Psyllid ID: psy14778

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYELIGVTVHTGTADGGHYYSFIRDRDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQYIDATPPTSSRLVQYFTVLNYFSMTRNEKLMLLPTSWYPSYRILIFVKAIGLHEALPLLTRKPLWCPKLNGYST
Secondary Structure (PSIPRED)
ccEEEEccccccEEcccEEEcccEEcccccccccccccHHHHHHHHHHHcccccccccccccccccEEEEEEEEEEEEcccccccEEEEEEccccEEEEEcccEEEccHHHHHHHccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEcccccEEEEcccccccccccccHHHHHcccccccccccccccccccccccccccccccccEEEEEEEEEEEcccccccEEEEEEEccccEEEEcccccccccHHHHHHHcccccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccEHHHcccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MRYTFNMVTMLKEKVnthfsfpmrldmsgyvekhlmpqhyqeeklkseargegevggeggedfnenyEYELIGVTVhtgtadgghyysfirdrdkwllfndaevkhfdssqlaaECFGGEMTVLNACLKLLstapqyidatpptssrlVQYFTVLNYFSMTRNEKLmllptswypsyRILIFVKAIGlhealplltrkplwcpklngyst
Flexible Loop (DISEMBL)
MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYELIGVTVHTGTADGGHYYSFIRDRDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQYIdatpptssrlVQYFTVLNYFSMTRNEKLMLLPTSWYPSYRILIFVKAIGLHEAlplltrkplwcpklngyst
Low Complexity Region (SEG)
MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARgegevggeggedfnenyeyeLIGVTVHTGTADGGHYYSFIRDRDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQYIDATPPTSSRLVQYFTVLNYFSMTRNEKLMLLPTSWYPSYRILIFVKAIGLHEALPLLTRKPLWCPKLNGYST
Disordered region (IsUnstruct)
***TFNMVTMLKEKVNTHFSFPMRLDMSGYVE******************************FNENYEYELIGVTVHTGTADGGHYYSFIRDRDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQYIDATPPTSSRLVQYFTVLNYFSMTRNEKLMLLPTSWYPSYRILIFVKAIGLHEALPLLTRKPLWCPKL*****
Disordered Region (DISOPRED)
MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVE**********************************YEYELIGVTVHTGTADGGHYYSFIRDRDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQ*IDATPPTSSRLVQYFTVLNYFSMTR****MLLPTSWYPSYRILIFVKAIGLHEALPLLTRKPLWCPKLNGY**
Disordered Region (DISEMBL)
MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEK*************EGGEDFNENYEYELIGVTVHTGTADGGHYYSFIRDRDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQYIDATPPTSSRLVQYFTVLNYFSMTRNEKLMLLPTSWYPSYRILIFVKAIGLHEALPLLTRKPLWCPKLNGYST
Disordered Region (DISPRO)
*RYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHL*****************************ENYEYELIGVTVHTGTADGGHYYSFIRDRDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQYIDATPPTSSRLVQYFTVLNYFSMTRNEKLMLLPTSWYPSYRILIFVKAIGLHEALPLLTRKPLWCPKLNG***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYELIGVTVHTGTADGGHYYSFIRDRDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQYIDATPPTSSRLVQYFTVLNYFSMTRNEKLMLLPTSWYPSYRILIFVKAIGLHEALPLLTRKPLWCPKLNGYST
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
Q6ZQ93	3582	Ubiquitin carboxyl-termin	yes	N/A	0.542	0.031	0.633	2e-39
Q70CQ2	3546	Ubiquitin carboxyl-termin	yes	N/A	0.542	0.032	0.633	3e-39
B1AY13	2617	Ubiquitin carboxyl-termin	no	N/A	0.571	0.045	0.354	8e-13
Q9UPU5	2620	Ubiquitin carboxyl-termin	no	N/A	0.571	0.045	0.354	8e-13
P55824	2778	Probable ubiquitin carbox	no	N/A	0.5	0.037	0.358	3e-12
O00507	2555	Probable ubiquitin carbox	no	N/A	0.538	0.044	0.325	2e-10
Q93008	2570	Probable ubiquitin carbox	no	N/A	0.528	0.043	0.298	2e-10
P70398	2559	Probable ubiquitin carbox	no	N/A	0.528	0.043	0.298	8e-10
P50101	1230	Ubiquitin carboxyl-termin	yes	N/A	0.461	0.078	0.322	1e-07
Q8BY87	1376	Ubiquitin carboxyl-termin	no	N/A	0.504	0.077	0.294	2e-07

>sp|Q6ZQ93|UBP34_MOUSE Ubiquitin carboxyl-terminal hydrolase 34 OS=Mus musculus GN=Usp34 PE=1 SV=3

 Score =  162 bits (410), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 83/131 (63%), Positives = 96/131 (73%), Gaps = 17/131 (12%)

Query: 1    MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGG 60
            MRYTFNMVTM+KEKVNTHFSFP+RLDM+ Y E  LM +  ++E  K       +VG    
Sbjct: 2126 MRYTFNMVTMMKEKVNTHFSFPLRLDMTPYTEDFLMGKSDRKEGFK-------DVGDRSK 2178

Query: 61   EDFNENYEYELIGVTVHTGTADGGHYYSFIRD--------RDKWLLFNDAEVKHFDSSQL 112
            +   E+YEY+LIGVTVHTGTADGGHYYSFIRD         +KW LFNDAEVK FDS+QL
Sbjct: 2179 D--TESYEYDLIGVTVHTGTADGGHYYSFIRDIVNPHAYKNNKWYLFNDAEVKPFDSAQL 2236

Query: 113  AAECFGGEMTV 123
            A+ECFGGEMT 
Sbjct: 2237 ASECFGGEMTT 2247

Ubiquitin hydrolase that can remove conjugated ubiquitin from AXIN1 and AXIN2, thereby acting as a regulator of Wnt signaling pathway. Acts as an activator of the Wnt signaling pathway downstream of the beta-catenin destruction complex by deubiquitinating and stabilizing AXIN1 and AXIN2, leading to promote nuclear accumulation of AXIN1 and AXIN2 and positively regulate beta-catenin (CTNBB1)-mediated transcription. Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|Q70CQ2|UBP34_HUMAN Ubiquitin carboxyl-terminal hydrolase 34 OS=Homo sapiens GN=USP34 PE=1 SV=2

 Score =  161 bits (408), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 83/131 (63%), Positives = 96/131 (73%), Gaps = 17/131 (12%)

Query: 1    MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGG 60
            MRYTFNMVTM+KEKVNTHFSFP+RLDM+ Y E  LM +  ++E  K       EV     
Sbjct: 2089 MRYTFNMVTMMKEKVNTHFSFPLRLDMTPYTEDFLMGKSERKEGFK-------EVSDHSK 2141

Query: 61   EDFNENYEYELIGVTVHTGTADGGHYYSFIRD--------RDKWLLFNDAEVKHFDSSQL 112
            +  +E+YEY+LIGVTVHTGTADGGHYYSFIRD         +KW LFNDAEVK FDS+QL
Sbjct: 2142 D--SESYEYDLIGVTVHTGTADGGHYYSFIRDIVNPHAYKNNKWYLFNDAEVKPFDSAQL 2199

Query: 113  AAECFGGEMTV 123
            A+ECFGGEMT 
Sbjct: 2200 ASECFGGEMTT 2210

Ubiquitin hydrolase that can remove conjugated ubiquitin from AXIN1 and AXIN2, thereby acting as a regulator of Wnt signaling pathway. Acts as an activator of the Wnt signaling pathway downstream of the beta-catenin destruction complex by deubiquitinating and stabilizing AXIN1 and AXIN2, leading to promote nuclear accumulation of AXIN1 and AXIN2 and positively regulate beta-catenin (CTNBB1)-mediated transcription. Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|B1AY13|UBP24_MOUSE Ubiquitin carboxyl-terminal hydrolase 24 OS=Mus musculus GN=Usp24 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 60/127 (47%), Gaps = 7/127 (5%)

Query: 1    MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGG 60
            MR+ F+  +    K +    FP  L+M  Y    +  Q    E  ++    +   GG   
Sbjct: 1883 MRFGFDWESGRSIKYDEQIRFPWMLNMEPYTVAGMARQDSSSEVGENGRNMDQGGGGSPR 1942

Query: 61   EDFNENYEYELIGVTVHTGTADGGHYYSFIRDRD-----KWLLFNDAEVKHFD--SSQLA 113
            +       YEL+GV VH+G A  GHYYSFI+DR      KW  FND  ++ FD     L 
Sbjct: 1943 KKVALTENYELVGVIVHSGQAHAGHYYSFIKDRRGCGKGKWYKFNDTVIEEFDLNDETLE 2002

Query: 114  AECFGGE 120
             ECFGGE
Sbjct: 2003 YECFGGE 2009

Involved in the ubiquitin-dependent proteolytic pathway in conjunction with the 26S proteasome.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q9UPU5|UBP24_HUMAN Ubiquitin carboxyl-terminal hydrolase 24 OS=Homo sapiens GN=USP24 PE=1 SV=3

 Score = 73.6 bits (179), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 60/127 (47%), Gaps = 7/127 (5%)

Query: 1    MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGG 60
            MR+ F+  +    K +    FP  L+M  Y    +  Q    E  ++    +   GG   
Sbjct: 1886 MRFGFDWESGRSIKYDEQIRFPWMLNMEPYTVSGMARQDSSSEVGENGRSVDQGGGGSPR 1945

Query: 61   EDFNENYEYELIGVTVHTGTADGGHYYSFIRDRD-----KWLLFNDAEVKHFD--SSQLA 113
            +       YEL+GV VH+G A  GHYYSFI+DR      KW  FND  ++ FD     L 
Sbjct: 1946 KKVALTENYELVGVIVHSGQAHAGHYYSFIKDRRGCGKGKWYKFNDTVIEEFDLNDETLE 2005

Query: 114  AECFGGE 120
             ECFGGE
Sbjct: 2006 YECFGGE 2012

Involved in the ubiquitin-dependent proteolytic pathway in conjunction with the 26S proteasome.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|P55824|FAF_DROME Probable ubiquitin carboxyl-terminal hydrolase FAF OS=Drosophila melanogaster GN=faf PE=1 SV=2

 Score = 72.0 bits (175), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 26/131 (19%)

Query: 2    RYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGE 61
            R+ ++   +   K N +F FP  LDM  Y    L             A+ EGEV  E G+
Sbjct: 1914 RFEYDYERVCAIKFNDYFEFPRILDMEPYTVSGL-------------AKLEGEVV-EVGD 1959

Query: 62   DFNENYE---YELIGVTVHTGTADGGHYYSFIRDRD------KWLLFNDAEV---KHFDS 109
            +   N E   YEL G+ VH+G A GGHY+S+I  ++      +W  F+D EV   K  + 
Sbjct: 1960 NCQTNVETTKYELTGIVVHSGQASGGHYFSYILSKNPANGKCQWYKFDDGEVTECKMHED 2019

Query: 110  SQLAAECFGGE 120
             ++ AECFGGE
Sbjct: 2020 EEMKAECFGGE 2030

Required for eye and embryo development, and plays a role in compound eye assembly and oogenesis respectively. In the larval eye disks, cells outside the assembling facets require this protein for short-range cell interactions that prevent the mystery cells from becoming photoreceptors. It is also required for nuclear migration and cellularization in early embryogenesis and could play a role in pole cell determination, development or function.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|O00507|USP9Y_HUMAN Probable ubiquitin carboxyl-terminal hydrolase FAF-Y OS=Homo sapiens GN=USP9Y PE=1 SV=2

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 61/132 (46%), Gaps = 19/132 (14%)

Query: 2    RYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEK---HLMPQHYQEEKLKSEARGEGEVGGE 58
            R+ ++       K N +F FP  LDM  Y      +L   +   E    E + + +    
Sbjct: 1801 RFDYDWERECAIKFNDYFEFPRELDMGPYTVAGVANLERDNVNSENELIEQKEQSDNETA 1860

Query: 59   GGEDFNENYEYELIGVTVHTGTADGGHYYSFIRDR-------DKWLLFNDAEV---KHFD 108
            GG       +Y L+GV VH+G A GGHYYS+I  R       D W  F+D +V   K  D
Sbjct: 1861 GGT------KYRLVGVLVHSGQASGGHYYSYIIQRNGKDDQTDHWYKFDDGDVTECKMDD 1914

Query: 109  SSQLAAECFGGE 120
              ++  +CFGGE
Sbjct: 1915 DEEMKNQCFGGE 1926

May function as a ubiquitin-protein or polyubiquitin hydrolase involved both in the processing of ubiquitin precursors and of ubiquitinated proteins. May therefore play an important role regulatory role at the level of protein turnover by preventing degradation of proteins through the removal of conjugated ubiquitin. Essential component of TGF-beta/BMP signaling cascade. Deubiquitinates monoubiquitinated SMAD4, opposing the activity of E3 ubiquitin-protein ligase TRIM33. Monoubiquitination of SMAD4 hampers its ability to form a stable complex with activated SMAD2/3 resulting in inhibition of TGF-beta/BMP signaling cascade. Deubiqitination of SMAD4 by USP9X re-empowers its competence to mediate TGF-beta signaling.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q93008|USP9X_HUMAN Probable ubiquitin carboxyl-terminal hydrolase FAF-X OS=Homo sapiens GN=USP9X PE=1 SV=3

 Score = 65.5 bits (158), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 23/134 (17%)

Query: 2    RYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMP-----QHYQEEKLKSEARGEGEVG 56
            R+ ++       K N +F FP  LDM  Y    +        + + + ++   + E E  
Sbjct: 1799 RFDYDWERECAIKFNDYFEFPRELDMEPYTVAGVAKLEGDNVNPESQLIQQSEQSESETA 1858

Query: 57   GEGGEDFNENYEYELIGVTVHTGTADGGHYYSFI-------RDRDKWLLFNDAEV---KH 106
            G        + +Y L+GV VH+G A GGHYYS+I        +R++W  F+D +V   K 
Sbjct: 1859 G--------STKYRLVGVLVHSGQASGGHYYSYIIQRNGGDGERNRWYKFDDGDVTECKM 1910

Query: 107  FDSSQLAAECFGGE 120
             D  ++  +CFGGE
Sbjct: 1911 DDDEEMKNQCFGGE 1924

Deubiquitinase involved both in the processing of ubiquitin precursors and of ubiquitinated proteins. May therefore play an important role regulatory role at the level of protein turnover by preventing degradation of proteins through the removal of conjugated ubiquitin. Essential component of TGF-beta/BMP signaling cascade. Regulates chromosome alignment and segregation in mitosis by regulating the localization of BIRC5/survivin to mitotic centromeres. Specifically hydrolyzes both 'Lys-29'- and 'Lys-33'-linked polyubiquitins chains. Specifically deubiquitinates monoubiquitinated SMAD4, opposing the activity of E3 ubiquitin-protein ligase TRIM33.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|P70398|USP9X_MOUSE Probable ubiquitin carboxyl-terminal hydrolase FAF-X OS=Mus musculus GN=Usp9x PE=1 SV=2

 Score = 63.9 bits (154), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 23/134 (17%)

Query: 2    RYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMP-----QHYQEEKLKSEARGEGEVG 56
            R+ ++       K N +F FP  LDM  Y    +        + + + ++   + E E  
Sbjct: 1799 RFDYDWERECAIKFNDYFEFPRELDMEPYTVAGVAKLEGDNVNPESQLIQQNEQSESEKA 1858

Query: 57   GEGGEDFNENYEYELIGVTVHTGTADGGHYYSFIRDR-------DKWLLFNDAEV---KH 106
            G        + +Y L+GV VH+G A GGHYYS+I  R       ++W  F+D +V   K 
Sbjct: 1859 G--------STKYRLVGVLVHSGQASGGHYYSYIIQRNGGDGEKNRWYKFDDGDVTECKM 1910

Query: 107  FDSSQLAAECFGGE 120
             D  ++  +CFGGE
Sbjct: 1911 DDDEEMKNQCFGGE 1924

Deubiquitinase involved both in the processing of ubiquitin precursors and of ubiquitinated proteins. May therefore play an important role regulatory role at the level of protein turnover by preventing degradation of proteins through the removal of conjugated ubiquitin. Essential component of TGF-beta/BMP signaling cascade. Regulates chromosome alignment and segregation in mitosis by regulating the localization of BIRC5/survivin to mitotic centromeres. Specifically hydrolyzes both 'Lys-29'- and 'Lys-33'-linked polyubiquitins chains. Specifically deubiquitinates monoubiquitinated SMAD4, opposing the activity of E3 ubiquitin-protein ligase TRIM33.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|P50101|UBP15_YEAST Ubiquitin carboxyl-terminal hydrolase 15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBP15 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 21/118 (17%)

Query: 3   YTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGED 62
           Y FN   M+K  VN  + FP  +D+S +V+K ++     ++ L SE + +          
Sbjct: 402 YDFNYDQMVK--VNDKYEFPETIDLSPFVDKDVL-----KKTLDSENKDKNP-------- 446

Query: 63  FNENYEYELIGVTVHTGTADGGHYYSFIRD--RDKWLLFNDAEVKHFDSSQLAAECFG 118
               Y Y L GV VH+G    GHYY+ I+    D+W  F+D  V      Q+  E FG
Sbjct: 447 ----YVYNLHGVLVHSGDISTGHYYTLIKPGVEDQWYRFDDERVWRVTKKQVFQENFG 500

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q8BY87|UBP47_MOUSE Ubiquitin carboxyl-terminal hydrolase 47 OS=Mus musculus GN=Usp47 PE=1 SV=2

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 55/136 (40%), Gaps = 30/136 (22%)

Query: 2   RYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEV-GGEGG 60
           R+ F+  TM + K+N   SFP  LDMS +++         E    S A  EG     +  
Sbjct: 392 RFDFDYTTMHRIKLNDRMSFPEELDMSTFIDIEDEKSPQTESCTDSGAENEGSCHSDQMS 451

Query: 61  EDFNENYE---------------------------YELIGVTVHTGTADGGHYYSFIR-- 91
            DF+ +                             YEL  V VH+G+A GGHYY+ I+  
Sbjct: 452 NDFSTDDAVDEGICLESSSGSEKISKPGLEKNSLMYELFSVMVHSGSAAGGHYYACIKSF 511

Query: 92  DRDKWLLFNDAEVKHF 107
             D+W  FND  V   
Sbjct: 512 SDDQWYSFNDQHVSRI 527

Ubiquitin-specific protease that specifically deubiquitinates monoubiquitinated DNA polymerase beta (POLB), stabilizing POLB thereby playing a role in base-excision repair (BER) (By similarity). Acts as a regulator of cell growth and genome integrity. May also indirectly regulates CDC25A expression at a transcriptional level.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
357622215	3309	putative ubiquitin specific protease 34	0.576	0.036	0.803	1e-50
242010291	3535	ubiquitin specific protease, putative [P	0.576	0.034	0.748	2e-49
157131054	3561	ubiquitin specific protease [Aedes aegyp	0.580	0.034	0.671	3e-48
340713885	3425	PREDICTED: ubiquitin carboxyl-terminal h	0.580	0.035	0.746	3e-47
350418847	3425	PREDICTED: ubiquitin carboxyl-terminal h	0.580	0.035	0.746	4e-47
328716538	1440	PREDICTED: ubiquitin carboxyl-terminal h	0.542	0.079	0.721	9e-47
332027970	3445	Ubiquitin carboxyl-terminal hydrolase 34	0.580	0.035	0.701	2e-46
380025402	2944	PREDICTED: LOW QUALITY PROTEIN: ubiquiti	0.576	0.041	0.712	4e-46
270010424	3281	hypothetical protein TcasGA2_TC009817 [T	0.523	0.033	0.716	3e-45
307187156	3468	Ubiquitin carboxyl-terminal hydrolase 34	0.580	0.035	0.678	4e-45

>gi|357622215|gb|EHJ73779.1| putative ubiquitin specific protease 34 [Danaus plexippus]

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 102/127 (80%), Positives = 107/127 (84%), Gaps = 6/127 (4%)

Query: 1    MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKS-EARGEGEVGGEG 59
            MRYTFNM+TMLKEKVNTHFSFPMRLDMSGYVEKHLMP  YQEEK KS E R EGEV  E 
Sbjct: 1963 MRYTFNMLTMLKEKVNTHFSFPMRLDMSGYVEKHLMPAQYQEEKRKSAEQRKEGEVNEED 2022

Query: 60   GEDFNENYEYELIGVTVHTGTADGGHYYSFIRDR----DKWLLFNDAEVKHFDSSQLAAE 115
              D  E+YEYELIGVTVHTGTADGGHYYSFIRDR    D+WLLFNDAEVK FD + +AAE
Sbjct: 2023 S-DGEEHYEYELIGVTVHTGTADGGHYYSFIRDREHDHDRWLLFNDAEVKPFDPAHIAAE 2081

Query: 116  CFGGEMT 122
            CFGGEMT
Sbjct: 2082 CFGGEMT 2088

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010291|ref|XP_002425902.1| ubiquitin specific protease, putative [Pediculus humanus corporis] gi|212509878|gb|EEB13164.1| ubiquitin specific protease, putative [Pediculus humanus corporis]

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/127 (74%), Positives = 108/127 (85%), Gaps = 6/127 (4%)

Query: 1    MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGG 60
            MRYTFNM+TMLKEKVNT FSFP+RLDMSGYVEKHLMPQ+YQE+++KS+   + +   +  
Sbjct: 2154 MRYTFNMITMLKEKVNTLFSFPLRLDMSGYVEKHLMPQYYQEQRMKSQLSSKSDELSD-T 2212

Query: 61   EDFNENYEYELIGVTVHTGTADGGHYYSFIRD-----RDKWLLFNDAEVKHFDSSQLAAE 115
            +DFNE YEY+LIGVTVHTGTADGGHYYSFIRD     RDKW LFNDAEVK FD +QLAAE
Sbjct: 2213 DDFNERYEYDLIGVTVHTGTADGGHYYSFIRDRTALNRDKWFLFNDAEVKPFDPNQLAAE 2272

Query: 116  CFGGEMT 122
            CFGGEMT
Sbjct: 2273 CFGGEMT 2279

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157131054|ref|XP_001655797.1| ubiquitin specific protease [Aedes aegypti] gi|108871674|gb|EAT35899.1| AAEL011975-PA, partial [Aedes aegypti]

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 98/146 (67%), Positives = 106/146 (72%), Gaps = 24/146 (16%)

Query: 1    MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGG--- 57
            MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEK LMPQHYQEEK KSE R          
Sbjct: 2188 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKTLMPQHYQEEKRKSELRRSASRNAAEK 2247

Query: 58   ------------EGGEDFNENYEYELIGVTVHTGTADGGHYYSFIRDR---------DKW 96
                        E  EDFNE+YEY+L+GVTVHTG ADGGHYYSFI++R         ++W
Sbjct: 2248 AEIQKQQQTLDEEDSEDFNEHYEYDLVGVTVHTGNADGGHYYSFIKERNEDSNPNHQERW 2307

Query: 97   LLFNDAEVKHFDSSQLAAECFGGEMT 122
             LFNDAEVK FD SQ+AAECFGGEMT
Sbjct: 2308 FLFNDAEVKLFDPSQIAAECFGGEMT 2333

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713885|ref|XP_003395465.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 34-like [Bombus terrestris]

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 97/130 (74%), Positives = 104/130 (80%), Gaps = 8/130 (6%)

Query: 1    MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEAR-GEGEVGGEG 59
            MRYTFNM TMLKEKVNTHFSFP+RLDMSGYVEK LMPQHYQEEK  SE R  E +   E 
Sbjct: 2043 MRYTFNMGTMLKEKVNTHFSFPLRLDMSGYVEKKLMPQHYQEEKKASEKRKSESDCQSEL 2102

Query: 60   GEDFN--ENYEYELIGVTVHTGTADGGHYYSFIRDR-----DKWLLFNDAEVKHFDSSQL 112
              D    E+Y+Y+LIGVTVHTGTADGGHYYSFIRDR     DKW LFNDAEVK FD +Q+
Sbjct: 2103 DNDDAEMEHYQYDLIGVTVHTGTADGGHYYSFIRDRTSPNKDKWFLFNDAEVKPFDPNQI 2162

Query: 113  AAECFGGEMT 122
            AAECFGGEMT
Sbjct: 2163 AAECFGGEMT 2172

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350418847|ref|XP_003491987.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 34-like [Bombus impatiens]

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 97/130 (74%), Positives = 104/130 (80%), Gaps = 8/130 (6%)

Query: 1    MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEAR-GEGEVGGEG 59
            MRYTFNM TMLKEKVNTHFSFP+RLDMSGYVEK LMPQHYQEEK  SE R  E +   E 
Sbjct: 2043 MRYTFNMGTMLKEKVNTHFSFPLRLDMSGYVEKKLMPQHYQEEKKASEKRKSESDCQSEL 2102

Query: 60   GEDFN--ENYEYELIGVTVHTGTADGGHYYSFIRDR-----DKWLLFNDAEVKHFDSSQL 112
              D    E+Y+Y+LIGVTVHTGTADGGHYYSFIRDR     DKW LFNDAEVK FD +Q+
Sbjct: 2103 DNDDAEMEHYQYDLIGVTVHTGTADGGHYYSFIRDRTSPNKDKWFLFNDAEVKPFDPNQI 2162

Query: 113  AAECFGGEMT 122
            AAECFGGEMT
Sbjct: 2163 AAECFGGEMT 2172

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328716538|ref|XP_003245975.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 34-like [Acyrthosiphon pisum]

 Score =  192 bits (487), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 96/133 (72%), Positives = 103/133 (77%), Gaps = 19/133 (14%)

Query: 1   MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGG 60
           MRYTFNMVTM+KEKVNTHFSFPM LDMSGYVEKHLMPQHY EEK  +E         +G 
Sbjct: 124 MRYTFNMVTMMKEKVNTHFSFPMILDMSGYVEKHLMPQHYLEEKEMNE--------NKGT 175

Query: 61  EDFNENYEYELIGVTVHTGTADGGHYYSFIRDR-----------DKWLLFNDAEVKHFDS 109
           E   ENY+YELIGVTVHTGTADGGHYYSFIR+R           D+W LFNDAEVK FD+
Sbjct: 176 ERLEENYQYELIGVTVHTGTADGGHYYSFIRNRERTNKSQTPSTDQWYLFNDAEVKLFDA 235

Query: 110 SQLAAECFGGEMT 122
           SQLAAECFGGEMT
Sbjct: 236 SQLAAECFGGEMT 248

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027970|gb|EGI68021.1| Ubiquitin carboxyl-terminal hydrolase 34 [Acromyrmex echinatior]

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 94/134 (70%), Positives = 105/134 (78%), Gaps = 12/134 (8%)

Query: 1    MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGG--- 57
            MRYTFNM TMLKEKVNTHFSFP+RLDMSGYVEK LMPQHYQ+EK  +  + + E  G   
Sbjct: 2049 MRYTFNMGTMLKEKVNTHFSFPLRLDMSGYVEKKLMPQHYQDEKKAASEKRKSENDGHSK 2108

Query: 58   ----EGGEDFNENYEYELIGVTVHTGTADGGHYYSFIRDR-----DKWLLFNDAEVKHFD 108
                E  E+  E+Y+Y+LIGVTVHTGTADGGHYYSFIRDR     DKW LFNDAEVK FD
Sbjct: 2109 SDDAEKEEEDVEHYQYDLIGVTVHTGTADGGHYYSFIRDRTSPNKDKWFLFNDAEVKPFD 2168

Query: 109  SSQLAAECFGGEMT 122
             +Q+AAECFGGEMT
Sbjct: 2169 PNQIAAECFGGEMT 2182

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380025402|ref|XP_003696463.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 34-like [Apis florea]

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 94/132 (71%), Positives = 106/132 (80%), Gaps = 11/132 (8%)

Query: 1    MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQE-----EKLKSEARGEGEV 55
            MRYTFNM TM KEKVNTHFSFP+RLDMSGYVEK L+PQHYQE     EK KSE+  + E+
Sbjct: 2061 MRYTFNMGTMSKEKVNTHFSFPLRLDMSGYVEKKLIPQHYQEEKKAFEKRKSESDCQSEL 2120

Query: 56   GGEGGEDFNENYEYELIGVTVHTGTADGGHYYSFIRDR-----DKWLLFNDAEVKHFDSS 110
              + G +  E+Y+Y+LIGVTVHTGTADGGHYYSFIRDR     DKW LFNDAEVK FD +
Sbjct: 2121 NDDDGTEM-EHYQYDLIGVTVHTGTADGGHYYSFIRDRTSPNKDKWFLFNDAEVKPFDPN 2179

Query: 111  QLAAECFGGEMT 122
            Q+AAECFGGEMT
Sbjct: 2180 QIAAECFGGEMT 2191

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270010424|gb|EFA06872.1| hypothetical protein TcasGA2_TC009817 [Tribolium castaneum]

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 91/127 (71%), Positives = 101/127 (79%), Gaps = 17/127 (13%)

Query: 1    MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGG 60
            MRYTFNM+TMLKEKVNTHFSFP+RL+M+GYVEK LMPQHYQE+KLK              
Sbjct: 1970 MRYTFNMLTMLKEKVNTHFSFPLRLNMAGYVEKQLMPQHYQEDKLKQY------------ 2017

Query: 61   EDFNENYEYELIGVTVHTGTADGGHYYSFIRD-----RDKWLLFNDAEVKHFDSSQLAAE 115
            E  +E YEY+LIGVTVHTGTADGGHYYSFI+D     RDKW LFNDAEVK FD +Q+AAE
Sbjct: 2018 EPEDEQYEYDLIGVTVHTGTADGGHYYSFIKDRTAGSRDKWFLFNDAEVKPFDPNQIAAE 2077

Query: 116  CFGGEMT 122
            CFGGEMT
Sbjct: 2078 CFGGEMT 2084

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307187156|gb|EFN72399.1| Ubiquitin carboxyl-terminal hydrolase 34 [Camponotus floridanus]

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 95/140 (67%), Positives = 106/140 (75%), Gaps = 18/140 (12%)

Query: 1    MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQE-------EKLKSEARGEG 53
            MRYTFNM TMLKEKVNTHFSFP+RLDMSGYVEK LMPQHYQ+       EK KSE  G  
Sbjct: 2051 MRYTFNMGTMLKEKVNTHFSFPLRLDMSGYVEKKLMPQHYQDEKKAVSSEKRKSENDGHS 2110

Query: 54   ------EVGGEGGEDFNENYEYELIGVTVHTGTADGGHYYSFIRDR-----DKWLLFNDA 102
                  +V  +  ++  E+Y+Y+LIGVTVHTGTADGGHYYSFIRDR     DKW LFNDA
Sbjct: 2111 RSLLVDDVEDQVQQEEMEHYQYDLIGVTVHTGTADGGHYYSFIRDRTSPNKDKWFLFNDA 2170

Query: 103  EVKHFDSSQLAAECFGGEMT 122
            EVK FD +Q+AAECFGGEMT
Sbjct: 2171 EVKPFDPNQIAAECFGGEMT 2190

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
UNIPROTKB|F1NSF6	3420	USP34 "Ubiquitin carboxyl-term	0.538	0.033	0.592	9.7e-37
UNIPROTKB|Q70CQ2	3546	USP34 "Ubiquitin carboxyl-term	0.538	0.031	0.592	2.8e-36
UNIPROTKB|F1SQM5	2974	LOC100625426 "Ubiquitin carbox	0.538	0.037	0.592	3e-36
UNIPROTKB|I3LLU6	2989	LOC100625426 "Ubiquitin carbox	0.538	0.037	0.592	3e-36
UNIPROTKB|F1PXQ0	3533	USP34 "Ubiquitin carboxyl-term	0.538	0.031	0.592	3.5e-36
UNIPROTKB|F1N0A8	3548	USP34 "Ubiquitin carboxyl-term	0.538	0.031	0.592	3.5e-36
UNIPROTKB|G3MYZ7	3558	USP34 "Ubiquitin carboxyl-term	0.538	0.031	0.592	3.6e-36
UNIPROTKB|F1LYJ4	3228	Usp34 "Ubiquitin carboxyl-term	0.538	0.035	0.592	1.5e-35
UNIPROTKB|F1M791	3311	Usp34 "Ubiquitin carboxyl-term	0.538	0.034	0.592	1.6e-35
MGI|MGI:109473	3582	Usp34 "ubiquitin specific pept	0.538	0.031	0.592	2e-35

UNIPROTKB|F1NSF6 USP34 "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)]

 Score = 360 (131.8 bits), Expect = 9.7e-37, Sum P(2) = 9.7e-37
 Identities = 77/130 (59%), Positives = 88/130 (67%)

Query:     1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARXXXXXXXXXX 60
             MRYTFNMVTM+KEKVNTHFSFP+RLDM+ Y E  LM ++ ++E  K +            
Sbjct:  1959 MRYTFNMVTMMKEKVNTHFSFPLRLDMTPYTEDFLMGKNDRKEGFKEDGEYLKETESYEY 2018

Query:    61 XXXXXXXXXXLIGVTVHTGTADGGHYYSFIRD--------RDKWLLFNDAEVKHFDSSQL 112
                       LIGVTVHTGTADGGHYYSFIRD         +KW LFNDAEVK FDS+QL
Sbjct:  2019 D---------LIGVTVHTGTADGGHYYSFIRDIVNPHAYKNNKWYLFNDAEVKPFDSTQL 2069

Query:   113 AAECFGGEMT 122
             A+ECFGGEMT
Sbjct:  2070 ASECFGGEMT 2079

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0071108 "protein K48-linked deubiquitination" evidence=IEA

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IEA

UNIPROTKB|Q70CQ2 USP34 "Ubiquitin carboxyl-terminal hydrolase 34" [Homo sapiens (taxid:9606)]

 Score = 356 (130.4 bits), Expect = 2.8e-36, Sum P(2) = 2.8e-36
 Identities = 77/130 (59%), Positives = 87/130 (66%)

Query:     1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARXXXXXXXXXX 60
             MRYTFNMVTM+KEKVNTHFSFP+RLDM+ Y E  LM +  ++E  K  +           
Sbjct:  2089 MRYTFNMVTMMKEKVNTHFSFPLRLDMTPYTEDFLMGKSERKEGFKEVS---------DH 2139

Query:    61 XXXXXXXXXXLIGVTVHTGTADGGHYYSFIRD--------RDKWLLFNDAEVKHFDSSQL 112
                       LIGVTVHTGTADGGHYYSFIRD         +KW LFNDAEVK FDS+QL
Sbjct:  2140 SKDSESYEYDLIGVTVHTGTADGGHYYSFIRDIVNPHAYKNNKWYLFNDAEVKPFDSAQL 2199

Query:   113 AAECFGGEMT 122
             A+ECFGGEMT
Sbjct:  2200 ASECFGGEMT 2209

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IDA

GO:0071108 "protein K48-linked deubiquitination" evidence=IDA

GO:0004843 "ubiquitin-specific protease activity" evidence=IDA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IDA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IMP

UNIPROTKB|F1SQM5 LOC100625426 "Ubiquitin carboxyl-terminal hydrolase" [Sus scrofa (taxid:9823)]

 Score = 354 (129.7 bits), Expect = 3.0e-36, Sum P(2) = 3.0e-36
 Identities = 77/130 (59%), Positives = 86/130 (66%)

Query:     1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARXXXXXXXXXX 60
             MRYTFNMVTM+KEKVNTHFSFP+RLDM+ Y E  LM +  ++E  K              
Sbjct:  2089 MRYTFNMVTMMKEKVNTHFSFPLRLDMTPYTEDFLMGKSDRKEGFKEVG---------DH 2139

Query:    61 XXXXXXXXXXLIGVTVHTGTADGGHYYSFIRD--------RDKWLLFNDAEVKHFDSSQL 112
                       LIGVTVHTGTADGGHYYSFIRD         +KW LFNDAEVK FDS+QL
Sbjct:  2140 SKDTESYEYDLIGVTVHTGTADGGHYYSFIRDIVNPHAYKNNKWYLFNDAEVKPFDSAQL 2199

Query:   113 AAECFGGEMT 122
             A+ECFGGEMT
Sbjct:  2200 ASECFGGEMT 2209

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|I3LLU6 LOC100625426 "Ubiquitin carboxyl-terminal hydrolase" [Sus scrofa (taxid:9823)]

 Score = 354 (129.7 bits), Expect = 3.0e-36, Sum P(2) = 3.0e-36
 Identities = 77/130 (59%), Positives = 86/130 (66%)

Query:     1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARXXXXXXXXXX 60
             MRYTFNMVTM+KEKVNTHFSFP+RLDM+ Y E  LM +  ++E  K              
Sbjct:  2104 MRYTFNMVTMMKEKVNTHFSFPLRLDMTPYTEDFLMGKSDRKEGFKEVG---------DH 2154

Query:    61 XXXXXXXXXXLIGVTVHTGTADGGHYYSFIRD--------RDKWLLFNDAEVKHFDSSQL 112
                       LIGVTVHTGTADGGHYYSFIRD         +KW LFNDAEVK FDS+QL
Sbjct:  2155 SKDTESYEYDLIGVTVHTGTADGGHYYSFIRDIVNPHAYKNNKWYLFNDAEVKPFDSAQL 2214

Query:   113 AAECFGGEMT 122
             A+ECFGGEMT
Sbjct:  2215 ASECFGGEMT 2224

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0071108 "protein K48-linked deubiquitination" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|F1PXQ0 USP34 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)]

 Score = 355 (130.0 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
 Identities = 77/130 (59%), Positives = 87/130 (66%)

Query:     1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARXXXXXXXXXX 60
             MRYTFNMVTM+KEKVNTHFSFP+RLDM+ Y E  LM +  ++E  K  +           
Sbjct:  2076 MRYTFNMVTMMKEKVNTHFSFPLRLDMTPYTEDFLMGKSDRKEGFKEVS---------DH 2126

Query:    61 XXXXXXXXXXLIGVTVHTGTADGGHYYSFIRD--------RDKWLLFNDAEVKHFDSSQL 112
                       LIGVTVHTGTADGGHYYSFIRD         +KW LFNDAEVK FDS+QL
Sbjct:  2127 SKDTESYEYDLIGVTVHTGTADGGHYYSFIRDIVNPHAYKNNKWYLFNDAEVKPFDSAQL 2186

Query:   113 AAECFGGEMT 122
             A+ECFGGEMT
Sbjct:  2187 ASECFGGEMT 2196

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0071108 "protein K48-linked deubiquitination" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|F1N0A8 USP34 "Ubiquitin carboxyl-terminal hydrolase" [Bos taurus (taxid:9913)]

 Score = 355 (130.0 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
 Identities = 77/130 (59%), Positives = 87/130 (66%)

Query:     1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARXXXXXXXXXX 60
             MRYTFNMVTM+KEKVNTHFSFP+RLDM+ Y E  LM +  ++E  K  +           
Sbjct:  2091 MRYTFNMVTMMKEKVNTHFSFPLRLDMTPYTEDFLMGKSDRKEGFKEVS---------DH 2141

Query:    61 XXXXXXXXXXLIGVTVHTGTADGGHYYSFIRD--------RDKWLLFNDAEVKHFDSSQL 112
                       LIGVTVHTGTADGGHYYSFIRD         +KW LFNDAEVK FDS+QL
Sbjct:  2142 SKDTESYEYDLIGVTVHTGTADGGHYYSFIRDIVNPHAYKNNKWYLFNDAEVKPFDSAQL 2201

Query:   113 AAECFGGEMT 122
             A+ECFGGEMT
Sbjct:  2202 ASECFGGEMT 2211

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|G3MYZ7 USP34 "Ubiquitin carboxyl-terminal hydrolase" [Bos taurus (taxid:9913)]

 Score = 355 (130.0 bits), Expect = 3.6e-36, Sum P(2) = 3.6e-36
 Identities = 77/130 (59%), Positives = 87/130 (66%)

Query:     1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARXXXXXXXXXX 60
             MRYTFNMVTM+KEKVNTHFSFP+RLDM+ Y E  LM +  ++E  K  +           
Sbjct:  2101 MRYTFNMVTMMKEKVNTHFSFPLRLDMTPYTEDFLMGKSDRKEGFKEVS---------DH 2151

Query:    61 XXXXXXXXXXLIGVTVHTGTADGGHYYSFIRD--------RDKWLLFNDAEVKHFDSSQL 112
                       LIGVTVHTGTADGGHYYSFIRD         +KW LFNDAEVK FDS+QL
Sbjct:  2152 SKDTESYEYDLIGVTVHTGTADGGHYYSFIRDIVNPHAYKNNKWYLFNDAEVKPFDSAQL 2211

Query:   113 AAECFGGEMT 122
             A+ECFGGEMT
Sbjct:  2212 ASECFGGEMT 2221

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0071108 "protein K48-linked deubiquitination" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|F1LYJ4 Usp34 "Ubiquitin carboxyl-terminal hydrolase" [Rattus norvegicus (taxid:10116)]

 Score = 354 (129.7 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
 Identities = 77/130 (59%), Positives = 86/130 (66%)

Query:     1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARXXXXXXXXXX 60
             MRYTFNMVTM+KEKVNTHFSFP+RLDM+ Y E  LM +  ++E  K              
Sbjct:  1858 MRYTFNMVTMMKEKVNTHFSFPLRLDMTPYTEDFLMGKSDRKEGFKDVG---------DH 1908

Query:    61 XXXXXXXXXXLIGVTVHTGTADGGHYYSFIRD--------RDKWLLFNDAEVKHFDSSQL 112
                       LIGVTVHTGTADGGHYYSFIRD         +KW LFNDAEVK FDS+QL
Sbjct:  1909 SKDTESYEYDLIGVTVHTGTADGGHYYSFIRDIVNPHAYKNNKWYLFNDAEVKPFDSAQL 1968

Query:   113 AAECFGGEMT 122
             A+ECFGGEMT
Sbjct:  1969 ASECFGGEMT 1978

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

UNIPROTKB|F1M791 Usp34 "Ubiquitin carboxyl-terminal hydrolase" [Rattus norvegicus (taxid:10116)]

 Score = 354 (129.7 bits), Expect = 1.6e-35, Sum P(2) = 1.6e-35
 Identities = 77/130 (59%), Positives = 86/130 (66%)

Query:     1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARXXXXXXXXXX 60
             MRYTFNMVTM+KEKVNTHFSFP+RLDM+ Y E  LM +  ++E  K              
Sbjct:  1858 MRYTFNMVTMMKEKVNTHFSFPLRLDMTPYTEDFLMGKSDRKEGFKDVG---------DH 1908

Query:    61 XXXXXXXXXXLIGVTVHTGTADGGHYYSFIRD--------RDKWLLFNDAEVKHFDSSQL 112
                       LIGVTVHTGTADGGHYYSFIRD         +KW LFNDAEVK FDS+QL
Sbjct:  1909 SKDTESYEYDLIGVTVHTGTADGGHYYSFIRDIVNPHAYKNNKWYLFNDAEVKPFDSAQL 1968

Query:   113 AAECFGGEMT 122
             A+ECFGGEMT
Sbjct:  1969 ASECFGGEMT 1978

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

MGI|MGI:109473 Usp34 "ubiquitin specific peptidase 34" [Mus musculus (taxid:10090)]

 Score = 354 (129.7 bits), Expect = 2.0e-35, Sum P(2) = 2.0e-35
 Identities = 77/130 (59%), Positives = 86/130 (66%)

Query:     1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARXXXXXXXXXX 60
             MRYTFNMVTM+KEKVNTHFSFP+RLDM+ Y E  LM +  ++E  K              
Sbjct:  2126 MRYTFNMVTMMKEKVNTHFSFPLRLDMTPYTEDFLMGKSDRKEGFKDVG---------DR 2176

Query:    61 XXXXXXXXXXLIGVTVHTGTADGGHYYSFIRD--------RDKWLLFNDAEVKHFDSSQL 112
                       LIGVTVHTGTADGGHYYSFIRD         +KW LFNDAEVK FDS+QL
Sbjct:  2177 SKDTESYEYDLIGVTVHTGTADGGHYYSFIRDIVNPHAYKNNKWYLFNDAEVKPFDSAQL 2236

Query:   113 AAECFGGEMT 122
             A+ECFGGEMT
Sbjct:  2237 ASECFGGEMT 2246

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISO

GO:0004221 "ubiquitin thiolesterase activity" evidence=ISO

GO:0004843 "ubiquitin-specific protease activity" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0006508 "proteolysis" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0071108 "protein K48-linked deubiquitination" evidence=ISO

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q70CQ2	UBP34_HUMAN	3, ., 4, ., 1, 9, ., 1, 2	0.6335	0.5428	0.0321	yes	N/A
Q6ZQ93	UBP34_MOUSE	3, ., 4, ., 1, 9, ., 1, 2	0.6335	0.5428	0.0318	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19	LOW CONFIDENCE prediction!
3rd Layer	3.4.19.12	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	210
cd02659	334	cd02659, peptidase_C19C, A subfamily of Peptidase	2e-45
cd02257	255	cd02257, Peptidase_C19, Peptidase C19 contains ubi	3e-19
pfam00443	313	pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol	6e-15
cd02660	328	cd02660, Peptidase_C19D, A subfamily of Peptidase	3e-13
cd02668	324	cd02668, Peptidase_C19L, A subfamily of Peptidase	3e-13
COG5077	1089	COG5077, COG5077, Ubiquitin carboxyl-terminal hydr	1e-11
cd02674	230	cd02674, Peptidase_C19R, A subfamily of peptidase	5e-10
cd02661	304	cd02661, Peptidase_C19E, A subfamily of Peptidase	6e-09
cd02657	305	cd02657, Peptidase_C19A, A subfamily of Peptidase	1e-07
cd02665	228	cd02665, Peptidase_C19I, A subfamily of Peptidase	9e-07
cd02667	279	cd02667, Peptidase_C19K, A subfamily of Peptidase	6e-06
cd02664	327	cd02664, Peptidase_C19H, A subfamily of Peptidase	7e-06
cd02658	311	cd02658, Peptidase_C19B, A subfamily of Peptidase	4e-05
cd02663	300	cd02663, Peptidase_C19G, A subfamily of Peptidase	5e-05
pfam13423	296	pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr	2e-04
COG5533	415	COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos	7e-04
cd02666	343	cd02666, Peptidase_C19J, A subfamily of Peptidase	9e-04
cd02671	332	cd02671, Peptidase_C19O, A subfamily of Peptidase	0.003

>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19

 Score =  153 bits (388), Expect = 2e-45
 Identities = 54/124 (43%), Positives = 66/124 (53%), Gaps = 19/124 (15%)

Query: 1   MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGG 60
            R+ F+  TM++ K+N  F FP+ LDM  Y EK L  +    EK  SE            
Sbjct: 201 KRFEFDFETMMRIKINDRFEFPLELDMEPYTEKGLAKKEGDSEKKDSE------------ 248

Query: 61  EDFNENYEYELIGVTVHTGTADGGHYYSFIRDR--DKWLLFNDAEVKHFDSSQLAAECFG 118
                +Y YEL GV VH+G A GGHYYS+I+DR   KW  FND  V  FD +    ECFG
Sbjct: 249 -----SYIYELHGVLVHSGDAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFG 303

Query: 119 GEMT 122
           GE T
Sbjct: 304 GEET 307

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 334

>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases

 Score = 82.5 bits (204), Expect = 3e-19
 Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 26/114 (22%)

Query: 1   MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGG 60
            R++FN     KEK+NT  SFP+ LD+S Y+ +                           
Sbjct: 148 KRFSFNE-DGTKEKLNTKVSFPLELDLSPYLSEGEKDS---------------------- 184

Query: 61  EDFNENYEYELIGVTVHTGT-ADGGHYYSFIRDR--DKWLLFNDAEVKHFDSSQ 111
           +  N +Y+YEL+ V VH+GT AD GHY ++++D    KW  FND +V      +
Sbjct: 185 DSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEE 238

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 255

>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase

 Score = 71.7 bits (176), Expect = 6e-15
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 30/106 (28%)

Query: 3   YTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGED 62
             FN  T   +K++    FP+ LD+S Y+E+ L  +                        
Sbjct: 218 EDFNRETE--KKISDRVEFPLELDLSSYLEEELEGE------------------------ 251

Query: 63  FNENYEYELIGVTVHTG-TADGGHYYSFIR--DRDKWLLFNDAEVK 105
                +YEL+ V VH+G +  GGHY ++I+  +++KW+ F+D +V 
Sbjct: 252 -EPPTKYELVAVVVHSGSSLSGGHYIAYIKKREKNKWVKFDDEKVS 296

Length = 313

>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19

 Score = 67.0 bits (164), Expect = 3e-13
 Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 21/107 (19%)

Query: 13  EKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYELI 72
            K++T+  FP+ L+M+ Y           + +  +                + +Y Y+L 
Sbjct: 236 RKIDTYVQFPLELNMTPY-----TSSSIGDTQDSNS--------------LDPDYTYDLF 276

Query: 73  GVTVHTGTADGGHYYSFIRDR-DKWLLFNDAEVKHFDSSQ-LAAECF 117
            V VH GT D GHY ++ R    +W  F+DA +      + L ++ +
Sbjct: 277 AVVVHKGTLDTGHYTAYCRQGDGQWFKFDDAMITRVSEEEVLKSQAY 323

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 328

>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19

 Score = 66.7 bits (163), Expect = 3e-13
 Identities = 34/115 (29%), Positives = 46/115 (40%), Gaps = 31/115 (26%)

Query: 1   MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGG 60
           +R+ F+  T  K+K+N   SFP  LDM  Y    L                         
Sbjct: 206 LRFVFDRKTGAKKKLNASISFPEILDMGEY----LAESDEG------------------- 242

Query: 61  EDFNENYEYELIGVTVHTGT-ADGGHYYSFIRD--RDKWLLFNDAEVKHFDSSQL 112
                +Y YEL GV +H G  A  GHY + I+D    +W  FND +V+      L
Sbjct: 243 -----SYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPL 292

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 324

>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 62.6 bits (152), Expect = 1e-11
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 26/121 (21%)

Query: 2   RYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGE 61
           R+ ++    +  K+N  + FP+ +D+  ++++         +  KSE             
Sbjct: 388 RFEYDFERDMMVKINDRYEFPLEIDLLPFLDR---------DADKSE------------- 425

Query: 62  DFNENYEYELIGVTVHTGTADGGHYYSFIRDR--DKWLLFNDAEVKHFDSSQLAAECFGG 119
             N +  Y L GV VH+G    GHYY+ ++     +W  F+D  V      ++  E FGG
Sbjct: 426 --NSDAVYVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGG 483

Query: 120 E 120
           +
Sbjct: 484 D 484

Length = 1089

>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19

 Score = 56.9 bits (138), Expect = 5e-10
 Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 30/109 (27%)

Query: 5   FNMVTMLKEKVNTHFSFPMR-LDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDF 63
           F+       K+ T  +FP+  LD++ YV+                              F
Sbjct: 136 FSFSRGSTRKLTTPVTFPLNDLDLTPYVD---------------------------TRSF 168

Query: 64  NENYEYELIGVTVHTGTADGGHYYSFIRD--RDKWLLFNDAEVKHFDSS 110
              ++Y+L  V  H G+ +GGHY ++ ++   + W  F+D+ V     S
Sbjct: 169 TGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSES 217

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 230

>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19

 Score = 54.2 bits (131), Expect = 6e-09
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 32/109 (29%)

Query: 5   FNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFN 64
           F+       K+N   SFP  LD+S Y+ +   P                           
Sbjct: 214 FSNFRG--GKINKQISFPETLDLSPYMSQ---PND------------------------- 243

Query: 65  ENYEYELIGVTVHTGT-ADGGHYYSFIRDRD-KWLLFNDAEVKHFDSSQ 111
              +Y+L  V VH+G     GHYY +++  + KW   +D++V       
Sbjct: 244 GPLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDDSKVSPVSIET 292

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 304

>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 3/39 (7%)

Query: 69  YELIGVTVHTG-TADGGHYYSFIR--DRDKWLLFNDAEV 104
           YEL+ V  H G +AD GHY +++R  +  KW+ F+D +V
Sbjct: 241 YELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKV 279

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 305

>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19

 Score = 47.6 bits (113), Expect = 9e-07
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 69  YELIGVTVHTGTADGGHYYSFI--RDRDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNA 126
           YEL  V VH G A+ GHY+++I  + R +W  +ND  V      ++  + FGG       
Sbjct: 164 YELHAVLVHEGQANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAY 223

Query: 127 CL 128
           CL
Sbjct: 224 CL 225

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 228

>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 23/82 (28%)

Query: 14  KVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYELIG 73
           KV+ H SFP  LD++ +      P+    E                      +  Y L G
Sbjct: 170 KVSRHVSFPEILDLAPF----CDPKCNSSED-------------------KSSVLYRLYG 206

Query: 74  VTVHTGTADGGHYYSFIRDRDK 95
           V  H+GT   GHY ++++ R  
Sbjct: 207 VVEHSGTMRSGHYVAYVKVRPP 228

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 279

>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 32/134 (23%)

Query: 2   RYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGE 61
           R++++  T ++EK+  + S    L +   VE        ++++ +S   GE         
Sbjct: 185 RFSYDQKTHVREKIMDNVSINEVLSLPVRVESKSSESPLEKKEEESGDDGELVT------ 238

Query: 62  DFNENYEYELIGVTVHTGTA-DGGHYYSFIRD----------------------RDKWLL 98
                  Y L  V VH+G + + GHY+++ RD                         W L
Sbjct: 239 ---RQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYL 295

Query: 99  FNDAEVKHFDSSQL 112
           FND+ V       +
Sbjct: 296 FNDSRVTFSSFESV 309

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 327

>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 5/41 (12%)

Query: 69  YELIGVTVHTGT-ADGGHYYSFIR----DRDKWLLFNDAEV 104
           YELI    H GT    GHY + I+       KW+LFND +V
Sbjct: 252 YELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKV 292

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 311

>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 62  DFNENYE--YELIGVTVHTG-TADGGHYYSFIRDRDKWLLFNDAEVKHFDSSQL 112
           D  EN +  YEL+ V VH G   + GHY S ++    WLLF+D  V+  D + +
Sbjct: 228 DDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKSHGGWLLFDDETVEKIDENAV 281

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 300

>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 60  GEDFNENYEYELIGVTVHTG-TADGGHYYSFIR----DRDKWLLFND 101
               + N++YEL GV  H G +   GH  SFIR    + D+W LFND
Sbjct: 247 EGPLSGNFKYELQGVVCHIGDSTHSGHLVSFIRVAPSEDDQWYLFND 293

Length = 296

>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 39.6 bits (92), Expect = 7e-04
 Identities = 15/37 (40%), Positives = 26/37 (70%)

Query: 69  YELIGVTVHTGTADGGHYYSFIRDRDKWLLFNDAEVK 105
           Y L+GV  H GT +GGHY+S ++    W +++D++V+
Sbjct: 357 YSLLGVVCHNGTLNGGHYFSEVKRSGTWNVYDDSQVR 393

Length = 415

>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19

 Score = 39.0 bits (91), Expect = 9e-04
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 66  NYEYELIGVTVHTGTADGGHYYSFIRDRDK--WLLFNDAEVKHFDSS 110
           +Y Y L  V +H G A  GHY+ +I+D ++  W  +ND  V    +S
Sbjct: 278 SYGYRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPAS 324

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 343

>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19

 Score = 37.2 bits (86), Expect = 0.003
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 5/49 (10%)

Query: 58  EGGEDFNENYEYELIGVTVHTG-TADGGHYYSFIRDRDKWLLFNDAEVK 105
           E      +N  Y L  V +H+G T   GHY +++R    WLLF+D+EVK
Sbjct: 261 EEWSTKPKNDVYRLFAVVMHSGATISSGHYTAYVR----WLLFDDSEVK 305

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 332

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	210
1vjv_A	415	Crystal Structure Of Ubiquitin Carboxyl-terminal Hy		6e-05

>pdb|1VJV|A Chain A, Crystal Structure Of Ubiquitin Carboxyl-terminal Hydrolase 6 (yfr010w) From Saccharomyces Cerevisiae At 1.74 A Resolution Length = 415

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 71  LIGVTVHTG-TADGGHYYSFIRDR---DKWLLFNDAEVKHFDSSQLAAECFGGE 120
           LIGV  H G  ++ GHY +FIRD    +KW  FND +V   +  ++ +   GGE
Sbjct: 348 LIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGE 401

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	210
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	6e-25
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	2e-24
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	3e-22
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	8e-19
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	3e-16
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	3e-12
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	4e-12
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	2e-11
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	9e-11
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	2e-10

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353

 Score = 98.8 bits (246), Expect = 6e-25
 Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 29/122 (23%)

Query: 1   MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGG 60
           MR+ ++  T    K+N  F FP +L +  +++K                           
Sbjct: 200 MRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKT-------------------------- 233

Query: 61  EDFNENYEYELIGVTVHTGTADGGHYYSFIRDR--DKWLLFNDAEVKHFDSSQLAAECFG 118
            D  +   Y L  V VH+G   GGHY  ++  +   KW  F+D  V      +     +G
Sbjct: 234 -DPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYG 292

Query: 119 GE 120
           G 
Sbjct: 293 GH 294

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 99.3 bits (247), Expect = 2e-24
 Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 29/122 (23%)

Query: 1   MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGG 60
           MR+ ++  T    K+N  F FP +L +  +++K                           
Sbjct: 369 MRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKT-------------------------- 402

Query: 61  EDFNENYEYELIGVTVHTGTADGGHYYSFIRDR--DKWLLFNDAEVKHFDSSQLAAECFG 118
            D  +   Y L  V VH+G   GGHY  ++  +   KW  F+D  V      +     +G
Sbjct: 403 -DPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYG 461

Query: 119 GE 120
           G 
Sbjct: 462 GH 463

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404

 Score = 92.0 bits (228), Expect = 3e-22
 Identities = 27/143 (18%), Positives = 48/143 (33%), Gaps = 23/143 (16%)

Query: 1   MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGG 60
           +R+ +     +  KV     FP+ LDM       L  +         +   +        
Sbjct: 239 VRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNT 298

Query: 61  EDF---------------------NENYEYELIGVTVHTG-TADGGHYYSFIRDR-DKWL 97
            D                      N    Y+L  V  H G ++  GHY S+++ + D+W+
Sbjct: 299 SDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWI 358

Query: 98  LFNDAEVKHFDSSQLAAECFGGE 120
            F+D +V       +     GG+
Sbjct: 359 KFDDDKVSIVTPEDILRLSGGGD 381

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476

 Score = 82.7 bits (204), Expect = 8e-19
 Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 21/117 (17%)

Query: 1   MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGG 60
            R+   +      K++    FP  L+M  Y       +H +  K                
Sbjct: 368 KRFEHLL-NGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGK---------------- 410

Query: 61  EDFNENYEYELIGVTVHTGTADGGHYYSFIRDR-DKWLLFNDAEVKHFDSSQLAAEC 116
                +  YELIG+  H GT + GHY +F +    +W  FND+ V      ++  E 
Sbjct: 411 ---VPDIIYELIGIVSHKGTVNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQ 464

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415

 Score = 75.3 bits (184), Expect = 3e-16
 Identities = 34/171 (19%), Positives = 57/171 (33%), Gaps = 51/171 (29%)

Query: 1   MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQ------------------- 41
           +R+ +   T  K K+     FP +LD++  +      +  +                   
Sbjct: 231 VRFFWKRSTNKKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREI 290

Query: 42  ----------------------------EEKLKSEARGEGEVGGEGGEDFNENYEYELIG 73
                                        EK +     +        +  N +  Y LIG
Sbjct: 291 KRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIG 350

Query: 74  VTVHTG-TADGGHYYSFIR---DRDKWLLFNDAEVKHFDSSQLAAECFGGE 120
           V  H G  ++ GHY +FIR   D +KW  FND +V   +  ++ +   GGE
Sbjct: 351 VITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGE 401

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348

 Score = 63.3 bits (154), Expect = 3e-12
 Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 32/110 (29%)

Query: 5   FNMVTMLKEKVNTHFSFPMR-LDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDF 63
           F+   +   K+ T  +FP+R LD+  +  ++                             
Sbjct: 248 FSESRIRTSKLTTFVNFPLRDLDLREFASEN----------------------------- 278

Query: 64  NENYEYELIGVTVHTGTADGGHYYSFIRD--RDKWLLFNDAEVKHFDSSQ 111
             +  Y L  V+ H+GT  GGHY ++ R     +W  FND+ V    SSQ
Sbjct: 279 TNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQ 328

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355

 Score = 63.1 bits (153), Expect = 4e-12
 Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 30/109 (27%)

Query: 5   FNMVTMLKEKVNTHFSFPMR-LDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDF 63
           F+      +K +    FP++ L +  +                               D 
Sbjct: 258 FSASRGSIKKSSVGVDFPLQRLSLGDFAS-----------------------------DK 288

Query: 64  NENYEYELIGVTVHTGTADGGHYYSFIRDRDKWLLFNDAEVKHFDSSQL 112
             +  Y+L  +  H+G+   GHY +  R +  W ++ND+ V     +Q+
Sbjct: 289 AGSPVYQLYALCNHSGSVHYGHYTALCRCQTGWHVYNDSRVSPVSENQV 337

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367

 Score = 61.1 bits (148), Expect = 2e-11
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 31/111 (27%)

Query: 5   FNMVTMLKEKVNTHFSFPMR-LDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDF 63
           F+     ++K++T   FP+R L+MS +V                                
Sbjct: 263 FSYNRYWRDKLDTVVEFPIRGLNMSEFVC----------------------------NLS 294

Query: 64  NENYEYELIGVTVHTGTADGGHYYSFIRDR--DKWLLFNDAEVKHFDSSQL 112
              Y Y+LI V+ H G    GHY ++ +++   KW  F+D+ V      Q+
Sbjct: 295 ARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQI 345

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396

 Score = 59.5 bits (144), Expect = 9e-11
 Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 31/111 (27%)

Query: 5   FNMVTMLKEKVNTHFSFPMR-LDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDF 63
           F+     K+K+ T   FP+  LD+S YV                                
Sbjct: 300 FSYDGRWKQKLQTSVDFPLENLDLSQYVI----------------------------GPK 331

Query: 64  NENYEYELIGVTVHTGTADGGHYYSFIRD--RDKWLLFNDAEVKHFDSSQL 112
           N   +Y L  V+ H G  DGGHY ++ ++  R +W  F+D EV     S +
Sbjct: 332 NNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSV 382

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854

 Score = 58.8 bits (141), Expect = 2e-10
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 10/87 (11%)

Query: 19  FSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYELIGVTVHT 78
           FS    LD    ++           + +S A    E    G +  +   +Y+L     H 
Sbjct: 756 FSHIDDLDAEAAMD---------ISEGRSAADSISESVPVGPKVRDGPGKYQLFAFISHM 806

Query: 79  GT-ADGGHYYSFIRDRDKWLLFNDAEV 104
           GT    GHY   I+   +W+++ND +V
Sbjct: 807 GTSTMCGHYVCHIKKEGRWVIYNDQKV 833

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	99.93
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	99.93
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	99.93
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.91
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	99.9
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	99.89
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	99.89
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	99.88
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	99.88
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	99.82
2vhf_A	374	Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki	99.05

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A

Probab=99.93  E-value=1e-26  Score=206.28  Aligned_cols=115  Identities=27%  Similarity=0.495  Sum_probs=88.0

Q ss_pred             CccEEecCCceeeecceeeEeCcEEecCcccccccCchhhhHHhhhhhhcCCCCCCCCCCCCCCCCeeEEEeEEEEeeCC
Q psy14778          1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYELIGVTVHTGT   80 (210)
Q Consensus         1 KRF~fd~~t~~~~Ki~~~V~FP~~LDls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~Gs   80 (210)
                      |||.|+..++...|+++.|.||+.|||++|+...                           ....+..|+|+|||+|.|+
T Consensus       200 kRF~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~---------------------------~~~~~~~Y~L~avv~H~G~  252 (353)
T 1nb8_A          200 MRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKT---------------------------DPKDPANYILHAVLVHSGD  252 (353)
T ss_dssp             CCCC--------CCCCCCCBCCSEEECGGGBSSC---------------------------CTTSCCEEEEEEEEEEESS
T ss_pred             ecEEEecccCceEecCcEEECCCeeehhhhhccc---------------------------CCCCCceEEEEEEEEEeCC
Confidence            7999998778889999999999999999999753                           1134578999999999999


Q ss_pred             CCCceeEEEEee--CCcEEEecCCceeeeCHHHHHHHhcCCccccceeeeeeccCCCcceeeecCCCC
Q psy14778         81 ADGGHYYSFIRD--RDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQYIDATPPTSS  146 (210)
Q Consensus        81 ~~sGHY~ayvr~--~~~W~~fdDs~Vs~v~~~~V~~~~~Gg~~~~~~~~L~y~~~~~aY~lfy~r~~~  146 (210)
                      +++|||+||+|.  +++||.|||+.|+.+++++|++.++||......    .....+||||||+|.+.
T Consensus       253 ~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~----~~~~~~aYiLfY~r~~~  316 (353)
T 1nb8_A          253 NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLS----VRHCTNAYMLVYIRESK  316 (353)
T ss_dssp             TTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-----------CCEEEEEEEEEETTT
T ss_pred             CCCcEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCCccccc----cCcCCeEEEEEEEECch
Confidence            899999999996  889999999999999999999999998754211    12345688888887764

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9

Probab=99.93  E-value=5.1e-26  Score=205.00  Aligned_cols=133  Identities=28%  Similarity=0.453  Sum_probs=97.0

Q ss_pred             CccEEecCCceeeecceeeEeCcEEecCcccccccCchhh------hHH-hhhhhh-----cCC----------------
Q psy14778          1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHY------QEE-KLKSEA-----RGE----------------   52 (210)
Q Consensus         1 KRF~fd~~t~~~~Ki~~~V~FP~~LDls~~~~~~~~~~~~------~~~-~~~~~~-----~~~----------------   52 (210)
                      |||.|+..++...|+++.|.||.+|||++|+.........      .+. ....+.     ++.                
T Consensus       231 kRF~~~~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e  310 (415)
T 1vjv_A          231 VRFFWKRSTNKKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQY  310 (415)
T ss_dssp             CCEEEETTTTEEEECCCCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHH
T ss_pred             EEEEEeCCCCcchhhcCccCCCcEeEhHHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccccccccchhh
Confidence            7999999888999999999999999999999865321100      000 000000     000                


Q ss_pred             -------------------CCCCCCCCCCCCCCeeEEEeEEEEeeC-CCCCceeEEEEee---CCcEEEecCCceeeeCH
Q psy14778         53 -------------------GEVGGEGGEDFNENYEYELIGVTVHTG-TADGGHYYSFIRD---RDKWLLFNDAEVKHFDS  109 (210)
Q Consensus        53 -------------------~~~~~~~~~~~~~~~~Y~L~aVV~H~G-s~~sGHY~ayvr~---~~~W~~fdDs~Vs~v~~  109 (210)
                                         .+..+..+........|+|+|||+|.| ++++|||+||+|.   +++||+|||+.|+.+++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~  390 (415)
T 1vjv_A          311 ETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEK  390 (415)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECH
T ss_pred             hhchhhHHhhhhhhhhhcccccccccccccCCCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCH
Confidence                               000000112234568999999999999 8999999999998   89999999999999999


Q ss_pred             HHHHHHhcCCccccceeeeeeccCCCcceeeecCCC
Q psy14778        110 SQLAAECFGGEMTVLNACLKLLSTAPQYIDATPPTS  145 (210)
Q Consensus       110 ~~V~~~~~Gg~~~~~~~~L~y~~~~~aY~lfy~r~~  145 (210)
                      ++|.+..+||.+            .+||||||+|.+
T Consensus       391 ~~v~~~~~g~~~------------~~aYiLfY~r~~  414 (415)
T 1vjv_A          391 EKIESLAGGGES------------DSALILMYKGFG  414 (415)
T ss_dssp             HHHHGGGCCTTS------------CEEEEEEEEETT
T ss_pred             HHHhhhcCCCCc------------ceEEEEEEEecC
Confidence            999998888754            348888888754

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A

Probab=99.93  E-value=5.1e-26  Score=203.40  Aligned_cols=138  Identities=21%  Similarity=0.361  Sum_probs=96.5

Q ss_pred             CccEEecCCceeeecceeeEeCcEEecCcccccccCchhhhHHh-------hhhhh---c-CCC----------CCCCCC
Q psy14778          1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEK-------LKSEA---R-GEG----------EVGGEG   59 (210)
Q Consensus         1 KRF~fd~~t~~~~Ki~~~V~FP~~LDls~~~~~~~~~~~~~~~~-------~~~~~---~-~~~----------~~~~~~   59 (210)
                      |||.|+..++...|+++.|.||+.|||.+|+.............       ...+.   + .+.          ......
T Consensus       239 kRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  318 (404)
T 2ayn_A          239 VRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFAD  318 (404)
T ss_dssp             ECBCCCCSSSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC----------------------CCCCCSC
T ss_pred             EEEEEecccCceeccCceeccCceeEHhHhcChhhhhhcchhhhHHhhhhcccchhhhhhcccccccccccccccccccc
Confidence            79999988888899999999999999999998642110000000       00000   0 000          000001


Q ss_pred             CCCCCCCeeEEEeEEEEeeC-CCCCceeEEEEee-CCcEEEecCCceeeeCHHHHHHHhcCCccccceeeeeeccCCCcc
Q psy14778         60 GEDFNENYEYELIGVTVHTG-TADGGHYYSFIRD-RDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQY  137 (210)
Q Consensus        60 ~~~~~~~~~Y~L~aVV~H~G-s~~sGHY~ayvr~-~~~W~~fdDs~Vs~v~~~~V~~~~~Gg~~~~~~~~L~y~~~~~aY  137 (210)
                      +........|+|+|||+|.| ++++|||+||+|. +++||+|||+.|+.+++++|++..+||.+            .+||
T Consensus       319 ~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~------------~~aY  386 (404)
T 2ayn_A          319 DIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDW------------HIAY  386 (404)
T ss_dssp             TTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGSSSSS------------CEEE
T ss_pred             ccCcCCCceEEEEEEEEecCCCCCCCCeEEEEECCCCeEEEeecccceecCHHHHHhhhCCCCC------------ceEE
Confidence            11234568999999999999 7999999999999 99999999999999999999988888754            4589


Q ss_pred             eeeecCCCCCccc
Q psy14778        138 IDATPPTSSRLVQ  150 (210)
Q Consensus       138 ~lfy~r~~~~~~~  150 (210)
                      ||||+|.+...++
T Consensus       387 iLfY~r~~~~~~~  399 (404)
T 2ayn_A          387 VLLYGPRRVEIME  399 (404)
T ss_dssp             EEEEECC------
T ss_pred             EEEEEecCCCCCC
Confidence            9999988765444

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.91  E-value=6.9e-25  Score=203.89  Aligned_cols=115  Identities=27%  Similarity=0.492  Sum_probs=94.8

Q ss_pred             CccEEecCCceeeecceeeEeCcEEecCcccccccCchhhhHHhhhhhhcCCCCCCCCCCCCCCCCeeEEEeEEEEeeCC
Q psy14778          1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYELIGVTVHTGT   80 (210)
Q Consensus         1 KRF~fd~~t~~~~Ki~~~V~FP~~LDls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~Gs   80 (210)
                      |||.|+..++...|+++.|+||+.|||++|+...                           ....+..|+|+|||+|.|+
T Consensus       369 kRF~~~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~---------------------------~~~~~~~Y~L~avv~H~G~  421 (522)
T 2f1z_A          369 MRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKT---------------------------DPKDPANYILHAVLVHSGD  421 (522)
T ss_dssp             CCEEECSSSSCEEECCCCCBCCSEEECGGGBSSC---------------------------CTTSCCEEEEEEEEEEECS
T ss_pred             EeEEEcccCCcceEcCcEEeCCCeecchhhhccc---------------------------cCCCCcEEEEEEEEEeccc
Confidence            7999998888899999999999999999999753                           1134578999999999999


Q ss_pred             CCCceeEEEEee--CCcEEEecCCceeeeCHHHHHHHhcCCccccceeeeeeccCCCcceeeecCCCC
Q psy14778         81 ADGGHYYSFIRD--RDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQYIDATPPTSS  146 (210)
Q Consensus        81 ~~sGHY~ayvr~--~~~W~~fdDs~Vs~v~~~~V~~~~~Gg~~~~~~~~L~y~~~~~aY~lfy~r~~~  146 (210)
                      +++|||+||+|.  +++||+|||+.|+.+++++|+..+|||.....    -..+..+||||||+|.+.
T Consensus       422 ~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~----~~~~~~~aYiLfY~r~~~  485 (522)
T 2f1z_A          422 NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDL----SVRHCTNAYMLVYIRESK  485 (522)
T ss_dssp             SSCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC------------CEEEEEEEEEETTS
T ss_pred             CCCceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCCcccc----ccCcCCceEEEEEEECCc
Confidence            899999999996  88999999999999999999999999875421    122345688888888763

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}

Probab=99.90  E-value=4.1e-24  Score=189.46  Aligned_cols=99  Identities=27%  Similarity=0.563  Sum_probs=84.3

Q ss_pred             CccEEecCCceeeecceeeEeCc-EEecCcccccccCchhhhHHhhhhhhcCCCCCCCCCCCCCCCCeeEEEeEEEEeeC
Q psy14778          1 MRYTFNMVTMLKEKVNTHFSFPM-RLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYELIGVTVHTG   79 (210)
Q Consensus         1 KRF~fd~~t~~~~Ki~~~V~FP~-~LDls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G   79 (210)
                      |||.|+.  ....|+++.|.||. .|||++|+...                            ......|+|+|||+|.|
T Consensus       261 kRF~~~~--~~~~K~~~~v~fp~~~Ldl~~~~~~~----------------------------~~~~~~Y~L~avv~H~G  310 (367)
T 2y6e_A          261 KRFSYNR--YWRDKLDTVVEFPIRGLNMSEFVCNL----------------------------SARPYVYDLIAVSNHYG  310 (367)
T ss_dssp             ECEEECS--SCEEECCCCEECCSSCEECGGGBSCS----------------------------SSCCCEEEEEEEEEEEC
T ss_pred             eCeeecC--ccceecCceEEecCCcCChhhhccCC----------------------------CCCCceEEEEEEeecCC
Confidence            7999985  46789999999998 59999999753                            12457999999999999


Q ss_pred             CCCCceeEEEEee--CCcEEEecCCceeeeCHHHHHHHhcCCccccceeeeeeccCCCcceeeecCCCCCc
Q psy14778         80 TADGGHYYSFIRD--RDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQYIDATPPTSSRL  148 (210)
Q Consensus        80 s~~sGHY~ayvr~--~~~W~~fdDs~Vs~v~~~~V~~~~~Gg~~~~~~~~L~y~~~~~aY~lfy~r~~~~~  148 (210)
                      ++++|||+||+|.  +++||+|||+.|+.+++++|.+                   ..||||||+|.+...
T Consensus       311 ~~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~-------------------~~aYiLfY~r~~~~~  362 (367)
T 2y6e_A          311 AMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVT-------------------KAAYVLFYQRRDDEF  362 (367)
T ss_dssp             SSSSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSS-------------------TTEEEEEEEECCC--
T ss_pred             CCCCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCC-------------------CCcEEEEEEEcCCCC
Confidence            9999999999999  6899999999999999988853                   358999999887543

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A

Probab=99.89  E-value=1.6e-23  Score=183.02  Aligned_cols=95  Identities=21%  Similarity=0.413  Sum_probs=81.0

Q ss_pred             CccEEecCCceeeecceeeEeCcE-EecCcccccccCchhhhHHhhhhhhcCCCCCCCCCCCCCCCCeeEEEeEEEEeeC
Q psy14778          1 MRYTFNMVTMLKEKVNTHFSFPMR-LDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYELIGVTVHTG   79 (210)
Q Consensus         1 KRF~fd~~t~~~~Ki~~~V~FP~~-LDls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G   79 (210)
                      |||.++.  +...|+++.|.||.+ |||.+|+...                             .....|+|+|||+|.|
T Consensus       256 kRF~~~~--~~~~K~~~~v~fp~~~l~l~~~~~~~-----------------------------~~~~~Y~L~avv~H~G  304 (355)
T 3i3t_A          256 NRFSASR--GSIKKSSVGVDFPLQRLSLGDFASDK-----------------------------AGSPVYQLYALCNHSG  304 (355)
T ss_dssp             CCEECCS--SCCEECCCCCBCCSSCEECGGGBC---------------------------------CCEEEEEEEEEEEE
T ss_pred             hheecCC--CCceECCcceeCCccccCchhhccCC-----------------------------CCCcceEEEEEEEecC
Confidence            7998874  677899999999965 9999998643                             2346899999999999


Q ss_pred             CCCCceeEEEEeeCCcEEEecCCceeeeCHHHHHHHhcCCccccceeeeeeccCCCcceeeecCCC
Q psy14778         80 TADGGHYYSFIRDRDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQYIDATPPTS  145 (210)
Q Consensus        80 s~~sGHY~ayvr~~~~W~~fdDs~Vs~v~~~~V~~~~~Gg~~~~~~~~L~y~~~~~aY~lfy~r~~  145 (210)
                      ++++|||+||+|..+.|++|||+.|+++++++|.+                   .+||||||+|.+
T Consensus       305 ~~~~GHY~~~~~~~~~W~~~nD~~V~~v~~~~v~~-------------------~~aYiLfY~r~~  351 (355)
T 3i3t_A          305 SVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVAS-------------------SEGYVLFYQLMQ  351 (355)
T ss_dssp             ETTEEEEEEEEEETTEEEEEETTEEEEECHHHHHT-------------------SCCSEEEEEEC-
T ss_pred             CCCCCeEEEEEEcCCeEEEEcCCCcEECCHHHcCC-------------------CCcEEEEEEecc
Confidence            99999999999998899999999999999999975                   248999998875

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A

Probab=99.89  E-value=1.6e-23  Score=182.51  Aligned_cols=96  Identities=29%  Similarity=0.552  Sum_probs=82.4

Q ss_pred             CccEEecCCceeeecceeeEeCc-EEecCcccccccCchhhhHHhhhhhhcCCCCCCCCCCCCCCCCeeEEEeEEEEeeC
Q psy14778          1 MRYTFNMVTMLKEKVNTHFSFPM-RLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYELIGVTVHTG   79 (210)
Q Consensus         1 KRF~fd~~t~~~~Ki~~~V~FP~-~LDls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G   79 (210)
                      |||.++.  +...|+++.|+||. .|||++|+...                             .....|+|+|||+|.|
T Consensus       246 kRf~~~~--~~~~K~~~~v~fp~~~ldl~~~~~~~-----------------------------~~~~~Y~L~avv~H~G  294 (348)
T 3nhe_A          246 KRFSESR--IRTSKLTTFVNFPLRDLDLREFASEN-----------------------------TNHAVYNLYAVSNHSG  294 (348)
T ss_dssp             CCBCCCS--SCCCBCCCCEECCSSCEECGGGBCTT-----------------------------CCCCEEEEEEEEEEEE
T ss_pred             EcccccC--CceeecCcceeccCCcCCHhhhcCCC-----------------------------CCCCcEEEEEEEEccC
Confidence            7988764  67889999999996 59999998653                             2346899999999999


Q ss_pred             CCCCceeEEEEee--CCcEEEecCCceeeeCHHHHHHHhcCCccccceeeeeeccCCCcceeeecCCCC
Q psy14778         80 TADGGHYYSFIRD--RDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQYIDATPPTSS  146 (210)
Q Consensus        80 s~~sGHY~ayvr~--~~~W~~fdDs~Vs~v~~~~V~~~~~Gg~~~~~~~~L~y~~~~~aY~lfy~r~~~  146 (210)
                      ++.+|||+||+|.  +++|++|||+.|+++++++|.+                   .+||||||+|.+.
T Consensus       295 ~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~-------------------~~aY~LfY~r~~~  344 (348)
T 3nhe_A          295 TTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRT-------------------SDAYLLFYELASP  344 (348)
T ss_dssp             CSSCEEEEEEEECTTTCCEEEEETTEEEEECGGGTCC-------------------TTEEEEEEEECC-
T ss_pred             CCCCcccEEEEccCCCCcEEEEeCCCceECCHHHcCC-------------------CCceEEEEEecCC
Confidence            9999999999999  7899999999999999998843                   3589999988764

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A

Probab=99.88  E-value=4.2e-23  Score=185.87  Aligned_cols=96  Identities=32%  Similarity=0.614  Sum_probs=81.6

Q ss_pred             CccEEecCCceeeecceeeEeCc-EEecCcccccccCchhhhHHhhhhhhcCCCCCCCCCCCCCCCCeeEEEeEEEEeeC
Q psy14778          1 MRYTFNMVTMLKEKVNTHFSFPM-RLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYELIGVTVHTG   79 (210)
Q Consensus         1 KRF~fd~~t~~~~Ki~~~V~FP~-~LDls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G   79 (210)
                      |||.|+.  ....|+++.|.||. .|||++|+..+                            ......|+|+|||+|.|
T Consensus       298 kRF~~~~--~~~~K~~~~v~fp~~~Ldl~~~~~~~----------------------------~~~~~~Y~L~avv~H~G  347 (396)
T 2gfo_A          298 KRFSYDG--RWKQKLQTSVDFPLENLDLSQYVIGP----------------------------KNNLKKYNLFSVSNHYG  347 (396)
T ss_dssp             CCEEECS--SSEEECCCEEECCSSCBCCGGGBCSC----------------------------CSSCCCBEEEEEEEEES
T ss_pred             cceeccC--ccceecCceEecchhhccccccccCC----------------------------CCCCceEEEEEEEEecC
Confidence            7999985  35689999999996 59999999753                            12346899999999999


Q ss_pred             CCCCceeEEEEee--CCcEEEecCCceeeeCHHHHHHHhcCCccccceeeeeeccCCCcceeeecCCC
Q psy14778         80 TADGGHYYSFIRD--RDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQYIDATPPTS  145 (210)
Q Consensus        80 s~~sGHY~ayvr~--~~~W~~fdDs~Vs~v~~~~V~~~~~Gg~~~~~~~~L~y~~~~~aY~lfy~r~~  145 (210)
                      ++++|||+||+|.  +++||.|||+.|+.+++++|..                   ..||||||+|.+
T Consensus       348 ~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~-------------------~~aYiLfY~r~~  396 (396)
T 2gfo_A          348 GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKS-------------------SAAYILFYTSLG  396 (396)
T ss_dssp             CTTTCEEEEEEEETTTTEEEEEETTEEEECCHHHHSC-------------------TTEEEEEEECC-
T ss_pred             CCCCCceEEEEcCCCCCCEEEEeCCCeEECCHHHcCC-------------------CCceEEEEEEcC
Confidence            9999999999998  5899999999999999998853                   358888888753

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A

Probab=99.88  E-value=6.3e-23  Score=187.95  Aligned_cols=105  Identities=24%  Similarity=0.448  Sum_probs=86.5

Q ss_pred             CccEEecCCceeeecceeeEeCcEEecCcccccccCchhhhHHhhhhhhcCCCCCCCCCCCCCCCCeeEEEeEEEEeeCC
Q psy14778          1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYELIGVTVHTGT   80 (210)
Q Consensus         1 KRF~fd~~t~~~~Ki~~~V~FP~~LDls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~Gs   80 (210)
                      |||.|+. ++...|+++.|.||++|||++|+.......                   ...........|+|+|||+|.|+
T Consensus       368 kRF~~~~-~~~~~K~~~~V~fP~~Ldl~~~~~~~~~~~-------------------~~~~~~~~~~~Y~L~avv~H~G~  427 (476)
T 3mhs_A          368 KRFEHLL-NGSNRKLDDFIEFPTYLNMKNYCSTKEKDK-------------------HSENGKVPDIIYELIGIVSHKGT  427 (476)
T ss_dssp             CCEEECT-TSCEEECCCCCBCCSEEECGGGBSCCBCCC---------------------CCCBCCCEEEEEEEEEEEEEC
T ss_pred             eeccccC-CCCeEECCEEEcCCCeeechhhcCcccccc-------------------cccccCCCCCcEEEEEEEEeCCC
Confidence            7999986 467889999999999999999998652110                   00112345689999999999999


Q ss_pred             CCCceeEEEEee-CCcEEEecCCceeeeCHHHHHHHhcCCccccceeeeeeccCCCcceeeecCC
Q psy14778         81 ADGGHYYSFIRD-RDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQYIDATPPT  144 (210)
Q Consensus        81 ~~sGHY~ayvr~-~~~W~~fdDs~Vs~v~~~~V~~~~~Gg~~~~~~~~L~y~~~~~aY~lfy~r~  144 (210)
                      +++|||+||+|. +++||+|||+.|+++++++|.+                   ..||||||+|.
T Consensus       428 ~~~GHY~a~vr~~~~~W~~fnD~~V~~v~~~~v~~-------------------~~aYiLfY~r~  473 (476)
T 3mhs_A          428 VNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLK-------------------EQAYLLFYTIR  473 (476)
T ss_dssp             SSSEEEEEEEECTTSCEEEEETTEEEEECHHHHTT-------------------SCEEEEEEEEE
T ss_pred             CCCCceEEEEECCCCcEEEEeCCceEECCHHHhcc-------------------CCcEEEEEEEe
Confidence            999999999998 8899999999999999999975                   24788888765

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=99.82  E-value=1.5e-20  Score=184.30  Aligned_cols=62  Identities=23%  Similarity=0.428  Sum_probs=52.6

Q ss_pred             CCCCeeEEEeEEEEeeC-CCCCceeEEEEeeCCcEEEecCCceeeeCHHHHHHHhcCCccccceeeeeeccCCCcceeee
Q psy14778         63 FNENYEYELIGVTVHTG-TADGGHYYSFIRDRDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQYIDAT  141 (210)
Q Consensus        63 ~~~~~~Y~L~aVV~H~G-s~~sGHY~ayvr~~~~W~~fdDs~Vs~v~~~~V~~~~~Gg~~~~~~~~L~y~~~~~aY~lfy  141 (210)
                      ...+..|+|+|||+|.| ++++|||+||+|.+++|++|||+.|+.+.+  .                   ....||||||
T Consensus       791 ~~~~~~Y~L~avi~H~G~~~~~GHY~~~~~~~~~W~~~nD~~V~~~~~--~-------------------~~~~aYilfY  849 (854)
T 3ihp_A          791 RDGPGKYQLFAFISHMGTSTMCGHYVCHIKKEGRWVIYNDQKVCASEK--P-------------------PKDLGYIYFY  849 (854)
T ss_dssp             CCCCSEEEEEEEEEEESSCSSCCEEEEEEEETTEEEEEETTEEEECSS--C-------------------CTTSCSEEEE
T ss_pred             CCCCceEEEEEEEEeecCCCCCcCeEEEEEeCCEEEEEECCeeEEccc--c-------------------CCCcceEEEE
Confidence            34556899999999999 888999999999999999999999999732  1                   2236999999


Q ss_pred             cCCC
Q psy14778        142 PPTS  145 (210)
Q Consensus       142 ~r~~  145 (210)
                      +|.+
T Consensus       850 ~R~~  853 (854)
T 3ihp_A          850 QRVA  853 (854)
T ss_dssp             EECC
T ss_pred             EecC
Confidence            9876

>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}

Probab=99.05  E-value=1.7e-10  Score=103.23  Aligned_cols=88  Identities=14%  Similarity=0.156  Sum_probs=54.6

Q ss_pred             ceeeecceeeEeCcEEecCcccccccCchhhhH----------------Hh-------hh--hh------hcCCCCC--C
Q psy14778         10 MLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQE----------------EK-------LK--SE------ARGEGEV--G   56 (210)
Q Consensus        10 ~~~~Ki~~~V~FP~~LDls~~~~~~~~~~~~~~----------------~~-------~~--~~------~~~~~~~--~   56 (210)
                      +...||-..|.||++||+.++|+++...-....                ..       ..  .+      .......  .
T Consensus       178 gKkaKIlrkV~fp~eLDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (374)
T 2vhf_A          178 GKDFKLFKKIFPSLELNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNHKYNPVS  257 (374)
T ss_dssp             SSSSSCCCCCBCCSEECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECHHHHHHHTTSGGGTTCCCEECC
T ss_pred             CccccccCCCCCcchhccHhhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhhhhcccccccc
Confidence            567799999999999999999998754210000                00       00  00      0000000  0


Q ss_pred             C----C---CCCCCCCCeeEEEeEEEEeeCCCCCceeEEEEee---CCcEEEecC
Q psy14778         57 G----E---GGEDFNENYEYELIGVTVHTGTADGGHYYSFIRD---RDKWLLFND  101 (210)
Q Consensus        57 ~----~---~~~~~~~~~~Y~L~aVV~H~Gs~~sGHY~ayvr~---~~~W~~fdD  101 (210)
                      .    .   .+........|+|+|||+    +++|||+||||.   +++|+.||-
T Consensus       258 ~~~~~~~~~~~~g~~psg~yeL~aVlt----adsgHYvafVK~~~~d~~W~~FDs  308 (374)
T 2vhf_A          258 LPKDLPDWDWRHGCIPCQNMELFAVLC----IETSHYVAFVKYGKDDSAWLFFDS  308 (374)
T ss_dssp             C----------------CCEEEEEEEE----EETTEEEEEEECSSSTTCEEEEET
T ss_pred             cCccccccccccCCCCceeEEEEEEEE----ccCCceEEEEEecCCCCCeEEEec
Confidence            0    0   123344558999999999    899999999998   799999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	210
d2ayna1	383	d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy	2e-19
d1vjva_	397	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	2e-14
d2gfoa1	348	d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h	2e-12
d2hd5a1	336	d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy	3e-12
d1nbfa_	347	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	1e-08

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.9 bits (203), Expect = 2e-19
 Identities = 27/143 (18%), Positives = 48/143 (33%), Gaps = 23/143 (16%)

Query: 1   MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGG 60
           +R+ +     +  KV     FP+ LDM       L  +         +   +        
Sbjct: 229 VRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNT 288

Query: 61  EDF---------------------NENYEYELIGVTVHTG-TADGGHYYSFIRDR-DKWL 97
            D                      N    Y+L  V  H G ++  GHY S+++ + D+W+
Sbjct: 289 SDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWI 348

Query: 98  LFNDAEVKHFDSSQLAAECFGGE 120
            F+D +V       +     GG+
Sbjct: 349 KFDDDKVSIVTPEDILRLSGGGD 371

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.7 bits (166), Expect = 2e-14
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 64  NENYEYELIGVTVHTG-TADGGHYYSFIRDR---DKWLLFNDAEVKHFDSSQLAAECFGG 119
           N +  Y LIGV  H G  ++ GHY +FIRD    +KW  FND +V   +  ++ +   GG
Sbjct: 323 NPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGG 382

Query: 120 EMT 122
           E  
Sbjct: 383 ESD 385

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (152), Expect = 2e-12
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 61  EDFNENYEYELIGVTVHTGTADGGHYYSFIRD--RDKWLLFNDAEVKHFDSSQL 112
              N   +Y L  V+ H G  DGGHY ++ ++  R +W  F+D EV     S +
Sbjct: 282 GPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSV 335

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (149), Expect = 3e-12
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 64  NENYEYELIGVTVHTGTADGGHYYSFIRDR--DKWLLFNDAEVKHFDSSQL 112
             +  Y L  V+ H+GT  GGHY ++ R     +W  FND+ V    SSQ+
Sbjct: 273 TNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQV 323

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 1e-08
 Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 29/127 (22%)

Query: 1   MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGG 60
           MR+ ++  T    K+N  F FP +L +  +++K                           
Sbjct: 200 MRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKD---------------------- 237

Query: 61  EDFNENYEYELIGVTVHTGTADGGHYYSFIRDR--DKWLLFNDAEVKHFDSSQLAAECFG 118
                   Y L  V VH+G   GGHY  ++  +   KW  F+D  V      +     +G
Sbjct: 238 -----PANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYG 292

Query: 119 GEMTVLN 125
           G    L+
Sbjct: 293 GHDDDLS 299

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d1nbfa_	347	Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU	99.94
d1vjva_	397	Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y	99.91
d2ayna1	383	Ubiquitin carboxyl-terminal hydrolase 14 {Human (H	99.91
d2hd5a1	336	Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum	99.82
d2gfoa1	348	Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho	99.82

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.4e-27  Score=207.59  Aligned_cols=114  Identities=27%  Similarity=0.499  Sum_probs=99.1

Q ss_pred             CccEEecCCceeeecceeeEeCcEEecCcccccccCchhhhHHhhhhhhcCCCCCCCCCCCCCCCCeeEEEeEEEEeeCC
Q psy14778          1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYELIGVTVHTGT   80 (210)
Q Consensus         1 KRF~fd~~t~~~~Ki~~~V~FP~~LDls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~Gs   80 (210)
                      |||.|+..++...|+++.|.||+.|||++|+...                           .......|+|+|||+|.|+
T Consensus       200 ~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~---------------------------~~~~~~~Y~L~~vI~H~G~  252 (347)
T d1nbfa_         200 MRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKT---------------------------DPKDPANYILHAVLVHSGD  252 (347)
T ss_dssp             ECEEEETTTTEEEECCCCCBCCSEEECGGGBSSC---------------------------CTTSCCEEEEEEEEEEEEE
T ss_pred             eeeeeccccCcccccCceEeeeeeeccccccccc---------------------------cccCccceeeEEEEEecCC
Confidence            6999999999999999999999999999999764                           1234578999999999997


Q ss_pred             CCCceeEEEEee--CCcEEEecCCceeeeCHHHHHHHhcCCccccceeeeeeccCCCcceeeecCCC
Q psy14778         81 ADGGHYYSFIRD--RDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQYIDATPPTS  145 (210)
Q Consensus        81 ~~sGHY~ayvr~--~~~W~~fdDs~Vs~v~~~~V~~~~~Gg~~~~~~~~L~y~~~~~aY~lfy~r~~  145 (210)
                      +++|||+||+|.  +++|+.|||+.|+.+++++|+..++||.+....    .....+||||||+|.+
T Consensus       253 ~~~GHY~~~~~~~~~~~W~~fnD~~V~~v~~~ev~~~~~g~~~~~~~----~~~~~~aYiLfY~r~~  315 (347)
T d1nbfa_         253 NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLS----VRHCTNAYMLVYIRES  315 (347)
T ss_dssp             TTEEEEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCCCSCCS----TTTTEEEEEEEEEEGG
T ss_pred             CCCCEEEEeeecCCCCEEEEEECCceEECCHHHHHHhhcCCCccccc----cCCCCCEEEEEEEecC
Confidence            799999999997  679999999999999999999999998875322    2345679999999876

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2.1e-24  Score=185.75  Aligned_cols=133  Identities=26%  Similarity=0.426  Sum_probs=97.4

Q ss_pred             CccEEecCCceeeecceeeEeCcEEecCcccccccCchhhhHHh-------hhhhh------------------------
Q psy14778          1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEK-------LKSEA------------------------   49 (210)
Q Consensus         1 KRF~fd~~t~~~~Ki~~~V~FP~~LDls~~~~~~~~~~~~~~~~-------~~~~~------------------------   49 (210)
                      +||.++..+....|++..|.||.+||+.+++.............       .....                        
T Consensus       213 ~R~~~~~~~~~~~k~~~~~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (397)
T d1vjva_         213 VRFFWKRSTNKKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQY  292 (397)
T ss_dssp             CCEEEETTTTEEEECCCCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHH
T ss_pred             eeeeeccccccccccCceeecCcEEecccccchhhhhhhhhhhHhhhhhhhccchHHHHHhhhccCCccccccccchhhc
Confidence            69999999999999999999999999999987643221110000       00000                        


Q ss_pred             ----------------cCCCCCCCCCCCCCCCCeeEEEeEEEEeeC-CCCCceeEEEEee---CCcEEEecCCceeeeCH
Q psy14778         50 ----------------RGEGEVGGEGGEDFNENYEYELIGVTVHTG-TADGGHYYSFIRD---RDKWLLFNDAEVKHFDS  109 (210)
Q Consensus        50 ----------------~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G-s~~sGHY~ayvr~---~~~W~~fdDs~Vs~v~~  109 (210)
                                      ...................|+|+|||+|.| ++++|||+||+|+   +++|++|||+.|++|++
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~ay~r~~~~~~~W~~~nD~~V~~v~~  372 (397)
T d1vjva_         293 ETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEK  372 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECH
T ss_pred             cchhcccchhccchhhhccccccccccccCCCCCCEEEEEEEEEecCCCCCcCeEEEEECCCCCCEEEEEECCCCEECCH
Confidence                            000001112223344567899999999999 7899999999997   57899999999999999


Q ss_pred             HHHHHHhcCCccccceeeeeeccCCCcceeeecCCC
Q psy14778        110 SQLAAECFGGEMTVLNACLKLLSTAPQYIDATPPTS  145 (210)
Q Consensus       110 ~~V~~~~~Gg~~~~~~~~L~y~~~~~aY~lfy~r~~  145 (210)
                      ++|++..+||++            .+||||||+|.+
T Consensus       373 ~~V~~~~~~~~~------------~~aYlLfY~r~~  396 (397)
T d1vjva_         373 EKIESLAGGGES------------DSALILMYKGFG  396 (397)
T ss_dssp             HHHHGGGCCTTS------------CEEEEEEEEETT
T ss_pred             HHHHHhhCCCCC------------CeEEEEEEEecC
Confidence            999998888765            248888888865

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.8e-25  Score=189.29  Aligned_cols=132  Identities=21%  Similarity=0.343  Sum_probs=94.7

Q ss_pred             CccEEecCCceeeecceeeEeCcEEecCcccccccCchhhhHHhhh---------hhhcC------------CCCCCCCC
Q psy14778          1 MRYTFNMVTMLKEKVNTHFSFPMRLDMSGYVEKHLMPQHYQEEKLK---------SEARG------------EGEVGGEG   59 (210)
Q Consensus         1 KRF~fd~~t~~~~Ki~~~V~FP~~LDls~~~~~~~~~~~~~~~~~~---------~~~~~------------~~~~~~~~   59 (210)
                      +||.|+..+....|+.+.|+||.+|||.+|+.+.............         .....            ........
T Consensus       229 ~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (383)
T d2ayna1         229 VRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFAD  308 (383)
T ss_dssp             ECBCCCCSSSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC----------------------CCCCCSC
T ss_pred             cceeecccCcceeecCcEEccCCeeechhhcchhhhccccchhhhhhhhhhhhhccccCccccccccccccccccccccc
Confidence            5999999888889999999999999999999754321110000000         00000            00001122


Q ss_pred             CCCCCCCeeEEEeEEEEeeC-CCCCceeEEEEee-CCcEEEecCCceeeeCHHHHHHHhcCCccccceeeeeeccCCCcc
Q psy14778         60 GEDFNENYEYELIGVTVHTG-TADGGHYYSFIRD-RDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQY  137 (210)
Q Consensus        60 ~~~~~~~~~Y~L~aVV~H~G-s~~sGHY~ayvr~-~~~W~~fdDs~Vs~v~~~~V~~~~~Gg~~~~~~~~L~y~~~~~aY  137 (210)
                      .........|+|+|||+|.| ++.+|||+||+|. +++|++|||+.|++|++++|++..+|+..            ..||
T Consensus       309 ~~~~~~~~~Y~L~avi~H~G~s~~~GHY~a~vk~~~~~W~~~nD~~V~~v~~~~v~~~~~~~~~------------~~aY  376 (383)
T d2ayna1         309 DIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDW------------HIAY  376 (383)
T ss_dssp             TTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGSSSSS------------CEEE
T ss_pred             cccCCCCceEEEEEEEEEECCCCCCCCcEEEEECCCCeEEEEECCceEEeCHHHHHHhhCCCCC------------CceE
Confidence            23345567899999999999 8999999999997 88999999999999999999987766443            3478


Q ss_pred             eeeecCC
Q psy14778        138 IDATPPT  144 (210)
Q Consensus       138 ~lfy~r~  144 (210)
                      ||||.|+
T Consensus       377 iLfY~r~  383 (383)
T d2ayna1         377 VLLYGPR  383 (383)
T ss_dssp             EEEEECC
T ss_pred             EEEEEEC
Confidence            8888874

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3e-21  Score=162.57  Aligned_cols=93  Identities=30%  Similarity=0.576  Sum_probs=74.7

Q ss_pred             CccEEecCCceeeecceeeEeCcE-EecCcccccccCchhhhHHhhhhhhcCCCCCCCCCCCCCCCCeeEEEeEEEEeeC
Q psy14778          1 MRYTFNMVTMLKEKVNTHFSFPMR-LDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYELIGVTVHTG   79 (210)
Q Consensus         1 KRF~fd~~t~~~~Ki~~~V~FP~~-LDls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G   79 (210)
                      +||.++.  ....|..+.|.|+.. |||++++...                             .....|+|.|||+|.|
T Consensus       240 ~r~~~~~--~~~~~~~~~v~~~~~~~dl~~~~~~~-----------------------------~~~~~Y~L~~vi~H~G  288 (336)
T d2hd5a1         240 KRFSESR--IRTSKLTTFVNFPLRDLDLREFASEN-----------------------------TNHAVYNLYAVSNHSG  288 (336)
T ss_dssp             ECEECCS--SCCEECCCCCBCCSSCEECGGGBSSS-----------------------------SCCCEEEEEEEEEEEE
T ss_pred             hhhhhcc--ccccccceeEeeccccccccccccCC-----------------------------CCCCeEeEEEEEEEeC
Confidence            3666654  334466677778755 9998887653                             3456899999999999


Q ss_pred             CCCCceeEEEEee--CCcEEEecCCceeeeCHHHHHHHhcCCccccceeeeeeccCCCcceeeecC
Q psy14778         80 TADGGHYYSFIRD--RDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQYIDATPP  143 (210)
Q Consensus        80 s~~sGHY~ayvr~--~~~W~~fdDs~Vs~v~~~~V~~~~~Gg~~~~~~~~L~y~~~~~aY~lfy~r  143 (210)
                      ++++|||+||+|+  +++|+.|||+.|+++++++|..                   .+||||||+|
T Consensus       289 ~~~~GHY~~~ik~~~~~~W~~~nD~~V~~v~~~~v~~-------------------~~aYiL~Y~r  335 (336)
T d2hd5a1         289 TTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRT-------------------SDAYLLFYEL  335 (336)
T ss_dssp             CSSCEEEEEEEECTTTCCEEEEETTEEEEECGGGSCC-------------------TTEEEEEEEE
T ss_pred             CCCCceEEEEEEcCCCCeEEEEECCceeECCHHHhcc-------------------CCCEEEEEEc
Confidence            9999999999997  6899999999999999998853                   2488888886

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.2e-20  Score=160.44  Aligned_cols=94  Identities=33%  Similarity=0.631  Sum_probs=76.7

Q ss_pred             CccEEecCCceeeecceeeEeCcE-EecCcccccccCchhhhHHhhhhhhcCCCCCCCCCCCCCCCCeeEEEeEEEEeeC
Q psy14778          1 MRYTFNMVTMLKEKVNTHFSFPMR-LDMSGYVEKHLMPQHYQEEKLKSEARGEGEVGGEGGEDFNENYEYELIGVTVHTG   79 (210)
Q Consensus         1 KRF~fd~~t~~~~Ki~~~V~FP~~-LDls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G   79 (210)
                      +||.++.  ....+..+.+.||.. +|+..++...                            ......|+|.|||+|.|
T Consensus       251 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~Y~L~avi~H~G  300 (348)
T d2gfoa1         251 KRFSYDG--RWKQKLQTSVDFPLENLDLSQYVIGP----------------------------KNNLKKYNLFSVSNHYG  300 (348)
T ss_dssp             CCEEECS--SSEEECCCEEECCSSCBCCGGGBCSC----------------------------CSSCCCBEEEEEEEEES
T ss_pred             eeeeccC--ccceeeccccccccccccccceecCC----------------------------CCCCCCEEEEEEEEEeC
Confidence            4677765  345577788888876 8887777543                            23456899999999999


Q ss_pred             CCCCceeEEEEee--CCcEEEecCCceeeeCHHHHHHHhcCCccccceeeeeeccCCCcceeeecC
Q psy14778         80 TADGGHYYSFIRD--RDKWLLFNDAEVKHFDSSQLAAECFGGEMTVLNACLKLLSTAPQYIDATPP  143 (210)
Q Consensus        80 s~~sGHY~ayvr~--~~~W~~fdDs~Vs~v~~~~V~~~~~Gg~~~~~~~~L~y~~~~~aY~lfy~r  143 (210)
                      ++++|||+||+|+  +++|+.|||+.|+++++++|.+                   .+||||||+|
T Consensus       301 ~~~~GHY~~~ik~~~~~~W~~~nD~~V~~v~~~~v~~-------------------~~aYlLfY~r  347 (348)
T d2gfoa1         301 GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKS-------------------SAAYILFYTS  347 (348)
T ss_dssp             CTTTCEEEEEEEETTTTEEEEEETTEEEECCHHHHSC-------------------TTEEEEEEEC
T ss_pred             CCCCceEEEEEEeCCcCeEEEEECCcCeECCHHHccC-------------------CCcEEEEEEe
Confidence            9999999999997  7899999999999999999964                   2488888887