Psyllid ID: psy14777

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MMTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSKSAMLTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSKSTGGKLVDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIEPQVSRS
Secondary Structure (PSIPRED)
cccccEEEEEEccHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccHHHHHHHHHHHHHHHHccccEEEcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MMTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSeyksksamltpqLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSeykskstggklvdptpEIERELKADLSKTAkqyggdgkedmtkfpnfqfpepkiepqvsrs
Flexible Loop (DISEMBL)
MMTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSKSAMLTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSeykskstggklvdptpeiERELKADLSKTAKqyggdgkedmtkfpnfqfpepkiepqvsrs
Low Complexity Region (SEG)
MMTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSKSAMLTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSKSTGGKLVDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIEPQVSRS
Disordered region (IsUnstruct)
*****LFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSKSAMLTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDK***************************************************************
Disordered Region (DISOPRED)
**TPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSKSAMLTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLS********************E**ADLSKTAKQYGGDGKEDMTKFPNFQFPEPKI*******
Disordered Region (DISEMBL)
MMTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSKSAMLTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSKSTGGKLVDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIEPQVSRS
Disordered Region (DISPRO)
**TPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSKSAMLTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSKSTGGKLVDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIE******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSKSAMLTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSKSTGGKLVDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIEPQVSRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	158	2.2.26 [Sep-21-2011]
Q24407	106	ATP synthase-coupling fac	yes	N/A	0.518	0.773	0.646	2e-25
Q5RBY3	107	ATP synthase-coupling fac	yes	N/A	0.575	0.850	0.442	5e-14
Q8SPH6	108	ATP synthase-coupling fac	N/A	N/A	0.563	0.824	0.430	6e-14
P18859	108	ATP synthase-coupling fac	yes	N/A	0.613	0.898	0.413	1e-13
P21571	108	ATP synthase-coupling fac	yes	N/A	0.556	0.814	0.436	2e-13
P02721	108	ATP synthase-coupling fac	yes	N/A	0.613	0.898	0.394	5e-13
P97450	108	ATP synthase-coupling fac	yes	N/A	0.556	0.814	0.425	1e-12
P13618	76	ATP synthase-coupling fac	no	N/A	0.405	0.842	0.470	4e-09

>sp|Q24407|ATP5J_DROME ATP synthase-coupling factor 6, mitochondrial OS=Drosophila melanogaster GN=ATPsyn-Cf6 PE=3 SV=1

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/82 (64%), Positives = 61/82 (74%)

Query: 72  RNLATSYVALKNASDPIQQLFLDKLSEYKSKSTGGKLVDPTPEIERELKADLSKTAKQYG 131
           RN      AL  ASDPIQQLFLDK+ EYK KS GGKLVD  P+IERELK +L + AKQ+G
Sbjct: 19  RNFGIVAPALNKASDPIQQLFLDKVREYKQKSAGGKLVDSNPDIERELKTELDRVAKQFG 78

Query: 132 GDGKEDMTKFPNFQFPEPKIEP 153
            DGK DM KFP FQFP+ K++P
Sbjct: 79  SDGKTDMLKFPEFQFPDVKVDP 100

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.
Drosophila melanogaster (taxid: 7227)

>sp|Q5RBY3|ATP5J_PONAB ATP synthase-coupling factor 6, mitochondrial OS=Pongo abelii GN=ATP5J PE=3 SV=1

 Score = 77.0 bits (188), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/95 (44%), Positives = 56/95 (58%), Gaps = 4/95 (4%)

Query: 59  FVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSK-STGGKLVDPTPEIER 117
           F  +R  VS  L RN+  + VA     DPIQ+LF+DK+ EYKSK  T G  VD  PE ++
Sbjct: 9   FSVIRSAVSVYLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGPVDAGPEYQQ 68

Query: 118 ELKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIE 152
           EL+ +L K  + +G     DM  FP F+F +PK E
Sbjct: 69  ELEKELFKLKQMFGN---ADMNTFPAFKFEDPKFE 100

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements. Also involved in the restoration of oligomycin-sensitive ATPase activity to depleted F1-F0 complexes.

Pongo abelii (taxid: 9601)

>sp|Q8SPH6|ATP5J_MACFA ATP synthase-coupling factor 6, mitochondrial OS=Macaca fascicularis GN=ATP5J PE=3 SV=1

 Score = 76.6 bits (187), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 56/93 (60%), Gaps = 4/93 (4%)

Query: 61  CVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSK-STGGKLVDPTPEIEREL 119
            +R  VS +  RN+  + VA     DP+Q+LF+DK+ EYKSK  T G  VD  PE ++EL
Sbjct: 12  IIRSAVSVHFRRNIGVTAVAFNKELDPVQKLFVDKIREYKSKRQTSGGPVDTGPEYQQEL 71

Query: 120 KADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIE 152
           + +L K  + +   GK DM  FP F+F +PK E
Sbjct: 72  EKELFKLKQMF---GKADMNTFPTFKFEDPKFE 101

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements. Also involved in the restoration of oligomycin-sensitive ATPase activity to depleted F1-F0 complexes.

Macaca fascicularis (taxid: 9541)

>sp|P18859|ATP5J_HUMAN ATP synthase-coupling factor 6, mitochondrial OS=Homo sapiens GN=ATP5J PE=1 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 7/104 (6%)

Query: 53  MLTPQLF---VCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSK-STGGKL 108
           M+  +LF     +R  VS +L RN+  + VA     DPIQ+LF+DK+ EYKSK  T G  
Sbjct: 1   MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGP 60

Query: 109 VDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIE 152
           VD + E ++EL+ +L K  + +G     DM  FP F+F +PK E
Sbjct: 61  VDASSEYQQELERELFKLKQMFGN---ADMNTFPTFKFEDPKFE 101

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements. Also involved in the restoration of oligomycin-sensitive ATPase activity to depleted F1-F0 complexes.

Homo sapiens (taxid: 9606)

>sp|P21571|ATP5J_RAT ATP synthase-coupling factor 6, mitochondrial OS=Rattus norvegicus GN=Atp5j PE=1 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 58/94 (61%), Gaps = 6/94 (6%)

Query: 61  CVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSK--STGGKLVDPTPEIERE 118
            +R  VS +L RN+  + VA     DP+Q+LFLDK+ EYK+K  ++GG  VD  PE ++E
Sbjct: 12  VLRSAVSVHLRRNIGVTAVAFNKELDPVQKLFLDKIREYKAKRLASGGP-VDTGPEYQQE 70

Query: 119 LKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIE 152
           +  +L K  + Y   GK +M KFP F F +PK E
Sbjct: 71  VDRELFKLKQMY---GKGEMDKFPTFNFEDPKFE 101

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements. Also involved in the restoration of oligomycin-sensitive ATPase activity to depleted F1-F0 complexes.

Rattus norvegicus (taxid: 10116)

>sp|P02721|ATP5J_BOVIN ATP synthase-coupling factor 6, mitochondrial OS=Bos taurus GN=ATP5J PE=1 SV=2

 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 60/104 (57%), Gaps = 7/104 (6%)

Query: 53  MLTPQLF---VCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSK-STGGKL 108
           M+  +LF     V+  +S +  RN+  + VA     DP+Q+LF+DK+ EY++K  T G  
Sbjct: 1   MILQRLFRLSSAVQSAISVSWRRNIGITAVAFNKELDPVQKLFVDKIREYRTKRQTSGGP 60

Query: 109 VDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIE 152
           VD  PE +++L  +L K  + Y   GK DM  FPNF F +PK E
Sbjct: 61  VDAGPEYQQDLDRELFKLKQMY---GKADMNTFPNFTFEDPKFE 101

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements. Also involved in the restoration of oligomycin-sensitive ATPase activity to depleted F1-F0 complexes.

Bos taurus (taxid: 9913)

>sp|P97450|ATP5J_MOUSE ATP synthase-coupling factor 6, mitochondrial OS=Mus musculus GN=Atp5j PE=1 SV=1

 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 58/94 (61%), Gaps = 6/94 (6%)

Query: 61  CVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSK--STGGKLVDPTPEIERE 118
            +R  VS +L RN+  + VA     DP+Q+LF+DK+ EYKSK  ++GG  VD  PE +++
Sbjct: 12  VLRSAVSVHLKRNIGVTAVAFNKELDPVQKLFVDKIREYKSKRQASGGP-VDIGPEYQQD 70

Query: 119 LKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIE 152
           L  +L K  + Y   GK +M  FP F+F +PK E
Sbjct: 71  LDRELYKLKQMY---GKGEMDTFPTFKFDDPKFE 101

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements. Also involved in the restoration of oligomycin-sensitive ATPase activity to depleted F1-F0 complexes.

Mus musculus (taxid: 10090)

>sp|P13618|ATP5J_PIG ATP synthase-coupling factor 6, mitochondrial OS=Sus scrofa GN=ATP5J PE=1 SV=1

 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 86  DPIQQLFLDKLSEYKSK-STGGKLVDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNF 144
           DP+Q+LF+DK+ EY++K  T G  VD  PE +++L  +L K  + YG   K DM  FPNF
Sbjct: 5   DPVQKLFVDKIREYRTKRQTSGGPVDAGPEYQQDLDRELFKLKQMYG---KADMNTFPNF 61

Query: 145 QFPEPKIE 152
            F +PK E
Sbjct: 62  TFEDPKFE 69

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements. Also involved in the restoration of oligomycin-sensitive ATPase activity to depleted F1-F0 complexes.

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
269146718	105	ATPase coupling factor 6 [Simulium nigri	0.632	0.952	0.603	3e-27
195039116	106	GH18020 [Drosophila grimshawi] gi|193895	0.632	0.943	0.594	8e-26
194742878	106	GF18010 [Drosophila ananassae] gi|190626	0.632	0.943	0.584	3e-25
195107750	106	GI23616 [Drosophila mojavensis] gi|19391	0.632	0.943	0.574	4e-25
56417584	106	mitochondrial ATP synthase coupling fact	0.632	0.943	0.603	6e-25
195388612	106	GJ23589 [Drosophila virilis] gi|19415105	0.632	0.943	0.584	8e-25
157132079	106	coupling factor, putative [Aedes aegypti	0.632	0.943	0.594	1e-24
195446442	106	GK12240 [Drosophila willistoni] gi|19416	0.632	0.943	0.584	2e-24
219842400	106	mitochondrial ATP synthase coupling fact	0.632	0.943	0.594	5e-24
58386971	107	AGAP004616-PA [Anopheles gambiae str. PE	0.632	0.934	0.592	8e-24

>gi|269146718|gb|ACZ28305.1| ATPase coupling factor 6 [Simulium nigrimanum]

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/101 (60%), Positives = 76/101 (75%), Gaps = 1/101 (0%)

Query: 53  MLTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSKSTGGKLVDPT 112
           M++ QL   VR   SQ L+RN   +  AL+  SDPIQQLF+DK+ EYKSKS GG LV+PT
Sbjct: 1   MISTQLLSGVRAVRSQ-LSRNFGIAAPALQKVSDPIQQLFVDKVREYKSKSKGGALVEPT 59

Query: 113 PEIERELKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIEP 153
           P+IEREL+A+L K +KQYGG G  DMTKFP F+F EPK++P
Sbjct: 60  PDIERELRAELEKLSKQYGGGGSVDMTKFPEFKFGEPKVDP 100

Source: Simulium nigrimanum

Species: Simulium nigrimanum

Genus: Simulium

Family: Simuliidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195039116|ref|XP_001990864.1| GH18020 [Drosophila grimshawi] gi|193895060|gb|EDV93926.1| GH18020 [Drosophila grimshawi]

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 72/101 (71%), Gaps = 1/101 (0%)

Query: 53  MLTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSKSTGGKLVDPT 112
           MLT  +   VR  +   + RN+A +  AL  ASDPIQQLFLDK+ EYK KS GGK+VD  
Sbjct: 1   MLTQSILSGVRV-LRTEMRRNIAIAAPALNKASDPIQQLFLDKVREYKQKSAGGKMVDSN 59

Query: 113 PEIERELKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIEP 153
           PEIERELK +L + AKQYG DGK DM KFP F+FP+ KI+P
Sbjct: 60  PEIERELKNELERVAKQYGSDGKTDMLKFPEFKFPDVKIDP 100

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194742878|ref|XP_001953927.1| GF18010 [Drosophila ananassae] gi|190626964|gb|EDV42488.1| GF18010 [Drosophila ananassae]

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/101 (58%), Positives = 73/101 (72%), Gaps = 1/101 (0%)

Query: 53  MLTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSKSTGGKLVDPT 112
           ML+  L   +R  +     RN+A    AL  ASDPIQQLFLDK+ EYK KS+GGKLVDP 
Sbjct: 1   MLSQSLLTGMRV-LRTEARRNIAIVAPALNKASDPIQQLFLDKVREYKQKSSGGKLVDPN 59

Query: 113 PEIERELKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIEP 153
           PEIERE+K +L + AKQ+G DGK D TKFP+F+FP+ KI+P
Sbjct: 60  PEIEREIKNELDRVAKQFGSDGKTDFTKFPDFKFPDVKIDP 100

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195107750|ref|XP_001998471.1| GI23616 [Drosophila mojavensis] gi|193915065|gb|EDW13932.1| GI23616 [Drosophila mojavensis]

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 71/101 (70%), Gaps = 1/101 (0%)

Query: 53  MLTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSKSTGGKLVDPT 112
           ML+  +   +R  +     RN+A    AL  ASDPIQQLFLDK+ EYK KS GGK+VDP 
Sbjct: 1   MLSQSILTGIRV-LRTEARRNIAIVAPALNKASDPIQQLFLDKVREYKQKSAGGKMVDPN 59

Query: 113 PEIERELKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIEP 153
           PEIE+ELK +L + AKQYG DGK DM KFP F+FP+ KI+P
Sbjct: 60  PEIEKELKNELERVAKQYGSDGKTDMLKFPEFKFPDVKIDP 100

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|56417584|gb|AAV90733.1| mitochondrial ATP synthase coupling factor 6 precursor [Aedes albopictus]

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 61/101 (60%), Positives = 71/101 (70%), Gaps = 1/101 (0%)

Query: 53  MLTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSKSTGGKLVDPT 112
           MLT Q+    R   +Q   RN   S V L  A+DPIQQLF++KL +YKSKS+GGKLVDPT
Sbjct: 1   MLTNQIQQAARMLGAQ-ARRNYGVSAVVLSKATDPIQQLFVNKLRDYKSKSSGGKLVDPT 59

Query: 113 PEIERELKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIEP 153
           PEIERELK +L K AKQYGG    DMT FP F+F EPK+ P
Sbjct: 60  PEIERELKQELEKLAKQYGGASGVDMTAFPTFKFEEPKMGP 100

Source: Aedes albopictus

Species: Aedes albopictus

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195388612|ref|XP_002052973.1| GJ23589 [Drosophila virilis] gi|194151059|gb|EDW66493.1| GJ23589 [Drosophila virilis]

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 59/101 (58%), Positives = 70/101 (69%), Gaps = 1/101 (0%)

Query: 53  MLTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSKSTGGKLVDPT 112
           ML+  +   VR  +     RN+A    AL  ASDPIQQLFLDK+ EYK KS GGK+VD  
Sbjct: 1   MLSQSILTGVRV-LRTEARRNIAIVAPALNKASDPIQQLFLDKVREYKQKSAGGKMVDSN 59

Query: 113 PEIERELKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIEP 153
           PEIERELK +L + AKQYG DGK DM KFP F+FP+ KI+P
Sbjct: 60  PEIERELKNELERVAKQYGSDGKTDMLKFPEFKFPDVKIDP 100

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157132079|ref|XP_001662452.1| coupling factor, putative [Aedes aegypti] gi|108881737|gb|EAT45962.1| AAEL002813-PA [Aedes aegypti]

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 71/101 (70%), Gaps = 1/101 (0%)

Query: 53  MLTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSKSTGGKLVDPT 112
           MLT Q+    R   +Q   RN   S V L  A+DPIQQLF++KL +YKSKS+GGKLVD T
Sbjct: 1   MLTNQIQQAARMMGAQ-ARRNYGVSAVVLSKATDPIQQLFINKLRDYKSKSSGGKLVDAT 59

Query: 113 PEIERELKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIEP 153
           PEIERELK +L K AKQYGG    DMT FP+F+F EPK+ P
Sbjct: 60  PEIERELKQELEKLAKQYGGASGVDMTAFPSFKFEEPKMGP 100

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195446442|ref|XP_002070782.1| GK12240 [Drosophila willistoni] gi|194166867|gb|EDW81768.1| GK12240 [Drosophila willistoni]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/101 (58%), Positives = 71/101 (70%), Gaps = 1/101 (0%)

Query: 53  MLTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSKSTGGKLVDPT 112
           MLT  +   VR  +     RN+A    AL  ASDPIQQLFLDK+ +YK KS+GGKLVD  
Sbjct: 1   MLTQTILNGVRV-LRTEARRNIAIVAPALNKASDPIQQLFLDKVRDYKQKSSGGKLVDSN 59

Query: 113 PEIERELKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIEP 153
           PEIERELK +L + AKQ+G DGK DM KFP F+FPE K++P
Sbjct: 60  PEIERELKNELERVAKQFGSDGKTDMLKFPEFKFPEVKVDP 100

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|219842400|gb|ACL37991.1| mitochondrial ATP synthase coupling factor 6 precursor [Ochlerotatus taeniorhynchus]

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 53  MLTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSKSTGGKLVDPT 112
           MLT Q+    R   +Q   RN   S V L  A+DPIQQLF++KL +YKSKS GGKLVD T
Sbjct: 1   MLTNQIQQAARMLGAQ-ARRNYGVSAVVLSKATDPIQQLFVNKLRDYKSKSAGGKLVDAT 59

Query: 113 PEIERELKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIEP 153
           PEIERELK +L K AKQYGG    DMT FP F+F EPK+ P
Sbjct: 60  PEIERELKQELEKLAKQYGGASGVDMTAFPTFKFEEPKLGP 100

Source: Ochlerotatus taeniorhynchus

Species: Ochlerotatus taeniorhynchus

Genus: Ochlerotatus

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58386971|ref|XP_315204.2| AGAP004616-PA [Anopheles gambiae str. PEST] gi|55239541|gb|EAA10598.2| AGAP004616-PA [Anopheles gambiae str. PEST]

 Score =  115 bits (287), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 61/103 (59%), Positives = 69/103 (66%), Gaps = 3/103 (2%)

Query: 53  MLTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEY--KSKSTGGKLVD 110
           MLT Q+    R  V     RN   S V L  ASDPIQQLF+ KL EY  KS+S GGKLVD
Sbjct: 1   MLTNQILSAARI-VGLQTRRNYGVSAVLLAKASDPIQQLFVTKLREYAQKSQSAGGKLVD 59

Query: 111 PTPEIERELKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIEP 153
            TPEI+RELK ++ K AKQYGG   EDMT FP F+F EPKI+P
Sbjct: 60  ATPEIQRELKQEMEKLAKQYGGGQGEDMTAFPAFKFEEPKIDP 102

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
FB|FBgn0016119	106	ATPsyn-Cf6 "ATPase coupling fa	0.518	0.773	0.646	1.2e-24
UNIPROTKB|Q8SPH6	108	ATP5J "ATP synthase-coupling f	0.556	0.814	0.434	6.9e-15
UNIPROTKB|E2RL03	110	ATP5J "Uncharacterized protein	0.556	0.8	0.423	6.9e-15
UNIPROTKB|Q5RBY3	107	ATP5J "ATP synthase-coupling f	0.575	0.850	0.442	1.1e-14
UNIPROTKB|I3L6G6	108	LOC100622245 "Uncharacterized	0.556	0.814	0.423	1.4e-14
RGD|621376	108	Atp5j "ATP synthase, H+ transp	0.550	0.805	0.440	1.8e-14
UNIPROTKB|P18859	108	ATP5J "ATP synthase-coupling f	0.556	0.814	0.434	2.3e-14
UNIPROTKB|E1C4V1	107	ATP5J "ATP synthase-coupling f	0.544	0.803	0.446	2.3e-14
UNIPROTKB|P02721	108	ATP5J "ATP synthase-coupling f	0.588	0.861	0.402	6.2e-14
FB|FBgn0035585	147	CG12027 [Drosophila melanogast	0.5	0.537	0.481	6.2e-14

FB|FBgn0016119 ATPsyn-Cf6 "ATPase coupling factor 6" [Drosophila melanogaster (taxid:7227)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 53/82 (64%), Positives = 61/82 (74%)

Query:    72 RNLATSYVALKNASDPIQQLFLDKLSEYKSKSTGGKLVDPTPEIERELKADLSKTAKQYG 131
             RN      AL  ASDPIQQLFLDK+ EYK KS GGKLVD  P+IERELK +L + AKQ+G
Sbjct:    19 RNFGIVAPALNKASDPIQQLFLDKVREYKQKSAGGKLVDSNPDIERELKTELDRVAKQFG 78

Query:   132 GDGKEDMTKFPNFQFPEPKIEP 153
              DGK DM KFP FQFP+ K++P
Sbjct:    79 SDGKTDMLKFPEFQFPDVKVDP 100

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISS;NAS

GO:0015992 "proton transport" evidence=ISS;NAS

GO:0005756 "mitochondrial proton-transporting ATP synthase, central stalk" evidence=ISS

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|Q8SPH6 ATP5J "ATP synthase-coupling factor 6, mitochondrial" [Macaca fascicularis (taxid:9541)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 40/92 (43%), Positives = 56/92 (60%)

Query:    62 VRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSK-STGGKLVDPTPEIERELK 120
             +R  VS +  RN+  + VA     DP+Q+LF+DK+ EYKSK  T G  VD  PE ++EL+
Sbjct:    13 IRSAVSVHFRRNIGVTAVAFNKELDPVQKLFVDKIREYKSKRQTSGGPVDTGPEYQQELE 72

Query:   121 ADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIE 152
              +L K  + +G   K DM  FP F+F +PK E
Sbjct:    73 KELFKLKQMFG---KADMNTFPTFKFEDPKFE 101

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

UNIPROTKB|E2RL03 ATP5J "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 39/92 (42%), Positives = 58/92 (63%)

Query:    62 VRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSK-STGGKLVDPTPEIERELK 120
             +R  VS +L RN+  + VA     DP+Q+LF+DK+ EY++K  T G  VD  PE +++L+
Sbjct:    15 IRSAVSVHLRRNIGVTAVAFNKELDPVQKLFVDKIREYRTKRQTSGGPVDTGPEYQQDLE 74

Query:   121 ADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIE 152
              +L K  + YG   K DM  FP+F+F +PK E
Sbjct:    75 KELFKLKQMYG---KADMNTFPDFKFEDPKFE 103

GO:0016887 "ATPase activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

UNIPROTKB|Q5RBY3 ATP5J "ATP synthase-coupling factor 6, mitochondrial" [Pongo abelii (taxid:9601)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 42/95 (44%), Positives = 56/95 (58%)

Query:    59 FVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSK-STGGKLVDPTPEIER 117
             F  +R  VS  L RN+  + VA     DPIQ+LF+DK+ EYKSK  T G  VD  PE ++
Sbjct:     9 FSVIRSAVSVYLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGPVDAGPEYQQ 68

Query:   118 ELKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIE 152
             EL+ +L K  + +G     DM  FP F+F +PK E
Sbjct:    69 ELEKELFKLKQMFGN---ADMNTFPAFKFEDPKFE 100

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

UNIPROTKB|I3L6G6 LOC100622245 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 39/92 (42%), Positives = 56/92 (60%)

Query:    62 VRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSK-STGGKLVDPTPEIERELK 120
             ++  VS +L RN+  + VA     DP+Q+LF+DK+ EY++K  T G  VD  PE +++L 
Sbjct:    13 IQSAVSVSLRRNIGVTAVAFNKELDPVQKLFVDKIREYRTKRQTSGGPVDAGPEYQQDLD 72

Query:   121 ADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIE 152
              +L K  + YG   K DM  FPNF F +PK E
Sbjct:    73 RELFKLKQMYG---KADMNTFPNFTFEDPKFE 101

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

RGD|621376 Atp5j "ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6" [Rattus norvegicus (taxid:10116)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 41/93 (44%), Positives = 58/93 (62%)

Query:    62 VRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSK--STGGKLVDPTPEIEREL 119
             +R  VS +L RN+  + VA     DP+Q+LFLDK+ EYK+K  ++GG  VD  PE ++E+
Sbjct:    13 LRSAVSVHLRRNIGVTAVAFNKELDPVQKLFLDKIREYKAKRLASGGP-VDTGPEYQQEV 71

Query:   120 KADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIE 152
               +L K  + YG   K +M KFP F F +PK E
Sbjct:    72 DRELFKLKQMYG---KGEMDKFPTFNFEDPKFE 101

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISO;IDA

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IDA

GO:0016887 "ATPase activity" evidence=ISO

UNIPROTKB|P18859 ATP5J "ATP synthase-coupling factor 6, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 40/92 (43%), Positives = 56/92 (60%)

Query:    62 VRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSK-STGGKLVDPTPEIERELK 120
             +R  VS +L RN+  + VA     DPIQ+LF+DK+ EYKSK  T G  VD + E ++EL+
Sbjct:    13 IRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGPVDASSEYQQELE 72

Query:   121 ADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIE 152
              +L K  + +G     DM  FP F+F +PK E
Sbjct:    73 RELFKLKQMFGN---ADMNTFPTFKFEDPKFE 101

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0016887 "ATPase activity" evidence=IDA

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=IC;TAS

GO:0022857 "transmembrane transporter activity" evidence=IC

GO:0005215 "transporter activity" evidence=NAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|E1C4V1 ATP5J "ATP synthase-coupling factor 6, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 42/94 (44%), Positives = 58/94 (61%)

Query:    63 RKNVSQNLTRNLATSYVALKNAS--DPIQQLFLDKLSEY--KSKSTGGKLVDPTPEIERE 118
             R  VS +L RN+  S +A   A   DP+Q+LFLDK+ EY  KSK  GG  VD  PE +++
Sbjct:    14 RSAVSVHLRRNIGFSAIAFNKAKELDPVQKLFLDKIREYNTKSKQAGGP-VDVGPEFQKD 72

Query:   119 LKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIE 152
             +   L++  + YG +G  D+TKFP F+F EP  E
Sbjct:    73 MNESLARLQRMYG-EG--DLTKFPEFKFEEPNFE 103

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|P02721 ATP5J "ATP synthase-coupling factor 6, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 39/97 (40%), Positives = 57/97 (58%)

Query:    57 QLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSK-STGGKLVDPTPEI 115
             +L   V+  +S +  RN+  + VA     DP+Q+LF+DK+ EY++K  T G  VD  PE 
Sbjct:     8 RLSSAVQSAISVSWRRNIGITAVAFNKELDPVQKLFVDKIREYRTKRQTSGGPVDAGPEY 67

Query:   116 ERELKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIE 152
             +++L  +L K  + YG   K DM  FPNF F +PK E
Sbjct:    68 QQDLDRELFKLKQMYG---KADMNTFPNFTFEDPKFE 101

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0016887 "ATPase activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

FB|FBgn0035585 CG12027 [Drosophila melanogaster (taxid:7227)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 38/79 (48%), Positives = 47/79 (59%)

Query:    75 ATSYVALKNASDPIQQLFLDKLSEYKSKSTGGKLVDPTPEIERELKADLSKTAKQYGGDG 134
             + S  A     DPI Q+FLDK+ EY+ KS  GK VDP PE E ELK    + A QYGG  
Sbjct:    15 SVSNTASLRYKDPIYQIFLDKVREYRLKSPKGKPVDPGPEFEAELKEVTERLALQYGGGE 74

Query:   135 KEDMTKFPNFQFPEPKIEP 153
               DM +FP F+ P+  I+P
Sbjct:    75 GVDMLEFPKFKLPDIDIDP 93

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=NAS

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=NAS

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P02721	ATP5J_BOVIN	No assigned EC number	0.3942	0.6139	0.8981	yes	N/A
P18859	ATP5J_HUMAN	No assigned EC number	0.4134	0.6139	0.8981	yes	N/A
Q24407	ATP5J_DROME	No assigned EC number	0.6463	0.5189	0.7735	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	158
pfam05511	99	pfam05511, ATP-synt_F6, Mitochondrial ATP synthase	1e-33

>gnl|CDD|218620 pfam05511, ATP-synt_F6, Mitochondrial ATP synthase coupling factor 6

 Score =  113 bits (285), Expect = 1e-33
 Identities = 52/97 (53%), Positives = 63/97 (64%), Gaps = 2/97 (2%)

Query: 54  LTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEY--KSKSTGGKLVDP 111
           L  +    +R   S  L RN+  + VA     DPIQQLF+DK+ EY  KSKS+GGKLVD 
Sbjct: 3   LQRRASSVLRSACSVVLRRNIGVTAVAFNKELDPIQQLFVDKIREYKQKSKSSGGKLVDA 62

Query: 112 TPEIERELKADLSKTAKQYGGDGKEDMTKFPNFQFPE 148
            PE E+ELK +L K AKQYGG   +DMTKFP F+F E
Sbjct: 63  GPEYEKELKEELEKLAKQYGGGSGDDMTKFPKFKFEE 99

Coupling factor 6 (F6) is a component of mitochondrial ATP synthase which is required for the interactions of the catalytic and proton-translocating segments. Length = 99

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	158
PF05511	99	ATP-synt_F6: Mitochondrial ATP synthase coupling f	100.0
KOG4634|consensus	105		100.0
PF05511	99	ATP-synt_F6: Mitochondrial ATP synthase coupling f	99.78
KOG4634|consensus	105		99.58
PF10775	67	ATP_sub_h: ATP synthase complex subunit h; InterPr	85.08

>PF05511 ATP-synt_F6: Mitochondrial ATP synthase coupling factor 6; InterPro: IPR008387 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=100.00  E-value=1e-45  Score=277.04  Aligned_cols=96  Identities=56%  Similarity=0.855  Sum_probs=52.8

Q ss_pred             chhh-hhhhhhhhhhhhhhhhhhhhhHHHhhhcCChHHHHHHHHHHhh--hhcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy14777         53 MLTP-QLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEY--KSKSTGGKLVDPTPEIERELKADLSKTAKQ  129 (158)
Q Consensus        53 Mls~-~l~~~~r~a~~~~~rRnig~sA~a~~ka~DPIQkLFldKIREY--KsKs~gGklVDa~Pe~ekel~~el~kL~r~  129 (158)
                      |+++ ++.+.+|++++++++||||+||++++|++||||||||||||||  |+|++||+|||+||||+|||++||+||+++
T Consensus         1 m~~~~~~~~~~~~~~s~~~~Rni~~sa~~~~k~~DPIQklFldKIREY~~Ksks~gGklVD~~Pe~~kel~eel~kL~r~   80 (99)
T PF05511_consen    1 MALQRRLSSLLRSAVSVHLRRNIGTSAVAFNKALDPIQKLFLDKIREYNQKSKSSGGKLVDAGPEYEKELNEELEKLARQ   80 (99)
T ss_dssp             --------------------------------S--TTTHHHHHHHHHHHHHHTTTSS-STT--THHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhhhhHHHHhcccChHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4444 4557889999999999999999999999999999999999999  888899999999999999999999999999


Q ss_pred             hCCCCCCcCccCCCCcCCC
Q psy14777        130 YGGDGKEDMTKFPNFQFPE  148 (158)
Q Consensus       130 YGgg~~~DmtkFP~FkF~e  148 (158)
                      ||||+|+||++||+|||+|
T Consensus        81 YG~g~~~Dm~kFP~FkF~d   99 (99)
T PF05511_consen   81 YGGGSGVDMTKFPTFKFED   99 (99)
T ss_dssp             HHSS---TTTS-SS--SSS
T ss_pred             hCCcccccHHhCCCCCCCC
Confidence            9999999999999999997

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit F6 (or coupling factor 6) found in the F0 complex of F-ATPases in mitochondria. The F6 subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit F6 in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_V 2CLY_C 1VZS_A.

>KOG4634|consensus

Probab=100.00  E-value=7.3e-40  Score=246.94  Aligned_cols=100  Identities=43%  Similarity=0.729  Sum_probs=89.0

Q ss_pred             hhhhhhhhhhhhhhhhhhhhhhhHHHhhhcCChHHHHHHHHHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCC
Q psy14777         55 TPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSKSTGGKLVDPTPEIERELKADLSKTAKQYGGDG  134 (158)
Q Consensus        55 s~~l~~~~r~a~~~~~rRnig~sA~a~~ka~DPIQkLFldKIREYKsKs~gGklVDa~Pe~ekel~~el~kL~r~YGgg~  134 (158)
                      ++++++..++ ++..++|++|++|+|++|++|||||+|+||||||++||++|+|||++|||++||++||+||+.+|| +.
T Consensus         2 ~qrlfr~s~v-lrs~vs~~~gv~a~a~nk~~DpIqqlFldKvREy~~ks~~Gklvds~pe~e~eLk~el~rla~qfg-~~   79 (105)
T KOG4634|consen    2 LQRLFRFSSV-LRSAVSVHLGVTATAFNKELDPIQQLFLDKVREYKKKSPAGKLVDSDPEYEQELKEELFRLAQQFG-LA   79 (105)
T ss_pred             hHHHHHHHHH-HHHHHHHhhchhhhHHHhhhChHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhC-cc
Confidence            4666655444 444667788999999999999999999999999999999999999999999999999999999999 45


Q ss_pred             CCcCccCCCCcCCCCCcccccC
Q psy14777        135 KEDMTKFPNFQFPEPKIEPQVS  156 (158)
Q Consensus       135 ~~DmtkFP~FkF~epk~d~i~~  156 (158)
                      +.||.+||+||||+||+||+.+
T Consensus        80 ~~Dm~~fp~fkfed~kvdpV~~  101 (105)
T KOG4634|consen   80 NADMLTFPPFKFEDPKVDPVIE  101 (105)
T ss_pred             CchhhhCCCCCCCCCCcchHhh
Confidence            7899999999999999999643

>PF05511 ATP-synt_F6: Mitochondrial ATP synthase coupling factor 6; InterPro: IPR008387 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.78  E-value=2e-20  Score=140.68  Aligned_cols=59  Identities=46%  Similarity=0.591  Sum_probs=20.9

Q ss_pred             CchhH-HHHHHhhhhhhhhhhhhhhhHHHhhhccChHHHHHHHHHhhhhccccchhhhhh
Q psy14777          1 MMTPQ-LFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSKSAMLTPQLF   59 (158)
Q Consensus         1 m~~~~-l~~~~r~~~~~~~~rn~g~~~~~~~k~~dpiq~lf~dkirey~~ks~Mls~~l~   59 (158)
                      |++++ +.+.+|++++++++||||++|++++|+.||||||||||||||++||+.-.-.++
T Consensus         1 m~~~~~~~~~~~~~~s~~~~Rni~~sa~~~~k~~DPIQklFldKIREY~~Ksks~gGklV   60 (99)
T PF05511_consen    1 MALQRRLSSLLRSAVSVHLRRNIGTSAVAFNKALDPIQKLFLDKIREYNQKSKSSGGKLV   60 (99)
T ss_dssp             --------------------------------S--TTTHHHHHHHHHHHHHHTTTSS-ST
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhhhhHHHHhcccChHHHHHHHHHHHHHHHhccCCCCCC
Confidence            55555 446899999999999999999999999999999999999999888775444443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit F6 (or coupling factor 6) found in the F0 complex of F-ATPases in mitochondria. The F6 subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit F6 in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_V 2CLY_C 1VZS_A.

>KOG4634|consensus

Probab=99.58  E-value=1.2e-15  Score=115.85  Aligned_cols=50  Identities=42%  Similarity=0.557  Sum_probs=43.2

Q ss_pred             chhHHHHHHhhhhhhhhhhhhhhhHHHhhhccChHHHHHHHHHhhhhcccc
Q psy14777          2 MTPQLFVCVRKNVSQNLTRNLATSYVALKNASDPIQQLFLDKLSEYKSKSA   52 (158)
Q Consensus         2 ~~~~l~~~~r~~~~~~~~rn~g~~~~~~~k~~dpiq~lf~dkirey~~ks~   52 (158)
                      |+|++++.+++.++. +++|+|++|+++||+.|||||||+||||||++||.
T Consensus         1 ~~qrlfr~s~vlrs~-vs~~~gv~a~a~nk~~DpIqqlFldKvREy~~ks~   50 (105)
T KOG4634|consen    1 MLQRLFRFSSVLRSA-VSVHLGVTATAFNKELDPIQQLFLDKVREYKKKSP   50 (105)
T ss_pred             ChHHHHHHHHHHHHH-HHHhhchhhhHHHhhhChHHHHHHHHHHHHHhcCC
Confidence            578888876655554 66889999999999999999999999999999965

>PF10775 ATP_sub_h: ATP synthase complex subunit h; InterPro: IPR019711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=85.08  E-value=0.47  Score=33.87  Aligned_cols=27  Identities=33%  Similarity=0.551  Sum_probs=21.2

Q ss_pred             hhhhhhHHHhhhcCChHHHHHHHHHHhhhhc
Q psy14777         72 RNLATSYVALKNASDPIQQLFLDKLSEYKSK  102 (158)
Q Consensus        72 Rnig~sA~a~~ka~DPIQkLFldKIREYKsK  102 (158)
                      |+|++ ++ .  -.|.||-|+|.-||.||-.
T Consensus         1 R~Fst-~~-~--r~d~VQDLYLkELKayKp~   27 (67)
T PF10775_consen    1 RSFST-TP-R--RADLVQDLYLKELKAYKPP   27 (67)
T ss_pred             Ccccc-cc-c--cccHHHHHHHHHHHhcCCC
Confidence            67777 33 2  3699999999999999655

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit H found in the F0 complex of F-ATPases from fungal mitochondria. Subunit H is homologous to the mammalian factor F6, and is essential for the correct assembly and/or functioning of F-ATPases, since yeast cells lacking it are not able to grow on non-fermentable carbon sources. Subunit H occupies a central place in the peripheral stalk between the F1 sector and the membrane [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	158
4b2q_V	66	Model Of The Yeast F1fo-Atp Synthase Dimer Based On		3e-10
2cly_C	77	Subcomplex Of The Stator Of Bovine Mitochondrial At		3e-10
1vzs_A	76	Solution Structure Of Subunit F6 From The Periphera		4e-10
2wss_V	76	The Structure Of The Membrane Extrinsic Region Of B		3e-09

>pdb|4B2Q|V Chain V, Model Of The Yeast F1fo-Atp Synthase Dimer Based On Subtomogram Average Length = 66

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 86  DPIQQLFLDKLSEYKSK-STGGKLVDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNF 144
           DP+Q+LF+DK+ EY++K  T G  VD  PE +++L  +L K  + YG   K DM  FPNF
Sbjct: 2   DPVQKLFVDKIREYRTKRQTSGGPVDAGPEYQQDLDRELFKLKQMYG---KADMNTFPNF 58
Query: 145 QFPEPKIE 152
            F +PK E
Sbjct: 59  TFEDPKFE 66

>pdb|2CLY|C Chain C, Subcomplex Of The Stator Of Bovine Mitochondrial Atp Synthase Length = 77

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 86  DPIQQLFLDKLSEYKSK-STGGKLVDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNF 144
           DP+Q+LF+DK+ EY++K  T G  VD  PE +++L  +L K  + YG   K DM  FPNF
Sbjct: 6   DPVQKLFVDKIREYRTKRQTSGGPVDAGPEYQQDLDRELFKLKQMYG---KADMNTFPNF 62
Query: 145 QFPEPKIE 152
            F +PK E
Sbjct: 63  TFEDPKFE 70

>pdb|1VZS|A Chain A, Solution Structure Of Subunit F6 From The Peripheral Stalk Region Of Atp Synthase From Bovine Heart Mitochondria Length = 76

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 86  DPIQQLFLDKLSEYKSK-STGGKLVDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNF 144
           DP+Q+LF+DK+ EY++K  T G  VD  PE +++L  +L K  + YG   K DM  FPNF
Sbjct: 5   DPVQKLFVDKIREYRTKRQTSGGPVDAGPEYQQDLDRELFKLKQMYG---KADMNTFPNF 61
Query: 145 QFPEPKIE 152
            F +PK E
Sbjct: 62  TFEDPKFE 69

>pdb|2WSS|V Chain V, The Structure Of The Membrane Extrinsic Region Of Bovine Atp Synthase Length = 76

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 86  DPIQQLFLDKLSEYKSK-STGGKLVDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNF 144
           DP+Q+LF+DK+ EY++K  T G  VD  PE +++L  +L K  + Y   GK D   FPNF
Sbjct: 5   DPVQKLFVDKIREYRTKRQTSGGPVDAGPEYQQDLDRELFKLKQXY---GKADXNTFPNF 61
Query: 145 QFPEPKIE 152
            F +PK E
Sbjct: 62  TFEDPKFE 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	158
2cly_C	77	ATP synthase coupling factor 6, mitochondrial; mit	6e-26

>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V* Length = 77

 Score = 93.1 bits (231), Expect = 6e-26
 Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 4/74 (5%)

Query: 81  LKNASDPIQQLFLDKLSEYKSKS-TGGKLVDPTPEIERELKADLSKTAKQYGGDGKEDMT 139
                DP+Q+LF+DK+ EY++K  T G  VD  PE +++L  +L K  + YG     DM 
Sbjct: 1   FNKELDPVQKLFVDKIREYRTKRQTSGGPVDAGPEYQQDLDRELFKLKQMYGK---ADMN 57

Query: 140 KFPNFQFPEPKIEP 153
            FPNF F +PK E 
Sbjct: 58  TFPNFTFEDPKFEV 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	158
2cly_C	77	ATP synthase coupling factor 6, mitochondrial; mit	100.0
2cly_C	77	ATP synthase coupling factor 6, mitochondrial; mit	99.23

>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V*

Probab=100.00  E-value=7.1e-40  Score=235.55  Aligned_cols=74  Identities=41%  Similarity=0.751  Sum_probs=63.3

Q ss_pred             hhhcCChHHHHHHHHHHhhhhcCC-CCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcCccCCCCcCCCCCcccccCC
Q psy14777         81 LKNASDPIQQLFLDKLSEYKSKST-GGKLVDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIEPQVSR  157 (158)
Q Consensus        81 ~~ka~DPIQkLFldKIREYKsKs~-gGklVDa~Pe~ekel~~el~kL~r~YGgg~~~DmtkFP~FkF~epk~d~i~~~  157 (158)
                      |||++||||||||||||||++||+ +|+|||+||||++||++||+||+++||||   ||++||+|||+||+|||++.+
T Consensus         1 ~~k~~DPIQqLFldKIREYk~Ks~~~G~lVD~~Pe~~kel~~el~kL~~~YGgg---Dm~kFP~FkF~~pk~d~~~~~   75 (77)
T 2cly_C            1 FNKELDPVQKLFVDKIREYRTKRQTSGGPVDAGPEYQQDLDRELFKLKQMYGKA---DMNTFPNFTFEDPKFEVVEKP   75 (77)
T ss_dssp             ----CCGGGHHHHHHHHHHHHHHTCCSSSSSCCTHHHHHHHHHHHHHHHHHCSS---CTTSCCCCCCCCCCCC-----
T ss_pred             CCcccchHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHHHHHHHHHCcc---hHhhCCCCCCCCCCcccCCCC
Confidence            478999999999999999999976 78899999999999999999999999998   999999999999999999865

>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V*

Probab=99.23  E-value=1.6e-12  Score=93.39  Aligned_cols=24  Identities=42%  Similarity=0.872  Sum_probs=19.5

Q ss_pred             hhhccChHHHHHHHHHhhhhcccc
Q psy14777         29 LKNASDPIQQLFLDKLSEYKSKSA   52 (158)
Q Consensus        29 ~~k~~dpiq~lf~dkirey~~ks~   52 (158)
                      |||+.||||||||||||||++||+
T Consensus         1 ~~k~~DPIQqLFldKIREYk~Ks~   24 (77)
T 2cly_C            1 FNKELDPVQKLFVDKIREYRTKRQ   24 (77)
T ss_dssp             ----CCGGGHHHHHHHHHHHHHHT
T ss_pred             CCcccchHHHHHHHHHHHHHHhcc
Confidence            689999999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	158
d2clyc1	66	f.45.1.1 (C:5-70) ATPase subunit F6 {Cow (Bos taur	3e-28

>d2clyc1 f.45.1.1 (C:5-70) ATPase subunit F6 {Cow (Bos taurus) [TaxId: 9913]} Length = 66

class: Membrane and cell surface proteins and peptides
fold: Mitochondrial ATP synthase coupling factor 6
superfamily: Mitochondrial ATP synthase coupling factor 6
family: Mitochondrial ATP synthase coupling factor 6
domain: ATPase subunit F6
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 97.4 bits (243), Expect = 3e-28
 Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 4/68 (5%)

Query: 86  DPIQQLFLDKLSEYKSKS-TGGKLVDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNF 144
           DP+Q+LF+DK+ EY++K  T G  VD  PE +++L  +L K  + YG     DM  FPNF
Sbjct: 2   DPVQKLFVDKIREYRTKRQTSGGPVDAGPEYQQDLDRELFKLKQMYGK---ADMNTFPNF 58

Query: 145 QFPEPKIE 152
            F +PK E
Sbjct: 59  TFEDPKFE 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	158
d2clyc1	66	ATPase subunit F6 {Cow (Bos taurus) [TaxId: 9913]}	100.0
d2clyc1	66	ATPase subunit F6 {Cow (Bos taurus) [TaxId: 9913]}	98.92

>d2clyc1 f.45.1.1 (C:5-70) ATPase subunit F6 {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Mitochondrial ATP synthase coupling factor 6
superfamily: Mitochondrial ATP synthase coupling factor 6
family: Mitochondrial ATP synthase coupling factor 6
domain: ATPase subunit F6
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7e-37  Score=213.03  Aligned_cols=65  Identities=48%  Similarity=0.880  Sum_probs=60.3

Q ss_pred             CChHHHHHHHHHHhhhhcC-CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcCccCCCCcCCCCCcc
Q psy14777         85 SDPIQQLFLDKLSEYKSKS-TGGKLVDPTPEIERELKADLSKTAKQYGGDGKEDMTKFPNFQFPEPKIE  152 (158)
Q Consensus        85 ~DPIQkLFldKIREYKsKs-~gGklVDa~Pe~ekel~~el~kL~r~YGgg~~~DmtkFP~FkF~epk~d  152 (158)
                      +||||||||||||||++|| ++|++||+||||++||++|++||+++||||   ||++||+|+|+||++|
T Consensus         1 lDPIQkLFldKiREY~~Ks~~~Gg~vD~~Pe~~kel~~el~kl~~~YG~g---dm~~FP~FkF~epk~d   66 (66)
T d2clyc1           1 LDPVQKLFVDKIREYRTKRQTSGGPVDAGPEYQQDLDRELFKLKQMYGKA---DMNTFPNFTFEDPKFE   66 (66)
T ss_dssp             CCGGGHHHHHHHHHHHHHHTCCSSSSSCCTHHHHHHHHHHHHHHHHHCSS---CTTSCCCCCCCCCCCC
T ss_pred             CchHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHHHHHHHHHCCC---chhhCcCCCCCCCCCC
Confidence            6999999999999997774 445599999999999999999999999987   9999999999999986

>d2clyc1 f.45.1.1 (C:5-70) ATPase subunit F6 {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Mitochondrial ATP synthase coupling factor 6
superfamily: Mitochondrial ATP synthase coupling factor 6
family: Mitochondrial ATP synthase coupling factor 6
domain: ATPase subunit F6
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.92  E-value=9.9e-11  Score=80.43  Aligned_cols=20  Identities=50%  Similarity=0.986  Sum_probs=18.7

Q ss_pred             cChHHHHHHHHHhhhhcccc
Q psy14777         33 SDPIQQLFLDKLSEYKSKSA   52 (158)
Q Consensus        33 ~dpiq~lf~dkirey~~ks~   52 (158)
                      .||||||||||||||++||+
T Consensus         1 lDPIQkLFldKiREY~~Ks~   20 (66)
T d2clyc1           1 LDPVQKLFVDKIREYRTKRQ   20 (66)
T ss_dssp             CCGGGHHHHHHHHHHHHHHT
T ss_pred             CchHHHHHHHHHHHHHHhcc
Confidence            59999999999999999986