c~~~~l~~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  111 (269)
                      .-+.+++++|.++.+++ +.  ++|+.|++++|.++.++.  +.  .+++|+.|++++|+|+.++  .+..+++|+.|++
T Consensus        69 ~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~--~l~~L~~L~L~~n~i~~~~--~l~~l~~L~~L~l  141 (291)
T 1h6t_A           69 NVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS--LK--DLKKLKSLSLEHNGISDIN--GLVHLPQLESLYL  141 (291)
T ss_dssp             TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG--GT--TCTTCCEEECTTSCCCCCG--GGGGCTTCCEEEC
T ss_pred             CCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh--hc--cCCCCCEEECCCCcCCCCh--hhcCCCCCCEEEc
Confidence            36899999999999876 33  899999999999999775  55  8999999999999999984  5889999999999


Q ss_pred             CCCCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCC
Q psy14765        112 SDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSAT  190 (269)
Q Consensus       112 ~~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~  190 (269)
                      ++|.++.++ ... +++|+.|++++|+++++++  +..+++|+.|++++|.++.++.  +..++. ++.+.+++|.+...
T Consensus       142 ~~n~l~~~~-~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~--l~~l~~-L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          142 GNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKN-LDVLELFSQECLNK  215 (291)
T ss_dssp             CSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG--GTTCTT-CSEEEEEEEEEECC
T ss_pred             cCCcCCcch-hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh--hccCCC-CCEEECcCCcccCC
Confidence            999999883 333 9999999999999999976  8999999999999999999853  667765 79999999987765


Q ss_pred             C
Q psy14765        191 P  191 (269)
Q Consensus       191 ~  191 (269)
                      +
T Consensus       216 ~  216 (291)
T 1h6t_A          216 P  216 (291)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.66  E-value=4.8e-16  Score=144.55  Aligned_cols=165  Identities=17%  Similarity=0.199  Sum_probs=120.1

Q ss_pred             CCcEEEcCCCCCcccCCCC-CCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcC
Q psy14765         34 GKRTVECIDRNFYTIPEGI-DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS  112 (269)
Q Consensus        34 ~~~~v~c~~~~l~~ip~~~-~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~  112 (269)
                      .-+.++++++.+..+|..- .++|+.|+|++|.++.+++  +.  .+++|+.|+|++|.|+.++  .+..+++|+.|+|+
T Consensus        44 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~--~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           44 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LT--NLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLE  117 (605)
T ss_dssp             TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GG--GCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECT
T ss_pred             CCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hc--cCCCCCEEECcCCCCCCCh--hhccCCCCCEEEec
Confidence            3567788888887776421 2788888888888887776  44  7788888888888888765  47788888888888


Q ss_pred             CCCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCC
Q psy14765        113 DNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATP  191 (269)
Q Consensus       113 ~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~  191 (269)
                      +|.++.++. .. +++|+.|+|++|.++++  ..+..+++|+.|+|++|.++++++  +..++. ++.+.+++|.+...+
T Consensus       118 ~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~-L~~L~Ls~N~i~~l~  191 (605)
T 1m9s_A          118 HNGISDING-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTK-LQNLYLSKNHISDLR  191 (605)
T ss_dssp             TSCCCCCGG-GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTT-CCEEECCSSCCCBCG
T ss_pred             CCCCCCCcc-ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCC-CCEEECcCCCCCCCh
Confidence            888887653 33 78888888888888877  347778888888888888887765  566655 678888888776653


Q ss_pred             ccccceecccccccccccCcccc
Q psy14765        192 CRIMWSINRKIYDHVNWNSNKIN  214 (269)
Q Consensus       192 ~~~~~~~~~~~l~~l~~~~n~~~  214 (269)
                          .+.....++.+++.+|.+.
T Consensus       192 ----~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          192 ----ALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             ----GGTTCTTCSEEECCSEEEE
T ss_pred             ----HHccCCCCCEEEccCCcCc
Confidence                2333344667777777654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.66  E-value=5.7e-16  Score=134.26  Aligned_cols=168  Identities=12%  Similarity=0.153  Sum_probs=116.4

Q ss_pred             CcEEEcCCCCCcccCCC-CCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCC
Q psy14765         35 KRTVECIDRNFYTIPEG-IDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD  113 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~-~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~  113 (269)
                      -+.++++++.+..++.. -.++++.|++++|.+..+++  +.  .+++|+.|++++|.++.+.+  +..+++|+.|++++
T Consensus       157 L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~  230 (347)
T 4fmz_A          157 LNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LA--SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGN  230 (347)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG--GG--GCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             CcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc--cc--CCCccceeecccCCCCCCch--hhcCCcCCEEEccC
Confidence            56788888887776651 12678888888888887776  44  67788888888888877765  67777888888888


Q ss_pred             CCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCc
Q psy14765        114 NLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPC  192 (269)
Q Consensus       114 N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~  192 (269)
                      |.++.++. .. +++|+.|++++|.++.++  .+..+++|+.|++++|.+++++  .+..++. ++.+.+++|.+...++
T Consensus       231 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~-L~~L~L~~n~l~~~~~  304 (347)
T 4fmz_A          231 NKITDLSP-LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDIS--VLNNLSQ-LNSLFLNNNQLGNEDM  304 (347)
T ss_dssp             SCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTT-CSEEECCSSCCCGGGH
T ss_pred             CccCCCcc-hhcCCCCCEEECCCCccCCCh--hHhcCCCcCEEEccCCccCCCh--hhcCCCC-CCEEECcCCcCCCcCh
Confidence            88877765 33 777888888888777762  3677778888888888777763  3555554 6777777777655443


Q ss_pred             cccceecccccccccccCcccccc
Q psy14765        193 RIMWSINRKIYDHVNWNSNKINIK  216 (269)
Q Consensus       193 ~~~~~~~~~~l~~l~~~~n~~~~~  216 (269)
                      ..  +.....++.+++.+|.+...
T Consensus       305 ~~--l~~l~~L~~L~L~~n~l~~~  326 (347)
T 4fmz_A          305 EV--IGGLTNLTTLFLSQNHITDI  326 (347)
T ss_dssp             HH--HHTCTTCSEEECCSSSCCCC
T ss_pred             hH--hhccccCCEEEccCCccccc
Confidence            22  22333467777777776543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=8.4e-16  Score=122.98  Aligned_cols=148  Identities=14%  Similarity=0.159  Sum_probs=121.1

Q ss_pred             CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCC-cCCccC-cccccee
Q psy14765         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST-VPSLIY-IPYLKSI  131 (269)
Q Consensus        54 ~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~-l~~L~~L  131 (269)
                      ++++.|++++|.++.++ . +.  .+++|++|++++|.++.++  .+..+++|++|++++|.++. .+.... +++|+.|
T Consensus        44 ~~L~~L~l~~n~i~~l~-~-l~--~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT-G-IE--YAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HTCCEEEEESSCCSCCT-T-GG--GCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             CCccEEeccCCCccChH-H-Hh--cCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            68999999999999888 3 44  7899999999999888774  58899999999999999996 444444 9999999


Q ss_pred             ecCCCcccccCccccCCCCCCCEEEccCCc-ceeeCcccccccccCCCeeEEeeccccCCCccccceecccccccccccC
Q psy14765        132 NLAHNPINQISSYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNS  210 (269)
Q Consensus       132 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~  210 (269)
                      ++++|++++..+..++.+++|+.|++++|. ++.++  .+..++. ++.+.+++|.+...+ .+   .....++++++.+
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~-L~~L~l~~n~i~~~~-~l---~~l~~L~~L~l~~  190 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPE-LKSLNIQFDGVHDYR-GI---EDFPKLNQLYAFS  190 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSS-CCEEECTTBCCCCCT-TG---GGCSSCCEEEECB
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCC-CCEEECCCCCCcChH-Hh---ccCCCCCEEEeeC
Confidence            999999998777789999999999999998 88875  5677765 799999999887765 22   2333478888888


Q ss_pred             cccc
Q psy14765        211 NKIN  214 (269)
Q Consensus       211 n~~~  214 (269)
                      |+++
T Consensus       191 N~i~  194 (197)
T 4ezg_A          191 QTIG  194 (197)
T ss_dssp             C---
T ss_pred             cccC
Confidence            8764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=5.5e-16  Score=149.29  Aligned_cols=191  Identities=15%  Similarity=0.143  Sum_probs=93.8

Q ss_pred             CcEEEcCCCCCcccCC--CCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCC-CCEE
Q psy14765         35 KRTVECIDRNFYTIPE--GID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN-MDEL  109 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~--~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~-L~~L  109 (269)
                      -+.+++++|.++.+|.  .+.  ++|+.|++++|.++.+|  .|.  .+++|+.|++++|+++.++ ..+..+++ |+.|
T Consensus       550 L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~--~L~~L~~L~Ls~N~l~~lp-~~l~~l~~~L~~L  624 (876)
T 4ecn_A          550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFG--TNVKLTDLKLDYNQIEEIP-EDFCAFTDQVEGL  624 (876)
T ss_dssp             CCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCC--TTSEESEEECCSSCCSCCC-TTSCEECTTCCEE
T ss_pred             ccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhc--CCCcceEEECcCCccccch-HHHhhccccCCEE
Confidence            4556666666665555  332  45666666666666555  344  5556666666666666443 23555555 6666


Q ss_pred             EcCCCCCCCcCCccC-c--cccceeecCCCcc-----------------------------cccCccccCCCCCCCEEEc
Q psy14765        110 DLSDNLLSTVPSLIY-I--PYLKSINLAHNPI-----------------------------NQISSYSFQSTPGIRYIDM  157 (269)
Q Consensus       110 ~L~~N~l~~l~~~~~-l--~~L~~L~L~~N~i-----------------------------~~~~~~~~~~l~~L~~L~L  157 (269)
                      ++++|.++.+|.... +  ++|+.|++++|++                             +.++...+..+++|+.|+|
T Consensus       625 ~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~L  704 (876)
T 4ecn_A          625 GFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL  704 (876)
T ss_dssp             ECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEEC
T ss_pred             ECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEEC
Confidence            666666555553322 2  1244444444444                             4343333334455555555


Q ss_pred             cCCcceeeCccccccccc------CCCeeEEeeccccCCCccccceecccccccccccCccccccccceeecCCCeeeee
Q psy14765        158 SNCQIHTIYSEAFYVMVL------PGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVF  231 (269)
Q Consensus       158 ~~N~l~~~~~~~~~~l~~------~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~  231 (269)
                      ++|+++.++...+.....      .++.+.++.|.+...|..+. ......++.+++++|.+...+..+........+.+
T Consensus       705 s~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~-~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~L  783 (876)
T 4ecn_A          705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR-ATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGI  783 (876)
T ss_dssp             CSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGS-TTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEEC
T ss_pred             CCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhh-hccCCCcCEEEeCCCCCCccchhhhcCCCCCEEEC
Confidence            555555555444433210      24555555555554443322 00122255555556655444444444444444444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.62  E-value=3.4e-16  Score=123.02  Aligned_cols=127  Identities=13%  Similarity=0.200  Sum_probs=66.4

Q ss_pred             CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--cccccee
Q psy14765         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSI  131 (269)
Q Consensus        54 ~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L  131 (269)
                      .+++.|++++|.++.++. ...  ..++|+.|++++|.|+++  ..|..+++|++|++++|.++.+++..+  +++|+.|
T Consensus        19 ~~L~~L~l~~n~l~~i~~-~~~--~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVIEN-LGA--TLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             TSCEEEECTTSCCCSCCC-GGG--GTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CCceEEEeeCCCCchhHH-hhh--cCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            355555555555555532 221  122556666666655555  245555556666666666555555443  5556666


Q ss_pred             ecCCCcccccCc-cccCCCCCCCEEEccCCcceeeCcc---cccccccCCCeeEEeecc
Q psy14765        132 NLAHNPINQISS-YSFQSTPGIRYIDMSNCQIHTIYSE---AFYVMVLPGSNLTLDCRV  186 (269)
Q Consensus       132 ~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~~l~~l~l~~n~  186 (269)
                      ++++|.++.++. ..+..+++|+.|++++|.++.++..   .+..++. ++.+++..|.
T Consensus        94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~-L~~Ld~~~n~  151 (176)
T 1a9n_A           94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQ-VRVLDFQKVK  151 (176)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTT-CSEETTEECC
T ss_pred             ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCc-cceeCCCcCC
Confidence            666665555533 2355555566666666655555433   2344443 4555555444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.62  E-value=1.1e-14  Score=131.37  Aligned_cols=96  Identities=25%  Similarity=0.338  Sum_probs=60.7

Q ss_pred             CcEEEcCCCCCcccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcC
Q psy14765         35 KRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS  112 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~  112 (269)
                      -+.++++++.++.+|. +.  ++++.|++++|.++.++   +.  .+++|++|++++|+|++++   +..+++|++|+++
T Consensus        44 L~~L~Ls~n~l~~~~~-l~~l~~L~~L~Ls~n~l~~~~---~~--~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~  114 (457)
T 3bz5_A           44 LTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTLD---LS--QNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCD  114 (457)
T ss_dssp             CCEEECCSSCCCCCTT-GGGCTTCSEEECCSSCCSCCC---CT--TCTTCSEEECCSSCCSCCC---CTTCTTCCEEECC
T ss_pred             CCEEEccCCCcccChh-hcccCCCCEEEccCCcCCeEc---cc--cCCCCCEEECcCCCCceee---cCCCCcCCEEECC
Confidence            4667777777776652 32  56777777777776664   43  5666677777766666653   5666666666666


Q ss_pred             CCCCCCcCCccC-ccccceeecCCCccccc
Q psy14765        113 DNLLSTVPSLIY-IPYLKSINLAHNPINQI  141 (269)
Q Consensus       113 ~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~  141 (269)
                      +|.++.++  .. +++|+.|++++|+++++
T Consensus       115 ~N~l~~l~--~~~l~~L~~L~l~~N~l~~l  142 (457)
T 3bz5_A          115 TNKLTKLD--VSQNPLLTYLNCARNTLTEI  142 (457)
T ss_dssp             SSCCSCCC--CTTCTTCCEEECTTSCCSCC
T ss_pred             CCcCCeec--CCCCCcCCEEECCCCcccee
Confidence            66666654  22 66666666666666554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.62  E-value=1.5e-16  Score=151.12  Aligned_cols=132  Identities=19%  Similarity=0.239  Sum_probs=100.2

Q ss_pred             CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC-ccccceee
Q psy14765         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSIN  132 (269)
Q Consensus        54 ~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~-l~~L~~L~  132 (269)
                      ..|+.|+|++|.+..++...|   ++++|++|+|++|.|+.++ ..|.++++|++|+|++|.|+.+|..+. +++|++|+
T Consensus       224 ~~L~~L~Ls~n~l~~l~~~~~---~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          224 QLWHALDLSNLQIFNISANIF---KYDFLTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY  299 (727)
T ss_dssp             CCCCEEECTTSCCSCCCGGGG---GCCSCSCCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred             CCCcEEECCCCCCCCCChhhc---CCCCCCEEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence            578888888888888888877   6888888888888888665 567888888888888888888877766 88888888


Q ss_pred             cCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCC
Q psy14765        133 LAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSAT  190 (269)
Q Consensus       133 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~  190 (269)
                      |++|.|+.++.. |+.+++|+.|+|++|.|++.++..+.........+.+..|.+...
T Consensus       300 L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~  356 (727)
T 4b8c_D          300 FFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP  356 (727)
T ss_dssp             CCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred             CCCCCCCccChh-hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCc
Confidence            888888877544 888888888888888888777766655433222345555555443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=8.9e-16  Score=117.18  Aligned_cols=109  Identities=22%  Similarity=0.338  Sum_probs=65.3

Q ss_pred             CCceEEEeecCCcc--ccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCC-cCCccC-ccccc
Q psy14765         54 LDTQVLDLSSNNIN--VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST-VPSLIY-IPYLK  129 (269)
Q Consensus        54 ~~l~~L~l~~n~l~--~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~-l~~L~  129 (269)
                      ++++.|++++|.++  .++. .|.  .+++|+.|++++|.++.+  ..+..+++|++|++++|.++. +|.... +++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~-~~~--~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEG-LTD--EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCS-CCT--TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             ccCeEEEccCCcCChhHHHH-HHh--hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            45666666666666  4443 333  566666666666666666  446666666666666666665 333332 66666


Q ss_pred             eeecCCCcccccC-ccccCCCCCCCEEEccCCcceeeCc
Q psy14765        130 SINLAHNPINQIS-SYSFQSTPGIRYIDMSNCQIHTIYS  167 (269)
Q Consensus       130 ~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~  167 (269)
                      .|++++|++++++ +..++.+++|+.|++++|.++++++
T Consensus        92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred             EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence            6666666666653 2445666666666666666666654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.62  E-value=1.2e-14  Score=125.99  Aligned_cols=146  Identities=16%  Similarity=0.253  Sum_probs=98.3

Q ss_pred             CCcEEEcCCCCCcccCCC-CCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcC
Q psy14765         34 GKRTVECIDRNFYTIPEG-IDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS  112 (269)
Q Consensus        34 ~~~~v~c~~~~l~~ip~~-~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~  112 (269)
                      .-+.++++++.+..+|.- -.++++.|++++|.++.+++  |.  ++++|++|++++|.++.++  .|..+++|++|+++
T Consensus        45 ~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~--~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l~  118 (347)
T 4fmz_A           45 SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LS--NLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLN  118 (347)
T ss_dssp             TCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECT
T ss_pred             cccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hh--cCCcCCEEEccCCcccCch--HHcCCCcCCEEECc
Confidence            357888888888887651 12788888888888888777  55  7888888888888888874  47888888888888


Q ss_pred             CCCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCC
Q psy14765        113 DNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSAT  190 (269)
Q Consensus       113 ~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~  190 (269)
                      +|.++.++. .. +++|+.|++++|......+. +..+++|+.|++++|.++.+++  +..++. ++.+.+++|.+...
T Consensus       119 ~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~-L~~L~l~~n~l~~~  192 (347)
T 4fmz_A          119 EDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTD-LYSLSLNYNQIEDI  192 (347)
T ss_dssp             TSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTT-CSEEECTTSCCCCC
T ss_pred             CCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCC-CCEEEccCCccccc
Confidence            888887765 33 77777777777743333222 5566666666666666655543  333333 45555555544433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.62  E-value=9.5e-16  Score=120.48  Aligned_cols=127  Identities=17%  Similarity=0.269  Sum_probs=108.7

Q ss_pred             CcEEEcCCCCCcccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcC
Q psy14765         35 KRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS  112 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~  112 (269)
                      -+.++++++.++.+|....  ++++.|++++|.++.+  ..|.  ++++|++|++++|+|+.+++..|..+++|++|+++
T Consensus        21 L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~   96 (176)
T 1a9n_A           21 DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFP--LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   96 (176)
T ss_dssp             CEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCC--CCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             ceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccc--cCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence            5789999999998865222  4899999999999988  4566  88999999999999999988878899999999999


Q ss_pred             CCCCCCcCC--ccC-ccccceeecCCCcccccCcc---ccCCCCCCCEEEccCCcceee
Q psy14765        113 DNLLSTVPS--LIY-IPYLKSINLAHNPINQISSY---SFQSTPGIRYIDMSNCQIHTI  165 (269)
Q Consensus       113 ~N~l~~l~~--~~~-l~~L~~L~L~~N~i~~~~~~---~~~~l~~L~~L~L~~N~l~~~  165 (269)
                      +|.++.++.  ... +++|+.|++++|+++.++..   .++.+++|+.|++++|.+.+.
T Consensus        97 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~  155 (176)
T 1a9n_A           97 NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER  155 (176)
T ss_dssp             SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred             CCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence            999998886  344 89999999999999988554   478899999999999987764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.61  E-value=1.4e-14  Score=130.58  Aligned_cols=182  Identities=16%  Similarity=0.122  Sum_probs=146.5

Q ss_pred             CCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCC
Q psy14765         34 GKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD  113 (269)
Q Consensus        34 ~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~  113 (269)
                      .-+.++++++.++.+|-.-.++++.|++++|.++.++   |.  ++++|++|++++|++++++   +..+++|++|++++
T Consensus        65 ~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~---~~--~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~  136 (457)
T 3bz5_A           65 GLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD---VT--PLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCAR  136 (457)
T ss_dssp             TCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC---CT--TCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTT
T ss_pred             CCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee---cC--CCCcCCEEECCCCcCCeec---CCCCCcCCEEECCC
Confidence            4689999999999998555589999999999999885   65  8999999999999999984   88999999999999


Q ss_pred             CCCCCcCCccC-ccccceeecCCCc-ccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCC
Q psy14765        114 NLLSTVPSLIY-IPYLKSINLAHNP-INQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATP  191 (269)
Q Consensus       114 N~l~~l~~~~~-l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~  191 (269)
                      |+++.++  .. +++|+.|++++|+ +..+   .++.+++|+.|++++|++++++   +..++. ++.+.++.|.+...+
T Consensus       137 N~l~~l~--l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~---l~~l~~-L~~L~l~~N~l~~~~  207 (457)
T 3bz5_A          137 NTLTEID--VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD---VSQNKL-LNRLNCDTNNITKLD  207 (457)
T ss_dssp             SCCSCCC--CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC---CTTCTT-CCEEECCSSCCSCCC
T ss_pred             Cccceec--cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec---cccCCC-CCEEECcCCcCCeec
Confidence            9999885  44 9999999999994 5555   3788999999999999999986   455554 789999999887763


Q ss_pred             ccccceecccccccccccCccccccccceeecCCCeeeeeeccceeee
Q psy14765        192 CRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVFSGGVDLAA  239 (269)
Q Consensus       192 ~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~  239 (269)
                           +.....++.+++.+|++...+  +..........+..+.+.+.
T Consensus       208 -----l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~  248 (457)
T 3bz5_A          208 -----LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTEL  248 (457)
T ss_dssp             -----CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC
T ss_pred             -----cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCc
Confidence                 223345888899999886654  44455555666666554443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.61  E-value=7.9e-15  Score=132.36  Aligned_cols=162  Identities=19%  Similarity=0.265  Sum_probs=84.9

Q ss_pred             cEEEcCCCCCcccCC-CCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCC
Q psy14765         36 RTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN  114 (269)
Q Consensus        36 ~~v~c~~~~l~~ip~-~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N  114 (269)
                      +.++++++.+..+++ +..++++.|++++|.++.++  .+.  .+++|+.|++++|.++++++  +..+++|+.|++++|
T Consensus       202 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~l~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n  275 (466)
T 1o6v_A          202 ESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN  275 (466)
T ss_dssp             SEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGG--GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred             CEEEecCCcccccccccccCCCCEEECCCCCcccch--hhh--cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCC
Confidence            445555555444332 11245555555555555543  233  45566666666666655544  555666666666666


Q ss_pred             CCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCcc
Q psy14765        115 LLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCR  193 (269)
Q Consensus       115 ~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~  193 (269)
                      .++.++. .. +++|+.|++++|+++++++  ++.+++|+.|++++|+++++++  +..++. ++.+.+++|.+...+  
T Consensus       276 ~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~-L~~L~l~~n~l~~~~--  347 (466)
T 1o6v_A          276 QISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTK-LQRLFFYNNKVSDVS--  347 (466)
T ss_dssp             CCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTT-CCEEECCSSCCCCCG--
T ss_pred             ccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCcc-CCEeECCCCccCCch--
Confidence            6665544 22 5566666666666665543  4555666666666666665543  333333 455666655554442  


Q ss_pred             ccceecccccccccccCccc
Q psy14765        194 IMWSINRKIYDHVNWNSNKI  213 (269)
Q Consensus       194 ~~~~~~~~~l~~l~~~~n~~  213 (269)
                        ++.....++.+++.+|.+
T Consensus       348 --~l~~l~~L~~L~l~~n~l  365 (466)
T 1o6v_A          348 --SLANLTNINWLSAGHNQI  365 (466)
T ss_dssp             --GGTTCTTCCEEECCSSCC
T ss_pred             --hhccCCCCCEEeCCCCcc
Confidence              222233355555555555

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=5.8e-16  Score=118.20  Aligned_cols=121  Identities=15%  Similarity=0.206  Sum_probs=105.1

Q ss_pred             CcEEEcCCCCCc--ccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765         35 KRTVECIDRNFY--TIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD  110 (269)
Q Consensus        35 ~~~v~c~~~~l~--~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  110 (269)
                      -+.++++++.++  .+|..+.  ++++.|++++|.++.+  ..|.  .+++|++|++++|+|+...+..+..+++|++|+
T Consensus        19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLP--KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCC--CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhh--cCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            578999999998  7887544  7999999999999988  5566  889999999999999996677888899999999


Q ss_pred             cCCCCCCCcC--CccC-ccccceeecCCCcccccCc---cccCCCCCCCEEEccC
Q psy14765        111 LSDNLLSTVP--SLIY-IPYLKSINLAHNPINQISS---YSFQSTPGIRYIDMSN  159 (269)
Q Consensus       111 L~~N~l~~l~--~~~~-l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~L~~  159 (269)
                      +++|.++.++  .... +++|+.|++++|+++++++   ..++.+++|+.|++++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999999875  4444 9999999999999999977   5688899999998864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.59  E-value=8.3e-15  Score=132.21  Aligned_cols=165  Identities=18%  Similarity=0.207  Sum_probs=127.6

Q ss_pred             CcEEEcCCCCCcccCCCC-CCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCC
Q psy14765         35 KRTVECIDRNFYTIPEGI-DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD  113 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~-~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~  113 (269)
                      -+.++++++.++.++... .++++.|++++|.++.+++  +.  ++++|+.|++++|.++.+++  +..+++|+.|++++
T Consensus       223 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~  296 (466)
T 1o6v_A          223 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNE  296 (466)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GT--TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS
T ss_pred             CCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hh--cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCC
Confidence            578888998888775422 2789999999999988776  55  78889999999999988866  78888899999999


Q ss_pred             CCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCc
Q psy14765        114 NLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPC  192 (269)
Q Consensus       114 N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~  192 (269)
                      |+++.++. .. +++|+.|++++|+++++.+  ++.+++|+.|++++|++++++  .+..++. ++.+.+++|.+...++
T Consensus       297 n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~-L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          297 NQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS--SLANLTN-INWLSAGHNQISDLTP  370 (466)
T ss_dssp             SCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG--GGTTCTT-CCEEECCSSCCCBCGG
T ss_pred             CcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch--hhccCCC-CCEEeCCCCccCccch
Confidence            99887766 33 8889999999998888865  678888899999988888873  4566665 7888888888776654


Q ss_pred             cccceecccccccccccCccccc
Q psy14765        193 RIMWSINRKIYDHVNWNSNKINI  215 (269)
Q Consensus       193 ~~~~~~~~~~l~~l~~~~n~~~~  215 (269)
                       +   .....++.+++.+|.+..
T Consensus       371 -~---~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          371 -L---ANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             -G---TTCTTCCEEECCCEEEEC
T ss_pred             -h---hcCCCCCEEeccCCcccC
Confidence             2   233346777777777654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.58  E-value=4.5e-14  Score=131.64  Aligned_cols=55  Identities=18%  Similarity=0.245  Sum_probs=37.9

Q ss_pred             CcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccc
Q psy14765         35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD   96 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~   96 (269)
                      -+.+++++|.++.+|. .+++|+.|++++|+|+.++.      .+++|++|++++|+|+.++
T Consensus        63 L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~l~~l~  117 (622)
T 3g06_A           63 ITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTSLPV------LPPGLLELSIFSNPLTHLP  117 (622)
T ss_dssp             CSEEEECSCCCSCCCC-CCTTCCEEEECSCCCSCCCC------CCTTCCEEEECSCCCCCCC
T ss_pred             CcEEEecCCCCCCCCC-cCCCCCEEEcCCCcCCcCCC------CCCCCCEEECcCCcCCCCC
Confidence            5778888888888777 45778888888888777665      2355666666666555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.58  E-value=8.1e-14  Score=125.48  Aligned_cols=162  Identities=17%  Similarity=0.244  Sum_probs=95.4

Q ss_pred             cEEEcCCCCCcccCCCCCCCceEEEeecCCcccccccccccc--------------C-CCcccEEEcccccccccchhhh
Q psy14765         36 RTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM--------------G-ITNIQKLYLRKCKLEFVDDRAF  100 (269)
Q Consensus        36 ~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~--------------~-l~~L~~L~L~~N~i~~~~~~~~  100 (269)
                      +.+++++++++.+|. ++++++.|++++|.++.++... ..+              . .++|++|++++|++++++  .|
T Consensus        74 ~~L~l~~~~l~~lp~-~~~~L~~L~l~~n~l~~lp~~~-~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp--~~  149 (454)
T 1jl5_A           74 HELELNNLGLSSLPE-LPPHLESLVASCNSLTELPELP-QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP--EL  149 (454)
T ss_dssp             SEEECTTSCCSCCCS-CCTTCSEEECCSSCCSSCCCCC-TTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC--CC
T ss_pred             CEEEecCCccccCCC-CcCCCCEEEccCCcCCcccccc-CCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc--cc
Confidence            556666666665555 3455555555555555544211 000              1 146777777777777765  37


Q ss_pred             cCCCCCCEEEcCCCCCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCee
Q psy14765        101 RGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNL  180 (269)
Q Consensus       101 ~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l  180 (269)
                      .++++|++|++++|+++.+|..  ..+|++|++++|++++++  .++++++|+.|++++|++++++...     ..++.+
T Consensus       150 ~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~~-----~~L~~L  220 (454)
T 1jl5_A          150 QNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDLP-----LSLESI  220 (454)
T ss_dssp             TTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCCC-----TTCCEE
T ss_pred             CCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCCc-----CcccEE
Confidence            7777777777777777776643  357777777777777764  3777777777777777777655321     124566


Q ss_pred             EEeeccccCCCccccceecccccccccccCcccc
Q psy14765        181 TLDCRVQSATPCRIMWSINRKIYDHVNWNSNKIN  214 (269)
Q Consensus       181 ~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~  214 (269)
                      .++.|.+...+ .+.   ....++.+++.+|++.
T Consensus       221 ~l~~n~l~~lp-~~~---~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          221 VAGNNILEELP-ELQ---NLPFLTTIYADNNLLK  250 (454)
T ss_dssp             ECCSSCCSSCC-CCT---TCTTCCEEECCSSCCS
T ss_pred             ECcCCcCCccc-ccC---CCCCCCEEECCCCcCC
Confidence            66666555444 221   2223555555555543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.57  E-value=1.2e-14  Score=135.26  Aligned_cols=182  Identities=18%  Similarity=0.171  Sum_probs=142.8

Q ss_pred             EcCCCCCcccCCC-CCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCC
Q psy14765         39 ECIDRNFYTIPEG-IDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS  117 (269)
Q Consensus        39 ~c~~~~l~~ip~~-~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~  117 (269)
                      .+..+.+..++.. -.+.|+.|++++|.+..++.  +.  .+++|+.|+|++|+|+.+++  +..+++|+.|+|++|.++
T Consensus        27 ~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~--~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~  100 (605)
T 1m9s_A           27 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQ--YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK  100 (605)
T ss_dssp             HTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GG--GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             hccCCCcccccchhcCCCCCEEECcCCCCCCChH--Hc--cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC
Confidence            3444555543331 12789999999999999874  55  79999999999999999987  889999999999999999


Q ss_pred             CcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCccccc
Q psy14765        118 TVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMW  196 (269)
Q Consensus       118 ~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~~~~  196 (269)
                      .++. +. +++|+.|+|++|.+.+++  .+..+++|+.|+|++|.++++  ..+..++. ++.+.+++|.+...++    
T Consensus       101 ~l~~-l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~-L~~L~Ls~N~l~~~~~----  170 (605)
T 1m9s_A          101 DLSS-LKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTK-LDTLSLEDNQISDIVP----  170 (605)
T ss_dssp             CCTT-STTCTTCCEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTT-CSEEECCSSCCCCCGG----
T ss_pred             CChh-hccCCCCCEEEecCCCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCC-CCEEECcCCcCCCchh----
Confidence            9873 44 999999999999999974  388999999999999999998  46677766 8999999999887765    


Q ss_pred             eecccccccccccCccccccccceeecCCCeeeeeecccee
Q psy14765        197 SINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVFSGGVDL  237 (269)
Q Consensus       197 ~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~  237 (269)
                      +.....++.+++++|.+...+ .+....+...+.+..+.+.
T Consensus       171 l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          171 LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred             hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCc
Confidence            333445888999999886543 3444555555555555443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.57  E-value=1e-13  Score=124.85  Aligned_cols=137  Identities=12%  Similarity=0.228  Sum_probs=81.6

Q ss_pred             cEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCC
Q psy14765         36 RTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL  115 (269)
Q Consensus        36 ~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~  115 (269)
                      +.+++++|.++.+|. .+++++.|++++|.++.+|  .|.  ++++|++|++++|++++++..    ..+|++|++++|.
T Consensus       114 ~~L~l~~n~l~~l~~-~~~~L~~L~L~~n~l~~lp--~~~--~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~  184 (454)
T 1jl5_A          114 KSLLVDNNNLKALSD-LPPLLEYLGVSNNQLEKLP--ELQ--NSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQ  184 (454)
T ss_dssp             CEEECCSSCCSCCCS-CCTTCCEEECCSSCCSSCC--CCT--TCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSC
T ss_pred             cEEECCCCccCcccC-CCCCCCEEECcCCCCCCCc--ccC--CCCCCCEEECCCCcCcccCCC----cccccEEECcCCc
Confidence            445555555554443 2367888888888888877  366  788888888888888876532    3467777777777


Q ss_pred             CCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccC
Q psy14765        116 LSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSA  189 (269)
Q Consensus       116 l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~  189 (269)
                      ++.+|. .. +++|+.|++++|.+++++..    .++|+.|++++|.++.++.  +..++. ++.+.++.|.+..
T Consensus       185 l~~l~~-~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~~lp~--~~~l~~-L~~L~l~~N~l~~  251 (454)
T 1jl5_A          185 LEELPE-LQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELPE--LQNLPF-LTTIYADNNLLKT  251 (454)
T ss_dssp             CSSCCC-CTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSCCC--CTTCTT-CCEEECCSSCCSS
T ss_pred             CCcCcc-ccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcCCcCCcccc--cCCCCC-CCEEECCCCcCCc
Confidence            777663 33 66666666666666654321    1344555555555544431  333332 3444444444433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.53  E-value=6.5e-15  Score=139.88  Aligned_cols=151  Identities=17%  Similarity=0.172  Sum_probs=101.1

Q ss_pred             CcEEEcCCCCCcccCCCCCCCceEEEeecCCccc---------cccccccccCCCcccEEEcccccccccchhhhcCCCC
Q psy14765         35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINV---------LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN  105 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~---------i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~  105 (269)
                      ...+.+.++.+..+|..+.   +.++|+.|.|..         +++..|.  +++.|+.|+|++|.|..+++..+ .+++
T Consensus       175 ~~~l~L~~n~~~~~~~~~l---~~l~Ls~~~i~~~~~~~n~~~~~~~~~~--~l~~L~~L~Ls~n~l~~l~~~~~-~l~~  248 (727)
T 4b8c_D          175 TPKIELFANGKDEANQALL---QHKKLSQYSIDEDDDIENRMVMPKDSKY--DDQLWHALDLSNLQIFNISANIF-KYDF  248 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG-GCCS
T ss_pred             cceEEeeCCCCCcchhhHh---hcCccCcccccCccccccceecChhhhc--cCCCCcEEECCCCCCCCCChhhc-CCCC
Confidence            4567777777777665443   334444444332         4566676  89999999999999999987655 8999


Q ss_pred             CCEEEcCCCCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEee
Q psy14765        106 MDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDC  184 (269)
Q Consensus       106 L~~L~L~~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~  184 (269)
                      |+.|+|++|.|+.+|..+. +++|+.|+|++|.|+.+ |..|+.+++|++|+|++|.|+.+|.. |..+.. ++.+.+++
T Consensus       249 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~-L~~L~L~~  325 (727)
T 4b8c_D          249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMVTTLPWE-FGNLCN-LQFLGVEG  325 (727)
T ss_dssp             CSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSC-CSSGGGGTTCSEEECCSSCCCCCCSS-TTSCTT-CCCEECTT
T ss_pred             CCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCcc-ChhhcCCCCCCEEECCCCCCCccChh-hhcCCC-ccEEeCCC
Confidence            9999999999999998777 99999999999999988 56699999999999999999999875 777776 89999999


Q ss_pred             ccccCCCccc
Q psy14765        185 RVQSATPCRI  194 (269)
Q Consensus       185 n~~~~~~~~~  194 (269)
                      |.+...++..
T Consensus       326 N~l~~~~p~~  335 (727)
T 4b8c_D          326 NPLEKQFLKI  335 (727)
T ss_dssp             SCCCSHHHHH
T ss_pred             CccCCCChHH
Confidence            9988665544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.51  E-value=5.2e-14  Score=122.04  Aligned_cols=104  Identities=21%  Similarity=0.385  Sum_probs=94.7

Q ss_pred             EEEeecC-CccccccccccccCCCcccEEEccc-ccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeec
Q psy14765         58 VLDLSSN-NINVLQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINL  133 (269)
Q Consensus        58 ~L~l~~n-~l~~i~~~~f~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L  133 (269)
                      .++.+++ +++.||.  +.  .+++|+.|+|++ |+|+.+++..|.++++|+.|+|++|+|+.+++..|  +++|+.|+|
T Consensus        12 ~v~~~~~n~l~~ip~--l~--~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH--LP--GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             CEECCSSCCCTTTTT--SC--SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             EEEcCCCCCCCccCC--CC--CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            4688888 9999998  55  789999999996 99999999999999999999999999999998887  999999999


Q ss_pred             CCCcccccCccccCCCCCCCEEEccCCcceeeC
Q psy14765        134 AHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY  166 (269)
Q Consensus       134 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~  166 (269)
                      ++|+|+++++..|..+. |+.|+|.+|.+....
T Consensus        88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c  119 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCSC  119 (347)
T ss_dssp             CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCG
T ss_pred             CCCccceeCHHHcccCC-ceEEEeeCCCccCCC
Confidence            99999999988887776 999999999998653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.50  E-value=9.7e-14  Score=119.67  Aligned_cols=154  Identities=19%  Similarity=0.262  Sum_probs=99.1

Q ss_pred             CCceEEEeecCCcc--------------------ccccccccccC--------CCcccEEEcccccccccchhhhcCCCC
Q psy14765         54 LDTQVLDLSSNNIN--------------------VLQKEIFLQMG--------ITNIQKLYLRKCKLEFVDDRAFRGVTN  105 (269)
Q Consensus        54 ~~l~~L~l~~n~l~--------------------~i~~~~f~~~~--------l~~L~~L~L~~N~i~~~~~~~~~~l~~  105 (269)
                      ++|+.|+|++|+|.                    .|++.+|.  +        +++|+.|++++ .++.|++.+|.++++
T Consensus        49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~--~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~  125 (329)
T 3sb4_A           49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFS--NVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDN  125 (329)
T ss_dssp             TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTE--EEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTT
T ss_pred             ccCeEEecCcceeEEecCccccccccccccccccccCHHHhc--ccccccccccCCCcEEECCc-cccchhHHHhhcCcc
Confidence            45666777766666                    56777777  6        78888888887 788888888888888


Q ss_pred             CCEEEcCCCCCCCcCCccC-------------------------------------------------------------
Q psy14765        106 MDELDLSDNLLSTVPSLIY-------------------------------------------------------------  124 (269)
Q Consensus       106 L~~L~L~~N~l~~l~~~~~-------------------------------------------------------------  124 (269)
                      |+.+++++|.+..++..+|                                                             
T Consensus       126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~  205 (329)
T 3sb4_A          126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN  205 (329)
T ss_dssp             CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred             cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence            8888888887655555443                                                             


Q ss_pred             -------------------ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCC-eeEEee
Q psy14765        125 -------------------IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGS-NLTLDC  184 (269)
Q Consensus       125 -------------------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~-~l~l~~  184 (269)
                                         +++|+.+++++|.++.++..+|.++.+|+.+++.+| ++.|+..+|..... ++ .+.+..
T Consensus       206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~-L~~~l~l~~  283 (329)
T 3sb4_A          206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGR-LAGTLELPA  283 (329)
T ss_dssp             EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT-CCEEEEECT
T ss_pred             eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChh-ccEEEEEcc
Confidence                               235666667766777777777777777777777666 66677777766664 45 666655


Q ss_pred             ccccCCCccccceecccccccccccCccccc
Q psy14765        185 RVQSATPCRIMWSINRKIYDHVNWNSNKINI  215 (269)
Q Consensus       185 n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~  215 (269)
                      + +..++...  +.++..++.+.+.+|.+..
T Consensus       284 ~-l~~I~~~a--F~~c~~L~~l~l~~n~i~~  311 (329)
T 3sb4_A          284 S-VTAIEFGA--FMGCDNLRYVLATGDKITT  311 (329)
T ss_dssp             T-CCEECTTT--TTTCTTEEEEEECSSCCCE
T ss_pred             c-ceEEchhh--hhCCccCCEEEeCCCccCc
Confidence            2 23333222  2223335555555555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.49  E-value=5.9e-14  Score=129.67  Aligned_cols=107  Identities=15%  Similarity=0.211  Sum_probs=68.6

Q ss_pred             cccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccC
Q psy14765         81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSN  159 (269)
Q Consensus        81 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~  159 (269)
                      .|+.|++++|+|++++.  |..+++|+.|+|++|.|+.+|..+. +++|+.|+|++|.|++++  .++.+++|+.|+|++
T Consensus       442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCN  517 (567)
T ss_dssp             TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCS
T ss_pred             CceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCC
Confidence            46666666666666643  6666666666666666666666555 666666666666666653  466666666666666


Q ss_pred             CcceeeC-cccccccccCCCeeEEeeccccCCCc
Q psy14765        160 CQIHTIY-SEAFYVMVLPGSNLTLDCRVQSATPC  192 (269)
Q Consensus       160 N~l~~~~-~~~~~~l~~~l~~l~l~~n~~~~~~~  192 (269)
                      |+|++++ +..+..++. ++.+.+++|.+...++
T Consensus       518 N~l~~~~~p~~l~~l~~-L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPR-LVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             SCCCSSSTTGGGGGCTT-CCEEECTTSGGGGSSS
T ss_pred             CCCCCCCCcHHHhcCCC-CCEEEecCCcCCCCcc
Confidence            6666664 555555554 5666666666655554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.48  E-value=3.7e-13  Score=115.97  Aligned_cols=154  Identities=16%  Similarity=0.155  Sum_probs=100.1

Q ss_pred             CcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEccccc----ccccchhhh-------
Q psy14765         35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK----LEFVDDRAF-------  100 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~----i~~~~~~~~-------  100 (269)
                      -+.++..+ .++.|++..+   ++|+.+++++|.+..|++.+|.  ++.++..+.+..+.    ...+...+|       
T Consensus       103 L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~--~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~  179 (329)
T 3sb4_A          103 LEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALA--DSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE  179 (329)
T ss_dssp             CCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSC--TTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred             CcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhc--CCCceEEecCcchhhhhccccccccccccccccc
Confidence            56777777 7888887776   6788888888888877777776  55555555443311    011111111       


Q ss_pred             -------------------------------------------cCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCC
Q psy14765        101 -------------------------------------------RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAH  135 (269)
Q Consensus       101 -------------------------------------------~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~  135 (269)
                                                                 ..+++|+.+++++|+++.|+..+|  +.+|+.+++.+
T Consensus       180 ~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~  259 (329)
T 3sb4_A          180 TTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH  259 (329)
T ss_dssp             EEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT
T ss_pred             eeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc
Confidence                                                       015667777777777777777777  67777777777


Q ss_pred             CcccccCccccCCCCCCC-EEEccCCcceeeCcccccccccCCCeeEEeeccccCCCccc
Q psy14765        136 NPINQISSYSFQSTPGIR-YIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRI  194 (269)
Q Consensus       136 N~i~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~~  194 (269)
                      | ++.+...+|.++.+|+ .+++.+ .++.|++.+|..... ++.+.+..|.+..++...
T Consensus       260 n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~-L~~l~l~~n~i~~I~~~a  316 (329)
T 3sb4_A          260 N-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN-LRYVLATGDKITTLGDEL  316 (329)
T ss_dssp             T-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT-EEEEEECSSCCCEECTTT
T ss_pred             c-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc-CCEEEeCCCccCccchhh
Confidence            6 7777777777777777 777766 677777777776665 566777666655554433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.45  E-value=2.8e-13  Score=125.15  Aligned_cols=118  Identities=19%  Similarity=0.282  Sum_probs=100.9

Q ss_pred             CCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCc
Q psy14765         43 RNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSL  122 (269)
Q Consensus        43 ~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~  122 (269)
                      |.++.+|.   ..++.|++++|.|+.+|.  |.  .+++|+.|++++|+|+.++ ..|.++++|+.|+|++|.|+.+| .
T Consensus       433 n~i~~l~~---~~L~~L~Ls~n~l~~lp~--~~--~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp-~  503 (567)
T 1dce_A          433 NSVLKMEY---ADVRVLHLAHKDLTVLCH--LE--QLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENVD-G  503 (567)
T ss_dssp             HHHHHHHH---TTCSEEECTTSCCSSCCC--GG--GGTTCCEEECCSSCCCCCC-GGGGGCTTCCEEECCSSCCCCCG-G
T ss_pred             ccccccCc---cCceEEEecCCCCCCCcC--cc--ccccCcEeecCcccccccc-hhhhcCCCCCEEECCCCCCCCCc-c
Confidence            34444443   358899999999999886  65  8899999999999999875 47899999999999999999988 4


Q ss_pred             cC-ccccceeecCCCcccccC-ccccCCCCCCCEEEccCCcceeeCccc
Q psy14765        123 IY-IPYLKSINLAHNPINQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEA  169 (269)
Q Consensus       123 ~~-l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~  169 (269)
                      +. +++|+.|+|++|.|+++. |..++.+++|+.|+|++|.++++++..
T Consensus       504 l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence            55 999999999999999997 778999999999999999999987643

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.41  E-value=5.8e-14  Score=122.64  Aligned_cols=102  Identities=22%  Similarity=0.297  Sum_probs=48.7

Q ss_pred             cEEEcCCCCCcccCC----CC---CC-CceEEEeecCCccccccccccccCC-----CcccEEEcccccccccchhhh--
Q psy14765         36 RTVECIDRNFYTIPE----GI---DL-DTQVLDLSSNNINVLQKEIFLQMGI-----TNIQKLYLRKCKLEFVDDRAF--  100 (269)
Q Consensus        36 ~~v~c~~~~l~~ip~----~~---~~-~l~~L~l~~n~l~~i~~~~f~~~~l-----~~L~~L~L~~N~i~~~~~~~~--  100 (269)
                      +.++.+++.+..++.    ..   .+ +++.|++++|.++......|.  .+     ++|++|++++|+++...+..+  
T Consensus        25 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~--~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           25 TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV--QILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHH--HHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             eEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHH--HHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            455566655555443    11   12 555566666655554444333  22     555555555555555444322  


Q ss_pred             --cCC-CCCCEEEcCCCCCCCcCCccC-------ccccceeecCCCccc
Q psy14765        101 --RGV-TNMDELDLSDNLLSTVPSLIY-------IPYLKSINLAHNPIN  139 (269)
Q Consensus       101 --~~l-~~L~~L~L~~N~l~~l~~~~~-------l~~L~~L~L~~N~i~  139 (269)
                        ..+ ++|++|++++|.++..+...+       ..+|+.|++++|.++
T Consensus       103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A          103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred             HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence              222 455555555555554433221       024555555555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.40  E-value=3.6e-14  Score=123.95  Aligned_cols=176  Identities=19%  Similarity=0.210  Sum_probs=129.0

Q ss_pred             EEcCCCCCcc-cCCC--CCCCceEEEeecCCcccccc----ccccccCCC-cccEEEcccccccccchhhhcCC-----C
Q psy14765         38 VECIDRNFYT-IPEG--IDLDTQVLDLSSNNINVLQK----EIFLQMGIT-NIQKLYLRKCKLEFVDDRAFRGV-----T  104 (269)
Q Consensus        38 v~c~~~~l~~-ip~~--~~~~l~~L~l~~n~l~~i~~----~~f~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l-----~  104 (269)
                      ...+.+.++. +|..  .+.+++.|++++|.++.++.    ..|.  .++ +|++|++++|+|+...+..+..+     +
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~--~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFA--NTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH--TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHH--hCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            4556777764 3332  23679999999999999887    7776  788 89999999999999888777765     8


Q ss_pred             CCCEEEcCCCCCCCcCCccC------c-cccceeecCCCcccccCcccc----CC-CCCCCEEEccCCcceeeCcccc--
Q psy14765        105 NMDELDLSDNLLSTVPSLIY------I-PYLKSINLAHNPINQISSYSF----QS-TPGIRYIDMSNCQIHTIYSEAF--  170 (269)
Q Consensus       105 ~L~~L~L~~N~l~~l~~~~~------l-~~L~~L~L~~N~i~~~~~~~~----~~-l~~L~~L~L~~N~l~~~~~~~~--  170 (269)
                      +|++|++++|.++..+...+      . ++|+.|++++|+++......+    .. .++|++|+|++|.++......+  
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            99999999999997655433      2 799999999999998876543    34 3689999999999986544333  


Q ss_pred             --cccccCCCeeEEeeccccCCCccccc-e-ecc-cccccccccCccccc
Q psy14765        171 --YVMVLPGSNLTLDCRVQSATPCRIMW-S-INR-KIYDHVNWNSNKINI  215 (269)
Q Consensus       171 --~~l~~~l~~l~l~~n~~~~~~~~~~~-~-~~~-~~l~~l~~~~n~~~~  215 (269)
                        ...+..++.+.++.|.++...+.... . ... ..++.+++++|.++.
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence              33333478888888887665532111 1 111 247777888887754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.38  E-value=1.6e-13  Score=118.14  Aligned_cols=170  Identities=16%  Similarity=0.107  Sum_probs=104.0

Q ss_pred             CcEEEcCCCCCcccCCCCC--CCceEEEeecCCcccc-ccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765         35 KRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVL-QKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL  111 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~--~~l~~L~l~~n~l~~i-~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  111 (269)
                      -+.++++++.+...+..+.  ++++.|++++|.++.. .+..+.  .+++|++|++++|.++...+..+..+++|++|++
T Consensus        72 l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           72 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS--QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHT--TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHh--hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            4566666666666555444  6788888888887742 333444  6788888888888877766677777888888888


Q ss_pred             CCC-CCCC--cCCccC-ccccceeecCCC-ccccc-CccccCCCC-CCCEEEccCCc--ce--eeCcccccccccCCCee
Q psy14765        112 SDN-LLST--VPSLIY-IPYLKSINLAHN-PINQI-SSYSFQSTP-GIRYIDMSNCQ--IH--TIYSEAFYVMVLPGSNL  180 (269)
Q Consensus       112 ~~N-~l~~--l~~~~~-l~~L~~L~L~~N-~i~~~-~~~~~~~l~-~L~~L~L~~N~--l~--~~~~~~~~~l~~~l~~l  180 (269)
                      ++| .++.  ++.... +++|+.|++++| .+++. .+..+..++ +|+.|++++|.  ++  .++ ..+..++. ++.+
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~-~~~~~~~~-L~~L  227 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS-TLVRRCPN-LVHL  227 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH-HHHHHCTT-CSEE
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH-HHHhhCCC-CCEE
Confidence            888 5663  443333 777788888777 77653 133455666 77777777773  33  222 23333443 5666


Q ss_pred             EEeecc-ccC-CCccccceecccccccccccCc
Q psy14765        181 TLDCRV-QSA-TPCRIMWSINRKIYDHVNWNSN  211 (269)
Q Consensus       181 ~l~~n~-~~~-~~~~~~~~~~~~~l~~l~~~~n  211 (269)
                      .+++|. +.. .+.   .+.....++.+++.+|
T Consensus       228 ~l~~~~~l~~~~~~---~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          228 DLSDSVMLKNDCFQ---EFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             ECTTCTTCCGGGGG---GGGGCTTCCEEECTTC
T ss_pred             eCCCCCcCCHHHHH---HHhCCCCCCEeeCCCC
Confidence            666665 222 222   2222234566666555

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.36  E-value=3.5e-15  Score=119.41  Aligned_cols=117  Identities=16%  Similarity=0.228  Sum_probs=76.4

Q ss_pred             CCcccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCC
Q psy14765         44 NFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS  121 (269)
Q Consensus        44 ~l~~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~  121 (269)
                      .++.+|..+.  ++++.|++++|.++.++  .|.  ++++|+.|++++|+|+.++. .+..+++|+.|++++|+++.++ 
T Consensus        36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~--~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l~-  109 (198)
T 1ds9_A           36 PIEKMDATLSTLKACKHLALSTNNIEKIS--SLS--GMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLS-  109 (198)
T ss_dssp             TCCCCHHHHHHTTTCSEEECSEEEESCCC--CHH--HHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCCHH-
T ss_pred             cHhhhhHHHhcCCCCCEEECCCCCCcccc--ccc--cCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCcCC-
Confidence            4444443332  57777777777777766  444  66777777777777776643 4555667777777777777765 


Q ss_pred             ccC-ccccceeecCCCcccccCc-cccCCCCCCCEEEccCCcceeeC
Q psy14765        122 LIY-IPYLKSINLAHNPINQISS-YSFQSTPGIRYIDMSNCQIHTIY  166 (269)
Q Consensus       122 ~~~-l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~  166 (269)
                      ... +++|+.|++++|+++.++. ..+..+++|+.|++++|.+++..
T Consensus       110 ~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~  156 (198)
T 1ds9_A          110 GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred             ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence            233 7777777777777776643 35667777777777777776553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.32  E-value=2.8e-13  Score=116.61  Aligned_cols=173  Identities=13%  Similarity=0.145  Sum_probs=129.6

Q ss_pred             CCcEEEcCCCCCcc--cCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccc-ccccc-chhhhcCCCCCC
Q psy14765         34 GKRTVECIDRNFYT--IPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFV-DDRAFRGVTNMD  107 (269)
Q Consensus        34 ~~~~v~c~~~~l~~--ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N-~i~~~-~~~~~~~l~~L~  107 (269)
                      .-+.++.+++.+..  +|..+.  ++|+.|++++|.++...+..+.  .+++|++|++++| .++.. .+..+..+++|+
T Consensus        94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~--~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~  171 (336)
T 2ast_B           94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA--KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  171 (336)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT--TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh--cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence            36889999998764  554333  7999999999999865566666  7899999999999 68753 345578899999


Q ss_pred             EEEcCCC-CCCC--cCCccC-cc-ccceeecCCCc--cc--ccCccccCCCCCCCEEEccCCc-ceeeCcccccccccCC
Q psy14765        108 ELDLSDN-LLST--VPSLIY-IP-YLKSINLAHNP--IN--QISSYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYVMVLPG  177 (269)
Q Consensus       108 ~L~L~~N-~l~~--l~~~~~-l~-~L~~L~L~~N~--i~--~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~~l  177 (269)
                      +|++++| .++.  ++.... ++ +|+.|++++|.  ++  ++ +..+..+++|+.|++++|. ++......+..++. +
T Consensus       172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~-L  249 (336)
T 2ast_B          172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL-STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY-L  249 (336)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHH-HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT-C
T ss_pred             EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHH-HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC-C
Confidence            9999999 8884  454444 88 99999999994  43  34 4456788999999999998 66655556777765 7


Q ss_pred             CeeEEeeccccCCCccccceecccccccccccCc
Q psy14765        178 SNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSN  211 (269)
Q Consensus       178 ~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n  211 (269)
                      +.+.++.|. ...+..+..+.+...++.+++.++
T Consensus       250 ~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          250 QHLSLSRCY-DIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CEEECTTCT-TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CEeeCCCCC-CCCHHHHHHHhcCCCCCEEeccCc
Confidence            999998876 333333334445556778887777

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.31  E-value=1.3e-13  Score=121.33  Aligned_cols=132  Identities=14%  Similarity=0.135  Sum_probs=66.7

Q ss_pred             CCceEEEeecCCccc----cccccccccCCCcccEEEcccccccccchhhhcC----C---------CCCCEEEcCCCCC
Q psy14765         54 LDTQVLDLSSNNINV----LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG----V---------TNMDELDLSDNLL  116 (269)
Q Consensus        54 ~~l~~L~l~~n~l~~----i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~----l---------~~L~~L~L~~N~l  116 (269)
                      ++|+.|++++|.++.    ..+..+.  .+++|++|++++|.|+...+..+..    +         ++|++|++++|++
T Consensus        94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l  171 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGPTAQEPLIDFLS--KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  171 (386)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHH--HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             CcccEEECCCCcCCHHHHHHHHHHHH--hCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence            566666666666664    1222233  4566666666666665443333322    2         5666666666666


Q ss_pred             C--CcCC---ccC-ccccceeecCCCccc--c---cCccccCCCCCCCEEEccCCcce----eeCcccccccccCCCeeE
Q psy14765        117 S--TVPS---LIY-IPYLKSINLAHNPIN--Q---ISSYSFQSTPGIRYIDMSNCQIH----TIYSEAFYVMVLPGSNLT  181 (269)
Q Consensus       117 ~--~l~~---~~~-l~~L~~L~L~~N~i~--~---~~~~~~~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~~l~~l~  181 (269)
                      +  .++.   ... +++|+.|++++|+++  +   +.+..+..+++|+.|+|++|.++    ...+..+..++. ++.+.
T Consensus       172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~-L~~L~  250 (386)
T 2ca6_A          172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN-LRELG  250 (386)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT-CCEEE
T ss_pred             CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC-cCEEE
Confidence            5  2221   111 556666666666655  2   22324555566666666666653    111123333333 45555


Q ss_pred             Eeecccc
Q psy14765        182 LDCRVQS  188 (269)
Q Consensus       182 l~~n~~~  188 (269)
                      +++|.++
T Consensus       251 L~~n~i~  257 (386)
T 2ca6_A          251 LNDCLLS  257 (386)
T ss_dssp             CTTCCCC
T ss_pred             CCCCCCc
Confidence            5555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=99.30  E-value=4.8e-12  Score=94.32  Aligned_cols=66  Identities=26%  Similarity=0.515  Sum_probs=60.4

Q ss_pred             CCCCCCeEeeeCCCcEEEcCCCCCc--ccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEccccccc
Q psy14765         22 SCPLGCSCKWKAGKRTVECIDRNFY--TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE   93 (269)
Q Consensus        22 ~cp~~C~C~~~~~~~~v~c~~~~l~--~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~   93 (269)
                      +||..|.|.    ..+|+|++++|+  .+|.+++.+++.|+|++|+|+.++++.|.  ++++|+.|+|++|.+.
T Consensus         1 ~CP~~C~C~----~~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~--~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A            1 PCPAPCSCA----GTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLD--ALPALRTAHLGANPWR   68 (130)
T ss_dssp             CCCTTCEEE----TTEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGG--GCTTCCEEECCSSCCB
T ss_pred             CcCCCCEEc----CCEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhh--hccccCEEEecCCCee
Confidence            599999998    689999999999  99999999999999999999999999998  8888999888888764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.29  E-value=1e-14  Score=116.67  Aligned_cols=129  Identities=18%  Similarity=0.236  Sum_probs=106.8

Q ss_pred             CCceEEEeecC--CccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC-ccccce
Q psy14765         54 LDTQVLDLSSN--NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKS  130 (269)
Q Consensus        54 ~~l~~L~l~~n--~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~-l~~L~~  130 (269)
                      -.++...+.+.  .++.++. .|.  .+++|++|++++|.|+.++  .+..+++|+.|++++|.++.+|.... +++|+.
T Consensus        23 l~l~~~~l~~~~~~l~~l~~-~~~--~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~   97 (198)
T 1ds9_A           23 TEAEKVELHGMIPPIEKMDA-TLS--TLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEE   97 (198)
T ss_dssp             TTCSEEECCBCCTTCCCCHH-HHH--HTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSE
T ss_pred             cchheeEeccccCcHhhhhH-HHh--cCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCE
Confidence            35555666554  5666666 455  7899999999999999986  78899999999999999999987555 899999


Q ss_pred             eecCCCcccccCccccCCCCCCCEEEccCCcceeeCc-ccccccccCCCeeEEeeccccCC
Q psy14765        131 INLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYS-EAFYVMVLPGSNLTLDCRVQSAT  190 (269)
Q Consensus       131 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~~l~~l~l~~n~~~~~  190 (269)
                      |++++|++++++  .+..+++|+.|++++|+++.++. ..+..++. ++.+.+++|.+...
T Consensus        98 L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~-L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           98 LWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDK-LEDLLLAGNPLYND  155 (198)
T ss_dssp             EEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTT-CSEEEECSCHHHHH
T ss_pred             EECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCC-CCEEEecCCccccc
Confidence            999999999985  48888999999999999998765 56666665 79999999987554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.29  E-value=2.7e-13  Score=119.27  Aligned_cols=40  Identities=15%  Similarity=0.063  Sum_probs=19.5

Q ss_pred             CCCcccEEEcccccccc----cchhhhcCCCCCCEEEcCCCCCC
Q psy14765         78 GITNIQKLYLRKCKLEF----VDDRAFRGVTNMDELDLSDNLLS  117 (269)
Q Consensus        78 ~l~~L~~L~L~~N~i~~----~~~~~~~~l~~L~~L~L~~N~l~  117 (269)
                      .+++|++|++++|.|+.    ..+..+..+++|++|+|++|.++
T Consensus        92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A           92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence            34555555555555544    12334444555555555555554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.26  E-value=4.9e-11  Score=105.56  Aligned_cols=141  Identities=16%  Similarity=0.250  Sum_probs=91.6

Q ss_pred             CcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765         35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL  111 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  111 (269)
                      -+.+...+ .++.|+...+   .+|+.+++.+|.++.|+..+|.   .++|+.+.+.+ .++.|...+|.++++|+.+++
T Consensus       159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~---~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV---YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT---TCCCSEEECCT-TCCEECTTTTTTCTTCCCEEC
T ss_pred             ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe---ecccCEEEeCC-chheehhhHhhCCCCCCEEec
Confidence            45566554 6666766665   5677777777777777777773   46777777764 377777777777777777777


Q ss_pred             CCCCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcce-----eeCcccccccccCCCeeEEe
Q psy14765        112 SDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIH-----TIYSEAFYVMVLPGSNLTLD  183 (269)
Q Consensus       112 ~~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~~l~~l~l~  183 (269)
                      ..| ++.++..+| -.+|+.+.+ .+.++.+...+|.++++|+.+++.+|.+.     .++...|..... ++.+.+.
T Consensus       234 ~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~-L~~l~l~  308 (401)
T 4fdw_A          234 PEN-VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK-LARFEIP  308 (401)
T ss_dssp             CTT-CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT-CCEECCC
T ss_pred             CCC-ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc-CCeEEeC
Confidence            653 566666666 556666666 34566666666666666666666665554     566666665554 4555555

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.25  E-value=1.5e-10  Score=102.52  Aligned_cols=143  Identities=22%  Similarity=0.259  Sum_probs=99.6

Q ss_pred             CcEEEcCCCCCcccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcC
Q psy14765         35 KRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS  112 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~  112 (269)
                      -+.+...++ ++.|+...+  .+|+.+.+.. .++.|...+|.  ++++|+.+++++|+++.++..+|. ..+|+.+.+.
T Consensus       137 L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~--~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp  211 (401)
T 4fdw_A          137 IAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFY--YCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP  211 (401)
T ss_dssp             CSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTT--TCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred             ccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhh--CcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence            455665544 666776665  4677777764 67777777777  777777777777777777777776 4677777776


Q ss_pred             CCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccc
Q psy14765        113 DNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQ  187 (269)
Q Consensus       113 ~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~  187 (269)
                      . .++.|+..+|  +++|+.+.+..| ++.+...+|.+ .+|+.+.+ .+.++.++..+|..... ++.+.+..+..
T Consensus       212 ~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~-L~~l~l~~~~~  283 (401)
T 4fdw_A          212 V-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPE-LAEVTTYGSTF  283 (401)
T ss_dssp             T-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTT-CCEEEEESSCC
T ss_pred             C-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCC-CCEEEeCCccc
Confidence            3 3777777777  677777777764 66777777777 67777777 45577777777777665 67777766554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.14  E-value=1.2e-12  Score=117.37  Aligned_cols=151  Identities=11%  Similarity=0.084  Sum_probs=82.0

Q ss_pred             CcEEEcCCCCCcccCC-CC-------CCCceEEEeecCCccccc----cccccccCCCcccEEEcccccccccc-----h
Q psy14765         35 KRTVECIDRNFYTIPE-GI-------DLDTQVLDLSSNNINVLQ----KEIFLQMGITNIQKLYLRKCKLEFVD-----D   97 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~-~~-------~~~l~~L~l~~n~l~~i~----~~~f~~~~l~~L~~L~L~~N~i~~~~-----~   97 (269)
                      -+.++.+++.+..... .+       .++++.|++++|.++...    +..+.  .+++|+.|++++|.++...     +
T Consensus       172 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~  249 (461)
T 1z7x_W          172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA--SKASLRELALGSNKLGDVGMAELCP  249 (461)
T ss_dssp             CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH--HCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred             CCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH--hCCCccEEeccCCcCChHHHHHHHH
Confidence            4677777776654211 11       236777777777776532    22333  4667777777777766533     2


Q ss_pred             hhhcCCCCCCEEEcCCCCCCC-----cCCccC-ccccceeecCCCcccccCccccC-----CCCCCCEEEccCCcceeeC
Q psy14765         98 RAFRGVTNMDELDLSDNLLST-----VPSLIY-IPYLKSINLAHNPINQISSYSFQ-----STPGIRYIDMSNCQIHTIY  166 (269)
Q Consensus        98 ~~~~~l~~L~~L~L~~N~l~~-----l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~  166 (269)
                      ..+..+++|++|++++|.++.     ++.... +++|+.|++++|.++......+.     ..++|+.|++++|.++...
T Consensus       250 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  329 (461)
T 1z7x_W          250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC  329 (461)
T ss_dssp             HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred             HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH
Confidence            223346677777777777664     333333 56677777777766543222221     2246666666666665542


Q ss_pred             cc----cccccccCCCeeEEeecccc
Q psy14765        167 SE----AFYVMVLPGSNLTLDCRVQS  188 (269)
Q Consensus       167 ~~----~~~~l~~~l~~l~l~~n~~~  188 (269)
                      ..    .+...+. ++.+++++|.++
T Consensus       330 ~~~l~~~l~~~~~-L~~L~Ls~n~i~  354 (461)
T 1z7x_W          330 CSHFSSVLAQNRF-LLELQISNNRLE  354 (461)
T ss_dssp             HHHHHHHHHHCSS-CCEEECCSSBCH
T ss_pred             HHHHHHHHhhCCC-ccEEEccCCccc
Confidence            21    1222232 456666666544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.05  E-value=2e-11  Score=109.40  Aligned_cols=178  Identities=12%  Similarity=0.170  Sum_probs=117.5

Q ss_pred             CcEEEcCCCCCcccCCC--C--CCCceEEEeecCCccccc----cccccccCCCcccEEEcccccccccchhhh-cCCC-
Q psy14765         35 KRTVECIDRNFYTIPEG--I--DLDTQVLDLSSNNINVLQ----KEIFLQMGITNIQKLYLRKCKLEFVDDRAF-RGVT-  104 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~--~--~~~l~~L~l~~n~l~~i~----~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~-~~l~-  104 (269)
                      -+.++.+++.++..+..  +  .++++.|++++|.++...    +..+.  .+++|++|++++|.++......+ ..++ 
T Consensus         5 l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALR--VNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHH--TCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHH--hCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            35678888887664422  1  178999999999988432    23344  67889999999999887554333 3455 


Q ss_pred             ---CCCEEEcCCCCCCC-----cCCccC-ccccceeecCCCcccccCccc-----cCCCCCCCEEEccCCcceeeCc---
Q psy14765        105 ---NMDELDLSDNLLST-----VPSLIY-IPYLKSINLAHNPINQISSYS-----FQSTPGIRYIDMSNCQIHTIYS---  167 (269)
Q Consensus       105 ---~L~~L~L~~N~l~~-----l~~~~~-l~~L~~L~L~~N~i~~~~~~~-----~~~l~~L~~L~L~~N~l~~~~~---  167 (269)
                         +|++|++++|.++.     ++.... +++|+.|++++|.++......     +...++|+.|++++|.++....   
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               69999999999884     343333 889999999999987543322     2335679999999998887542   


Q ss_pred             -ccccccccCCCeeEEeeccccCCCcccc-cee--cccccccccccCccccc
Q psy14765        168 -EAFYVMVLPGSNLTLDCRVQSATPCRIM-WSI--NRKIYDHVNWNSNKINI  215 (269)
Q Consensus       168 -~~~~~l~~~l~~l~l~~n~~~~~~~~~~-~~~--~~~~l~~l~~~~n~~~~  215 (269)
                       ..+...+. ++.+.+++|.++....... ...  ....++.+++.+|.+..
T Consensus       163 ~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  213 (461)
T 1z7x_W          163 ASVLRAKPD-FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS  213 (461)
T ss_dssp             HHHHHHCTT-CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred             HHHHhhCCC-CCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence             23333443 7888888887654322111 000  11247788888887754

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.86  E-value=2.3e-10  Score=100.25  Aligned_cols=108  Identities=12%  Similarity=0.126  Sum_probs=45.9

Q ss_pred             CceEEEeecCCccccccc-cccccCCCcccEEEcccccccccchhhh-----cCCCCCCEEEcCCCCCCCcC-----Ccc
Q psy14765         55 DTQVLDLSSNNINVLQKE-IFLQMGITNIQKLYLRKCKLEFVDDRAF-----RGVTNMDELDLSDNLLSTVP-----SLI  123 (269)
Q Consensus        55 ~l~~L~l~~n~l~~i~~~-~f~~~~l~~L~~L~L~~N~i~~~~~~~~-----~~l~~L~~L~L~~N~l~~l~-----~~~  123 (269)
                      +++.|++++|.++..... .+.  .+++|+.|+|++|.|+......+     ...++|+.|+|++|.|+...     ...
T Consensus       102 ~L~~L~Ls~n~l~~~~~~~l~~--~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L  179 (372)
T 3un9_A          102 ALDEVNLASCQLDPAGLRTLLP--VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL  179 (372)
T ss_dssp             CEEEEECTTCCCCHHHHHHTHH--HHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred             CceEEEecCCCCCHHHHHHHHH--HHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence            455555555555422111 111  23445555555555544333222     12344555555555544211     111


Q ss_pred             C-ccccceeecCCCcccccC----ccccCCCCCCCEEEccCCccee
Q psy14765        124 Y-IPYLKSINLAHNPINQIS----SYSFQSTPGIRYIDMSNCQIHT  164 (269)
Q Consensus       124 ~-l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~L~~N~l~~  164 (269)
                      . .++|++|+|++|.|+...    ...+...++|+.|+|++|.|+.
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            1 344555555555544321    1223333445555555555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.84  E-value=7.4e-11  Score=103.40  Aligned_cols=161  Identities=11%  Similarity=0.116  Sum_probs=112.7

Q ss_pred             CCceEEEeecCCcccccccccccc---CCCcccEEEcccccccccchhhh-cCCCCCCEEEcCCCCCCCcCCccC-----
Q psy14765         54 LDTQVLDLSSNNINVLQKEIFLQM---GITNIQKLYLRKCKLEFVDDRAF-RGVTNMDELDLSDNLLSTVPSLIY-----  124 (269)
Q Consensus        54 ~~l~~L~l~~n~l~~i~~~~f~~~---~l~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~-----  124 (269)
                      +.++.|++++|.++......+...   ..++|+.|+|++|.|+......+ ..+++|+.|+|++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            689999999999987655544311   22689999999999976544333 346789999999999985433222     


Q ss_pred             --ccccceeecCCCcccccCc----cccCCCCCCCEEEccCCcceeeCc----ccccccccCCCeeEEeeccccCCCccc
Q psy14765        125 --IPYLKSINLAHNPINQISS----YSFQSTPGIRYIDMSNCQIHTIYS----EAFYVMVLPGSNLTLDCRVQSATPCRI  194 (269)
Q Consensus       125 --l~~L~~L~L~~N~i~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~~l~~l~l~~n~~~~~~~~~  194 (269)
                        .++|+.|+|++|.|+....    ..+...++|++|+|++|.|+....    +.+.... .++.+++++|.++...+..
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~-~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR-QLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS-CCCEEECCSSCCCHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC-CcCeEECCCCCCCHHHHHH
Confidence              4779999999999976432    234677899999999999986542    2333343 3799999999876533211


Q ss_pred             c--ceecccccccccccCccccc
Q psy14765        195 M--WSINRKIYDHVNWNSNKINI  215 (269)
Q Consensus       195 ~--~~~~~~~l~~l~~~~n~~~~  215 (269)
                      .  .+.....++.+++.+|.++.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCH
Confidence            1  11123448888999998763

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.60  E-value=2.2e-07  Score=81.11  Aligned_cols=124  Identities=15%  Similarity=0.268  Sum_probs=84.9

Q ss_pred             CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--cccccee
Q psy14765         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSI  131 (269)
Q Consensus        54 ~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L  131 (269)
                      ..++.+.+.. .+..+...+|.  ++..|+.+.+..+ ++.+...+|.++.+|+.+.+.. .+..++..+|  +.+|+.+
T Consensus       217 ~~l~~i~~~~-~~~~i~~~~f~--~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i  291 (379)
T 4h09_A          217 KNLKKITITS-GVTTLGDGAFY--GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKV  291 (379)
T ss_dssp             SSCSEEECCT-TCCEECTTTTT--TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEE
T ss_pred             cccceeeecc-ceeEEcccccc--CCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccc
Confidence            4566666643 36667777776  7777777777654 6777777777777777777754 3667777777  6777777


Q ss_pred             ecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEee
Q psy14765        132 NLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDC  184 (269)
Q Consensus       132 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~  184 (269)
                      .+.++.++.+...+|.++.+|+.+.|..+ ++.|...+|..... ++.+.+..
T Consensus       292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~-L~~i~ip~  342 (379)
T 4h09_A          292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA-LSTISYPK  342 (379)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT-CCCCCCCT
T ss_pred             cccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC-CCEEEECC
Confidence            77777777777777777777777777543 77777777766543 45555543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.42  E-value=1.1e-07  Score=87.64  Aligned_cols=126  Identities=10%  Similarity=0.090  Sum_probs=75.4

Q ss_pred             CCceEEEeecCCccccccccccccC-CCc-ccEEEccccc-ccccc-hhhhcCCCCCCEEEcCCCCCCCcCCcc-----C
Q psy14765         54 LDTQVLDLSSNNINVLQKEIFLQMG-ITN-IQKLYLRKCK-LEFVD-DRAFRGVTNMDELDLSDNLLSTVPSLI-----Y  124 (269)
Q Consensus        54 ~~l~~L~l~~n~l~~i~~~~f~~~~-l~~-L~~L~L~~N~-i~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~~~-----~  124 (269)
                      ++|+.|++++|.++......+.  . +++ |++|+++++. ++... +.....+++|++|+|++|.++.....+     .
T Consensus       112 ~~L~~L~L~~~~i~~~~~~~l~--~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          112 RQLKSVHFRRMIVSDLDLDRLA--KARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHH--HHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             CCCCeEEeeccEecHHHHHHHH--HhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            5788888888877644333332  2 234 8888887765 21111 112236778888888888765443221     1


Q ss_pred             -ccccceeecCCCcccccCc----cccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEe
Q psy14765        125 -IPYLKSINLAHNPINQISS----YSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLD  183 (269)
Q Consensus       125 -l~~L~~L~L~~N~i~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~  183 (269)
                       +++|+.|++++|.++++..    ..+.++++|+.|++++|.+.+++ ..+..++. ++.+.+.
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~-L~~L~l~  251 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAAN-LEEFCGG  251 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTT-CCEEEEC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhH-HHhhccc
Confidence             6788888888888764332    23446678888888888777654 33444433 4555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.40  E-value=2.4e-06  Score=74.43  Aligned_cols=114  Identities=18%  Similarity=0.283  Sum_probs=73.5

Q ss_pred             CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--cccccee
Q psy14765         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSI  131 (269)
Q Consensus        54 ~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L  131 (269)
                      ..|+.+.+..+ ++.|...+|.  ++.+|+.+.+.. .++.+...+|.++.+|+.+.+.++.++.|+..+|  +.+|+.+
T Consensus       240 ~~L~~i~lp~~-v~~I~~~aF~--~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i  315 (379)
T 4h09_A          240 KALDEIAIPKN-VTSIGSFLLQ--NCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV  315 (379)
T ss_dssp             SSCCEEEECTT-CCEECTTTTT--TCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred             ccceEEEcCCC-ccEeCccccc--eeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence            45666666544 6666666666  666677766653 3666666667777777777776666776766666  5667777


Q ss_pred             ecCCCcccccCccccCCCCCCCEEEccCCcceeeCccccccc
Q psy14765        132 NLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM  173 (269)
Q Consensus       132 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  173 (269)
                      .+..+ ++.|...+|.++.+|+.+.+..+ ++.|...+|.+.
T Consensus       316 ~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          316 TLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred             EcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence            66543 66666666777667776666543 666666666544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.32  E-value=2.6e-07  Score=76.91  Aligned_cols=86  Identities=14%  Similarity=0.153  Sum_probs=58.6

Q ss_pred             CCCcccE--EEcccccccccc---hhhhcCCCCCCEEEcCCCCCCCcCC--ccC--ccccceeecCCCcccccCc-cccC
Q psy14765         78 GITNIQK--LYLRKCKLEFVD---DRAFRGVTNMDELDLSDNLLSTVPS--LIY--IPYLKSINLAHNPINQISS-YSFQ  147 (269)
Q Consensus        78 ~l~~L~~--L~L~~N~i~~~~---~~~~~~l~~L~~L~L~~N~l~~l~~--~~~--l~~L~~L~L~~N~i~~~~~-~~~~  147 (269)
                      ..+.|..  ++++.|+...+.   +-...++++|+.|+|++|+|+.++.  ..+  +++|+.|+|++|+|+++.. ..+.
T Consensus       139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~  218 (267)
T 3rw6_A          139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK  218 (267)
T ss_dssp             GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT
T ss_pred             CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc
Confidence            3445554  677777655443   2223467888899999998887653  222  8888999999998888722 2333


Q ss_pred             CCCCCCEEEccCCccee
Q psy14765        148 STPGIRYIDMSNCQIHT  164 (269)
Q Consensus       148 ~l~~L~~L~L~~N~l~~  164 (269)
                      .+ +|+.|+|++|.+.+
T Consensus       219 ~l-~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          219 GL-KLEELWLDGNSLCD  234 (267)
T ss_dssp             TS-CCSEEECTTSTTGG
T ss_pred             cC-CcceEEccCCcCcc
Confidence            44 88889999998875

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.25  E-value=5.1e-06  Score=72.90  Aligned_cols=116  Identities=16%  Similarity=0.289  Sum_probs=93.0

Q ss_pred             CCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCccccc
Q psy14765         64 NNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQI  141 (269)
Q Consensus        64 n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~  141 (269)
                      +.++.+...+|.  ++..|+.+.+.++ +..+...+|.++.+|+.+.+. +.++.++..+|  +.+|+.+.+..+ ++.+
T Consensus       251 ~~v~~i~~~aF~--~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I  325 (394)
T 4gt6_A          251 NGVARIETHAFD--SCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQI  325 (394)
T ss_dssp             TTEEEECTTTTT--TCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEE
T ss_pred             CcceEcccceee--ecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEe
Confidence            456777888888  8888998888754 456778888888889998885 56888888888  788999988754 7888


Q ss_pred             CccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeecc
Q psy14765        142 SSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRV  186 (269)
Q Consensus       142 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~  186 (269)
                      ...+|.++.+|+.+.+..+ ++.|...+|..... ++.+.+.++.
T Consensus       326 ~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~-L~~i~~~~~~  368 (394)
T 4gt6_A          326 LDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA-LNNIEYSGSR  368 (394)
T ss_dssp             CTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT-CCEEEESSCH
T ss_pred             hHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC-CCEEEECCce
Confidence            8888989899999888654 88888888888765 6888887654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.25  E-value=1.1e-05  Score=70.84  Aligned_cols=108  Identities=19%  Similarity=0.325  Sum_probs=67.4

Q ss_pred             cccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCcccc
Q psy14765         69 LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSF  146 (269)
Q Consensus        69 i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~  146 (269)
                      +....|.  +...++.+....+.   ++..+|.++.+|+.+.+..+ ++.|+..+|  +.+|+.+++..+ ++.+...+|
T Consensus       267 i~~~~F~--~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF  339 (394)
T 4fs7_A          267 IGGSLFY--NCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSF  339 (394)
T ss_dssp             ECSCTTT--TCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTT
T ss_pred             eeccccc--cccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhc
Confidence            4444444  44444444443322   34455666777777777544 666777777  677777777543 677777777


Q ss_pred             CCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeec
Q psy14765        147 QSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCR  185 (269)
Q Consensus       147 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n  185 (269)
                      .++.+|+.+.+..+ ++.|...+|..... ++.+.+..+
T Consensus       340 ~~c~~L~~i~lp~~-l~~I~~~aF~~C~~-L~~i~lp~~  376 (394)
T 4fs7_A          340 RGCTSLSNINFPLS-LRKIGANAFQGCIN-LKKVELPKR  376 (394)
T ss_dssp             TTCTTCCEECCCTT-CCEECTTTBTTCTT-CCEEEEEGG
T ss_pred             cCCCCCCEEEECcc-ccEehHHHhhCCCC-CCEEEECCC
Confidence            77777777777665 77777777776654 566666544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.25  E-value=4e-06  Score=73.57  Aligned_cols=64  Identities=8%  Similarity=0.186  Sum_probs=38.1

Q ss_pred             CcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcC
Q psy14765         45 FYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS  112 (269)
Q Consensus        45 l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~  112 (269)
                      +++|....+   .+|+.+.+. +.++.|...+|.  ++++|+.+++.++ ++.+...+|.++.+|+.+.+.
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp-~~i~~I~~~aF~--~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p  125 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIP-STVREIGEFAFE--NCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP  125 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECC-TTCCEECTTTTT--TCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             EeEhHHHHhhCCCCceEEEeC-CCccCcchhHhh--CCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence            334544444   356666665 346666666666  6666666666543 666666666666666655544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.24  E-value=5.2e-06  Score=72.89  Aligned_cols=123  Identities=14%  Similarity=0.280  Sum_probs=81.3

Q ss_pred             ccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccC
Q psy14765         82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSN  159 (269)
Q Consensus        82 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~  159 (269)
                      +..+.+. +.++.+...+|.++.+|+.+.+..+ +..+...+|  +..|+.+.+. +.++.+...+|.++.+|+.+.+..
T Consensus       244 ~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~  320 (394)
T 4gt6_A          244 DPAFKIP-NGVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE  320 (394)
T ss_dssp             CSEEECC-TTEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT
T ss_pred             cceEEcC-CcceEcccceeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC
Confidence            4444443 3566777778888888888887654 445777777  7788888875 567777778888888888888865


Q ss_pred             CcceeeCcccccccccCCCeeEEeeccccCCCccccceecccccccccccCcc
Q psy14765        160 CQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNK  212 (269)
Q Consensus       160 N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~  212 (269)
                      + ++.|...+|..... ++.+.+..+. ..+....  +.++..|+.+.+.++.
T Consensus       321 ~-v~~I~~~aF~~C~~-L~~i~ip~sv-~~I~~~a--F~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          321 G-ITQILDDAFAGCEQ-LERIAIPSSV-TKIPESA--FSNCTALNNIEYSGSR  368 (394)
T ss_dssp             T-CCEECTTTTTTCTT-CCEEEECTTC-CBCCGGG--GTTCTTCCEEEESSCH
T ss_pred             c-ccEehHhHhhCCCC-CCEEEECccc-CEEhHhH--hhCCCCCCEEEECCce
Confidence            4 77788888877654 5777776543 3333222  3344446666665554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.22  E-value=2.1e-07  Score=73.26  Aligned_cols=108  Identities=13%  Similarity=0.125  Sum_probs=58.0

Q ss_pred             CCceEEEeecC-Ccccccc----ccccccCCCcccEEEcccccccccc----hhhhcCCCCCCEEEcCCCCCCCc-----
Q psy14765         54 LDTQVLDLSSN-NINVLQK----EIFLQMGITNIQKLYLRKCKLEFVD----DRAFRGVTNMDELDLSDNLLSTV-----  119 (269)
Q Consensus        54 ~~l~~L~l~~n-~l~~i~~----~~f~~~~l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~L~~N~l~~l-----  119 (269)
                      +.++.|++++| .|..-..    ..+.  ..++|++|+|++|.|..-.    ...+...++|++|+|++|.|..-     
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~--~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALK--TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHT--TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHH--hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            45667777776 6653211    1122  3456777777777665422    22333445677777777766632     


Q ss_pred             CCccC-ccccceeec--CCCcccccC----ccccCCCCCCCEEEccCCcce
Q psy14765        120 PSLIY-IPYLKSINL--AHNPINQIS----SYSFQSTPGIRYIDMSNCQIH  163 (269)
Q Consensus       120 ~~~~~-l~~L~~L~L--~~N~i~~~~----~~~~~~l~~L~~L~L~~N~l~  163 (269)
                      ..... .+.|+.|+|  ++|.|+.-.    ...+...+.|+.|+|++|.+.
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            22222 456677777  666665422    122334456667777666654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.16  E-value=9.9e-07  Score=81.25  Aligned_cols=121  Identities=11%  Similarity=0.138  Sum_probs=74.9

Q ss_pred             CcEEEcCCCCCcccCCC-------CCCCceEEEeecCCccccccc----cccccCCCcccEEEcccccccccchhhhcCC
Q psy14765         35 KRTVECIDRNFYTIPEG-------IDLDTQVLDLSSNNINVLQKE----IFLQMGITNIQKLYLRKCKLEFVDDRAFRGV  103 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~-------~~~~l~~L~l~~n~l~~i~~~----~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l  103 (269)
                      -++++.+++.+......       -.++|+.|++++|.++.+...    .+.  ++++|+.|++++|.+.+++ ..+..+
T Consensus       166 L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~~~~l~-~~~~~~  242 (592)
T 3ogk_B          166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR--NCRSLVSVKVGDFEILELV-GFFKAA  242 (592)
T ss_dssp             CSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH--HCTTCCEEECSSCBGGGGH-HHHHHC
T ss_pred             CCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh--hCCCCcEEeccCccHHHHH-HHHhhh
Confidence            57888888876543211       126888999998888744432    233  5788999999988887764 456666


Q ss_pred             CCCCEEEcCCC---------------------------CCCCcCCccC-ccccceeecCCCcccccCc-cccCCCCCCCE
Q psy14765        104 TNMDELDLSDN---------------------------LLSTVPSLIY-IPYLKSINLAHNPINQISS-YSFQSTPGIRY  154 (269)
Q Consensus       104 ~~L~~L~L~~N---------------------------~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~  154 (269)
                      ++|+.|+++..                           ....++.... +++|+.|++++|.++.... ..++.+++|+.
T Consensus       243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~  322 (592)
T 3ogk_B          243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV  322 (592)
T ss_dssp             TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE
T ss_pred             hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE
Confidence            77777766532                           2222333222 6677788887777654322 22455566666


Q ss_pred             EEcc
Q psy14765        155 IDMS  158 (269)
Q Consensus       155 L~L~  158 (269)
                      |+++
T Consensus       323 L~L~  326 (592)
T 3ogk_B          323 LETR  326 (592)
T ss_dssp             EEEE
T ss_pred             Eecc
Confidence            6665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.12  E-value=7.4e-07  Score=74.12  Aligned_cols=63  Identities=27%  Similarity=0.304  Sum_probs=35.5

Q ss_pred             CCCcccEEEcccccccccch--hhhcCCCCCCEEEcCCCCCCCcCCccCcc--ccceeecCCCcccc
Q psy14765         78 GITNIQKLYLRKCKLEFVDD--RAFRGVTNMDELDLSDNLLSTVPSLIYIP--YLKSINLAHNPINQ  140 (269)
Q Consensus        78 ~l~~L~~L~L~~N~i~~~~~--~~~~~l~~L~~L~L~~N~l~~l~~~~~l~--~L~~L~L~~N~i~~  140 (269)
                      .+++|+.|+|++|+|+++.+  ..+..+++|+.|+|++|+|+.+..-..+.  +|+.|+|++|++.+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGG
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCcc
Confidence            35566666666666666542  34445666666666666666552211122  66666666666654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.05  E-value=9e-07  Score=81.51  Aligned_cols=155  Identities=8%  Similarity=-0.014  Sum_probs=82.4

Q ss_pred             CCceEEEeec---------CCccccccccc-cccCCCcccEEEcccccccccchhhhc-CCCCCCEEEcC--C----CCC
Q psy14765         54 LDTQVLDLSS---------NNINVLQKEIF-LQMGITNIQKLYLRKCKLEFVDDRAFR-GVTNMDELDLS--D----NLL  116 (269)
Q Consensus        54 ~~l~~L~l~~---------n~l~~i~~~~f-~~~~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~L~--~----N~l  116 (269)
                      ++|+.|++.+         +.++......+ .  ++++|+.|.+..|.++......+. .+++|+.|+++  +    +.+
T Consensus       338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~--~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l  415 (594)
T 2p1m_B          338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSM--GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYL  415 (594)
T ss_dssp             TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH--HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTT
T ss_pred             CCCCEEEEecCcccccccCCCCCHHHHHHHHH--hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccc
Confidence            6788888743         34442221111 2  367777787777777765554443 46777777777  3    555


Q ss_pred             CCcCCc------cC-ccccceeecCCCcccccCccccCC-CCCCCEEEccCCcceeeCcccc-cccccCCCeeEEeeccc
Q psy14765        117 STVPSL------IY-IPYLKSINLAHNPINQISSYSFQS-TPGIRYIDMSNCQIHTIYSEAF-YVMVLPGSNLTLDCRVQ  187 (269)
Q Consensus       117 ~~l~~~------~~-l~~L~~L~L~~N~i~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~-~~l~~~l~~l~l~~n~~  187 (269)
                      +..|..      .. +++|+.|++++ .++......+.. +++|+.|++++|.++......+ ..++. ++.+.+++|.+
T Consensus       416 ~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~-L~~L~L~~n~~  493 (594)
T 2p1m_B          416 TLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDS-LRKLEIRDCPF  493 (594)
T ss_dssp             TCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTT-CCEEEEESCSC
T ss_pred             cCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCC-cCEEECcCCCC
Confidence            544321      11 56777777765 444333333332 5667777777777654333222 22333 56777776665


Q ss_pred             cCCCccccceecccccccccccCccc
Q psy14765        188 SATPCRIMWSINRKIYDHVNWNSNKI  213 (269)
Q Consensus       188 ~~~~~~~~~~~~~~~l~~l~~~~n~~  213 (269)
                      +..... .+......++.+++.++.+
T Consensus       494 ~~~~~~-~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          494 GDKALL-ANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CHHHHH-HTGGGGGGSSEEEEESSCC
T ss_pred             cHHHHH-HHHHhCCCCCEEeeeCCCC
Confidence            221110 0111223356666666554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.02  E-value=7.9e-07  Score=81.87  Aligned_cols=38  Identities=8%  Similarity=0.265  Sum_probs=15.5

Q ss_pred             ccccceeecCCCcccccCcccc-CCCCCCCEEEccCCcc
Q psy14765        125 IPYLKSINLAHNPINQISSYSF-QSTPGIRYIDMSNCQI  162 (269)
Q Consensus       125 l~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~L~~N~l  162 (269)
                      +++|+.|++++|.+++.....+ ..+++|+.|+|++|.+
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence            3444444444444433222112 2334444444444444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.86  E-value=7.9e-06  Score=71.07  Aligned_cols=154  Identities=12%  Similarity=0.199  Sum_probs=90.7

Q ss_pred             CCceEEEeecCCcc-----ccc----cccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcC-Ccc
Q psy14765         54 LDTQVLDLSSNNIN-----VLQ----KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP-SLI  123 (269)
Q Consensus        54 ~~l~~L~l~~n~l~-----~i~----~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~  123 (269)
                      ++|+.|.+..+...     .+.    ...+.  .+|+|+.|.+++|.-..+++  + .+++|+.|++..+.+..-. ...
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~--~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l  213 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLD--AMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSVVEDI  213 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBCHHHHH--TCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred             chhhheeecCcchhhcccccccccCHHHHHh--cCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHHHHHH
Confidence            68999988765432     111    12334  67899999998874223332  3 3788999999988876211 111


Q ss_pred             --C-ccccceeecCC--Cc------ccccCcccc--CCCCCCCEEEccCCcceeeCccccc---ccccCCCeeEEeeccc
Q psy14765        124 --Y-IPYLKSINLAH--NP------INQISSYSF--QSTPGIRYIDMSNCQIHTIYSEAFY---VMVLPGSNLTLDCRVQ  187 (269)
Q Consensus       124 --~-l~~L~~L~L~~--N~------i~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~~l~~l~l~~n~~  187 (269)
                        . +++|+.|+|+.  |.      +..+.+ .+  ..+++|+.|+|.+|.+.......+.   .++. ++.+++++|.+
T Consensus       214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~-L~~LdLs~n~L  291 (362)
T 2ra8_A          214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ-LETMDISAGVL  291 (362)
T ss_dssp             HHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGG-CSEEECCSSCC
T ss_pred             HHccCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCC-CCEEECCCCCC
Confidence              1 78899998853  22      222211 12  2468999999999988742222221   2333 78899988876


Q ss_pred             cCCCcc-cc-ceecccccccccccCcccc
Q psy14765        188 SATPCR-IM-WSINRKIYDHVNWNSNKIN  214 (269)
Q Consensus       188 ~~~~~~-~~-~~~~~~~l~~l~~~~n~~~  214 (269)
                      +..... +. .+.....++.+++..|.++
T Consensus       292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          292 TDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             BHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             ChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            652110 00 1112334777888888765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.85  E-value=4.4e-06  Score=65.56  Aligned_cols=111  Identities=12%  Similarity=0.097  Sum_probs=77.2

Q ss_pred             CCCcccEEEcccc-cccccc----hhhhcCCCCCCEEEcCCCCCCCcC-----CccC-ccccceeecCCCcccccC----
Q psy14765         78 GITNIQKLYLRKC-KLEFVD----DRAFRGVTNMDELDLSDNLLSTVP-----SLIY-IPYLKSINLAHNPINQIS----  142 (269)
Q Consensus        78 ~l~~L~~L~L~~N-~i~~~~----~~~~~~l~~L~~L~L~~N~l~~l~-----~~~~-l~~L~~L~L~~N~i~~~~----  142 (269)
                      ..+.|+.|+|++| .|..-.    ...+...++|++|+|++|.|..-.     .... .+.|+.|+|++|.|+...    
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            6789999999999 887532    345667789999999999997422     1112 578999999999998632    


Q ss_pred             ccccCCCCCCCEEEc--cCCcceeeCccccccc-c--cCCCeeEEeecccc
Q psy14765        143 SYSFQSTPGIRYIDM--SNCQIHTIYSEAFYVM-V--LPGSNLTLDCRVQS  188 (269)
Q Consensus       143 ~~~~~~l~~L~~L~L--~~N~l~~~~~~~~~~l-~--~~l~~l~l~~n~~~  188 (269)
                      ...+...+.|+.|+|  ++|.+..-....+... .  ..+..+.++.|.++
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            344666788999999  8899876432222211 1  12566777666543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.82  E-value=1.3e-05  Score=69.74  Aligned_cols=129  Identities=14%  Similarity=0.084  Sum_probs=85.0

Q ss_pred             CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhc--CCCCCCEEEcCC--CC------CCCcCCcc
Q psy14765         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR--GVTNMDELDLSD--NL------LSTVPSLI  123 (269)
Q Consensus        54 ~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~--~l~~L~~L~L~~--N~------l~~l~~~~  123 (269)
                      ++|+.|.++++.-..+++  +   .+++|+.|++..+.++.-.-..+.  .+++|+.|+|+.  |.      +..+....
T Consensus       172 P~L~~L~L~g~~~l~l~~--~---~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l  246 (362)
T 2ra8_A          172 PLLNNLKIKGTNNLSIGK--K---PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF  246 (362)
T ss_dssp             TTCCEEEEECCBTCBCCS--C---BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred             CCCcEEEEeCCCCceecc--c---cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence            689999999884223333  3   578999999999887654433443  689999999853  22      21121111


Q ss_pred             --C-ccccceeecCCCcccccCcccc---CCCCCCCEEEccCCcceeeCcccc----cccccCCCeeEEeecccc
Q psy14765        124 --Y-IPYLKSINLAHNPINQISSYSF---QSTPGIRYIDMSNCQIHTIYSEAF----YVMVLPGSNLTLDCRVQS  188 (269)
Q Consensus       124 --~-l~~L~~L~L~~N~i~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~~l~~l~l~~n~~~  188 (269)
                        . +++|+.|+|.+|.+..-....+   ..+++|+.|+|+.|.++......+    ..++. ++.++++.|.++
T Consensus       247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~-L~~L~L~~n~i~  320 (362)
T 2ra8_A          247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH-LKFINMKYNYLS  320 (362)
T ss_dssp             CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTT-CSEEECCSBBCC
T ss_pred             hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCc-ceEEECCCCcCC
Confidence              1 6899999999998874222111   246889999999999887432222    23343 688899887644

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.80  E-value=3.7e-05  Score=56.68  Aligned_cols=52  Identities=13%  Similarity=0.208  Sum_probs=21.3

Q ss_pred             EEEcCCCCCC--CcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCC
Q psy14765        108 ELDLSDNLLS--TVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNC  160 (269)
Q Consensus       108 ~L~L~~N~l~--~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N  160 (269)
                      .++-+++.++  .+|..+ .++|+.|+|++|+|+.+++..|..+++|+.|+|++|
T Consensus        12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            3444444444  444322 223444444444444444444444444444433333

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.42  E-value=5.9e-05  Score=58.48  Aligned_cols=34  Identities=6%  Similarity=0.196  Sum_probs=16.7

Q ss_pred             ccceeecCCCc-ccccCccccCCCCCCCEEEccCC
Q psy14765        127 YLKSINLAHNP-INQISSYSFQSTPGIRYIDMSNC  160 (269)
Q Consensus       127 ~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N  160 (269)
                      +|+.|+|+++. |+.-.-..+..+++|+.|+++++
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c  149 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL  149 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred             CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence            45555555542 44322223444566666666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.27  E-value=0.00023  Score=55.15  Aligned_cols=91  Identities=20%  Similarity=0.296  Sum_probs=65.3

Q ss_pred             ccCCCC-C-CCceEEEeecCCccccccccccccCCCcccEEEccccc-ccccchhhhcCC----CCCCEEEcCCCC-CCC
Q psy14765         47 TIPEGI-D-LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEFVDDRAFRGV----TNMDELDLSDNL-LST  118 (269)
Q Consensus        47 ~ip~~~-~-~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l----~~L~~L~L~~N~-l~~  118 (269)
                      .+|... . ..|+.|+++++.|+...-..+.  ++++|+.|+|+++. |+.-.-..+..+    ++|+.|+|+++. |+.
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~--~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHME--GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGGGGGGGT--TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred             cCCcccCCCceEeEEeCcCCCccHHHHHHhc--CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence            345532 2 5799999999998855444455  89999999999985 776544556554    379999999974 773


Q ss_pred             cCCc-cC-ccccceeecCCCc-cc
Q psy14765        119 VPSL-IY-IPYLKSINLAHNP-IN  139 (269)
Q Consensus       119 l~~~-~~-l~~L~~L~L~~N~-i~  139 (269)
                      -.-. +. +++|+.|++++.+ ++
T Consensus       130 ~Gl~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          130 KGIIALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HHHHHGGGCTTCCEEEEESCTTCC
T ss_pred             HHHHHHhcCCCCCEEECCCCCCCC
Confidence            2211 22 8999999999864 44

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.27  E-value=0.0017  Score=51.12  Aligned_cols=82  Identities=15%  Similarity=0.132  Sum_probs=44.6

Q ss_pred             CCcccEEEcccc-cccccc----hhhhcCCCCCCEEEcCCCCCCCcCCccC------ccccceeecCCCcccccC----c
Q psy14765         79 ITNIQKLYLRKC-KLEFVD----DRAFRGVTNMDELDLSDNLLSTVPSLIY------IPYLKSINLAHNPINQIS----S  143 (269)
Q Consensus        79 l~~L~~L~L~~N-~i~~~~----~~~~~~l~~L~~L~L~~N~l~~l~~~~~------l~~L~~L~L~~N~i~~~~----~  143 (269)
                      -+.|+.|+|++| .|..-.    ..++..-+.|+.|+|++|.|..-....+      -..|+.|+|+.|.|..-.    .
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            455666777664 554321    2344445567777777777663221111      356777777777765321    1


Q ss_pred             cccCCCCCCCEEEccCC
Q psy14765        144 YSFQSTPGIRYIDMSNC  160 (269)
Q Consensus       144 ~~~~~l~~L~~L~L~~N  160 (269)
                      ..+..-+.|+.|+|++|
T Consensus       120 ~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHTTTTCCCSEEECCCC
T ss_pred             HHHhhCCceeEEECCCC
Confidence            23444456777777654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.72  E-value=0.01  Score=46.65  Aligned_cols=107  Identities=9%  Similarity=0.143  Sum_probs=69.8

Q ss_pred             CCceEEEeecC-Ccccccc----ccccccCCCcccEEEcccccccccchh----hhcCCCCCCEEEcCCCCCCCcCCc--
Q psy14765         54 LDTQVLDLSSN-NINVLQK----EIFLQMGITNIQKLYLRKCKLEFVDDR----AFRGVTNMDELDLSDNLLSTVPSL--  122 (269)
Q Consensus        54 ~~l~~L~l~~n-~l~~i~~----~~f~~~~l~~L~~L~L~~N~i~~~~~~----~~~~l~~L~~L~L~~N~l~~l~~~--  122 (269)
                      +.|+.|++++| .|..-..    ....  .-+.|+.|+|++|.|......    ++..-+.|+.|+|++|.|..-...  
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~--~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAAC--NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHT--TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHh--hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            57899999985 7763221    1222  357899999999999865433    344557899999999999843221  


Q ss_pred             ---cC-ccccceeecCCCc---ccccC----ccccCCCCCCCEEEccCCcc
Q psy14765        123 ---IY-IPYLKSINLAHNP---INQIS----SYSFQSTPGIRYIDMSNCQI  162 (269)
Q Consensus       123 ---~~-l~~L~~L~L~~N~---i~~~~----~~~~~~l~~L~~L~L~~N~l  162 (269)
                         .- -..|+.|+|++|.   +..-.    ...+..-+.|..|+++.|.+
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence               11 4569999998653   33211    22344456788888876654

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=93.06  E-value=0.1  Score=36.08  Aligned_cols=50  Identities=22%  Similarity=0.383  Sum_probs=39.0

Q ss_pred             cCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCC
Q psy14765         63 SNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL  115 (269)
Q Consensus        63 ~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~  115 (269)
                      +..++.|...+|.  ++++|+.+.+..+ ++.|...+|.++.+|+.+.+....
T Consensus         5 g~~vt~I~~~aF~--~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~   54 (100)
T 2lz0_A            5 GEPVVGMDKSLFA--GNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED   54 (100)
T ss_dssp             CCCCCSSCSCTTT--TCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred             CCccCEecHHHhc--CCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence            3567788888888  8888888888764 778888888888888888887654

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=84.98  E-value=2.2  Score=29.22  Aligned_cols=47  Identities=17%  Similarity=0.219  Sum_probs=32.1

Q ss_pred             cccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCC
Q psy14765         89 KCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHN  136 (269)
Q Consensus        89 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N  136 (269)
                      +..++.|...+|.++.+|+.+.+..+ ++.|...+|  +.+|+.+.+...
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            44567777777777777777777653 566766666  677777766553

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=82.03  E-value=0.64  Score=32.03  Aligned_cols=28  Identities=21%  Similarity=0.507  Sum_probs=23.3

Q ss_pred             CCCeeEEeeccccCCCccccceeccccc
Q psy14765        176 PGSNLTLDCRVQSATPCRIMWSINRKIY  203 (269)
Q Consensus       176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l  203 (269)
                      .++.+.|.|...+.+.+.+.|+.+...+
T Consensus        27 ~G~~~~l~C~~~G~P~p~v~W~k~g~~l   54 (107)
T 3knb_B           27 SGAEAELKCVVLGEPPPVVVWEKGGQQL   54 (107)
T ss_dssp             TTSCEEEEEEEEEESCCEEEEEETTEEC
T ss_pred             CCCcEEEEEEEEEecCCEEEEEECcccc
Confidence            3688999999989999999999876544

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=81.69  E-value=0.95  Score=34.82  Aligned_cols=27  Identities=15%  Similarity=0.165  Sum_probs=22.1

Q ss_pred             CCeeEEeeccccCCCccccceeccccc
Q psy14765        177 GSNLTLDCRVQSATPCRIMWSINRKIY  203 (269)
Q Consensus       177 l~~l~l~~n~~~~~~~~~~~~~~~~~l  203 (269)
                      +..+.|.|...+.+++.+.|..+...+
T Consensus       123 g~~v~l~C~~~g~p~p~v~W~~~g~~l  149 (212)
T 2yd6_A          123 TRTATMLCAASGNPDPEITWFKDFLPV  149 (212)
T ss_dssp             TSCEEEEEEEECSSCCEEEEEETTEEC
T ss_pred             CCCEEEEEEecCCCCCeEEEEECCccc
Confidence            578999999988889999999875433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	269
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.5 bits (197), Expect = 3e-18
 Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 7/155 (4%)

Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
            CP  C C      R V+C D     +P+ +  DT +LDL +N I  ++   F  +   N
Sbjct: 3   VCPFRCQCHL----RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNL--KN 56

Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQI 141
           +  L L   K+  +   AF  +  ++ L LS N L  +P  +     + + +  N I ++
Sbjct: 57  LHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL-QELRVHENEITKV 115

Query: 142 SSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLP 176
               F     +  +++    + +   E      + 
Sbjct: 116 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 2e-11
 Identities = 32/188 (17%), Positives = 68/188 (36%), Gaps = 3/188 (1%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  C C +   K T  C  +    +P GI   +Q + L  N I+ +    F       I
Sbjct: 2   CPGACVC-YNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTI 60

Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI-YIPYLKSINLAHNPINQI 141
             L+                +    +L  +  L S  P+    +  L +++L    + ++
Sbjct: 61  LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120

Query: 142 SSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRK 201
               F+    ++Y+ + +  +  +  + F  +    ++L L     S+ P R    ++  
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-THLFLHGNRISSVPERAFRGLHSL 179

Query: 202 IYDHVNWN 209
               ++ N
Sbjct: 180 DRLLLHQN 187

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 1e-09
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
          C     A    V C  RN   +P  +  DT +L LS N +        +    T + +L 
Sbjct: 4  CEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPY--TRLTQLN 61

Query: 87 LRKCK 91
          L + +
Sbjct: 62 LDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 4e-04
 Identities = 7/64 (10%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 103 VTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQI 162
           V +  E++     L+ +P  +       ++L+ N +   S  +      +  +++   ++
Sbjct: 9   VASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 163 HTIY 166
             + 
Sbjct: 68  TKLQ 71

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 54.0 bits (128), Expect = 2e-09
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 5/146 (3%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  C C+      TV+C  R    IP  I L T  L L+ N +  +  +         +
Sbjct: 2   CPAMCHCEG----TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLV 57

Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP-SLIYIPYLKSINLAHNPINQI 141
           +    R        +         +     + +        + +  LK++NL  N I+ +
Sbjct: 58  KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117

Query: 142 SSYSFQSTPGIRYIDMSNCQIHTIYS 167
              SF+    +  +++++   +    
Sbjct: 118 MPGSFEHLNSLTSLNLASNPFNCNCH 143

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.5 bits (109), Expect = 1e-06
 Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L L  NNI+ +     +   +T +Q+L+    K+  V   +   +TN++ L    N +
Sbjct: 310 TYLTLYFNNISDI---SPVS-SLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQI 363

Query: 117 STVPSLIYIPYLKSINLAHN 136
           S +  L  +  +  + L   
Sbjct: 364 SDLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 5e-05
 Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 76  QMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAH 135
              + N+  L L    +   D      +T +  L  ++N +S V SL  +  +  ++  H
Sbjct: 303 ISNLKNLTYLTLYFNNIS--DISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGH 360

Query: 136 NPINQISSYSFQSTPGIRYIDMSN 159
           N I+ ++     +   I  + +++
Sbjct: 361 NQISDLT--PLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 8/109 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L L +N I+ +     L               + +  D      + N+  L L  N +
Sbjct: 266 TELKLGANQISNISPLAGLTALTNLEL------NENQLEDISPISNLKNLTYLTLYFNNI 319

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
           S +  +  +  L+ +  A+N ++ +SS    +   I ++   + QI  +
Sbjct: 320 SDISPVSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISDL 366

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 7e-04
 Identities = 25/123 (20%), Positives = 54/123 (43%), Gaps = 6/123 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + L  ++N I+    +I     +TN+ +L L   +L+ +       +TN+ +LDL++N +
Sbjct: 200 ESLIATNNQIS----DITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI 253

Query: 117 STVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLP 176
           S +  L  +  L  + L  N I+ IS  +  +      ++ +  +  +  S    +  L 
Sbjct: 254 SNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT 313

Query: 177 GSN 179
              
Sbjct: 314 LYF 316

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 6e-06
 Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 4/64 (6%)

Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
          C C      R   C +     IP  +  +   L      + V+QK  F   G     ++ 
Sbjct: 6  CHCSN----RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEIS 61

Query: 87 LRKC 90
              
Sbjct: 62 QNDV 65

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 4e-05
 Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 6/110 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           +VL L+  ++ VL      Q+    +  L L   +L  +   A   +  ++ L  SDN L
Sbjct: 1   RVLHLAHKDLTVL--CHLEQL--LLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNAL 55

Query: 117 STVPSLIYIPYLKSINLAHNPINQISS-YSFQSTPGIRYIDMSNCQIHTI 165
             V  +  +P L+ + L +N + Q ++     S P +  +++    +   
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 4e-04
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 8/91 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             LDLS N +  L   +     +  +Q        ++         +  + EL L +N L
Sbjct: 23  THLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-----GVANLPRLQELLLCNNRL 77

Query: 117 STVPSLIYI---PYLKSINLAHNPINQISSY 144
               ++  +   P L  +NL  N + Q    
Sbjct: 78  QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 4e-05
 Identities = 10/80 (12%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 86  YLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYS 145
                              +++EL++S+N L  +P+L   P L+ +  + N + ++    
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEVPE-- 321

Query: 146 FQSTPGIRYIDMSNCQIHTI 165
                 ++ + +    +   
Sbjct: 322 --LPQNLKQLHVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 10/67 (14%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + L++S+N +  L            +++L      L  V +       N+ +L +  N L
Sbjct: 287 EELNVSNNKLIELPALP------PRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPL 336

Query: 117 STVPSLI 123
              P + 
Sbjct: 337 REFPDIP 343

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 6e-04
 Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 6/106 (5%)

Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIH 163
               EL+L++  LS++P L   P+L+S+  + N + ++          ++ + + N  + 
Sbjct: 38  RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPELPQS----LKSLLVDNNNLK 91

Query: 164 TIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWN 209
            +      +  L  SN  L+   +      +              +
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPD 137

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 19/121 (15%), Positives = 49/121 (40%), Gaps = 1/121 (0%)

Query: 80  TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIN 139
              ++L LR  K+  +++     +   D +D SDN +  +     +  LK++ + +N I 
Sbjct: 18  VRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRIC 76

Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSIN 199
           +I     Q+ P +  + ++N  +  +        +   + L +     +      ++ I 
Sbjct: 77  RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIY 136

Query: 200 R 200
           +
Sbjct: 137 K 137

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 8/65 (12%), Positives = 22/65 (33%), Gaps = 1/65 (1%)

Query: 100 FRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMS 158
           +       ELDL    +  + +L   +    +I+ + N I ++  +          ++ +
Sbjct: 14  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN 73

Query: 159 NCQIH 163
                
Sbjct: 74  RICRI 78

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 2e-04
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 5/119 (4%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQK-EIFLQMGITN 81
           CP  C      G   + C           +     + +L   N   LQ  E+    G+  
Sbjct: 1   CPDACCP---HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGE 57

Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIP-YLKSINLAHNPIN 139
           ++ L + K  L FV   AF     +  L+LS N L ++         L+ + L+ NP++
Sbjct: 58  LRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 4e-04
 Identities = 22/159 (13%), Positives = 48/159 (30%), Gaps = 5/159 (3%)

Query: 54  LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR----AFRGVTNMDEL 109
           LD Q LD+    ++  +    L   +   Q + L  C L     +    A R    + EL
Sbjct: 2   LDIQSLDIQCEELSDARWAELLP-LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 110 DLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
           +L  N L  V     +  L++ +     ++  +     +  G+    +           +
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 170 FYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNW 208
             ++   G  L  +  +        +      +      
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 159

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	269
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.95
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.82
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.81
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.81
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.81
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.79
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.69
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.66
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.63
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.63
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.61
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.58
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.58
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.57
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.55
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.55
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.52
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.49
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.46
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.43
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.36
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.27
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.25
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.2
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.98
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.47
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.46
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.24
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.99
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.98
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.95
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.85
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.18
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.97
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.75
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.57
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	89.08
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	83.31
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	83.03
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	81.61
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	80.52
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	80.02

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=1.1e-27  Score=190.00  Aligned_cols=140  Identities=26%  Similarity=0.511  Sum_probs=132.5

Q ss_pred             CCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCcc-ccccccccccCCCcccEEEcccccccccchhhh
Q psy14765         22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF  100 (269)
Q Consensus        22 ~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~-~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~  100 (269)
                      .||..|.|.    .++|+|+++++++||.++++++++|++++|+|+ .++...|.  ++++|+.|++++|+++.++++.|
T Consensus         1 ~CP~~C~C~----~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~--~l~~L~~L~L~~N~i~~~~~~~~   74 (192)
T d1w8aa_           1 DCPAMCHCE----GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFG--RLPHLVKLELKRNQLTGIEPNAF   74 (192)
T ss_dssp             CCCTTSEEE----TTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGG--GCTTCCEEECCSSCCCCBCTTTT
T ss_pred             CcCCCCEEc----CCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccC--CCceEeeeecccccccccccccc
Confidence            499999998    679999999999999999999999999999998 57788898  89999999999999999999999


Q ss_pred             cCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCc
Q psy14765        101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYS  167 (269)
Q Consensus       101 ~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  167 (269)
                      ..+++|++|+|++|+|+.+++.+|  +++|++|+|++|+|+++++++|..+++|++++|++|.+.....
T Consensus        75 ~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             TTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             ccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccc
Confidence            999999999999999999999998  9999999999999999999999999999999999999886543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.4e-26  Score=190.38  Aligned_cols=207  Identities=17%  Similarity=0.232  Sum_probs=175.0

Q ss_pred             CCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCC
Q psy14765         25 LGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT  104 (269)
Q Consensus        25 ~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~  104 (269)
                      ..|.|....+..+|+|++++|+++|+++++++++|+|++|.|+.+++..|.  ++++|++|+|++|+|+.+++  +..++
T Consensus         2 ~~C~~~~~~~~~~v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~--~l~~L~~L~L~~N~l~~l~~--~~~l~   77 (266)
T d1p9ag_           2 PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQV--DGTLP   77 (266)
T ss_dssp             CSSEEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEEC--CSCCT
T ss_pred             CccEEcccCCCeEEEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhh--cccccccccccccccccccc--ccccc
Confidence            469998777778999999999999999999999999999999999999998  89999999999999999864  67899


Q ss_pred             CCCEEEcCCCCCCCcCCccC-ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEe
Q psy14765        105 NMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLD  183 (269)
Q Consensus       105 ~L~~L~L~~N~l~~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~  183 (269)
                      +|++|++++|+++.++.... +++|+.|++++|.+..+.+..+..+.++..|++++|.++.+++..+..+.. +..+.++
T Consensus        78 ~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~-l~~l~l~  156 (266)
T d1p9ag_          78 VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK-LEKLSLA  156 (266)
T ss_dssp             TCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT-CCEEECT
T ss_pred             cccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccceecccccccccc-chhcccc
Confidence            99999999999998877666 999999999999999998888888899999999999999998888877776 7888898


Q ss_pred             eccccCCCccccceecccccccccccCccccccccceeecCCCeeeeeeccceee
Q psy14765        184 CRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEETVLSKDNSYLSVFSGGVDLA  238 (269)
Q Consensus       184 ~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~  238 (269)
                      +|.+...+++...  ....++.+++++|++...+..+........+.+.++...|
T Consensus       157 ~N~l~~~~~~~~~--~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         157 NNNLTELPAGLLN--GLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TSCCSCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cccccccCccccc--cccccceeecccCCCcccChhHCCCCCCCEEEecCCCCCC
Confidence            8888877765432  2334788888888888777777666666666665554443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.2e-25  Score=187.02  Aligned_cols=211  Identities=17%  Similarity=0.224  Sum_probs=157.6

Q ss_pred             CCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccch----
Q psy14765         22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD----   97 (269)
Q Consensus        22 ~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~----   97 (269)
                      +||..|+|.. ....+|+|++.+++++|..++++++.|+|++|+|+.+++..|.  ++++|++|++++|+|..+++    
T Consensus         1 ~cp~~C~C~~-~~~~~v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~ls~n~l~~i~~~~~~   77 (284)
T d1ozna_           1 PCPGACVCYN-EPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFR--ACRNLTILWLHSNVLARIDAAAFT   77 (284)
T ss_dssp             CCCTTCEEEC-SSSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTT
T ss_pred             CcCCCCEEcC-CCCeEEEcCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhh--cccccccccccccccccccccccc
Confidence            5999999974 3346899999999999999999999999999999999999998  89999999999998765443    


Q ss_pred             ---------------------hhhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCE
Q psy14765         98 ---------------------RAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRY  154 (269)
Q Consensus        98 ---------------------~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~  154 (269)
                                           ..|.++++|++|++++|.+..++...+  ..+|+.+++++|.++++++..|..+++|+.
T Consensus        78 ~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~  157 (284)
T d1ozna_          78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH  157 (284)
T ss_dssp             TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhh
Confidence                                 456667778888888888877766665  777888888888888887777877788888


Q ss_pred             EEccCCcceeeCcccccccccCCCeeEEeeccccCCCccccceecccccccccccCcccccccc-ceeecCCCeeeeeec
Q psy14765        155 IDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEE-TVLSKDNSYLSVFSG  233 (269)
Q Consensus       155 L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~-~~~~~~~~~~~~~~~  233 (269)
                      |++++|.++.+++..|..++. +..+.+..|.+....+..  +.....++++++.+|++...+. .+........+.+.+
T Consensus       158 L~l~~N~l~~l~~~~f~~l~~-L~~l~l~~N~l~~i~~~~--f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         158 LFLHGNRISSVPERAFRGLHS-LDRLLLHQNRVAHVHPHA--FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             EECCSSCCCEECTTTTTTCTT-CCEEECCSSCCCEECTTT--TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred             cccccCcccccchhhhccccc-cchhhhhhccccccChhH--hhhhhhcccccccccccccccccccccccccCEEEecC
Confidence            888888888888888777765 677777777766555433  2333346777777777754333 233344444444444


Q ss_pred             cceee
Q psy14765        234 GVDLA  238 (269)
Q Consensus       234 ~n~~~  238 (269)
                      +...|
T Consensus       235 N~l~C  239 (284)
T d1ozna_         235 NPWVC  239 (284)
T ss_dssp             SCEEC
T ss_pred             CCCCC
Confidence            44433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=2.9e-24  Score=181.70  Aligned_cols=96  Identities=30%  Similarity=0.580  Sum_probs=90.1

Q ss_pred             CCCCCCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhh
Q psy14765         21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF  100 (269)
Q Consensus        21 ~~cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~  100 (269)
                      ..||..|.|.    .++|+|++++++++|..+++++++|++++|+|+.+++..|.  ++++|++|++++|.+..+++.+|
T Consensus         2 ~~~p~~c~c~----~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~--~l~~L~~L~l~~n~~~~i~~~~f   75 (305)
T d1xkua_           2 PVCPFRCQCH----LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFK--NLKNLHTLILINNKISKISPGAF   75 (305)
T ss_dssp             CCCCTTCEEE----TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSCCCCBCTTTT
T ss_pred             CCCCCCCEec----CCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhh--ccccccccccccccccccchhhh
Confidence            5799999998    68899999999999999999999999999999999999998  89999999999999999999999


Q ss_pred             cCCCCCCEEEcCCCCCCCcCCc
Q psy14765        101 RGVTNMDELDLSDNLLSTVPSL  122 (269)
Q Consensus       101 ~~l~~L~~L~L~~N~l~~l~~~  122 (269)
                      .++++|+.|++++|+++.+|..
T Consensus        76 ~~l~~L~~L~l~~n~l~~l~~~   97 (305)
T d1xkua_          76 APLVKLERLYLSKNQLKELPEK   97 (305)
T ss_dssp             TTCTTCCEEECCSSCCSBCCSS
T ss_pred             hCCCccCEecccCCccCcCccc
Confidence            9999999999999988777643

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.5e-21  Score=146.50  Aligned_cols=112  Identities=21%  Similarity=0.304  Sum_probs=103.5

Q ss_pred             CCCCCeEeeeCCCcEEEcCCCCCcccCCCCC--CCceEEEeecC-CccccccccccccCCCcccEEEcccccccccchhh
Q psy14765         23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGID--LDTQVLDLSSN-NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA   99 (269)
Q Consensus        23 cp~~C~C~~~~~~~~v~c~~~~l~~ip~~~~--~~l~~L~l~~n-~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~   99 (269)
                      ||..|.|..   ..+++|+++++.++|..++  ++++.|++.+| .|+.|++.+|.  ++++|+.|++++|+|+.+++.+
T Consensus         1 CP~~C~c~~---~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~--~l~~L~~L~Ls~N~l~~i~~~~   75 (156)
T d2ifga3           1 CPDACCPHG---SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLR--GLGELRNLTIVKSGLRFVAPDA   75 (156)
T ss_dssp             CCSSSCCSS---SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSC--SCCCCSEEECCSSCCCEECTTG
T ss_pred             CcCCCCcCC---CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhc--cccccCcceeeccccCCccccc
Confidence            999999973   5679999999999999887  79999999766 59999999998  8999999999999999999999


Q ss_pred             hcCCCCCCEEEcCCCCCCCcCCccC-ccccceeecCCCccc
Q psy14765        100 FRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIN  139 (269)
Q Consensus       100 ~~~l~~L~~L~L~~N~l~~l~~~~~-l~~L~~L~L~~N~i~  139 (269)
                      |.++++|++|+|++|+|+.++.++| ..+|+.|+|++|++.
T Consensus        76 f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          76 FHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             GGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccccccccceeccCCCCcccChhhhccccccccccCCCccc
Confidence            9999999999999999999999999 778999999999985

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1e-19  Score=150.72  Aligned_cols=170  Identities=15%  Similarity=0.149  Sum_probs=104.1

Q ss_pred             CCcEEEcCCCCCcccCCCCC---CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEE
Q psy14765         34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD  110 (269)
Q Consensus        34 ~~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  110 (269)
                      ..+.+++++|.++.+|...+   ++|+.|++++|+|+.++..  .  .+++|+.|++++|+++.+++ .+.++++|+.|+
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~--~--~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~  106 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--G--TLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLD  106 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--S--CCTTCCEEECCSSCCSSCCC-CTTTCTTCCEEE
T ss_pred             CCCEEECcCCcCCCcCHHHhhccccccccccccccccccccc--c--cccccccccccccccccccc-cccccccccccc
Confidence            35788888888888876543   6788888888888877653  3  56778888888777776643 466666777777


Q ss_pred             cCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeecccc
Q psy14765        111 LSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQS  188 (269)
Q Consensus       111 L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~  188 (269)
                      +++|.+..++...+  +.+++.|++++|.++.+++..+..++.++.+++++|++++++++.|..+.. ++.+++++|.+.
T Consensus       107 l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~L~  185 (266)
T d1p9ag_         107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN-LDTLLLQENSLY  185 (266)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTT-CCEEECCSSCCC
T ss_pred             ccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccc-cceeecccCCCc
Confidence            77666666555444  555555555555555555555555555555555555555555555555443 455555555555


Q ss_pred             CCCccccceecccccccccccCcc
Q psy14765        189 ATPCRIMWSINRKIYDHVNWNSNK  212 (269)
Q Consensus       189 ~~~~~~~~~~~~~~l~~l~~~~n~  212 (269)
                      .+|..+...   ..++++++++|.
T Consensus       186 ~lp~~~~~~---~~L~~L~L~~Np  206 (266)
T d1p9ag_         186 TIPKGFFGS---HLLPFAFLHGNP  206 (266)
T ss_dssp             CCCTTTTTT---CCCSEEECCSCC
T ss_pred             ccChhHCCC---CCCCEEEecCCC
Confidence            554433322   224444555544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.81  E-value=3.8e-20  Score=146.11  Aligned_cols=136  Identities=18%  Similarity=0.324  Sum_probs=122.6

Q ss_pred             ceEEEeecCCccccccccccccCCCcccEEEcccccccc-cchhhhcCCCCCCEEEcCCCCCCCcCCccC--ccccceee
Q psy14765         56 TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF-VDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSIN  132 (269)
Q Consensus        56 l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~  132 (269)
                      .+.++.++++++.||++.+     +++++|+|++|+|+. +.+..|.++++|++|++++|.+..++...|  +++|++|+
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp-----~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~   84 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP-----LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC-----TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCEEEEeCCCcCccCCCCC-----CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceee
Confidence            3578999999999998864     578999999999975 667889999999999999999999988888  99999999


Q ss_pred             cCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCcccccee
Q psy14765        133 LAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSI  198 (269)
Q Consensus       133 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~~  198 (269)
                      |++|+|+++++.+|.++++|++|+|++|+|++++++.|..++. ++.+.+++|.+.+ .++..|+.
T Consensus        85 Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~-L~~l~L~~N~~~~-~~~~~~~~  148 (192)
T d1w8aa_          85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS-LTSLNLASNPFNC-NCHLAWFA  148 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTT-CCEEECTTCCBCC-SGGGHHHH
T ss_pred             eccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcc-ccccccccccccc-ccchHHHh
Confidence            9999999999999999999999999999999999999999886 8999999998654 56677764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=8.4e-20  Score=148.81  Aligned_cols=206  Identities=16%  Similarity=0.234  Sum_probs=156.1

Q ss_pred             CCC-CCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccc-cchhhh
Q psy14765         23 CPL-GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF-VDDRAF  100 (269)
Q Consensus        23 cp~-~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~-~~~~~~  100 (269)
                      |+. .|+|.    .+.++|++.+++++|..++++++.|++++|+|+.+++.+|.  ++++|++|++++|.+.. +++.+|
T Consensus         1 ~~~~~C~C~----~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~--~l~~L~~L~ls~n~~~~~i~~~~f   74 (242)
T d1xwdc1           1 CHHRICHCS----NRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADVF   74 (242)
T ss_dssp             CCCSSEEEC----SSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTT--TCTTCCEEEEESCTTCCEECSSSE
T ss_pred             CcCCcCCCc----CCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhh--ccchhhhhhhccccccceeecccc
Confidence            664 49997    68999999999999999999999999999999999999998  99999999999999865 677889


Q ss_pred             cCCCCCCEEEcC-CCCCCCcCCccC--ccccceeecCCCcccccCccc-cCCCCCCCEEEccCCcceeeCcccccccccC
Q psy14765        101 RGVTNMDELDLS-DNLLSTVPSLIY--IPYLKSINLAHNPINQISSYS-FQSTPGIRYIDMSNCQIHTIYSEAFYVMVLP  176 (269)
Q Consensus       101 ~~l~~L~~L~L~-~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~  176 (269)
                      .++++++++++. .|.+..++...|  +++|+.+++++|.+...++.. +..+..+..+...++.+..++...|..+...
T Consensus        75 ~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~  154 (242)
T d1xwdc1          75 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE  154 (242)
T ss_dssp             ESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSS
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccccc
Confidence            999999999875 578888888877  899999999999998775532 3345566666777888999988888877765


Q ss_pred             CCeeEEeeccccCCCccccceecccccccccccCccccccccc-eeecCCCeeeeeeccce
Q psy14765        177 GSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEET-VLSKDNSYLSVFSGGVD  236 (269)
Q Consensus       177 l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~-~~~~~~~~~~~~~~~n~  236 (269)
                      ...+.+++|.+...+........  ..+.....+|.+...+.. .....+...+.+..+.+
T Consensus       155 l~~L~l~~n~l~~i~~~~~~~~~--l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l  213 (242)
T d1xwdc1         155 SVILWLNKNGIQEIHNCAFNGTQ--LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI  213 (242)
T ss_dssp             CEEEECCSSCCCEECTTTTTTCC--EEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCC
T ss_pred             ceeeecccccccccccccccchh--hhccccccccccccccHHHhcCCCCCCEEECCCCcC
Confidence            67778888877766655433322  122233456666544433 33345555555544443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=8.5e-19  Score=146.37  Aligned_cols=175  Identities=19%  Similarity=0.260  Sum_probs=150.5

Q ss_pred             CcEEEcCCCCCcccCCCCC---CCceEEEeecCCcccccc-------------------------ccccccCCCcccEEE
Q psy14765         35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQK-------------------------EIFLQMGITNIQKLY   86 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~~i~~-------------------------~~f~~~~l~~L~~L~   86 (269)
                      .+.++.++|.++.+|+..+   ++++.|++++|.+..++.                         ..|.  ++++|++|+
T Consensus        34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~--~l~~L~~L~  111 (284)
T d1ozna_          34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH--GLGRLHTLH  111 (284)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTT--TCTTCCEEE
T ss_pred             CCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhc--ccccCCEEe
Confidence            4789999999999998655   678999998887765443                         3444  678999999


Q ss_pred             cccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCccee
Q psy14765         87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHT  164 (269)
Q Consensus        87 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~  164 (269)
                      +++|.+..+.+..+....+|+.+++++|.++.+++.+|  +++|+.|++++|.++++++..|.++++|+.+++++|++++
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            99999999998889999999999999999999998888  8899999999999999999999999999999999999999


Q ss_pred             eCcccccccccCCCeeEEeeccccCCCccccceecccccccccccCcccc
Q psy14765        165 IYSEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKIN  214 (269)
Q Consensus       165 ~~~~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~  214 (269)
                      +.+..|..+.. ++.++++.|.+...++....  +...++++++.+|.+.
T Consensus       192 i~~~~f~~l~~-L~~L~l~~N~i~~~~~~~~~--~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         192 VHPHAFRDLGR-LMTLYLFANNLSALPTEALA--PLRALQYLRLNDNPWV  238 (284)
T ss_dssp             ECTTTTTTCTT-CCEEECCSSCCSCCCHHHHT--TCTTCCEEECCSSCEE
T ss_pred             cChhHhhhhhh-cccccccccccccccccccc--cccccCEEEecCCCCC
Confidence            99999998876 79999999998888765433  3445888888888765

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.69  E-value=1.4e-16  Score=134.44  Aligned_cols=199  Identities=17%  Similarity=0.156  Sum_probs=144.4

Q ss_pred             CcEEEcCCCCCc---ccCCCCC--CCceEEEeec-CCcc-ccccccccccCCCcccEEEcccccccccchhhhcCCCCCC
Q psy14765         35 KRTVECIDRNFY---TIPEGID--LDTQVLDLSS-NNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD  107 (269)
Q Consensus        35 ~~~v~c~~~~l~---~ip~~~~--~~l~~L~l~~-n~l~-~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~  107 (269)
                      .+.++.+++++.   .+|+.+.  ++|++|++++ |++. .||+.. .  .+++|++|++++|+|.++.+..+..+.+|+
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i-~--~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-A--KLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-G--GCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccc-c--cccccchhhhccccccccccccccchhhhc
Confidence            456788888776   4777776  7999999986 8887 677664 4  799999999999999999988899999999


Q ss_pred             EEEcCCCCCC-CcCCccC-ccccceeecCCCcccccCccccCCCCCC-CEEEccCCcceeeCccccccccc---------
Q psy14765        108 ELDLSDNLLS-TVPSLIY-IPYLKSINLAHNPINQISSYSFQSTPGI-RYIDMSNCQIHTIYSEAFYVMVL---------  175 (269)
Q Consensus       108 ~L~L~~N~l~-~l~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~---------  175 (269)
                      .+++++|.+. .+|.... ++.++.+++++|.+.+..|..+..+..+ +.+++++|++++..+..+..+..         
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~  208 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM  208 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSE
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999887 4555555 9999999999999987777777777665 88999999998887766654432         


Q ss_pred             -------------CCCeeEEeeccccCCCccccceecccccccccccCcccc-ccccceeecCCCeeeeeeccceeee
Q psy14765        176 -------------PGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKIN-IKEETVLSKDNSYLSVFSGGVDLAA  239 (269)
Q Consensus       176 -------------~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~n~~~~  239 (269)
                                   .+..+.+.++.+...++.+   .....++.+++++|++. ..|..+..........+..+++.|.
T Consensus       209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~---~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~  283 (313)
T d1ogqa_         209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV---GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE  283 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGGC---CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred             cccccccccccccccccccccccccccccccc---ccccccccccCccCeecccCChHHhCCCCCCEEECcCCccccc
Confidence                         1233333333333322222   22233666777777774 5666677777666666666666654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=4.8e-16  Score=130.52  Aligned_cols=128  Identities=21%  Similarity=0.272  Sum_probs=72.4

Q ss_pred             CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--cccccee
Q psy14765         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSI  131 (269)
Q Consensus        54 ~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L  131 (269)
                      +.++.+++++|.+..++...+     ++|+.|++++|.++...+..|.+++.++.|++++|.++.++...+  +++|+.|
T Consensus       150 ~~L~~l~l~~n~l~~l~~~~~-----~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L  224 (305)
T d1xkua_         150 KKLSYIRIADTNITTIPQGLP-----PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL  224 (305)
T ss_dssp             TTCCEEECCSSCCCSCCSSCC-----TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred             cccCccccccCCccccCcccC-----CccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceee
Confidence            355566666666665554432     455666666666666655566666666666666666665555554  5666666


Q ss_pred             ecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccc-----cccCCCeeEEeeccc
Q psy14765        132 NLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYV-----MVLPGSNLTLDCRVQ  187 (269)
Q Consensus       132 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~~l~~l~l~~n~~  187 (269)
                      +|++|+|+.++ ..|..+++|++|+|++|+|+.++...|..     ....+..+.+++|++
T Consensus       225 ~L~~N~L~~lp-~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         225 HLNNNKLVKVP-GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             ECCSSCCSSCC-TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             ecccccccccc-cccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            66666666553 34555666666666666666665544431     112245555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=4.8e-16  Score=113.50  Aligned_cols=104  Identities=21%  Similarity=0.340  Sum_probs=77.6

Q ss_pred             eEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC-ccccceeecCC
Q psy14765         57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAH  135 (269)
Q Consensus        57 ~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~-l~~L~~L~L~~  135 (269)
                      +.|++++|+++.++.  +.  .+++|++|++++|+|+.+++ .|..+++|+.|++++|.|+.++. .. +++|+.+++++
T Consensus         1 R~L~Ls~n~l~~l~~--l~--~l~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LE--QLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSSCCC--GG--GGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCCCCcc--cc--cCCCCCEEECCCCccCcchh-hhhhhhcccccccccccccccCc-cccccccCeEECCC
Confidence            467788888887764  34  67788888888888887754 57778888888888888887764 33 78888888888


Q ss_pred             CcccccCc-cccCCCCCCCEEEccCCcceeeC
Q psy14765        136 NPINQISS-YSFQSTPGIRYIDMSNCQIHTIY  166 (269)
Q Consensus       136 N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~  166 (269)
                      |+|+.++. ..++.+++|+.+++++|+++.++
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            88877754 45677788888888888877654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=9.5e-17  Score=122.86  Aligned_cols=109  Identities=14%  Similarity=0.255  Sum_probs=91.1

Q ss_pred             CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC--cccccee
Q psy14765         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSI  131 (269)
Q Consensus        54 ~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L  131 (269)
                      ..+++|++++|+|+.|+. .+.  .+++|+.|++++|+|+.++  .|..+++|++|++++|+++.+++..+  +++|+.|
T Consensus        18 ~~lr~L~L~~n~I~~i~~-~~~--~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          18 VRDRELDLRGYKIPVIEN-LGA--TLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             TSCEEEECTTSCCCSCCC-GGG--GTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcEEECCCCCCCccCc-ccc--ccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCccccccccccccc
Confidence            478889999999998864 455  7888999999999999884  38888999999999999998888776  8899999


Q ss_pred             ecCCCcccccCc-cccCCCCCCCEEEccCCcceeeCc
Q psy14765        132 NLAHNPINQISS-YSFQSTPGIRYIDMSNCQIHTIYS  167 (269)
Q Consensus       132 ~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~  167 (269)
                      ++++|+|+.++. ..+..+++|+.+++++|.++..+.
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~  129 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH  129 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred             eeccccccccccccccccccccchhhcCCCccccccc
Confidence            999999888754 457788899999999998887763

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.61  E-value=1.5e-15  Score=127.99  Aligned_cols=151  Identities=17%  Similarity=0.184  Sum_probs=122.6

Q ss_pred             CCCeEeeeCCCcEEEcCCCCCcccCCCCCCCceEEEeecCCccc---cccccccccCCCcccEEEccc-ccccccchhhh
Q psy14765         25 LGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINV---LQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAF  100 (269)
Q Consensus        25 ~~C~C~~~~~~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~---i~~~~f~~~~l~~L~~L~L~~-N~i~~~~~~~~  100 (269)
                      +.|.|.|    ..|.|....-       ...++.|+++++.++.   +|+...   .+++|++|+|++ |.+++..|..|
T Consensus        32 d~C~~~w----~gv~C~~~~~-------~~~v~~L~L~~~~l~g~~~lp~~l~---~L~~L~~L~Ls~~N~l~g~iP~~i   97 (313)
T d1ogqa_          32 DCCNRTW----LGVLCDTDTQ-------TYRVNNLDLSGLNLPKPYPIPSSLA---NLPYLNFLYIGGINNLVGPIPPAI   97 (313)
T ss_dssp             CTTTTCS----TTEEECCSSS-------CCCEEEEEEECCCCSSCEECCGGGG---GCTTCSEEEEEEETTEESCCCGGG
T ss_pred             CCCCCcC----CCeEEeCCCC-------cEEEEEEECCCCCCCCCCCCChHHh---cCcccccccccccccccccccccc
Confidence            4455543    5588875321       2478999999999984   666655   799999999997 88997667789


Q ss_pred             cCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCC
Q psy14765        101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGS  178 (269)
Q Consensus       101 ~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~  178 (269)
                      .++++|++|+|++|++..++...+  +.+|+.+++++|.+.+..|..++.++.++.+++++|.+++..+..+..+.....
T Consensus        98 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~  177 (313)
T d1ogqa_          98 AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT  177 (313)
T ss_dssp             GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCC
T ss_pred             ccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccc
Confidence            999999999999999998877666  899999999999999988888999999999999999999876676666665456


Q ss_pred             eeEEeeccccC
Q psy14765        179 NLTLDCRVQSA  189 (269)
Q Consensus       179 ~l~l~~n~~~~  189 (269)
                      .+.+.+|.+..
T Consensus       178 ~l~~~~n~l~~  188 (313)
T d1ogqa_         178 SMTISRNRLTG  188 (313)
T ss_dssp             EEECCSSEEEE
T ss_pred             ccccccccccc
Confidence            77777776643

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=3.2e-15  Score=118.97  Aligned_cols=146  Identities=18%  Similarity=0.250  Sum_probs=115.7

Q ss_pred             CcEEEcCCCCCcccCC-CCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCC
Q psy14765         35 KRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD  113 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~-~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~  113 (269)
                      -+.++++++.++.++. .-.++|++|++++|.|+.+++.  .  .+++|+.|++++|+|+.++  .+.++++|+.|++++
T Consensus        48 L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~--~--~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          48 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPL--A--NLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGG--T--TCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECTT
T ss_pred             ccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCcccc--c--cCccccccccccccccccc--ccccccccccccccc
Confidence            5678999998888764 1237899999999999988753  3  7889999999999998875  378889999999999


Q ss_pred             CCCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCC
Q psy14765        114 NLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATP  191 (269)
Q Consensus       114 N~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~  191 (269)
                      |.+..++....++.++.+++++|.++....  +..+++|+.+++++|+++++++  +..++. ++.+.+++|.+..++
T Consensus       122 ~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~--~~~l~~L~~l~l~~n~l~~i~~--l~~l~~-L~~L~Ls~N~i~~l~  194 (210)
T d1h6ta2         122 NGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTK-LQNLYLSKNHISDLR  194 (210)
T ss_dssp             SCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCCGG--GTTCTT-CCEEECCSSCCCBCG
T ss_pred             cccccccccccccccccccccccccccccc--cccccccccccccccccccccc--ccCCCC-CCEEECCCCCCCCCh
Confidence            988877643338889999999998887643  6678889999999999988753  666665 788888888876654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=7e-15  Score=119.11  Aligned_cols=179  Identities=15%  Similarity=0.174  Sum_probs=145.4

Q ss_pred             CcEEEcCCCCCcccCCCCC---CCceEEEeecCCcc-ccccccccccCCCcccEEEcc-cccccccchhhhcCCCCCCEE
Q psy14765         35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLR-KCKLEFVDDRAFRGVTNMDEL  109 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~---~~l~~L~l~~n~l~-~i~~~~f~~~~l~~L~~L~L~-~N~i~~~~~~~~~~l~~L~~L  109 (269)
                      .++++.++|.++.+|...+   ++|++|++++|.+. .+++..|.  +++.++.+.+. .|.+..+++..|.++++|+++
T Consensus        31 l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~--~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          31 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS--NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             CSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEE--SCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccc--ccccccccccccccccccccccccccccccccc
Confidence            5789999999999998754   78999999999987 57888898  89999999886 478999999999999999999


Q ss_pred             EcCCCCCCCcCCccC---ccccceeecCCCcccccCccccCCCC-CCCEEEccCCcceeeCcccccccccCCCeeEEeec
Q psy14765        110 DLSDNLLSTVPSLIY---IPYLKSINLAHNPINQISSYSFQSTP-GIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCR  185 (269)
Q Consensus       110 ~L~~N~l~~l~~~~~---l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n  185 (269)
                      ++++|.+..++...+   +..+..+...++.+..+.+..|.+++ .+..+++++|+++.++...|..... .....+++|
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l-~~~~~l~~n  187 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQL-DELNLSDNN  187 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCE-EEEECTTCT
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhh-hcccccccc
Confidence            999999998776554   56666777788899999888888765 7888999999999999888776554 344456788


Q ss_pred             cccCCCccccceecccccccccccCcccccccc
Q psy14765        186 VQSATPCRIMWSINRKIYDHVNWNSNKINIKEE  218 (269)
Q Consensus       186 ~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~  218 (269)
                      .+...+....  .+...++++++.+|++...+.
T Consensus       188 ~l~~l~~~~f--~~l~~L~~L~Ls~N~l~~l~~  218 (242)
T d1xwdc1         188 NLEELPNDVF--HGASGPVILDISRTRIHSLPS  218 (242)
T ss_dssp             TCCCCCTTTT--TTSCCCSEEECTTSCCCCCCS
T ss_pred             ccccccHHHh--cCCCCCCEEECCCCcCCccCH
Confidence            8887775542  223448889999998865544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=1.3e-14  Score=114.35  Aligned_cols=145  Identities=14%  Similarity=0.239  Sum_probs=103.1

Q ss_pred             CcEEEcCCCCCcccCCC-CCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCC
Q psy14765         35 KRTVECIDRNFYTIPEG-IDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD  113 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~-~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~  113 (269)
                      -+.++++++++++++.- -.++++.|++++|+++.+++  +.  ++++|+.|++++|.+..+++  +.++++|+.|++++
T Consensus        42 l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~--l~--~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~  115 (199)
T d2omxa2          42 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN  115 (199)
T ss_dssp             CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECCS
T ss_pred             CCEEECCCCCCCCccccccCCCcCcCccccccccCccc--cc--CCcccccccccccccccccc--cccccccccccccc
Confidence            46788888887776431 12678888888888877765  44  77888888888888777753  77778888888888


Q ss_pred             CCCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCC
Q psy14765        114 NLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSAT  190 (269)
Q Consensus       114 N~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~  190 (269)
                      |.+..++....+++|+.|++++|++..++  .+..+++|+.|++++|+++.+++  +..++. ++.+.+++|.+..+
T Consensus       116 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~l~~~~~L~~L~l~~n~l~~l~~--l~~l~~-L~~L~ls~N~i~~i  187 (199)
T d2omxa2         116 NQITDIDPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDLKP--LANLTT-LERLDISSNKVSDI  187 (199)
T ss_dssp             SCCCCCGGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG--GTTCTT-CCEEECCSSCCCCC
T ss_pred             cccccccccchhhhhHHhhhhhhhhcccc--cccccccccccccccccccCCcc--ccCCCC-CCEEECCCCCCCCC
Confidence            87776653222777888888888877663  36677788888888888877643  555554 67777777766554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1e-15  Score=116.95  Aligned_cols=118  Identities=18%  Similarity=0.255  Sum_probs=102.1

Q ss_pred             CcEEEcCCCCCcccCCCC--CCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcC
Q psy14765         35 KRTVECIDRNFYTIPEGI--DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS  112 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~--~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~  112 (269)
                      -+++++++|+++.+|...  .++++.|++++|.|+.++.  |.  ++++|+.|++++|+|+.+++..+..+++|++|+++
T Consensus        20 lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~--~~--~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          20 DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FP--LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             CEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECC--CC--CCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             CcEEECCCCCCCccCccccccccCCEEECCCCCCCccCC--cc--cCcchhhhhcccccccCCCccccccccccccceec
Confidence            578999999999997532  2789999999999999854  55  89999999999999999998888899999999999


Q ss_pred             CCCCCCcCC-ccC--ccccceeecCCCcccccCc---cccCCCCCCCEEE
Q psy14765        113 DNLLSTVPS-LIY--IPYLKSINLAHNPINQISS---YSFQSTPGIRYID  156 (269)
Q Consensus       113 ~N~l~~l~~-~~~--l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~  156 (269)
                      +|+|+.++. ..+  +++|+.+++++|+++..+.   ..+..+++|++||
T Consensus        96 ~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          96 NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            999998875 233  8999999999999988753   3567789999886

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=5e-15  Score=107.96  Aligned_cols=114  Identities=23%  Similarity=0.292  Sum_probs=94.8

Q ss_pred             cEEEcCCCCCcccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCC
Q psy14765         36 RTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD  113 (269)
Q Consensus        36 ~~v~c~~~~l~~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~  113 (269)
                      +.+++++|+++.++. +.  +.+++|++++|.|+.+|+. |.  .+++|+.|++++|+|+.++  .+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~-~~--~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPA-LA--ALRCLEVLQASDNALENVD--GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGG-GG--GCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhh-hh--hhhcccccccccccccccC--ccccccccCeEECCC
Confidence            468999999999875 44  7999999999999999875 45  8999999999999999985  389999999999999


Q ss_pred             CCCCCcCC-ccC--ccccceeecCCCcccccCc---cccCCCCCCCEE
Q psy14765        114 NLLSTVPS-LIY--IPYLKSINLAHNPINQISS---YSFQSTPGIRYI  155 (269)
Q Consensus       114 N~l~~l~~-~~~--l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L  155 (269)
                      |+|+.++. ..+  +++|+.+++++|+++..+.   .....+++|+.+
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            99998875 333  8999999999999986642   223345666654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.5e-14  Score=109.63  Aligned_cols=95  Identities=15%  Similarity=0.283  Sum_probs=46.7

Q ss_pred             hcCCCCCCEEEcCCC-CCCCcCCccC--ccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccC
Q psy14765        100 FRGVTNMDELDLSDN-LLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLP  176 (269)
Q Consensus       100 ~~~l~~L~~L~L~~N-~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~  176 (269)
                      +.++++|++|++++| .|+.++...|  +++|+.|++++|+|+.+++.+|.++++|++|+|++|+|+.++.+.|..+.  
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~--  104 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS--  104 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC--
T ss_pred             ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcccc--
Confidence            334444444444333 2444444444  44444444444444444444455555555555555555555555554443  


Q ss_pred             CCeeEEeeccccCCCccccce
Q psy14765        177 GSNLTLDCRVQSATPCRIMWS  197 (269)
Q Consensus       177 l~~l~l~~n~~~~~~~~~~~~  197 (269)
                      +..+.+++|++ .+.|++.|+
T Consensus       105 l~~L~L~~Np~-~C~C~~~~l  124 (156)
T d2ifga3         105 LQELVLSGNPL-HCSCALRWL  124 (156)
T ss_dssp             CCEEECCSSCC-CCCGGGHHH
T ss_pred             ccccccCCCcc-cCCchHHHH
Confidence            35555555554 346666666

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.55  E-value=3.4e-14  Score=112.97  Aligned_cols=140  Identities=15%  Similarity=0.172  Sum_probs=118.8

Q ss_pred             CCcEEEcCCCCCcccCCCC-CCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcC
Q psy14765         34 GKRTVECIDRNFYTIPEGI-DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS  112 (269)
Q Consensus        34 ~~~~v~c~~~~l~~ip~~~-~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~  112 (269)
                      .-+++++++|.++.+++.- .++|+.|++++|+++.++.  +.  ++++|+.|++++|.+..++  .+..+++++.++++
T Consensus        69 ~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~--l~--~l~~L~~L~l~~~~~~~~~--~l~~l~~l~~l~~~  142 (210)
T d1h6ta2          69 NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LK--DLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLG  142 (210)
T ss_dssp             TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GT--TCTTCCEEECTTSCCCCCG--GGGGCTTCCEEECC
T ss_pred             CCCEEeCCCccccCccccccCcccccccccccccccccc--cc--ccccccccccccccccccc--cccccccccccccc
Confidence            3689999999999887532 3799999999999999874  44  7999999999999998875  48889999999999


Q ss_pred             CCCCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEee
Q psy14765        113 DNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDC  184 (269)
Q Consensus       113 ~N~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~  184 (269)
                      +|.++..+....+++|+.+++++|+++++.+  ++++++|+.|++++|+++.++  .+..++. ++.+.+++
T Consensus       143 ~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~-L~~L~Ls~  209 (210)
T d1h6ta2         143 NNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKN-LDVLELFS  209 (210)
T ss_dssp             SSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTT-CSEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccc--ccCCCCCCEEECCCCCCCCCh--hhcCCCC-CCEEEccC
Confidence            9999876643339999999999999998854  889999999999999999885  4677765 78787764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=7.2e-14  Score=110.05  Aligned_cols=131  Identities=17%  Similarity=0.283  Sum_probs=111.4

Q ss_pred             CCcEEEcCCCCCcccCCC-CCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcC
Q psy14765         34 GKRTVECIDRNFYTIPEG-IDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS  112 (269)
Q Consensus        34 ~~~~v~c~~~~l~~ip~~-~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~  112 (269)
                      .-+++++++|+++.+++- -.++++.|++++|.+..+++  +.  +++.|+.|+++++.+..+.+  +..+++|+.|+++
T Consensus        63 nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~--l~--~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~  136 (199)
T d2omxa2          63 NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LA--NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS  136 (199)
T ss_dssp             TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GT--TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred             CcCcCccccccccCcccccCCcccccccccccccccccc--cc--cccccccccccccccccccc--cchhhhhHHhhhh
Confidence            357999999999988752 12799999999999998875  55  89999999999999988754  7889999999999


Q ss_pred             CCCCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccc
Q psy14765        113 DNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMV  174 (269)
Q Consensus       113 ~N~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  174 (269)
                      +|++..++....+++++.|++.+|+++++++  ++++++|+.|++++|++++++  .+..++
T Consensus       137 ~n~l~~~~~l~~~~~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~N~i~~i~--~l~~L~  194 (199)
T d2omxa2         137 SNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS--VLAKLT  194 (199)
T ss_dssp             SSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGGGCT
T ss_pred             hhhhcccccccccccccccccccccccCCcc--ccCCCCCCEEECCCCCCCCCc--cccCCC
Confidence            9999988642239999999999999999864  889999999999999999875  345544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.49  E-value=8.9e-14  Score=119.44  Aligned_cols=166  Identities=19%  Similarity=0.252  Sum_probs=124.8

Q ss_pred             CcEEEcCCCCCcccCC-CCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCC
Q psy14765         35 KRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD  113 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~-~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~  113 (269)
                      ...++++++.++.+++ ...++++.|++++|.++.++.  +.  .+++|+.|++++|.++++++  +..+++|+.|++++
T Consensus       199 ~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~~--l~--~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~  272 (384)
T d2omza2         199 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA  272 (384)
T ss_dssp             CSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GG--GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS
T ss_pred             cceeeccCCccCCCCcccccCCCCEEECCCCCCCCcch--hh--cccccchhccccCccCCCCc--ccccccCCEeeccC
Confidence            5678888888887654 334789999999999988753  44  78899999999999998865  77888999999999


Q ss_pred             CCCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCcc
Q psy14765        114 NLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPCR  193 (269)
Q Consensus       114 N~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~~  193 (269)
                      |.++.+++...++.++.+.++.|.++++..  +..+++++.|++++|+++++++  +..++. ++.+.+++|.+..++  
T Consensus       273 ~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~--~~~~~~l~~L~ls~n~l~~l~~--l~~l~~-L~~L~L~~n~l~~l~--  345 (384)
T d2omza2         273 NQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTK-LQRLFFANNKVSDVS--  345 (384)
T ss_dssp             SCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTT-CCEEECCSSCCCCCG--
T ss_pred             cccCCCCccccccccccccccccccccccc--cchhcccCeEECCCCCCCCCcc--cccCCC-CCEEECCCCCCCCCh--
Confidence            998877653337778888888888877642  6677788888888888887753  555654 688888888776654  


Q ss_pred             ccceecccccccccccCccccc
Q psy14765        194 IMWSINRKIYDHVNWNSNKINI  215 (269)
Q Consensus       194 ~~~~~~~~~l~~l~~~~n~~~~  215 (269)
                        ++.+...++++++++|++..
T Consensus       346 --~l~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         346 --SLANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             --GGGGCTTCCEEECCSSCCCB
T ss_pred             --hHcCCCCCCEEECCCCcCCC
Confidence              23344457778888777753

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.46  E-value=4.6e-13  Score=114.86  Aligned_cols=144  Identities=19%  Similarity=0.238  Sum_probs=68.9

Q ss_pred             cEEEcCCCCCcccCCC-CCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCC
Q psy14765         36 RTVECIDRNFYTIPEG-IDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN  114 (269)
Q Consensus        36 ~~v~c~~~~l~~ip~~-~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N  114 (269)
                      +.++++++.++.+|.. -.++++.+++++|.++.+++  +.  ++++|++|++++++++++++  +..++.++.++++.|
T Consensus       222 ~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~--~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n  295 (384)
T d2omza2         222 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNEN  295 (384)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GT--TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred             CEEECCCCCCCCcchhhcccccchhccccCccCCCCc--cc--ccccCCEeeccCcccCCCCc--ccccccccccccccc
Confidence            3455555555544321 11455555555555554443  22  44555555555555555432  444555555555555


Q ss_pred             CCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCC
Q psy14765        115 LLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSAT  190 (269)
Q Consensus       115 ~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~  190 (269)
                      .++.++....+++++.|++++|+++++++  +..+++|+.|++++|+++.++  .+..++. ++.+++++|.+...
T Consensus       296 ~l~~~~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l~--~l~~l~~-L~~L~l~~N~l~~l  366 (384)
T d2omza2         296 QLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVS--SLANLTN-INWLSAGHNQISDL  366 (384)
T ss_dssp             CCSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTT-CCEEECCSSCCCBC
T ss_pred             ccccccccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCCh--hHcCCCC-CCEEECCCCcCCCC
Confidence            55544321114555555555555555432  444555555555555555443  2344433 45555555554443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.43  E-value=1.8e-12  Score=103.79  Aligned_cols=165  Identities=22%  Similarity=0.278  Sum_probs=118.5

Q ss_pred             CcEEEcCCCCCcccCCCCC--CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcC
Q psy14765         35 KRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS  112 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~--~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~  112 (269)
                      -+.+++.++++++++ ++.  ++|+.|++++|.+..+.+  |.  .+++++++++++|.++.+.  .+.++++|+.++++
T Consensus        43 L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~--l~--~l~~l~~l~~~~n~~~~i~--~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          43 ITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LK--NLTKITELELSGNPLKNVS--AIAGLQSIKTLDLT  115 (227)
T ss_dssp             CCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GT--TCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECT
T ss_pred             cCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc--cc--ccccccccccccccccccc--cccccccccccccc
Confidence            578889999988874 343  899999999999988765  44  7889999999999988875  47788999999999


Q ss_pred             CCCCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCCc
Q psy14765        113 DNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATPC  192 (269)
Q Consensus       113 ~N~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~~  192 (269)
                      ++....++.....+.++.+.++.+.+....+  +...++|+.|++++|.++...+  +..++. ++.+++++|.+..++ 
T Consensus       116 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~--l~~l~~-L~~L~Ls~n~l~~l~-  189 (227)
T d1h6ua2         116 STQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSK-LTTLKADDNKISDIS-  189 (227)
T ss_dssp             TSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTT-CCEEECCSSCCCCCG-
T ss_pred             cccccccchhccccchhhhhchhhhhchhhh--hccccccccccccccccccchh--hccccc-ceecccCCCccCCCh-
Confidence            8887766543336677777777777665533  5566777888887777765542  555554 677777777766543 


Q ss_pred             cccceecccccccccccCccccc
Q psy14765        193 RIMWSINRKIYDHVNWNSNKINI  215 (269)
Q Consensus       193 ~~~~~~~~~~l~~l~~~~n~~~~  215 (269)
                         ++.....++++++++|++..
T Consensus       190 ---~l~~l~~L~~L~Ls~N~lt~  209 (227)
T d1h6ua2         190 ---PLASLPNLIEVHLKNNQISD  209 (227)
T ss_dssp             ---GGGGCTTCCEEECTTSCCCB
T ss_pred             ---hhcCCCCCCEEECcCCcCCC
Confidence               23333447777777777643

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.36  E-value=4.6e-12  Score=101.37  Aligned_cols=148  Identities=15%  Similarity=0.211  Sum_probs=120.7

Q ss_pred             CCCcEEEcCCCCCcccCC-CCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEc
Q psy14765         33 AGKRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL  111 (269)
Q Consensus        33 ~~~~~v~c~~~~l~~ip~-~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  111 (269)
                      +.-+.+++++|.++.+++ .-.+.++.+++++|.++.++.  +.  ++++|+.++++++....+.+  +...+.++.+.+
T Consensus        63 ~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~--l~--~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~l~~  136 (227)
T d1h6ua2          63 NNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IA--GLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYL  136 (227)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GT--TCTTCCEEECTTSCCCCCGG--GTTCTTCCEEEC
T ss_pred             CCCcEeecCCceeecccccccccccccccccccccccccc--cc--ccccccccccccccccccch--hccccchhhhhc
Confidence            346899999999988754 333899999999999998864  44  78999999999999888754  667888999999


Q ss_pred             CCCCCCCcCCccCccccceeecCCCcccccCccccCCCCCCCEEEccCCcceeeCcccccccccCCCeeEEeeccccCCC
Q psy14765        112 SDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQSATP  191 (269)
Q Consensus       112 ~~N~l~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~l~~l~l~~n~~~~~~  191 (269)
                      +++.+.........++|+.|++++|.+....+  ++++++|+.|++++|+++++++  +..++. ++.+.+++|.+...+
T Consensus       137 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n~l~~l~~--l~~l~~-L~~L~Ls~N~lt~i~  211 (227)
T d1h6ua2         137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPN-LIEVHLKNNQISDVS  211 (227)
T ss_dssp             CSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTT-CCEEECTTSCCCBCG
T ss_pred             hhhhhchhhhhccccccccccccccccccchh--hcccccceecccCCCccCCChh--hcCCCC-CCEEECcCCcCCCCc
Confidence            99988866543338889999999999887654  7889999999999999998754  666765 789999998877665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.27  E-value=1.5e-14  Score=114.07  Aligned_cols=108  Identities=18%  Similarity=0.263  Sum_probs=71.0

Q ss_pred             CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC-ccccceee
Q psy14765         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSIN  132 (269)
Q Consensus        54 ~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~-l~~L~~L~  132 (269)
                      ++++.|++++|+|+.++.  +.  ++++|+.|++++|+|+.+++ .+..+++|++|++++|+++.++. .. +++|+.|+
T Consensus        48 ~~L~~L~Ls~n~I~~i~~--l~--~l~~L~~L~Ls~N~i~~i~~-~~~~~~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~  121 (198)
T d1m9la_          48 KACKHLALSTNNIEKISS--LS--GMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLSG-IEKLVNLRVLY  121 (198)
T ss_dssp             TTCCEEECSEEEESCCCC--HH--HHTTCCEEECCEEEECSCSS-HHHHHHHCCEEECSEEECCCHHH-HHHHHHSSEEE
T ss_pred             cccceeECcccCCCCccc--cc--CCccccChhhcccccccccc-ccccccccccccccccccccccc-ccccccccccc
Confidence            567777777777777643  44  66777777777777776643 33344567777777777776643 23 67777777


Q ss_pred             cCCCcccccCc-cccCCCCCCCEEEccCCcceeeCc
Q psy14765        133 LAHNPINQISS-YSFQSTPGIRYIDMSNCQIHTIYS  167 (269)
Q Consensus       133 L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~  167 (269)
                      +++|+|+.+.. ..++.+++|+.|++++|++.....
T Consensus       122 L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_         122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             cccchhccccccccccCCCccceeecCCCccccCcc
Confidence            77777776643 346677777777777777665443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.25  E-value=4.3e-14  Score=111.33  Aligned_cols=128  Identities=18%  Similarity=0.243  Sum_probs=103.9

Q ss_pred             CceEEEeecC--CccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccC-cccccee
Q psy14765         55 DTQVLDLSSN--NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSI  131 (269)
Q Consensus        55 ~l~~L~l~~n--~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~-l~~L~~L  131 (269)
                      ..+.+++.++  .+..++.. +.  .+++|++|++++|+|+.++  .+.++++|+.|++++|.|+.++.... +++|+.|
T Consensus        24 ~~~~~~l~~~~~~i~~l~~s-l~--~L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L   98 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDAT-LS--TLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEEL   98 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHH-HH--HTTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEE
T ss_pred             ccceeeeecccCchhhhhhH-Hh--cccccceeECcccCCCCcc--cccCCccccChhhccccccccccccccccccccc
Confidence            4555666654  35555544 44  7899999999999999985  38899999999999999999986544 7889999


Q ss_pred             ecCCCcccccCccccCCCCCCCEEEccCCcceeeCc-ccccccccCCCeeEEeeccccCC
Q psy14765        132 NLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYS-EAFYVMVLPGSNLTLDCRVQSAT  190 (269)
Q Consensus       132 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~~l~~l~l~~n~~~~~  190 (269)
                      ++++|+++.+++  +..+++|+.|++++|+++.++. ..+..++. ++.+.+++|++...
T Consensus        99 ~l~~N~i~~l~~--~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~-L~~L~L~~N~l~~~  155 (198)
T d1m9la_          99 WISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDK-LEDLLLAGNPLYND  155 (198)
T ss_dssp             ECSEEECCCHHH--HHHHHHSSEEEESEEECCCHHHHHHHTTTTT-CSEEEECSSHHHHH
T ss_pred             cccccccccccc--ccccccccccccccchhccccccccccCCCc-cceeecCCCccccC
Confidence            999999998843  7788999999999999998864 56677776 79999999976543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.20  E-value=3e-10  Score=95.55  Aligned_cols=121  Identities=20%  Similarity=0.315  Sum_probs=96.6

Q ss_pred             CcEEEcCCCCCcccCCCCCCCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCC
Q psy14765         35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN  114 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~~~~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N  114 (269)
                      -+++++++++++++|+ .+++++.|++++|+|+.+|..      ..+|+.|++++|+++.++.  +  .+.|++|++++|
T Consensus        40 l~~LdLs~~~L~~lp~-~~~~L~~L~Ls~N~l~~lp~~------~~~L~~L~l~~n~l~~l~~--l--p~~L~~L~L~~n  108 (353)
T d1jl5a_          40 AHELELNNLGLSSLPE-LPPHLESLVASCNSLTELPEL------PQSLKSLLVDNNNLKALSD--L--PPLLEYLGVSNN  108 (353)
T ss_dssp             CSEEECTTSCCSCCCS-CCTTCSEEECCSSCCSSCCCC------CTTCCEEECCSSCCSCCCS--C--CTTCCEEECCSS
T ss_pred             CCEEEeCCCCCCCCCC-CCCCCCEEECCCCCCcccccc------hhhhhhhhhhhcccchhhh--h--cccccccccccc
Confidence            5799999999999997 568999999999999999753      3579999999999998853  1  246999999999


Q ss_pred             CCCCcCCccCccccceeecCCCcccccCc------------------cccCCCCCCCEEEccCCcceeeC
Q psy14765        115 LLSTVPSLIYIPYLKSINLAHNPINQISS------------------YSFQSTPGIRYIDMSNCQIHTIY  166 (269)
Q Consensus       115 ~l~~l~~~~~l~~L~~L~L~~N~i~~~~~------------------~~~~~l~~L~~L~L~~N~l~~~~  166 (269)
                      .++.+|....+++|+.|++++|.+...+.                  ..++.++.++.+++++|.+..++
T Consensus       109 ~l~~lp~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~  178 (353)
T d1jl5a_         109 QLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLP  178 (353)
T ss_dssp             CCSSCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC
T ss_pred             ccccccchhhhccceeeccccccccccccccccccchhhccccccccccccccccceecccccccccccc
Confidence            99999864339999999999998775432                  22445667777887777766544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.98  E-value=3.8e-09  Score=88.59  Aligned_cols=100  Identities=16%  Similarity=0.282  Sum_probs=85.2

Q ss_pred             CCceEEEeecCCccccccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCccCccccceeec
Q psy14765         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINL  133 (269)
Q Consensus        54 ~~l~~L~l~~n~l~~i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~L  133 (269)
                      .++++|+++++.++.+|+.      .++|++|++++|+|+.++.    .+.+|+.|++++|+++.++..  .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~~lp~~------~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~l~~n~l~~l~~l--p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL------PPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDL--PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC------CTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSC--CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCCCCCCC------CCCCCEEECCCCCCccccc----chhhhhhhhhhhcccchhhhh--ccccccccc
Confidence            4688999999999999842      4789999999999999864    256899999999999988742  467999999


Q ss_pred             CCCcccccCccccCCCCCCCEEEccCCcceeeCc
Q psy14765        134 AHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYS  167 (269)
Q Consensus       134 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  167 (269)
                      ++|.+..++.  ++.+++|+.|++++|.++..+.
T Consensus       106 ~~n~l~~lp~--~~~l~~L~~L~l~~~~~~~~~~  137 (353)
T d1jl5a_         106 SNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPD  137 (353)
T ss_dssp             CSSCCSSCCC--CTTCTTCCEEECCSSCCSCCCC
T ss_pred             cccccccccc--hhhhccceeecccccccccccc
Confidence            9999999864  6789999999999999887654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=3.3e-09  Score=80.01  Aligned_cols=79  Identities=23%  Similarity=0.217  Sum_probs=46.8

Q ss_pred             CCCcccEEEcccccccccch--hhhcCCCCCCEEEcCCCCCCCcCCccC--ccccceeecCCCcccccCc-------ccc
Q psy14765         78 GITNIQKLYLRKCKLEFVDD--RAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISS-------YSF  146 (269)
Q Consensus        78 ~l~~L~~L~L~~N~i~~~~~--~~~~~l~~L~~L~L~~N~l~~l~~~~~--l~~L~~L~L~~N~i~~~~~-------~~~  146 (269)
                      .+++|++|++++|+|+.+.+  ..+..+++|+.|++++|.|+.++...+  ...|+.+++++|++.....       ..+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            46667777777777666542  335556667777777777766655433  4456666677666654432       124


Q ss_pred             CCCCCCCEEE
Q psy14765        147 QSTPGIRYID  156 (269)
Q Consensus       147 ~~l~~L~~L~  156 (269)
                      ..+++|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            4556666553

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=8.6e-08  Score=78.64  Aligned_cols=80  Identities=25%  Similarity=0.273  Sum_probs=41.3

Q ss_pred             CCceEEEeecCCccc-cccccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCC-CCCC--cCCccC-cccc
Q psy14765         54 LDTQVLDLSSNNINV-LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN-LLST--VPSLIY-IPYL  128 (269)
Q Consensus        54 ~~l~~L~l~~n~l~~-i~~~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~--l~~~~~-l~~L  128 (269)
                      ..+++|+++++.+.. .....+.  .+++|++|+++++.++......+..+++|+.|+++++ .++.  +..-+. +++|
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~--~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILS--QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHT--TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCEEECCCCccCHHHHHHHHH--hCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            356666666665542 2223344  5566666666666655544455555666666666653 3432  111111 4556


Q ss_pred             ceeecCC
Q psy14765        129 KSINLAH  135 (269)
Q Consensus       129 ~~L~L~~  135 (269)
                      +.|++++
T Consensus       124 ~~L~ls~  130 (284)
T d2astb2         124 DELNLSW  130 (284)
T ss_dssp             CEEECCC
T ss_pred             ccccccc
Confidence            6666655

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=4.1e-08  Score=84.79  Aligned_cols=109  Identities=19%  Similarity=0.269  Sum_probs=79.5

Q ss_pred             CceEEEeecCCccccc-cccccccCCCcccEEEcccccccccc----hhhhcCCCCCCEEEcCCCCCCC-----cCCccC
Q psy14765         55 DTQVLDLSSNNINVLQ-KEIFLQMGITNIQKLYLRKCKLEFVD----DRAFRGVTNMDELDLSDNLLST-----VPSLIY  124 (269)
Q Consensus        55 ~l~~L~l~~n~l~~i~-~~~f~~~~l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~L~~N~l~~-----l~~~~~  124 (269)
                      +|+.||++.|+++... ...+.  .++++++|+|++|.|+...    ..++...++|++|||++|.|+.     +.....
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~--~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLP--LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHH--HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCEEEeeCCcCChHHHHHHHH--hCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            6788999999998543 33344  6788999999999887432    3456788899999999998863     222222


Q ss_pred             --ccccceeecCCCcccccC----ccccCCCCCCCEEEccCCcceee
Q psy14765        125 --IPYLKSINLAHNPINQIS----SYSFQSTPGIRYIDMSNCQIHTI  165 (269)
Q Consensus       125 --l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~L~~N~l~~~  165 (269)
                        ..+|+.|+|++|+++...    +..+..+++|+.|++++|.++..
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~  127 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA  127 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhh
Confidence              357999999999887542    34567788999999999987653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=9.1e-08  Score=71.85  Aligned_cols=77  Identities=25%  Similarity=0.209  Sum_probs=63.2

Q ss_pred             CCceEEEeecCCcccccc--ccccccCCCcccEEEcccccccccchhhhcCCCCCCEEEcCCCCCCCcCCc-------cC
Q psy14765         54 LDTQVLDLSSNNINVLQK--EIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSL-------IY  124 (269)
Q Consensus        54 ~~l~~L~l~~n~l~~i~~--~~f~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~-------~~  124 (269)
                      ++++.|++++|+|+.+++  ..+.  .+++|+.|++++|+|+.+++-.+....+|+.+++++|.+......       ++
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~~~~~~--~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDMSSIVQ--KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGGGTHHH--HSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             CCCCEeeCCCccccCCchhHHHHh--hCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            689999999999998864  4455  789999999999999999876666667899999999999855432       12


Q ss_pred             --ccccceee
Q psy14765        125 --IPYLKSIN  132 (269)
Q Consensus       125 --l~~L~~L~  132 (269)
                        +|+|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence              78888876

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=4.8e-06  Score=67.83  Aligned_cols=148  Identities=14%  Similarity=0.170  Sum_probs=92.3

Q ss_pred             CcEEEcCCCCCcc-cCCCC--CCCceEEEeec-CCccccc-cccccccCCCcccEEEcccc-cccccc-hhhh-cCCCCC
Q psy14765         35 KRTVECIDRNFYT-IPEGI--DLDTQVLDLSS-NNINVLQ-KEIFLQMGITNIQKLYLRKC-KLEFVD-DRAF-RGVTNM  106 (269)
Q Consensus        35 ~~~v~c~~~~l~~-ip~~~--~~~l~~L~l~~-n~l~~i~-~~~f~~~~l~~L~~L~L~~N-~i~~~~-~~~~-~~l~~L  106 (269)
                      -+.++.+++.+.. .+..+  .++|+.|++++ +.++... ...+.  ++++|++|+++++ .++.-. ...+ ...++|
T Consensus        73 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~--~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L  150 (284)
T d2astb2          73 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS--SCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  150 (284)
T ss_dssp             CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH--HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             cccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhH--HHHhccccccccccccccccchhhhccccccc
Confidence            3555555555432 11112  26899999998 4666322 12234  6799999999985 454321 1223 234689


Q ss_pred             CEEEcCCC--CCCC--cCCccC-ccccceeecCCC-cccccCccccCCCCCCCEEEccCC-cceeeCcccccccccCCCe
Q psy14765        107 DELDLSDN--LLST--VPSLIY-IPYLKSINLAHN-PINQISSYSFQSTPGIRYIDMSNC-QIHTIYSEAFYVMVLPGSN  179 (269)
Q Consensus       107 ~~L~L~~N--~l~~--l~~~~~-l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~~l~~  179 (269)
                      +.|++++.  .++.  +..... +++|++|+++++ .++.-....+.++++|++|+++++ .++.-....+...+. ++.
T Consensus       151 ~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~-L~~  229 (284)
T d2astb2         151 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT-LKT  229 (284)
T ss_dssp             CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT-CCE
T ss_pred             chhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCC-CCE
Confidence            99999864  3442  222222 789999999986 476555566778899999999984 666544444555554 677


Q ss_pred             eEEeec
Q psy14765        180 LTLDCR  185 (269)
Q Consensus       180 l~l~~n  185 (269)
                      +.+.+.
T Consensus       230 L~l~~~  235 (284)
T d2astb2         230 LQVFGI  235 (284)
T ss_dssp             EECTTS
T ss_pred             EeeeCC
Confidence            777654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.98  E-value=1.1e-06  Score=73.46  Aligned_cols=136  Identities=13%  Similarity=0.081  Sum_probs=93.3

Q ss_pred             CCceEEEeecCCcccccccc----ccccCCCcccEEEccccccccc-----chhhhcCCCCCCEEEcCCCCCCC-----c
Q psy14765         54 LDTQVLDLSSNNINVLQKEI----FLQMGITNIQKLYLRKCKLEFV-----DDRAFRGVTNMDELDLSDNLLST-----V  119 (269)
Q Consensus        54 ~~l~~L~l~~n~l~~i~~~~----f~~~~l~~L~~L~L~~N~i~~~-----~~~~~~~l~~L~~L~L~~N~l~~-----l  119 (269)
                      +.++.+.+++|.++.-....    +.  ..+.|+.|++++|.|+.-     ....+...++|+.|++++|.++.     +
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~--~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L  235 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQ--SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  235 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHH--HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             cccceeecccccccccccccccchhh--hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccc
Confidence            57899999999887433222    23  467899999999998752     23446678899999999999863     2


Q ss_pred             CCccC-ccccceeecCCCcccccCccc----cCC--CCCCCEEEccCCcceeeCcccc----c-ccccCCCeeEEeeccc
Q psy14765        120 PSLIY-IPYLKSINLAHNPINQISSYS----FQS--TPGIRYIDMSNCQIHTIYSEAF----Y-VMVLPGSNLTLDCRVQ  187 (269)
Q Consensus       120 ~~~~~-l~~L~~L~L~~N~i~~~~~~~----~~~--l~~L~~L~L~~N~l~~~~~~~~----~-~l~~~l~~l~l~~n~~  187 (269)
                      ...+. .++|+.|++++|.|+......    +..  ...|+.|++++|.++.-....+    . ..+ .+..+.+++|.+
T Consensus       236 ~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~-~L~~L~l~~N~~  314 (344)
T d2ca6a1         236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP-DLLFLELNGNRF  314 (344)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT-TCCEEECTTSBS
T ss_pred             cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCC-CCCEEECCCCcC
Confidence            22222 788999999999987543222    222  3679999999999875322211    1 222 368899999887


Q ss_pred             cCCCc
Q psy14765        188 SATPC  192 (269)
Q Consensus       188 ~~~~~  192 (269)
                      ..-..
T Consensus       315 ~~~~~  319 (344)
T d2ca6a1         315 SEEDD  319 (344)
T ss_dssp             CTTSH
T ss_pred             CCcch
Confidence            65443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.95  E-value=1.3e-06  Score=73.22  Aligned_cols=179  Identities=14%  Similarity=0.167  Sum_probs=117.4

Q ss_pred             CcEEEcCCCCCccc-----CCCC--CCCceEEEeecCCcc-c----cccc--------cccccCCCcccEEEcccccccc
Q psy14765         35 KRTVECIDRNFYTI-----PEGI--DLDTQVLDLSSNNIN-V----LQKE--------IFLQMGITNIQKLYLRKCKLEF   94 (269)
Q Consensus        35 ~~~v~c~~~~l~~i-----p~~~--~~~l~~L~l~~n~l~-~----i~~~--------~f~~~~l~~L~~L~L~~N~i~~   94 (269)
                      -+.++++++.+...     ...+  .++++.|++++|.+. .    +...        ...  +.+.|+.+.+++|.++.
T Consensus        95 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~--~~~~L~~l~l~~n~i~~  172 (344)
T d2ca6a1          95 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAK--NAPPLRSIICGRNRLEN  172 (344)
T ss_dssp             CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHH--TCCCCCEEECCSSCCTG
T ss_pred             cccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccc--cCcccceeecccccccc
Confidence            56899998887642     1111  278999999999864 1    1111        112  56789999999999875


Q ss_pred             cch----hhhcCCCCCCEEEcCCCCCCC------cCCccC-ccccceeecCCCcccccC----ccccCCCCCCCEEEccC
Q psy14765         95 VDD----RAFRGVTNMDELDLSDNLLST------VPSLIY-IPYLKSINLAHNPINQIS----SYSFQSTPGIRYIDMSN  159 (269)
Q Consensus        95 ~~~----~~~~~l~~L~~L~L~~N~l~~------l~~~~~-l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~L~~  159 (269)
                      -..    ..+...+.|+.|++++|.+..      +..... .++|+.|++++|.++...    ...+...++|+.|+|++
T Consensus       173 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~  252 (344)
T d2ca6a1         173 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND  252 (344)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             cccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhc
Confidence            332    335567899999999999873      122222 788999999999986431    23466789999999999


Q ss_pred             CcceeeCccccc----cc-ccCCCeeEEeeccccCCCccccc--ee-cccccccccccCccccc
Q psy14765        160 CQIHTIYSEAFY----VM-VLPGSNLTLDCRVQSATPCRIMW--SI-NRKIYDHVNWNSNKINI  215 (269)
Q Consensus       160 N~l~~~~~~~~~----~l-~~~l~~l~l~~n~~~~~~~~~~~--~~-~~~~l~~l~~~~n~~~~  215 (269)
                      |.|+......+.    .. ...+..+++++|.++........  +. +...++.+++++|.+..
T Consensus       253 n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         253 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             CccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            998764333321    11 12368899999876542111111  10 22347778888888753

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=9.8e-07  Score=75.83  Aligned_cols=152  Identities=16%  Similarity=0.089  Sum_probs=95.0

Q ss_pred             CcEEEcCCCCCcccCCC-------CCCCceEEEeecCCcccccc-----ccccccCCCcccEEEcccccccccchhh---
Q psy14765         35 KRTVECIDRNFYTIPEG-------IDLDTQVLDLSSNNINVLQK-----EIFLQMGITNIQKLYLRKCKLEFVDDRA---   99 (269)
Q Consensus        35 ~~~v~c~~~~l~~ip~~-------~~~~l~~L~l~~n~l~~i~~-----~~f~~~~l~~L~~L~L~~N~i~~~~~~~---   99 (269)
                      -..++.+++.+...+..       ..+.++.+++++|.++....     ..+.  ..+.|+.++++++.++......   
T Consensus       257 l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~--~~~~L~~l~l~~~~l~~~~~~~l~~  334 (460)
T d1z7xw1         257 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE--PGCQLESLWVKSCSFTAACCSHFSS  334 (460)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTS--TTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccchhhccccc--cccccccccccccchhhhhhhhccc
Confidence            45677777766532211       12678889999998863221     1222  3467899999998887654333   


Q ss_pred             -hcCCCCCCEEEcCCCCCCC-----cCCccC--ccccceeecCCCcccccC----ccccCCCCCCCEEEccCCcceeeCc
Q psy14765        100 -FRGVTNMDELDLSDNLLST-----VPSLIY--IPYLKSINLAHNPINQIS----SYSFQSTPGIRYIDMSNCQIHTIYS  167 (269)
Q Consensus       100 -~~~l~~L~~L~L~~N~l~~-----l~~~~~--l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~  167 (269)
                       +...++|++|+|++|.++.     +.....  .+.|+.|+|++|.|+...    ...+...++|++|+|++|.|+.-..
T Consensus       335 ~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~  414 (460)
T d1z7xw1         335 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI  414 (460)
T ss_dssp             HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHH
T ss_pred             ccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHH
Confidence             3455689999999998863     222222  456899999999887532    2335566889999999998875322


Q ss_pred             ccc-ccc---ccCCCeeEEeecccc
Q psy14765        168 EAF-YVM---VLPGSNLTLDCRVQS  188 (269)
Q Consensus       168 ~~~-~~l---~~~l~~l~l~~n~~~  188 (269)
                      ..+ ..+   ...++.+.+..+.+.
T Consensus       415 ~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         415 LQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             HHHHHHHHhCCCccCEEECCCCCCC
Confidence            222 111   112567777766543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.18  E-value=6.9e-05  Score=55.79  Aligned_cols=88  Identities=15%  Similarity=0.160  Sum_probs=44.9

Q ss_pred             CCcccEEEcccc-cccccc----hhhhcCCCCCCEEEcCCCCCCCc--CCc--cC--ccccceeecCCCcccccC----c
Q psy14765         79 ITNIQKLYLRKC-KLEFVD----DRAFRGVTNMDELDLSDNLLSTV--PSL--IY--IPYLKSINLAHNPINQIS----S  143 (269)
Q Consensus        79 l~~L~~L~L~~N-~i~~~~----~~~~~~l~~L~~L~L~~N~l~~l--~~~--~~--l~~L~~L~L~~N~i~~~~----~  143 (269)
                      .++|+.|+|+++ .++.-.    ..++...++|+.|++++|.+..-  ..-  ..  .+.|+.|++++|.++.-.    .
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            355666666542 343211    12344455566666666666521  110  11  455666666666665321    1


Q ss_pred             cccCCCCCCCEEEccCCcceeeC
Q psy14765        144 YSFQSTPGIRYIDMSNCQIHTIY  166 (269)
Q Consensus       144 ~~~~~l~~L~~L~L~~N~l~~~~  166 (269)
                      ..+...+.|+.|++++|.+..+.
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g  116 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLG  116 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCC
T ss_pred             HHHHhCCcCCEEECCCCcCCCcc
Confidence            23445566777777766665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.97  E-value=0.00036  Score=51.69  Aligned_cols=107  Identities=8%  Similarity=0.149  Sum_probs=72.8

Q ss_pred             CCceEEEeec-CCccc--cc--cccccccCCCcccEEEcccccccccc----hhhhcCCCCCCEEEcCCCCCCCcCC---
Q psy14765         54 LDTQVLDLSS-NNINV--LQ--KEIFLQMGITNIQKLYLRKCKLEFVD----DRAFRGVTNMDELDLSDNLLSTVPS---  121 (269)
Q Consensus        54 ~~l~~L~l~~-n~l~~--i~--~~~f~~~~l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~L~~N~l~~l~~---  121 (269)
                      +.++.|++++ +.++.  +.  ...+.  ..+.|+.|++++|.+..-.    ...+...+.|+.|++++|.++.-..   
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~--~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAAC--NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHT--TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHh--hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            6799999987 45652  11  11232  4578999999999987432    2344556889999999999884221   


Q ss_pred             --ccC-ccccceeecCCCcccccCc-------cccCCCCCCCEEEccCCcc
Q psy14765        122 --LIY-IPYLKSINLAHNPINQISS-------YSFQSTPGIRYIDMSNCQI  162 (269)
Q Consensus       122 --~~~-l~~L~~L~L~~N~i~~~~~-------~~~~~l~~L~~L~L~~N~l  162 (269)
                        .+. .+.|+.|++++|.+..+..       ..+..-+.|+.|+++.+..
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence              122 5779999999998765532       2334457888888876643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.75  E-value=0.0017  Score=47.62  Aligned_cols=40  Identities=13%  Similarity=0.162  Sum_probs=19.8

Q ss_pred             CCCcccEEEcccccccccch----hhhcCCCCCCEEEcCCCCCC
Q psy14765         78 GITNIQKLYLRKCKLEFVDD----RAFRGVTNMDELDLSDNLLS  117 (269)
Q Consensus        78 ~l~~L~~L~L~~N~i~~~~~----~~~~~l~~L~~L~L~~N~l~  117 (269)
                      ..+.|+.|++++|.++.-..    ..+...++++.+++++|.+.
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            34555666666665543221    22333455556666555554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.57  E-value=0.023  Score=41.20  Aligned_cols=87  Identities=13%  Similarity=0.169  Sum_probs=58.6

Q ss_pred             CCCcccEEEccc-ccccccc----hhhhcCCCCCCEEEcCCCCCCCcC-----CccC-ccccceeecCCCcccccC----
Q psy14765         78 GITNIQKLYLRK-CKLEFVD----DRAFRGVTNMDELDLSDNLLSTVP-----SLIY-IPYLKSINLAHNPINQIS----  142 (269)
Q Consensus        78 ~l~~L~~L~L~~-N~i~~~~----~~~~~~l~~L~~L~L~~N~l~~l~-----~~~~-l~~L~~L~L~~N~i~~~~----  142 (269)
                      +.++|++|++++ +.|+.-.    ..++...+.|++|++++|.++.-.     .... .+.++.+++++|.++.-.    
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            568899999987 4565322    244567889999999999987321     1111 688999999999876332    


Q ss_pred             ccccCCCCCCCEEEcc--CCccee
Q psy14765        143 SYSFQSTPGIRYIDMS--NCQIHT  164 (269)
Q Consensus       143 ~~~~~~l~~L~~L~L~--~N~l~~  164 (269)
                      ...+...++|+.++|+  +|.+..
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~  118 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGN  118 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             HHHHHhCccccEEeeccCCCcCcH
Confidence            2335566788876654  566644

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.08  E-value=0.15  Score=32.62  Aligned_cols=72  Identities=15%  Similarity=0.106  Sum_probs=41.1

Q ss_pred             cCCCeeEEeeccccCCCccccceecccccccccccC---ccccccccceeecCCCeeeeeeccceeeeecCCCcc
Q psy14765        175 LPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNS---NKINIKEETVLSKDNSYLSVFSGGVDLAAASSPGGE  246 (269)
Q Consensus       175 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~---n~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~  246 (269)
                      ..++.+.|.|...+.+++.+.|..+...+..-....   ....+.-..+...+....+.|.+.|..|.+.....+
T Consensus        15 ~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~~l   89 (92)
T d2ifga1          15 DVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQV   89 (92)
T ss_dssp             BTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECC
T ss_pred             eCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcCCCEEEEEEEE
Confidence            347899999999999999999998764333211100   011111122223333335677777766666544443

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=83.31  E-value=0.28  Score=31.14  Aligned_cols=26  Identities=27%  Similarity=0.431  Sum_probs=22.0

Q ss_pred             cCCCeeEEeeccccCCCccccceecc
Q psy14765        175 LPGSNLTLDCRVQSATPCRIMWSINR  200 (269)
Q Consensus       175 ~~l~~l~l~~n~~~~~~~~~~~~~~~  200 (269)
                      ..++.+.|.|...+.+++.+.|..+.
T Consensus        18 ~~G~~v~l~C~~~g~P~p~i~W~k~~   43 (91)
T d1cs6a3          18 LTGQMVTLECFAFGNPVPQIKWRKLD   43 (91)
T ss_dssp             ETTCCEEEECEEEEESCCEEEEEECC
T ss_pred             ecCCcEEEEEEEEEccCCEEEEEecc
Confidence            34689999999999999999998743

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.03  E-value=0.19  Score=31.70  Aligned_cols=26  Identities=12%  Similarity=0.022  Sum_probs=22.5

Q ss_pred             CCCeeEEeeccccCCCccccceeccc
Q psy14765        176 PGSNLTLDCRVQSATPCRIMWSINRK  201 (269)
Q Consensus       176 ~l~~l~l~~n~~~~~~~~~~~~~~~~  201 (269)
                      .++.+.|.|...+.+.+.+.|..+..
T Consensus        18 ~G~~~~l~C~a~G~P~P~v~W~k~g~   43 (84)
T d2oz4a3          18 ENSQQTPMCQAWGNPLPELKCLKDGT   43 (84)
T ss_dssp             TTCEECCCCCCEEESCCEEEEEETTT
T ss_pred             CCCEEEEEEEEeEcCccEEEEEEeec
Confidence            47899999999999999999997643

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.61  E-value=0.38  Score=29.97  Aligned_cols=25  Identities=20%  Similarity=0.243  Sum_probs=22.3

Q ss_pred             CCCeeEEeeccccCCCccccceecc
Q psy14765        176 PGSNLTLDCRVQSATPCRIMWSINR  200 (269)
Q Consensus       176 ~l~~l~l~~n~~~~~~~~~~~~~~~  200 (269)
                      .++.+.|.|...+.++|.+.|..+.
T Consensus        13 ~G~~~~L~C~~~g~p~P~i~W~~~~   37 (84)
T d2nxyb2          13 QGQSLTLTLESPPGSSPSVQCRSPR   37 (84)
T ss_dssp             TTCCEEEEEECCTTCCCEEEEECTT
T ss_pred             CCCeEEEEEEeEcCCchheEEEeec
Confidence            4799999999999999999999753

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.52  E-value=1  Score=28.77  Aligned_cols=28  Identities=25%  Similarity=0.380  Sum_probs=23.4

Q ss_pred             CCCeeEEeeccccCCCccccceeccccc
Q psy14765        176 PGSNLTLDCRVQSATPCRIMWSINRKIY  203 (269)
Q Consensus       176 ~l~~l~l~~n~~~~~~~~~~~~~~~~~l  203 (269)
                      .++.+.|.|...+.+++.+.|..+...+
T Consensus        14 ~G~~~~l~C~v~g~p~p~v~W~k~~~~l   41 (101)
T d2cqva1          14 AGESVELFGKVTGTQPITCTWMKFRKQI   41 (101)
T ss_dssp             TTCCEEEEEEEESSSSCEEEEEESSSBC
T ss_pred             CCCcEEEEEEEEecCCCEEEEEeCceee
Confidence            3688999999988999999999876544

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.02  E-value=0.4  Score=30.21  Aligned_cols=26  Identities=15%  Similarity=0.395  Sum_probs=22.3

Q ss_pred             CCCeeEEeeccccCCCccccceeccc
Q psy14765        176 PGSNLTLDCRVQSATPCRIMWSINRK  201 (269)
Q Consensus       176 ~l~~l~l~~n~~~~~~~~~~~~~~~~  201 (269)
                      .+..+.|.|...+.+++.+.|..+..
T Consensus        15 ~G~~v~l~C~~~g~p~p~i~W~~~~~   40 (90)
T d1vcaa2          15 IGDSVSLTCSTTGCESPFFSWRTQID   40 (90)
T ss_dssp             TTSCEEEEEEEESCSSCEEEEEETTC
T ss_pred             CCCEEEEEEeccCCCCceEEEEecCc
Confidence            37899999999999999999987543