Psyllid ID: psy14801

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400----
Protein Sequence
CQEKSLYSNSARNSPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEELEEMIHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEELEEMI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEccccccccccEEEEEEccccccccHHHHHHHHHHHHHHHccccccccEEEcccccHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHccEEEEccccccccccccHHHHHHHHHHHccccEEcccccccccHHHHHHccHHHHHHHHcccccEEEEccccccccccHHHHHHHHccccEEEEEccccccccccccccccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHHHccEEcHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccHHHHHHccccccHHHHHHHHHccccHHHHHHHHHcccccccEEEEEcccccccccccccHHHHHHccccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHccccEEEEcccccccccEEEEEEcccccccEcHHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHcccEEEEEcHHHcccccHHHHHHHHHHHcccccEEEcccccccHHHHHHHHcHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHHccccEEEEEcccccEEEEEcccccccccccccccccccccccccccccHHHccEEEEEcHHHHHHHHHHHHHHHcccEcHHHHHHHHHHHHHHHcccccccEEEEEcEEHHHcccHHccHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHcHHHHHHccccccHHHHcccc
Coil and Loop (DISEMBL)
cqekslysnsarnspftptvpgkvpllpqskqgsillpttdakcefmnptgslkDRAAWRMIEDaetagvlkpgytivepssgntgIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIrtqndksydhpegmiAGAHRIASQMKNAVVldqfrnpnnplshyetTAEEILRDTGGKVDMIVLgcgtggtasgigrkikekcpscklvgadpfgsilaqpqslndvpenqisynevegigysfaattldrnvidqwgkcgdkdTFLMARRLIKSEgllvggssgTAMHVACQAakslrpdqrCVVILADGVRNYLTKFISDEWMIEKGFLDEAEELEEMIHSGTAMHVACQAakslrpdqrCVVILADGVRNYLTKFISDEWMIEKGFLDEAEELEEMI
Flexible Loop (DISEMBL)
cqekslysnsarnspftptvpgkvpllpqsKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAetagvlkpgytivepssgntGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIrtqndksydhPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTggtasgigrkikEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAakslrpdqrCVVILADGVRNYLtkfisdewmIEKGFLDEAEELEEMIHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLtkfisdewmiEKGFLDEAEELEEMI
Low Complexity Region (SEG)
CQEKSLYSNSARNSPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYkmvvvmpmkmskekvYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLgcgtggtasgigRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEELEEMIHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEELEEMI
Disordered region (IsUnstruct)
***********************************LLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQ*********GMIAGAHRIASQMKNAVVLDQFRN****LSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEELEEMIHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFL**********
Disordered Region (DISOPRED)
***********RNSPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSL*****NQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEELEEMIHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEA*******
Disordered Region (DISEMBL)
************NSPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEELEEMIHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEELEEMI
Disordered Region (DISPRO)
C*EKSLYSNSARNSPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEELEEMIHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDE********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
CQEKSLYSNSARNSPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEELEEMIHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEELEEMI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	404	2.2.26 [Sep-21-2011]
Q58H57	551	Cystathionine beta-syntha	N/A	N/A	0.740	0.542	0.576	1e-102
P32232	561	Cystathionine beta-syntha	yes	N/A	0.725	0.522	0.594	1e-101
Q91WT9	561	Cystathionine beta-syntha	yes	N/A	0.725	0.522	0.591	1e-101
P35520	551	Cystathionine beta-syntha	yes	N/A	0.737	0.540	0.572	1e-99
Q9N0V7	551	Cystathionine beta-syntha	yes	N/A	0.730	0.535	0.577	9e-95
P46794	498	Cystathionine beta-syntha	yes	N/A	0.801	0.650	0.540	2e-93
P32582	507	Cystathionine beta-syntha	yes	N/A	0.774	0.617	0.458	8e-75
Q7D8W0	464	Putative cystathionine be	yes	N/A	0.712	0.620	0.432	1e-50
P0A534	310	O-acetylserine sulfhydryl	no	N/A	0.710	0.925	0.409	4e-47
P0A535	310	O-acetylserine sulfhydryl	no	N/A	0.710	0.925	0.409	4e-47

>sp|Q58H57|CBS_MACFA Cystathionine beta-synthase OS=Macaca fascicularis GN=CBS PE=2 SV=3

 Score =  370 bits (951), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/302 (57%), Positives = 228/302 (75%), Gaps = 3/302 (0%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
           AKCEF N  GS+KDR + RMIEDAE AG LKPG TI+EP+SGNTGIGLA+ AA++GY+ +
Sbjct: 107 AKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTIIEPTSGNTGIGLALTAAVRGYRCI 166

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
           +VMP KMS EKV  ++ALGA+I+RT  +  +D PE  +  A R+ +++ N+ +LDQ+RN 
Sbjct: 167 IVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNA 226

Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221
           +NPL+HY+TTA+EILR   GK+DM+V   GTGGT +GI RK+KEKCP C+++G DP GSI
Sbjct: 227 SNPLAHYDTTADEILRQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSI 286

Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
           LA+P+ LN     Q +Y EVEGIGY F  T LDR V+D+W K  D++ F  AR LI  EG
Sbjct: 287 LAEPEELNQT--EQTTY-EVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEG 343

Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEEL 341
           LL GGS+G+ M VA +AA+ L+  QRCVVIL D VRNY+TKF+SD WM++KGFL E + +
Sbjct: 344 LLCGGSAGSTMAVAVKAAQELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKEEDLM 403

Query: 342 EE 343
           E+
Sbjct: 404 EK 405

Only known pyridoxal phosphate-dependent enzyme that contains heme. Important regulator of hydrogen sulfide, especially in the brain, utilizing cysteine instead of serine to catalyze the formation of hydrogen sulfide. Hydrogen sulfide is a gastratransmitter with signaling and cytoprotective effects such as acting as a neuromodulator in the brain to protect neurons against hypoxic injury.
Macaca fascicularis (taxid: 9541)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 2EC: 2

>sp|P32232|CBS_RAT Cystathionine beta-synthase OS=Rattus norvegicus GN=Cbs PE=1 SV=3

 Score =  370 bits (949), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/296 (59%), Positives = 225/296 (76%), Gaps = 3/296 (1%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
           AKCEF N  GS+KDR + RMIEDAE AG LKPG TI+EP+SGNTGIGLA+ AA+KGY+ +
Sbjct: 104 AKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTIIEPTSGNTGIGLALAAAVKGYRCI 163

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
           +VMP KMS EKV  ++ALGA+I+RT  +  +D PE  +  A R+ +++ N+ +LDQ+RN 
Sbjct: 164 IVMPEKMSMEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNA 223

Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221
           +NPL+HY+ TAEEIL+   GKVDM+V   GTGGT +GI RK+KEKCP CK++G DP GSI
Sbjct: 224 SNPLAHYDDTAEEILQQCDGKVDMLVASAGTGGTITGIARKLKEKCPGCKIIGVDPEGSI 283

Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
           LA+P+ LN     Q +Y EVEGIGY F  T LDR V+D+W K  D D+F  AR LI  EG
Sbjct: 284 LAEPEELNQT--EQTAY-EVEGIGYDFIPTVLDRAVVDRWFKSNDDDSFAFARMLISQEG 340

Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDE 337
           LL GGSSG+AM VA +AA+ L+  QRCVVIL D VRNY++KF+SD+WM++KGF+ E
Sbjct: 341 LLCGGSSGSAMAVAVKAAQELKEGQRCVVILPDSVRNYMSKFLSDKWMLQKGFMKE 396

Only known pyridoxal phosphate-dependent enzyme that contains heme. Important regulator of hydrogen sulfide, especially in the brain, utilizing cysteine instead of serine to catalyze the formation of hydrogen sulfide. Hydrogen sulfide is a gastratransmitter with signaling and cytoprotective effects such as acting as a neuromodulator in the brain to protect neurons against hypoxic injury.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q91WT9|CBS_MOUSE Cystathionine beta-synthase OS=Mus musculus GN=Cbs PE=2 SV=3

 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/296 (59%), Positives = 226/296 (76%), Gaps = 3/296 (1%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
           AKCEF N  GS+KDR + RMIEDAE AG LKPG TI+EP+SGNTGIGLA+ AA+KGY+ +
Sbjct: 104 AKCEFFNAGGSVKDRISLRMIEDAERAGNLKPGDTIIEPTSGNTGIGLALAAAVKGYRCI 163

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
           +VMP KMS EKV  ++ALGA+I+RT  +  +D PE  +  A R+ +++ N+ +LDQ+RN 
Sbjct: 164 IVMPEKMSMEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNA 223

Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221
           +NPL+HY+ TAEEIL+   GK+DM+V   GTGGT +GI RK+KEKCP CK++G DP GSI
Sbjct: 224 SNPLAHYDDTAEEILQQCDGKLDMLVASAGTGGTITGIARKLKEKCPGCKIIGVDPEGSI 283

Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
           LA+P+ LN     Q +Y EVEGIGY F  T LDR V+D+W K  D+D+F  AR LI  EG
Sbjct: 284 LAEPEELNQT--EQTAY-EVEGIGYDFIPTVLDRAVVDKWFKSNDEDSFAFARMLIAQEG 340

Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDE 337
           LL GGSSG+AM VA +AA+ L+  QRCVVIL D VRNY++KF+SD+WM++KGF+ E
Sbjct: 341 LLCGGSSGSAMAVAVKAARELQEGQRCVVILPDSVRNYMSKFLSDKWMLQKGFMKE 396

Only known pyridoxal phosphate-dependent enzyme that contains heme. Important regulator of hydrogen sulfide, especially in the brain, utilizing cysteine instead of serine to catalyze the formation of hydrogen sulfide. Hydrogen sulfide is a gastratransmitter with signaling and cytoprotective effects such as acting as a neuromodulator in the brain to protect neurons against hypoxic injury.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|P35520|CBS_HUMAN Cystathionine beta-synthase OS=Homo sapiens GN=CBS PE=1 SV=2

 Score =  363 bits (932), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 173/302 (57%), Positives = 227/302 (75%), Gaps = 4/302 (1%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
           AKCEF N  GS+KDR + RMIEDAE  G LKPG TI+EP+SGNTGIGLA+ AA++GY+ +
Sbjct: 107 AKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCI 166

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
           +VMP KMS EKV  ++ALGA+I+RT  +  +D PE  +  A R+ +++ N+ +LDQ+RN 
Sbjct: 167 IVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNA 226

Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221
           +NPL+HY+TTA+EIL+   GK+DM+V   GTGGT +GI RK+KEKCP C+++G DP GSI
Sbjct: 227 SNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSI 286

Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
           LA+P+ LN     Q +Y EVEGIGY F  T LDR V+D+W K  D++ F  AR LI  EG
Sbjct: 287 LAEPEELNQT--EQTTY-EVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEG 343

Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEEL 341
           LL GGS+G+ + VA +AA+ L+  QRCVVIL D VRNY+TKF+SD WM++KGFL E E+L
Sbjct: 344 LLCGGSAGSTVAVAVKAAQELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKE-EDL 402

Query: 342 EE 343
            E
Sbjct: 403 TE 404

Only known pyridoxal phosphate-dependent enzyme that contains heme. Important regulator of hydrogen sulfide, especially in the brain, utilizing cysteine instead of serine to catalyze the formation of hydrogen sulfide. Hydrogen sulfide is a gastratransmitter with signaling and cytoprotective effects such as acting as a neuromodulator in the brain to protect neurons against hypoxic injury.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q9N0V7|CBS_RABIT Cystathionine beta-synthase OS=Oryctolagus cuniculus GN=CBS PE=2 SV=3

 Score =  347 bits (890), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 172/298 (57%), Positives = 227/298 (76%), Gaps = 3/298 (1%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
           AKCEF N  GS+KDR + RMIEDAE AG L+PG TI+EP+SGNTGIGLA+ AA+KGY+ +
Sbjct: 107 AKCEFFNAGGSVKDRISLRMIEDAERAGTLRPGDTIIEPTSGNTGIGLALAAAVKGYRCI 166

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
           +VMP KMS EKV  ++ALGA+I+RT  +  +D PE  +  A R+  ++ N+ +LDQ+RN 
Sbjct: 167 IVMPEKMSLEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKQEIPNSHILDQYRNA 226

Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221
           +NPL+HY+TTAEEIL+   GK+DM+V   GTGGT +GI RK+KEKCP C+++G DP GSI
Sbjct: 227 SNPLAHYDTTAEEILQQCDGKLDMLVASAGTGGTITGIARKLKEKCPGCQIIGVDPEGSI 286

Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
           LA+P+ LN   + +++  EVEGIGY F  T LDR V+D+W K  DK+ F  AR LI  EG
Sbjct: 287 LAEPEELN---QTEVTAYEVEGIGYDFIPTVLDRTVVDRWFKSTDKEAFAFARMLIAQEG 343

Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAE 339
           LL GGS+G+A+ VA +AA+ L+  QRCVVIL D VRNY++KF+SD WM++KGFL+E E
Sbjct: 344 LLCGGSAGSAVAVAVKAAQELQEGQRCVVILPDSVRNYMSKFLSDRWMLQKGFLEEEE 401

Only known pyridoxal phosphate-dependent enzyme that contains heme. Important regulator of hydrogen sulfide, especially in the brain, utilizing cysteine instead of serine to catalyze the formation of hydrogen sulfide. Hydrogen sulfide is a gastratransmitter with signaling and cytoprotective effects such as acting as a neuromodulator in the brain to protect neurons against hypoxic injury.

Oryctolagus cuniculus (taxid: 9986)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|P46794|CBS_DICDI Cystathionine beta-synthase OS=Dictyostelium discoideum GN=cysB PE=2 SV=2

 Score =  342 bits (878), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 180/333 (54%), Positives = 240/333 (72%), Gaps = 9/333 (2%)

Query: 22  GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
           G  PL+  +K  S L     AKCEF N  GS+KDR   RMI DAE +G +K G T++EP+
Sbjct: 41  GGTPLVRVNKVSSDLECELVAKCEFFNAGGSVKDRIGHRMIVDAEESGRIKKGDTLIEPT 100

Query: 82  SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAG 141
           SGNTGIGLA+ AAIKGYKM++ +P KMS+EKV  +KALGA+IIRT  + ++D PE  I  
Sbjct: 101 SGNTGIGLALTAAIKGYKMIITLPEKMSQEKVDVLKALGAEIIRTPTEAAFDAPESHIGV 160

Query: 142 AHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGR 201
           A ++ S++ N+ +LDQ+ NP+NPL+HY+ TAEE+L    GK+DMIV   GTGGT +GI R
Sbjct: 161 AKKLNSEIPNSHILDQYGNPSNPLAHYDGTAEELLEQCEGKIDMIVCTAGTGGTITGIAR 220

Query: 202 KIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQW 261
           KIKE+ P+C +VG DP GSILAQP+SLN+  +   SY ++EGIGY F    L+R ++DQW
Sbjct: 221 KIKERLPNCIVVGVDPHGSILAQPESLNNTNK---SY-KIEGIGYDFIPNVLERKLVDQW 276

Query: 262 GKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT 321
            K  DK++F+MARRLIK EGLL GGSSG+AM  A  AAK L+  QRCVV+LAD +RNY+T
Sbjct: 277 IKTDDKESFIMARRLIKEEGLLCGGSSGSAMVGALLAAKQLKKGQRCVVLLADSIRNYMT 336

Query: 322 KFISDEWMIEKGFLD-----EAEELEEMIHSGT 349
           K ++D+W+++ GF+D     + ++ EE  H  T
Sbjct: 337 KHLNDDWLVDNGFVDPEYKTKDQQEEEKYHGAT 369

Dictyostelium discoideum (taxid: 44689)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|P32582|CBS_YEAST Cystathionine beta-synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CYS4 PE=1 SV=1

 Score =  281 bits (718), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 150/327 (45%), Positives = 202/327 (61%), Gaps = 14/327 (4%)

Query: 22  GKVPLLPQSKQGSIL--LPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGY-TIV 78
           G  PL+   K    L   P   AK E  NP GS+KDR A  M+E+AE +G + P   T++
Sbjct: 19  GNTPLIALKKLPKALGIKPQIYAKLELYNPGGSIKDRIAKSMVEEAEASGRIHPSRSTLI 78

Query: 79  EPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM 138
           EP+SGNTGIGLA++ AIKGY+ ++ +P KMS EKV  +KALGA+IIRT    ++D PE  
Sbjct: 79  EPTSGNTGIGLALIGAIKGYRTIITLPEKMSNEKVSVLKALGAEIIRTPTAAAWDSPESH 138

Query: 139 IAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILR-----DTGGKVDMIVLGCGTG 193
           I  A ++  ++  AV+LDQ+ N  NP +HY  T  EI R     +    +  +V G GTG
Sbjct: 139 IGVAKKLEKEIPGAVILDQYNNMMNPEAHYFGTGREIQRQLEDLNLFDNLRAVVAGAGTG 198

Query: 194 GTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTL 253
           GT SGI + +KE+    ++VGADPFGSILAQP++LN   +  I+  +VEGIGY F    L
Sbjct: 199 GTISGISKYLKEQNDKIQIVGADPFGSILAQPENLN---KTDITDYKVEGIGYDFVPQVL 255

Query: 254 DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVA---CQAAKSLRPDQRCVV 310
           DR +ID W K  DK +F  AR+LI +EG+LVGGSSG+A       C+    L  D   V 
Sbjct: 256 DRKLIDVWYKTDDKPSFKYARQLISNEGVLVGGSSGSAFTAVVKYCEDHPELTEDDVIVA 315

Query: 311 ILADGVRNYLTKFISDEWMIEKGFLDE 337
           I  D +R+YLTKF+ DEW+ +    D+
Sbjct: 316 IFPDSIRSYLTKFVDDEWLKKNNLWDD 342

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q7D8W0|Y1077_MYCTU Putative cystathionine beta-synthase Rv1077 OS=Mycobacterium tuberculosis GN=cbs PE=1 SV=1

 Score =  201 bits (510), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 129/298 (43%), Positives = 169/298 (56%), Gaps = 10/298 (3%)

Query: 39  TTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
           T  AK E++NP GS KDR A +MIE AE +G LKPG TIVEP+SGNTG+GLA+VA  +GY
Sbjct: 29  TVAAKVEYLNPGGSSKDRIAVKMIEAAEASGQLKPGGTIVEPTSGNTGVGLALVAQRRGY 88

Query: 99  KMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQF 158
           K V V P K+S++K   + A GA+++          P    + + R+   +  A   DQ+
Sbjct: 89  KCVFVCPDKVSEDKRNVLIAYGAEVVVCPTAVPPHDPASYYSVSDRLVRDIDGAWKPDQY 148

Query: 159 RNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPS-CKLVGADP 217
            NP  P SHY TT  EI  DT GKV   V G GTGGT +G GR +KE      ++VGADP
Sbjct: 149 ANPEGPASHYVTTGPEIWADTEGKVTHFVAGIGTGGTITGAGRYLKEVSGGRVRIVGADP 208

Query: 218 FGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLI 277
            GS+ +       +         VEG+G  F     D +V D+     D D+F M RRL 
Sbjct: 209 EGSVYSGGAGRPYL---------VEGVGEDFWPAAYDPSVPDEIIAVSDSDSFDMTRRLA 259

Query: 278 KSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFL 335
           + E +LVGGS G A+  A + A+   PD   VV+L DG R Y++K  +D WM   GFL
Sbjct: 260 REEAMLVGGSCGMAVVAALKVAEEAGPDALIVVLLPDGGRGYMSKIFNDAWMSSYGFL 317

Mycobacterium tuberculosis (taxid: 1773)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|P0A534|CYSK_MYCTU O-acetylserine sulfhydrylase OS=Mycobacterium tuberculosis GN=cysK1 PE=1 SV=1

 Score =  189 bits (479), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 124/303 (40%), Positives = 173/303 (57%), Gaps = 16/303 (5%)

Query: 22  GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
           G+ PL+   +     +    AK EF NP  S+KDR    M++ AE AG++KP   I+EP+
Sbjct: 12  GRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKPDTIILEPT 71

Query: 82  SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAG 141
           SGNTGI LAMV A +GY+ V+ MP  MS E+   ++A GA++I T      D   G IA 
Sbjct: 72  SGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILT---PGADGMSGAIAK 128

Query: 142 AHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGR 201
           A  +A   +   V  QF NP NP  H  TTAEE+ RDT GKVD++V G GTGGT +G+ +
Sbjct: 129 AEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTGGTITGVAQ 188

Query: 202 KIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQW 261
            IKE+ PS + V  +P  S +        +   Q   + ++GIG  F    LD++++D+ 
Sbjct: 189 VIKERKPSARFVAVEPAASPV--------LSGGQKGPHPIQGIGAGFVPPVLDQDLVDEI 240

Query: 262 GKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPD---QRCVVILADGVRN 318
              G++D   +ARRL + EGLLVG SSG A   A Q A+  RP+   +  VV+L D    
Sbjct: 241 ITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVAR--RPENAGKLIVVVLPDFGER 298

Query: 319 YLT 321
           YL+
Sbjct: 299 YLS 301

Catalyzes the conversion of O-acetylserine (OAS) to cysteine through the elimination of acetate and addition of hydrogen sulfide.

Mycobacterium tuberculosis (taxid: 1773)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 7

>sp|P0A535|CYSK_MYCBO O-acetylserine sulfhydrylase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=cysK PE=3 SV=1

 Score =  189 bits (479), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 124/303 (40%), Positives = 173/303 (57%), Gaps = 16/303 (5%)

Query: 22  GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
           G+ PL+   +     +    AK EF NP  S+KDR    M++ AE AG++KP   I+EP+
Sbjct: 12  GRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKPDTIILEPT 71

Query: 82  SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAG 141
           SGNTGI LAMV A +GY+ V+ MP  MS E+   ++A GA++I T      D   G IA 
Sbjct: 72  SGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILT---PGADGMSGAIAK 128

Query: 142 AHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGR 201
           A  +A   +   V  QF NP NP  H  TTAEE+ RDT GKVD++V G GTGGT +G+ +
Sbjct: 129 AEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTGGTITGVAQ 188

Query: 202 KIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQW 261
            IKE+ PS + V  +P  S +        +   Q   + ++GIG  F    LD++++D+ 
Sbjct: 189 VIKERKPSARFVAVEPAASPV--------LSGGQKGPHPIQGIGAGFVPPVLDQDLVDEI 240

Query: 262 GKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPD---QRCVVILADGVRN 318
              G++D   +ARRL + EGLLVG SSG A   A Q A+  RP+   +  VV+L D    
Sbjct: 241 ITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVAR--RPENAGKLIVVVLPDFGER 298

Query: 319 YLT 321
           YL+
Sbjct: 299 YLS 301

Catalyzes the conversion of O-acetylserine (OAS) to cysteine through the elimination of acetate and addition of hydrogen sulfide.

Mycobacterium bovis (taxid: 1765)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	404
196012808	522	hypothetical protein TRIADDRAFT_30632 [T	0.722	0.559	0.591	1e-101
195392423	520	GJ24676 [Drosophila virilis] gi|19415294	0.732	0.569	0.581	1e-101
402862246	463	PREDICTED: cystathionine beta-synthase i	0.740	0.645	0.576	1e-100
402862240	551	PREDICTED: cystathionine beta-synthase i	0.740	0.542	0.576	1e-100
296232238	551	PREDICTED: cystathionine beta-synthase i	0.735	0.539	0.576	1e-100
355560253	565	hypothetical protein EGK_13203 [Macaca m	0.740	0.529	0.576	1e-100
390478240	565	PREDICTED: cystathionine beta-synthase [	0.735	0.525	0.576	1e-100
158186659	547	cystathionine beta-synthase [Rattus norv	0.725	0.535	0.594	1e-100
417402843	569	Putative cysteine synthase [Desmodus rot	0.730	0.518	0.573	1e-100
75060521	551	RecName: Full=Cystathionine beta-synthas	0.740	0.542	0.576	1e-100

>gi|196012808|ref|XP_002116266.1| hypothetical protein TRIADDRAFT_30632 [Trichoplax adhaerens] gi|190581221|gb|EDV21299.1| hypothetical protein TRIADDRAFT_30632 [Trichoplax adhaerens]

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/296 (59%), Positives = 226/296 (76%), Gaps = 4/296 (1%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
           AKCEFMN  GS+KDR A RM+E+AE  G +KPGYT++EP+SGNTGIGLA+VAA+KGY+ +
Sbjct: 76  AKCEFMNAGGSVKDRIALRMVEEAEREGKIKPGYTLIEPTSGNTGIGLALVAAVKGYRCI 135

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
           +VMP KMS EKV T++ALGA+I+RT  + S+D PE  IA A R+  + KNA++L+Q+ N 
Sbjct: 136 IVMPEKMSAEKVLTLRALGAEIVRTPTNASFDSPESHIAVAERLQKETKNAIILNQYVNA 195

Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221
            NPL+HY+TTAEE+L     K+D++V G GTGGT SGIGRK+KEK  + K++G DP GSI
Sbjct: 196 GNPLAHYDTTAEELLYQCDSKIDVLVAGAGTGGTVSGIGRKLKEKIKNVKIIGVDPLGSI 255

Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
           LAQP+ LN       S   VEGIGY F  T +DRNV+DQW KC DKD+F  AR LI+ EG
Sbjct: 256 LAQPKELN----VDSSGYHVEGIGYDFIPTVIDRNVVDQWYKCNDKDSFEYARYLIREEG 311

Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDE 337
           LL GGSSG+A+ +A Q AK L  +Q CVVIL D +RNY+TKF++D+WMIE GF+++
Sbjct: 312 LLCGGSSGSALSIALQTAKDLNENQTCVVILPDSIRNYMTKFVNDDWMIENGFMED 367

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Phylum: Placozoa

Superkingdom: Eukaryota

>gi|195392423|ref|XP_002054857.1| GJ24676 [Drosophila virilis] gi|194152943|gb|EDW68377.1| GJ24676 [Drosophila virilis]

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/299 (58%), Positives = 218/299 (72%), Gaps = 3/299 (1%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
           AKCEF+NP GS+KDR  +RM++DAE  G+LKPGYTI+EP+SGNTGIGLAM +A+KGYK +
Sbjct: 76  AKCEFLNPGGSVKDRIGYRMVQDAEEKGLLKPGYTIIEPTSGNTGIGLAMASAVKGYKCI 135

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
           +VMP KMS EKV  ++ LGA IIRT  + +YD PEG+I  A ++  Q  N++VLDQ+RNP
Sbjct: 136 IVMPEKMSNEKVSALRTLGATIIRTPTEAAYDSPEGLIYVAQQLQRQTPNSIVLDQYRNP 195

Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221
            NPL+HY+ TA EIL     KVDMI+   GT GT SGIGRKIKE+ P+C++VG DPFGS+
Sbjct: 196 GNPLAHYDGTAAEILWQMDNKVDMIICAAGTAGTISGIGRKIKEQAPNCRVVGVDPFGSV 255

Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
           LA P  +N   +  + + EVEGIGY F  T  D  V+D W K  D D F M+RRL   EG
Sbjct: 256 LASPPEIN---KTDVQFYEVEGIGYDFPPTVFDDKVVDVWTKVYDADCFPMSRRLNAEEG 312

Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEE 340
           LL GGSSG AMH A + A++L+P QRCVVIL DG+RNY+TKF+SD WM  +GF     E
Sbjct: 313 LLCGGSSGAAMHAALEHARTLKPGQRCVVILPDGIRNYMTKFVSDNWMEARGFKQPVNE 371

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|402862246|ref|XP_003895477.1| PREDICTED: cystathionine beta-synthase isoform 4 [Papio anubis]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/302 (57%), Positives = 228/302 (75%), Gaps = 3/302 (0%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
           AKCEF N  GS+KDR + RMIEDAE AG LKPG TI+EP+SGNTGIGLA+ AA++GY+ +
Sbjct: 19  AKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTIIEPTSGNTGIGLALTAAVRGYRCI 78

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
           +VMP KMS EKV  ++ALGA+I+RT  +  +D PE  +  A R+ +++ N+ +LDQ+RN 
Sbjct: 79  IVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNA 138

Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221
           +NPL+HY+TTA+EILR   GK+DM+V   GTGGT +GI RK+KEKCP C+++G DP GSI
Sbjct: 139 SNPLAHYDTTADEILRQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSI 198

Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
           LA+P+ LN     Q +Y EVEGIGY F  T LDR V+D+W K  D++ F  AR LI  EG
Sbjct: 199 LAEPEELNQT--EQTTY-EVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEG 255

Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEEL 341
           LL GGS+G+ M VA +AA+ L+  QRCVVIL D VRNY+TKF+SD WM++KGFL E + +
Sbjct: 256 LLCGGSAGSTMAVAVKAAQELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKEEDLM 315

Query: 342 EE 343
           E+
Sbjct: 316 EK 317

Source: Papio anubis

Species: Papio anubis

Genus: Papio

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|402862240|ref|XP_003895474.1| PREDICTED: cystathionine beta-synthase isoform 1 [Papio anubis] gi|402862242|ref|XP_003895475.1| PREDICTED: cystathionine beta-synthase isoform 2 [Papio anubis] gi|402862244|ref|XP_003895476.1| PREDICTED: cystathionine beta-synthase isoform 3 [Papio anubis]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/302 (57%), Positives = 228/302 (75%), Gaps = 3/302 (0%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
           AKCEF N  GS+KDR + RMIEDAE AG LKPG TI+EP+SGNTGIGLA+ AA++GY+ +
Sbjct: 107 AKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTIIEPTSGNTGIGLALTAAVRGYRCI 166

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
           +VMP KMS EKV  ++ALGA+I+RT  +  +D PE  +  A R+ +++ N+ +LDQ+RN 
Sbjct: 167 IVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNA 226

Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221
           +NPL+HY+TTA+EILR   GK+DM+V   GTGGT +GI RK+KEKCP C+++G DP GSI
Sbjct: 227 SNPLAHYDTTADEILRQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSI 286

Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
           LA+P+ LN     Q +Y EVEGIGY F  T LDR V+D+W K  D++ F  AR LI  EG
Sbjct: 287 LAEPEELNQT--EQTTY-EVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEG 343

Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEEL 341
           LL GGS+G+ M VA +AA+ L+  QRCVVIL D VRNY+TKF+SD WM++KGFL E + +
Sbjct: 344 LLCGGSAGSTMAVAVKAAQELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKEEDLM 403

Query: 342 EE 343
           E+
Sbjct: 404 EK 405

Source: Papio anubis

Species: Papio anubis

Genus: Papio

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|296232238|ref|XP_002761502.1| PREDICTED: cystathionine beta-synthase isoform 1 [Callithrix jacchus]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/300 (57%), Positives = 226/300 (75%), Gaps = 3/300 (1%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
           AKCEF N  GS+KDR + RMIEDAE AG LKPG TI+EP+SGNTGIGLA+ AA++GY+ +
Sbjct: 107 AKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCI 166

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
           +VMP KMS EKV  ++ALGA+I+RT     +D PE  +  A R+ +++ N+ +LDQ+RN 
Sbjct: 167 IVMPEKMSSEKVDVLRALGAEIVRTPTSARFDSPESHVGVAWRLKNEIPNSHILDQYRNA 226

Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221
           +NPL+HY++TAEEIL+   GK+DM+V   GTGGT +GI RK+KEKCP CK++G DP GSI
Sbjct: 227 SNPLAHYDSTAEEILQQCDGKLDMLVASAGTGGTITGIARKLKEKCPGCKIIGVDPEGSI 286

Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
           LA+P+ LN     ++S  EVEGIGY F  T LDR V+D+W K  D++ F  AR LI  EG
Sbjct: 287 LAEPEELN---RTELSTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLISQEG 343

Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEEL 341
           LL GGS+G+ + VA +AA+ L+ DQRCVVIL D VRNY+TKF+SD WM++KGFL E + L
Sbjct: 344 LLCGGSAGSTVAVAVKAAQELQEDQRCVVILPDSVRNYMTKFLSDRWMVQKGFLKEEDLL 403

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355560253|gb|EHH16939.1| hypothetical protein EGK_13203 [Macaca mulatta]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/302 (57%), Positives = 228/302 (75%), Gaps = 3/302 (0%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
           AKCEF N  GS+KDR + RMIEDAE AG LKPG TI+EP+SGNTGIGLA+ AA++GY+ +
Sbjct: 107 AKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTIIEPTSGNTGIGLALTAAVRGYRCI 166

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
           +VMP KMS EKV  ++ALGA+I+RT  +  +D PE  +  A R+ +++ N+ +LDQ+RN 
Sbjct: 167 IVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNA 226

Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221
           +NPL+HY+TTA+EILR   GK+DM+V   GTGGT +GI RK+KEKCP C+++G DP GSI
Sbjct: 227 SNPLAHYDTTADEILRQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSI 286

Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
           LA+P+ LN     Q +Y EVEGIGY F  T LDR V+D+W K  D++ F  AR LI  EG
Sbjct: 287 LAEPEELNQT--EQTTY-EVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEG 343

Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEEL 341
           LL GGS+G+ M VA +AA+ L+  QRCVVIL D VRNY+TKF+SD WM++KGFL E + +
Sbjct: 344 LLCGGSAGSTMAVAVKAAQELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKEEDLM 403

Query: 342 EE 343
           E+
Sbjct: 404 EK 405

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390478240|ref|XP_003735453.1| PREDICTED: cystathionine beta-synthase [Callithrix jacchus]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/300 (57%), Positives = 226/300 (75%), Gaps = 3/300 (1%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
           AKCEF N  GS+KDR + RMIEDAE AG LKPG TI+EP+SGNTGIGLA+ AA++GY+ +
Sbjct: 107 AKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCI 166

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
           +VMP KMS EKV  ++ALGA+I+RT     +D PE  +  A R+ +++ N+ +LDQ+RN 
Sbjct: 167 IVMPEKMSSEKVDVLRALGAEIVRTPTSARFDSPESHVGVAWRLKNEIPNSHILDQYRNA 226

Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221
           +NPL+HY++TAEEIL+   GK+DM+V   GTGGT +GI RK+KEKCP CK++G DP GSI
Sbjct: 227 SNPLAHYDSTAEEILQQCDGKLDMLVASAGTGGTITGIARKLKEKCPGCKIIGVDPEGSI 286

Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
           LA+P+ LN     ++S  EVEGIGY F  T LDR V+D+W K  D++ F  AR LI  EG
Sbjct: 287 LAEPEELN---RTELSTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLISQEG 343

Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEEL 341
           LL GGS+G+ + VA +AA+ L+ DQRCVVIL D VRNY+TKF+SD WM++KGFL E + L
Sbjct: 344 LLCGGSAGSTVAVAVKAAQELQEDQRCVVILPDSVRNYMTKFLSDRWMVQKGFLKEEDLL 403

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|158186659|ref|NP_036654.2| cystathionine beta-synthase [Rattus norvegicus] gi|206600|gb|AAA42024.1| cystathionine beta-synthase [Rattus norvegicus] gi|149043572|gb|EDL97023.1| cystathionine beta synthase, isoform CRA_d [Rattus norvegicus]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/296 (59%), Positives = 225/296 (76%), Gaps = 3/296 (1%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
           AKCEF N  GS+KDR + RMIEDAE AG LKPG TI+EP+SGNTGIGLA+ AA+KGY+ +
Sbjct: 104 AKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTIIEPTSGNTGIGLALAAAVKGYRCI 163

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
           +VMP KMS EKV  ++ALGA+I+RT  +  +D PE  +  A R+ +++ N+ +LDQ+RN 
Sbjct: 164 IVMPEKMSMEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNA 223

Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221
           +NPL+HY+ TAEEIL+   GKVDM+V   GTGGT +GI RK+KEKCP CK++G DP GSI
Sbjct: 224 SNPLAHYDDTAEEILQQCDGKVDMLVASAGTGGTITGIARKLKEKCPGCKIIGVDPEGSI 283

Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
           LA+P+ LN     Q +Y EVEGIGY F  T LDR V+D+W K  D D+F  AR LI  EG
Sbjct: 284 LAEPEELNQT--EQTAY-EVEGIGYDFIPTVLDRAVVDRWFKSNDDDSFAFARMLISQEG 340

Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDE 337
           LL GGSSG+AM VA +AA+ L+  QRCVVIL D VRNY++KF+SD+WM++KGF+ E
Sbjct: 341 LLCGGSSGSAMAVAVKAAQELKEGQRCVVILPDSVRNYMSKFLSDKWMLQKGFMKE 396

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|417402843|gb|JAA48253.1| Putative cysteine synthase [Desmodus rotundus]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/298 (57%), Positives = 227/298 (76%), Gaps = 3/298 (1%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
           AKCEF N  GS+KDR + RM+E+AE AG LKPG TI+EP+SGNTGIGLA+ AA+KGY+ +
Sbjct: 107 AKCEFFNAGGSVKDRISLRMVEEAERAGTLKPGDTIIEPTSGNTGIGLALAAAVKGYRCI 166

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
           +VMP KMS EKV  ++ALGA+I+RT     +D PE  +  A R+ +++ N+ +LDQ+RN 
Sbjct: 167 IVMPEKMSSEKVDVLRALGAEIVRTPTSARFDSPESHVGVAWRLKNEIPNSHILDQYRNA 226

Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221
           NNP++HY++TAEEIL+   GK+DM+V   GTGGT +GI RK+KEKCP CK++G DP GSI
Sbjct: 227 NNPVAHYDSTAEEILQQCDGKLDMLVASAGTGGTITGIARKLKEKCPGCKIIGVDPEGSI 286

Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
           LA+P+ LN     +++  EVEGIGY F  T LDR+V+D+W KC D+++F  AR LI  EG
Sbjct: 287 LAEPEELN---RTEVTAYEVEGIGYDFIPTVLDRSVVDKWFKCNDQESFAFARMLIAQEG 343

Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAE 339
           LL GGSSG+AM VA + A+ LR  QRCVVIL D VRNY++KF+SD+WM++K FL E +
Sbjct: 344 LLCGGSSGSAMAVAVKVAQELREGQRCVVILPDSVRNYMSKFLSDKWMLQKRFLKEED 401

Source: Desmodus rotundus

Species: Desmodus rotundus

Genus: Desmodus

Family: Phyllostomidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|75060521|sp|Q58H57.3|CBS_MACFA RecName: Full=Cystathionine beta-synthase; AltName: Full=Beta-thionase; AltName: Full=Serine sulfhydrase gi|61661431|gb|AAX51303.1| cystathionine beta-synthase [Macaca fascicularis] gi|380789741|gb|AFE66746.1| cystathionine beta-synthase [Macaca mulatta]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/302 (57%), Positives = 228/302 (75%), Gaps = 3/302 (0%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
           AKCEF N  GS+KDR + RMIEDAE AG LKPG TI+EP+SGNTGIGLA+ AA++GY+ +
Sbjct: 107 AKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTIIEPTSGNTGIGLALTAAVRGYRCI 166

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
           +VMP KMS EKV  ++ALGA+I+RT  +  +D PE  +  A R+ +++ N+ +LDQ+RN 
Sbjct: 167 IVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNA 226

Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221
           +NPL+HY+TTA+EILR   GK+DM+V   GTGGT +GI RK+KEKCP C+++G DP GSI
Sbjct: 227 SNPLAHYDTTADEILRQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSI 286

Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
           LA+P+ LN     Q +Y EVEGIGY F  T LDR V+D+W K  D++ F  AR LI  EG
Sbjct: 287 LAEPEELNQT--EQTTY-EVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEG 343

Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEEL 341
           LL GGS+G+ M VA +AA+ L+  QRCVVIL D VRNY+TKF+SD WM++KGFL E + +
Sbjct: 344 LLCGGSAGSTMAVAVKAAQELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKEEDLM 403

Query: 342 EE 343
           E+
Sbjct: 404 EK 405

Source: Macaca fascicularis

Species: Macaca fascicularis

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	404
UNIPROTKB|E1BYG4	552	CBS "Uncharacterized protein"	0.782	0.572	0.512	1.2e-83
ZFIN|ZDB-GENE-021030-3	597	cbsb "cystathionine-beta-synth	0.732	0.495	0.54	3.9e-83
RGD|2287	561	Cbs "cystathionine beta syntha	0.725	0.522	0.540	2.8e-82
UNIPROTKB|P32232	561	Cbs "Cystathionine beta-syntha	0.725	0.522	0.540	2.8e-82
UNIPROTKB|Q58H57	551	CBS "Cystathionine beta-syntha	0.740	0.542	0.523	3.6e-82
FB|FBgn0031148	522	Cbs "Cystathionine beta-syntha	0.824	0.637	0.484	4.5e-82
UNIPROTKB|Q9N0V7	551	CBS "Cystathionine beta-syntha	0.732	0.537	0.526	9.4e-82
MGI|MGI:88285	561	Cbs "cystathionine beta-syntha	0.725	0.522	0.537	9.4e-82
UNIPROTKB|F1MEW4	571	CBS "Uncharacterized protein"	0.730	0.516	0.526	2.5e-81
ZFIN|ZDB-GENE-050417-367	571	cbsa "cystathionine-beta-synth	0.779	0.551	0.507	2.5e-81

UNIPROTKB|E1BYG4 CBS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 165/322 (51%), Positives = 218/322 (67%)

Query:    22 GKVPLLPQSKQGSILLPTTD--AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVE 79
             G  PL+  +K G       +  AKCE+ N  GS+KDR + RM+EDAE AG+LKPG TI+E
Sbjct:    87 GNTPLVRINKIGKYFGLKCELLAKCEYFNAGGSVKDRISLRMVEDAERAGILKPGDTIIE 146

Query:    80 PSSGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMI 139
             P+SGNTGIGLA+ AA+KGY                 ++ALGA+I+RT     +D PE  +
Sbjct:   147 PTSGNTGIGLALAAAVKGYRCIIVMPEKMSMEKVDVLRALGAEIVRTPTTARFDSPESHV 206

Query:   140 AGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXX 199
               A R+ +++ NA +LDQ+RN +NPL+HY+TTAEEIL+   GK+DM+V            
Sbjct:   207 GVAWRLKNEIPNAHILDQYRNASNPLTHYDTTAEEILQQCEGKIDMLVATAGTGGTITGI 266

Query:   200 XRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVID 259
              RK+KEKCP CK++G DP GSILAQP  LN   +    Y EVEGIGY F  T LDR+++D
Sbjct:   267 SRKLKEKCPGCKIIGVDPEGSILAQPDELNKTDKTM--Y-EVEGIGYDFVPTVLDRSLVD 323

Query:   260 QWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNY 319
             QW K  D+++F +AR LI+ EGLL GGSSG+AM VA +AAK L+  QRCVVI  D +RNY
Sbjct:   324 QWYKSNDEESFALARMLIREEGLLCGGSSGSAMSVAVKAAKELKEGQRCVVIFPDSIRNY 383

Query:   320 LTKFISDEWMIEKGFLDEAEEL 341
             ++KF+SD+WMI+KGF+ E E+L
Sbjct:   384 MSKFLSDKWMIQKGFMTE-EDL 404

GO:0006535 "cysteine biosynthetic process from serine" evidence=IEA

GO:0019343 "cysteine biosynthetic process via cystathionine" evidence=IEA

GO:0001958 "endochondral ossification" evidence=IEA

GO:0001974 "blood vessel remodeling" evidence=IEA

GO:0004122 "cystathionine beta-synthase activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006565 "L-serine catabolic process" evidence=IEA

GO:0006801 "superoxide metabolic process" evidence=IEA

GO:0019448 "L-cysteine catabolic process" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0021587 "cerebellum morphogenesis" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0030823 "regulation of cGMP metabolic process" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043418 "homocysteine catabolic process" evidence=IEA

GO:0043506 "regulation of JUN kinase activity" evidence=IEA

GO:0050880 "regulation of blood vessel size" evidence=IEA

GO:0051593 "response to folic acid" evidence=IEA

GO:0060135 "maternal process involved in female pregnancy" evidence=IEA

GO:0060351 "cartilage development involved in endochondral bone morphogenesis" evidence=IEA

GO:0072341 "modified amino acid binding" evidence=IEA

ZFIN|ZDB-GENE-021030-3 cbsb "cystathionine-beta-synthase b" [Danio rerio (taxid:7955)]

 Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
 Identities = 162/300 (54%), Positives = 205/300 (68%)

Query:    42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXX 101
             AKCEF N  GS+KDR + RMIEDAE  G LKPG TI+EP+SGNTGIGLA+ AA+KGY   
Sbjct:   142 AKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVKGYRCI 201

Query:   102 XXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
                           ++ALGA+I+RT     +D PE  +  A R+ +++ NA +LDQ+RNP
Sbjct:   202 IVMPEKMSMEKVDVLRALGAEIVRTPTSARFDSPESHVGVAWRLKNEIPNAHILDQYRNP 261

Query:   162 NNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGSI 221
             +NPL+HY+TTAEEIL   GGK+DM+V             RK+KEKCP  K++G DP GSI
Sbjct:   262 SNPLAHYDTTAEEILEQCGGKIDMLVAGAGTGGTITGIARKLKEKCPDIKIIGVDPEGSI 321

Query:   222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
             LA+P  LN   + Q  Y EVEGIGY F  T LDR+V+D W K  D+++F M+R LI+ EG
Sbjct:   322 LAEPDELNKTDKTQ--Y-EVEGIGYDFIPTVLDRSVVDNWYKSNDEESFAMSRMLIREEG 378

Query:   282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEEL 341
             LL GGSSGTAM  A   AK L+  QRCVVIL D +RNY++KF+SD+WM EKGF+ E E+L
Sbjct:   379 LLCGGSSGTAMSAAVNVAKELKEGQRCVVILPDSIRNYMSKFLSDKWMFEKGFMSE-EDL 437

GO:0019343 "cysteine biosynthetic process via cystathionine" evidence=IEA

GO:0006535 "cysteine biosynthetic process from serine" evidence=IEA

GO:0004122 "cystathionine beta-synthase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

RGD|2287 Cbs "cystathionine beta synthase" [Rattus norvegicus (taxid:10116)]

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 160/296 (54%), Positives = 205/296 (69%)

Query:    42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXX 101
             AKCEF N  GS+KDR + RMIEDAE AG LKPG TI+EP+SGNTGIGLA+ AA+KGY   
Sbjct:   104 AKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTIIEPTSGNTGIGLALAAAVKGYRCI 163

Query:   102 XXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
                           ++ALGA+I+RT  +  +D PE  +  A R+ +++ N+ +LDQ+RN 
Sbjct:   164 IVMPEKMSMEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNA 223

Query:   162 NNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGSI 221
             +NPL+HY+ TAEEIL+   GKVDM+V             RK+KEKCP CK++G DP GSI
Sbjct:   224 SNPLAHYDDTAEEILQQCDGKVDMLVASAGTGGTITGIARKLKEKCPGCKIIGVDPEGSI 283

Query:   222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
             LA+P+ LN     Q +Y EVEGIGY F  T LDR V+D+W K  D D+F  AR LI  EG
Sbjct:   284 LAEPEELNQT--EQTAY-EVEGIGYDFIPTVLDRAVVDRWFKSNDDDSFAFARMLISQEG 340

Query:   282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDE 337
             LL GGSSG+AM VA +AA+ L+  QRCVVIL D VRNY++KF+SD+WM++KGF+ E
Sbjct:   341 LLCGGSSGSAMAVAVKAAQELKEGQRCVVILPDSVRNYMSKFLSDKWMLQKGFMKE 396

GO:0001958 "endochondral ossification" evidence=IEA;ISO

GO:0001974 "blood vessel remodeling" evidence=IEA;ISO

GO:0004122 "cystathionine beta-synthase activity" evidence=IEA;ISO;IDA;TAS

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006535 "cysteine biosynthetic process from serine" evidence=IEA;TAS

GO:0006563 "L-serine metabolic process" evidence=ISO

GO:0006565 "L-serine catabolic process" evidence=IEA;ISO

GO:0006801 "superoxide metabolic process" evidence=IEA;ISO

GO:0019343 "cysteine biosynthetic process via cystathionine" evidence=IEA

GO:0019344 "cysteine biosynthetic process" evidence=ISO

GO:0019346 "transsulfuration" evidence=IDA

GO:0019448 "L-cysteine catabolic process" evidence=IEA;ISO

GO:0019899 "enzyme binding" evidence=ISO

GO:0020037 "heme binding" evidence=IEA;ISO

GO:0021587 "cerebellum morphogenesis" evidence=IEA;ISO

GO:0030170 "pyridoxal phosphate binding" evidence=IEA;ISO;TAS

GO:0030823 "regulation of cGMP metabolic process" evidence=IEA;ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA;ISO

GO:0031667 "response to nutrient levels" evidence=IEP

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0043066 "negative regulation of apoptotic process" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0043418 "homocysteine catabolic process" evidence=IEA;ISO

GO:0043506 "regulation of JUN kinase activity" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0050667 "homocysteine metabolic process" evidence=ISO;IDA;TAS

GO:0050880 "regulation of blood vessel size" evidence=IEA;ISO

GO:0051593 "response to folic acid" evidence=IEA;ISO

GO:0060135 "maternal process involved in female pregnancy" evidence=IEA;ISO

GO:0060351 "cartilage development involved in endochondral bone morphogenesis" evidence=IEA;ISO

GO:0070814 "hydrogen sulfide biosynthetic process" evidence=ISO;IDA

GO:0071456 "cellular response to hypoxia" evidence=IDA

GO:0072341 "modified amino acid binding" evidence=IEA;ISO

UNIPROTKB|P32232 Cbs "Cystathionine beta-synthase" [Rattus norvegicus (taxid:10116)]

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 160/296 (54%), Positives = 205/296 (69%)

Query:    42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXX 101
             AKCEF N  GS+KDR + RMIEDAE AG LKPG TI+EP+SGNTGIGLA+ AA+KGY   
Sbjct:   104 AKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTIIEPTSGNTGIGLALAAAVKGYRCI 163

Query:   102 XXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
                           ++ALGA+I+RT  +  +D PE  +  A R+ +++ N+ +LDQ+RN 
Sbjct:   164 IVMPEKMSMEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNA 223

Query:   162 NNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGSI 221
             +NPL+HY+ TAEEIL+   GKVDM+V             RK+KEKCP CK++G DP GSI
Sbjct:   224 SNPLAHYDDTAEEILQQCDGKVDMLVASAGTGGTITGIARKLKEKCPGCKIIGVDPEGSI 283

Query:   222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
             LA+P+ LN     Q +Y EVEGIGY F  T LDR V+D+W K  D D+F  AR LI  EG
Sbjct:   284 LAEPEELNQT--EQTAY-EVEGIGYDFIPTVLDRAVVDRWFKSNDDDSFAFARMLISQEG 340

Query:   282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDE 337
             LL GGSSG+AM VA +AA+ L+  QRCVVIL D VRNY++KF+SD+WM++KGF+ E
Sbjct:   341 LLCGGSSGSAMAVAVKAAQELKEGQRCVVILPDSVRNYMSKFLSDKWMLQKGFMKE 396

GO:0001958 "endochondral ossification" evidence=IEA

GO:0001974 "blood vessel remodeling" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006565 "L-serine catabolic process" evidence=IEA

GO:0006801 "superoxide metabolic process" evidence=IEA

GO:0019343 "cysteine biosynthetic process via cystathionine" evidence=IEA

GO:0019448 "L-cysteine catabolic process" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0021587 "cerebellum morphogenesis" evidence=IEA

GO:0030823 "regulation of cGMP metabolic process" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043418 "homocysteine catabolic process" evidence=IEA

GO:0043506 "regulation of JUN kinase activity" evidence=IEA

GO:0050880 "regulation of blood vessel size" evidence=IEA

GO:0051593 "response to folic acid" evidence=IEA

GO:0060135 "maternal process involved in female pregnancy" evidence=IEA

GO:0060351 "cartilage development involved in endochondral bone morphogenesis" evidence=IEA

GO:0072341 "modified amino acid binding" evidence=IEA

UNIPROTKB|Q58H57 CBS "Cystathionine beta-synthase" [Macaca fascicularis (taxid:9541)]

 Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
 Identities = 158/302 (52%), Positives = 208/302 (68%)

Query:    42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXX 101
             AKCEF N  GS+KDR + RMIEDAE AG LKPG TI+EP+SGNTGIGLA+ AA++GY   
Sbjct:   107 AKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTIIEPTSGNTGIGLALTAAVRGYRCI 166

Query:   102 XXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
                           ++ALGA+I+RT  +  +D PE  +  A R+ +++ N+ +LDQ+RN 
Sbjct:   167 IVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNA 226

Query:   162 NNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGSI 221
             +NPL+HY+TTA+EILR   GK+DM+V             RK+KEKCP C+++G DP GSI
Sbjct:   227 SNPLAHYDTTADEILRQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSI 286

Query:   222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
             LA+P+ LN     Q +Y EVEGIGY F  T LDR V+D+W K  D++ F  AR LI  EG
Sbjct:   287 LAEPEELNQT--EQTTY-EVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEG 343

Query:   282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEEL 341
             LL GGS+G+ M VA +AA+ L+  QRCVVIL D VRNY+TKF+SD WM++KGFL E + +
Sbjct:   344 LLCGGSAGSTMAVAVKAAQELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKEEDLM 403

Query:   342 EE 343
             E+
Sbjct:   404 EK 405

GO:0070814 "hydrogen sulfide biosynthetic process" evidence=ISS

FB|FBgn0031148 Cbs "Cystathionine beta-synthase" [Drosophila melanogaster (taxid:7227)]

 Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
 Identities = 168/347 (48%), Positives = 215/347 (61%)

Query:     3 EKS--LYSNSARNSPFTPTVPGKVPLLPQSKQGSILLPTTD-------AKCEFMNPTGSL 53
             EKS  ++   A     TP +   +   P  K  +I  P +D       AKCEF+NP GS+
Sbjct:    30 EKSPHIHRGIAHRQQITPNILEVIGCTPLVKLNNI--PASDGIECEMYAKCEFLNPGGSV 87

Query:    54 KDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXX 113
             KDR  +RM++DAE  G+LKPGYTI+EP+SGNTGIGLAM  A+KGY               
Sbjct:    88 KDRIGYRMVQDAEEQGLLKPGYTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKV 147

Query:   114 YTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAE 173
               ++ LGAKIIRT  + +YD PEG+I  A ++  +  N++VLDQ+RN  NPL+HY+ TA 
Sbjct:   148 SALRTLGAKIIRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAA 207

Query:   174 EILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPE 233
             EIL     KVDMIV+            RKIKE+ PSC++VG DP+GSILA+P  LN   +
Sbjct:   208 EILWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELN---K 264

Query:   234 NQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMH 293
               + + EVEGIGY F  T  D  V+D W K GD D F M+RRL   EGLL GGSSG AMH
Sbjct:   265 TDVQFYEVEGIGYDFPPTVFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMH 324

Query:   294 VACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEE 340
              A + A+ L+  QRCVVIL DG+RNY+TKF+SD WM  + F +   E
Sbjct:   325 AALEHARKLKKGQRCVVILPDGIRNYMTKFVSDNWMEARNFKEPVNE 371

GO:0004122 "cystathionine beta-synthase activity" evidence=ISS

GO:0006535 "cysteine biosynthetic process from serine" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0019343 "cysteine biosynthetic process via cystathionine" evidence=IEA

GO:0008340 "determination of adult lifespan" evidence=IMP

UNIPROTKB|Q9N0V7 CBS "Cystathionine beta-synthase" [Oryctolagus cuniculus (taxid:9986)]

 Score = 820 (293.7 bits), Expect = 9.4e-82, P = 9.4e-82
 Identities = 158/300 (52%), Positives = 209/300 (69%)

Query:    42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXX 101
             AKCEF N  GS+KDR + RMIEDAE AG L+PG TI+EP+SGNTGIGLA+ AA+KGY   
Sbjct:   107 AKCEFFNAGGSVKDRISLRMIEDAERAGTLRPGDTIIEPTSGNTGIGLALAAAVKGYRCI 166

Query:   102 XXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
                           ++ALGA+I+RT  +  +D PE  +  A R+  ++ N+ +LDQ+RN 
Sbjct:   167 IVMPEKMSLEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKQEIPNSHILDQYRNA 226

Query:   162 NNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGSI 221
             +NPL+HY+TTAEEIL+   GK+DM+V             RK+KEKCP C+++G DP GSI
Sbjct:   227 SNPLAHYDTTAEEILQQCDGKLDMLVASAGTGGTITGIARKLKEKCPGCQIIGVDPEGSI 286

Query:   222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
             LA+P+ LN   + +++  EVEGIGY F  T LDR V+D+W K  DK+ F  AR LI  EG
Sbjct:   287 LAEPEELN---QTEVTAYEVEGIGYDFIPTVLDRTVVDRWFKSTDKEAFAFARMLIAQEG 343

Query:   282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEEL 341
             LL GGS+G+A+ VA +AA+ L+  QRCVVIL D VRNY++KF+SD WM++KGFL+E EEL
Sbjct:   344 LLCGGSAGSAVAVAVKAAQELQEGQRCVVILPDSVRNYMSKFLSDRWMLQKGFLEE-EEL 402

GO:0070814 "hydrogen sulfide biosynthetic process" evidence=ISS

MGI|MGI:88285 Cbs "cystathionine beta-synthase" [Mus musculus (taxid:10090)]

 Score = 820 (293.7 bits), Expect = 9.4e-82, P = 9.4e-82
 Identities = 159/296 (53%), Positives = 206/296 (69%)

Query:    42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXX 101
             AKCEF N  GS+KDR + RMIEDAE AG LKPG TI+EP+SGNTGIGLA+ AA+KGY   
Sbjct:   104 AKCEFFNAGGSVKDRISLRMIEDAERAGNLKPGDTIIEPTSGNTGIGLALAAAVKGYRCI 163

Query:   102 XXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
                           ++ALGA+I+RT  +  +D PE  +  A R+ +++ N+ +LDQ+RN 
Sbjct:   164 IVMPEKMSMEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNA 223

Query:   162 NNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGSI 221
             +NPL+HY+ TAEEIL+   GK+DM+V             RK+KEKCP CK++G DP GSI
Sbjct:   224 SNPLAHYDDTAEEILQQCDGKLDMLVASAGTGGTITGIARKLKEKCPGCKIIGVDPEGSI 283

Query:   222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
             LA+P+ LN     Q +Y EVEGIGY F  T LDR V+D+W K  D+D+F  AR LI  EG
Sbjct:   284 LAEPEELNQT--EQTAY-EVEGIGYDFIPTVLDRAVVDKWFKSNDEDSFAFARMLIAQEG 340

Query:   282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDE 337
             LL GGSSG+AM VA +AA+ L+  QRCVVIL D VRNY++KF+SD+WM++KGF+ E
Sbjct:   341 LLCGGSSGSAMAVAVKAARELQEGQRCVVILPDSVRNYMSKFLSDKWMLQKGFMKE 396

GO:0001958 "endochondral ossification" evidence=IMP

GO:0001974 "blood vessel remodeling" evidence=IMP

GO:0004122 "cystathionine beta-synthase activity" evidence=ISO;IMP

GO:0004124 "cysteine synthase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006535 "cysteine biosynthetic process from serine" evidence=IEA

GO:0006563 "L-serine metabolic process" evidence=ISO

GO:0006565 "L-serine catabolic process" evidence=ISO

GO:0006801 "superoxide metabolic process" evidence=IMP

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0019343 "cysteine biosynthetic process via cystathionine" evidence=IEA

GO:0019344 "cysteine biosynthetic process" evidence=IMP

GO:0019346 "transsulfuration" evidence=ISO

GO:0019448 "L-cysteine catabolic process" evidence=ISO

GO:0019899 "enzyme binding" evidence=ISO

GO:0020037 "heme binding" evidence=ISO

GO:0021587 "cerebellum morphogenesis" evidence=IMP

GO:0030170 "pyridoxal phosphate binding" evidence=ISO

GO:0030823 "regulation of cGMP metabolic process" evidence=IMP

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0043418 "homocysteine catabolic process" evidence=ISO

GO:0043506 "regulation of JUN kinase activity" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0050667 "homocysteine metabolic process" evidence=ISO;IMP

GO:0050880 "regulation of blood vessel size" evidence=IMP

GO:0051593 "response to folic acid" evidence=IMP

GO:0060135 "maternal process involved in female pregnancy" evidence=IMP

GO:0060351 "cartilage development involved in endochondral bone morphogenesis" evidence=IMP

GO:0070814 "hydrogen sulfide biosynthetic process" evidence=ISO

GO:0071456 "cellular response to hypoxia" evidence=ISO

GO:0072341 "modified amino acid binding" evidence=ISO

UNIPROTKB|F1MEW4 CBS "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
 Identities = 157/298 (52%), Positives = 205/298 (68%)

Query:    42 AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXX 101
             AKCEF N  GS+KDR + RMIEDAE  G +KPG TI+EP+SGNTGIGLA+ AA+KGY   
Sbjct:   109 AKCEFFNAGGSVKDRISLRMIEDAEREGTIKPGDTIIEPTSGNTGIGLALAAAVKGYRCI 168

Query:   102 XXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
                           ++ALGA+I+RT  +  +D PE  +  A R+ +++ N+ +LDQ+RN 
Sbjct:   169 IVMPEKMSTEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLRNEIPNSHILDQYRNA 228

Query:   162 NNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGSI 221
             +NPL+HY+ TAEEIL+   G++DM+V             RK+KEKCP CK+VG DP GSI
Sbjct:   229 SNPLAHYDITAEEILQQCDGRLDMLVASAGTGGTITGVARKLKEKCPGCKIVGVDPEGSI 288

Query:   222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
             LA+P+ LN     Q +Y EVEGIGY F  T LDR V+D+W K  D++ F  AR LI  EG
Sbjct:   289 LAEPEELNQT--EQTAY-EVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFAFARMLIAQEG 345

Query:   282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAE 339
             LL GGSSG+AM VA +AA+ L+  QRCVVIL D VRNY++KF+SD+WM++KGF+ E E
Sbjct:   346 LLCGGSSGSAMSVAVKAAQELQEGQRCVVILPDSVRNYMSKFLSDKWMLQKGFMKEEE 403

GO:0072341 "modified amino acid binding" evidence=IEA

GO:0060351 "cartilage development involved in endochondral bone morphogenesis" evidence=IEA

GO:0060135 "maternal process involved in female pregnancy" evidence=IEA

GO:0051593 "response to folic acid" evidence=IEA

GO:0050880 "regulation of blood vessel size" evidence=IEA

GO:0043506 "regulation of JUN kinase activity" evidence=IEA

GO:0043418 "homocysteine catabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0030823 "regulation of cGMP metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0021587 "cerebellum morphogenesis" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0019448 "L-cysteine catabolic process" evidence=IEA

GO:0006801 "superoxide metabolic process" evidence=IEA

GO:0006565 "L-serine catabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0004122 "cystathionine beta-synthase activity" evidence=IEA

GO:0001974 "blood vessel remodeling" evidence=IEA

GO:0001958 "endochondral ossification" evidence=IEA

GO:0019343 "cysteine biosynthetic process via cystathionine" evidence=IEA

GO:0006535 "cysteine biosynthetic process from serine" evidence=IEA

ZFIN|ZDB-GENE-050417-367 cbsa "cystathionine-beta-synthase a" [Danio rerio (taxid:7955)]

 Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
 Identities = 164/323 (50%), Positives = 215/323 (66%)

Query:    18 PTVPGKV---PLLPQSKQGSILLPTTD--AKCEFMNPTGSLKDRAAWRMIEDAETAGVLK 72
             P + GK+   PL+  +K   I     +  AKCEF N  GS+KDR + RM+EDAE  G+L 
Sbjct:    89 PNILGKIGDTPLVHINKISKIFGLKCELLAKCEFFNAGGSVKDRISLRMVEDAEREGILN 148

Query:    73 PGYTIVEPSSGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAKIIRTQNDKSY 132
             PG TI+EP+SGNTGIGLA+ AA+KGY                 ++ALGA+I+RT     +
Sbjct:   149 PGDTIIEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSMEKVDVLRALGAEIVRTPTSARF 208

Query:   133 DHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLXXXX 192
             D PE  +  A R+ +++ N+ +LDQ+RNP+NPL+HY+TTAEEIL    GKVDM+V     
Sbjct:   209 DSPESHVGVAWRLKNEIPNSHILDQYRNPSNPLAHYDTTAEEILEQCDGKVDMLVAGAGT 268

Query:   193 XXXXXXXXRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATT 252
                     RK+KEKCP+ K+V  DP GSILA+P  LN   +NQ  Y EVEGIGY F  T 
Sbjct:   269 GGTITGIARKLKEKCPNIKIVAVDPEGSILAEPDELNRTDKNQ--Y-EVEGIGYDFIPTV 325

Query:   253 LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVIL 312
             LDR+++D+W K  D+++F MAR LI+ EGLL GGSSGTAM  A + AK L+  QRCVVIL
Sbjct:   326 LDRSLVDKWYKSKDEESFAMARMLIRDEGLLCGGSSGTAMAAAVKFAKELKEGQRCVVIL 385

Query:   313 ADGVRNYLTKFISDEWMIEKGFL 335
              D +RNY++KF+SD+WM +KGFL
Sbjct:   386 PDSIRNYMSKFLSDKWMFQKGFL 408

GO:0004122 "cystathionine beta-synthase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0019343 "cysteine biosynthetic process via cystathionine" evidence=IEA

GO:0006535 "cysteine biosynthetic process from serine" evidence=IEA

GO:0004124 "cysteine synthase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0019344 "cysteine biosynthetic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P63870	CYSK_STAAM	2, ., 5, ., 1, ., 4, 7	0.3922	0.6534	0.8516	yes	N/A
P63871	CYSK_STAAN	2, ., 5, ., 1, ., 4, 7	0.3922	0.6534	0.8516	yes	N/A
P63872	CYSK_STAAW	2, ., 5, ., 1, ., 4, 7	0.3922	0.6534	0.8516	yes	N/A
Q9ZMW6	CYSM_HELPJ	2, ., 5, ., 1, ., 4, 7	0.3578	0.6658	0.8819	yes	N/A
Q7D8W0	Y1077_MYCTU	4, ., 2, ., 1, ., 2, 2	0.4328	0.7128	0.6206	yes	N/A
O34476	CYSM_BACSU	2, ., 5, ., 1, ., 4, 7	0.4013	0.6732	0.8745	yes	N/A
P32232	CBS_RAT	4, ., 2, ., 1, ., 2, 2	0.5945	0.7252	0.5222	yes	N/A
P47999	CYSKP_ARATH	2, ., 5, ., 1, ., 4, 7	0.3964	0.6707	0.6913	yes	N/A
O59701	CYSK1_SCHPO	2, ., 5, ., 1, ., 4, 7	0.3993	0.7178	0.8262	yes	N/A
P35520	CBS_HUMAN	4, ., 2, ., 1, ., 2, 2	0.5728	0.7376	0.5408	yes	N/A
Q6GJF8	CYSK_STAAR	2, ., 5, ., 1, ., 4, 7	0.3922	0.6534	0.8516	yes	N/A
Q6GBX5	CYSK_STAAS	2, ., 5, ., 1, ., 4, 7	0.3922	0.6534	0.8516	yes	N/A
Q5HIG2	CYSK_STAAC	2, ., 5, ., 1, ., 4, 7	0.3922	0.6534	0.8516	yes	N/A
P56067	CYSM_HELPY	2, ., 5, ., 1, ., 4, 7	0.3649	0.6658	0.8790	yes	N/A
Q8CMT6	CYSK_STAES	2, ., 5, ., 1, ., 4, 7	0.3886	0.6534	0.8516	yes	N/A
P71128	CYSM_CAMJE	2, ., 5, ., 1, ., 4, 7	0.37	0.7004	0.9464	yes	N/A
Q7DDL5	CYSK_NEIMB	2, ., 5, ., 1, ., 4, 7	0.3831	0.7277	0.9483	yes	N/A
P46794	CBS_DICDI	4, ., 2, ., 1, ., 2, 2	0.5405	0.8019	0.6506	yes	N/A
P32582	CBS_YEAST	4, ., 2, ., 1, ., 2, 2	0.4587	0.7747	0.6173	yes	N/A
Q91WT9	CBS_MOUSE	4, ., 2, ., 1, ., 2, 2	0.5912	0.7252	0.5222	yes	N/A
Q9N0V7	CBS_RABIT	4, ., 2, ., 1, ., 2, 2	0.5771	0.7301	0.5353	yes	N/A
Q5HRP1	CYSK_STAEQ	2, ., 5, ., 1, ., 4, 7	0.3886	0.6534	0.8516	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.2.1	0.766
4th Layer	4.2.1.22	0.824

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	404
TIGR01137	454	TIGR01137, cysta_beta, cystathionine beta-synthase	1e-144
cd01561	291	cd01561, CBS_like, CBS_like: This subgroup include	1e-128
COG0031	300	COG0031, CysK, Cysteine synthase [Amino acid trans	1e-114
TIGR01136	299	TIGR01136, cysKM, cysteine synthase	9e-93
TIGR01139	298	TIGR01139, cysK, cysteine synthase A	3e-90
PRK10717	330	PRK10717, PRK10717, cysteine synthase A; Provision	2e-89
cd00640	244	cd00640, Trp-synth-beta_II, Tryptophan synthase be	8e-69
TIGR03945	304	TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate bio	8e-68
PRK11761	296	PRK11761, cysM, cysteine synthase B; Provisional	3e-67
pfam00291	295	pfam00291, PALP, Pyridoxal-phosphate dependent enz	1e-64
PLN02565	322	PLN02565, PLN02565, cysteine synthase	9e-63
PLN02556	368	PLN02556, PLN02556, cysteine synthase/L-3-cyanoala	7e-60
PLN00011	323	PLN00011, PLN00011, cysteine synthase	4e-59
TIGR01138	290	TIGR01138, cysM, cysteine synthase B	8e-59
PLN03013	429	PLN03013, PLN03013, cysteine synthase	1e-55
PLN02356	423	PLN02356, PLN02356, phosphateglycerate kinase	9e-40
COG1171	347	COG1171, IlvA, Threonine dehydratase [Amino acid t	9e-21
cd01562	304	cd01562, Thr-dehyd, Threonine dehydratase: The fir	4e-18
COG0498	411	COG0498, ThrC, Threonine synthase [Amino acid tran	5e-17
TIGR01127	380	TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, m	5e-13
cd01563	324	cd01563, Thr-synth_1, Threonine synthase is a pyri	1e-12
PRK06815	317	PRK06815, PRK06815, hypothetical protein; Provisio	3e-11
PRK12483	521	PRK12483, PRK12483, threonine dehydratase; Reviewe	2e-10
PRK06382	406	PRK06382, PRK06382, threonine dehydratase; Provisi	2e-10
TIGR01124	499	TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, b	6e-10
PRK08526	403	PRK08526, PRK08526, threonine dehydratase; Provisi	9e-10
PRK05638	442	PRK05638, PRK05638, threonine synthase; Validated	1e-09
PRK06608	338	PRK06608, PRK06608, threonine dehydratase; Provisi	2e-09
PRK08198	404	PRK08198, PRK08198, threonine dehydratase; Provisi	2e-09
TIGR00260	328	TIGR00260, thrC, threonine synthase	3e-09
PRK06381	319	PRK06381, PRK06381, threonine synthase; Validated	4e-09
PRK07048	321	PRK07048, PRK07048, serine/threonine dehydratase;	5e-09
PRK08329	347	PRK08329, PRK08329, threonine synthase; Validated	2e-08
PRK06450	338	PRK06450, PRK06450, threonine synthase; Validated	3e-08
PRK08638	333	PRK08638, PRK08638, threonine dehydratase; Validat	5e-08
PLN02970	328	PLN02970, PLN02970, serine racemase	6e-08
PLN02550	591	PLN02550, PLN02550, threonine dehydratase	7e-08
TIGR02079	409	TIGR02079, THD1, threonine dehydratase	9e-08
PRK06260	397	PRK06260, PRK06260, threonine synthase; Validated	1e-07
PRK06352	351	PRK06352, PRK06352, threonine synthase; Validated	2e-07
PRK08246	310	PRK08246, PRK08246, threonine dehydratase; Provisi	6e-07
PRK09224	504	PRK09224, PRK09224, threonine dehydratase; Reviewe	9e-07
PRK06721	352	PRK06721, PRK06721, threonine synthase; Reviewed	2e-06
PRK08197	394	PRK08197, PRK08197, threonine synthase; Validated	4e-06
PRK08639	420	PRK08639, PRK08639, threonine dehydratase; Validat	6e-06
TIGR02991	317	TIGR02991, ectoine_eutB, ectoine utilization prote	6e-05
PRK07476	322	PRK07476, eutB, threonine dehydratase; Provisional	1e-04
PRK08206	399	PRK08206, PRK08206, diaminopropionate ammonia-lyas	2e-04
cd01561	291	cd01561, CBS_like, CBS_like: This subgroup include	3e-04
PRK06110	322	PRK06110, PRK06110, hypothetical protein; Provisio	0.002
TIGR01747	376	TIGR01747, diampropi_NH3ly, diaminopropionate ammo	0.003
PRK08813	349	PRK08813, PRK08813, threonine dehydratase; Provisi	0.003

>gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase

 Score =  416 bits (1071), Expect = e-144
 Identities = 178/317 (56%), Positives = 227/317 (71%), Gaps = 4/317 (1%)

Query: 22  GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
           G  PL+  +K    +     AKCEF NP GS+KDR A RMIEDAE +G LKPG TI+EP+
Sbjct: 10  GNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGDTIIEPT 69

Query: 82  SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAG 141
           SGNTGIGLA+VAAIKGYK ++V+P KMS EKV  +KALGA+I+RT    ++D PE  I  
Sbjct: 70  SGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGV 129

Query: 142 AHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGR 201
           A R+  ++  A +LDQ+ NP+NPL+HY+ T  EIL    GK+DM V G GTGGT +GI R
Sbjct: 130 AKRLVREIPGAHILDQYNNPSNPLAHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIAR 189

Query: 202 KIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQW 261
            +KE  P C++VGADP GSILAQP++LN     +  Y +VEGIGY F  T LDR V+D+W
Sbjct: 190 YLKESNPKCRIVGADPEGSILAQPENLNKT--GRTPY-KVEGIGYDFIPTVLDRKVVDEW 246

Query: 262 GKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPD-QRCVVILADGVRNYL 320
            K  DK++F MARRLIK EGLLVGGSSG+A+  A +AA+    + Q  VV+L D +RNY+
Sbjct: 247 IKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAALKAAEDELTEDQVIVVLLPDSIRNYM 306

Query: 321 TKFISDEWMIEKGFLDE 337
           TKF++DEWM + GFLD+
Sbjct: 307 TKFLNDEWMKDNGFLDD 323

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven [Amino acid biosynthesis, Serine family]. Length = 454

>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase

 Score =  370 bits (953), Expect = e-128
 Identities = 142/280 (50%), Positives = 182/280 (65%), Gaps = 9/280 (3%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
           AK EF NP GS+KDR A  MIEDAE  G+LKPG TI+EP+SGNTGIGLAMVAA KGY+ +
Sbjct: 21  AKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTTIIEPTSGNTGIGLAMVAAAKGYRFI 80

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
           +VMP  MS+EK   ++ALGA++I T   +  D  +G IA A  +A++  NA  L+QF NP
Sbjct: 81  IVMPETMSEEKRKLLRALGAEVILTPEAE-ADGMKGAIAKARELAAETPNAFWLNQFENP 139

Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221
            NP +HYETTA EI     GKVD  V G GTGGT +G+ R +KEK P+ ++VG DP GS+
Sbjct: 140 ANPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSV 199

Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
           L                +++EGIG  F    LDR++ID+  +  D++ F MARRL + EG
Sbjct: 200 LFSGG--------PPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEAFAMARRLAREEG 251

Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT 321
           LLVGGSSG A+  A + AK L P +  V IL D    YL+
Sbjct: 252 LLVGGSSGAAVAAALKLAKRLGPGKTIVTILPDSGERYLS 291

CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine. Length = 291

>gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism]

 Score =  336 bits (863), Expect = e-114
 Identities = 131/282 (46%), Positives = 173/282 (61%), Gaps = 12/282 (4%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
           AK E  NP GS+KDR A  MIEDAE  G+LKPG TIVE +SGNTGI LAMVAA KGY+++
Sbjct: 30  AKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIALAMVAAAKGYRLI 89

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKN-AVVLDQFRN 160
           +VMP  MS+E+   ++ALGA++I T         +G I  A  +A+++   AV L+QF N
Sbjct: 90  IVMPETMSQERRKLLRALGAEVILTPGAPGNM--KGAIERAKELAAEIPGYAVWLNQFEN 147

Query: 161 PNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220
           P NP +HYETT  EI + T GKVD  V G GTGGT +G+ R +KE+ P+ ++V  DP GS
Sbjct: 148 PANPEAHYETTGPEIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGS 207

Query: 221 ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSE 280
           +L                 ++EGIG  F    LD ++ID+  +  D++    ARRL + E
Sbjct: 208 VLLSGGEGPH---------KIEGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREE 258

Query: 281 GLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK 322
           GLLVG SSG A+  A + AK L   +  V IL D    YL+K
Sbjct: 259 GLLVGISSGAALAAALKLAKELPAGKTIVTILPDSGERYLSK 300

Length = 300

>gnl|CDD|233286 TIGR01136, cysKM, cysteine synthase

 Score =  280 bits (719), Expect = 9e-93
 Identities = 126/282 (44%), Positives = 174/282 (61%), Gaps = 14/282 (4%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
           AK E  NP+GS+KDR A  MIEDAE  G+LKPG TI+E +SGNTGI LAMVAA KGYK++
Sbjct: 26  AKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGDTIIEATSGNTGIALAMVAAAKGYKLI 85

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
           + MP  MS E+   ++A GA++I T  ++     +G I  A  +A++    V+LDQF NP
Sbjct: 86  LTMPETMSLERRKLLRAYGAELILTPAEEGM---KGAIDKAEELAAETNKYVMLDQFENP 142

Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADP-FGS 220
            NP +HY+TT  EI RDT G++D  V G GTGGT +G+GR +KE+ P+ K+V  +P    
Sbjct: 143 ANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESP 202

Query: 221 ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSE 280
           +L+  +            ++++GIG  F    LD ++ID+     D+D    ARRL + E
Sbjct: 203 VLSGGEPGP---------HKIQGIGAGFIPKILDLSLIDEVITVSDEDAIETARRLAREE 253

Query: 281 GLLVGGSSGTAMHVACQAAKSLR-PDQRCVVILADGVRNYLT 321
           G+LVG SSG A+  A + AK L   D+  V IL D    YL+
Sbjct: 254 GILVGISSGAAVAAALKLAKRLENADKVIVAILPDTGERYLS 295

This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff [Amino acid biosynthesis, Serine family]. Length = 299

>gnl|CDD|233288 TIGR01139, cysK, cysteine synthase A

 Score =  274 bits (702), Expect = 3e-90
 Identities = 126/284 (44%), Positives = 169/284 (59%), Gaps = 18/284 (6%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
            K E  NP+GS+KDR A  MI DAE  G+LKPG TIVEP+SGNTGI LAMVAA +GYK++
Sbjct: 25  VKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKTIVEPTSGNTGIALAMVAAARGYKLI 84

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNA-VVLDQFRN 160
           + MP  MS E+   +KA GA+++ T   +     +G IA A  IA+   N+  +L QF N
Sbjct: 85  LTMPETMSIERRKLLKAYGAELVLTPGAEGM---KGAIAKAEEIAASTPNSYFMLQQFEN 141

Query: 161 PNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220
           P NP  H +TT  EI RDT GK+D  V G GTGGT +G+G  +KE+ P+ K+V  +P  S
Sbjct: 142 PANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAES 201

Query: 221 IL---AQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLI 277
            +    +P             ++++GIG  F    L+R+VID+     D++    ARRL 
Sbjct: 202 PVLSGGKPGP-----------HKIQGIGAGFIPKNLNRSVIDEVITVSDEEAIETARRLA 250

Query: 278 KSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT 321
             EG+LVG SSG A+  A + AK   PD+  VVIL      YL+
Sbjct: 251 AEEGILVGISSGAAVAAALKLAKRPEPDKLIVVILPSTGERYLS 294

This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate [Amino acid biosynthesis, Serine family]. Length = 298

>gnl|CDD|182672 PRK10717, PRK10717, cysteine synthase A; Provisional

 Score =  273 bits (700), Expect = 2e-89
 Identities = 126/306 (41%), Positives = 170/306 (55%), Gaps = 24/306 (7%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
            K EF+NP GS+KDRAA  +I DAE  G+LKPG TIVE ++GNTGIGLA+VAA +GYK V
Sbjct: 32  GKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGGTIVEGTAGNTGIGLALVAAARGYKTV 91

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQM-----KNAVVLD 156
           +VMP   S+EK   ++ALGA+++       Y +P   + GA R+A ++       A+  +
Sbjct: 92  IVMPETQSQEKKDLLRALGAELVLVPA-APYANPNNYVKGAGRLAEELVASEPNGAIWAN 150

Query: 157 QFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGAD 216
           QF NP N  +HYETT  EI   T GKVD  V   GTGGT +G+ R +KE  P  K+V AD
Sbjct: 151 QFDNPANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLAD 210

Query: 217 PFGSILAQPQSLNDVPENQISYNEV--------EGIGYSFAATTLDRNVIDQWGKCGDKD 268
           P GS L           +     E+        EGIG       L+   ID   +  D++
Sbjct: 211 PTGSALY----------SYYKTGELKAEGSSITEGIGQGRITANLEGAPIDDAIRIPDEE 260

Query: 269 TFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEW 328
               A RL++ EGL +GGSSG  +  A + A+ L P    V IL D    Y +K  + ++
Sbjct: 261 ALSTAYRLLEEEGLCLGGSSGINVAAALRLARELGPGHTIVTILCDSGERYQSKLFNPDF 320

Query: 329 MIEKGF 334
           + EKG 
Sbjct: 321 LREKGL 326

Length = 330

>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions

 Score =  216 bits (554), Expect = 8e-69
 Identities = 93/275 (33%), Positives = 123/275 (44%), Gaps = 50/275 (18%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
            K EF+NPTGS KDR A  +I  AE  G   P   I+E + GNTGI LA  AA  G K  
Sbjct: 19  LKLEFLNPTGSFKDRGALNLILLAEEEG-KLPKGVIIESTGGNTGIALAAAAARLGLKCT 77

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
           +VMP   S EKV  M+ALGA+++    D      +  IA A  +A +   A  ++QF NP
Sbjct: 78  IVMPEGASPEKVAQMRALGAEVVLVPGD-----FDDAIALAKELAEEDPGAYYVNQFDNP 132

Query: 162 NNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220
            N      T   EIL   GG K D +V+  G GG  +GI R +KE  P+ K++G +P   
Sbjct: 133 ANIAGQG-TIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP--- 188

Query: 221 ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSE 280
                                                  +     D++     R L + E
Sbjct: 189 ---------------------------------------EVVTVSDEEALEAIRLLAREE 209

Query: 281 GLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADG 315
           G+LV  SS  A+  A + AK L   +  VVIL  G
Sbjct: 210 GILVEPSSAAALAAALKLAKKLGKGKTVVVILTGG 244

This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehyd catalyzes the conversion of L- or D-serine to pyruvate and ammonia. Thr-dehyd is active as a homodimer and catalyzes the conversion of L-threonine to 2-oxobutanoate and ammonia. DAL is also a homodimer and catalyzes the alpha, beta-elimination reaction of both L- and D-alpha, beta-diaminopropionate to form pyruvate and ammonia. Thr-synth catalyzes the formation of threonine and inorganic phosphate from O-phosphohomoserine. Length = 244

>gnl|CDD|234409 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate biosynthesis protein SbnA

 Score =  216 bits (553), Expect = 8e-68
 Identities = 99/289 (34%), Positives = 149/289 (51%), Gaps = 13/289 (4%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
           AK E  NP GS+KDR A  ++E A   G + PG TI+E SSGN GI LAM+ A KG + +
Sbjct: 26  AKLEGFNPGGSIKDRPALYILEAAIKRGRITPGTTIIESSSGNLGIALAMICAYKGLRFI 85

Query: 102 VVMPMKMSKEKVYTMKALGAKIIR-TQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRN 160
            V+   +S + +  ++A GA++ + T+ D++  +    IA    + + + +A   +Q+ N
Sbjct: 86  CVVDPNISPQNLKLLRAYGAEVEKVTEPDETGGYLGTRIARVRELLASIPDAYWPNQYAN 145

Query: 161 PNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220
           P+NP +HY  T  EI R     +D + +G  T GT  G  R+++E+ P+ K++  D  GS
Sbjct: 146 PDNPRAHYHGTGREIARAF-PPLDYLFVGVSTTGTLMGCSRRLRERGPNTKVIAVDAVGS 204

Query: 221 -ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKS 279
            I   P     +P          G+G S     LD ++ID      + DT    RRL + 
Sbjct: 205 VIFGGPPGRRHIP----------GLGASVVPELLDESLIDDVVHVPEYDTVAGCRRLARR 254

Query: 280 EGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEW 328
           EG+L GGSSGT +    +    + P    V IL D    YL    +DEW
Sbjct: 255 EGILAGGSSGTVVAAIKRLLPRIPPGSTVVAILPDRGERYLDTVYNDEW 303

Members of this family include SbnA, a protein of the staphyloferrin B biosynthesis operon of Staphylococcus aureus. SbnA and SbnB together appear to synthesize 2,3-diaminopropionate, a precursor of certain siderophores and other secondary metabolites. SbnA is a pyridoxal phosphate-dependent enzyme [Cellular processes, Biosynthesis of natural products]. Length = 304

>gnl|CDD|236972 PRK11761, cysM, cysteine synthase B; Provisional

 Score =  215 bits (549), Expect = 3e-67
 Identities = 126/313 (40%), Positives = 170/313 (54%), Gaps = 48/313 (15%)

Query: 22  GKVPL-----LPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYT 76
           G  PL     LP  +  +IL     AK E  NP GS+KDR A  MI  AE  G +KPG T
Sbjct: 11  GNTPLVKLQRLPPDRGNTIL-----AKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGDT 65

Query: 77  IVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPE 136
           ++E +SGNTGI LAM+AAIKGY+M ++MP  MS+E+   M+A GA++I    +      +
Sbjct: 66  LIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKE------Q 119

Query: 137 GMIAGAHRIASQMKNA---VVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTG 193
           GM  GA  +A QM+      VLDQF NP+NPL+HYETT  EI R T G++   V   GT 
Sbjct: 120 GM-EGARDLALQMQAEGEGKVLDQFANPDNPLAHYETTGPEIWRQTEGRITHFVSSMGTT 178

Query: 194 GTASGIGRKIKEKCPSCKLVGADPF-GS----ILAQPQSLNDVPENQISYNEVEGIGYSF 248
           GT  G+ R +KE+ P+ ++VG  P  GS    I   P+           Y  +  I   F
Sbjct: 179 GTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPGIRRWPE----------EY--LPKI---F 223

Query: 249 AATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRC 308
            A+ +DR V+D       ++     RRL + EG+  G SSG A+  A + A+   P+   
Sbjct: 224 DASRVDR-VLD----VSQQEAENTMRRLAREEGIFCGVSSGGAVAAALRIAREN-PNAVI 277

Query: 309 VVILAD-GVRNYL 320
           V I+ D G R YL
Sbjct: 278 VAIICDRGDR-YL 289

Length = 296

>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme

 Score =  208 bits (530), Expect = 1e-64
 Identities = 93/298 (31%), Positives = 138/298 (46%), Gaps = 20/298 (6%)

Query: 24  VPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSG 83
           V L        + L     K E +NPTGS KDR A  ++  A      + G T+VE SSG
Sbjct: 11  VRLPSPLLGARVYL-----KLESLNPTGSFKDRGAAYLLLRAL-----ERGATVVEASSG 60

Query: 84  NTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAH 143
           NTG  LA  AA  G K+ +V+P   S  K+  M+ALGA++I   ++  YD    +   A 
Sbjct: 61  NTGRALAAAAARLGLKVTIVVPEGASPGKLLLMRALGAEVILVVSEGDYDDALELAEEAA 120

Query: 144 RIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTG-GKVDMIVLGCGTGGTASGIGRK 202
            + +     + L Q+ NP N ++ Y+T   EIL   G G  D +V+  G GG A+GI R 
Sbjct: 121 ELLAAYDGPIPLGQYNNP-NVIAGYKTIGLEILEQLGQGDPDAVVVPVGGGGLAAGIARG 179

Query: 203 IKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSF-----AATTLDRNV 257
           +KE  P  +++G +P G+     +SL            + G+G         A  L    
Sbjct: 180 LKELGPGIRVIGVEPEGAPAL-ARSLEAGRRVPKPT-TIAGLGPGIPLDGELALELIDEY 237

Query: 258 IDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLR-PDQRCVVILAD 314
           +       D++     R L + EG+LV  SS  A+  A + A+      +R VV+L  
Sbjct: 238 VGDVYAVSDEEALEAIRLLARREGILVEPSSAAALAAALRLAELELGKGKRVVVVLTG 295

Members of this family are all pyridoxal-phosphate dependent enzymes. This family includes: serine dehydratase EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16, tryptophan synthase beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8 P11096, cystathionine beta-synthase EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4. Length = 295

>gnl|CDD|166206 PLN02565, PLN02565, cysteine synthase

 Score =  204 bits (520), Expect = 9e-63
 Identities = 115/293 (39%), Positives = 165/293 (56%), Gaps = 14/293 (4%)

Query: 22  GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTI-VEP 80
           GK PL+  +      +    AK E M P  S+KDR  + MI DAE  G++KPG ++ +EP
Sbjct: 14  GKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEP 73

Query: 81  SSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIA 140
           +SGNTGIGLA +AA KGYK+++ MP  MS E+   + A GA+++ T   K     +G + 
Sbjct: 74  TSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGM---KGAVQ 130

Query: 141 GAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIG 200
            A  I ++  N+ +L QF NP NP  HYETT  EI + TGGKVD  V G GTGGT +G G
Sbjct: 131 KAEEILAKTPNSYILQQFENPANPKIHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGAG 190

Query: 201 RKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQ 260
           + +KE+ P  KL G +P  S +        +   +   ++++GIG  F    LD +++D+
Sbjct: 191 KYLKEQNPDIKLYGVEPVESAV--------LSGGKPGPHKIQGIGAGFIPGVLDVDLLDE 242

Query: 261 WGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILA 313
             +    +    A+ L   EGLLVG SSG A   A + AK  RP+    +I+ 
Sbjct: 243 VVQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIAK--RPENAGKLIVV 293

Length = 322

>gnl|CDD|178171 PLN02556, PLN02556, cysteine synthase/L-3-cyanoalanine synthase

 Score =  198 bits (504), Expect = 7e-60
 Identities = 120/328 (36%), Positives = 173/328 (52%), Gaps = 29/328 (8%)

Query: 22  GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYT-IVEP 80
           GK PL+  +K          AK E   PT S+KDR A  MIEDAE   ++ PG T ++EP
Sbjct: 58  GKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEP 117

Query: 81  SSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM-- 138
           +SGN GI LA +AA+KGYKM++ MP   S E+  TM+A GA+++ T      D  +GM  
Sbjct: 118 TSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLT------DPTKGMGG 171

Query: 139 -IAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTAS 197
            +  A+ +     +A +L QF NP N   H+ETT  EI  DT G+VD+ V+G G+GGT S
Sbjct: 172 TVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGGTVS 231

Query: 198 GIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNV 257
           G+G+ +K K P+ K+ G +P     A+   LN     +   + + G G  F    LD +V
Sbjct: 232 GVGKYLKSKNPNVKIYGVEP-----AESNVLNG---GKPGPHHITGNGVGFKPDILDMDV 283

Query: 258 IDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQR---CVVILAD 314
           +++  +   +D   MAR L   EGL+VG SSG     A + AK   P+ +    V +   
Sbjct: 284 MEKVLEVSSEDAVNMARELALKEGLMVGISSGANTVAALRLAK--MPENKGKLIVTVHPS 341

Query: 315 GVRNYLTKFISDEWMIEKGFLDEAEELE 342
               YL+  +  E         EAE ++
Sbjct: 342 FGERYLSSVLFQE------LRKEAENMQ 363

Length = 368

>gnl|CDD|177651 PLN00011, PLN00011, cysteine synthase

 Score =  194 bits (495), Expect = 4e-59
 Identities = 112/284 (39%), Positives = 160/284 (56%), Gaps = 17/284 (5%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPG-YTIVEPSSGNTGIGLAMVAAIKGYKM 100
           AK E M P  S+KDR A+ MI+DAE  G++ PG  T++E ++GNTGIGLA + A +GYK+
Sbjct: 36  AKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLACIGAARGYKV 95

Query: 101 VVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRN 160
           ++VMP  MS E+   ++ALGA++  T         +GM+  A  I S+     +  QF N
Sbjct: 96  ILVMPSTMSLERRIILRALGAEVHLTDQSIGL---KGMLEKAEEILSKTPGGYIPQQFEN 152

Query: 161 PNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220
           P NP  HY TT  EI RD+ GKVD++V G GTGGTA+G+G+ +KEK    K+   +P  S
Sbjct: 153 PANPEIHYRTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVES 212

Query: 221 ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSE 280
            +        +   Q   + ++GIG       LD  ++D+  +   ++    A+ L   E
Sbjct: 213 AV--------LSGGQPGPHLIQGIGSGIIPFNLDLTIVDEIIQVTGEEAIETAKLLALKE 264

Query: 281 GLLVGGSSGTAMHVACQAAKSLRPD---QRCVVILADGVRNYLT 321
           GLLVG SSG A   A + AK  RP+   +  VVI   G   YL+
Sbjct: 265 GLLVGISSGAAAAAALKVAK--RPENAGKLIVVIFPSGGERYLS 306

Length = 323

>gnl|CDD|130208 TIGR01138, cysM, cysteine synthase B

 Score =  193 bits (491), Expect = 8e-59
 Identities = 114/307 (37%), Positives = 162/307 (52%), Gaps = 34/307 (11%)

Query: 22  GKVPLLPQSKQGSILLPTTD----AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTI 77
           G  PL+   +    + P        K E  NP GS+KDR A  MI +AE  G +KPG  +
Sbjct: 7   GNTPLVRLQR----MGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDVL 62

Query: 78  VEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEG 137
           +E +SGNTGI LAM+AA+KGY+M ++MP  MS+E+   M+A GA++I           EG
Sbjct: 63  IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAELILV------TKEEG 116

Query: 138 MIAGAHRIASQMKN---AVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGG 194
           M  GA  +A ++ N     +LDQF NP+NP +HY +T  EI + TGG++   V   GT G
Sbjct: 117 M-EGARDLALELANRGEGKLLDQFNNPDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTG 175

Query: 195 TASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLD 254
           T  G+ R +KE+ P  ++VG  P      +  S+  +      Y  + GI   F A+ +D
Sbjct: 176 TIMGVSRFLKEQNPPVQIVGLQP-----EEGSSIPGIRRWPTEY--LPGI---FDASLVD 225

Query: 255 RNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILAD 314
           R V+D       +D     R L   EG+  G SSG A+  A + A+ L PD   V I+ D
Sbjct: 226 R-VLD----IHQRDAENTMRELAVREGIFCGVSSGGAVAAALRLAREL-PDAVVVAIICD 279

Query: 315 GVRNYLT 321
               YL+
Sbjct: 280 RGDRYLS 286

CysM differs from CysK in that it can also use thiosulfate instead of sulfide, to produce cysteine thiosulfonate instead of cysteine. Alternate name: O-acetylserine (thiol)-lyase [Amino acid biosynthesis, Serine family]. Length = 290

>gnl|CDD|178587 PLN03013, PLN03013, cysteine synthase

 Score =  188 bits (479), Expect = 1e-55
 Identities = 111/285 (38%), Positives = 161/285 (56%), Gaps = 14/285 (4%)

Query: 22  GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTI-VEP 80
           GK P++  +      +    AK E M P  S+KDR  + M+ DAE  G + PG ++ VEP
Sbjct: 122 GKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEP 181

Query: 81  SSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIA 140
           +SGNTGIGLA +AA +GY++++ MP  MS E+   +KA GA+++ T   K      G + 
Sbjct: 182 TSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGM---TGAVQ 238

Query: 141 GAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIG 200
            A  I     +A +L QF NP NP  HYETT  EI  DT GKVD+ V G GTGGT +G+G
Sbjct: 239 KAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVG 298

Query: 201 RKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQ 260
           R IKEK P  +++G +P  S +        +   +   ++++GIG  F    LD+ ++D+
Sbjct: 299 RFIKEKNPKTQVIGVEPTESDI--------LSGGKPGPHKIQGIGAGFIPKNLDQKIMDE 350

Query: 261 WGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPD 305
                 ++    A++L   EGL+VG SSG A   A + AK  RP+
Sbjct: 351 VIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAK--RPE 393

Length = 429

>gnl|CDD|215204 PLN02356, PLN02356, phosphateglycerate kinase

 Score =  146 bits (369), Expect = 9e-40
 Identities = 114/353 (32%), Positives = 163/353 (46%), Gaps = 59/353 (16%)

Query: 43  KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVV 102
           KCEF+NP GS+KDR A ++IE+A  +G L PG  + E S+G+T I LA VA   G K  V
Sbjct: 73  KCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGVVTEGSAGSTAISLATVAPAYGCKCHV 132

Query: 103 VMPMKMSKEKVYTMKALGAKI--IRTQNDKSYDH----------PEGMIAGAHRIASQMK 150
           V+P  ++ EK   ++ALGA +  +R  +    DH              +A   R  S+  
Sbjct: 133 VIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSET- 191

Query: 151 NAVVL---------------------------DQFRNPNNPLSHYETTAEEILRDTGGKV 183
           + + L                           DQF N  N  +HYE T  EI   T G +
Sbjct: 192 DGIHLEKTNGCISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNL 251

Query: 184 DMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSIL--------------AQPQSLN 229
           D  V   GTGGT +G+ R ++EK P+ K    DP GS L              A+ + L 
Sbjct: 252 DAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLK 311

Query: 230 DVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSG 289
           + P + I+    EGIG +          +D   +  DK+   M+R L+K++GL VG SS 
Sbjct: 312 N-PFDTIT----EGIGINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSSSA 366

Query: 290 TAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEELE 342
                A + A+SL P    V IL D    +L+KF   +++ + G    A  LE
Sbjct: 367 MNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKFHDPQYLSQHGLTPTATGLE 419

Length = 423

>gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and metabolism]

 Score = 92.3 bits (230), Expect = 9e-21
 Identities = 52/196 (26%), Positives = 80/196 (40%), Gaps = 9/196 (4%)

Query: 25  PLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGN 84
           PL         L      K E + P GS K R A+  +           G  ++  S+GN
Sbjct: 27  PLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEERAAG--VIAASAGN 84

Query: 85  TGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHR 144
              G+A  A   G K  +VMP    K KV   +  GA++I      ++D        A  
Sbjct: 85  HAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILH--GDNFDDAYAA---AEE 139

Query: 145 IASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIK 204
           +A + +    +  F +P + ++   T A EIL       D + +  G GG  SGI   +K
Sbjct: 140 LAEE-EGLTFVPPFDDP-DVIAGQGTIALEILEQLPDLPDAVFVPVGGGGLISGIATALK 197

Query: 205 EKCPSCKLVGADPFGS 220
              P  K++G +P G+
Sbjct: 198 ALSPEIKVIGVEPEGA 213

Length = 347

>gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen

 Score = 84.1 bits (209), Expect = 4e-18
 Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 31/188 (16%)

Query: 43  KCEFMNPTGSLKDRAAWRMI----EDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
           KCE +  TGS K R A+  +    E+    GV       V  S+GN   G+A  A + G 
Sbjct: 37  KCENLQKTGSFKIRGAYNKLLSLSEEERAKGV-------VAASAGNHAQGVAYAAKLLGI 89

Query: 99  KMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQF 158
              +VMP      KV   +A GA+++     + +D  E   A A  +A +     +    
Sbjct: 90  PATIVMPETAPAAKVDATRAYGAEVVLY--GEDFDEAE---AKARELAEEEGLTFI---- 140

Query: 159 RNPNNPLSHYE------TTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKL 212
               +P    +      T   EIL      +D + +  G GG  +GI   +K   P+ K+
Sbjct: 141 ----HPFDDPDVIAGQGTIGLEILEQV-PDLDAVFVPVGGGGLIAGIATAVKALSPNTKV 195

Query: 213 VGADPFGS 220
           +G +P G+
Sbjct: 196 IGVEPEGA 203

Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions. Length = 304

>gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and metabolism]

 Score = 82.0 bits (203), Expect = 5e-17
 Identities = 77/330 (23%), Positives = 123/330 (37%), Gaps = 52/330 (15%)

Query: 43  KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVV 102
           K    NPTGS KDR    ++  A+  G      TI+  SSGNTG   A  AA  G K+ V
Sbjct: 99  KELGHNPTGSFKDRGMTVLVSLAKELGAK----TILCASSGNTGASAAAYAARAGLKVFV 154

Query: 103 VMPM-KMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQM--KNAVVLDQFR 159
           + P  K+S  K+  M  LGA +I    +  +D        A  +  +   +  ++     
Sbjct: 155 LYPKGKVSPGKLAQMLTLGAHVIAVDGN--FDD-------AQELVKEAANREGLL----- 200

Query: 160 NPNNPLSHY-----ETTAEEILRDTGGKV-DMIVLGCGTGGTASGI------GRKIK--E 205
           +  N ++ Y     +T A EI    G K  D +V+  G GG    I      G  I   +
Sbjct: 201 SAVNSINPYRLEGQKTYAFEIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKID 260

Query: 206 KCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCG 265
           K P+   V A+ F   +   +   + PE   +      IG           + +  G   
Sbjct: 261 KAPNMNGVQAEGFSPGVYAWKEGRETPE---TIAPAMDIGNPSNWERALFALRESGGLAV 317

Query: 266 ---DKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVIL--------AD 314
              D++     + L + EG+L+   S  A+    +  + +      VV++         D
Sbjct: 318 AVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKLREKIIDPDETVVLVLTGHGLKFPD 377

Query: 315 GVRNYLTKFISDEWMIEKGFLDEAEELEEM 344
            V     +        E     E  +LE +
Sbjct: 378 TVEEAPAELAEIP---ELPLRVEDADLEAL 404

Length = 411

>gnl|CDD|130197 TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, medium form

 Score = 69.8 bits (171), Expect = 5e-13
 Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 19/176 (10%)

Query: 43  KCEFMNPTGSLKDRAAW----RMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
           K E +  TGS K R A      + ED    GV       V  S+GN   G+A  A   G 
Sbjct: 20  KLENLQKTGSFKIRGALNKIANLSEDQRQRGV-------VAASAGNHAQGVAYAAKKFGI 72

Query: 99  KMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQF 158
           K V+VMP      KV   K+ GA++I   +D  YD      A A  +A + +  V +  F
Sbjct: 73  KAVIVMPESAPPSKVKATKSYGAEVILHGDD--YDEAY---AFATSLAEE-EGRVFVHPF 126

Query: 159 RNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVG 214
            +    ++   T   EI+ D    VD +++  G GG  SG+    K+  P+ K++G
Sbjct: 127 DDE-FVMAGQGTIGLEIMED-IPDVDTVIVPVGGGGLISGVASAAKQINPNVKVIG 180

A form of threonine dehydratase with two copies of the C-terminal domain pfam00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes [Amino acid biosynthesis, Pyruvate family]. Length = 380

>gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate

 Score = 68.0 bits (167), Expect = 1e-12
 Identities = 57/189 (30%), Positives = 83/189 (43%), Gaps = 18/189 (9%)

Query: 21  PGKVPLLPQSKQGSIL-LPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVE 79
            G  PL+   + G  L       K E +NPTGS KDR     +  A+  GV      +  
Sbjct: 20  EGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGV----KAVAC 75

Query: 80  PSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMI 139
            S+GNT   LA  AA  G K VV +P   +  K+    A GA ++  + +  +D      
Sbjct: 76  ASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEGN--FDD----- 128

Query: 140 AGAHRIASQM--KNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKV-DMIVLGCGTGGTA 196
             A R+  ++  +N + L    NP   L   +T A EI    G +V D +V+  G GG  
Sbjct: 129 --ALRLVRELAEENWIYLSNSLNPYR-LEGQKTIAFEIAEQLGWEVPDYVVVPVGNGGNI 185

Query: 197 SGIGRKIKE 205
           + I +  KE
Sbjct: 186 TAIWKGFKE 194

It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants. Length = 324

>gnl|CDD|180709 PRK06815, PRK06815, hypothetical protein; Provisional

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 75/302 (24%), Positives = 121/302 (40%), Gaps = 40/302 (13%)

Query: 25  PLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMI----EDAETAGVLKPGYTIVEP 80
           PLL Q     + L     KCE +  TGS K R A   +    E     GV       +  
Sbjct: 27  PLLSQHTGCEVYL-----KCEHLQHTGSFKFRGASNKLRLLNEAQRQQGV-------ITA 74

Query: 81  SSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIA 140
           SSGN G G+A+ A + G  + V  P + S  K+  ++ALGA++     D           
Sbjct: 75  SSGNHGQGVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGGD-----ALNAEL 129

Query: 141 GAHRIASQMKNAVVLDQFRNPNNPL---SHYETTAEEILRDTGGKVDMIVLGCGTGGTAS 197
            A R A Q     +     +P N     +   T   E++      +D + +  G GG  S
Sbjct: 130 AARRAAEQQGKVYI-----SPYNDPQVIAGQGTIGMELVEQQ-PDLDAVFVAVGGGGLIS 183

Query: 198 GIGRKIKEKCPSCKLVGADPFGSILAQPQSLN-----DVPENQISYNEVEGIGYSFAATT 252
           GI   +K   P  +++G  P  S      SL      +V E     +   G G    A T
Sbjct: 184 GIATYLKTLSPKTEIIGCWPANSPSLY-TSLEAGEIVEVAEQPTLSDGTAG-GVEPGAIT 241

Query: 253 LD--RNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVV 310
               + +IDQ     +++     R + +++  L+ G++G A+  A + A   +  ++  V
Sbjct: 242 FPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGVALAAALKLAPRYQ-GKKVAV 300

Query: 311 IL 312
           +L
Sbjct: 301 VL 302

Length = 317

>gnl|CDD|237111 PRK12483, PRK12483, threonine dehydratase; Reviewed

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 20/180 (11%)

Query: 43  KCEFMNPTGSLKDRAAW----RMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
           K E + P  S K R A+    R+  +    GV       +  S+GN   G+A+ AA  G 
Sbjct: 57  KREDLQPVFSFKIRGAYNKMARLPAEQLARGV-------ITASAGNHAQGVALAAARLGV 109

Query: 99  KMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIA-SQMKNAVVLDQ 157
           K V+VMP    + KV  ++A G +++   + +S+       A AH +  ++ +    +  
Sbjct: 110 KAVIVMPRTTPQLKVDGVRAHGGEVV--LHGESFPD-----ALAHALKLAEEEGLTFVPP 162

Query: 158 FRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADP 217
           F +P+  ++   T A EILR   G +D I +  G GG  +GI   +K   P  K++G +P
Sbjct: 163 FDDPD-VIAGQGTVAMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEP 221

Length = 521

>gnl|CDD|180550 PRK06382, PRK06382, threonine dehydratase; Provisional

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 57/181 (31%), Positives = 82/181 (45%), Gaps = 25/181 (13%)

Query: 43  KCEFMNPTGSLKDRAAW----RMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
           K E    TGS K R A     ++ ED    GV+         S+GN   G+A  A+I G 
Sbjct: 45  KLENFQKTGSFKSRGAVFKFSKLSEDELRNGVITA-------SAGNHAQGVAYAASINGI 97

Query: 99  KMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQM---KNAVVL 155
              +VMP     +KV  ++A GA +I T  D  YD        AHR A ++   +N   +
Sbjct: 98  DAKIVMPEYTIPQKVNAVEAYGAHVILTGRD--YDE-------AHRYADKIAMDENRTFI 148

Query: 156 DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGA 215
           + F N    +S   T   EI+ D    +D I++  G GG  SGI    K   P+ K++G 
Sbjct: 149 EAF-NDRWVISGQGTIGLEIMEDL-PDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGI 206

Query: 216 D 216
           +
Sbjct: 207 E 207

Length = 406

>gnl|CDD|130194 TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, biosynthetic, long form

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 20/180 (11%)

Query: 43  KCEFMNPTGSLKDRAAWRMI----EDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
           K E + P  S K R A+  +     + +  GV       +  S+GN   G+A  AA  G 
Sbjct: 37  KREDLQPVFSFKLRGAYNKMAQLSPEQKARGV-------IAASAGNHAQGVAFSAARLGL 89

Query: 99  KMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIA-SQMKNAVVLDQ 157
           K ++VMP      KV  ++  G +++   +  ++D      A A  I  SQ K    +  
Sbjct: 90  KALIVMPETTPDIKVDAVRGFGGEVV--LHGANFD-----DAKAKAIELSQEKGLTFIHP 142

Query: 158 FRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADP 217
           F +P   ++   T A EILR     +D + +  G GG A+G+   IK+  P  K++G +P
Sbjct: 143 FDDPL-VIAGQGTLALEILRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEP 201

This model describes a form of threonine ammonia-lyase, a pyridoxal-phosphate dependent enzyme, with two copies of the threonine dehydratase C-terminal domain (pfam00585). Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine. Alternate name: threonine deaminase, threonine dehydratase. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain [Amino acid biosynthesis, Pyruvate family]. Length = 499

>gnl|CDD|181457 PRK08526, PRK08526, threonine dehydratase; Provisional

 Score = 59.7 bits (145), Expect = 9e-10
 Identities = 58/213 (27%), Positives = 88/213 (41%), Gaps = 62/213 (29%)

Query: 25  PLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMI----EDAETAGVLKPGYTIVEP 80
           P L +     + L     K E +  TG+ K R A+  I    E+ +  GV       +  
Sbjct: 27  PFLSKISGAEVYL-----KKENLQITGAYKIRGAYNKIANLSEEQKQHGV-------IAA 74

Query: 81  SSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII---------------- 124
           S+GN   G+A+ A   G K V+VMP      KV   KALGA++I                
Sbjct: 75  SAGNHAQGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGDNYDEAYAFALEY 134

Query: 125 RTQNDKSYDHP---EGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGG 181
             +N+ ++ HP   E ++AG   IA +M     LD+  +                     
Sbjct: 135 AKENNLTFIHPFEDEEVMAGQGTIALEM-----LDEISD--------------------- 168

Query: 182 KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVG 214
            +DM+V+  G GG  SGI    K+  P+ K++G
Sbjct: 169 -LDMVVVPVGGGGLISGIASAAKQINPNIKIIG 200

Length = 403

>gnl|CDD|235539 PRK05638, PRK05638, threonine synthase; Validated

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 43  KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVV 102
           K E  NPTGS +DR A   +           G+ +   S GN    +A  +A  G +  V
Sbjct: 85  KDETRNPTGSFRDRLATVAVSYGLPYA--ANGFIVA--SDGNAAASVAAYSARAGKEAFV 140

Query: 103 VMPMKMSKEKVYTMKALGAKIIRTQND 129
           V+P K+ K K+  M A GAKIIR    
Sbjct: 141 VVPRKVDKGKLIQMIAFGAKIIRYGES 167

Length = 442

>gnl|CDD|235842 PRK06608, PRK06608, threonine dehydratase; Provisional

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 47/192 (24%), Positives = 69/192 (35%), Gaps = 45/192 (23%)

Query: 43  KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVV 102
           K E +  TG+ K R     + + +  G L     IV  S+GN G  +A  + + G K  +
Sbjct: 43  KVESLQKTGAFKVRGVLNHLLELKEQGKLPD--KIVAYSTGNHGQAVAYASKLFGIKTRI 100

Query: 103 VMPMKMSKEKVYTMKALGAKIIRT--------------QNDKSYDHP---EGMIAGAHRI 145
            +P+  SK K       G ++I T              +    Y HP   +  IAGA   
Sbjct: 101 YLPLNTSKVKQQAALYYGGEVILTNTRQEAEEKAKEDEEQGFYYIHPSDSDSTIAGAG-- 158

Query: 146 ASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKE 205
                                   T   E L+  G   D I   CG GG  SG     + 
Sbjct: 159 ------------------------TLCYEALQQLGFSPDAIFASCGGGGLISGTYLAKEL 194

Query: 206 KCPSCKLVGADP 217
             P+  L+G++P
Sbjct: 195 ISPTSLLIGSEP 206

Length = 338

>gnl|CDD|236182 PRK08198, PRK08198, threonine dehydratase; Provisional

 Score = 58.6 bits (143), Expect = 2e-09
 Identities = 56/196 (28%), Positives = 86/196 (43%), Gaps = 32/196 (16%)

Query: 43  KCEFMNPTGSLKDRAAW----RMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
           KCE +  TGS K R A+     + E+    GV       V  S+GN   G+A  A++ G 
Sbjct: 42  KCENLQRTGSFKIRGAYNKIASLSEEERARGV-------VAASAGNHAQGVAYAASLLGI 94

Query: 99  KMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQF 158
           K  +VMP      KV   ++ GA+++   +   YD  E +   A  +A +   A  +   
Sbjct: 95  KATIVMPETAPLSKVKATRSYGAEVVLHGDV--YD--EALAK-AQELAEE-TGATFV--- 145

Query: 159 RNPNNPLSHYE------TTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKL 212
               +P    +      T   EIL D    VD +V+  G GG  SG+   +K   P  ++
Sbjct: 146 ----HPFDDPDVIAGQGTIGLEILEDLPD-VDTVVVPIGGGGLISGVATAVKALRPEVRV 200

Query: 213 VGADPFGSILAQPQSL 228
           +G    G+  A P+SL
Sbjct: 201 IGVQAEGAP-AMPESL 215

Length = 404

>gnl|CDD|232896 TIGR00260, thrC, threonine synthase

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 48/201 (23%), Positives = 74/201 (36%), Gaps = 23/201 (11%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
               F NPT S KDR     +  A   G      T++  S+GNTG   A  A   G K+V
Sbjct: 43  VLELFHNPTLSFKDRGMAVALTKALELGND----TVLCASTGNTGAAAAAYAGKAGVKVV 98

Query: 102 VVMPM-KMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRN 160
           ++ P  K+S  K+       A+++    +  +D        A R+  Q+          +
Sbjct: 99  ILYPAGKISLGKLAQALGYNAEVVAIDGN--FDD-------AQRLVKQLFGDKEALGLNS 149

Query: 161 PNNPLSHYE---TTAEEILRDTGGKV-DMIVLGCGTGGTASGIGRKIKEKCPSCKLVGAD 216
            N+     E   T A E +   G +  D +V+     G    I +  KEK    K  G D
Sbjct: 150 VNSIPYRLEGQKTYAFEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEK----KEGGLD 205

Query: 217 PFGSILA-QPQSLNDVPENQI 236
                   Q +   D+    +
Sbjct: 206 SLPVKRGIQAEGAADIVRAFL 226

Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model [Amino acid biosynthesis, Aspartate family]. Length = 328

>gnl|CDD|235789 PRK06381, PRK06381, threonine synthase; Validated

 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 57/186 (30%), Positives = 78/186 (41%), Gaps = 22/186 (11%)

Query: 21  PGKVPLLPQSKQGSIL-LPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGY-TIV 78
           PG  PLL   K    L L     K E  NPTG+ KDR A   +  A     ++ GY  I 
Sbjct: 13  PGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRA-----MRLGYSGIT 67

Query: 79  EPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM 138
             + GN G  +A  A + G K V+ +P   S  +V  M+  GA+II    D  Y   E  
Sbjct: 68  VGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYGAEIIYV--DGKY---EEA 122

Query: 139 IAGAHRIASQMKNAVVLDQFRNPNNPLSH-----YETTAEEILRDTGGKVDMIVLGCGTG 193
           +  + + A +     + D   NP +  S      Y   A EI    G   D + +  G G
Sbjct: 123 VERSRKFAKENG---IYDA--NPGSVNSVVDIEAYSAIAYEIYEALGDVPDAVAVPVGNG 177

Query: 194 GTASGI 199
            T +GI
Sbjct: 178 TTLAGI 183

Length = 319

>gnl|CDD|235918 PRK07048, PRK07048, serine/threonine dehydratase; Validated

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 49/199 (24%), Positives = 71/199 (35%), Gaps = 59/199 (29%)

Query: 43  KCEFMNPTGSLKDRAAW----RMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
           KCE     G+ K R A+    +   +   AGV       V  SSGN    +A+ A + G 
Sbjct: 44  KCENFQRMGAFKFRGAYNALSQFSPEQRRAGV-------VTFSSGNHAQAIALSARLLGI 96

Query: 99  KMVVVMPMKMSKEKVYTMKALGAKII---RTQNDK-----------------SYDHPEGM 138
              +VMP      KV   +  G +++   R   D+                  YDHP   
Sbjct: 97  PATIVMPQDAPAAKVAATRGYGGEVVTYDRYTEDREEIGRRLAEERGLTLIPPYDHP--- 153

Query: 139 IAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASG 198
               H IA Q                     T A+E+  + G  +D + +  G GG  SG
Sbjct: 154 ----HVIAGQ--------------------GTAAKELFEEVG-PLDALFVCLGGGGLLSG 188

Query: 199 IGRKIKEKCPSCKLVGADP 217
                +   P CK+ G +P
Sbjct: 189 CALAARALSPGCKVYGVEP 207

Length = 321

>gnl|CDD|236244 PRK08329, PRK08329, threonine synthase; Validated

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 24/213 (11%)

Query: 25  PLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGN 84
           P+ P  K+   +      K +++ PTGS KDR  +  +   +  G+ +    +V  SSGN
Sbjct: 63  PITPTVKRSIKVY----FKLDYLQPTGSFKDRGTYVTVAKLKEEGINE----VVIDSSGN 114

Query: 85  TGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHR 144
             + LA+ +  +G K+ V +    SKEK+  +  LGA++   + D+   H E +      
Sbjct: 115 AALSLALYSLSEGIKVHVFVSYNASKEKISLLSRLGAELHFVEGDRMEVHEEAV------ 168

Query: 145 IASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIK 204
             S+  N   +  + NP   L   +T A EI     G  D   +  G+G    GI +  K
Sbjct: 169 KFSKRNNIPYVSHWLNPYF-LEGTKTIAYEIYEQI-GVPDYAFVPVGSGTLFLGIWKGFK 226

Query: 205 E--------KCPSCKLVGADPFGSILAQPQSLN 229
           E        K P    V A+ + S+  + +S N
Sbjct: 227 ELHEMGEISKMPKLVAVQAEGYESLCKRSKSEN 259

Length = 347

>gnl|CDD|180565 PRK06450, PRK06450, threonine synthase; Validated

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 69/290 (23%), Positives = 122/290 (42%), Gaps = 36/290 (12%)

Query: 43  KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVV 102
           K +F+NPTGS KDR +  +I      G+      I E SSGN G  +A   A  G ++ +
Sbjct: 70  KLDFLNPTGSYKDRGSVTLISYLAEKGI----KQISEDSSGNAGASIAAYGAAAGIEVKI 125

Query: 103 VMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPN 162
            +P   S  K+  +++ GA+++R +  +     E +   A        + V+  QFR+  
Sbjct: 126 FVPETASGGKLKQIESYGAEVVRVRGSR-----EDVAKAAENSGYYYASHVLQPQFRDG- 179

Query: 163 NPLSHYETTAEEILRDTGGKV-DMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221
                  T A EI +D   K+ + + +    G    G+    K    S  +        I
Sbjct: 180 -----IRTLAYEIAKDLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVI---SEMPKI 231

Query: 222 LA-QPQSLNDVPE--NQISY---NEVEGIGYSFAATT---LDR--NVIDQWGKCG--DKD 268
           +A Q + ++ +      ISY   ++V  I  +  +T    LD     + ++G+C     +
Sbjct: 232 VAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVSTRPFLLDYMVKALSEYGECIVVSDN 291

Query: 269 TFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRN 318
             + A + +  +GLLV  SS T       A K    +   +V+   G++ 
Sbjct: 292 EIVEAWKELAKKGLLVEYSSATVY----AAYKKYSVNDSVLVLTGSGLKV 337

Length = 338

>gnl|CDD|236317 PRK08638, PRK08638, threonine dehydratase; Validated

 Score = 53.6 bits (129), Expect = 5e-08
 Identities = 56/195 (28%), Positives = 82/195 (42%), Gaps = 30/195 (15%)

Query: 27  LPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIE---DAETA-GVLKPGYTIVEPSS 82
           L +  +G I L     K E M  TGS K R A+  +    DAE   GV       V  S+
Sbjct: 36  LSERCKGEIFL-----KLENMQRTGSFKIRGAFNKLSSLTDAEKRKGV-------VACSA 83

Query: 83  GNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII---RTQNDKSYDHPEGMI 139
           GN   G+A+  A+ G    VVMP    K KV      GA+++      ND         I
Sbjct: 84  GNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGDNFNDT--------I 135

Query: 140 AGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGI 199
           A    I  + +    +  + +P   ++   T   EIL D    VD +++  G GG  +GI
Sbjct: 136 AKVEEIV-EEEGRTFIPPYDDP-KVIAGQGTIGLEILEDL-WDVDTVIVPIGGGGLIAGI 192

Query: 200 GRKIKEKCPSCKLVG 214
              +K   P+  ++G
Sbjct: 193 AVALKSINPTIHIIG 207

Length = 333

>gnl|CDD|215524 PLN02970, PLN02970, serine racemase

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 52/182 (28%), Positives = 75/182 (41%), Gaps = 19/182 (10%)

Query: 43  KCEFMNPTGSLKDRAAWRMIE--DAETA--GVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
           KCE     G+ K R A   I     + A  GV       V  SSGN    LA+ A ++G 
Sbjct: 47  KCECFQKGGAFKFRGACNAIFSLSDDQAEKGV-------VTHSSGNHAAALALAAKLRGI 99

Query: 99  KMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQF 158
              +V+P      KV  +   G  I   +        E   A A R+  Q   AV++  +
Sbjct: 100 PAYIVVPKNAPACKVDAVIRYGGIITWCEPTV-----ESREAVAARVQ-QETGAVLIHPY 153

Query: 159 RNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPF 218
            +    +S   T A E L      +D+I++    GG  SGI    K   PS K++ A+P 
Sbjct: 154 NDGR-VISGQGTIALEFLEQVPE-LDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPK 211

Query: 219 GS 220
           G+
Sbjct: 212 GA 213

Length = 328

>gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase

 Score = 54.2 bits (130), Expect = 7e-08
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 12/176 (6%)

Query: 43  KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVV 102
           K E + P  S K R A+ M+        L  G  ++  S+GN   G+A+ A   G   V+
Sbjct: 129 KREDLQPVFSFKLRGAYNMMAKL-PKEQLDKG--VICSSAGNHAQGVALSAQRLGCDAVI 185

Query: 103 VMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAH-RIASQMKNAVVLDQFRNP 161
            MP+   + K  +++ LGA ++   +  SYD      A A+ +  +  +    +  F +P
Sbjct: 186 AMPVTTPEIKWQSVERLGATVVLVGD--SYDE-----AQAYAKQRALEEGRTFIPPFDHP 238

Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADP 217
           +  ++   T   EI+R   G +  I +  G GG  +GI   +K   P  K++G +P
Sbjct: 239 D-VIAGQGTVGMEIVRQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEP 293

Length = 591

>gnl|CDD|233712 TIGR02079, THD1, threonine dehydratase

 Score = 53.6 bits (129), Expect = 9e-08
 Identities = 49/183 (26%), Positives = 73/183 (39%), Gaps = 17/183 (9%)

Query: 43  KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVV 102
           K E + P  S K R A+  ++    A  L  G  +V  S+GN   G A      G    V
Sbjct: 36  KREDLQPVRSYKIRGAYNFLKQLSDAQ-LAKG--VVCASAGNHAQGFAYACRHLGVHGTV 92

Query: 103 VMPMKMSKEKVYTMKALGA---KIIRTQN--DKSYDHPEGMIAGAHRIASQMKNAVVLDQ 157
            MP    K+K+  +K  G    +II   +  D+         A A     +      +  
Sbjct: 93  FMPATTPKQKIDRVKIFGGEFIEIILVGDTFDQCA-------AAARE-HVEDHGGTFIPP 144

Query: 158 FRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADP 217
           F +P   +    T A EIL     K D +V+  G GG  SG+   +    P  K++G +P
Sbjct: 145 FDDPRI-IEGQGTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEP 203

Query: 218 FGS 220
            G+
Sbjct: 204 EGA 206

This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been charcterized (TIGR01124 and TIGR01127). Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway [Amino acid biosynthesis, Pyruvate family]. Length = 409

>gnl|CDD|235757 PRK06260, PRK06260, threonine synthase; Validated

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 59/174 (33%), Positives = 80/174 (45%), Gaps = 30/174 (17%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKP---GYTIVE-PSSGNTGIGLAMVAAIKG 97
            K E  NPTGS KDR    M     T GV K    G   V   S+GNT   LA  AA  G
Sbjct: 87  VKHEGANPTGSFKDRG---M-----TVGVTKALELGVKTVACASTGNTSASLAAYAARAG 138

Query: 98  YKMVVVMPM-KMSKEKVYTMKAL--GAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVV 154
            K  V++P  K++  K+   +AL  GAK++  + D ++D    M+     +A + K   +
Sbjct: 139 LKCYVLLPAGKVALGKL--AQALLHGAKVL--EVDGNFDDALDMV---VELAKEGK-IYL 190

Query: 155 LDQFRNPNNP--LSHYETTAEEILRDTGGKV-DMIVLGCGTGGTASGIGRKIKE 205
           L+      NP  L   +T   EI    G +V D +VL  G  G  S I +  KE
Sbjct: 191 LNSI----NPFRLEGQKTIGFEIADQLGWEVPDRVVLPVGNAGNISAIWKGFKE 240

Length = 397

>gnl|CDD|180539 PRK06352, PRK06352, threonine synthase; Validated

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 55/193 (28%), Positives = 77/193 (39%), Gaps = 13/193 (6%)

Query: 14  SPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKP 73
           +P      G  PL+P       L  T   K E +NPTGS KDR     +  A+  G    
Sbjct: 19  TPMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEG---- 74

Query: 74  GYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPM-KMSKEKVYTMKALGAKIIRTQNDKSY 132
              ++  S+GNT    A  A   G K  +V+P  K++  K+      GA II  Q +  +
Sbjct: 75  AEAVICASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQGN--F 132

Query: 133 DHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGT 192
           D     +     +A     AV L    NP   L   +T A EI    G   D++ +  G 
Sbjct: 133 DEA---LKSVRELAE--TEAVTLVNSVNPYR-LEGQKTAAFEICEQLGSAPDVLAIPVGN 186

Query: 193 GGTASGIGRKIKE 205
            G  S   +  KE
Sbjct: 187 AGNISAYWKGFKE 199

Length = 351

>gnl|CDD|181319 PRK08246, PRK08246, threonine dehydratase; Provisional

 Score = 50.3 bits (121), Expect = 6e-07
 Identities = 50/179 (27%), Positives = 74/179 (41%), Gaps = 18/179 (10%)

Query: 23  KVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAW-RMIE-DAETAGVLKPGYTIVEP 80
           + P+L     G    P    K E +  TGS K R A+ R++      AGV       V  
Sbjct: 23  RTPVLEADGAGFGPAPVW-LKLEHLQHTGSFKARGAFNRLLAAPVPAAGV-------VAA 74

Query: 81  SSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIA 140
           S GN G+ +A  AA  G    V +P      KV  ++ALGA+++       Y   + + A
Sbjct: 75  SGGNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--EY--ADALEA 130

Query: 141 GAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGI 199
                A     A++   +  P   L+   T   EI     G VD +++  G GG  +GI
Sbjct: 131 AQAFAAE--TGALLCHAYDQPEV-LAGAGTLGLEIEEQAPG-VDTVLVAVGGGGLIAGI 185

Length = 310

>gnl|CDD|236417 PRK09224, PRK09224, threonine dehydratase; Reviewed

 Score = 50.5 bits (122), Expect = 9e-07
 Identities = 51/202 (25%), Positives = 80/202 (39%), Gaps = 58/202 (28%)

Query: 43  KCEFMNPTGSLKDRAAWRMI----EDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
           K E + P  S K R A+  +    E+    GV       +  S+GN   G+A+ AA  G 
Sbjct: 40  KREDLQPVFSFKLRGAYNKMAQLTEEQLARGV-------ITASAGNHAQGVALSAARLGI 92

Query: 99  KMVVVMPMKMSKEKVYTMKALGAKI--------------IRTQNDKS------YDHPEGM 138
           K V+VMP+     KV  ++A G ++              I    ++       +D P+ +
Sbjct: 93  KAVIVMPVTTPDIKVDAVRAFGGEVVLHGDSFDEAYAHAIELAEEEGLTFIHPFDDPD-V 151

Query: 139 IAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASG 198
           IAG      Q                     T A EIL+     +D + +  G GG  +G
Sbjct: 152 IAG------Q--------------------GTIAMEILQQHPHPLDAVFVPVGGGGLIAG 185

Query: 199 IGRKIKEKCPSCKLVGADPFGS 220
           +   IK+  P  K++G +P  S
Sbjct: 186 VAAYIKQLRPEIKVIGVEPEDS 207

Length = 504

>gnl|CDD|136018 PRK06721, PRK06721, threonine synthase; Reviewed

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 5/124 (4%)

Query: 7   YSNSARNSPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAE 66
           Y     N+P    + G  PL+P       L      K E  NPTGS KDR     +  A+
Sbjct: 12  YLPVNENTPDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAK 71

Query: 67  TAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPM-KMSKEKVYTMKALGAKIIR 125
             G       I+  S+GNT    A  AA  G K ++V+P  K++  K+    A GA+II 
Sbjct: 72  EEG----SEAIICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIIS 127

Query: 126 TQND 129
            + +
Sbjct: 128 IEGN 131

Length = 352

>gnl|CDD|181283 PRK08197, PRK08197, threonine synthase; Validated

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 14/133 (10%)

Query: 22  GKVPLLPQSKQGSIL-LPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEP 80
           G  PLLP  + G  L +     K E +NPTGS K R     +  A+  GV      +  P
Sbjct: 78  GMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGVKH----LAMP 133

Query: 81  SSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIA 140
           ++GN G   A  AA  G +  + MP    +         GA++            +G+I+
Sbjct: 134 TNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAELYLV---------DGLIS 184

Query: 141 GAHRIASQMKNAV 153
            A +I ++     
Sbjct: 185 DAGKIVAEAVAEY 197

Length = 394

>gnl|CDD|236318 PRK08639, PRK08639, threonine dehydratase; Validated

 Score = 47.9 bits (115), Expect = 6e-06
 Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 27/188 (14%)

Query: 43  KCEFMNPTGSLKDRAAWRMI----EDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
           K E + P  S K R A+  I    ++   AGV       V  S+GN   G+A      G 
Sbjct: 45  KREDLQPVRSYKLRGAYNAISQLSDEELAAGV-------VCASAGNHAQGVAYACRHLGI 97

Query: 99  KMVVVMPMKMSKEKVYTMKALGAK---IIRTQN--DKSYDHPEGMIAGAHRIASQMKNAV 153
             V+ MP+   ++K+  ++  G +   I+   +  D S        A A   A +   A 
Sbjct: 98  PGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDSA-------AAAQEYAEE-TGAT 149

Query: 154 VLDQFRNPNNPLSHYETTAEEILRDTG--GKVDMIVLGCGTGGTASGIGRKIKEKCPSCK 211
            +  F +P+  ++   T A EIL      G  D + +  G GG  SG+   +KE+ P  K
Sbjct: 150 FIPPFDDPDV-IAGQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTK 208

Query: 212 LVGADPFG 219
           ++G +P G
Sbjct: 209 IIGVEPAG 216

Length = 420

>gnl|CDD|132036 TIGR02991, ectoine_eutB, ectoine utilization protein EutB

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 21/177 (11%)

Query: 43  KCEFMNPTGSLKDRAAWRMI---EDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYK 99
           K E    TGS K R A   +    D + A        +V  S+GN G  LA  AA +G +
Sbjct: 39  KLEHRQTTGSFKLRGATNAVLSLSDTQRAA------GVVAASTGNHGRALAYAAAEEGVR 92

Query: 100 MVVVMPMKMSKEKVYTMKALGA--KIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQ 157
             + M   + + KV  ++ LGA  +I+    D + +  E ++A         +   +L  
Sbjct: 93  ATICMSELVPQNKVDEIRRLGAEVRIVGRSQDDAQEEVERLVAD--------RGLTMLPP 144

Query: 158 FRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVG 214
           F +P + ++   T   E++      +  +++    GG ASG+   +K   P  +++G
Sbjct: 145 FDHP-DIVAGQGTLGLEVVEQM-PDLATVLVPLSGGGLASGVAMAVKAARPDTRVIG 199

Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases. Length = 317

>gnl|CDD|236025 PRK07476, eutB, threonine dehydratase; Provisional

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 19/177 (10%)

Query: 43  KCEFMNPTGSLKDRAAWRMI----EDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
           K E + PTGS K R A   +          GV       V  S+GN G  LA  A   G 
Sbjct: 39  KLETLQPTGSFKLRGATNALLSLSAQERARGV-------VTASTGNHGRALAYAARALGI 91

Query: 99  KMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQF 158
           +  + M   +   KV  ++ALGA++       S D  +   A   R+  + +   ++  F
Sbjct: 92  RATICMSRLVPANKVDAIRALGAEVRIVGR--SQDDAQ---AEVERLVRE-EGLTMVPPF 145

Query: 159 RNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGA 215
            +P   ++   T   EIL      V  +++    GG ASG+   +K   P+ +++G 
Sbjct: 146 DDP-RIIAGQGTIGLEILEAL-PDVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGV 200

Length = 322

>gnl|CDD|236186 PRK08206, PRK08206, diaminopropionate ammonia-lyase; Provisional

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 83  GNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYD 133
           GN G G+A  A   G K V+ MP   S+E+V  ++ALGA+ I T  D +YD
Sbjct: 125 GNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIIT--DGNYD 173

Length = 399

>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 347 SGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT 380
           SG A+  A + AK L P +  V IL D    YL+
Sbjct: 258 SGAAVAAALKLAKRLGPGKTIVTILPDSGERYLS 291

CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine. Length = 291

>gnl|CDD|235699 PRK06110, PRK06110, hypothetical protein; Provisional

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 43  KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVV 102
           K E   PTG+ K R      +     G    G  ++  + GN G  +A  A   G    +
Sbjct: 41  KHENHTPTGAFKVRGGLVYFDRLARRGPRVRG--VISATRGNHGQSVAFAARRHGLAATI 98

Query: 103 VMPMKMSKEKVYTMKALGAKII 124
           V+P   S EK   M+ALGA++I
Sbjct: 99  VVPHGNSVEKNAAMRALGAELI 120

Length = 322

>gnl|CDD|130808 TIGR01747, diampropi_NH3ly, diaminopropionate ammonia-lyase family

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 44/163 (26%), Positives = 67/163 (41%), Gaps = 20/163 (12%)

Query: 76  TIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHP 135
           T    + GN G G+A  A   G K VV MP   ++E+V  +  LGA+   T  D +YD  
Sbjct: 96  TFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTIT--DMNYDDT 153

Query: 136 EGMIAGAHRIASQMKNAVVLDQF-----RNPNNPLSHYETTAEEI---LRDTGGKV-DMI 186
             +   A ++A Q    VV D       + P   +  Y T A+E    LR+ G      +
Sbjct: 154 VRL---AMQMAQQHGWVVVQDTAWEGYEKIPTWIMQGYATLADEAVEQLREMGSVTPTHV 210

Query: 187 VLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLN 229
           +L  G G  A G+     +          +   SI+ +P   +
Sbjct: 211 LLQAGVGSMAGGVLGYFVDVYSE------NNPHSIVVEPDKAD 247

This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase) [Energy metabolism, Other]. Length = 376

>gnl|CDD|236339 PRK08813, PRK08813, threonine dehydratase; Provisional

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 15/173 (8%)

Query: 43  KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVV 102
           K E +  TGS K R A   +      G  +P   ++  S+GN   G+A  A   G + + 
Sbjct: 53  KLENLQRTGSYKVRGALNALLAGLERGDERP---VICASAGNHAQGVAWSAYRLGVQAIT 109

Query: 103 VMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPN 162
           VMP    + K+  +   GA +   Q+  SYD        A  +A Q      L  F +P 
Sbjct: 110 VMPHGAPQTKIAGVAHWGATV--RQHGNSYDEAYAF---ARELADQ-NGYRFLSAFDDP- 162

Query: 163 NPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGA 215
           + ++   T   E+        D++++  G GG ASG+   +K +    ++VGA
Sbjct: 163 DVIAGQGTVGIEL---AAHAPDVVIVPIGGGGLASGVALALKSQ--GVRVVGA 210

Length = 349

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	404
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	100.0
PLN02565	322	cysteine synthase	100.0
PLN02356	423	phosphateglycerate kinase	100.0
PRK10717	330	cysteine synthase A; Provisional	100.0
KOG1252|consensus	362		100.0
PLN03013	429	cysteine synthase	100.0
PLN02556	368	cysteine synthase/L-3-cyanoalanine synthase	100.0
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	100.0
PRK11761	296	cysM cysteine synthase B; Provisional	100.0
TIGR01139	298	cysK cysteine synthase A. This model distinguishes	100.0
TIGR01138	290	cysM cysteine synthase B. Alternate name: O-acetyl	100.0
TIGR01136	299	cysKM cysteine synthases. This model discriminates	100.0
PLN00011	323	cysteine synthase	100.0
KOG1481|consensus	391		100.0
cd01561	291	CBS_like CBS_like: This subgroup includes Cystathi	100.0
COG1171	347	IlvA Threonine dehydratase [Amino acid transport a	100.0
PRK06608	338	threonine dehydratase; Provisional	100.0
PRK06352	351	threonine synthase; Validated	100.0
PRK08197	394	threonine synthase; Validated	100.0
cd06448	316	L-Ser-dehyd Serine dehydratase is a pyridoxal phos	100.0
PRK06721	352	threonine synthase; Reviewed	100.0
PLN02970	328	serine racemase	100.0
PRK07591	421	threonine synthase; Validated	100.0
PRK12483	521	threonine dehydratase; Reviewed	100.0
PRK07409	353	threonine synthase; Validated	100.0
PRK08526	403	threonine dehydratase; Provisional	100.0
cd06447	404	D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph	100.0
PRK07476	322	eutB threonine dehydratase; Provisional	100.0
PRK06382	406	threonine dehydratase; Provisional	100.0
PRK08198	404	threonine dehydratase; Provisional	100.0
PRK07334	403	threonine dehydratase; Provisional	100.0
PRK07048	321	serine/threonine dehydratase; Validated	100.0
TIGR02991	317	ectoine_eutB ectoine utilization protein EutB. Mem	100.0
PRK06110	322	hypothetical protein; Provisional	100.0
PRK08329	347	threonine synthase; Validated	100.0
cd01563	324	Thr-synth_1 Threonine synthase is a pyridoxal phos	100.0
PLN02569	484	threonine synthase	100.0
PLN02550	591	threonine dehydratase	100.0
PRK02991	441	D-serine dehydratase; Provisional	100.0
PRK06815	317	hypothetical protein; Provisional	100.0
PRK08638	333	threonine dehydratase; Validated	100.0
cd01562	304	Thr-dehyd Threonine dehydratase: The first step in	100.0
TIGR01124	499	ilvA_2Cterm threonine ammonia-lyase, biosynthetic,	100.0
PRK08639	420	threonine dehydratase; Validated	100.0
PRK08813	349	threonine dehydratase; Provisional	100.0
PRK06260	397	threonine synthase; Validated	100.0
TIGR02035	431	D_Ser_am_lyase D-serine ammonia-lyase. This family	100.0
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	100.0
PRK06381	319	threonine synthase; Validated	100.0
PRK08246	310	threonine dehydratase; Provisional	100.0
TIGR02079	409	THD1 threonine dehydratase. This model represents	100.0
PRK06450	338	threonine synthase; Validated	100.0
PRK09224	504	threonine dehydratase; Reviewed	100.0
PRK05638	442	threonine synthase; Validated	100.0
cd00640	244	Trp-synth-beta_II Tryptophan synthase beta superfa	100.0
TIGR00260	328	thrC threonine synthase. Involved in threonine bio	100.0
PRK08206	399	diaminopropionate ammonia-lyase; Provisional	100.0
KOG1250|consensus	457		100.0
cd06446	365	Trp-synth_B Tryptophan synthase-beta: Trptophan sy	100.0
TIGR03844	398	cysteate_syn cysteate synthase. Members of this fa	100.0
PRK04346	397	tryptophan synthase subunit beta; Validated	100.0
PRK13028	402	tryptophan synthase subunit beta; Provisional	100.0
TIGR00263	385	trpB tryptophan synthase, beta subunit. Tryptophan	100.0
PLN02618	410	tryptophan synthase, beta chain	100.0
KOG1251|consensus	323		100.0
TIGR01415	419	trpB_rel pyridoxal-phosphate dependent TrpB-like e	100.0
PF00291	306	PALP: Pyridoxal-phosphate dependent enzyme; InterP	100.0
PRK12391	427	tryptophan synthase subunit beta; Reviewed	100.0
PRK14045	329	1-aminocyclopropane-1-carboxylate deaminase; Provi	100.0
PRK12390	337	1-aminocyclopropane-1-carboxylate deaminase; Provi	100.0
cd06449	307	ACCD Aminocyclopropane-1-carboxylate deaminase (AC	100.0
TIGR01275	311	ACC_deam_rel pyridoxal phosphate-dependent enzymes	100.0
PRK03910	331	D-cysteine desulfhydrase; Validated	100.0
PRK13802	695	bifunctional indole-3-glycerol phosphate synthase/	100.0
TIGR01747	376	diampropi_NH3ly diaminopropionate ammonia-lyase fa	100.0
TIGR01274	337	ACC_deam 1-aminocyclopropane-1-carboxylate deamina	100.0
TIGR03528	396	2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem	100.0
PRK13803	610	bifunctional phosphoribosylanthranilate isomerase/	100.0
COG0498	411	ThrC Threonine synthase [Amino acid transport and	100.0
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	100.0
KOG1252|consensus	362		100.0
PRK09225	462	threonine synthase; Validated	99.97
cd01560	460	Thr-synth_2 Threonine synthase catalyzes the final	99.97
COG0133	396	TrpB Tryptophan synthase beta chain [Amino acid tr	99.97
COG2515	323	Acd 1-aminocyclopropane-1-carboxylate deaminase [A	99.96
PLN02356	423	phosphateglycerate kinase	99.96
KOG1395|consensus	477		99.94
COG1350	432	Predicted alternative tryptophan synthase beta-sub	99.93
PLN02556	368	cysteine synthase/L-3-cyanoalanine synthase	99.93
PLN02565	322	cysteine synthase	99.92
PLN03013	429	cysteine synthase	99.91
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.91
PRK10717	330	cysteine synthase A; Provisional	99.91
TIGR01138	290	cysM cysteine synthase B. Alternate name: O-acetyl	99.9
PRK11761	296	cysM cysteine synthase B; Provisional	99.89
PLN00011	323	cysteine synthase	99.87
TIGR01139	298	cysK cysteine synthase A. This model distinguishes	99.83
COG3048	443	DsdA D-serine dehydratase [Amino acid transport an	99.81
PRK06608	338	threonine dehydratase; Provisional	99.81
TIGR01136	299	cysKM cysteine synthases. This model discriminates	99.8
PRK06721	352	threonine synthase; Reviewed	99.79
KOG1481|consensus	391		99.77
cd01561	291	CBS_like CBS_like: This subgroup includes Cystathi	99.76
PRK06352	351	threonine synthase; Validated	99.75
PRK07334	403	threonine dehydratase; Provisional	99.73
PRK08638	333	threonine dehydratase; Validated	99.71
cd06446	365	Trp-synth_B Tryptophan synthase-beta: Trptophan sy	99.7
PRK07409	353	threonine synthase; Validated	99.7
PRK08198	404	threonine dehydratase; Provisional	99.69
PLN02618	410	tryptophan synthase, beta chain	99.68
TIGR00263	385	trpB tryptophan synthase, beta subunit. Tryptophan	99.67
PRK08197	394	threonine synthase; Validated	99.67
PRK06382	406	threonine dehydratase; Provisional	99.67
PLN02970	328	serine racemase	99.66
cd06448	316	L-Ser-dehyd Serine dehydratase is a pyridoxal phos	99.66
PRK07048	321	serine/threonine dehydratase; Validated	99.66
cd01563	324	Thr-synth_1 Threonine synthase is a pyridoxal phos	99.66
PRK13028	402	tryptophan synthase subunit beta; Provisional	99.65
cd00640	244	Trp-synth-beta_II Tryptophan synthase beta superfa	99.65
PRK06815	317	hypothetical protein; Provisional	99.65
cd01562	304	Thr-dehyd Threonine dehydratase: The first step in	99.64
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	99.63
PRK04346	397	tryptophan synthase subunit beta; Validated	99.63
PRK08639	420	threonine dehydratase; Validated	99.63
PRK13802	695	bifunctional indole-3-glycerol phosphate synthase/	99.62
PRK06110	322	hypothetical protein; Provisional	99.61
PRK13803	610	bifunctional phosphoribosylanthranilate isomerase/	99.57
TIGR02079	409	THD1 threonine dehydratase. This model represents	99.56
PLN02569	484	threonine synthase	99.54
cd06447	404	D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph	99.54
PRK08246	310	threonine dehydratase; Provisional	99.54
PRK05638	442	threonine synthase; Validated	99.54
PRK06381	319	threonine synthase; Validated	99.53
PRK07591	421	threonine synthase; Validated	99.53
PRK12391	427	tryptophan synthase subunit beta; Reviewed	99.52
TIGR01124	499	ilvA_2Cterm threonine ammonia-lyase, biosynthetic,	99.52
PRK08206	399	diaminopropionate ammonia-lyase; Provisional	99.5
PRK07476	322	eutB threonine dehydratase; Provisional	99.49
PRK06260	397	threonine synthase; Validated	99.49
PRK08329	347	threonine synthase; Validated	99.49
PRK08526	403	threonine dehydratase; Provisional	99.49
TIGR02991	317	ectoine_eutB ectoine utilization protein EutB. Mem	99.48
TIGR01415	419	trpB_rel pyridoxal-phosphate dependent TrpB-like e	99.46
PRK12483	521	threonine dehydratase; Reviewed	99.46
PRK09224	504	threonine dehydratase; Reviewed	99.46
PLN02550	591	threonine dehydratase	99.45
TIGR00260	328	thrC threonine synthase. Involved in threonine bio	99.45
cd06449	307	ACCD Aminocyclopropane-1-carboxylate deaminase (AC	99.44
TIGR01275	311	ACC_deam_rel pyridoxal phosphate-dependent enzymes	99.44
PRK06450	338	threonine synthase; Validated	99.42
PRK03910	331	D-cysteine desulfhydrase; Validated	99.39
PRK12390	337	1-aminocyclopropane-1-carboxylate deaminase; Provi	99.36
PRK08813	349	threonine dehydratase; Provisional	99.36
PRK14045	329	1-aminocyclopropane-1-carboxylate deaminase; Provi	99.36
PRK02991	441	D-serine dehydratase; Provisional	99.34
TIGR02035	431	D_Ser_am_lyase D-serine ammonia-lyase. This family	99.33
PF00291	306	PALP: Pyridoxal-phosphate dependent enzyme; InterP	99.32
TIGR01274	337	ACC_deam 1-aminocyclopropane-1-carboxylate deamina	99.32
KOG1250|consensus	457		99.06
COG1171	347	IlvA Threonine dehydratase [Amino acid transport a	98.96
TIGR03844	398	cysteate_syn cysteate synthase. Members of this fa	98.78
TIGR03528	396	2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem	98.7
TIGR01747	376	diampropi_NH3ly diaminopropionate ammonia-lyase fa	98.66
KOG1251|consensus	323		98.31
COG0498	411	ThrC Threonine synthase [Amino acid transport and	97.73
COG0133	396	TrpB Tryptophan synthase beta chain [Amino acid tr	97.72
KOG1395|consensus	477		97.35
COG1350	432	Predicted alternative tryptophan synthase beta-sub	91.44
KOG2616|consensus	266		91.32
COG2515	323	Acd 1-aminocyclopropane-1-carboxylate deaminase [A	91.02
cd01560	460	Thr-synth_2 Threonine synthase catalyzes the final	90.46
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	89.45
PRK09225	462	threonine synthase; Validated	89.13
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	87.58
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	86.14
KOG2862|consensus	385		84.58
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	82.09
PF00764	388	Arginosuc_synth: Arginosuccinate synthase; InterPr	82.05
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	80.5

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-61  Score=444.06  Aligned_cols=294  Identities=45%  Similarity=0.671  Sum_probs=273.6

Q ss_pred             cCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHc
Q psy14801         17 TPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIK   96 (404)
Q Consensus        17 ~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~   96 (404)
                      +...+|+|||++++++....+++||+|+|++||+||.|||.+.+|+.+|+++|.++||++||++||||+|++||++|+.+
T Consensus         5 ~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI~LA~vaa~~   84 (300)
T COG0031           5 ILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIALAMVAAAK   84 (300)
T ss_pred             hHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCCEEEEcCCChHHHHHHHHHHHc
Confidence            44568999999999999888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCC-cEeecCCCCCCChhhHHhhHHHHH
Q psy14801         97 GYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKN-AVVLDQFRNPNNPLSHYETTAEEI  175 (404)
Q Consensus        97 G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~-~~~~~e~~np~~si~g~~~~a~ei  175 (404)
                      |+++++|||++++.+|+++|++|||+|++++....  .-..+.+++++++++.++ .++.+||.||.|+..||.++|.||
T Consensus        85 Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g--~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI  162 (300)
T COG0031          85 GYRLIIVMPETMSQERRKLLRALGAEVILTPGAPG--NMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEI  162 (300)
T ss_pred             CCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCC--chHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHH
Confidence            99999999999999999999999999999997332  234567778889988877 666789999999999999999999


Q ss_pred             HHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccCc
Q psy14801        176 LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDR  255 (404)
Q Consensus       176 ~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  255 (404)
                      ++|+.+++|++|..+|+|||++|++.+++...|++|+++|+|.+++.+....         ..+.++|++..++|..++.
T Consensus       163 ~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~---------g~~~i~GIG~~~ip~~~~~  233 (300)
T COG0031         163 WQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGE---------GPHKIEGIGAGFVPENLDL  233 (300)
T ss_pred             HHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCC---------CCcccCCCCCCcCCccccc
Confidence            9999988999999999999999999999999999999999999998765411         5678999999999988888


Q ss_pred             cccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCccc
Q psy14801        256 NVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT  321 (404)
Q Consensus       256 ~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~  321 (404)
                      ..+|+++.|+|++++++++++++.+|+++|+|||++++++.+++++..++.+||+|.||.+.+|++
T Consensus       234 ~~iD~v~~V~d~~A~~~~r~La~~eGilvG~SsGA~~~aa~~~a~~~~~g~~IVti~pD~G~RYls  299 (300)
T COG0031         234 DLIDEVIRVSDEEAIATARRLAREEGLLVGISSGAALAAALKLAKELPAGKTIVTILPDSGERYLS  299 (300)
T ss_pred             ccCceEEEECHHHHHHHHHHHHHHhCeeecccHHHHHHHHHHHHHhcCCCCeEEEEECCCcccccC
Confidence            899999999999999999999999999999999999999999999998899999999999999986

>PLN02565 cysteine synthase

Probab=100.00  E-value=4.3e-57  Score=430.23  Aligned_cols=303  Identities=39%  Similarity=0.590  Sum_probs=264.5

Q ss_pred             cCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCC-CEEEecCCChHHHHHHHHHHH
Q psy14801         17 TPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPG-YTIVEPSSGNTGIGLAMVAAI   95 (404)
Q Consensus        17 ~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~ssGN~g~a~A~~a~~   95 (404)
                      +.+.+|+|||++++.++.+.+++||+|+|++|||||||||++.+++..+.++|.+.|| ++||++|+||||+|+|++|+.
T Consensus         9 ~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~   88 (322)
T PLN02565          9 VTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAA   88 (322)
T ss_pred             HHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHHH
Confidence            5678999999999988776678999999999999999999999999999999988888 569999999999999999999


Q ss_pred             cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHH
Q psy14801         96 KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI  175 (404)
Q Consensus        96 ~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei  175 (404)
                      +|++|+||||++++..|+++|+.|||+|+.++...++   .+.++.+++++++.++.++++||.||.|+..||.++|+||
T Consensus        89 ~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~---~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~Ei  165 (322)
T PLN02565         89 KGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGM---KGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEI  165 (322)
T ss_pred             cCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCc---HHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999863222   2346778888887656788899999999888999999999


Q ss_pred             HHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccCc
Q psy14801        176 LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDR  255 (404)
Q Consensus       176 ~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  255 (404)
                      ++|+..+||++|+++|+|++++||+.+++...|.+|+|+|+|.+++.+....        ...+.+++++....+..+..
T Consensus       166 ~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~--------~~~~~~~glg~~~~~~~~~~  237 (322)
T PLN02565        166 WKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGK--------PGPHKIQGIGAGFIPGVLDV  237 (322)
T ss_pred             HHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCC--------CCCccCCCCCCCCCCCcCCH
Confidence            9999767999999999999999999999999999999999999986653211        11234456665555555555


Q ss_pred             cccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCCCCccccccchhHHh
Q psy14801        256 NVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGVRNYLTKFISDEWMI  330 (404)
Q Consensus       256 ~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~~~~~~~~~~~~~~~  330 (404)
                      ..+|+++.|+|.|++++++++++++|+++||+||++++++.+++++. .++.+||++.||++.+|+++.+.+.+..
T Consensus       238 ~~vd~~v~V~d~ea~~a~~~l~~~~gi~vg~ssga~laaa~~~a~~~~~~~~~vV~v~~d~G~ky~~~~~~~~~~~  313 (322)
T PLN02565        238 DLLDEVVQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPENAGKLIVVIFPSFGERYLSSVLFESVKK  313 (322)
T ss_pred             hHCCEEEEECHHHHHHHHHHHHHHhCcEEeccHHHHHHHHHHHHHhcCCCCCeEEEEECCCccccCCchhhHHHHH
Confidence            67789999999999999999999999999999999999999999875 4577999999999999999988776653

>PLN02356 phosphateglycerate kinase

Probab=100.00  E-value=5.6e-57  Score=436.48  Aligned_cols=318  Identities=34%  Similarity=0.437  Sum_probs=267.7

Q ss_pred             CCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcC
Q psy14801         18 PTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKG   97 (404)
Q Consensus        18 ~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G   97 (404)
                      ...+|+|||+++++|+...|++||+|+|++|||||||||++.+++..+.++|.++|+.+|+++||||||+|+|++|+.+|
T Consensus        48 ~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~VveaSSGN~g~alA~~aa~~G  127 (423)
T PLN02356         48 IDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGVVTEGSAGSTAISLATVAPAYG  127 (423)
T ss_pred             HhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCCEEEEeCCHHHHHHHHHHHHHcC
Confidence            34679999999999998888999999999999999999999999999999998888889999999999999999999999


Q ss_pred             CeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC-----CCCCC-hhhHHHHHHHHHHh-----------------------
Q psy14801         98 YKMVVVMPMKMSKEKVYTMKALGAKIIRTQND-----KSYDH-PEGMIAGAHRIASQ-----------------------  148 (404)
Q Consensus        98 ~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~-----~~~~~-~~~~~~~a~~l~~~-----------------------  148 (404)
                      ++|+||||+++++.|+++|+.|||+|+.+++.     .++.. +......+++++++                       
T Consensus       128 ~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~~~~~  207 (423)
T PLN02356        128 CKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCISEEE  207 (423)
T ss_pred             CcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccc
Confidence            99999999999999999999999999999742     11111 11111234444433                       


Q ss_pred             ---------CCCcEeecCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC
Q psy14801        149 ---------MKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG  219 (404)
Q Consensus       149 ---------~~~~~~~~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~  219 (404)
                               .++.+|++||.||.+...|+..+|+||++|+..++|++|+++|+||+++|++.+++...|.+||++|+|.+
T Consensus       208 ~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVigVep~~  287 (423)
T PLN02356        208 KENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLIDPPG  287 (423)
T ss_pred             ccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence                     14568889999999877777778999999998789999999999999999999999999999999999998


Q ss_pred             CcccccCC----------CCCCCCCCCccccccCCCCcccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchh
Q psy14801        220 SILAQPQS----------LNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSG  289 (404)
Q Consensus       220 ~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg  289 (404)
                      +..+....          .+.. ......+.+++++....+..++...+|.++.|+|.|+.++++++++++|+++||+||
T Consensus       288 s~~~~~~~~~~~~~~s~~~G~~-~~~~~~tia~Gig~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~vg~Ssa  366 (423)
T PLN02356        288 SGLFNKVTRGVMYTREEAEGRR-LKNPFDTITEGIGINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSSSA  366 (423)
T ss_pred             CccccccccchhhhhhhhcCCc-cCCCCCeecCcCcCCCCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCeeEeECHH
Confidence            86442210          0110 011124667788777666666677889999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhcCCCCeEEEEecCCCCCccccccchhHHhhcCccC
Q psy14801        290 TAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLD  336 (404)
Q Consensus       290 ~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~  336 (404)
                      ++++++.++.++..++.+||+|.||.+.+|++++++++|+.++.+.+
T Consensus       367 a~laaa~~la~~~~~g~~VV~Il~d~G~kyl~~~~~~~w~~~~~~~~  413 (423)
T PLN02356        367 MNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKFHDPQYLSQHGLTP  413 (423)
T ss_pred             HHHHHHHHHHHHhCCCCeEEEEECCCCcchhhhhcCHHHHHhcCCCC
Confidence            99999999887776788999999999999999999999998776643

>PRK10717 cysteine synthase A; Provisional

Probab=100.00  E-value=1.4e-56  Score=430.59  Aligned_cols=315  Identities=40%  Similarity=0.585  Sum_probs=267.6

Q ss_pred             cCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHc
Q psy14801         17 TPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIK   96 (404)
Q Consensus        17 ~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~   96 (404)
                      +.+.+|+|||++++++++..|++||+|+|++|||||||||++.+++..++++|.++++++||++|+||||+|+|++|+.+
T Consensus         7 ~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~   86 (330)
T PRK10717          7 VSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGGTIVEGTAGNTGIGLALVAAAR   86 (330)
T ss_pred             HHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHc
Confidence            45678999999999999988999999999999999999999999999999999988989999999999999999999999


Q ss_pred             CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChh----hHHHHHHHHHHhC-CCcEeecCCCCCCChhhHHhhH
Q psy14801         97 GYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPE----GMIAGAHRIASQM-KNAVVLDQFRNPNNPLSHYETT  171 (404)
Q Consensus        97 G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~----~~~~~a~~l~~~~-~~~~~~~e~~np~~si~g~~~~  171 (404)
                      |++|+||||..+++.|+++++.+||+|+.++.. .+++..    ...+.++++.++. .+.+|+++|.||.+.+.||.++
T Consensus        87 G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~-~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~  165 (330)
T PRK10717         87 GYKTVIVMPETQSQEKKDLLRALGAELVLVPAA-PYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHYETT  165 (330)
T ss_pred             CCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCc-ccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHHHHhH
Confidence            999999999999999999999999999999863 244322    2223344444433 3578889999998878899999


Q ss_pred             HHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCccccc
Q psy14801        172 AEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAAT  251 (404)
Q Consensus       172 a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  251 (404)
                      |+||++|+..++|++|+++|+||+++|++.+++...|.+||++|+|.+++.+.....+..  .....+.+++++....+.
T Consensus       166 a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~~~~~~g~~--~~~~~~~~~gl~~~~~~~  243 (330)
T PRK10717        166 GPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGEL--KAEGSSITEGIGQGRITA  243 (330)
T ss_pred             HHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccccCCc--CCCCCcccCcCCCCcCCc
Confidence            999999998679999999999999999999999999999999999999854432111111  012234566666555555


Q ss_pred             ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCccccccchhHHhh
Q psy14801        252 TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIE  331 (404)
Q Consensus       252 ~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~  331 (404)
                      .+....++.++.|+|.|+.++++.+++++|+++||+||++++++.+++++..++.+||+|.||++.+|++..++|+|+..
T Consensus       244 ~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~vepssga~laa~~~l~~~~~~~~~Vv~v~~g~g~ky~~~~~~d~~~~~  323 (330)
T PRK10717        244 NLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSGINVAAALRLARELGPGHTIVTILCDSGERYQSKLFNPDFLRE  323 (330)
T ss_pred             ccChhhCCEEEEECHHHHHHHHHHHHHhcCCeEeecHHHHHHHHHHHHHhcCCCCEEEEEECCCchhhcccccCHHHHHh
Confidence            55555678999999999999999999999999999999999999998887777889999999999999999999999986


Q ss_pred             cCc
Q psy14801        332 KGF  334 (404)
Q Consensus       332 ~~~  334 (404)
                      +.+
T Consensus       324 ~~~  326 (330)
T PRK10717        324 KGL  326 (330)
T ss_pred             cCC
Confidence            654

>KOG1252|consensus

Probab=100.00  E-value=1.8e-57  Score=412.93  Aligned_cols=308  Identities=46%  Similarity=0.733  Sum_probs=284.8

Q ss_pred             CCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCC-CEEEecCCChHHHHHHHHHHHcC
Q psy14801         19 TVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPG-YTIVEPSSGNTGIGLAMVAAIKG   97 (404)
Q Consensus        19 ~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~ssGN~g~a~A~~a~~~G   97 (404)
                      +.+|+|||+.++++..+..++||+|+|.+||+||.|||.++.|+.+|+.+|.+.|| .+++++||||+|.++|++|+..|
T Consensus        48 ~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~~~a~~G  127 (362)
T KOG1252|consen   48 DLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAYMAALRG  127 (362)
T ss_pred             HHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHHHHHHHcC
Confidence            67999999999999888888999999999999999999999999999999999999 67999999999999999999999


Q ss_pred             CeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHH
Q psy14801         98 YKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILR  177 (404)
Q Consensus        98 ~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~  177 (404)
                      ++|+++||++++.+|+.+|++||++|+++|....++.++..++.+.++..+.++.+.++||.||+|+..||++++.||++
T Consensus       128 yk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~ttg~EI~~  207 (362)
T KOG1252|consen  128 YKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYETTGPEIWR  207 (362)
T ss_pred             ceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccccccHHHHH
Confidence            99999999999999999999999999999987777776667889999999999999999999999999999999999999


Q ss_pred             HhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccCccc
Q psy14801        178 DTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNV  257 (404)
Q Consensus       178 q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  257 (404)
                      |+.+++|.+|.++|+|||++|++.++++..|+++|++|+|..+....+...+.      ..+.++|+|..+.|..++...
T Consensus       208 q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~------~~~~I~GIGyg~~p~~ld~~~  281 (362)
T KOG1252|consen  208 QLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGP------TFHKIQGIGYGFIPTTLDTKL  281 (362)
T ss_pred             HhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCC------CccceeccccCcCccccchHH
Confidence            99989999999999999999999999999999999999999998765532221      347789999999999999999


Q ss_pred             cCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEe-cCCCCCccccccchhHHhhc
Q psy14801        258 IDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVIL-ADGVRNYLTKFISDEWMIEK  332 (404)
Q Consensus       258 ~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~-~~~~~~~~~~~~~~~~~~~~  332 (404)
                      ++.++.+.+.|+..++++|+.++|+.+|.|||++++++.+.+++.....+++++. |+++++|++++++|+|+...
T Consensus       282 vd~~~~~~~d~A~~~Ar~La~eeGll~G~SSGan~~aAl~~a~~~en~~kliV~~~pd~ge~Y~st~L~d~w~~e~  357 (362)
T KOG1252|consen  282 VDEVLKVSSDEAIEMARRLALEEGLLVGISSGANVAAALKLAKRPENAGKLIVVTFPDFGERYLSTFLFDEWREEA  357 (362)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhhCeeecccchHHHHHHHHHHhccccCCcEEEEECCCcchhhhhhhhHHHHHHHH
Confidence            9999999999999999999999999999999999999999998865455666666 99999999999999998654

>PLN03013 cysteine synthase

Probab=100.00  E-value=3.2e-56  Score=431.25  Aligned_cols=298  Identities=38%  Similarity=0.598  Sum_probs=260.7

Q ss_pred             CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCC-CEEEecCCChHHHHHHHHH
Q psy14801         15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPG-YTIVEPSSGNTGIGLAMVA   93 (404)
Q Consensus        15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~ssGN~g~a~A~~a   93 (404)
                      ..+.+.+|+|||++++.+.+..+++||+|+|++|||||||||++.+++..++++|.+.|| .+||++|+||||+|+|++|
T Consensus       115 ~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~~a  194 (429)
T PLN03013        115 DNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIA  194 (429)
T ss_pred             HHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHHHH
Confidence            345678999999999999888888999999999999999999999999999999999998 6799999999999999999


Q ss_pred             HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHH
Q psy14801         94 AIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAE  173 (404)
Q Consensus        94 ~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~  173 (404)
                      +.+|++++||||+.++..|+++|+.|||+|+.++....+   .+.++.+++++++.++.+|++||.||.|...||.++|+
T Consensus       195 ~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~---~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~  271 (429)
T PLN03013        195 ASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGM---TGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGP  271 (429)
T ss_pred             HHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCCh---HHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999863222   34567788888876677888999999988789999999


Q ss_pred             HHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCccccccc
Q psy14801        174 EILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTL  253 (404)
Q Consensus       174 ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  253 (404)
                      ||++|+..+||++|+++|+||+++|++.+++...|++|||+|||.++..+....        ...+.+++++..+++..+
T Consensus       272 EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l~~g~--------~~~~~i~Glg~~~ip~~~  343 (429)
T PLN03013        272 EIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGK--------PGPHKIQGIGAGFIPKNL  343 (429)
T ss_pred             HHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCC--------CCCcccCcccCCcCCHhH
Confidence            999999878999999999999999999999999999999999999986652211        122445677777767777


Q ss_pred             CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcC-CCCeE-EEEecCCCCCccccc
Q psy14801        254 DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLR-PDQRC-VVILADGVRNYLTKF  323 (404)
Q Consensus       254 ~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~-~~~~v-v~v~~~~~~~~~~~~  323 (404)
                      +...+|+++.|+|.|++++++++++++|+++|+++|++++++.++.++.. ++..| +++.++++.+|.++.
T Consensus       344 ~~~~vD~vv~VsD~ea~~a~r~La~~eGi~vG~SSGAalaAalkla~~~~~~g~~IVv~i~~d~g~~Y~~~~  415 (429)
T PLN03013        344 DQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIAVSLFASGRDIYTPRC  415 (429)
T ss_pred             HHHhccEEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhccCCCCEEEEEEcCCCchhchhhh
Confidence            76788999999999999999999999999999999999999999887654 35544 667778889998884

>PLN02556 cysteine synthase/L-3-cyanoalanine synthase

Probab=100.00  E-value=1e-55  Score=426.51  Aligned_cols=305  Identities=37%  Similarity=0.529  Sum_probs=265.1

Q ss_pred             CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCC-CEEEecCCChHHHHHHHHH
Q psy14801         15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPG-YTIVEPSSGNTGIGLAMVA   93 (404)
Q Consensus        15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~ssGN~g~a~A~~a   93 (404)
                      +.+.+.+|+|||++++++....|++||+|+|++|||||||||++.+++.+++++|.+.|| ++||++|+||||+|+|++|
T Consensus        51 ~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~~a  130 (368)
T PLN02556         51 TDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMA  130 (368)
T ss_pred             hhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHHHH
Confidence            445678999999999999888889999999999999999999999999999999999988 5799999999999999999


Q ss_pred             HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHH
Q psy14801         94 AIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAE  173 (404)
Q Consensus        94 ~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~  173 (404)
                      +.+|++|+||||..++..|+++|+.|||+|+.++...   .....++.++++.++.++.+|++||.||.|...||.++|+
T Consensus       131 ~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~---~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~  207 (368)
T PLN02556        131 AMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTK---GMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGP  207 (368)
T ss_pred             HHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCC---CccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998522   2224567788888877677888999999987779999999


Q ss_pred             HHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCccccccc
Q psy14801        174 EILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTL  253 (404)
Q Consensus       174 ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  253 (404)
                      ||++|....+|++|+++|||||++|++.+++...|++||++|+|.++.......        ...+.+.+++....+..+
T Consensus       208 EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~--------~~~~~i~g~g~~~~p~~~  279 (368)
T PLN02556        208 EIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGK--------PGPHHITGNGVGFKPDIL  279 (368)
T ss_pred             HHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccccCCC--------CCCeeeeeccCCCCcccc
Confidence            999998667999999999999999999999999999999999999885432111        111234455545445566


Q ss_pred             CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCCCCccccccchhHHh
Q psy14801        254 DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGVRNYLTKFISDEWMI  330 (404)
Q Consensus       254 ~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~~~~~~~~~~~~~~~  330 (404)
                      +...+++++.|+|.|++++++++++++|+++|++||++++++.+++++. .++.+||+|.||.+.+|+++.+.++|..
T Consensus       280 ~~~~~d~~v~Vsd~ea~~a~r~l~~~eGi~vg~ssgA~~~aal~~a~~~~~~~~~IV~v~~d~g~kY~~~~~~~~~~~  357 (368)
T PLN02556        280 DMDVMEKVLEVSSEDAVNMARELALKEGLMVGISSGANTVAALRLAKMPENKGKLIVTVHPSFGERYLSSVLFQELRK  357 (368)
T ss_pred             chhhCCeEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhccCCcCEEEEEECCCCcccCChhhhHHHHH
Confidence            6677899999999999999999999999999999999999988887764 3577899999999999999999888864

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=100.00  E-value=6.4e-55  Score=437.84  Aligned_cols=315  Identities=57%  Similarity=0.908  Sum_probs=273.7

Q ss_pred             CCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcC
Q psy14801         18 PTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKG   97 (404)
Q Consensus        18 ~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G   97 (404)
                      ...+|+|||+++++++...|++||+|+|++|||||||||++.+++.++.++|.+.+|++||++|+||||+|+|++|+.+|
T Consensus         6 ~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~~ssGN~g~alA~~a~~~G   85 (454)
T TIGR01137         6 IDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGDTIIEPTSGNTGIGLALVAAIKG   85 (454)
T ss_pred             HHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcC
Confidence            34579999999999999888899999999999999999999999999999999899999999999999999999999999


Q ss_pred             CeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHH
Q psy14801         98 YKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILR  177 (404)
Q Consensus        98 ~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~  177 (404)
                      ++|+||||+.+++.|+++++.+||+|+.++....+++....++.++++.++.++.+|+++|.||.++..||.++|+||++
T Consensus        86 ~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~~  165 (454)
T TIGR01137        86 YKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPEILE  165 (454)
T ss_pred             CeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhHHHHHH
Confidence            99999999999999999999999999999864335555455667888887755667889999999888899999999999


Q ss_pred             HhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccCccc
Q psy14801        178 DTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNV  257 (404)
Q Consensus       178 q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  257 (404)
                      |+..+||++|+++|+||+++|++.+++...|.+||++|+|.++..........   .....+.+.+++...++..++...
T Consensus       166 q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~  242 (454)
T TIGR01137       166 QCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSILAQPENLNK---TGRTPYKVEGIGYDFIPTVLDRKV  242 (454)
T ss_pred             HhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCcccC---CCCCCccCCCCCCCCCCCcCCchh
Confidence            99877999999999999999999999999999999999999986443221110   111124456666555555566667


Q ss_pred             cCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHH-hcCCCCeEEEEecCCCCCccccccchhHHhhcCcc
Q psy14801        258 IDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAK-SLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFL  335 (404)
Q Consensus       258 ~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk-~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~  335 (404)
                      .+.++.|++.|++++++.+++++|+++||+||++++|+.++++ ++.++.+||++.||++.+|++++++++|+.++.+.
T Consensus       243 ~d~~~~V~~~e~~~a~~~l~~~~gi~~~~ssg~~~aa~~~~~~~~~~~~~~vv~~~~d~g~~y~~~~~~~~w~~~~~~~  321 (454)
T TIGR01137       243 VDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAALKAAEDELTEDQVIVVLLPDSIRNYMTKFLNDEWMKDNGFL  321 (454)
T ss_pred             CCeEEEECHHHHHHHHHHHHHHhCccCcHHHHHHHHHHHHHHHhhcCCCCEEEEEECCCCccccCcccChHHHHhcCCc
Confidence            8899999999999999999999999999999999999999888 56778899999999999999999999998876544

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>PRK11761 cysM cysteine synthase B; Provisional

Probab=100.00  E-value=5.4e-55  Score=412.08  Aligned_cols=290  Identities=37%  Similarity=0.539  Sum_probs=252.0

Q ss_pred             CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801         15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA   94 (404)
Q Consensus        15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~   94 (404)
                      ..+...+|+|||+++++|....|++||+|+|++|||||||||++.+++.++.++|.+.|+++||++|+||||+|+|++|+
T Consensus         4 ~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~   83 (296)
T PRK11761          4 PTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGDTLIEATSGNTGIALAMIAA   83 (296)
T ss_pred             ccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHH
Confidence            45566789999999999988888899999999999999999999999999999999889999999999999999999999


Q ss_pred             HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHH
Q psy14801         95 IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEE  174 (404)
Q Consensus        95 ~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~e  174 (404)
                      .+|++|+||||+.+++.|+++|+.+||+|+.++..+++   +++.+.++++.++. +.+|++||.||.++..||.++|+|
T Consensus        84 ~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~---~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~E  159 (296)
T PRK11761         84 IKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGM---EGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPE  159 (296)
T ss_pred             HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCCh---HHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHH
Confidence            99999999999999999999999999999999963333   34456678887765 568889999999888899999999


Q ss_pred             HHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccC
Q psy14801        175 ILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLD  254 (404)
Q Consensus       175 i~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  254 (404)
                      |++|+..++|.+|+++|+|++++|++.+++...|.+||++|||.++.....  +.             +......+..++
T Consensus       160 i~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~g--~~-------------~~~~~~~~~~~~  224 (296)
T PRK11761        160 IWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPG--IR-------------RWPEEYLPKIFD  224 (296)
T ss_pred             HHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCcC--CC-------------CCCCCcCCcccC
Confidence            999997679999999999999999999999999999999999998754311  11             111112233344


Q ss_pred             ccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcccccc
Q psy14801        255 RNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFI  324 (404)
Q Consensus       255 ~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~~~  324 (404)
                      ...+|.++.|+|.|+.++++++++.+|+++||++|++++++.++.++. ++.+||+|.||++.+|+++.+
T Consensus       225 ~~~vd~~v~V~d~e~~~a~~~l~~~~gi~ve~ssga~laaa~~~~~~~-~~~~vV~v~~d~g~ky~~~~~  293 (296)
T PRK11761        225 ASRVDRVLDVSQQEAENTMRRLAREEGIFCGVSSGGAVAAALRIAREN-PNAVIVAIICDRGDRYLSTGV  293 (296)
T ss_pred             hhhCCEEEEECHHHHHHHHHHHHHHhCceEchhHHHHHHHHHHHHHHC-CCCeEEEEECCCCcccCChhc
Confidence            556789999999999999999999999999999999999999877764 677999999999999998743

>TIGR01139 cysK cysteine synthase A

Probab=100.00  E-value=2.2e-54  Score=410.11  Aligned_cols=293  Identities=44%  Similarity=0.609  Sum_probs=255.4

Q ss_pred             CCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCC
Q psy14801         19 TVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY   98 (404)
Q Consensus        19 ~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~   98 (404)
                      ..+|+|||+++++ ....|.+||+|+|++|||||||||++.+++..+.++|.+.+|++||++|+||||+|+|++|+++|+
T Consensus         3 ~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~Gl   81 (298)
T TIGR01139         3 ELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKTIVEPTSGNTGIALAMVAAARGY   81 (298)
T ss_pred             cccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChhHHHHHHHHHHcCC
Confidence            4689999999998 556788999999999999999999999999999999988888999999999999999999999999


Q ss_pred             eEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCC-cEeecCCCCCCChhhHHhhHHHHHHH
Q psy14801         99 KMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKN-AVVLDQFRNPNNPLSHYETTAEEILR  177 (404)
Q Consensus        99 ~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~-~~~~~e~~np~~si~g~~~~a~ei~~  177 (404)
                      +|+||||+++++.|+++|+.+||+|+.++++  ++ ..+.++.++++.++.++ ++++++|.||.|.+.||.++++||++
T Consensus        82 ~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~--~~-~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~  158 (298)
T TIGR01139        82 KLILTMPETMSIERRKLLKAYGAELVLTPGA--EG-MKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWR  158 (298)
T ss_pred             eEEEEeCCccCHHHHHHHHHcCCEEEEECCC--CC-HHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999873  33 23456678888887654 44779999999899999999999999


Q ss_pred             HhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccCccc
Q psy14801        178 DTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNV  257 (404)
Q Consensus       178 q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  257 (404)
                      |+...||++|+|+|+|++++|++.+++...|++|+|+|+|.+++.......        ....+++++....+..++...
T Consensus       159 q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~--------~~~~~~gl~~~~~~~~~~~~~  230 (298)
T TIGR01139       159 DTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKP--------GPHKIQGIGAGFIPKNLNRSV  230 (298)
T ss_pred             HhCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCCCC--------CCCCCCCCCCCCCCCccChhh
Confidence            997679999999999999999999999999999999999999865433211        122334555444455555556


Q ss_pred             cCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCccccc
Q psy14801        258 IDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKF  323 (404)
Q Consensus       258 ~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~~  323 (404)
                      +|.++.|+|.|++++++++++++|+++||+||++++++.++.++..++.+||++.||++.+|+++.
T Consensus       231 ~d~~~~V~d~e~~~a~~~l~~~~gi~~~pssga~laa~~~~~~~~~~~~~vv~v~~d~G~ky~~~~  296 (298)
T TIGR01139       231 IDEVITVSDEEAIETARRLAAEEGILVGISSGAAVAAALKLAKRPEPDKLIVVILPSTGERYLSTP  296 (298)
T ss_pred             CCEEEEECHHHHHHHHHHHHHhcCceEcccHHHHHHHHHHHHHhcCCCCEEEEEECCCCccccCcc
Confidence            789999999999999999999999999999999999999998877678899999999999998864

This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.

>TIGR01138 cysM cysteine synthase B

Probab=100.00  E-value=1.8e-54  Score=407.57  Aligned_cols=286  Identities=36%  Similarity=0.537  Sum_probs=249.7

Q ss_pred             CCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcC
Q psy14801         18 PTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKG   97 (404)
Q Consensus        18 ~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G   97 (404)
                      ...+|+|||+++++++...|++||+|+|++|||||||||++.+++..+.++|.+.|+++||++|+||||+|+|++|+.+|
T Consensus         3 ~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G   82 (290)
T TIGR01138         3 EQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKG   82 (290)
T ss_pred             HHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHcC
Confidence            34689999999999998888999999999999999999999999999999999889999999999999999999999999


Q ss_pred             CeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHH
Q psy14801         98 YKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILR  177 (404)
Q Consensus        98 ~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~  177 (404)
                      ++|+||||+.+++.|+++|+.+||+|+.++.+.++   +.+.+.++++.++.+. +|++||.||.++..||.++|+||++
T Consensus        83 ~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~---~~~~~~a~~l~~~~~~-~~~~~~~~~~~~~~~~~t~~~Ei~~  158 (290)
T TIGR01138        83 YRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGM---EGARDLALELANRGEG-KLLDQFNNPDNPYAHYTSTGPEIWQ  158 (290)
T ss_pred             CeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCCh---HHHHHHHHHHHHhCCC-CCCCccCCcccHHHHhHhHHHHHHH
Confidence            99999999999999999999999999999863223   3456778888887644 5789999999888889999999999


Q ss_pred             HhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccCccc
Q psy14801        178 DTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNV  257 (404)
Q Consensus       178 q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  257 (404)
                      |+..++|.+|+++|+|++++|++.+++...|++|||+|+|.++.....  +             .+++..+.+..++...
T Consensus       159 q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g--~-------------~~~~~~~~~~~~~~~~  223 (290)
T TIGR01138       159 QTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPG--I-------------RRWPTEYLPGIFDASL  223 (290)
T ss_pred             HcCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccC--C-------------CCCCCCcCCcccChhh
Confidence            998779999999999999999999999999999999999998754211  1             0111122222334456


Q ss_pred             cCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCccccc
Q psy14801        258 IDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKF  323 (404)
Q Consensus       258 ~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~~  323 (404)
                      +|+++.|+|.|+..+++++++++|+++|+++|++++++.++++++ ++.+||+|.||++.+|+++.
T Consensus       224 ~d~~v~V~d~e~~~a~~~l~~~~gi~~g~ssga~laa~~~~~~~~-~~~~vv~v~~d~g~ky~~~~  288 (290)
T TIGR01138       224 VDRVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAAALRLAREL-PDAVVVAIICDRGDRYLSTG  288 (290)
T ss_pred             CcEEEEECHHHHHHHHHHHHHHhCceEcHhHHHHHHHHHHHHHHC-CCCeEEEEECCCCccccCcc
Confidence            789999999999999999999999999999999999999987775 67899999999999999874

Alternate name: O-acetylserine (thiol)-lyase

>TIGR01136 cysKM cysteine synthases

Probab=100.00  E-value=3.7e-54  Score=408.48  Aligned_cols=293  Identities=44%  Similarity=0.645  Sum_probs=255.9

Q ss_pred             CCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCe
Q psy14801         20 VPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYK   99 (404)
Q Consensus        20 ~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~   99 (404)
                      .+|+|||++++.|++..|++||+|+|++|||||||+|++.+++..+.++|.+.++++|+++|+||||+|+|++|+.+|++
T Consensus         4 ~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~   83 (299)
T TIGR01136         4 LIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGDTIIEATSGNTGIALAMVAAAKGYK   83 (299)
T ss_pred             ccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCc
Confidence            57899999999999988899999999999999999999999999999999888889999999999999999999999999


Q ss_pred             EEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHHHh
Q psy14801        100 MVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDT  179 (404)
Q Consensus       100 ~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~q~  179 (404)
                      |+||||+.+++.|+++|+.+||+|+.++++.++   +++++.+++++++.++++++++|.||.+.+.||.++++||++|+
T Consensus        84 ~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql  160 (299)
T TIGR01136        84 LILTMPETMSLERRKLLRAYGAELILTPAEEGM---KGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDT  160 (299)
T ss_pred             EEEEECCCCCHHHHHHHHHcCCEEEEeCCCCCh---HHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999863222   34567788888876456788999999988899999999999999


Q ss_pred             CCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccCccccC
Q psy14801        180 GGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVID  259 (404)
Q Consensus       180 ~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  259 (404)
                      ..+||++|+++|+|++++|++.+++...|.+|+++|+|.+++........        .....+++....+..++...++
T Consensus       161 ~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~~~~d  232 (299)
T TIGR01136       161 DGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPG--------PHKIQGIGAGFIPKILDLSLID  232 (299)
T ss_pred             CCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCC--------CccCCCCCCCCCCccCChhhCC
Confidence            86799999999999999999999999999999999999998655432111        1122334444445555566778


Q ss_pred             cEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCCCCccccc
Q psy14801        260 QWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGVRNYLTKF  323 (404)
Q Consensus       260 ~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~~~~~~~~  323 (404)
                      .++.|+|+|++++++++++.+|+++||+||++++++.++.++. .++.+||++.||.+.+|.+++
T Consensus       233 ~~~~V~d~e~~~a~~~l~~~~gi~~e~ssaa~~a~~~~~~~~~~~~~~~vv~i~~d~g~ky~~~~  297 (299)
T TIGR01136       233 EVITVSDEDAIETARRLAREEGILVGISSGAAVAAALKLAKRLENADKVIVAILPDTGERYLSTG  297 (299)
T ss_pred             EEEEECHHHHHHHHHHHHHHhCceEcchHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccCcc
Confidence            9999999999999999999999999999999999999988764 347899999999999998864

This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.

>PLN00011 cysteine synthase

Probab=100.00  E-value=7.2e-54  Score=409.56  Aligned_cols=302  Identities=37%  Similarity=0.562  Sum_probs=262.5

Q ss_pred             CCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCC-CEEEecCCChHHHHHHHHHHHcC
Q psy14801         19 TVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPG-YTIVEPSSGNTGIGLAMVAAIKG   97 (404)
Q Consensus        19 ~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~ssGN~g~a~A~~a~~~G   97 (404)
                      +.+|+|||++++++....|.+||+|+|++|||||||||++.+++..++++|.+.|+ ++||++|+||||+|+|++|+.+|
T Consensus        13 ~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G   92 (323)
T PLN00011         13 ELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLACIGAARG   92 (323)
T ss_pred             HHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcC
Confidence            46899999999998877778999999999999999999999999999999998888 78999999999999999999999


Q ss_pred             CeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHH
Q psy14801         98 YKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILR  177 (404)
Q Consensus        98 ~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~  177 (404)
                      ++|+||||..+++.|+++++.+||+|+.++.+  ++ ..+.++.++++.++.++++++++|.||.|+..||.++|+||++
T Consensus        93 ~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~--~~-~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t~~~EI~~  169 (323)
T PLN00011         93 YKVILVMPSTMSLERRIILRALGAEVHLTDQS--IG-LKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWR  169 (323)
T ss_pred             CeEEEEeCCCCCHHHHHHHHHcCCEEEEECCC--cC-hHHHHHHHHHHHHhCCCeEEeccccCCccHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999863  33 2345667888888766678889999999887799999999999


Q ss_pred             HhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccCccc
Q psy14801        178 DTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNV  257 (404)
Q Consensus       178 q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  257 (404)
                      |+..+||++|+++|+|||++|++.+++...|..|+|+|+|.++..+....        ...+.+++++....+..++...
T Consensus       170 q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~--------~~~~~~~gl~~~~~~~~~~~~~  241 (323)
T PLN00011        170 DSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQ--------PGPHLIQGIGSGIIPFNLDLTI  241 (323)
T ss_pred             hcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCC--------CCCCCCCCCCCCCCCcccChhh
Confidence            98767999999999999999999999999999999999999986543211        1123455565544455455566


Q ss_pred             cCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCCCCccccccchhHHhh
Q psy14801        258 IDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGVRNYLTKFISDEWMIE  331 (404)
Q Consensus       258 ~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~~~~~~~~~~~~~~~~  331 (404)
                      +|+++.|+|.|++++++++++++|+++|+++|++++++.+.+++. .++.+||+|.|+++.+|.++.+.+.|...
T Consensus       242 ~d~~v~V~d~e~~~a~~~l~~~~Gi~~~~ssga~laaa~~~~~~~~~~~~~vv~i~~d~G~ky~~~~~~~~~~~~  316 (323)
T PLN00011        242 VDEIIQVTGEEAIETAKLLALKEGLLVGISSGAAAAAALKVAKRPENAGKLIVVIFPSGGERYLSTKLFESVRYE  316 (323)
T ss_pred             CCeEEEECHHHHHHHHHHHHHhcCCeEcccHHHHHHHHHHHHHhccCCCCeEEEEECCCccccCChhhhHHHHHh
Confidence            789999999999999999999999999999999999999987764 35778999999999999999887777653

>KOG1481|consensus

Probab=100.00  E-value=8.2e-55  Score=383.63  Aligned_cols=317  Identities=34%  Similarity=0.466  Sum_probs=271.2

Q ss_pred             CCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCC
Q psy14801         19 TVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY   98 (404)
Q Consensus        19 ~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~   98 (404)
                      -.+|+|||+++++|++..||+|+.|.|++||.||.|||.|++++..|+++|++-||.+|++.|+||+|+++|..|..+|+
T Consensus        45 ~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg~v~EGtaGsTgIslA~v~~a~Gy  124 (391)
T KOG1481|consen   45 GAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGGTVVEGTAGSTGISLAHVARALGY  124 (391)
T ss_pred             HhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCceEEecCCCccchhHHHhhhhcCc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCC------cEeecCCCCCCChhhHHhhHH
Q psy14801         99 KMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKN------AVVLDQFRNPNNPLSHYETTA  172 (404)
Q Consensus        99 ~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~------~~~~~e~~np~~si~g~~~~a  172 (404)
                      +|+|+||++.+.+|.+.++.+||+|+.|+.. .+.+....++.|++.+.+.+.      .+|.+||.|++|+..||.+++
T Consensus       125 k~~I~mPddqs~eK~~ile~LGA~V~rV~pa-~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHyetTG  203 (391)
T KOG1481|consen  125 KCHIYMPDDQSQEKSDILEFLGAEVHRVPPA-PIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHYETTG  203 (391)
T ss_pred             ceEEECCChHHHHHHHHHHHhcceeeecCCc-CccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHhcCcC
Confidence            9999999999999999999999999999974 566677777777776654322      367799999999999999999


Q ss_pred             HHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCC-cEEEEEcCCCCccccc---------CCCCCCCCCCCcccccc
Q psy14801        173 EEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPS-CKLVGADPFGSILAQP---------QSLNDVPENQISYNEVE  242 (404)
Q Consensus       173 ~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~-~~vi~V~p~~~~~~~~---------~~~~~~~~~~~~~~~~~  242 (404)
                      +||+.|..++.|.++..+|+|||++|++.+++.+.++ +.+...+|.++-.+..         .+..........++..+
T Consensus       204 PEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~dti~E  283 (391)
T KOG1481|consen  204 PEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQVDTITE  283 (391)
T ss_pred             cHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCCcchhhh
Confidence            9999999999999999999999999999999999988 8899999999843211         11111111223456677


Q ss_pred             CCCCccccccc--CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcc
Q psy14801        243 GIGYSFAATTL--DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYL  320 (404)
Q Consensus       243 ~i~~~~~~~~~--~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~  320 (404)
                      |++...+..++  ...+.|..+.++|+++..+.+.|..++|+|+|                                   
T Consensus       284 GIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr~Ll~~dGLFvG-----------------------------------  328 (391)
T KOG1481|consen  284 GIGINRITGNFQMAEDLIDDAMRVTDEQAINMSRYLLDNDGLFVG-----------------------------------  328 (391)
T ss_pred             cccccccccccccchhhhhhheecChHHHHHHHHHhhhcCceEec-----------------------------------
Confidence            77776665555  34567888899999998877777666655544                                   


Q ss_pred             ccccchhHHhhcCccCcHHHHHHhccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhccCCHHHHHHcCCCC
Q psy14801        321 TKFISDEWMIEKGFLDEAEELEEMIHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLD  395 (404)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~g~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~~~~~~w~~~~~~~~  395 (404)
                                              .||..|++||+++|+.++||++||||+||+|.||+|++|++.+++.+++.+
T Consensus       329 ------------------------sSsa~N~VaAv~vAk~LgpG~~iVtilCDsG~rh~sk~~~~~~l~~~~l~p  379 (391)
T KOG1481|consen  329 ------------------------SSSALNCVAAVRVAKTLGPGHTIVTILCDSGSRHLSKLFSESFLESKKLSP  379 (391)
T ss_pred             ------------------------chhhHHHHHHHHHHHhcCCCceEEEEEeCCcchHHHHhcCHHHHhhcCCCc
Confidence                                    456668899999999999999999999999999999999999999999865

>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase

Probab=100.00  E-value=6.4e-53  Score=398.93  Aligned_cols=290  Identities=50%  Similarity=0.757  Sum_probs=254.6

Q ss_pred             CCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEE
Q psy14801         22 GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV  101 (404)
Q Consensus        22 g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~  101 (404)
                      |+|||+++++|++..|++||+|+|++|||||||+|++.+++..+.++|..+++++|+++|+||||+|+|++|+++|++|+
T Consensus         1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~   80 (291)
T cd01561           1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTTIIEPTSGNTGIGLAMVAAAKGYRFI   80 (291)
T ss_pred             CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCeEE
Confidence            68999999999988889999999999999999999999999999999987788899999999999999999999999999


Q ss_pred             EEecCCCCHHHHHHHHHcCCEEEEeCCCCCC-CChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHHHhC
Q psy14801        102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSY-DHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTG  180 (404)
Q Consensus       102 iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~-~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~q~~  180 (404)
                      ||||..+++.|+++++.+||+|+.++..  + +..+++.+.++++.++.++++|+++|.||.+...|+.++++||++|+.
T Consensus        81 i~vp~~~~~~k~~~~~~~Ga~v~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~  158 (291)
T cd01561          81 IVMPETMSEEKRKLLRALGAEVILTPEA--EADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLD  158 (291)
T ss_pred             EEECCCCCHHHHHHHHHcCCEEEEeCCC--CcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999873  3 234556677888887765688889999998765555699999999998


Q ss_pred             CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccCccccCc
Q psy14801        181 GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQ  260 (404)
Q Consensus       181 ~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  260 (404)
                      +.||++|+++|+|++++|++.+++...|.++||+|+|.+++.+...        ......+.+++....+..++..+.+.
T Consensus       159 ~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~--------~~~~~~~~gi~~~~~~~~~~~~~~~~  230 (291)
T cd01561         159 GKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGG--------PPGPHKIEGIGAGFIPENLDRSLIDE  230 (291)
T ss_pred             CCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCC--------CCCCCcCCCCCCCCCCCccCchhCce
Confidence            7799999999999999999999999999999999999998765111        11223445666555555566667899


Q ss_pred             EEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCccc
Q psy14801        261 WGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT  321 (404)
Q Consensus       261 ~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~  321 (404)
                      ++.|+|.|++++++.+++++|+++||+||.+++++.++.++..++.+||+|.||++.+|++
T Consensus       231 ~~~V~d~e~~~a~~~l~~~~gi~~epssa~a~a~~~~~~~~~~~~~~vv~v~~~~g~ky~~  291 (291)
T cd01561         231 VVRVSDEEAFAMARRLAREEGLLVGGSSGAAVAAALKLAKRLGPGKTIVTILPDSGERYLS  291 (291)
T ss_pred             eEEECHHHHHHHHHHHHHHhCeeEcccHHHHHHHHHHHHHhcCCCCeEEEEECCCccccCC
Confidence            9999999999999999999999999999999999999887766788999999999999864

CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.

>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-50  Score=378.27  Aligned_cols=292  Identities=22%  Similarity=0.283  Sum_probs=244.9

Q ss_pred             CCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcC
Q psy14801         18 PTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKG   97 (404)
Q Consensus        18 ~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G   97 (404)
                      ....-+|||+.++.|++.+|++||+|+|++||+||||.||+++.++...+.+..+  ..||++|+||||+++|++|+++|
T Consensus        20 ~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~~--~gViaaSaGNHaQGvA~aa~~lG   97 (347)
T COG1171          20 KGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEERA--AGVIAASAGNHAQGVAYAAKRLG   97 (347)
T ss_pred             hCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhhc--CceEEecCCcHHHHHHHHHHHhC
Confidence            3344599999999999999999999999999999999999999998875333222  56999999999999999999999


Q ss_pred             CeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHH
Q psy14801         98 YKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILR  177 (404)
Q Consensus        98 ~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~  177 (404)
                      ++++||||.++|..|.+.++.|||+|++++.  +||+   +.+.+++++++. +..|+++|++|. .+.|+.|+|+||++
T Consensus        98 i~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~--~~dd---a~~~a~~~a~~~-G~~~i~pfD~p~-viAGQGTi~lEile  170 (347)
T COG1171          98 IKATIVMPETTPKIKVDATRGYGAEVILHGD--NFDD---AYAAAEELAEEE-GLTFVPPFDDPD-VIAGQGTIALEILE  170 (347)
T ss_pred             CCEEEEecCCCcHHHHHHHHhcCCEEEEECC--CHHH---HHHHHHHHHHHc-CCEEeCCCCCcc-eeecccHHHHHHHH
Confidence            9999999999999999999999999999986  5654   466799999887 678899999997 89999999999999


Q ss_pred             HhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCC-CCCCCC-CCCccccccCCCCcc---cccc
Q psy14801        178 DTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQS-LNDVPE-NQISYNEVEGIGYSF---AATT  252 (404)
Q Consensus       178 q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~-~~~~~~-~~~~~~~~~~i~~~~---~~~~  252 (404)
                      |+...||.+|||+|+||+++||+.+++...|.+|||+|+|++++.+...- .+.... .....+.++|+....   .+..
T Consensus       171 q~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~g~~tf~  250 (347)
T COG1171         171 QLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPGDLTFE  250 (347)
T ss_pred             hccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHHHHHHcCCceeecCCCCccccccccCCCCHHHHH
Confidence            99866899999999999999999999999999999999999987543211 111111 112344555654332   2233


Q ss_pred             cCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14801        253 LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRN  318 (404)
Q Consensus       253 ~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~  318 (404)
                      +.+.++|+++.|+|.|+..+++.++++++++++|+++.+++++.++..+..++.+|++|.+|+...
T Consensus       251 i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~EpaGAlalAal~~~~~~~~~g~~v~~ilSGgN~d  316 (347)
T COG1171         251 ILRELVDDIVLVDEDEICAAMRDLFERTKIIAEPAGALALAALLAGKIEPLQGKTVVVILSGGNID  316 (347)
T ss_pred             HHHHcCCcEEEECHHHHHHHHHHHHhcCCeeccccHHHHHHHHHhhhhhhcCCCeEEEEecCCCCC
Confidence            456788999999999999999999999999999999999999998877644566699999988643

>PRK06608 threonine dehydratase; Provisional

Probab=100.00  E-value=6.2e-50  Score=383.51  Aligned_cols=304  Identities=19%  Similarity=0.231  Sum_probs=245.8

Q ss_pred             cCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHc
Q psy14801         17 TPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIK   96 (404)
Q Consensus        17 ~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~   96 (404)
                      +...+++|||+++++|++.+|++||+|+|++|||||||||++.+++.++.++|.+.  ++||++|+||||+|+|++|+.+
T Consensus        17 i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~--~~vv~~SsGN~g~alA~~a~~~   94 (338)
T PRK06608         17 IKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLP--DKIVAYSTGNHGQAVAYASKLF   94 (338)
T ss_pred             HhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcC--CeEEEECCCHHHHHHHHHHHHc
Confidence            44567899999999999988999999999999999999999999999999988743  5899999999999999999999


Q ss_pred             CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHH
Q psy14801         97 GYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEIL  176 (404)
Q Consensus        97 G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~  176 (404)
                      |++|+||||..+++.|+++++.+||+|+.++.   .   ++..+.+++ .++ ++.||+++|.||.+ +.|+.++++||+
T Consensus        95 G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~---~~~~~~a~~-~~~-~~~~~~~~~~~~~~-~~g~~t~a~Ei~  165 (338)
T PRK06608         95 GIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---R---QEAEEKAKE-DEE-QGFYYIHPSDSDST-IAGAGTLCYEAL  165 (338)
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---H---HHHHHHHHH-HHh-CCCEEcCCCCCHHH-hccHHHHHHHHH
Confidence            99999999999999999999999999999974   2   234555666 443 46788999999974 678999999999


Q ss_pred             HHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC-CCCCCCC-CCCccccccCCCCccccc-cc
Q psy14801        177 RDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ-SLNDVPE-NQISYNEVEGIGYSFAAT-TL  253 (404)
Q Consensus       177 ~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~-~~~~~~~-~~~~~~~~~~i~~~~~~~-~~  253 (404)
                      +|+..+||++|+++|+|++++|++.+++...+.++||+|+|.+++..... ..+.... .....+..++++.+.... .+
T Consensus       166 ~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~~~~~~~~~~  245 (338)
T PRK06608        166 QQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLSVSARTF  245 (338)
T ss_pred             HhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChHHHHHHHcCCeEeCCCCCCCeecccCCCCCCHHHH
Confidence            99987799999999999999999999999999999999999988532110 0011000 011123344443322111 11


Q ss_pred             C-ccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCC--CCccccccchhHHh
Q psy14801        254 D-RNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGV--RNYLTKFISDEWMI  330 (404)
Q Consensus       254 ~-~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~--~~~~~~~~~~~~~~  330 (404)
                      . ....|.++.|+|.|+..+++.+++++|+++||++|++++++.+++++..++.+||+|.||+.  .+++.+.+.+.|+.
T Consensus       246 ~~~~~~d~~v~Vsd~e~~~a~~~l~~~~gi~vepssaa~laa~~~~~~~~~~~~~Vv~v~tgg~~d~~~~~~~~~~~~~~  325 (338)
T PRK06608        246 EYLKKLDDFYLVEEYEIYYWTAWLTHLLKVICEPSSAINMVAVVNWLKTQSKPQKLLVILSGGNIDPILYNELWKEDYLT  325 (338)
T ss_pred             HHHHhCCCEEEECHHHHHHHHHHHHHHcCcEEchHHHHHHHHHHhhchhhcCCCeEEEEeCCCccCHHHHHHHHHHhhhc
Confidence            1 12357889999999999999999999999999999999999998877667889999999976  56677777777754


Q ss_pred             h
Q psy14801        331 E  331 (404)
Q Consensus       331 ~  331 (404)
                      .
T Consensus       326 ~  326 (338)
T PRK06608        326 I  326 (338)
T ss_pred             C
Confidence            3

>PRK06352 threonine synthase; Validated

Probab=100.00  E-value=1.5e-49  Score=383.40  Aligned_cols=292  Identities=21%  Similarity=0.265  Sum_probs=237.4

Q ss_pred             CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801         15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA   94 (404)
Q Consensus        15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~   94 (404)
                      +++++++|+|||+++++|+...|++||+|+|++|||||||||++.+++.++.++|.    ++||++|+||||+|+|++|+
T Consensus        20 ~~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~----~~vV~aSsGN~G~AlA~~aa   95 (351)
T PRK06352         20 PMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGA----EAVICASTGNTSAAAAAYAT   95 (351)
T ss_pred             CccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCCC----CEEEEECCcHHHHHHHHHHH
Confidence            45778999999999999988888899999999999999999999999999999986    78999999999999999999


Q ss_pred             HcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHH
Q psy14801         95 IKGYKMVVVMPMK-MSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAE  173 (404)
Q Consensus        95 ~~G~~~~iv~p~~-~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~  173 (404)
                      .+|++|+||||+. .+..|+++|+.|||+|+.+++  +++   ++.+.+++++++. +.++.+ +.||.+ +.||.++++
T Consensus        96 ~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~--~~~---~~~~~a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~  167 (351)
T PRK06352         96 RAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQG--NFD---EALKSVRELAETE-AVTLVN-SVNPYR-LEGQKTAAF  167 (351)
T ss_pred             HcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECC--CHH---HHHHHHHHHHHhc-Cccccc-CCCccc-eeeHHHHHH
Confidence            9999999999997 589999999999999999986  343   4466788888764 344444 568875 578899999


Q ss_pred             HHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCC-----cEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcc
Q psy14801        174 EILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPS-----CKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSF  248 (404)
Q Consensus       174 ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~-----~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  248 (404)
                      ||++|+...||++|+|+|+|++++|++.+|+...|.     .|||+|+|.+++..........     ......++....
T Consensus       168 EI~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g~~~~~-----~~~ia~~l~~~~  242 (351)
T PRK06352        168 EICEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGKPIDN-----PETIATAIRIGN  242 (351)
T ss_pred             HHHHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhCCCcCC-----CCcceeEEEeCC
Confidence            999999867999999999999999999999998776     7999999998864322111110     111112211111


Q ss_pred             ccccc--C----ccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh--cCCCCeEEEEecCCCCCcc
Q psy14801        249 AATTL--D----RNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYL  320 (404)
Q Consensus       249 ~~~~~--~----~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~--~~~~~~vv~v~~~~~~~~~  320 (404)
                       +..+  .    +...+..+.|+|.|+.++++++++++|++++|++|++++++.+++++  ..++.+||++.||++.+|.
T Consensus       243 -~~~~~~~~~~~d~~~g~~~~V~d~e~~~a~r~la~~eGi~vepssaaalAa~~~~~~~~~~~~~~~Vv~v~tg~G~~~~  321 (351)
T PRK06352        243 -PASWGLAEAARDESGGYIHSVTDDEIVNAYKKIAAQDGVFIEPGSAASLAGVIQHVANGTIKKGETVVCVFTGNGLKDP  321 (351)
T ss_pred             -CCcHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhcCceEchhHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCCcCCh
Confidence             1111  0    11223478999999999999999999999999999999999998874  4567789999999999887


Q ss_pred             cccc
Q psy14801        321 TKFI  324 (404)
Q Consensus       321 ~~~~  324 (404)
                      +...
T Consensus       322 ~~~~  325 (351)
T PRK06352        322 DTAM  325 (351)
T ss_pred             HHHH
Confidence            7553

>PRK08197 threonine synthase; Validated

Probab=100.00  E-value=2.6e-49  Score=388.09  Aligned_cols=304  Identities=22%  Similarity=0.207  Sum_probs=245.0

Q ss_pred             ccCCCCCCC---------cCCCCCCCCeeecCCCCCCCCC-eEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEE
Q psy14801          8 SNSARNSPF---------TPTVPGKVPLLPQSKQGSILLP-TTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTI   77 (404)
Q Consensus         8 ~~~~~~~~~---------~~~~~g~TPl~~~~~l~~~~g~-~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~v   77 (404)
                      ...||+.+|         +++++|+|||+++++|++.+|. +||+|+|++|||||||||++.+++.++.++|.    ++|
T Consensus        55 ~~~~ry~~~lp~~~~~~~vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~----~~v  130 (394)
T PRK08197         55 ANLWRYHELLPVRDPEHIVSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGV----KHL  130 (394)
T ss_pred             cchhcchhhCCCCCCCCCCccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCC----CEE
Confidence            457777655         4578999999999999888884 99999999999999999999999999999987    789


Q ss_pred             EecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecC
Q psy14801         78 VEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQ  157 (404)
Q Consensus        78 v~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e  157 (404)
                      |++|+||+|+|+|++|+.+|++|+||||.+++..|+++++.+||+|+.+++  +++   +..+.+++++++. ++++.++
T Consensus       131 v~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~--~~~---~~~~~a~~~~~~~-g~~~~~~  204 (394)
T PRK08197        131 AMPTNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAELYLVDG--LIS---DAGKIVAEAVAEY-GWFDVST  204 (394)
T ss_pred             EEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHH---HHHHHHHHHHHhc-CcccccC
Confidence            999999999999999999999999999999999999999999999999986  343   3456677777765 5777889


Q ss_pred             CCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHh-------CCCcEEEEEcCCCCcccccC-CC
Q psy14801        158 FRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEK-------CPSCKLVGADPFGSILAQPQ-SL  228 (404)
Q Consensus       158 ~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~-------~~~~~vi~V~p~~~~~~~~~-~~  228 (404)
                      +.||.+ +.|+.++|+||++|+.++ ||++|+|+|+|++++|++.+|+..       .+..|+++|||+++..+... ..
T Consensus       205 ~~np~~-ieG~~t~a~Ei~eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~  283 (394)
T PRK08197        205 LKEPYR-IEGKKTMGLELAEQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEE  283 (394)
T ss_pred             CCCccc-hhcHHHHHHHHHHHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHHc
Confidence            999984 688999999999999854 999999999999999999999986       36789999999988543211 01


Q ss_pred             CCC--CCCCCccccccCCCCcccc---ccc--CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh
Q psy14801        229 NDV--PENQISYNEVEGIGYSFAA---TTL--DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS  301 (404)
Q Consensus       229 ~~~--~~~~~~~~~~~~i~~~~~~---~~~--~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~  301 (404)
                      +..  .......+...++......   ..+  .+...+..+.|+|+|+.++++++++++|++++|++|++++|+.++.++
T Consensus       284 g~~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaala~~~~l~~~  363 (394)
T PRK08197        284 GKEESEFWEDAHTVAFGIRVPKALGDFLVLDAVRETGGCAIAVSDDAILAAQRELAREEGLFACPEGAATFAAARQLRES  363 (394)
T ss_pred             CCCccccCCCCCceehhhhCCCCCCHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHHhcCCceECchHHHHHHHHHHHHHc
Confidence            100  0000111222232111110   011  123456779999999999999999999999999999999999998875


Q ss_pred             --cCCCCeEEEEecCCCCCcccc
Q psy14801        302 --LRPDQRCVVILADGVRNYLTK  322 (404)
Q Consensus       302 --~~~~~~vv~v~~~~~~~~~~~  322 (404)
                        ..++.+||++.||++.+|.+.
T Consensus       364 ~~~~~~~~Vv~v~tG~g~k~~~~  386 (394)
T PRK08197        364 GWLKGDERVVLFNTGSGLKYPDT  386 (394)
T ss_pred             CCcCCCCcEEEEeCCCCcCchhh
Confidence              456889999999999988654

>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia

Probab=100.00  E-value=3.2e-49  Score=376.10  Aligned_cols=289  Identities=20%  Similarity=0.256  Sum_probs=237.4

Q ss_pred             CCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEE
Q psy14801         23 KVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVV  102 (404)
Q Consensus        23 ~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i  102 (404)
                      +|||++++++++.+|++||+|+|++|||||||||++.+++.++.++|. .++++||++|+||||.|+|++|+.+|++|+|
T Consensus         1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-~~~~~vv~aSsGN~g~alA~~a~~~G~~~~i   79 (316)
T cd06448           1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL-NECVHVVCSSGGNAGLAAAYAARKLGVPCTI   79 (316)
T ss_pred             CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc-ccCCeEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence            699999999988888899999999999999999999999999999885 4558999999999999999999999999999


Q ss_pred             EecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHHHhCC-
Q psy14801        103 VMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGG-  181 (404)
Q Consensus       103 v~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~q~~~-  181 (404)
                      |||..+++.|+++|+.+||+|+.++.+ .+   +...+.+++++++.++.+|+++|.||.+ +.||.++++||++|+.+ 
T Consensus        80 v~p~~~~~~k~~~l~~~GA~v~~~~~~-~~---~~~~~~~~~l~~~~~~~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~  154 (316)
T cd06448          80 VVPESTKPRVVEKLRDEGATVVVHGKV-WW---EADNYLREELAENDPGPVYVHPFDDPLI-WEGHSSMVDEIAQQLQSQ  154 (316)
T ss_pred             EECCCCCHHHHHHHHHcCCEEEEECCc-hH---HHHHHHHHHHHhccCCcEEeCCCCCchh-hccccHHHHHHHHHcccc
Confidence            999999999999999999999999862 12   2344567777776546789999999985 57789999999999986 


Q ss_pred             -CcCEEEEccCCChhHHHHHHHHHHhC-CCcEEEEEcCCCCcccccC-CCCCCCCCCCccccccCCCCcccccc-c--Cc
Q psy14801        182 -KVDMIVLGCGTGGTASGIGRKIKEKC-PSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVEGIGYSFAATT-L--DR  255 (404)
Q Consensus       182 -~~~~vvv~~gsG~~~~Gi~la~~~~~-~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~-~--~~  255 (404)
                       .||++|+|+|+|++++|++.+|+... |.+++|+|+|.+++.+... ..+.........+.+.+++....+.. +  ..
T Consensus       155 ~~~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~  234 (316)
T cd06448         155 EKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQ  234 (316)
T ss_pred             CCCCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHH
Confidence             59999999999999999999999986 9999999999998543221 11110001112244556655544322 2  22


Q ss_pred             cccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHH----HH---hcCCCCeEEEEecCCCC
Q psy14801        256 NVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQA----AK---SLRPDQRCVVILADGVR  317 (404)
Q Consensus       256 ~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~----lk---~~~~~~~vv~v~~~~~~  317 (404)
                      ...+.++.|+|.|++++++++++.+|+++||+||.+++++.+.    ++   +..++.+||++.||+..
T Consensus       235 ~~~~~~v~Vsd~e~~~a~~~l~~~~gi~~~~ssaa~laa~~~~~~~~~~~~~~~~~~~~Vv~iltg~n~  303 (316)
T cd06448         235 EHNIKSEVVSDRDAVQACLRFADDERILVEPACGAALAVVYSGKILDLQLEVLLTPLDNVVVVVCGGSN  303 (316)
T ss_pred             hcCCeEEEECHHHHHHHHHHHHHHcCceechhHHHHHHHHHhCcchhhhcccccCCCCeEEEEECCCCC
Confidence            3467899999999999999999999999999999999999852    22   35678899999999864

>PRK06721 threonine synthase; Reviewed

Probab=100.00  E-value=7.4e-49  Score=379.06  Aligned_cols=299  Identities=23%  Similarity=0.266  Sum_probs=240.4

Q ss_pred             CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801         15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA   94 (404)
Q Consensus        15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~   94 (404)
                      +.+.+.+|+|||++++++++..|++||+|+|++|||||||||++.+++.++.++|.    ++||++|+||||+|+|++|+
T Consensus        20 ~~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~----~~vV~aSsGN~G~alA~~aa   95 (352)
T PRK06721         20 PDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGS----EAIICASTGNTSASAAAYAA   95 (352)
T ss_pred             CccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC----CEEEEECCcHHHHHHHHHHH
Confidence            34557899999999999988888899999999999999999999999999999987    79999999999999999999


Q ss_pred             HcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHH
Q psy14801         95 IKGYKMVVVMPMK-MSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAE  173 (404)
Q Consensus        95 ~~G~~~~iv~p~~-~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~  173 (404)
                      .+|++|+||||.. .++.|+++|+.+||+|+.+++  +++   ++.+.+++++++. +.++. ++.||.+ +.||.++++
T Consensus        96 ~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~--~~~---~~~~~a~~~~~~~-~~~~~-~~~n~~~-~~G~~t~~~  167 (352)
T PRK06721         96 RLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG--NFD---DALKAVRNIAAEE-PITLV-NSVNPYR-IEGQKTAAF  167 (352)
T ss_pred             HCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHH---HHHHHHHHHHHhC-Cceec-cCCCchh-hhhhhhHHH
Confidence            9999999999997 478999999999999999986  344   3456678888765 34444 4668864 678899999


Q ss_pred             HHHHHhCCCcCEEEEccCCChhHHHH----HHHHHHhC-CCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcc
Q psy14801        174 EILRDTGGKVDMIVLGCGTGGTASGI----GRKIKEKC-PSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSF  248 (404)
Q Consensus       174 ei~~q~~~~~~~vvv~~gsG~~~~Gi----~la~~~~~-~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  248 (404)
                      ||++|+...||++|+++|+|++++|+    +.+++... |..|+|+|+|++++.........     ...+...++....
T Consensus       168 Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~g~~~~-----~~~tia~~l~~~~  242 (352)
T PRK06721        168 EICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKGHVID-----EPETIATAIRIGN  242 (352)
T ss_pred             HHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhhCCcCC-----CCCceeeccccCC
Confidence            99999986799999999999999985    44555553 88999999999886433221111     0111222222111


Q ss_pred             c---cccc--CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh--cCCCCeEEEEecCCCCCccc
Q psy14801        249 A---ATTL--DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLT  321 (404)
Q Consensus       249 ~---~~~~--~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~--~~~~~~vv~v~~~~~~~~~~  321 (404)
                      .   ...+  .+...+.++.|+|.|+.++++++++.+|+++||++|++++++.++.++  ..++.+||++.||++.+|++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~eGi~vepssgaalaa~~~~~~~~~~~~~~~Vv~v~~g~g~k~~~  322 (352)
T PRK06721        243 PASWSYAVEAAEQSHGEIDMVSDEEILHAYRLLAKSEGVFAEPGSNASLAGVMKHVQSGKIKKGETVVAVLTGNGLKDPD  322 (352)
T ss_pred             CCCHHHHHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCcccCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCcCchH
Confidence            0   0001  123567889999999999999999999999999999999999998764  46788999999999999988


Q ss_pred             cccchhHHh
Q psy14801        322 KFISDEWMI  330 (404)
Q Consensus       322 ~~~~~~~~~  330 (404)
                      ...++.|..
T Consensus       323 ~~~~~~~~~  331 (352)
T PRK06721        323 IAISSNTLD  331 (352)
T ss_pred             HHhhhccCC
Confidence            877677743

>PLN02970 serine racemase

Probab=100.00  E-value=2.6e-49  Score=378.95  Aligned_cols=290  Identities=21%  Similarity=0.261  Sum_probs=234.5

Q ss_pred             cCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHc
Q psy14801         17 TPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIK   96 (404)
Q Consensus        17 ~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~   96 (404)
                      +...+++|||++++++++.+|++||+|+|++|||||||||++.+++..+.+++..   ++||++|+||||+|+|++|+.+
T Consensus        21 i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~~---~~vv~aSsGN~g~alA~~a~~~   97 (328)
T PLN02970         21 IAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQAE---KGVVTHSSGNHAAALALAAKLR   97 (328)
T ss_pred             HhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhcC---CeEEEECCcHHHHHHHHHHHHc
Confidence            4456799999999999988889999999999999999999999999988755431   6799999999999999999999


Q ss_pred             CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHH
Q psy14801         97 GYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEIL  176 (404)
Q Consensus        97 G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~  176 (404)
                      |++|+||||+.+++.|+++|+.+||+|+.++.  +++   .+.+.+++++++ ++.+|+++|.||. .+.|+.++|+||+
T Consensus        98 G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~--~~~---~~~~~a~~la~~-~g~~~~~~~~n~~-~~~g~~t~g~Ei~  170 (328)
T PLN02970         98 GIPAYIVVPKNAPACKVDAVIRYGGIITWCEP--TVE---SREAVAARVQQE-TGAVLIHPYNDGR-VISGQGTIALEFL  170 (328)
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEeCC--CHH---HHHHHHHHHHHh-cCCEEeCCCCCcc-hhhehHHHHHHHH
Confidence            99999999999999999999999999999986  333   445668888876 4678899999997 5678999999999


Q ss_pred             HHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC-CCCCCCCCCCccccccCCCCcc--ccccc
Q psy14801        177 RDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVEGIGYSF--AATTL  253 (404)
Q Consensus       177 ~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~--~~~~~  253 (404)
                      +|+. .||++|+++|+|++++|++.+++...|.+|||+|+|.+++.+... ..+.........+...+++...  .....
T Consensus       171 ~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~~~~~~~~~~  249 (328)
T PLN02970        171 EQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAAQSKAAGEIITLPVTNTIADGLRASLGDLTWPV  249 (328)
T ss_pred             Hhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHHHHHHHcCCceeCCCCCCccccccCCcCHHHHHH
Confidence            9997 699999999999999999999999999999999999998643211 0111000111123334433221  11112


Q ss_pred             CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhc---CC-CCeEEEEecCCCC
Q psy14801        254 DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSL---RP-DQRCVVILADGVR  317 (404)
Q Consensus       254 ~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~---~~-~~~vv~v~~~~~~  317 (404)
                      .....++++.|+|.|+.++++++++++|+++||++|++++++.+.+.+.   .+ +.+|+++.||+..
T Consensus       250 ~~~~~d~~v~V~d~e~~~a~~~la~~~gi~ve~s~aa~laaa~~~~~~~~~~~~~~~~vv~v~~Ggn~  317 (328)
T PLN02970        250 VRDLVDDVITVDDKEIIEAMKLCYERLKVVVEPSGAIGLAAALSDSFRSNPAWKGCKNVGIVLSGGNV  317 (328)
T ss_pred             HHhhCCEEEEECHHHHHHHHHHHHHhcCcEEeHHHHHHHHHHHhCcccccccccCCCeEEEEECCCCC
Confidence            2456789999999999999999999999999999999999977644331   12 4789999999754

>PRK07591 threonine synthase; Validated

Probab=100.00  E-value=2.7e-49  Score=389.83  Aligned_cols=305  Identities=18%  Similarity=0.204  Sum_probs=246.5

Q ss_pred             ccCCCCCCCc--------CCCCCCCCeeecCCCCCCCCC-eEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEE
Q psy14801          8 SNSARNSPFT--------PTVPGKVPLLPQSKQGSILLP-TTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIV   78 (404)
Q Consensus         8 ~~~~~~~~~~--------~~~~g~TPl~~~~~l~~~~g~-~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv   78 (404)
                      ...||+++++        ++++|+|||+++++|++.+|. +||+|+|++|||||||||++.+++..+.+.|.    ++|+
T Consensus        66 ~~~wry~~~lp~~~~~~v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~----~~vv  141 (421)
T PRK07591         66 KSIWRYRDLLPVPADNPVDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGF----TTVA  141 (421)
T ss_pred             cchhcchhhCccccCCCCcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCC----CEEE
Confidence            4577776654        578999999999999988885 99999999999999999999999999999997    7899


Q ss_pred             ecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCC
Q psy14801         79 EPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQF  158 (404)
Q Consensus        79 ~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~  158 (404)
                      ++|+||||+|+|++|+++|++|+||||..++..|+.+++.|||+|+.+++  +|+   +..+.+++++++.+++++.+++
T Consensus       142 ~aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g--~~d---~a~~~a~~~~~~~~~~~~~n~~  216 (421)
T PRK07591        142 CASTGNLANSVAAHAARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDG--NYD---DVNRLCSELANEHEGWGFVNIN  216 (421)
T ss_pred             EeCCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHH---HHHHHHHHHHHhcCCEEEecCC
Confidence            99999999999999999999999999999999999999999999999986  354   3466788888766466777887


Q ss_pred             CCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHh-------CCCcEEEEEcCCCCccccc-CCCC
Q psy14801        159 RNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEK-------CPSCKLVGADPFGSILAQP-QSLN  229 (404)
Q Consensus       159 ~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~-------~~~~~vi~V~p~~~~~~~~-~~~~  229 (404)
                      .||. .+.|+.++++||++|+.++ ||++|+|+|+|++++|++.+|+..       .+..|+++|||+++..... ...+
T Consensus       217 ~~p~-~ieG~~Tia~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g  295 (421)
T PRK07591        217 LRPY-YAEGSKTLGYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKEG  295 (421)
T ss_pred             CCcc-cccchHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHHcC
Confidence            7886 5789999999999999855 999999999999999999999987       5778999999998643321 1111


Q ss_pred             CCCCC-CCccccccCCCCcccc-----cccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh--
Q psy14801        230 DVPEN-QISYNEVEGIGYSFAA-----TTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--  301 (404)
Q Consensus       230 ~~~~~-~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~--  301 (404)
                      ..... ....+...++......     ....+...+.++.|+|.|+.++++++++.+|++++|++|.+++|+.++.++  
T Consensus       296 ~~~~~~~~~~tia~~l~~~~p~~~~~~~~~i~~~~g~~v~Vsd~ei~~a~~~la~~eGi~~epssaaalAal~~l~~~g~  375 (421)
T PRK07591        296 RDVVKPVKPNTIAKSLAIGNPADGPYALDIARRTGGAIEDVTDEEIIEGIKLLARTEGIFTETAGGVTVAVLKKLVEAGK  375 (421)
T ss_pred             CCcccCCCCCchhhheecCCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCeeecchHHHHHHHHHHHHHhCC
Confidence            10000 0011222332111110     011233456789999999999999999999999999999999999998874  


Q ss_pred             cCCCCeEEEEecCCCCCcccc
Q psy14801        302 LRPDQRCVVILADGVRNYLTK  322 (404)
Q Consensus       302 ~~~~~~vv~v~~~~~~~~~~~  322 (404)
                      +.++.+||++.||++.++...
T Consensus       376 i~~~~~VV~i~tG~G~kd~~~  396 (421)
T PRK07591        376 IDPDEETVVYITGNGLKTLEA  396 (421)
T ss_pred             CCCCCeEEEEeCCCccCCHHH
Confidence            567889999999988876543

>PRK12483 threonine dehydratase; Reviewed

Probab=100.00  E-value=8.9e-49  Score=390.87  Aligned_cols=289  Identities=22%  Similarity=0.251  Sum_probs=239.4

Q ss_pred             CCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcC
Q psy14801         18 PTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKG   97 (404)
Q Consensus        18 ~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G   97 (404)
                      ...+++|||+++++|++.+|++||+|+|++|||||||+|+|++++..+.+... +  ..||++|+||||+++|++|+.+|
T Consensus        32 ~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~-~--~GVV~aSaGNha~gvA~aA~~lG  108 (521)
T PRK12483         32 YDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQL-A--RGVITASAGNHAQGVALAAARLG  108 (521)
T ss_pred             hhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHh-c--CcEEEECCCHHHHHHHHHHHHhC
Confidence            35678999999999999999999999999999999999999999987753321 1  45999999999999999999999


Q ss_pred             CeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHH
Q psy14801         98 YKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILR  177 (404)
Q Consensus        98 ~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~  177 (404)
                      ++|+||||..++..|+++++.|||+|++++.  +|+   ++++.+.+++++. +.+|+++|+||. .+.|+.++|+||++
T Consensus       109 i~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~--~~d---~a~~~A~~la~e~-g~~~v~pfdd~~-viaGqgTig~EI~e  181 (521)
T PRK12483        109 VKAVIVMPRTTPQLKVDGVRAHGGEVVLHGE--SFP---DALAHALKLAEEE-GLTFVPPFDDPD-VIAGQGTVAMEILR  181 (521)
T ss_pred             CCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHH---HHHHHHHHHHHhc-CCeeeCCCCChH-HHHHHHHHHHHHHH
Confidence            9999999999999999999999999999975  454   4567788888876 578889999997 67899999999999


Q ss_pred             HhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCC-CCCCCCCCCccccccCCCCccc---cccc
Q psy14801        178 DTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQS-LNDVPENQISYNEVEGIGYSFA---ATTL  253 (404)
Q Consensus       178 q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~---~~~~  253 (404)
                      |++..||++|+|+|+||+++|++.+++...|.+|||+|+|++++.+.... .+.........+.+++++....   +..+
T Consensus       182 Q~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~~~  261 (521)
T PRK12483        182 QHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFEL  261 (521)
T ss_pred             HhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHHHH
Confidence            99867999999999999999999999999999999999999986543211 1110001112233444432221   1122


Q ss_pred             CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcC-CCCeEEEEecCCC
Q psy14801        254 DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLR-PDQRCVVILADGV  316 (404)
Q Consensus       254 ~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~-~~~~vv~v~~~~~  316 (404)
                      ...++|.++.|+|.|+..+++.+++.++++++|++|.+++|+.++.++.. ++.+||+|.+|++
T Consensus       262 ~~~~vd~vv~Vse~ei~~ai~~l~~~~~i~vEpagAaalAal~~~~~~~~~~g~~VV~IlsGgN  325 (521)
T PRK12483        262 CRHYVDEVVTVSTDELCAAIKDIYDDTRSITEPAGALAVAGIKKYAEREGIEGQTLVAIDSGAN  325 (521)
T ss_pred             HHHhCCEEEEECHHHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCC
Confidence            35678999999999999999999999999999999999999998876532 5789999999986

>PRK07409 threonine synthase; Validated

Probab=100.00  E-value=1.4e-48  Score=378.07  Aligned_cols=292  Identities=21%  Similarity=0.251  Sum_probs=238.0

Q ss_pred             CCCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHH
Q psy14801         14 SPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVA   93 (404)
Q Consensus        14 ~~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a   93 (404)
                      ++++++++|+|||+++++|+...|++||+|+|++|||||||||++.+++..+.++|.    ++||++|+||||+++|++|
T Consensus        22 ~~~~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~----~~iv~aSsGN~g~alA~~a   97 (353)
T PRK07409         22 TPVVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGA----KAVICASTGNTSASAAAYA   97 (353)
T ss_pred             cCcccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC----CEEEEECCcHHHHHHHHHH
Confidence            455788999999999999988788899999999999999999999999999999886    7899999999999999999


Q ss_pred             HHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHH
Q psy14801         94 AIKGYKMVVVMPMK-MSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTA  172 (404)
Q Consensus        94 ~~~G~~~~iv~p~~-~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a  172 (404)
                      +.+|++|+||||+. .+..|+++|+.+||+|+.+++  .++   ++.+.++++.++.+ .++.+ +.||.+ +.||.+++
T Consensus        98 ~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~--~~~---~~~~~a~~l~~~~~-~~~~~-~~n~~~-~~g~~t~~  169 (353)
T PRK07409         98 ARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDG--NFD---DALEIVRELAEKYP-VTLVN-SVNPYR-IEGQKTAA  169 (353)
T ss_pred             HHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECC--CHH---HHHHHHHHHHHhcC-ceecC-CCCchh-hhhHHHHH
Confidence            99999999999997 689999999999999999986  344   34566788877654 55555 468875 57889999


Q ss_pred             HHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCC------CcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCC
Q psy14801        173 EEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCP------SCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGY  246 (404)
Q Consensus       173 ~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~------~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  246 (404)
                      +||++|+...||.+|+++|+||+++|++.+++...+      ..|+|+|+|.++..+.......     ...+...++..
T Consensus       170 ~EI~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g~~~~-----~~~ti~~~l~~  244 (353)
T PRK07409        170 FEIVDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRGEPVK-----NPETIATAIRI  244 (353)
T ss_pred             HHHHHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhCCcCC-----CCcceeeeeec
Confidence            999999976799999999999999999999987633      4799999999875432211111     01112222221


Q ss_pred             ccccccc------CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh--cCCCCeEEEEecCCCCC
Q psy14801        247 SFAATTL------DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--LRPDQRCVVILADGVRN  318 (404)
Q Consensus       247 ~~~~~~~------~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~--~~~~~~vv~v~~~~~~~  318 (404)
                      .. +..+      .+...+.++.++|.|++++++++++++|+++||+||.+++++.++.++  ..++.+||++.||++.+
T Consensus       245 ~~-~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~egi~v~pssa~alaa~~~~~~~~~~~~~~~VV~i~tg~g~k  323 (353)
T PRK07409        245 GN-PASWDKAVAARDESGGLIDAVTDEEILEAYRLLARKEGVFCEPASAASVAGLLKAIRAGKIPEGSTVVCTLTGNGLK  323 (353)
T ss_pred             CC-CCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEecCcccc
Confidence            11 1111      122345789999999999999999999999999999999999988776  56788999999999988


Q ss_pred             ccccc
Q psy14801        319 YLTKF  323 (404)
Q Consensus       319 ~~~~~  323 (404)
                      |....
T Consensus       324 ~~~~~  328 (353)
T PRK07409        324 DPDTA  328 (353)
T ss_pred             chHHH
Confidence            87654

>PRK08526 threonine dehydratase; Provisional

Probab=100.00  E-value=4.7e-49  Score=384.93  Aligned_cols=291  Identities=24%  Similarity=0.293  Sum_probs=239.1

Q ss_pred             CcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHH
Q psy14801         16 FTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAI   95 (404)
Q Consensus        16 ~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~   95 (404)
                      .+...+++|||+++++|++..|++||+|+|++|||||||+|++.+++..+.+.+..   ++||++|+||||+++|++|++
T Consensus        13 ~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~~---~gVV~aSaGNhg~avA~aa~~   89 (403)
T PRK08526         13 RISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQKQ---HGVIAASAGNHAQGVAISAKK   89 (403)
T ss_pred             HHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhcC---CEEEEECccHHHHHHHHHHHH
Confidence            34456789999999999998899999999999999999999999999888765431   579999999999999999999


Q ss_pred             cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHH
Q psy14801         96 KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI  175 (404)
Q Consensus        96 ~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei  175 (404)
                      +|++|+||||..++..|+++++.|||+|++++.  +|+   +.++.+.+++++. +.+|+++|.||. .+.|+.++|+||
T Consensus        90 ~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~--~~~---~a~~~a~~~a~~~-g~~~v~p~~~~~-~i~G~gtia~EI  162 (403)
T PRK08526         90 FGIKAVIVMPEATPLLKVSGTKALGAEVILKGD--NYD---EAYAFALEYAKEN-NLTFIHPFEDEE-VMAGQGTIALEM  162 (403)
T ss_pred             cCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECC--CHH---HHHHHHHHHHHhc-CCEeeCCCCCHH-HHhhhHHHHHHH
Confidence            999999999999999999999999999999975  344   4567788888775 578889999996 689999999999


Q ss_pred             HHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC-CCCCCCCCCCccccccCCCCccc-cccc
Q psy14801        176 LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVEGIGYSFA-ATTL  253 (404)
Q Consensus       176 ~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~-~~~~  253 (404)
                      ++|++ .||++|+|+|+||+++|++.+++...|.+|||+|+|++++.+... ..+.........+.+++++.... +..+
T Consensus       163 ~eq~~-~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~~~~~~  241 (403)
T PRK08526        163 LDEIS-DLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDASPINL  241 (403)
T ss_pred             HHhcC-CCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHHHHHHcCCcccCCCCCceeccccCCCCCHHHH
Confidence            99997 699999999999999999999999999999999999998754211 11110011122344555543211 2112


Q ss_pred             --CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14801        254 --DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR  317 (404)
Q Consensus       254 --~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~  317 (404)
                        ....+|+++.|+|.|+.++++.+++++|++++|+++.+++++.+...+..++.+||++.|||.-
T Consensus       242 ~~~~~~vd~~v~V~d~ei~~A~~~l~~~~gi~ve~aga~~lAall~~~~~~~~~~~Vv~ilsGGni  307 (403)
T PRK08526        242 AIILECVDDFVQVDDEEIANAILFLLEKQKIVVEGAGAASVAALLHQKIDLKKGKKIGVVLSGGNI  307 (403)
T ss_pred             HHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEeeHHHHHHHHHHHhCccccccCCeEEEEECCCCC
Confidence              2357799999999999999999999999999999999999987533334467899999999864

>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia

Probab=100.00  E-value=2.7e-48  Score=376.63  Aligned_cols=278  Identities=19%  Similarity=0.224  Sum_probs=226.4

Q ss_pred             CCCCCCCCeeecCCCCCCCC--------CeEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHhCCCCCCC--------
Q psy14801         18 PTVPGKVPLLPQSKQGSILL--------PTTDAKCEFMNP-TGSLKDRAAWRMIED-----AETAGVLKPGY--------   75 (404)
Q Consensus        18 ~~~~g~TPl~~~~~l~~~~g--------~~l~~K~E~~~p-tGS~K~R~a~~~l~~-----a~~~g~~~~~~--------   75 (404)
                      .+++++|||+++++|+..+|        .+||+|+|++|| |||||||++.+++..     +.+.|.++|+.        
T Consensus        47 ~~~~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~  126 (404)
T cd06447          47 SHGIIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASE  126 (404)
T ss_pred             cCCccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhh
Confidence            35699999999999887654        799999999999 999999999998864     77888888876        


Q ss_pred             ---------EEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHH
Q psy14801         76 ---------TIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIA  146 (404)
Q Consensus        76 ---------~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~  146 (404)
                               +||++||||||+|+|++|+.+|++|+||||.++++.|+++|+.|||+|+.++.  +++   +.++.+++++
T Consensus       127 ~~~~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~--~~~---~a~~~a~~la  201 (404)
T cd06447         127 KFRKLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYET--DYS---KAVEEGRKQA  201 (404)
T ss_pred             hhhhcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECC--CHH---HHHHHHHHHH
Confidence                     89999999999999999999999999999999999999999999999999985  343   4466788888


Q ss_pred             HhCCCcEeecCCCCCCChhhHHhhHHHHHHHHhCC---C-----cCEEEEccCCChhHHHHHHHHHHh-CCCcEEEEEcC
Q psy14801        147 SQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGG---K-----VDMIVLGCGTGGTASGIGRKIKEK-CPSCKLVGADP  217 (404)
Q Consensus       147 ~~~~~~~~~~e~~np~~si~g~~~~a~ei~~q~~~---~-----~~~vvv~~gsG~~~~Gi~la~~~~-~~~~~vi~V~p  217 (404)
                      ++.++.+|++++++| +.+.||.++|+||++|+..   +     ||.+|+|+|+||+++||+.+++.. .|+++||+|+|
T Consensus       202 ~~~~~~~~v~~~n~~-~~iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP  280 (404)
T cd06447         202 AADPMCYFVDDENSR-DLFLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEP  280 (404)
T ss_pred             HHCCCeEeCCCCCch-hHHhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence            876566778885444 6889999999999999862   2     568999999999999999999997 78999999999


Q ss_pred             CCCccccc-CCCCCC---C-CC--CCccccccCCCCccccc---ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccc
Q psy14801        218 FGSILAQP-QSLNDV---P-EN--QISYNEVEGIGYSFAAT---TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGS  287 (404)
Q Consensus       218 ~~~~~~~~-~~~~~~---~-~~--~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~  287 (404)
                      .+++.+.. ..-+..   . ..  ....+.+++++......   .+.....|.++.|+|.|+.++++.+++++|+++||+
T Consensus       281 ~~ap~~~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~~~~~~~~vd~~v~Vsd~ei~~a~r~La~~~gi~vepS  360 (404)
T cd06447         281 THSPCMLLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLMEPLLSGIYTVEDDELYRLLAMLKDSENIEVEPS  360 (404)
T ss_pred             CCChHHHHHHHcCCCccccccccCCCccchhhhhcCCCcchhHHHHHHHhCCcEEEECHHHHHHHHHHHHHHcCcEEeHH
Confidence            98864311 011100   0 00  01234455554432211   112456789999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHh
Q psy14801        288 SGTAMHVACQAAKS  301 (404)
Q Consensus       288 tg~tlag~~~~lk~  301 (404)
                      +|.+++++.++.++
T Consensus       361 gAa~lAAl~~~~~~  374 (404)
T cd06447         361 AAAGFTGPAQVLSE  374 (404)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998775

D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.

>PRK07476 eutB threonine dehydratase; Provisional

Probab=100.00  E-value=1.4e-48  Score=373.47  Aligned_cols=289  Identities=19%  Similarity=0.229  Sum_probs=234.5

Q ss_pred             CcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHH
Q psy14801         16 FTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAI   95 (404)
Q Consensus        16 ~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~   95 (404)
                      .+...+++|||+++++|++..|.+||+|+|++|||||||||++.+++.++.++|..   ++||++|+||||+|+|++|+.
T Consensus        12 ~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~~---~gvv~aSsGN~g~alA~~a~~   88 (322)
T PRK07476         12 RIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQERA---RGVVTASTGNHGRALAYAARA   88 (322)
T ss_pred             HHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhhC---CeEEEECCChHHHHHHHHHHH
Confidence            44567899999999999988889999999999999999999999999999888862   349999999999999999999


Q ss_pred             cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHH
Q psy14801         96 KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI  175 (404)
Q Consensus        96 ~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei  175 (404)
                      +|++|+||||+.+++.|+++|+.|||+|+.++.  ++   ++.++.++++.++. +.+|+++|.||.+ +.|+.++++||
T Consensus        89 ~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~--~~---~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t~~~Ei  161 (322)
T PRK07476         89 LGIRATICMSRLVPANKVDAIRALGAEVRIVGR--SQ---DDAQAEVERLVREE-GLTMVPPFDDPRI-IAGQGTIGLEI  161 (322)
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECC--CH---HHHHHHHHHHHHhc-CCEEeCCCCCcce-eechhHHHHHH
Confidence            999999999999999999999999999999985  33   34566788887765 5688899999974 68889999999


Q ss_pred             HHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC-CCCCCCCCCCccccccCC----CC-ccc
Q psy14801        176 LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVEGI----GY-SFA  249 (404)
Q Consensus       176 ~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i----~~-~~~  249 (404)
                      ++|+. ++|++|+++|+|++++|++.+++...|.+|||+|+|.+++.+... ..+.........+...++    +. ...
T Consensus       162 ~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~~~~~~~~  240 (322)
T PRK07476        162 LEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIGLDNRY  240 (322)
T ss_pred             HHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCceeCCCCCCccccccccccCCcHH
Confidence            99997 689999999999999999999999999999999999987532210 001000000111222222    21 112


Q ss_pred             ccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCC-CeEEEEecCCCC
Q psy14801        250 ATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPD-QRCVVILADGVR  317 (404)
Q Consensus       250 ~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~-~~vv~v~~~~~~  317 (404)
                      +........|+++.++|.|+.++++.+++++|++++|+++.+++++...  ...++ .+||++.|+++.
T Consensus       241 ~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~ve~a~a~~laal~~~--~~~~~~~~Vvvi~tGg~~  307 (322)
T PRK07476        241 TFAMCRALLDDVVLLDEAEIAAGIRHAYREERLVVEGAGAVGIAALLAG--KIAARDGPIVVVVSGANI  307 (322)
T ss_pred             HHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCceEeChhHHHHHHHHhC--CcccCCCcEEEEECCCCC
Confidence            2233445678999999999999999999999999999999999998732  23333 799999998865

>PRK06382 threonine dehydratase; Provisional

Probab=100.00  E-value=1.3e-48  Score=384.32  Aligned_cols=307  Identities=21%  Similarity=0.279  Sum_probs=247.1

Q ss_pred             CCCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHH
Q psy14801         14 SPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVA   93 (404)
Q Consensus        14 ~~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a   93 (404)
                      +.++...+++|||+++++|++..|++||+|+|++|||||||||++.+++..+.+.+. .  +.||++|+||||+|+|++|
T Consensus        16 ~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~-~--~gvv~aSsGN~g~a~A~aa   92 (406)
T PRK06382         16 KSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDEL-R--NGVITASAGNHAQGVAYAA   92 (406)
T ss_pred             HHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhcc-C--CeEEEECCCHHHHHHHHHH
Confidence            345667789999999999998889999999999999999999999999988876543 2  3599999999999999999


Q ss_pred             HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHH
Q psy14801         94 AIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAE  173 (404)
Q Consensus        94 ~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~  173 (404)
                      +.+|++|+||||..++..|+++++.|||+|++++.  +++   ++.+.+++++++. +.+|+++|+||. .+.|+.++|+
T Consensus        93 ~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~--~~~---~a~~~a~~la~~~-~~~~v~~~~~~~-~i~g~~t~~~  165 (406)
T PRK06382         93 SINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGR--DYD---EAHRYADKIAMDE-NRTFIEAFNDRW-VISGQGTIGL  165 (406)
T ss_pred             HHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECC--CHH---HHHHHHHHHHHhc-CCEecCccCChH-HHHHHHHHHH
Confidence            99999999999999999999999999999999985  344   4466788888875 678889999997 5789999999


Q ss_pred             HHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCC-CCCCCCCCCccccccCCCCcc---c
Q psy14801        174 EILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQS-LNDVPENQISYNEVEGIGYSF---A  249 (404)
Q Consensus       174 ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~---~  249 (404)
                      ||++|++ .||++|+|+|+||+++|++.+++...|++||++|+|.+++.+.... .+.........+.+++++...   .
T Consensus       166 Ei~eq~~-~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~  244 (406)
T PRK06382        166 EIMEDLP-DLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYPGDL  244 (406)
T ss_pred             HHHHhcC-CCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCccccccCCCccHH
Confidence            9999997 7999999999999999999999999999999999999986532110 011001112234455554432   1


Q ss_pred             ccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC--Cccccccchh
Q psy14801        250 ATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR--NYLTKFISDE  327 (404)
Q Consensus       250 ~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~--~~~~~~~~~~  327 (404)
                      +..+...+.|.++.|+|.|+.++++.+++++|+++||+++.+++++... +...++.+||++.|||..  .++.+.+..+
T Consensus       245 ~~~~~~~~~d~~v~V~d~ei~~a~~~l~~~~gi~~epsga~~laal~~~-~~~~~~~~Vv~i~sGGn~d~~~~~~~~~~~  323 (406)
T PRK06382        245 TFDIAKNYVDDIVTVTEESVSKAIYKLFEREKIVAEPSGAVGLAAIMEG-KVDVKGKKVAIVVSGGNINPLLMSKIIYKE  323 (406)
T ss_pred             HHHHHHHcCCEEEEECHHHHHHHHHHHHHHcCceechHHHHHHHHHHhc-cccCCCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            2223346789999999999999999999999999999988888876432 222356789999998763  3566666666


Q ss_pred             HHhhc
Q psy14801        328 WMIEK  332 (404)
Q Consensus       328 ~~~~~  332 (404)
                      |+.+.
T Consensus       324 ~~~~~  328 (406)
T PRK06382        324 LENLG  328 (406)
T ss_pred             HHhcC
Confidence            65443

>PRK08198 threonine dehydratase; Provisional

Probab=100.00  E-value=1.6e-48  Score=384.81  Aligned_cols=291  Identities=23%  Similarity=0.318  Sum_probs=239.7

Q ss_pred             CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801         15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA   94 (404)
Q Consensus        15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~   94 (404)
                      ..+...+++|||+++++|++.+|++||+|+|++|||||||||++.+++..+.+++.   +++||++|+||||+++|++|+
T Consensus        14 ~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~---~~~vv~aSsGN~g~alA~~a~   90 (404)
T PRK08198         14 ERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEER---ARGVVAASAGNHAQGVAYAAS   90 (404)
T ss_pred             HHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhc---CCEEEEECCCHHHHHHHHHHH
Confidence            34455788999999999998889999999999999999999999999998875543   278999999999999999999


Q ss_pred             HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHH
Q psy14801         95 IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEE  174 (404)
Q Consensus        95 ~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~e  174 (404)
                      .+|++|+||||..++..|+++++.|||+|+.++.  +++   ++++.+.+++++. +.+|+++|.||. .+.|+.++|+|
T Consensus        91 ~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~--~~~---~~~~~a~~~~~~~-g~~~~~~~~~~~-~~~g~~t~a~E  163 (404)
T PRK08198         91 LLGIKATIVMPETAPLSKVKATRSYGAEVVLHGD--VYD---EALAKAQELAEET-GATFVHPFDDPD-VIAGQGTIGLE  163 (404)
T ss_pred             HcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHH---HHHHHHHHHHHhc-CCEecCCCCCcc-HHHHHHHHHHH
Confidence            9999999999999999999999999999999975  343   4567788888775 678899999997 57899999999


Q ss_pred             HHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC-CCCCCCCCCCccccccCCCCc---ccc
Q psy14801        175 ILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVEGIGYS---FAA  250 (404)
Q Consensus       175 i~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~---~~~  250 (404)
                      |++|++ ++|++|+|+|+||+++|++.+++...|.+|+|+|+|.+++.+... ..+............+++...   ..+
T Consensus       164 I~~q~~-~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~~~~~  242 (404)
T PRK08198        164 ILEDLP-DVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRPGDLT  242 (404)
T ss_pred             HHHhCC-CCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCCEecCCCCccccccccCCcCHHH
Confidence            999997 699999999999999999999999999999999999998654211 001100001112223333221   112


Q ss_pred             cccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14801        251 TTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR  317 (404)
Q Consensus       251 ~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~  317 (404)
                      ..+...+.|+++.|+|.|+..+++.+++.+|++++|++|.+++|+.++. +..++.+||++.|++..
T Consensus       243 ~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~g~~~e~sga~~lAal~~~~-~~~~~~~vv~vl~ggn~  308 (404)
T PRK08198        243 FEIIRELVDDVVTVSDEEIARAILLLLERAKLVVEGAGAVSVAALLSGK-LDVKGKKVVAVLSGGNI  308 (404)
T ss_pred             HHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEehHHHHHHHHHHhch-hhcCCCeEEEEECCCCC
Confidence            2233567899999999999999999999999999999999999988764 45578899999998764

>PRK07334 threonine dehydratase; Provisional

Probab=100.00  E-value=7.3e-49  Score=386.02  Aligned_cols=301  Identities=18%  Similarity=0.192  Sum_probs=245.8

Q ss_pred             CcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHH
Q psy14801         16 FTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAI   95 (404)
Q Consensus        16 ~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~   95 (404)
                      .+..++++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.+...   ...||++|+||||+|+|++|+.
T Consensus        16 ~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~---~~~vv~aSsGN~g~alA~~a~~   92 (403)
T PRK07334         16 RLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEER---ARGVIAMSAGNHAQGVAYHAQR   92 (403)
T ss_pred             HHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHh---CCcEEEECCcHHHHHHHHHHHH
Confidence            3455679999999999988888999999999999999999999999998754322   1469999999999999999999


Q ss_pred             cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHH
Q psy14801         96 KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI  175 (404)
Q Consensus        96 ~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei  175 (404)
                      +|++|+||||..+++.|+++++.|||+|+.++.  ++   +++++.+++++++. +.+|+++|.||. .+.||.++|+||
T Consensus        93 ~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~--~~---~~~~~~a~~l~~~~-~~~~~~~~~~~~-~~~g~~t~~~Ei  165 (403)
T PRK07334         93 LGIPATIVMPRFTPTVKVERTRGFGAEVVLHGE--TL---DEARAHARELAEEE-GLTFVHPYDDPA-VIAGQGTVALEM  165 (403)
T ss_pred             cCCCEEEEECCCCCHHHHHHHHHcCCEEEEECc--CH---HHHHHHHHHHHHhc-CCEecCCCCCHH-HHHhHHHHHHHH
Confidence            999999999999999999999999999999974  33   34567788888775 678899999997 569999999999


Q ss_pred             HHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCC---cccccc
Q psy14801        176 LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGY---SFAATT  252 (404)
Q Consensus       176 ~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~  252 (404)
                      ++|+. .||++|+++|+||+++|++.+++...|..|+++|+|++++.+........ ......+.+++++.   ...+..
T Consensus       166 ~~q~~-~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~~-~~~~~~~~~~gi~~~~~~~~~~~  243 (403)
T PRK07334        166 LEDAP-DLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVA-LPCGGSTIAEGIAVKQPGQLTLE  243 (403)
T ss_pred             HhcCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCCC-ccCCCCCccceecCCCccHHHHH
Confidence            99996 79999999999999999999999999999999999999865432111110 01122344555542   233444


Q ss_pred             cCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCC--CCccccccchhHH
Q psy14801        253 LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGV--RNYLTKFISDEWM  329 (404)
Q Consensus       253 ~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~--~~~~~~~~~~~~~  329 (404)
                      +.....|+++.|+|.|+..+++.+++++|++++|++|.+++++.+..++ .++.+||++.||+.  ..++...+...|.
T Consensus       244 ~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~v~~s~a~~~aa~~~~~~~-~~~~~vv~i~~ggn~d~~~l~~il~~~l~  321 (403)
T PRK07334        244 IVRRLVDDILLVSEADIEQAVSLLLEIEKTVVEGAGAAGLAALLAYPER-FRGRKVGLVLSGGNIDTRLLANVLLRGLV  321 (403)
T ss_pred             HHHHhCCeEEEECHHHHHHHHHHHHHhcCCEEechHHHHHHHHHhCchh-cCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5566789999999999999999999999999999999999998876554 36779999999985  3344444444443

>PRK07048 serine/threonine dehydratase; Validated

Probab=100.00  E-value=2.1e-48  Score=372.54  Aligned_cols=289  Identities=19%  Similarity=0.273  Sum_probs=234.5

Q ss_pred             CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801         15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA   94 (404)
Q Consensus        15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~   94 (404)
                      ..++..+++|||++++++++..|++||+|+|++|||||||||++.+++.++.+++..   ++||++|+||||+|+|++|+
T Consensus        16 ~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~---~~vv~aSsGN~g~alA~~a~   92 (321)
T PRK07048         16 ARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQRR---AGVVTFSSGNHAQAIALSAR   92 (321)
T ss_pred             HHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhcC---CcEEEeCCCHHHHHHHHHHH
Confidence            455667889999999999887889999999999999999999999999988754321   57999999999999999999


Q ss_pred             HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHH
Q psy14801         95 IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEE  174 (404)
Q Consensus        95 ~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~e  174 (404)
                      .+|++|+||||.++++.|+++|+.+||+|+.++.  .++   ...+.+++++++. +.+|+++|.||. .+.|+.++++|
T Consensus        93 ~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~--~~~---~~~~~a~~l~~~~-g~~~~~~~~~~~-~~~g~~t~~~E  165 (321)
T PRK07048         93 LLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDR--YTE---DREEIGRRLAEER-GLTLIPPYDHPH-VIAGQGTAAKE  165 (321)
T ss_pred             HcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHH---HHHHHHHHHHHhc-CCEEECCCCCcc-hhhccchHHHH
Confidence            9999999999999999999999999999999985  233   3456688888775 578889999996 57889999999


Q ss_pred             HHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC-CCCCCCCCCCccccccCC-----CCcc
Q psy14801        175 ILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVEGI-----GYSF  248 (404)
Q Consensus       175 i~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i-----~~~~  248 (404)
                      |++|+. .||++|+|+|+|++++|++.+++...|+.+|++|+|++++..... ..+............+++     +...
T Consensus       166 I~~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~~~~~~  244 (321)
T PRK07048        166 LFEEVG-PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHLGNYT  244 (321)
T ss_pred             HHhhcC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhHHHHHHcCCcccCCCCCCcccccccCCccHHH
Confidence            999997 799999999999999999999999999999999999988532110 001000000111122222     1111


Q ss_pred             cccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14801        249 AATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR  317 (404)
Q Consensus       249 ~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~  317 (404)
                      +  .....+.|..+.|+|.|+.++++++++++|+++||++|.+++++.+..++ .++.+||+|.||+..
T Consensus       245 ~--~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~eps~a~~laa~~~~~~~-~~~~~vv~i~tGGn~  310 (321)
T PRK07048        245 F--PIIRRLVDDIVTVSDAELVDAMRFFAERMKIVVEPTGCLGAAAALRGKVP-LKGKRVGVIISGGNV  310 (321)
T ss_pred             H--HHHHHhCCceEEECHHHHHHHHHHHHHhCCceeccHHHHHHHHHHhCchh-cCCCeEEEEeCCCCC
Confidence            1  11235678999999999999999999999999999999999999886554 467899999998754

>TIGR02991 ectoine_eutB ectoine utilization protein EutB

Probab=100.00  E-value=3e-48  Score=369.67  Aligned_cols=288  Identities=18%  Similarity=0.229  Sum_probs=234.2

Q ss_pred             CcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHh-CCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801         16 FTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETA-GVLKPGYTIVEPSSGNTGIGLAMVAA   94 (404)
Q Consensus        16 ~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~-g~~~~~~~vv~~ssGN~g~a~A~~a~   94 (404)
                      .+...+++|||+++++|+..+|++||+|+|++|||||||||++.+++..+.+. +.    .+||++|+||||+|+|++|+
T Consensus        12 ~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~----~~vv~aSsGN~g~alA~~a~   87 (317)
T TIGR02991        12 RISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQRA----AGVVAASTGNHGRALAYAAA   87 (317)
T ss_pred             HHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhccC----CeEEEECCCHHHHHHHHHHH
Confidence            34556799999999999888888999999999999999999999999887543 33    57999999999999999999


Q ss_pred             HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHH
Q psy14801         95 IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEE  174 (404)
Q Consensus        95 ~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~e  174 (404)
                      .+|++|+||||..+++.|+++++.|||+|+.++.  +++   +..+.+++++++. +++|+++|.||. .+.|+.++|+|
T Consensus        88 ~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~---~~~~~a~~~~~~~-g~~~~~~~~n~~-~~~g~~t~a~E  160 (317)
T TIGR02991        88 EEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR--SQD---DAQEEVERLVADR-GLTMLPPFDHPD-IVAGQGTLGLE  160 (317)
T ss_pred             HhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC--CHH---HHHHHHHHHHHhc-CCEeeCCCCChH-HHhhHHHHHHH
Confidence            9999999999999999999999999999999986  343   3456678887765 578999999997 46889999999


Q ss_pred             HHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC-CCCCCCCCCCccccccCC----CC-cc
Q psy14801        175 ILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVEGI----GY-SF  248 (404)
Q Consensus       175 i~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i----~~-~~  248 (404)
                      |++|+. .+|++|+++|+|++++|++.+++...|.+|||+|+|++++.+... ..+.........+.++++    +. ..
T Consensus       161 i~~q~~-~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~~~~~  239 (317)
T TIGR02991       161 VVEQMP-DLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIGLDNR  239 (317)
T ss_pred             HHHhCC-CCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhhccCCCCH
Confidence            999997 589999999999999999999999999999999999876543211 011100011112333322    21 12


Q ss_pred             cccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14801        249 AATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR  317 (404)
Q Consensus       249 ~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~  317 (404)
                      .+..+....+|.++.|+|.|+.++++++++++|++++|+++.+++++.+.  ...++.+||+|.||++.
T Consensus       240 ~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g~~ve~s~a~~~Aal~~~--~~~~~~~vvvvltG~n~  306 (317)
T TIGR02991       240 VTFAMCKALLDEIVLVSEAEIAAGIRHAYAEEREIVEGAGAVGIAALLAG--KIKNPGPCAVIVSGRNI  306 (317)
T ss_pred             HHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCcEEcchHHHHHHHHHcC--ccccCCcEEEEeCCCCC
Confidence            23344456789999999999999999999999999999999999998742  22357789999999865

Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.

>PRK06110 hypothetical protein; Provisional

Probab=100.00  E-value=1.8e-48  Score=372.78  Aligned_cols=290  Identities=20%  Similarity=0.231  Sum_probs=235.7

Q ss_pred             CcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHH
Q psy14801         16 FTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAI   95 (404)
Q Consensus        16 ~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~   95 (404)
                      .+...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+++...  ..||++|+||||+|+|++|+.
T Consensus        14 ~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~--~~vv~aSsGN~g~alA~~a~~   91 (322)
T PRK06110         14 VVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRV--RGVISATRGNHGQSVAFAARR   91 (322)
T ss_pred             HHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCC--ceEEEECCCHHHHHHHHHHHH
Confidence            345667999999999999888899999999999999999999999999998876544  349999999999999999999


Q ss_pred             cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHH
Q psy14801         96 KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI  175 (404)
Q Consensus        96 ~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei  175 (404)
                      +|++|+||||..+++.|+++++.+||+|+.++.  +++   +.++.++++.++. +.+|+++| ||. .+.||.++|+||
T Consensus        92 ~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~--~~~---~~~~~a~~~~~~~-~~~~~~~~-~~~-~~~G~~t~~~Ei  163 (322)
T PRK06110         92 HGLAATIVVPHGNSVEKNAAMRALGAELIEHGE--DFQ---AAREEAARLAAER-GLHMVPSF-HPD-LVRGVATYALEL  163 (322)
T ss_pred             cCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHH---HHHHHHHHHHHhc-CCEEcCCC-CCh-HHhccchHHHHH
Confidence            999999999999999999999999999999964  343   4466788888765 56888888 665 468999999999


Q ss_pred             HHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC-CCCCCCCCCCccccccCCCCccc-cccc
Q psy14801        176 LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVEGIGYSFA-ATTL  253 (404)
Q Consensus       176 ~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~-~~~~  253 (404)
                      ++|+. ++|++|+|+|+|++++|++.+++...|..|+|+|+|.+++.+... ..+.........+...+++.... +..+
T Consensus       164 ~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~  242 (322)
T PRK06110        164 FRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTPDPEAL  242 (322)
T ss_pred             HhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCccHHHH
Confidence            99997 689999999999999999999999999999999999988653211 11110001111233334322111 1122


Q ss_pred             --CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14801        254 --DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR  317 (404)
Q Consensus       254 --~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~  317 (404)
                        .+...++++.|+|.|+.++++++++++|+++|++++.+++++.+..++. ++.+||++.||+..
T Consensus       243 ~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~e~ssaa~laa~~~~~~~~-~~~~Vv~i~tGgn~  307 (322)
T PRK06110        243 EVIRAGADRIVRVTDDEVAAAMRAYFTDTHNVAEGAGAAALAAALQERERL-AGKRVGLVLSGGNI  307 (322)
T ss_pred             HHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEehHHHHHHHHHHhChhhh-CCCcEEEEECCCCC
Confidence              2457899999999999999999999999999999999999998865553 67799999999643

>PRK08329 threonine synthase; Validated

Probab=100.00  E-value=9.4e-48  Score=370.66  Aligned_cols=285  Identities=22%  Similarity=0.259  Sum_probs=234.1

Q ss_pred             ccCCCCCCC--------cCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEe
Q psy14801          8 SNSARNSPF--------TPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVE   79 (404)
Q Consensus         8 ~~~~~~~~~--------~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~   79 (404)
                      ...||+++|        +++++|.|||+++.       .+||+|+|++|||||||||++.+++..+.+.|.    ++||+
T Consensus        41 ~~~wry~~~lP~~~~~~~sl~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~----~~vv~  109 (347)
T PRK08329         41 LDMRRYIDYLPVDEEFLPHLTPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGI----NEVVI  109 (347)
T ss_pred             cchhhhHHhCCCCCCCCCcCCCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCC----CEEEE
Confidence            456777754        45789999999973       489999999999999999999999999999987    78999


Q ss_pred             cCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCC
Q psy14801         80 PSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFR  159 (404)
Q Consensus        80 ~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~  159 (404)
                      +|+||||+|+|++|+++|++|+||||.+++..|+.+++.|||+|+.+++  +++   +..+.+++++++. +.+|++++.
T Consensus       110 aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~--~~~---~~~~~a~~l~~~~-~~~~~~~~~  183 (347)
T PRK08329        110 DSSGNAALSLALYSLSEGIKVHVFVSYNASKEKISLLSRLGAELHFVEG--DRM---EVHEEAVKFSKRN-NIPYVSHWL  183 (347)
T ss_pred             ECCCcHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECC--CHH---HHHHHHHHHHHhc-CCeeccCCC
Confidence            9999999999999999999999999999999999999999999999986  333   3456677777764 557788889


Q ss_pred             CCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhC------CCcEEEEEcCCCCcccccCCCCCCCC
Q psy14801        160 NPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKC------PSCKLVGADPFGSILAQPQSLNDVPE  233 (404)
Q Consensus       160 np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~------~~~~vi~V~p~~~~~~~~~~~~~~~~  233 (404)
                      ||. .+.|+.++++||++|+. .||++|+|+|+|++++|++.+++...      +..|+++|||.++.......      
T Consensus       184 np~-~~eG~~t~~~Ei~eql~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~------  255 (347)
T PRK08329        184 NPY-FLEGTKTIAYEIYEQIG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRS------  255 (347)
T ss_pred             Cch-hhccchhHHHHHHHHcC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhcc------
Confidence            997 46889999999999997 79999999999999999999999863      44699999999875432110      


Q ss_pred             CCCccccccCCCCcccccc-----cCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh--cCCCC
Q psy14801        234 NQISYNEVEGIGYSFAATT-----LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--LRPDQ  306 (404)
Q Consensus       234 ~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~--~~~~~  306 (404)
                       ....+.++++.....+..     ..+...+..+.|+|.|+.++++++++ +|++++|+||.+++|+.++.++  ..++.
T Consensus       256 -~~~~t~a~gi~i~~~~~~~~~~~~l~~~~g~~~~V~d~e~~~a~~~l~~-~Gi~vepssa~a~Aa~~~l~~~g~i~~~~  333 (347)
T PRK08329        256 -KSENKLADGIAIPEPPRKEEMLRALEESNGFCISVGEEETRAALHWLRR-MGFLVEPTSAVALAAYWKLLEEGLIEGGS  333 (347)
T ss_pred             -CCCCceeeeEEeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCceECccHHHHHHHHHHHHHhCCCCCCC
Confidence             111233444433222211     12334567899999999999999986 7999999999999999998876  55788


Q ss_pred             eEEEEecCCCCCc
Q psy14801        307 RCVVILADGVRNY  319 (404)
Q Consensus       307 ~vv~v~~~~~~~~  319 (404)
                      +||++.||++.|.
T Consensus       334 ~Vv~~~TG~glK~  346 (347)
T PRK08329        334 KVLLPLSGSGLKN  346 (347)
T ss_pred             eEEEEeCCCCccC
Confidence            9999999998765

>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate

Probab=100.00  E-value=1.2e-47  Score=368.46  Aligned_cols=293  Identities=24%  Similarity=0.260  Sum_probs=238.9

Q ss_pred             CCCcCCCCCCCCeeecCCCCCCCC-CeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHH
Q psy14801         14 SPFTPTVPGKVPLLPQSKQGSILL-PTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMV   92 (404)
Q Consensus        14 ~~~~~~~~g~TPl~~~~~l~~~~g-~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~   92 (404)
                      .+.+.+.+|+|||+++++|+...+ .+||+|+|++|||||||||++.+++.++.++|.    ++||++|+||||+|+|++
T Consensus        13 ~~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~----~~vv~~SsGN~g~alA~~   88 (324)
T cd01563          13 DDIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGV----KAVACASTGNTSASLAAY   88 (324)
T ss_pred             CCcccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCC----CEEEEeCCCHHHHHHHHH
Confidence            345788999999999999988666 699999999999999999999999999999885    789999999999999999


Q ss_pred             HHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHH
Q psy14801         93 AAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTA  172 (404)
Q Consensus        93 a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a  172 (404)
                      |+.+|++|++|||.++++.|+++|+.+||+|+.++.  +++   ++.+.+++++++.  .+|+++|.||.+ +.||.+++
T Consensus        89 a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~--~~~---~~~~~a~~~~~~~--~~~~~~~~n~~~-~~g~~t~~  160 (324)
T cd01563          89 AARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEG--NFD---DALRLVRELAEEN--WIYLSNSLNPYR-LEGQKTIA  160 (324)
T ss_pred             HHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECC--cHH---HHHHHHHHHHHhc--CeeccCCCCcce-ecchhhhH
Confidence            999999999999999999999999999999999986  343   3456688888765  688899999986 56899999


Q ss_pred             HHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhC------CCcEEEEEcCCCCccccc-CCCCCC--CCCCCcccccc
Q psy14801        173 EEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKC------PSCKLVGADPFGSILAQP-QSLNDV--PENQISYNEVE  242 (404)
Q Consensus       173 ~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~------~~~~vi~V~p~~~~~~~~-~~~~~~--~~~~~~~~~~~  242 (404)
                      +||++|+.. .||.+|+++|+|++++|++.+++...      +..+||+|+|.++..... ...+..  .......+...
T Consensus       161 ~Ei~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~t~~~  240 (324)
T cd01563         161 FEIAEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIAT  240 (324)
T ss_pred             HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHHHHHHcCCCccCcCCCCCceee
Confidence            999999974 69999999999999999999999864      578999999998753321 111100  00011122333


Q ss_pred             CCCCccc---ccc--cCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh--cCCCCeEEEEecCC
Q psy14801        243 GIGYSFA---ATT--LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--LRPDQRCVVILADG  315 (404)
Q Consensus       243 ~i~~~~~---~~~--~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~--~~~~~~vv~v~~~~  315 (404)
                      +++....   +..  +.....+..+.|+|.|+.++++++++.+|+++||+||.+++++.++.++  +.++.+||++.||+
T Consensus       241 gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~l~~~~~~~~~~~Vv~v~tg~  320 (324)
T cd01563         241 AIRIGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLARTEGIFVEPASAASLAGLKKLREEGIIDKGERVVVVLTGH  320 (324)
T ss_pred             eeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCC
Confidence            3332211   111  1123457889999999999999999999999999999999999988766  35678999999998


Q ss_pred             CCC
Q psy14801        316 VRN  318 (404)
Q Consensus       316 ~~~  318 (404)
                      +.+
T Consensus       321 g~~  323 (324)
T cd01563         321 GLK  323 (324)
T ss_pred             ccC
Confidence            865

It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.

>PLN02569 threonine synthase

Probab=100.00  E-value=1.8e-47  Score=379.33  Aligned_cols=306  Identities=16%  Similarity=0.149  Sum_probs=242.6

Q ss_pred             ccCCCCCC-C---------cCCCCCCCCeeecCCCCCC-CCC-eEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCC-CCC
Q psy14801          8 SNSARNSP-F---------TPTVPGKVPLLPQSKQGSI-LLP-TTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVL-KPG   74 (404)
Q Consensus         8 ~~~~~~~~-~---------~~~~~g~TPl~~~~~l~~~-~g~-~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~-~~~   74 (404)
                      ...||+++ +         +++++|+|||+++++|... +|. +||+|+|++|||||||||++..++..+.+.|.. ++.
T Consensus       108 ~g~wry~~~~lP~~~~~~~vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~  187 (484)
T PLN02569        108 SGVWSKKEWVLPEIDDDDIVSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPV  187 (484)
T ss_pred             CCccccccccCCCCCcccceecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCc
Confidence            45688877 3         5678999999999999887 785 999999999999999999999999999887652 234


Q ss_pred             CEEEecCCChHHHHHHHHHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcE
Q psy14801         75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMK-MSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAV  153 (404)
Q Consensus        75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~-~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~  153 (404)
                      ..|+++||||+|.|+|++|+.+|++|+||||++ .+..|+.+++.+||+|+.+++  +|++   +++.++++.++. +++
T Consensus       188 ~~Vv~ASSGN~GaAlAayaa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g--~~d~---a~~~a~e~~~~~-~~~  261 (484)
T PLN02569        188 VGVGCASTGDTSAALSAYCAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDT--DFDG---CMRLIREVTAEL-PIY  261 (484)
T ss_pred             cEEEEeCCcHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECC--CHHH---HHHHHHHHHHHc-CCE
Confidence            679999999999999999999999999999996 888999999999999999986  4554   456677777765 467


Q ss_pred             eecCCCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHhC------CCcEEEEEcCCCCcccccC
Q psy14801        154 VLDQFRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKC------PSCKLVGADPFGSILAQPQ  226 (404)
Q Consensus       154 ~~~e~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~~------~~~~vi~V~p~~~~~~~~~  226 (404)
                      ++++| ||. -+.|+.++|+||++|+.++ ||++|+|+|+|++++|++.+|++..      +..|+++|||+++......
T Consensus       262 ~~n~~-Np~-~ieG~kT~a~EI~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~a  339 (484)
T PLN02569        262 LANSL-NSL-RLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYRA  339 (484)
T ss_pred             ecCCC-Ccc-hhHhHHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHHH
Confidence            77776 997 4689999999999999865 9999999999999999999998852      2349999999998543211


Q ss_pred             -CCCC--CCCCCCccccccCCCCcccccccC------ccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHH
Q psy14801        227 -SLND--VPENQISYNEVEGIGYSFAATTLD------RNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQ  297 (404)
Q Consensus       227 -~~~~--~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~  297 (404)
                       ..+.  ........+.++++.... |....      ....+..+.|+|.|+.+++++ ++.+|++++|+||.+++|+.+
T Consensus       340 ~~~G~~~~~~~~~~~T~A~gi~i~~-P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~-a~~~Gi~vepssAaalAal~k  417 (484)
T PLN02569        340 YKSGWEEFKPVKANPTFASAIQIGD-PVSIDRAVYALKESNGIVEEATEEELMDAQAE-ADKTGMFLCPHTGVALAALKK  417 (484)
T ss_pred             HHcCCCccccCCCCCccchhhccCC-CccHHHHHHHHHHhCCEEEEECHHHHHHHHHH-HHHCCcEECchHHHHHHHHHH
Confidence             0110  000111233444443321 22211      112344689999999999999 888999999999999999998


Q ss_pred             HHHh--cCCCCeEEEEecCCCCCccccc
Q psy14801        298 AAKS--LRPDQRCVVILADGVRNYLTKF  323 (404)
Q Consensus       298 ~lk~--~~~~~~vv~v~~~~~~~~~~~~  323 (404)
                      +.++  ..++.+||++.||++.+|....
T Consensus       418 l~~~g~i~~~~~VV~i~Tg~GlK~~~~~  445 (484)
T PLN02569        418 LRASGVIGPTDRTVVVSTAHGLKFTQSK  445 (484)
T ss_pred             HHHcCCCCCCCcEEEEeCCCcccChhHH
Confidence            8775  4578899999999999886543

>PLN02550 threonine dehydratase

Probab=100.00  E-value=5e-48  Score=387.24  Aligned_cols=290  Identities=21%  Similarity=0.246  Sum_probs=239.1

Q ss_pred             CCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcC
Q psy14801         18 PTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKG   97 (404)
Q Consensus        18 ~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G   97 (404)
                      ...+++|||+++++|++.+|++||+|+|++|||||||+|++.+++..+.+.. ..  ..||++|+||||+++|++|+++|
T Consensus       104 ~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~-~~--~GVV~aSaGNhAqgvA~aA~~lG  180 (591)
T PLN02550        104 YDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQ-LD--KGVICSSAGNHAQGVALSAQRLG  180 (591)
T ss_pred             hccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhc-CC--CCEEEECCCHHHHHHHHHHHHcC
Confidence            3567899999999999999999999999999999999999999998875432 23  34999999999999999999999


Q ss_pred             CeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHH
Q psy14801         98 YKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILR  177 (404)
Q Consensus        98 ~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~  177 (404)
                      ++|+||||..++..|+++++.|||+|++++.  +|++   +.+.|++++++. +.+|+++|+||. .+.|+.++|+||++
T Consensus       181 ika~IvmP~~tp~~Kv~~~r~~GAeVvl~g~--~~de---a~~~A~~la~e~-g~~fi~pfddp~-viaGqgTig~EI~e  253 (591)
T PLN02550        181 CDAVIAMPVTTPEIKWQSVERLGATVVLVGD--SYDE---AQAYAKQRALEE-GRTFIPPFDHPD-VIAGQGTVGMEIVR  253 (591)
T ss_pred             CCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHH---HHHHHHHHHHhc-CCEEECCCCChH-HHHHHHHHHHHHHH
Confidence            9999999999999999999999999999975  4543   466688888775 567889999997 67899999999999


Q ss_pred             HhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCC-CCCCCCCCCccccccCCCCccc---cccc
Q psy14801        178 DTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQS-LNDVPENQISYNEVEGIGYSFA---ATTL  253 (404)
Q Consensus       178 q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~---~~~~  253 (404)
                      |+...+|++|+|+|+||+++|++.+++...|.+|||+|+|.+++.+.... .+.........+..+++.....   ...+
T Consensus       254 Ql~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G~~t~~i  333 (591)
T PLN02550        254 QHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRL  333 (591)
T ss_pred             HcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCccccCCCCCccceeecCCCCHHHHHH
Confidence            99866999999999999999999999999999999999999986543111 1110001112233444432221   1122


Q ss_pred             CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCCC
Q psy14801        254 DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGVR  317 (404)
Q Consensus       254 ~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~~  317 (404)
                      ...++|+++.|+|.|+.++++.+++.++++++|++|.+++|+.++.++. .++.+||+|.||++-
T Consensus       334 ~~~~vD~vV~Vsd~eI~~Ai~~l~e~~givvEpAGA~alAall~~~~~~~~~g~~Vv~vlsGgNi  398 (591)
T PLN02550        334 CRELVDGVVLVSRDAICASIKDMFEEKRSILEPAGALALAGAEAYCKYYGLKDENVVAITSGANM  398 (591)
T ss_pred             HHhhCCEEEEECHHHHHHHHHHHHHHCCCEEeHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCC
Confidence            3567899999999999999999999999999999999999999887642 367799999999863

>PRK02991 D-serine dehydratase; Provisional

Probab=100.00  E-value=8.4e-48  Score=377.63  Aligned_cols=295  Identities=18%  Similarity=0.192  Sum_probs=236.9

Q ss_pred             CCCCCCCCeeecCCCCCCCC--------CeEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHhCCCCCCC--------
Q psy14801         18 PTVPGKVPLLPQSKQGSILL--------PTTDAKCEFMNP-TGSLKDRAAWRMIED-----AETAGVLKPGY--------   75 (404)
Q Consensus        18 ~~~~g~TPl~~~~~l~~~~g--------~~l~~K~E~~~p-tGS~K~R~a~~~l~~-----a~~~g~~~~~~--------   75 (404)
                      ++++++|||++++.+++.+|        .+||+|+|++|| |||||||++.+++..     ++++|.+.|+.        
T Consensus        70 ~~~~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~  149 (441)
T PRK02991         70 TGGIIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASP  149 (441)
T ss_pred             cCCccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcch
Confidence            45689999999999887654        699999999999 999999999998875     45778776664        


Q ss_pred             ---------EEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHH
Q psy14801         76 ---------TIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIA  146 (404)
Q Consensus        76 ---------~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~  146 (404)
                               +||++|+||||+|+|++|+.+|++|+||||.++++.|+++|+.|||+|+.++.  +|+   ++.+.+++++
T Consensus       150 ~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~--~~~---~a~~~A~~la  224 (441)
T PRK02991        150 EFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEG--DYG---VAVEEGRKAA  224 (441)
T ss_pred             hhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHH---HHHHHHHHHH
Confidence                     79999999999999999999999999999999999999999999999999986  444   4466788888


Q ss_pred             HhCCCcEeecCCCCCCChhhHHhhHHHHHHHHhCC--------CcCEEEEccCCChhHHHHHHHHHHh-CCCcEEEEEcC
Q psy14801        147 SQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGG--------KVDMIVLGCGTGGTASGIGRKIKEK-CPSCKLVGADP  217 (404)
Q Consensus       147 ~~~~~~~~~~e~~np~~si~g~~~~a~ei~~q~~~--------~~~~vvv~~gsG~~~~Gi~la~~~~-~~~~~vi~V~p  217 (404)
                      ++.++.+|++++.|| +.+.||.++|+||++|+..        .||.+|||+|+||+++||+.+++.. .|++|||+|+|
T Consensus       225 ~~~~~~~~~~~~~~~-~~iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp  303 (441)
T PRK02991        225 ESDPNCYFIDDENSR-TLFLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEP  303 (441)
T ss_pred             HhcCCeEeCCCCCch-hHHHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            876567788888666 4789999999999999863        3679999999999999999999997 68899999999


Q ss_pred             CCCccccc-CCCCCCCCC------CCccccccCCCCcccc---cccCccccCcEEecChHHHHHHHHHHHHhcCcEeccc
Q psy14801        218 FGSILAQP-QSLNDVPEN------QISYNEVEGIGYSFAA---TTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGS  287 (404)
Q Consensus       218 ~~~~~~~~-~~~~~~~~~------~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~  287 (404)
                      .+++.+.. ...+.....      ....+.+++++.....   ..+.+...+.++.|+|.|+.++++.+++++|+++||+
T Consensus       304 ~ga~~~~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~~~~~~~~~vd~~v~VsD~ei~~a~~~L~~~~gi~vEpS  383 (441)
T PRK02991        304 THSPCMLLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGVYTVSDETLYRLLGLLADTEGIRLEPS  383 (441)
T ss_pred             CCChHHHHHHhcCCCcceeccccCCCCcchhhhhcCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceeeHH
Confidence            99854321 111110000      0122445555443221   1222356789999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHH------h--cC---CCCeEEEEecCCCCC
Q psy14801        288 SGTAMHVACQAAK------S--LR---PDQRCVVILADGVRN  318 (404)
Q Consensus       288 tg~tlag~~~~lk------~--~~---~~~~vv~v~~~~~~~  318 (404)
                      +|.+++++.++.+      +  ++   ++.+||++.|++...
T Consensus       384 ~AaalAa~~~l~~~~~~~~~~~l~~~~~~~~vv~~~~gg~~~  425 (441)
T PRK02991        384 ALAGMAGPVRVCASVAYLQRHGLSEQLKNATHLVWATGGSMV  425 (441)
T ss_pred             HHHHHHHHHHHHhCHHHHHHcCCccccCCCEEEEEECCCCCC
Confidence            9999999976543      2  22   578999999998654

>PRK06815 hypothetical protein; Provisional

Probab=100.00  E-value=6.7e-48  Score=367.99  Aligned_cols=292  Identities=22%  Similarity=0.262  Sum_probs=237.0

Q ss_pred             CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801         15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA   94 (404)
Q Consensus        15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~   94 (404)
                      ..+...+++|||+++++|++..|++||+|+|++|||||||||++.+++..+.++..   ..+||++|+||||+|+|++|+
T Consensus        12 ~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~---~~~vv~aSsGN~g~alA~~a~   88 (317)
T PRK06815         12 QRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQR---QQGVITASSGNHGQGVALAAK   88 (317)
T ss_pred             HHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhc---CceEEEECCChHHHHHHHHHH
Confidence            34455678999999999988888999999999999999999999999986543321   156999999999999999999


Q ss_pred             HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHH
Q psy14801         95 IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEE  174 (404)
Q Consensus        95 ~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~e  174 (404)
                      .+|++|+||||..+++.|+++++.+||+|+.++.  ++   .+....+++++++. +.+|+++|.||. .+.|+.++|+|
T Consensus        89 ~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~--~~---~~~~~~a~~~~~~~-~~~~~~~~~~~~-~~~g~~t~a~E  161 (317)
T PRK06815         89 LAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGG--DA---LNAELAARRAAEQQ-GKVYISPYNDPQ-VIAGQGTIGME  161 (317)
T ss_pred             HhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CH---HHHHHHHHHHHHhc-CCEEecCCCChh-hhcchhHHHHH
Confidence            9999999999999999999999999999999986  23   34456677887764 678889999996 56899999999


Q ss_pred             HHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC-CCCCCCCCCCccccccCCCCcc----c
Q psy14801        175 ILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVEGIGYSF----A  249 (404)
Q Consensus       175 i~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~----~  249 (404)
                      |++|+. .||++|+|+|+|++++|++.+++...|++||++|+|.+++.+... ..+.........+.++++....    .
T Consensus       162 i~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~  240 (317)
T PRK06815        162 LVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVEPGAI  240 (317)
T ss_pred             HHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCcccHH
Confidence            999997 699999999999999999999999999999999999998654221 1111101111223333332221    1


Q ss_pred             ccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14801        250 ATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRN  318 (404)
Q Consensus       250 ~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~  318 (404)
                      +..+...+.+.++.|+|.|+.++++++++.+|+++||+||.+++|+.+..++. ++.+||+|.||++.+
T Consensus       241 ~~~~~~~~~~~~~~V~d~e~~~a~~~la~~~gi~vepssg~alaa~~~~~~~~-~~~~vv~i~tG~~~~  308 (317)
T PRK06815        241 TFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGVALAAALKLAPRY-QGKKVAVVLCGKNIV  308 (317)
T ss_pred             HHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCeEecHHHHHHHHHHhCchhc-CCCcEEEEECCCCCC
Confidence            12233457789999999999999999999999999999999999999877664 678999999998764

>PRK08638 threonine dehydratase; Validated

Probab=100.00  E-value=6.6e-48  Score=368.80  Aligned_cols=292  Identities=21%  Similarity=0.268  Sum_probs=232.5

Q ss_pred             CCCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHH
Q psy14801         14 SPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVA   93 (404)
Q Consensus        14 ~~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a   93 (404)
                      +..+...+++|||+++++|++..|++||+|+|++|||||||||++.+++..+.+....   .+||++|+||||+|+|++|
T Consensus        18 ~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~~---~~vv~~SsGN~g~alA~~a   94 (333)
T PRK08638         18 KQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEKR---KGVVACSAGNHAQGVALSC   94 (333)
T ss_pred             HHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhcC---CeEEEeCCcHHHHHHHHHH
Confidence            3455667899999999999888888999999999999999999999999887653221   5799999999999999999


Q ss_pred             HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHH
Q psy14801         94 AIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAE  173 (404)
Q Consensus        94 ~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~  173 (404)
                      +.+|++|+||||+++++.|+++++.+||+|+.+++  ++   ++.++.+++++++. +.+|+++|.||. .+.|+.++|+
T Consensus        95 a~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~---~~~~~~a~~~a~~~-g~~~~~~~~~~~-~~~g~~t~a~  167 (333)
T PRK08638         95 ALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGD--NF---NDTIAKVEEIVEEE-GRTFIPPYDDPK-VIAGQGTIGL  167 (333)
T ss_pred             HHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECc--CH---HHHHHHHHHHHHhc-CCEEcCcCCCcc-hhccccHHHH
Confidence            99999999999999999999999999999999975  33   34567788888775 568899999997 4688999999


Q ss_pred             HHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCC-CCCCCCCCCccccccCCCCcccccc
Q psy14801        174 EILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQS-LNDVPENQISYNEVEGIGYSFAATT  252 (404)
Q Consensus       174 ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~  252 (404)
                      ||++|+. ++|++|+|+|+|++++|++.+++...|.+|||+|||.+++.+.... .+.........+...++... .|..
T Consensus       168 Ei~~q~~-~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~-~p~~  245 (333)
T PRK08638        168 EILEDLW-DVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGCDVS-RPGN  245 (333)
T ss_pred             HHHhhcC-CCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeeccccCC-CccH
Confidence            9999995 6999999999999999999999999999999999999975322110 01100011111222333211 1222


Q ss_pred             cC----ccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHH-HhcCCCCeEEEEecCCCC
Q psy14801        253 LD----RNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAA-KSLRPDQRCVVILADGVR  317 (404)
Q Consensus       253 ~~----~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~l-k~~~~~~~vv~v~~~~~~  317 (404)
                      ++    ....|.++.|+|.|+.++++++++++|++++++++.+++++.... ++..++.+||+|.||+..
T Consensus       246 ~~~~~~~~~~d~~v~Vsd~ea~~a~~~l~~~~gi~~e~sgA~~~Aa~~~~~~~~~~~~~~vv~v~~Ggn~  315 (333)
T PRK08638        246 LTYEIVRELVDDIVLVSEDEIRNAMKDLIQRNKVVTEGAGALATAALLSGKLDQYIQNKKVVAIISGGNV  315 (333)
T ss_pred             HHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeechhHHHHHHHHHhCCcccccCCCcEEEEECCCCC
Confidence            22    356789999999999999999999999999998877777765321 223367789999998654

>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen

Probab=100.00  E-value=5.1e-48  Score=368.31  Aligned_cols=291  Identities=22%  Similarity=0.315  Sum_probs=240.1

Q ss_pred             CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801         15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA   94 (404)
Q Consensus        15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~   94 (404)
                      +-+...+|+|||+++++|+..+|++||+|+|++|||||||||++.+++.++++.|.   .++||++|+||||+|+|++|+
T Consensus         9 ~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~---~~~iv~~ssGN~g~alA~~a~   85 (304)
T cd01562           9 ARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEER---AKGVVAASAGNHAQGVAYAAK   85 (304)
T ss_pred             HHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhc---CCcEEEECCCHHHHHHHHHHH
Confidence            33456789999999999998888999999999999999999999999999987762   267999999999999999999


Q ss_pred             HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHH
Q psy14801         95 IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEE  174 (404)
Q Consensus        95 ~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~e  174 (404)
                      .+|++|++|||..++..|+++|+.+||+|+.+++  +++   ++++.+++++++. +.+|+++|.||.+ +.|+.++++|
T Consensus        86 ~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~--~~~---~~~~~a~~la~~~-~~~~~~~~~n~~~-~~g~~~~~~E  158 (304)
T cd01562          86 LLGIPATIVMPETAPAAKVDATRAYGAEVVLYGE--DFD---EAEAKARELAEEE-GLTFIHPFDDPDV-IAGQGTIGLE  158 (304)
T ss_pred             HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHH---HHHHHHHHHHHhc-CCEEeCCCCCcch-hccHHHHHHH
Confidence            9999999999999999999999999999999986  333   4567788888875 6788999999974 6788999999


Q ss_pred             HHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCC-CCCCCCCCCccccccCCCCcc---cc
Q psy14801        175 ILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQS-LNDVPENQISYNEVEGIGYSF---AA  250 (404)
Q Consensus       175 i~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~---~~  250 (404)
                      |++|+. .||++|+++|+|+|++|++.+++...|..|||+|+|.+++.+.... .+.............+++...   .+
T Consensus       159 i~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~  237 (304)
T cd01562         159 ILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGELT  237 (304)
T ss_pred             HHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHcCCcccCCCCCcccccccCCCchHHH
Confidence            999997 4999999999999999999999999999999999998875432110 010000011122233333221   11


Q ss_pred             cccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14801        251 TTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR  317 (404)
Q Consensus       251 ~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~  317 (404)
                      ..+.....+..+.++|.|++++++++++++|+++||+||.+++++.++.++. ++.+||+++||++.
T Consensus       238 ~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~a~a~~~~~~~~~-~~~~vv~i~tGG~~  303 (304)
T cd01562         238 FEIIRKLVDDVVTVSEDEIAAAMLLLFEREKLVAEPAGALALAALLSGKLDL-KGKKVVVVLSGGNI  303 (304)
T ss_pred             HHHHHHhCCeEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHhCcccc-CCCeEEEEecCCCC
Confidence            2234456789999999999999999999999999999999999999987776 78899999999863

Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.

>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form

Probab=100.00  E-value=1.1e-47  Score=383.77  Aligned_cols=290  Identities=20%  Similarity=0.250  Sum_probs=240.1

Q ss_pred             cCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHh-CCCCCCCEEEecCCChHHHHHHHHHHH
Q psy14801         17 TPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETA-GVLKPGYTIVEPSSGNTGIGLAMVAAI   95 (404)
Q Consensus        17 ~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~-g~~~~~~~vv~~ssGN~g~a~A~~a~~   95 (404)
                      +...+++|||+++++|++.+|++||+|+|++|||||||+|+|.+++..+.+. +.    ..||++|+||||+++|++|++
T Consensus        11 v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~----~gVV~aSaGNha~~vA~aa~~   86 (499)
T TIGR01124        11 VYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQKA----RGVIAASAGNHAQGVAFSAAR   86 (499)
T ss_pred             hhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhcC----CEEEEECCCHHHHHHHHHHHH
Confidence            3446789999999999998999999999999999999999999999876433 33    579999999999999999999


Q ss_pred             cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHH
Q psy14801         96 KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI  175 (404)
Q Consensus        96 ~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei  175 (404)
                      +|++|+||||.++|..|+++++.+||+|++++.  +|+   ++.+.+++++++. +.+|+++|.||. .+.|+.++|+||
T Consensus        87 ~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~--~~d---~a~~~a~~la~~~-g~~~i~p~~~~~-~i~G~gtig~EI  159 (499)
T TIGR01124        87 LGLKALIVMPETTPDIKVDAVRGFGGEVVLHGA--NFD---DAKAKAIELSQEK-GLTFIHPFDDPL-VIAGQGTLALEI  159 (499)
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCc--CHH---HHHHHHHHHHHhc-CCEeeCCCCChH-HHHhhHHHHHHH
Confidence            999999999999999999999999999999975  444   4567788888875 568889999996 678999999999


Q ss_pred             HHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCC-CCCCCCCCCccccccCCCCccc---cc
Q psy14801        176 LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQS-LNDVPENQISYNEVEGIGYSFA---AT  251 (404)
Q Consensus       176 ~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~---~~  251 (404)
                      ++|+...+|++|+|+|+||+++|++.+++...|.+|||+|+|.+++.+.... .+.........+.+++++...+   +.
T Consensus       160 ~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g~~~~  239 (499)
T TIGR01124       160 LRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETF  239 (499)
T ss_pred             HHhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCceeCCCCCCccCcccCCCccHHHH
Confidence            9999867999999999999999999999999999999999999986542211 0110001112233445433221   22


Q ss_pred             ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcC-CCCeEEEEecCCCC
Q psy14801        252 TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLR-PDQRCVVILADGVR  317 (404)
Q Consensus       252 ~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~-~~~~vv~v~~~~~~  317 (404)
                      .+.+.++|+++.|+|.|+.++++.+++.+|++++|+||.+++|+.++.++.. ++.+||+|.||++-
T Consensus       240 ~~~~~~vd~vv~V~d~ei~~ai~~l~~~~gii~EpagA~~lAal~~~~~~~~~~~~~vv~i~sG~n~  306 (499)
T TIGR01124       240 RLCQQYLDDIVTVDTDEVCAAIKDLFEDTRAVAEPAGALALAGLKKYVALHGIRGQTLVAILSGANM  306 (499)
T ss_pred             HHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEEechHHHHHHHHHHhhhhcCCCCCeEEEEECCCCC
Confidence            2234678999999999999999999999999999999999999999876643 57899999999864

Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.

>PRK08639 threonine dehydratase; Validated

Probab=100.00  E-value=5.4e-48  Score=381.20  Aligned_cols=295  Identities=20%  Similarity=0.262  Sum_probs=237.3

Q ss_pred             CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801         15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA   94 (404)
Q Consensus        15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~   94 (404)
                      ..+...+++|||++++++++..|++||+|+|++|||||||||+|.+++..+.+. ..  .++||++|+||||+++|++|+
T Consensus        17 ~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~-~~--~~~Vv~aSsGN~g~alA~~a~   93 (420)
T PRK08639         17 KRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDE-EL--AAGVVCASAGNHAQGVAYACR   93 (420)
T ss_pred             HHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHH-hh--CCEEEEECccHHHHHHHHHHH
Confidence            445567889999999999988889999999999999999999999999885322 11  167999999999999999999


Q ss_pred             HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHH
Q psy14801         95 IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEE  174 (404)
Q Consensus        95 ~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~e  174 (404)
                      .+|++|+||||..++..|+++++.|||+|+.+...+  +..++.++.+.+++++. +.+|+++|.||. .+.|+.++|+|
T Consensus        94 ~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g--~~~~~a~~~a~~~a~~~-g~~~~~~~~~~~-~~~G~~tig~E  169 (420)
T PRK08639         94 HLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVG--DTFDDSAAAAQEYAEET-GATFIPPFDDPD-VIAGQGTVAVE  169 (420)
T ss_pred             HcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeC--cCHHHHHHHHHHHHHhc-CCcccCCCCChh-HhcchhHHHHH
Confidence            999999999999999999999999999754332111  12345577788888875 578899999997 57899999999


Q ss_pred             HHHHhCCC--cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCC-CCCCCCCCCccccccCCCCccccc
Q psy14801        175 ILRDTGGK--VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQS-LNDVPENQISYNEVEGIGYSFAAT  251 (404)
Q Consensus       175 i~~q~~~~--~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~  251 (404)
                      |++|+...  ||++|+|+|+||+++|++.+++...|++|||+|+|.+++.+.... .+.........+.+++++......
T Consensus       170 I~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~v~~~g~  249 (420)
T PRK08639        170 ILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAVARVGD  249 (420)
T ss_pred             HHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeecccccCCccH
Confidence            99999865  999999999999999999999999999999999999986542211 111001112234455554333211


Q ss_pred             ---ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14801        252 ---TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR  317 (404)
Q Consensus       252 ---~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~  317 (404)
                         .+...+.|+++.|+|.|+.++++.+++++|+++||++|.+++++.++.++. ++.+||+|.||+..
T Consensus       250 ~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~~gi~~e~sga~~lAal~~~~~~~-~~~~vv~v~sGgn~  317 (420)
T PRK08639        250 LTFEILKDVVDDVVLVPEGAVCTTILELYNKEGIVAEPAGALSIAALELYKDEI-KGKTVVCVISGGNN  317 (420)
T ss_pred             HHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhhc-CCCeEEEEeCCCCC
Confidence               123456899999999999999999999999999999999999998765444 77899999998764

>PRK08813 threonine dehydratase; Provisional

Probab=100.00  E-value=1.5e-47  Score=365.18  Aligned_cols=277  Identities=22%  Similarity=0.252  Sum_probs=226.9

Q ss_pred             CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801         15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA   94 (404)
Q Consensus        15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~   94 (404)
                      .+++..+.+|||++++.+      +||+|+|++|||||||||++.+++..+.+.+..   +.||++|+||||+|+|++|+
T Consensus        31 ~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~~---~~VV~aSsGN~G~alA~aa~  101 (349)
T PRK08813         31 ARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGDE---RPVICASAGNHAQGVAWSAY  101 (349)
T ss_pred             HHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCC---CeEEEECCCHHHHHHHHHHH
Confidence            455667889999998765      499999999999999999999999999998863   36999999999999999999


Q ss_pred             HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHH
Q psy14801         95 IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEE  174 (404)
Q Consensus        95 ~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~e  174 (404)
                      .+|++|+||||..+++.|+++++.|||+|+.++.  +|+   +.++.+++++++. +.+|+++|.||. .+.|+.++|+|
T Consensus       102 ~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~--~~~---~a~~~a~~la~~~-g~~~v~~~~np~-~i~G~~Tig~E  174 (349)
T PRK08813        102 RLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGN--SYD---EAYAFARELADQN-GYRFLSAFDDPD-VIAGQGTVGIE  174 (349)
T ss_pred             HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHH---HHHHHHHHHHHhc-CCEEcCccCChH-HHHHHHHHHHH
Confidence            9999999999999999999999999999999975  454   4466788888875 678899999997 67899999999


Q ss_pred             HHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCc---cccc
Q psy14801        175 ILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYS---FAAT  251 (404)
Q Consensus       175 i~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~  251 (404)
                      |++|   .||++|+|+|+||+++|++.+++.  +++|||+|||++++.+.....+.........+.+++++..   ..+.
T Consensus       175 I~e~---~pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~~~s~~g~~~~~~~~~tiadgl~~~~p~~~~~  249 (349)
T PRK08813        175 LAAH---APDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSMARAIRGDLREIAPVATLADGVKVKIPGFLTR  249 (349)
T ss_pred             HHcC---CCCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchHHHHHcCCCcccCCCCceecccccCCcchhHH
Confidence            9976   489999999999999999999985  6789999999998543221111111111123445554432   1222


Q ss_pred             ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14801        252 TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR  317 (404)
Q Consensus       252 ~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~  317 (404)
                      .+.....|.++.|+|.|+.++++.+++++|+++||++|.+++++.+     ..+.+|++|.||+..
T Consensus       250 ~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~vE~aga~alAa~~~-----~~~~~v~~vlsGgN~  310 (349)
T PRK08813        250 RLCSSLLDDVVIVREAELRETLVRLALEEHVIAEGAGALALAAGRR-----VSGKRKCAVVSGGNI  310 (349)
T ss_pred             HHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEEEcHHHHHHHHHH-----hCCCCEEEEECCCCC
Confidence            3345678999999999999999999999999999999999999764     145689999999864

>PRK06260 threonine synthase; Validated

Probab=100.00  E-value=1.2e-47  Score=376.62  Aligned_cols=302  Identities=23%  Similarity=0.227  Sum_probs=240.7

Q ss_pred             ccCCCCCCC-------cCCCCCCCCeeecCCCCCCCCC-eEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEe
Q psy14801          8 SNSARNSPF-------TPTVPGKVPLLPQSKQGSILLP-TTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVE   79 (404)
Q Consensus         8 ~~~~~~~~~-------~~~~~g~TPl~~~~~l~~~~g~-~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~   79 (404)
                      ...||++++       +++++|+|||+++++|+..+|. +||+|+|++|||||||||++.+++.++.++|.    ++||+
T Consensus        45 ~~~wry~~~lp~~~~~v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~----~~vv~  120 (397)
T PRK06260         45 RGVWRYKELLPVKKKIVSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGV----KTVAC  120 (397)
T ss_pred             cceeeehhhcCCCCCcccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCC----CEEEE
Confidence            457777655       4578999999999999888887 99999999999999999999999999999987    78999


Q ss_pred             cCCChHHHHHHHHHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCC
Q psy14801         80 PSSGNTGIGLAMVAAIKGYKMVVVMPMK-MSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQF  158 (404)
Q Consensus        80 ~ssGN~g~a~A~~a~~~G~~~~iv~p~~-~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~  158 (404)
                      +|+||+|+|+|++|+.+|++|+||||.. ++..|+.+++.+||+|+.+++  ++++   +++.+++++++. +.++++++
T Consensus       121 aSsGN~g~alA~~aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~--~~~~---~~~~a~~~~~~~-g~y~~~~~  194 (397)
T PRK06260        121 ASTGNTSASLAAYAARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDG--NFDD---ALDMVVELAKEG-KIYLLNSI  194 (397)
T ss_pred             eCCcHHHHHHHHHHHHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECC--cHHH---HHHHHHHHHhhC-CEEeecCC
Confidence            9999999999999999999999999997 789999999999999999986  4543   456688887765 56666766


Q ss_pred             CCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCC------CcEEEEEcCCCCcccccC-CCCC
Q psy14801        159 RNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCP------SCKLVGADPFGSILAQPQ-SLND  230 (404)
Q Consensus       159 ~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~------~~~vi~V~p~~~~~~~~~-~~~~  230 (404)
                       ||.+ +.|+.++|+||++|+.+ .||++|+|+|+|++++|++.+|+...+      -.|+|+|+|.++...... ..+.
T Consensus       195 -np~~-~~G~~t~a~Ei~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~~a~~~g~  272 (397)
T PRK06260        195 -NPFR-LEGQKTIGFEIADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIVEAIKKGK  272 (397)
T ss_pred             -Cchh-hcchhhHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHHHHHHcCC
Confidence             8974 67899999999999986 699999999999999999999988652      259999999998543211 0011


Q ss_pred             C--CCCCCccccccCC--CCccc-ccc--cCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh--
Q psy14801        231 V--PENQISYNEVEGI--GYSFA-ATT--LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--  301 (404)
Q Consensus       231 ~--~~~~~~~~~~~~i--~~~~~-~~~--~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~--  301 (404)
                      .  .......+...++  +.... +..  ..+...+..+.|+|.|+.++++++++++|++++|+||.+++|+.++.++  
T Consensus       273 ~~~~~~~~~~tia~~i~i~~p~~~~~~~~~l~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaalAa~~~l~~~g~  352 (397)
T PRK06260        273 DEIEPVENPETVATAIRIGNPVNAPKALRAIRESGGTAEAVSDEEILDAQKLLARKEGIGVEPASAASVAGLIKLVEEGV  352 (397)
T ss_pred             CcccccCCCCceeeeeEeCCCCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHhCCCeeCchHHHHHHHHHHHHHcCC
Confidence            0  0000111222222  11111 111  1123446789999999999999999999999999999999999988775  


Q ss_pred             cCCCCeEEEEecCCCCCccc
Q psy14801        302 LRPDQRCVVILADGVRNYLT  321 (404)
Q Consensus       302 ~~~~~~vv~v~~~~~~~~~~  321 (404)
                      ..++.+||++.||++.+...
T Consensus       353 i~~~~~VV~i~tG~glK~~~  372 (397)
T PRK06260        353 IDKDERVVCITTGHLLKDPD  372 (397)
T ss_pred             CCCCCeEEEEeCCCccCchH
Confidence            45788999999999987643

>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase

Probab=100.00  E-value=2.1e-47  Score=373.31  Aligned_cols=292  Identities=19%  Similarity=0.196  Sum_probs=237.9

Q ss_pred             CCCCCCCeeecCCCCCCC--------CCeEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHhCCCCCCC---------
Q psy14801         19 TVPGKVPLLPQSKQGSIL--------LPTTDAKCEFMNP-TGSLKDRAAWRMIED-----AETAGVLKPGY---------   75 (404)
Q Consensus        19 ~~~g~TPl~~~~~l~~~~--------g~~l~~K~E~~~p-tGS~K~R~a~~~l~~-----a~~~g~~~~~~---------   75 (404)
                      +++++|||++++++++.+        +.+||+|+|++|| |||||||++.+++..     +++.|.++|++         
T Consensus        66 ~~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~  145 (431)
T TIGR02035        66 GGIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKK  145 (431)
T ss_pred             CCccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchh
Confidence            489999999999987733        5699999999999 999999999998864     66788877764         


Q ss_pred             --------EEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801         76 --------TIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS  147 (404)
Q Consensus        76 --------~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~  147 (404)
                              +||++||||||+|+|++|+.+|++|+||||++++..|+++|+.|||+|+.++.  +|+   +.++.++++++
T Consensus       146 ~~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~--~~~---~a~~~A~~la~  220 (431)
T TIGR02035       146 FKDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYES--DYG---VAVEEGRKNAD  220 (431)
T ss_pred             hhhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC--CHH---HHHHHHHHHHH
Confidence                    79999999999999999999999999999999999999999999999999986  454   44677888888


Q ss_pred             hCCCcEeecCCCCCCChhhHHhhHHHHHHHHhCC--------CcCEEEEccCCChhHHHHHHHHHHh-CCCcEEEEEcCC
Q psy14801        148 QMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGG--------KVDMIVLGCGTGGTASGIGRKIKEK-CPSCKLVGADPF  218 (404)
Q Consensus       148 ~~~~~~~~~e~~np~~si~g~~~~a~ei~~q~~~--------~~~~vvv~~gsG~~~~Gi~la~~~~-~~~~~vi~V~p~  218 (404)
                      +.++.+|.++ .|+.+.+.||.++|+||++|+..        .||.+++++|+||+++||+.+++.. .|++|||+|+|.
T Consensus       221 ~~~~~~~~d~-~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~  299 (431)
T TIGR02035       221 ADPMCYFVDD-ENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPT  299 (431)
T ss_pred             hcCCeEECCC-CCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeC
Confidence            7666677665 56667889999999999999953        4779999999999999999999997 789999999999


Q ss_pred             CCcccccC-CCCCC----CC--CCCccccccCCCCcccccc---cCccccCcEEecChHHHHHHHHHHHHhcCcEeccch
Q psy14801        219 GSILAQPQ-SLNDV----PE--NQISYNEVEGIGYSFAATT---LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSS  288 (404)
Q Consensus       219 ~~~~~~~~-~~~~~----~~--~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~t  288 (404)
                      +++.+... ..+..    ..  .....+.+++++.......   +.+..+|.++.|+|.|+.++++.+++.+|+++||++
T Consensus       300 ~s~~~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~~~~~~~vd~vv~VsD~ei~~a~~~L~~~egi~vEpSs  379 (431)
T TIGR02035       300 HSPCMLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVGRLMEPLLSGIYTVDDYTLYDLLRILAESEGKRLEPSA  379 (431)
T ss_pred             CCHHHHHHHhcCCCccccccccCCCCCceeccccCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeEcHHH
Confidence            98643211 00100    00  0022455666655433221   123467899999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhc-------C------CCCeEEEEecCCC
Q psy14801        289 GTAMHVACQAAKSL-------R------PDQRCVVILADGV  316 (404)
Q Consensus       289 g~tlag~~~~lk~~-------~------~~~~vv~v~~~~~  316 (404)
                      |++++|+.++++..       .      ++.+.+++.||++
T Consensus       380 aa~laa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~  420 (431)
T TIGR02035       380 LAGMEGPVRLLKYEDSYRYIEGRIGKNLNNATHVVWATGGG  420 (431)
T ss_pred             HHHHHHHHHHHhhhhhHHHHcCccccccCCCeEEEEecCCC
Confidence            99999998876652       1      4678899999885

This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=100.00  E-value=5.7e-48  Score=378.11  Aligned_cols=281  Identities=22%  Similarity=0.287  Sum_probs=233.8

Q ss_pred             CCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEE
Q psy14801         24 VPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVV  103 (404)
Q Consensus        24 TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv  103 (404)
                      |||+++++|++..|++||+|+|++|||||||||++.+++..+.+++..   .+||++|+||||+|+|++|+++|++|+||
T Consensus         1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~---~~vv~aSsGN~g~alA~~a~~~G~~~~iv   77 (380)
T TIGR01127         1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQ---RGVVAASAGNHAQGVAYAAKKFGIKAVIV   77 (380)
T ss_pred             CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccC---CEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            899999999998899999999999999999999999999999887753   47999999999999999999999999999


Q ss_pred             ecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHHHhCCCc
Q psy14801        104 MPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKV  183 (404)
Q Consensus       104 ~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~q~~~~~  183 (404)
                      ||..++..|+++++.|||+|+.++.  +++   ++++.+++++++. +.+|+++|.||. .+.|+.++++||++|+. .|
T Consensus        78 ~p~~~~~~k~~~~~~~GA~V~~~~~--~~~---~a~~~a~~~~~~~-~~~~~~~~~~~~-~~~g~~t~~~Ei~~q~~-~~  149 (380)
T TIGR01127        78 MPESAPPSKVKATKSYGAEVILHGD--DYD---EAYAFATSLAEEE-GRVFVHPFDDEF-VMAGQGTIGLEIMEDIP-DV  149 (380)
T ss_pred             EcCCCcHHHHHHHHHCCCEEEEECC--CHH---HHHHHHHHHHHhc-CCEecCCCCChh-hhhhhHHHHHHHHHhCC-CC
Confidence            9999999999999999999999975  343   4567788888775 678889999997 57899999999999997 79


Q ss_pred             CEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCC-CCCCCCCCCccccccCCCCcc---cccccCccccC
Q psy14801        184 DMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQS-LNDVPENQISYNEVEGIGYSF---AATTLDRNVID  259 (404)
Q Consensus       184 ~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~  259 (404)
                      |++|+|+|+||+++|++.+++...|++|+|+|+|.+++.+.... .+.........+..++++...   .+..+...++|
T Consensus       150 D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd  229 (380)
T TIGR01127       150 DTVIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVD  229 (380)
T ss_pred             CEEEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999986542110 011000111223344443211   12223346789


Q ss_pred             cEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14801        260 QWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGV  316 (404)
Q Consensus       260 ~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~  316 (404)
                      .++.|+|.|+.++++++++++|++++|+++.+++++.+... ..++.+||++.||+.
T Consensus       230 ~~v~V~d~e~~~a~~~l~~~~gi~~e~s~a~~laa~~~~~~-~~~~~~vv~i~sGGn  285 (380)
T TIGR01127       230 DVVTVDEEEIANAIYLLLERHKILAEGAGAAGVAALLEQKV-DVKGKKIAVVLSGGN  285 (380)
T ss_pred             EEEEECHHHHHHHHHHHHHhcCeEechHHHHHHHHHHhCcc-ccCCCeEEEEeCCCC
Confidence            99999999999999999999999999999999999876432 246789999999975

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK06381 threonine synthase; Validated

Probab=100.00  E-value=2.8e-47  Score=364.87  Aligned_cols=287  Identities=22%  Similarity=0.232  Sum_probs=230.2

Q ss_pred             CCCCCCCeeecCCCCCCCC-CeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcC
Q psy14801         19 TVPGKVPLLPQSKQGSILL-PTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKG   97 (404)
Q Consensus        19 ~~~g~TPl~~~~~l~~~~g-~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G   97 (404)
                      ..+|+|||+++++|++.+| .+||+|+|++|||||||||++.+++.+++++|.    ++||++|+||||+|+|++|+.+|
T Consensus        11 ~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~----~~lv~aSsGN~g~alA~~aa~~G   86 (319)
T PRK06381         11 KPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGY----SGITVGTCGNYGASIAYFARLYG   86 (319)
T ss_pred             ccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCC----CEEEEeCCcHHHHHHHHHHHHcC
Confidence            3589999999999998888 599999999999999999999999999999997    78999999999999999999999


Q ss_pred             CeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCC-CCCChhhHHhhHHHHHH
Q psy14801         98 YKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFR-NPNNPLSHYETTAEEIL  176 (404)
Q Consensus        98 ~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~-np~~si~g~~~~a~ei~  176 (404)
                      ++|+||||..++..|+++|+.+||+|+.++.  +++   +.++.++++.++. +.|+.+++. ||..-+.||.++|+||+
T Consensus        87 ~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~--~~~---~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~~G~~t~a~Ei~  160 (319)
T PRK06381         87 LKAVIFIPRSYSNSRVKEMEKYGAEIIYVDG--KYE---EAVERSRKFAKEN-GIYDANPGSVNSVVDIEAYSAIAYEIY  160 (319)
T ss_pred             CcEEEEECCCCCHHHHHHHHHcCCEEEEcCC--CHH---HHHHHHHHHHHHc-CcEecCCCCCCcchHhhhHHHHHHHHH
Confidence            9999999999999999999999999999986  333   4566778887764 567777875 77334689999999999


Q ss_pred             HHhCCCcCEEEEccCCChhHHHHHHHHHHh------CCCcEEEEEcCCCCcccccC-CCCCCCC-CCCcccccc-CCCCc
Q psy14801        177 RDTGGKVDMIVLGCGTGGTASGIGRKIKEK------CPSCKLVGADPFGSILAQPQ-SLNDVPE-NQISYNEVE-GIGYS  247 (404)
Q Consensus       177 ~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~------~~~~~vi~V~p~~~~~~~~~-~~~~~~~-~~~~~~~~~-~i~~~  247 (404)
                      +|+...||++|+++|+|++++|++.+++..      .|..|+++|+|.++...... ..+.... ......... .+...
T Consensus       161 ~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~  240 (319)
T PRK06381        161 EALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEP  240 (319)
T ss_pred             HHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCC
Confidence            999867999999999999999999999998      78899999999887432111 0000000 000000000 01111


Q ss_pred             cc-----c----cccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14801        248 FA-----A----TTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADG  315 (404)
Q Consensus       248 ~~-----~----~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~  315 (404)
                      ..     .    ..+...+.+..+.++|+|++++++++++++|++++|++|.+++|+.++.++...+.+||+++||+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~g~~~~v~d~e~~~a~~~la~~egi~~epssa~alaa~~~~~~~~~~~~~vv~i~tGg  317 (319)
T PRK06381        241 LVSYRSFDGDNALEAIYDSHGYAFGFSDDEMVKYAELLRRMEGLNALPASASALAALVKYLKKNGVNDNVVAVITGR  317 (319)
T ss_pred             cccccCCCHHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHhCCcccCchHHHHHHHHHHHHHcCCCCCcEEEEecCC
Confidence            10     0    00112344578999999999999999999999999999999999999888754457899999986

>PRK08246 threonine dehydratase; Provisional

Probab=100.00  E-value=1.8e-47  Score=363.44  Aligned_cols=287  Identities=23%  Similarity=0.302  Sum_probs=230.8

Q ss_pred             CCCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHH
Q psy14801         14 SPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVA   93 (404)
Q Consensus        14 ~~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a   93 (404)
                      ++.+...+++|||+++++++.+ +.+||+|+|++|||||||||++.+++..+.+     ++++||++|+||||+|+|++|
T Consensus        14 ~~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-----~~~~vv~aSsGN~g~a~A~~a   87 (310)
T PRK08246         14 AQRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-----PAAGVVAASGGNAGLAVAYAA   87 (310)
T ss_pred             HHHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-----cCCeEEEeCCCHHHHHHHHHH
Confidence            3456677899999999999876 7899999999999999999999999988765     237899999999999999999


Q ss_pred             HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHH
Q psy14801         94 AIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAE  173 (404)
Q Consensus        94 ~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~  173 (404)
                      +.+|++|+||||..+++.|+++++.+||+|+.++.  .++   +.++.+++++++. +.+|+++|.||. .+.||.++|+
T Consensus        88 ~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~---~~~~~a~~~~~~~-g~~~~~~~~n~~-~i~g~~t~~~  160 (310)
T PRK08246         88 AALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--EYA---DALEAAQAFAAET-GALLCHAYDQPE-VLAGAGTLGL  160 (310)
T ss_pred             HHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCC--CHH---HHHHHHHHHHHhc-CCEeCCCCCChh-hhcchHHHHH
Confidence            99999999999999999999999999999999985  333   4566778887765 678899999998 4689999999


Q ss_pred             HHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC-CCCCCCCCCCccccccCCCCccc---
Q psy14801        174 EILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVEGIGYSFA---  249 (404)
Q Consensus       174 ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~---  249 (404)
                      ||++|+. .||++|+++|+|++++|++.+++.   ..|+++|+|.+++.+... ..+.............+++....   
T Consensus       161 Ei~eq~~-~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~~~~  236 (310)
T PRK08246        161 EIEEQAP-GVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVGEI  236 (310)
T ss_pred             HHHHhcC-CCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHHHHHcCCcccCCCCCceeccccCCCccHH
Confidence            9999986 799999999999999999999964   369999999998643211 00110001111111222222222   


Q ss_pred             ccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14801        250 ATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR  317 (404)
Q Consensus       250 ~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~  317 (404)
                      +..+.+...+.++.|+|.|+.++++.+++++|++++|++|.+++++.+...+..++.+||+|.||++.
T Consensus       237 ~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~e~s~aa~lAa~~~~~~~~~~~~~vv~i~~g~n~  304 (310)
T PRK08246        237 AFALARAHVVTSVLVSDEAIIAARRALWEELRLAVEPGAATALAALLSGAYVPAPGERVAVVLCGANT  304 (310)
T ss_pred             HHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceeehHHHHHHHHHHhCCccccCCCeEEEEECCCCC
Confidence            22234557899999999999999999999999999999999999986544333467899999999865

>TIGR02079 THD1 threonine dehydratase

Probab=100.00  E-value=1.8e-47  Score=375.51  Aligned_cols=292  Identities=21%  Similarity=0.267  Sum_probs=236.1

Q ss_pred             CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801         15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA   94 (404)
Q Consensus        15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~   94 (404)
                      ..+...+++|||+++++|++.+|++||+|+|++|||||||+|++.+++..+.+.. ..  ..||++|+||||+++|++|+
T Consensus         8 ~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~-~~--~gvv~aSsGN~g~a~A~~a~   84 (409)
T TIGR02079         8 KRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQ-LA--KGVVCASAGNHAQGFAYACR   84 (409)
T ss_pred             HHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHh-hC--CEEEEECccHHHHHHHHHHH
Confidence            3455678899999999999888899999999999999999999999998753322 12  46999999999999999999


Q ss_pred             HcCCeEEEEecCCCCHHHHHHHHHcCCEEE---EeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhH
Q psy14801         95 IKGYKMVVVMPMKMSKEKVYTMKALGAKII---RTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETT  171 (404)
Q Consensus        95 ~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~---~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~  171 (404)
                      ++|++|+||||..++..|+++++.|||+++   .++.  +|   ++.++.+.+++++. +.+|+++|.||. .+.|+.++
T Consensus        85 ~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g~--~~---~~a~~~a~~~~~~~-g~~~~~~~~~~~-~~~g~~ti  157 (409)
T TIGR02079        85 HLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVGD--TF---DQCAAAAREHVEDH-GGTFIPPFDDPR-IIEGQGTV  157 (409)
T ss_pred             HcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeCC--CH---HHHHHHHHHHHHhc-CCEEeCCCCCHh-HhhhhHHH
Confidence            999999999999999999999999999743   3432  34   34567788888775 568889999997 57889999


Q ss_pred             HHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC-CCCCCCCCCCccccccCCCCcccc
Q psy14801        172 AEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVEGIGYSFAA  250 (404)
Q Consensus       172 a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~  250 (404)
                      |+||++|+...||++|+|+|+||+++|++.+++...|.+|||+|+|.+++.+... ..+.........+.+++++....+
T Consensus       158 ~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~~~g  237 (409)
T TIGR02079       158 AAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVKRVG  237 (409)
T ss_pred             HHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCCCCc
Confidence            9999999986699999999999999999999999999999999999998654321 111100011122344554433322


Q ss_pred             c---ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14801        251 T---TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR  317 (404)
Q Consensus       251 ~---~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~  317 (404)
                      .   .+....+|.++.|+|.|+.++++.+++++|+++||++|.+++++.++.++ .++.+||+|.||+.-
T Consensus       238 ~~~~~~~~~~vd~vv~V~d~e~~~a~~~l~~~~gi~ve~agaa~lAa~~~~~~~-~~~~~Vv~ilsGgn~  306 (409)
T TIGR02079       238 DLNFKALKDVPDEVTLVPEGAVCTTILDLYNLEGIVAEPAGALSIAALERLGEE-IKGKTVVCVVSGGNN  306 (409)
T ss_pred             HHHHHHHHHhCCcEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhh-cCCCeEEEEECCCCC
Confidence            1   12245678999999999999999999999999999999999999876544 468899999998764

This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.

>PRK06450 threonine synthase; Validated

Probab=100.00  E-value=4.7e-47  Score=362.99  Aligned_cols=273  Identities=21%  Similarity=0.217  Sum_probs=217.9

Q ss_pred             CcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHH
Q psy14801         16 FTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAI   95 (404)
Q Consensus        16 ~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~   95 (404)
                      ++++++|+|||++.+        +||+|+|++|||||||||++.++++++.+.|.    ++|+++||||+|.|+|++|+.
T Consensus        51 ~vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~----~~vv~aSsGN~g~slA~~aa~  118 (338)
T PRK06450         51 FISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGI----KQISEDSSGNAGASIAAYGAA  118 (338)
T ss_pred             CCCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC----CEEEEECCcHHHHHHHHHHHH
Confidence            578999999999975        59999999999999999999999999999886    789999999999999999999


Q ss_pred             cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHH
Q psy14801         96 KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI  175 (404)
Q Consensus        96 ~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei  175 (404)
                      +|++|+||||++++..|+++|+.|||+|+.+++  ++++       +.+++++. +.+|++++.||. .+.|+.++|+||
T Consensus       119 ~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~--~~~~-------~~~~a~~~-g~~~~~~~~np~-~ieG~kTia~EI  187 (338)
T PRK06450        119 AGIEVKIFVPETASGGKLKQIESYGAEVVRVRG--SRED-------VAKAAENS-GYYYASHVLQPQ-FRDGIRTLAYEI  187 (338)
T ss_pred             cCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHH-------HHHHHHhc-CeEeccCCCCcc-HHHHHHHHHHHH
Confidence            999999999999999999999999999999986  3432       23334443 568888899997 578999999999


Q ss_pred             HHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCC------CcEEEEEcCCCCcccccCCCCCCCC-CCCccccccCCCCc
Q psy14801        176 LRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCP------SCKLVGADPFGSILAQPQSLNDVPE-NQISYNEVEGIGYS  247 (404)
Q Consensus       176 ~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~------~~~vi~V~p~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~  247 (404)
                      ++|+.+ .||++|+|+|+|++++|++.+|+...+      ..|+|+|||+++........+.... .....+...++...
T Consensus       188 ~eql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~  267 (338)
T PRK06450        188 AKDLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVST  267 (338)
T ss_pred             HHHcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeeeecC
Confidence            999984 599999999999999999999998653      2599999999975432111111000 01112223333211


Q ss_pred             cccccc------CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCc
Q psy14801        248 FAATTL------DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNY  319 (404)
Q Consensus       248 ~~~~~~------~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~  319 (404)
                      . |...      .+.. +..+.|+|.|+.++++++++ +|++++|++|.+++|+.++     ++.+||++.|+++.|-
T Consensus       268 ~-p~~~~~~~~~i~~~-g~~v~V~d~ei~~a~~~La~-~Gi~vepssaaalAa~~~l-----~~~~vv~vltG~glK~  337 (338)
T PRK06450        268 R-PFLLDYMVKALSEY-GECIVVSDNEIVEAWKELAK-KGLLVEYSSATVYAAYKKY-----SVNDSVLVLTGSGLKV  337 (338)
T ss_pred             C-CCCHHHHHHHHHhc-CcEEEECHHHHHHHHHHHHH-cCCEEChhHHHHHHHHHHC-----CCCCEEEEeCCCCccC
Confidence            1 1111      1223 67899999999999999987 6999999999999998774     3468999999998663

>PRK09224 threonine dehydratase; Reviewed

Probab=100.00  E-value=3.7e-47  Score=381.61  Aligned_cols=290  Identities=21%  Similarity=0.252  Sum_probs=239.5

Q ss_pred             cCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHh-CCCCCCCEEEecCCChHHHHHHHHHHH
Q psy14801         17 TPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETA-GVLKPGYTIVEPSSGNTGIGLAMVAAI   95 (404)
Q Consensus        17 ~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~-g~~~~~~~vv~~ssGN~g~a~A~~a~~   95 (404)
                      +...+++|||+++++|++.+|++||+|+|++|||||||+|+|.+++..+.+. +.    ..||++|+||||+++|++|++
T Consensus        14 v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~----~gvV~aSaGNha~avA~aa~~   89 (504)
T PRK09224         14 VYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQLA----RGVITASAGNHAQGVALSAAR   89 (504)
T ss_pred             hcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhcC----CEEEEECcCHHHHHHHHHHHH
Confidence            4456789999999999998999999999999999999999999999887533 33    579999999999999999999


Q ss_pred             cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHH
Q psy14801         96 KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI  175 (404)
Q Consensus        96 ~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei  175 (404)
                      +|++|+||||..++..|++.++.+||+|+.++.  +|+   ++++.+.+++++. +.+|+++|.||. .+.|+.++|+||
T Consensus        90 lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~--~~~---~a~~~a~~l~~~~-g~~~v~~f~~~~-~i~G~gTi~~EI  162 (504)
T PRK09224         90 LGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGD--SFD---EAYAHAIELAEEE-GLTFIHPFDDPD-VIAGQGTIAMEI  162 (504)
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHH---HHHHHHHHHHHhc-CCEEeCCCCCcH-HHHhHHHHHHHH
Confidence            999999999999999999999999999999975  454   4567788888875 678889999997 678999999999


Q ss_pred             HHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCC-CCCCCCCCCccccccCCCCccc---cc
Q psy14801        176 LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQS-LNDVPENQISYNEVEGIGYSFA---AT  251 (404)
Q Consensus       176 ~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~---~~  251 (404)
                      ++|+...||++|+|+|+||+++|++.+++...|.+|||+|+|.+++.+.... .+...........+++++...+   ..
T Consensus       163 ~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g~~~~  242 (504)
T PRK09224        163 LQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETF  242 (504)
T ss_pred             HHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCccHHHH
Confidence            9999856999999999999999999999999999999999999986543211 1110001111223344432221   11


Q ss_pred             ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCCC
Q psy14801        252 TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGVR  317 (404)
Q Consensus       252 ~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~~  317 (404)
                      .+...++|..+.|+|.|+.++++.++++++++++|+||.+++|+.++.++. .++.+||+|.||++-
T Consensus       243 ~~~~~~vd~~v~Vsd~ei~~a~~~l~~~~~~~~epagA~~lAal~~~~~~~~~~g~~vv~i~sG~n~  309 (504)
T PRK09224        243 RLCQEYVDDVITVDTDEICAAIKDVFEDTRSIAEPAGALALAGLKKYVAQHGIEGETLVAILSGANM  309 (504)
T ss_pred             HHHHhcCCeEEEECHHHHHHHHHHHHHhcCeEEcHHHHHHHHHHHHhhhhcCCCCCeEEEEECCCCC
Confidence            223567899999999999999999999999999999999999999887653 257899999999864

>PRK05638 threonine synthase; Validated

Probab=100.00  E-value=8.9e-47  Score=375.20  Aligned_cols=296  Identities=21%  Similarity=0.186  Sum_probs=234.2

Q ss_pred             ccCCCCCCCc-------CCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEec
Q psy14801          8 SNSARNSPFT-------PTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEP   80 (404)
Q Consensus         8 ~~~~~~~~~~-------~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~   80 (404)
                      ...||+++++       ++++|+|||++++ ++..+|.+||+|+|++|||||||||++.+++.++++.|.    ++||++
T Consensus        44 ~~~wry~~~lp~~~~~v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~----~~vv~a  118 (442)
T PRK05638         44 PGVWRYKELLPQVKKIISLGEGGTPLIRAR-ISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYAA----NGFIVA  118 (442)
T ss_pred             CChhhhhhhCCCcCCccccCCCCCcEEccc-chHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCC----CEEEEe
Confidence            4678887664       4689999999994 666678899999999999999999999999999998886    789999


Q ss_pred             CCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCC
Q psy14801         81 SSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRN  160 (404)
Q Consensus        81 ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~n  160 (404)
                      |+||+|+|+|++|+.+|++|+||||.+++..|+.+++.+||+|+.+++  +++   ++++.+++++++. +.|+++++.|
T Consensus       119 SsGN~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~--~~~---~~~~~a~~~~~~~-~~~~~~~~~n  192 (442)
T PRK05638        119 SDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGE--SVD---EAIEYAEELARLN-GLYNVTPEYN  192 (442)
T ss_pred             CCChHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECC--CHH---HHHHHHHHHHHhC-CeEecCCCCC
Confidence            999999999999999999999999999999999999999999999985  343   4466788887664 5778888999


Q ss_pred             CCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCC------CcEEEEEcCCCCcccccCCCCCCCCC
Q psy14801        161 PNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCP------SCKLVGADPFGSILAQPQSLNDVPEN  234 (404)
Q Consensus       161 p~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~------~~~vi~V~p~~~~~~~~~~~~~~~~~  234 (404)
                      |. .+.|+.++|+||++|+.  ||++|+|+|+|++++|++.+|+...+      -.|+++|||+++...........  .
T Consensus       193 p~-~~eG~~t~a~Ei~eq~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~~~~~~~~--~  267 (442)
T PRK05638        193 II-GLEGQKTIAFELWEEIN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIASEILGNK--T  267 (442)
T ss_pred             hh-HhhhHHHHHHHHHHHHC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHHHHHhcCC--C
Confidence            98 46789999999999996  99999999999999999999998653      24999999988753321100110  0


Q ss_pred             CCccccccCC--CCccccc---ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh--cCCCCe
Q psy14801        235 QISYNEVEGI--GYSFAAT---TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--LRPDQR  307 (404)
Q Consensus       235 ~~~~~~~~~i--~~~~~~~---~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~--~~~~~~  307 (404)
                      ....+...++  +......   ...+...+.++.++|.++..+.+.++ ++|++++|++|++++|+.++.++  ..++.+
T Consensus       268 ~~~~t~a~gl~~~~p~~~~~~~~~i~~~~g~~~~v~d~~i~~a~~~l~-~eGi~~epssaaa~Aa~~~~~~~g~i~~~~~  346 (442)
T PRK05638        268 KCNETKALGLYVKNPVMKEYVSEAIKESGGTAVVVNEEEIMAGEKLLA-KEGIFAELSSAVVMPALLKLGEEGYIEKGDK  346 (442)
T ss_pred             CCCCceeeeEeeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHH-hcCceecchHHHHHHHHHHHHHcCCCCCCCe
Confidence            0111122222  1111100   00112345677888888887776665 47999999999999999998876  467889


Q ss_pred             EEEEecCCCCCcc
Q psy14801        308 CVVILADGVRNYL  320 (404)
Q Consensus       308 vv~v~~~~~~~~~  320 (404)
                      ||++.||++.+..
T Consensus       347 Vv~i~tG~g~k~~  359 (442)
T PRK05638        347 VVLVVTGSGLKGY  359 (442)
T ss_pred             EEEEeCCCCCCCC
Confidence            9999999987764

>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions

Probab=100.00  E-value=8e-46  Score=342.09  Aligned_cols=243  Identities=39%  Similarity=0.557  Sum_probs=223.5

Q ss_pred             CCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEE
Q psy14801         24 VPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVV  103 (404)
Q Consensus        24 TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv  103 (404)
                      |||++++++++..+.+||+|+|++|||||||||++.+++..+.++|.+ |+.+||++|+||+|.|+|++|+.+|++|++|
T Consensus         1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~-~~~~vv~~ssGN~g~alA~~a~~~g~~~~v~   79 (244)
T cd00640           1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL-PKGVIIESTGGNTGIALAAAAARLGLKCTIV   79 (244)
T ss_pred             CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC-CCCEEEEeCCcHHHHHHHHHHHHcCCCEEEE
Confidence            899999999987788999999999999999999999999999999865 5689999999999999999999999999999


Q ss_pred             ecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHHHhCC-C
Q psy14801        104 MPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGG-K  182 (404)
Q Consensus       104 ~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~q~~~-~  182 (404)
                      +|...+..|+++|+.+|++|+.++.  +++   ++.+.+++++++.++.+|+++|.||. .+.|+.++++||++|+.+ .
T Consensus        80 ~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~---~~~~~a~~~~~~~~~~~~~~~~~n~~-~~~g~~~~~~Ei~~q~~~~~  153 (244)
T cd00640          80 MPEGASPEKVAQMRALGAEVVLVPG--DFD---DAIALAKELAEEDPGAYYVNQFDNPA-NIAGQGTIGLEILEQLGGQK  153 (244)
T ss_pred             ECCCCCHHHHHHHHHCCCEEEEECC--CHH---HHHHHHHHHHHhCCCCEecCCCCCHH-HHHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999986  343   44677888888756788999999997 466778999999999987 5


Q ss_pred             cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccCccccCcEE
Q psy14801        183 VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWG  262 (404)
Q Consensus       183 ~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  262 (404)
                      ||++|+|+|+|++++|++.+++...|..||++|+|                                          .++
T Consensus       154 ~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~------------------------------------------~~~  191 (244)
T cd00640         154 PDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP------------------------------------------EVV  191 (244)
T ss_pred             CCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEee------------------------------------------eEE
Confidence            99999999999999999999999999999999999                                          567


Q ss_pred             ecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14801        263 KCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADG  315 (404)
Q Consensus       263 ~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~  315 (404)
                      .|+|.|++++++++++++|++++|+||.+++++.++.++..++.+||++.||+
T Consensus       192 ~v~d~~~~~a~~~l~~~~gi~~~pssa~~~aa~~~~~~~~~~~~~vv~v~tg~  244 (244)
T cd00640         192 TVSDEEALEAIRLLAREEGILVEPSSAAALAAALKLAKKLGKGKTVVVILTGG  244 (244)
T ss_pred             EECHHHHHHHHHHHHHHcCceECHhHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            89999999999999999999999999999999999888776788999999975

This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy

>TIGR00260 thrC threonine synthase

Probab=100.00  E-value=1.7e-45  Score=354.17  Aligned_cols=289  Identities=21%  Similarity=0.181  Sum_probs=229.6

Q ss_pred             CcCCCCCCCCeeecCCCCCCCCC-eEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801         16 FTPTVPGKVPLLPQSKQGSILLP-TTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA   94 (404)
Q Consensus        16 ~~~~~~g~TPl~~~~~l~~~~g~-~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~   94 (404)
                      .+.+.+|+|||++++++...+|. +||+|+|++|||||||||++.+++.++.++|.    .+||++|+||||+|+|++|+
T Consensus        16 ~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~----~~vv~aSsGN~g~a~A~~a~   91 (328)
T TIGR00260        16 LVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELGN----DTVLCASTGNTGAAAAAYAG   91 (328)
T ss_pred             hhhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcCC----CEEEEeCCcHHHHHHHHHhc
Confidence            45567899999999999888887 99999999999999999999999999998886    68999999999999999999


Q ss_pred             HcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCC--CCChhhHHhhH
Q psy14801         95 IKGYKMVVVMPMK-MSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRN--PNNPLSHYETT  171 (404)
Q Consensus        95 ~~G~~~~iv~p~~-~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~n--p~~si~g~~~~  171 (404)
                      .+|++|+||||.. +++.|+.+++.+||+|+.+++  ++++   +.+.++++.++. ..++ ....|  |.+ +.||.++
T Consensus        92 ~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~--~~~~---~~~~~~~~~~~~-~~~~-~~~~n~~~~~-~~g~~t~  163 (328)
T TIGR00260        92 KAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG--NFDD---AQRLVKQLFGDK-EALG-LNSVNSIPYR-LEGQKTY  163 (328)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--CHHH---HHHHHHHHHhhc-Ceee-cccCCCCCeE-eeeehhH
Confidence            9999999999998 899999999999999999986  4554   355677777754 2333 33455  653 5778899


Q ss_pred             HHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHh-------CCCcEEEEEcCCCCccccc-C-CCCCCCCCCCccccc
Q psy14801        172 AEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEK-------CPSCKLVGADPFGSILAQP-Q-SLNDVPENQISYNEV  241 (404)
Q Consensus       172 a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~-------~~~~~vi~V~p~~~~~~~~-~-~~~~~~~~~~~~~~~  241 (404)
                      ++||++|+.. .||.+|+++|+||+++|++.+++..       .|  ++++|+|.++..... . .-+.........+..
T Consensus       164 ~~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p--~v~~Ve~~~~~~~~~~~~~~g~~~~~~~~~t~~  241 (328)
T TIGR00260       164 AFEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLP--VKRGIQAEGAADIVRAFLESGQWEPIEDPATLS  241 (328)
T ss_pred             HHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCC--ceeEEEcCCCChHHHHHHcCCCcCcCCCCCccC
Confidence            9999999985 7999999999999999999999874       56  999999999832211 0 001000000111222


Q ss_pred             cCCCCcccccc------cCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh--cCCCCeEEEEec
Q psy14801        242 EGIGYSFAATT------LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--LRPDQRCVVILA  313 (404)
Q Consensus       242 ~~i~~~~~~~~------~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~--~~~~~~vv~v~~  313 (404)
                      .++.... |..      +.....+..+.++|.|+.++++++++++|++++|+||.+++++.++.++  ..++.+||++.|
T Consensus       242 ~~l~~~~-p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~~~~~~~~~~~~~vv~i~t  320 (328)
T TIGR00260       242 TAIDIGN-PANWERALELFRRSNGNAEDVSDEEILEAIKLLAREEGYFVEPHSAVSVAALLKLVEKGTADPAERVVCALT  320 (328)
T ss_pred             cceecCC-CCCHHHHHHHHHhcCCcEEecCHHHHHHHHHHHHHhcCeeECchHHHHHHHHHHHHhCCCCCCCCcEEEEec
Confidence            3322111 111      1224567899999999999999999999999999999999999988764  356789999999


Q ss_pred             CCCCCc
Q psy14801        314 DGVRNY  319 (404)
Q Consensus       314 ~~~~~~  319 (404)
                      |++.+.
T Consensus       321 G~~~k~  326 (328)
T TIGR00260       321 GNGLKD  326 (328)
T ss_pred             CCCCCC
Confidence            998765

Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.

>PRK08206 diaminopropionate ammonia-lyase; Provisional

Probab=100.00  E-value=1.7e-45  Score=360.14  Aligned_cols=292  Identities=22%  Similarity=0.211  Sum_probs=228.1

Q ss_pred             CCCCCCCeeecCCCCCCCC-CeEEEEeCCC-CCCCChhhHHHHHHHHHHHH--hCCC-----------------CCCCEE
Q psy14801         19 TVPGKVPLLPQSKQGSILL-PTTDAKCEFM-NPTGSLKDRAAWRMIEDAET--AGVL-----------------KPGYTI   77 (404)
Q Consensus        19 ~~~g~TPl~~~~~l~~~~g-~~l~~K~E~~-~ptGS~K~R~a~~~l~~a~~--~g~~-----------------~~~~~v   77 (404)
                      ...++|||+++++|++.+| .+||+|+|++ |||||||||++.+.+..+..  .+..                 .++.+|
T Consensus        40 ~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v  119 (399)
T PRK08206         40 PGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGEVREKLGDITF  119 (399)
T ss_pred             CCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHHHHhccCCEE
Confidence            3678999999999999888 5999999998 59999999999988877653  2220                 134579


Q ss_pred             EecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeec-
Q psy14801         78 VEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLD-  156 (404)
Q Consensus        78 v~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~-  156 (404)
                      |++|+||||+|+|++|+.+|++|+||||..+++.|+.+|+.+||+|+.++.  +++   +.++.+.+++++. +++|+. 
T Consensus       120 v~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~--~~~---~~~~~a~~~~~~~-g~~~v~~  193 (399)
T PRK08206        120 ATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDG--NYD---DSVRLAAQEAQEN-GWVVVQD  193 (399)
T ss_pred             EEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHH---HHHHHHHHHHHHc-CCEEecC
Confidence            999999999999999999999999999999999999999999999999986  343   4466677877765 456664 


Q ss_pred             ----CCCC-CCChhhHHhhHHHHHHHHhCC---CcCEEEEccCCChhHHHHHHHHHHhC--CCcEEEEEcCCCCcccccC
Q psy14801        157 ----QFRN-PNNPLSHYETTAEEILRDTGG---KVDMIVLGCGTGGTASGIGRKIKEKC--PSCKLVGADPFGSILAQPQ  226 (404)
Q Consensus       157 ----e~~n-p~~si~g~~~~a~ei~~q~~~---~~~~vvv~~gsG~~~~Gi~la~~~~~--~~~~vi~V~p~~~~~~~~~  226 (404)
                          +|.| |.+.+.||.++|+||++|+.+   .||++|+|+|+||+++|++.+++...  +..|+++|||+++..+...
T Consensus       194 ~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs~~l~~s  273 (399)
T PRK08206        194 TAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQADCLYQS  273 (399)
T ss_pred             ccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCCCchHHHH
Confidence                6765 556789999999999999985   59999999999999999999999874  4689999999998653211


Q ss_pred             -CCCCCCCCC-CccccccCCCCcc---cccccCccccCcEEecChHHHHHHHHHHHH----hcCcEeccchhhHHHHHHH
Q psy14801        227 -SLNDVPENQ-ISYNEVEGIGYSF---AATTLDRNVIDQWGKCGDKDTFLMARRLIK----SEGLLVGGSSGTAMHVACQ  297 (404)
Q Consensus       227 -~~~~~~~~~-~~~~~~~~i~~~~---~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~----~~gi~~~~~tg~tlag~~~  297 (404)
                       ..+...... ...+...++....   .+..+.....|.++.|+|.|+.++++++++    ++|+++||++|.+++++.+
T Consensus       274 ~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vepsgAa~lAa~~~  353 (399)
T PRK08206        274 AVDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGESGAVGLGALAA  353 (399)
T ss_pred             HHcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecchHHHHHHHHHH
Confidence             111100000 0123334442221   122223456789999999999999999996    7899999999999999986


Q ss_pred             HHH-----------hcCCCCeEEEEecCCC
Q psy14801        298 AAK-----------SLRPDQRCVVILADGV  316 (404)
Q Consensus       298 ~lk-----------~~~~~~~vv~v~~~~~  316 (404)
                      +..           ...++.+||++.|++.
T Consensus       354 ~~~~~~~~~~~~~~~i~~~~~Vv~iltgG~  383 (399)
T PRK08206        354 LMTDPDYQELREKLGLDEDSRVLLISTEGD  383 (399)
T ss_pred             HHhcchhhHHHHhcCCCCCCEEEEEECCCC
Confidence            541           2346789999999664

>KOG1250|consensus

Probab=100.00  E-value=9.3e-45  Score=334.90  Aligned_cols=288  Identities=22%  Similarity=0.253  Sum_probs=240.9

Q ss_pred             CCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCe
Q psy14801         20 VPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYK   99 (404)
Q Consensus        20 ~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~   99 (404)
                      +.-.|||.+.-.|+...|.++|+|+|++||+||||.||+.+++...-++++.   ..|+++|.||||.|+|++|+++|++
T Consensus        63 ~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~~---~gViasSaGNha~a~Ayaa~~Lgip  139 (457)
T KOG1250|consen   63 VIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQKK---AGVIASSAGNHAQAAAYAARKLGIP  139 (457)
T ss_pred             ceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhhc---CceEEecCccHHHHHHHHHHhcCCc
Confidence            4557999999889999999999999999999999999999999888776642   5799999999999999999999999


Q ss_pred             EEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHHHh
Q psy14801        100 MVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDT  179 (404)
Q Consensus       100 ~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~q~  179 (404)
                      ++||||..+|..|.+.++.+||+|++.+.  +++++   ...|.+++++. +..|+++|++|. .++|+.+++.||++|+
T Consensus       140 aTIVmP~~tp~~kiq~~~nlGA~Vil~G~--~~deA---k~~a~~lAke~-gl~yI~pfDhP~-I~aGqgTig~EIl~ql  212 (457)
T KOG1250|consen  140 ATIVMPVATPLMKIQRCRNLGATVILSGE--DWDEA---KAFAKRLAKEN-GLTYIPPFDHPD-IWAGQGTIGLEILEQL  212 (457)
T ss_pred             eEEEecCCChHHHHHHHhccCCEEEEecc--cHHHH---HHHHHHHHHhc-CceecCCCCCch-hhcCcchHHHHHHHhh
Confidence            99999999999999999999999999875  56554   45588999876 788999999997 7899999999999999


Q ss_pred             CCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCC-CCCCCCccccccCCCCcccccc---cCc
Q psy14801        180 GGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLND-VPENQISYNEVEGIGYSFAATT---LDR  255 (404)
Q Consensus       180 ~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~---~~~  255 (404)
                      ...+++++||+|+||+++||+.+++...|.+++|+|++.++..+...-... .-..+.....+.+++...+..+   +..
T Consensus       213 ~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~  292 (457)
T KOG1250|consen  213 KEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQ  292 (457)
T ss_pred             cCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHH
Confidence            977779999999999999999999999999999999999986543211111 1111222344455544333221   234


Q ss_pred             cccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14801        256 NVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR  317 (404)
Q Consensus       256 ~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~  317 (404)
                      .++|..+.|++.||..++.++.+++..+++|++|.+++++..+.....++.++|.+.++++-
T Consensus       293 ~~~d~vvvV~~~ei~aaI~~l~edek~vvEpAgaaaLaai~~~~~~~lk~~~vv~ilsG~n~  354 (457)
T KOG1250|consen  293 KLVDRVVVVEDDEIAAAILRLFEDEKMVVEPAGAAALAAIYSGKLNHLKGKKVVSILSGGNI  354 (457)
T ss_pred             hcCceEEEeccHHHHHHHHHHHHhhhheeccchHHHHHHHHhccccccCCceEEeecccCCC
Confidence            57789999999999999999999999999999999999999983334577889999988754

>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions

Probab=100.00  E-value=1.1e-43  Score=344.71  Aligned_cols=294  Identities=19%  Similarity=0.212  Sum_probs=222.4

Q ss_pred             CCCCeeecCCCCCCC-CCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEe-cCCChHHHHHHHHHHHcCCe
Q psy14801         22 GKVPLLPQSKQGSIL-LPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVE-PSSGNTGIGLAMVAAIKGYK   99 (404)
Q Consensus        22 g~TPl~~~~~l~~~~-g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~-~ssGN~g~a~A~~a~~~G~~   99 (404)
                      .+|||++++++++.+ +.+||+|+|++|||||||||++..++..+.++|.    ..+|+ +|+||||+|+|++|+.+|++
T Consensus        33 ~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~----~~vv~~~ssGN~g~alA~~a~~~G~~  108 (365)
T cd06446          33 RPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRVIAETGAGQHGVATATACALFGLE  108 (365)
T ss_pred             CCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCC----CeEEEecCchHHHHHHHHHHHHhCCC
Confidence            489999999998877 5799999999999999999999999999988886    45555 79999999999999999999


Q ss_pred             EEEEecCCCC---HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHH-HHHHHhCCC-cEeecCCC--C--CCChhhHHhh
Q psy14801        100 MVVVMPMKMS---KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGA-HRIASQMKN-AVVLDQFR--N--PNNPLSHYET  170 (404)
Q Consensus       100 ~~iv~p~~~~---~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a-~~l~~~~~~-~~~~~e~~--n--p~~si~g~~~  170 (404)
                      |+||||...+   +.|+++|+.+||+|+.++..  ++...+.++.+ +...++.++ .|++.++.  |  +.+.+.|+.+
T Consensus       109 ~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ag~~t  186 (365)
T cd06446         109 CEIYMGAVDVERQPLNVFRMELLGAEVVPVPSG--SGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVRDFQSV  186 (365)
T ss_pred             eEEEEcCCccccccchHHHHHHCCCEEEEeCCC--CCcHHHHHHHHHHHHHhccCCceEecccccCCCCchHHHHHhhhH
Confidence            9999998643   36788999999999999863  22222333333 333333223 33334432  2  3345789999


Q ss_pred             HHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCC----CCC----------
Q psy14801        171 TAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLN----DVP----------  232 (404)
Q Consensus       171 ~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~----~~~----------  232 (404)
                      +|+||++|+.+    .||++|+++|+|++++|++.+++. .+.+|||+|+|.+++.+......    ...          
T Consensus       187 ~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g~~~~~~~~~~~~  265 (365)
T cd06446         187 IGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGGTAGVLHGLKMYT  265 (365)
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCccccccceeeccCCCcceecchhhhc
Confidence            99999999863    599999999999999999998876 46899999999988654321000    000          


Q ss_pred             ------CCCCccccccCCCCc-ccccc--cCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcC
Q psy14801        233 ------ENQISYNEVEGIGYS-FAATT--LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLR  303 (404)
Q Consensus       233 ------~~~~~~~~~~~i~~~-~~~~~--~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~  303 (404)
                            ......+...+++.. ..+..  +.....+.++.|+|.|+.++++++++++|+++||+||++++|+.++.++.+
T Consensus       266 ~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~r~la~~eGi~~epssgaalAa~~~~~~~~~  345 (365)
T cd06446         266 LQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFKLLARTEGIIPALESSHAIAYAIKLAKKLG  345 (365)
T ss_pred             cccccCCCCCcccccccccCCCCCHHHHHHHHhCCceEEEeChHHHHHHHHHHHHhcCceeCccchHHHHHHHHHHHhcC
Confidence                  000111222233211 11111  223456889999999999999999999999999999999999999988776


Q ss_pred             CCCeEEEEecCCCCCcccc
Q psy14801        304 PDQRCVVILADGVRNYLTK  322 (404)
Q Consensus       304 ~~~~vv~v~~~~~~~~~~~  322 (404)
                      ++.+||+|.||.+.+|+++
T Consensus       346 ~~~~Vv~i~~g~G~k~~~~  364 (365)
T cd06446         346 KEKVIVVNLSGRGDKDLQT  364 (365)
T ss_pred             CCCeEEEEeCCCCcccccc
Confidence            6789999999999888754

In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.

>TIGR03844 cysteate_syn cysteate synthase

Probab=100.00  E-value=1.9e-44  Score=351.25  Aligned_cols=302  Identities=19%  Similarity=0.138  Sum_probs=233.2

Q ss_pred             ccCCCCCCCcC-----CCCCCCCeeecCCCCCCCCC-eEEEEeCC-------CCCCCChhhHHHHHHHHHHHHhCCCCCC
Q psy14801          8 SNSARNSPFTP-----TVPGKVPLLPQSKQGSILLP-TTDAKCEF-------MNPTGSLKDRAAWRMIEDAETAGVLKPG   74 (404)
Q Consensus         8 ~~~~~~~~~~~-----~~~g~TPl~~~~~l~~~~g~-~l~~K~E~-------~~ptGS~K~R~a~~~l~~a~~~g~~~~~   74 (404)
                      ...||+++|++     +.+|.|||++.++|++.+|+ +||+|+|.       +|||||||||++.+++..+.+.|.    
T Consensus        42 ~~~wry~~~lP~~~~~~~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~----  117 (398)
T TIGR03844        42 PGIFRYYDWLPVTGHLRTRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGG----  117 (398)
T ss_pred             CchhhhHhhCCCCCCCCCCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCC----
Confidence            46788887776     45678999999999998998 99995555       899999999999999999999885    


Q ss_pred             CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEe
Q psy14801         75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVV  154 (404)
Q Consensus        75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~  154 (404)
                      +.||++|+||||+|+|++|+++|++|+||||.+++..+...++.+|++|+.+++  +|++   +.+.+++++++. +.+.
T Consensus       118 ~~Vv~aSsGN~g~alA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g--~~d~---a~~~a~~~a~~~-g~~~  191 (398)
T TIGR03844       118 KTLVVASAGNTGRAFAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDG--DYTD---AIALADRIATLP-GFVP  191 (398)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCC--CHHH---HHHHHHHHHHhC-Cccc
Confidence            789999999999999999999999999999998654434445789999999986  4554   456688887765 3333


Q ss_pred             ecCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHH---------hCCCcEEEEEcCCCCccccc
Q psy14801        155 LDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKE---------KCPSCKLVGADPFGSILAQP  225 (404)
Q Consensus       155 ~~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~---------~~~~~~vi~V~p~~~~~~~~  225 (404)
                      ...+.||. .+.|+.++++||++|+.+.||++|+|+|+|.++.|++.++..         +.|  |+++|||+++..+..
T Consensus       192 ~~~~~~p~-~ieG~~Ti~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P--~l~~VQ~eg~~p~~~  268 (398)
T TIGR03844       192 EGGARNVA-RRDGMGTVMLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLP--RLHLAQNLPFVPMVN  268 (398)
T ss_pred             cCCCCCHH-HHhhHHHHHHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCC--CEEEEEcCCchHHHH
Confidence            35667886 789999999999999984599999999999878888888877         336  889999999854321


Q ss_pred             C-CCCC---CC--CCCCc-----cccccCCCCccccc-------ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccc
Q psy14801        226 Q-SLND---VP--ENQIS-----YNEVEGIGYSFAAT-------TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGS  287 (404)
Q Consensus       226 ~-~~~~---~~--~~~~~-----~~~~~~i~~~~~~~-------~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~  287 (404)
                      . ..+.   .+  ..+..     .+..+++.....+.       ...+...+..+.|+|.||.++++.+++++|++++|+
T Consensus       269 a~~~g~~~~~~~~~~~~~~~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI~~A~~~l~~~~gi~vEpa  348 (398)
T TIGR03844       269 AWQEGRREIIPESDMPDAENSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVSNKEAVSAGKLFEESEGIDILPA  348 (398)
T ss_pred             HHHcCCCccccccCCccccccccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhCCcccccc
Confidence            1 1111   00  00000     12333332111111       112345678999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHh--cCCCCeEEEEecCCCCCcccc
Q psy14801        288 SGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLTK  322 (404)
Q Consensus       288 tg~tlag~~~~lk~--~~~~~~vv~v~~~~~~~~~~~  322 (404)
                      +|.++||+.++.++  ..++.+||++.||++.+.+..
T Consensus       349 ~A~alAal~k~~~~g~i~~~~~Vv~vlTG~glK~~~~  385 (398)
T TIGR03844       349 AAVAVAALVKAVESGFIGPDDDILLNITGGGYKRLRE  385 (398)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEEECCcchhhHHh
Confidence            99999999998765  457889999999999776553

Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.

>PRK04346 tryptophan synthase subunit beta; Validated

Probab=100.00  E-value=2e-43  Score=341.82  Aligned_cols=299  Identities=21%  Similarity=0.192  Sum_probs=223.1

Q ss_pred             CCCC-CCCeeecCCCCCCC-CCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHc
Q psy14801         19 TVPG-KVPLLPQSKQGSIL-LPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIK   96 (404)
Q Consensus        19 ~~~g-~TPl~~~~~l~~~~-g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~   96 (404)
                      ..+| +|||+++++|++.+ |++||+|+|++|||||||+|++...+..+++.|+.   ..|+++|+||||+|+|++|+++
T Consensus        53 ~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk~---~vIaetgaGnhG~A~A~~aa~~  129 (397)
T PRK04346         53 NYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGKK---RIIAETGAGQHGVATATAAALL  129 (397)
T ss_pred             HhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCCC---eEEEecCcHHHHHHHHHHHHHc
Confidence            4566 59999999999988 57999999999999999999999999999998862   3566689999999999999999


Q ss_pred             CCeEEEEecCC-CC--HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHH-HHHHHhCCCcEee-cCCCCC----CChhhH
Q psy14801         97 GYKMVVVMPMK-MS--KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGA-HRIASQMKNAVVL-DQFRNP----NNPLSH  167 (404)
Q Consensus        97 G~~~~iv~p~~-~~--~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a-~~l~~~~~~~~~~-~e~~np----~~si~g  167 (404)
                      |++|+||||.. .+  ..|+.+|+.+||+|+.|+..  ....++.++.+ +.+.++..+.+|+ ..+.||    .....|
T Consensus       130 Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g--~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~  207 (397)
T PRK04346        130 GLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSG--SRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDF  207 (397)
T ss_pred             CCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCC--CCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHh
Confidence            99999999985 33  35778999999999999851  22233333334 3355543455555 334333    222458


Q ss_pred             HhhHHHHHHHHhC----CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc--------CCCCC-----
Q psy14801        168 YETTAEEILRDTG----GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP--------QSLND-----  230 (404)
Q Consensus       168 ~~~~a~ei~~q~~----~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~--------~~~~~-----  230 (404)
                      +.+++.||.+|+.    +.||++|+++|+|++++|+..+|+. .|.+|+|+|+|.++.....        ...+.     
T Consensus       208 q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g~~  286 (397)
T PRK04346        208 QSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHGAK  286 (397)
T ss_pred             cchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEecCCCccccccccchhhcCCeeeecccc
Confidence            9999999999974    3599999999999999999999965 7889999999998632110        00000     


Q ss_pred             -------CCCCCCccccccCCCCccc-c--cccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHH
Q psy14801        231 -------VPENQISYNEVEGIGYSFA-A--TTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAK  300 (404)
Q Consensus       231 -------~~~~~~~~~~~~~i~~~~~-~--~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk  300 (404)
                             ............++...-+ |  ..+.....+.++.|+|.|++++++++++.+|++.+++|+++++++.++.+
T Consensus       287 ~~~~~~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~~~~~v~VtD~eal~a~~~L~~~eGIi~~~esa~AlA~a~kla~  366 (397)
T PRK04346        287 TYLLQDEDGQILETHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDDEALEAFQLLSRLEGIIPALESSHALAYALKLAP  366 (397)
T ss_pred             ceecccCCCccCCCceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCEeccHHHHHHHHHHHhhh
Confidence                   0000011112222211111 1  11223345688999999999999999999999999999999999999888


Q ss_pred             hcCCCCeEEEEecCCCCCccccc
Q psy14801        301 SLRPDQRCVVILADGVRNYLTKF  323 (404)
Q Consensus       301 ~~~~~~~vv~v~~~~~~~~~~~~  323 (404)
                      ++.++.+||++.||.+.+++...
T Consensus       367 ~l~~~~~Vvv~lsGrG~kd~~~~  389 (397)
T PRK04346        367 TLGKDQIIVVNLSGRGDKDVFTV  389 (397)
T ss_pred             hcCCCCeEEEEeCCCCccCHHHH
Confidence            87788899999999888876543

>PRK13028 tryptophan synthase subunit beta; Provisional

Probab=100.00  E-value=5.3e-43  Score=339.47  Aligned_cols=299  Identities=20%  Similarity=0.162  Sum_probs=224.5

Q ss_pred             CCCC-CCCeeecCCCCCCC-CCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHc
Q psy14801         19 TVPG-KVPLLPQSKQGSIL-LPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIK   96 (404)
Q Consensus        19 ~~~g-~TPl~~~~~l~~~~-g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~   96 (404)
                      ..+| +|||+++++|++.+ +++||+|+|++|||||||+|.+..++..+++.|+.   ..|+++|+||||+|+|++|+.+
T Consensus        57 ~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~~---~vI~etgsGnhG~A~A~aaa~~  133 (402)
T PRK13028         57 HYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGKK---RLIAETGAGQHGVATATAAALF  133 (402)
T ss_pred             HhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCCC---eEEEecCcHHHHHHHHHHHHHc
Confidence            3455 79999999999988 57999999999999999999999999999988861   3566799999999999999999


Q ss_pred             CCeEEEEecCCCCH---HHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHH-HHHhCCCcEeec-CCC--CC--CChhhH
Q psy14801         97 GYKMVVVMPMKMSK---EKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHR-IASQMKNAVVLD-QFR--NP--NNPLSH  167 (404)
Q Consensus        97 G~~~~iv~p~~~~~---~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~-l~~~~~~~~~~~-e~~--np--~~si~g  167 (404)
                      |++|+||||...++   .|+.+|+.+||+|+.++..  ....+++++.+.+ +.++.++.+|+. .+.  +|  .....|
T Consensus       134 Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g--~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~  211 (402)
T PRK13028        134 GLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRG--GRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDF  211 (402)
T ss_pred             CCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCC--CCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHH
Confidence            99999999985433   5678999999999999852  2233444555643 455444566663 322  22  223458


Q ss_pred             HhhHHHHHHHHhC----CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC--------CcccccCCCCC-C---
Q psy14801        168 YETTAEEILRDTG----GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG--------SILAQPQSLND-V---  231 (404)
Q Consensus       168 ~~~~a~ei~~q~~----~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~--------~~~~~~~~~~~-~---  231 (404)
                      +.++++|+.+|+.    ..||++|+++|+|++++|++.+|+. .|.+|+|+|+|.+        +..+.....+. .   
T Consensus       212 q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~~  290 (402)
T PRK13028        212 QSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGFK  290 (402)
T ss_pred             hHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCceEEEEecCCCCcccccccccccCCCcceecccc
Confidence            8999999999873    3599999999999999999999986 4889999999988        32221111110 0   


Q ss_pred             --------CCCCCccccccCCCCccc-ccc--cCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHH
Q psy14801        232 --------PENQISYNEVEGIGYSFA-ATT--LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAK  300 (404)
Q Consensus       232 --------~~~~~~~~~~~~i~~~~~-~~~--~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk  300 (404)
                              ...........++...-+ |..  +.....+.++.|+|.|++++++.+++.+||+++++||.+++++.+..+
T Consensus       291 ~~~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~~~~~v~VtD~eal~a~~~La~~eGIi~~~~sa~alA~a~~~a~  370 (402)
T PRK13028        291 SYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIGRVEYVTATDEEALDAFFLLSRTEGIIPALESSHAVAYAIKLAP  370 (402)
T ss_pred             eeeccccCCCcCCccceeccccCCCCCHHHHHHHHhcCcEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHHhhh
Confidence                    000011122223321111 111  122344689999999999999999999999999999999999999888


Q ss_pred             hcCCCCeEEEEecCCCCCccccc
Q psy14801        301 SLRPDQRCVVILADGVRNYLTKF  323 (404)
Q Consensus       301 ~~~~~~~vv~v~~~~~~~~~~~~  323 (404)
                      ++.++.+||++.||.+.+++...
T Consensus       371 ~l~~~~~VVv~lsG~G~kd~~~~  393 (402)
T PRK13028        371 ELSKDETILVNLSGRGDKDIDYV  393 (402)
T ss_pred             hcCCCCeEEEEECCCCccCHHHH
Confidence            87788999999999988876544

>TIGR00263 trpB tryptophan synthase, beta subunit

Probab=100.00  E-value=3.5e-43  Score=342.66  Aligned_cols=296  Identities=21%  Similarity=0.206  Sum_probs=221.8

Q ss_pred             CCCCeeecCCCCCCCC-CeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeE
Q psy14801         22 GKVPLLPQSKQGSILL-PTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKM  100 (404)
Q Consensus        22 g~TPl~~~~~l~~~~g-~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~  100 (404)
                      .+|||+++++|++.+| ++||+|+|++|||||||||++..++..++++|.   +..|+++|+||||+|+|++|+.+|++|
T Consensus        49 ~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~---~~vi~e~ssGN~G~alA~~a~~~Gl~~  125 (385)
T TIGR00263        49 RPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK---KRIIAETGAGQHGVATATAAALLGLDC  125 (385)
T ss_pred             CCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCC---CEEEEEcCcHHHHHHHHHHHHHcCCCE
Confidence            4899999999988777 799999999999999999999999999988775   134557999999999999999999999


Q ss_pred             EEEecCC-CCH--HHHHHHHHcCCEEEEeCCCCCCCChhhH-HHHHHHHHHhCCCcEee-cCCCCC----CChhhHHhhH
Q psy14801        101 VVVMPMK-MSK--EKVYTMKALGAKIIRTQNDKSYDHPEGM-IAGAHRIASQMKNAVVL-DQFRNP----NNPLSHYETT  171 (404)
Q Consensus       101 ~iv~p~~-~~~--~k~~~l~~~Ga~v~~v~~~~~~~~~~~~-~~~a~~l~~~~~~~~~~-~e~~np----~~si~g~~~~  171 (404)
                      +||||+. .+.  .++++|+.+||+|+.++..  .+...+. .+.++++.++.++.+|+ .++.||    .+...|+.++
T Consensus       126 ~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~--~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~~~t~  203 (385)
T TIGR00263       126 EVYMGAEDVERQKPNVFRMELLGAKVIPVTSG--SGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVI  203 (385)
T ss_pred             EEEecCCcccccchHHHHHHHcCCEEEEECCC--CCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHHhhHH
Confidence            9999985 443  5788999999999999752  2223333 23445555554445555 455543    3345788999


Q ss_pred             HHHHHHHhC----CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc---CCC-CCCC-----------
Q psy14801        172 AEEILRDTG----GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP---QSL-NDVP-----------  232 (404)
Q Consensus       172 a~ei~~q~~----~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~---~~~-~~~~-----------  232 (404)
                      ++||++|+.    ..||++|+++|+|++++|++.++.. .|.+|+|+|+|.++.....   ..+ ...+           
T Consensus       204 g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~  282 (385)
T TIGR00263       204 GEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLHGMKTYLL  282 (385)
T ss_pred             HHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCCcccchhhhhhhhcCCeeEecCcccccc
Confidence            999999973    2489999999999999999998854 6899999999998632110   000 0000           


Q ss_pred             C-----CCCccccccCCCCccc-ccc--cCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCC
Q psy14801        233 E-----NQISYNEVEGIGYSFA-ATT--LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRP  304 (404)
Q Consensus       233 ~-----~~~~~~~~~~i~~~~~-~~~--~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~  304 (404)
                      .     .....+...++..... +..  +.....+.++.|+|.|+.++++++++++|+++++++|++++++.+++++..+
T Consensus       283 ~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~~~~~v~Vsd~e~~~a~~~la~~egi~~~~ssaaalaa~~~~~~~l~~  362 (385)
T TIGR00263       283 QDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGRATYEAITDDEALEAFKLLSRNEGIIPALESSHALAHLEKIAPTLPK  362 (385)
T ss_pred             cCCCCcccccceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCeechHHHHHHHHHHHHHHhCCC
Confidence            0     0001112222221111 111  1223456789999999999999999999999999999999999998888778


Q ss_pred             CCeEEEEecCCCCCccccc
Q psy14801        305 DQRCVVILADGVRNYLTKF  323 (404)
Q Consensus       305 ~~~vv~v~~~~~~~~~~~~  323 (404)
                      +.+||++.||++.++++.+
T Consensus       363 ~~~Vv~i~~g~G~~d~~~~  381 (385)
T TIGR00263       363 DQIVVVNLSGRGDKDIFTI  381 (385)
T ss_pred             CCeEEEEeCCCCcCCHHHH
Confidence            8899999999888876543

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.

>PLN02618 tryptophan synthase, beta chain

Probab=100.00  E-value=3.7e-43  Score=340.48  Aligned_cols=301  Identities=19%  Similarity=0.203  Sum_probs=224.6

Q ss_pred             cCCCCC-CCCeeecCCCCCCC------CCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHH
Q psy14801         17 TPTVPG-KVPLLPQSKQGSIL------LPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGL   89 (404)
Q Consensus        17 ~~~~~g-~TPl~~~~~l~~~~------g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~   89 (404)
                      ++..+| +|||+++++|++.+      |++||+|+|++|||||||+|++...+..+++.|+   +..|+++|+||||+|+
T Consensus        59 l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~---~~vIaesgaGNhG~Al  135 (410)
T PLN02618         59 LKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGK---KRIIAETGAGQHGVAT  135 (410)
T ss_pred             HHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCC---CEEEEEcCcHHHHHHH
Confidence            345676 89999999999866      5799999999999999999999999888888875   1344566799999999


Q ss_pred             HHHHHHcCCeEEEEecCCC---CHHHHHHHHHcCCEEEEeCCCCCCCChhhHH-HHHHHHHHhCCCcEee-cCCCC--C-
Q psy14801         90 AMVAAIKGYKMVVVMPMKM---SKEKVYTMKALGAKIIRTQNDKSYDHPEGMI-AGAHRIASQMKNAVVL-DQFRN--P-  161 (404)
Q Consensus        90 A~~a~~~G~~~~iv~p~~~---~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~-~~a~~l~~~~~~~~~~-~e~~n--p-  161 (404)
                      |++|+++|++|+||||...   +..|+.+|+.+||+|+.++..  ....++++ +.+++++++....+|+ ....|  | 
T Consensus       136 A~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g--~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~  213 (410)
T PLN02618        136 ATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSG--TATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY  213 (410)
T ss_pred             HHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCC--CCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCC
Confidence            9999999999999999853   356677999999999999641  11223333 3345566654455665 33333  3 


Q ss_pred             -CChhhHHhhHHHHHHHHh----CCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccc--------cCCC
Q psy14801        162 -NNPLSHYETTAEEILRDT----GGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQ--------PQSL  228 (404)
Q Consensus       162 -~~si~g~~~~a~ei~~q~----~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~--------~~~~  228 (404)
                       .....++.+++.||.+|+    ...||.+|+++|+|++++||+.+|+. .|.+|+|+|+|.++....        ....
T Consensus       214 ~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~~~~~~~~~a~l~~g~~  292 (410)
T PLN02618        214 PMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGFGLDSGKHAATLTKGEV  292 (410)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCCcccccccccchhcCCc
Confidence             223467889999997776    23599999999999999999999965 688999999999862210        0000


Q ss_pred             C-----------C-CCCCCCccccccCCCCccc---ccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHH
Q psy14801        229 N-----------D-VPENQISYNEVEGIGYSFA---ATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMH  293 (404)
Q Consensus       229 ~-----------~-~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tla  293 (404)
                      +           . ............++...-.   ...+.....+.++.|+|.|+++++++|++.+||+.+++||.+++
T Consensus       293 gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~~~~l~~~~~~~~v~VtD~Eal~a~~~La~~eGIi~~~sSa~a~a  372 (410)
T PLN02618        293 GVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDTGRAEYYSVTDEEALEAFQRLSRLEGIIPALETSHALA  372 (410)
T ss_pred             ceeccccccccccccCCCCCCcchhhhhcCCCCcHHHHHHHhhcCcEEEEECHHHHHHHHHHHHHHcCceEchhHHHHHH
Confidence            0           0 0000011112222211110   12223345678999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCeEEEEecCCCCCccccc
Q psy14801        294 VACQAAKSLRPDQRCVVILADGVRNYLTKF  323 (404)
Q Consensus       294 g~~~~lk~~~~~~~vv~v~~~~~~~~~~~~  323 (404)
                      ++.++++++.++..||++.+|.+.+++...
T Consensus       373 ~a~~~a~~l~~~~~iVv~lsgrG~Kd~~~v  402 (410)
T PLN02618        373 YLEKLCPTLPDGTKVVVNCSGRGDKDVNTA  402 (410)
T ss_pred             HHHHHhHhcCCCCEEEEEeCCCCcCCHHHH
Confidence            999999988888999999999999987755

>KOG1251|consensus

Probab=100.00  E-value=8.8e-44  Score=308.54  Aligned_cols=293  Identities=20%  Similarity=0.265  Sum_probs=238.9

Q ss_pred             cCCCCCCCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHH-HhCCCCCCCEEEecCCChHHH
Q psy14801          9 NSARNSPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAE-TAGVLKPGYTIVEPSSGNTGI   87 (404)
Q Consensus         9 ~~~~~~~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~-~~g~~~~~~~vv~~ssGN~g~   87 (404)
                      .+.|-+||++    .||++..+.|.+..|.+||||+|.+|.|||||.|||.+.+..+. ++..    +.||+.||||||.
T Consensus        15 A~~rik~~ih----kTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~~----kgvithSSGNHaq   86 (323)
T KOG1251|consen   15 AHQRIKPFIH----KTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKRA----KGVITHSSGNHAQ   86 (323)
T ss_pred             HHHHHHhhhc----cCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhhc----CceEeecCCcHHH
Confidence            4456677876    89999999999999999999999999999999999999988876 4433    6799999999999


Q ss_pred             HHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhH
Q psy14801         88 GLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSH  167 (404)
Q Consensus        88 a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g  167 (404)
                      |+|++|+..|++++||||.+.|..|...++.||++|+.++.   +.+  .+.+.++++.++. +.+.+.+|+.|. .+.|
T Consensus        87 AlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~---~~~--sRE~va~~ltee~-g~~~i~Py~~p~-vIaG  159 (323)
T KOG1251|consen   87 ALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEP---TVE--SRESVAKDLTEET-GYYLIHPYNHPS-VIAG  159 (323)
T ss_pred             HHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecC---ccc--hHHHHHHHHHHhc-CcEEeCCCCCcc-eeec
Confidence            99999999999999999999999999999999999999986   332  3456689999887 567779999996 7899


Q ss_pred             HhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCC-CCCCCCCCccccccCCCC
Q psy14801        168 YETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSL-NDVPENQISYNEVEGIGY  246 (404)
Q Consensus       168 ~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~  246 (404)
                      +.++|+|+++|.+ ..|.+|||+|+||+++|++++.+...|+++|++|+|++.....+... +.........++++|...
T Consensus       160 qgTiA~ElleqVg-~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~  238 (323)
T KOG1251|consen  160 QGTIALELLEQVG-EIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRT  238 (323)
T ss_pred             cchHHHHHHHhhC-ccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhhh
Confidence            9999999999998 78999999999999999999999999999999999987643211111 110001112233344322


Q ss_pred             c---ccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14801        247 S---FAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRN  318 (404)
Q Consensus       247 ~---~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~  318 (404)
                      .   ...+.+-+.++|..+.|++.|+.++++.+|++..++++|+.+..++|++..-.++ ...++.+|.+||...
T Consensus       239 ~~lG~~t~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~vEPTa~lgfAavl~~k~~~-~~K~igIiLsGGNVD  312 (323)
T KOG1251|consen  239 SHLGPLTWPIIRDLVDDILTVSEDEIKEALKLIWERMKVVVEPTAALGFAAVLSHKFAL-NIKRIGIILSGGNVD  312 (323)
T ss_pred             ccccccchHHHHHHhhhheeecHHHHHHHHHHHHHHHheeeccchhHHHHHHHhhhHHh-ccCceEEEEeCCccc
Confidence            2   1222334567899999999999999999999999999999999999987654443 367889999988643

>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme

Probab=100.00  E-value=1.9e-42  Score=338.50  Aligned_cols=291  Identities=20%  Similarity=0.206  Sum_probs=216.5

Q ss_pred             CCCCCCCeeecCCCCCCCC--CeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEe-cCCChHHHHHHHHHHH
Q psy14801         19 TVPGKVPLLPQSKQGSILL--PTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVE-PSSGNTGIGLAMVAAI   95 (404)
Q Consensus        19 ~~~g~TPl~~~~~l~~~~g--~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~-~ssGN~g~a~A~~a~~   95 (404)
                      ++.++|||+++++|++.+|  ++||+|+|++|||||||+|++..++.++.++|.    .++|+ +|+||||.|+|++|+.
T Consensus        64 l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~----~~~vtetssGN~G~alA~aaa~  139 (419)
T TIGR01415        64 QIGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGA----KRLVTETGAGQWGSALSLAGAL  139 (419)
T ss_pred             hcCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCC----CeEEEecCchHHHHHHHHHHHH
Confidence            4446899999999998776  699999999999999999999999999999997    45665 6899999999999999


Q ss_pred             cCCeEEEEecCCC---CHHHHHHHHHcCCEEEEeCCCCCCCChhh---------------HHHHHHHHHHhCCC-cEeec
Q psy14801         96 KGYKMVVVMPMKM---SKEKVYTMKALGAKIIRTQNDKSYDHPEG---------------MIAGAHRIASQMKN-AVVLD  156 (404)
Q Consensus        96 ~G~~~~iv~p~~~---~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~---------------~~~~a~~l~~~~~~-~~~~~  156 (404)
                      +|++|+||||...   ++.|+.+|+.+||+|+.++.+  +++..+               .+..+.+++++.++ .|+..
T Consensus       140 ~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~--~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~~y~~~  217 (419)
T TIGR01415       140 FGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSE--FTEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDTKYSLG  217 (419)
T ss_pred             cCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCc--hhhHHHHhhhcccccccchHHHHHHHHHHHHhCCCCEEEeC
Confidence            9999999999843   568899999999999999973  333211               23455566655443 45556


Q ss_pred             CCCCCCChhhHHhhHHHHHHHHhCC---CcCEEEEccCCChhHHHHHHHHHHh----CCCcEEEEEcCCCCcccccCCCC
Q psy14801        157 QFRNPNNPLSHYETTAEEILRDTGG---KVDMIVLGCGTGGTASGIGRKIKEK----CPSCKLVGADPFGSILAQPQSLN  229 (404)
Q Consensus       157 e~~np~~si~g~~~~a~ei~~q~~~---~~~~vvv~~gsG~~~~Gi~la~~~~----~~~~~vi~V~p~~~~~~~~~~~~  229 (404)
                      ++.|+  ...|+.++|+||++|++.   .||++|+++|+|++++|++.+|...    .+.+|+|+|+|.+++.+......
T Consensus       218 ~~~n~--~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~l~~g~~~  295 (419)
T TIGR01415       218 SVLNH--VLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPTLTRGEYR  295 (419)
T ss_pred             CCCcH--HHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChhhhcCccc
Confidence            66664  567999999999999974   4999999999999999999988432    24689999999998654332110


Q ss_pred             -CCCCC--CCccccccCCCCccccc-----------------ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchh
Q psy14801        230 -DVPEN--QISYNEVEGIGYSFAAT-----------------TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSG  289 (404)
Q Consensus       230 -~~~~~--~~~~~~~~~i~~~~~~~-----------------~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg  289 (404)
                       ...+.  ......+.+++..+.+.                 .+........+.|+|.|++++++.+++++|++++|+||
T Consensus       296 yd~~~~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~~~~~~~~~l~~~~~~~~~~V~d~e~~~a~r~la~~eGi~~epssa  375 (419)
T TIGR01415       296 YDFGDTAGLTPLLKMYTLGHDFIPPPIHAGGLRYHGVAPTLSLLVNLGIVEARAYDQEEAFEAAVIFAKTEGIVPAPESA  375 (419)
T ss_pred             ccccccccCCcceeeeecCCCCCCcceeccccccCCccHHHHHHhhcCceEEEEECHHHHHHHHHHHHHhcCCccccHHH
Confidence             00000  00001111222222211                 11122334577899999999999999999999999999


Q ss_pred             hHHHHHHHHHHhcC---CCCeEEEEecCCCC
Q psy14801        290 TAMHVACQAAKSLR---PDQRCVVILADGVR  317 (404)
Q Consensus       290 ~tlag~~~~lk~~~---~~~~vv~v~~~~~~  317 (404)
                      .+++++.+..++..   .+.+|+++++|.+.
T Consensus       376 ~alaaai~~a~~~~~~~~~~vvv~~lsG~G~  406 (419)
T TIGR01415       376 HAIAAAIDEARKCRETGEEKVILFNLSGHGL  406 (419)
T ss_pred             HHHHHHHHHHHhcCcCCCCeEEEEEcCCCCc
Confidence            99999999887643   23356677777544

This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.

>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=100.00  E-value=6.1e-44  Score=340.70  Aligned_cols=283  Identities=32%  Similarity=0.436  Sum_probs=216.9

Q ss_pred             cCCCCCCCCeeecC--CCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801         17 TPTVPGKVPLLPQS--KQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA   94 (404)
Q Consensus        17 ~~~~~g~TPl~~~~--~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~   94 (404)
                      |++++++|||++++  .++...+.+||+|+|++|||||||||++.+++.+++++|.    ++|+++|+||||.|+|++|+
T Consensus         1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~----~~vv~assGN~g~a~A~~a~   76 (306)
T PF00291_consen    1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGG----RTVVGASSGNHGRALAYAAA   76 (306)
T ss_dssp             GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTT----SEEEEESSSHHHHHHHHHHH
T ss_pred             CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcccccc----ceeeeeccCCceehhhhhhh
Confidence            45789999999975  4455667899999999999999999999999999998876    78999999999999999999


Q ss_pred             HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHh-------CCCcEeecCCCCCCChhhH
Q psy14801         95 IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQ-------MKNAVVLDQFRNPNNPLSH  167 (404)
Q Consensus        95 ~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~-------~~~~~~~~e~~np~~si~g  167 (404)
                      .+|++|++|+|.++++.|+++++.+|++|+.++.+  ++   +..+.+.+++++       ....  +++| |+.+.+.|
T Consensus        77 ~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~g  148 (306)
T PF00291_consen   77 RLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPGD--VE---GAFDDAQELAKERAELLSPFNGE--LNQY-NNPNVIAG  148 (306)
T ss_dssp             HHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESST--HH---HHHHHHHHHHHHHHHHHHHSTTE--ESTT-TSHHHHHH
T ss_pred             hccccceeeeccccccccccceeeecceEEEcccc--cc---ccccccccccccccccccccccc--cCcc-cchhhhhh
Confidence            99999999999999999999999999999999862  21   122223333321       1112  5667 55457899


Q ss_pred             HhhHHHHHHHHhCCCcCE--EEEccCCChhHHHHHHHHHH--hCCCcEEEEEcCCCCcccccC-CCCCCCCCCCcccccc
Q psy14801        168 YETTAEEILRDTGGKVDM--IVLGCGTGGTASGIGRKIKE--KCPSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVE  242 (404)
Q Consensus       168 ~~~~a~ei~~q~~~~~~~--vvv~~gsG~~~~Gi~la~~~--~~~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~  242 (404)
                      +.++++||++|+. .||.  +|+|+|+|++++|++.+++.  . |.+|+++|+|.++..+... ..+... .......+.
T Consensus       149 ~~~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~~~-~~~~~~~~~  225 (306)
T PF00291_consen  149 YATIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGKPI-RLPGESTIA  225 (306)
T ss_dssp             HHHHHHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTSCE-HSSCHHSST
T ss_pred             hhhcchhcccccc-cccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCccccccccccccc-cccceeeee
Confidence            9999999999998 7765  99999999999999999999  7 8999999999887543211 001100 000001223


Q ss_pred             CCCCcc-cccc----cCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhc----CCCCeEEEEec
Q psy14801        243 GIGYSF-AATT----LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSL----RPDQRCVVILA  313 (404)
Q Consensus       243 ~i~~~~-~~~~----~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~----~~~~~vv~v~~  313 (404)
                      +++... .+..    +...+.+.++.++|+|+.++++++++++|++++|+++++++++.++.++.    +++.+||+|+|
T Consensus       226 gl~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~~a~a~aa~~~~~~~~~~~~~~~~~vv~v~t  305 (306)
T PF00291_consen  226 GLGVPMPFPGELDLELIDEYVGDVVGVSDEEALEAIRELAEREGILVEPSSAAALAAALKLAERGSLAPPAGKRVVVVLT  305 (306)
T ss_dssp             GGTSSSCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHTGCHTTTTSEEEEEE-
T ss_pred             cccCCccchhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCcEEcHHHHHHHHHHHHHHHhCCccccCCCeEEEEcC
Confidence            443333 1111    12334456789999999999999999999999999999999999988775    47899999998


Q ss_pred             C
Q psy14801        314 D  314 (404)
Q Consensus       314 ~  314 (404)
                      |
T Consensus       306 G  306 (306)
T PF00291_consen  306 G  306 (306)
T ss_dssp             B
T ss_pred             C
Confidence            6

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....

>PRK12391 tryptophan synthase subunit beta; Reviewed

Probab=100.00  E-value=4.2e-42  Score=336.51  Aligned_cols=291  Identities=17%  Similarity=0.164  Sum_probs=218.9

Q ss_pred             CCCCCCeeecCCCCCCCC--CeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEe-cCCChHHHHHHHHHHHc
Q psy14801         20 VPGKVPLLPQSKQGSILL--PTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVE-PSSGNTGIGLAMVAAIK   96 (404)
Q Consensus        20 ~~g~TPl~~~~~l~~~~g--~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~-~ssGN~g~a~A~~a~~~   96 (404)
                      ..++|||+++++|++.+|  ++||+|+|++|||||||+|++..++..+.++|.    ..+++ .|+||||+|+|++|+.+
T Consensus        74 ~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~----~~~vtetgsGN~G~alA~aaa~~  149 (427)
T PRK12391         74 LWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGI----KRLTTETGAGQWGSALALACALF  149 (427)
T ss_pred             ccCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCC----CEEEEccCchHHHHHHHHHHHHc
Confidence            457999999999988776  699999999999999999999999999999997    46665 57999999999999999


Q ss_pred             CCeEEEEecCC---CCHHHHHHHHHcCCEEEEeCCCCCCCChh---------------hHHHHHHHHHHhCCCcEeecCC
Q psy14801         97 GYKMVVVMPMK---MSKEKVYTMKALGAKIIRTQNDKSYDHPE---------------GMIAGAHRIASQMKNAVVLDQF  158 (404)
Q Consensus        97 G~~~~iv~p~~---~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~---------------~~~~~a~~l~~~~~~~~~~~e~  158 (404)
                      |++|+||||..   .++.|+.+|+.+||+|+.++.+  +++..               ..++.+.+++.+.++..|...+
T Consensus       150 Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~--~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~s  227 (427)
T PRK12391        150 GLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSD--LTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALGS  227 (427)
T ss_pred             CCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCc--hhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcCC
Confidence            99999999974   3668899999999999999863  32211               1345566666554455555333


Q ss_pred             CCCCChhhHHhhHHHHHHHHhC---CCcCEEEEccCCChhHHHHHHHHHH-h--C-CCcEEEEEcCCCCcccccCCCC-C
Q psy14801        159 RNPNNPLSHYETTAEEILRDTG---GKVDMIVLGCGTGGTASGIGRKIKE-K--C-PSCKLVGADPFGSILAQPQSLN-D  230 (404)
Q Consensus       159 ~np~~si~g~~~~a~ei~~q~~---~~~~~vvv~~gsG~~~~Gi~la~~~-~--~-~~~~vi~V~p~~~~~~~~~~~~-~  230 (404)
                       |+.+.+.|+.++|+||++|++   ..||.+|+++|+|++++|++.++.. +  . +.+|||+|+|.+++.+...... .
T Consensus       228 -~~~~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~~~  306 (427)
T PRK12391        228 -VLNHVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKGEYAYD  306 (427)
T ss_pred             -CCcHHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhcccccccc
Confidence             233467899999999999997   3699999999999999999997743 2  3 7789999999998765432111 0


Q ss_pred             CCC--CCCccccccCCCCccccccc-----------------CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhH
Q psy14801        231 VPE--NQISYNEVEGIGYSFAATTL-----------------DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTA  291 (404)
Q Consensus       231 ~~~--~~~~~~~~~~i~~~~~~~~~-----------------~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~t  291 (404)
                      ..+  .......+.+++..+++...                 ......+.+.|++.|++++++.+++++|++++|+||.+
T Consensus       307 ~gd~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~g~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss~~a  386 (427)
T PRK12391        307 FGDTAGLTPLLKMYTLGHDFVPPPIHAGGLRYHGMAPLVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVPAPESSHA  386 (427)
T ss_pred             ccccccCCccceeEecCCCCCCccccccccccCCchHHHHHHHhcCceEEEEECHHHHHHHHHHHHHHcCCeechHHHHH
Confidence            000  00000112233333322211                 11222367899999999999999999999999999999


Q ss_pred             HHHHHHHHHhc---CCCCeEEEEecCCCC
Q psy14801        292 MHVACQAAKSL---RPDQRCVVILADGVR  317 (404)
Q Consensus       292 lag~~~~lk~~---~~~~~vv~v~~~~~~  317 (404)
                      ++++.+..++.   .++.+||++++|.+.
T Consensus       387 laaa~~~a~~~~~~~~~~~iv~~lsG~G~  415 (427)
T PRK12391        387 IAAAIDEALKAKEEGEEKVILFNLSGHGL  415 (427)
T ss_pred             HHHHHHHHHhccccCCCCEEEEEeCCCCC
Confidence            99999887652   346788888887544

>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional

Probab=100.00  E-value=2.6e-43  Score=337.82  Aligned_cols=294  Identities=17%  Similarity=0.186  Sum_probs=226.4

Q ss_pred             CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCC--CChhhHHHHHHHHHHHHhCCCCCCCEEE--ecCCChHHHHHH
Q psy14801         15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPT--GSLKDRAAWRMIEDAETAGVLKPGYTIV--EPSSGNTGIGLA   90 (404)
Q Consensus        15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~pt--GS~K~R~a~~~l~~a~~~g~~~~~~~vv--~~ssGN~g~a~A   90 (404)
                      |++++.+++|||+++++++...|++||+|+|++||+  ||||+|++.+++..+.++|.    ++||  ++|+||||+|+|
T Consensus        13 ~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~----~~vv~~~~ssGN~g~alA   88 (329)
T PRK14045         13 PRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGA----DVVITVGAVHSNHAFVTG   88 (329)
T ss_pred             CCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCC----CEEEEeCccHHHHHHHHH
Confidence            788899999999999999887888999999999996  89999999999999999987    6777  589999999999


Q ss_pred             HHHHHcCCeEEEEecCCCCHH-HHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEee-cCCCCCCChhhHH
Q psy14801         91 MVAAIKGYKMVVVMPMKMSKE-KVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVL-DQFRNPNNPLSHY  168 (404)
Q Consensus        91 ~~a~~~G~~~~iv~p~~~~~~-k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~-~e~~np~~si~g~  168 (404)
                      ++|+.+|++|++|||...+.. +..+++.+||+++.++...+++..+.+.+.++++.++.+..++. .++.||.+...++
T Consensus        89 ~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~~~g~~  168 (329)
T PRK14045         89 LAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVGTLGYV  168 (329)
T ss_pred             HHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHH
Confidence            999999999999999865433 66678999999999875333333334455666676655444554 6678898765554


Q ss_pred             hhHHHHHHHHhC---CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCC
Q psy14801        169 ETTAEEILRDTG---GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIG  245 (404)
Q Consensus       169 ~~~a~ei~~q~~---~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~  245 (404)
                      ..++ ||++|+.   .++|.+|+++|||+|++|++.+++...|.+|||+|+|.+........+..   .........+++
T Consensus       169 ~~~~-EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~~~~~~~~~~~~---~~~~~~~~~g~~  244 (329)
T PRK14045        169 RAVG-EIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGSFGEKMKEKVKN---LVKKTKELLGVK  244 (329)
T ss_pred             HHHH-HHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHH---HHHHHHHHhCCC
Confidence            5555 9999986   36999999999999999999999999999999999997632111110000   000011122332


Q ss_pred             Ccc-cccccCccccCcEEecChHHHHHHHHHHHHhcCcEecc-chhhHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14801        246 YSF-AATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGG-SSGTAMHVACQAAKSLRPDQRCVVILADGVRN  318 (404)
Q Consensus       246 ~~~-~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~-~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~  318 (404)
                      ... .+..++... +.|..++ +|++++++++++++|+++|| +||.+++++.+++++...+.+||+++|||...
T Consensus       245 ~~~~~~~~~d~~~-~~y~~~~-~e~~~~~~~la~~eGi~ldpvytgk~~~a~~~~~~~~~~~~~iv~ihtGG~~g  317 (329)
T PRK14045        245 VKVQEPELYDYSF-GEYGKIT-KEVAKLIRSVGTMEGLILDPVYTGKAFYGLMDLAKKGELGEKILFIHTGGISG  317 (329)
T ss_pred             CCccceEeccccc-CCCCCCC-HHHHHHHHHHHHhhCCCCccchHHHHHHHHHHHHHcCCCCCCEEEEECCCccc
Confidence            222 232333333 6777776 79999999999999999998 99999999999998865477999999998654

>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional

Probab=100.00  E-value=6.3e-43  Score=336.74  Aligned_cols=293  Identities=21%  Similarity=0.193  Sum_probs=226.6

Q ss_pred             CCCcCCCCCCCCeeecCCCCCCCC--CeEEEEeCCCCCC---CChhhHHHHHHHHHHHHhCCCCCCCEEEec--CCChHH
Q psy14801         14 SPFTPTVPGKVPLLPQSKQGSILL--PTTDAKCEFMNPT---GSLKDRAAWRMIEDAETAGVLKPGYTIVEP--SSGNTG   86 (404)
Q Consensus        14 ~~~~~~~~g~TPl~~~~~l~~~~g--~~l~~K~E~~~pt---GS~K~R~a~~~l~~a~~~g~~~~~~~vv~~--ssGN~g   86 (404)
                      .|.+++.+|+|||++++++++..|  .+||+|+|++||+   ||+|||.+..++.+++++|.    .+|+++  |+||||
T Consensus         6 ~~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~----~~vvs~G~s~GN~g   81 (337)
T PRK12390          6 FPRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGA----DTLVSIGGVQSNHT   81 (337)
T ss_pred             CCccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCC----CEEEEeCCCccHHH
Confidence            356788999999999999887777  6999999999997   77899999999999999998    788887  889999


Q ss_pred             HHHHHHHHHcCCeEEEEecCCCC--------HHHHHHHHHcCCEEEEeCCCCCCC-ChhhHHHHHHHHHHhCCCcEe-ec
Q psy14801         87 IGLAMVAAIKGYKMVVVMPMKMS--------KEKVYTMKALGAKIIRTQNDKSYD-HPEGMIAGAHRIASQMKNAVV-LD  156 (404)
Q Consensus        87 ~a~A~~a~~~G~~~~iv~p~~~~--------~~k~~~l~~~Ga~v~~v~~~~~~~-~~~~~~~~a~~l~~~~~~~~~-~~  156 (404)
                      +|+|++|+++|++|+||+|..++        ..|+.+++.+||+|+.++.  +++ ...+.++.+.++.++..+..| ..
T Consensus        82 ~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (337)
T PRK12390         82 RQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPD--GFDIGIRKSWEDALEDVRAAGGKPYAIP  159 (337)
T ss_pred             HHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCC--CcchhHHHHHHHHHHHHHhCCCceEEeC
Confidence            99999999999999999876544        2367799999999999986  232 223444455555555333333 33


Q ss_pred             CCCC--CCChhhHHhhHHHHHHHHh---CCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCC
Q psy14801        157 QFRN--PNNPLSHYETTAEEILRDT---GGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDV  231 (404)
Q Consensus       157 e~~n--p~~si~g~~~~a~ei~~q~---~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~  231 (404)
                      ++.+  |. ...|+.++|+||++|.   ..+||++|+++|+|+|++|++.+++...|.+|||+|+|.++.......... 
T Consensus       160 ~~~~~~~~-~~~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~~~~~-  237 (337)
T PRK12390        160 AGASDHPL-GGLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTRAQVLR-  237 (337)
T ss_pred             CcCCCCCc-ccHHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHH-
Confidence            3322  22 2357888999999984   346999999999999999999999999999999999999875432211100 


Q ss_pred             CCCCCcccccc--CCCCccccc--ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccc-hhhHHHHHHHHHHh--cCC
Q psy14801        232 PENQISYNEVE--GIGYSFAAT--TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGS-SGTAMHVACQAAKS--LRP  304 (404)
Q Consensus       232 ~~~~~~~~~~~--~i~~~~~~~--~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~-tg~tlag~~~~lk~--~~~  304 (404)
                          ...+.+.  +++....+.  .+...+.+..+.++|+|+.++++++++++|++++|+ ||.+++++.++.++  ..+
T Consensus       238 ----~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~la~~~gi~~ep~ysg~~~aa~~~~~~~g~~~~  313 (337)
T PRK12390        238 ----IARNTAELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRLCARLEGMLTDPVYEGKSMHGMIDLVRKGEFPE  313 (337)
T ss_pred             ----HHHHHHHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCCCC
Confidence                0011111  222212122  234556789999999999999999999999999996 99999999998875  567


Q ss_pred             CCeEEEEecCCCCC
Q psy14801        305 DQRCVVILADGVRN  318 (404)
Q Consensus       305 ~~~vv~v~~~~~~~  318 (404)
                      +.+||+++|||...
T Consensus       314 ~~~vv~~htgg~~~  327 (337)
T PRK12390        314 GSKVLYAHLGGVPA  327 (337)
T ss_pred             CCeEEEEeCCChHh
Confidence            88999999998543

>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia

Probab=100.00  E-value=3e-43  Score=335.09  Aligned_cols=281  Identities=18%  Similarity=0.157  Sum_probs=219.4

Q ss_pred             CCeeecCCCCCCC--CCeEEEEeCCCCCC---CChhhHHHHHHHHHHHHhCCCCCCCEEEec--CCChHHHHHHHHHHHc
Q psy14801         24 VPLLPQSKQGSIL--LPTTDAKCEFMNPT---GSLKDRAAWRMIEDAETAGVLKPGYTIVEP--SSGNTGIGLAMVAAIK   96 (404)
Q Consensus        24 TPl~~~~~l~~~~--g~~l~~K~E~~~pt---GS~K~R~a~~~l~~a~~~g~~~~~~~vv~~--ssGN~g~a~A~~a~~~   96 (404)
                      |||+++++|++.+  +.+||+|+|++||+   ||||||++.+++..++++|.    ++||++  |+||||+|+|++|+.+
T Consensus         1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~----~~vv~~ggs~GN~g~alA~~a~~~   76 (307)
T cd06449           1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGA----DTLVTVGGIQSNHTRQVAAVAAKL   76 (307)
T ss_pred             CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCC----CEEEECCCchhHHHHHHHHHHHHc
Confidence            8999999998876  57999999999999   56699999999999999987    789998  6899999999999999


Q ss_pred             CCeEEEEecCCCC--------HHHHHHHHHcCCEEEEeCCCCCCCChhhHH-HHHHHHHHhCCCcEee-cCCC-CCCChh
Q psy14801         97 GYKMVVVMPMKMS--------KEKVYTMKALGAKIIRTQNDKSYDHPEGMI-AGAHRIASQMKNAVVL-DQFR-NPNNPL  165 (404)
Q Consensus        97 G~~~~iv~p~~~~--------~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~-~~a~~l~~~~~~~~~~-~e~~-np~~si  165 (404)
                      |++|+||||.+.+        ..|+++++.+||+|+.++.+. ........ +.++++.++.+..++. +++. ||.+ +
T Consensus        77 G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  154 (307)
T cd06449          77 GLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGF-DIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLG-G  154 (307)
T ss_pred             CCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcc-hhhHHHHHHHHHHHHHHcCCceEEecCCCCCCccc-H
Confidence            9999999999876        468999999999999998631 11112222 2333444433333443 5554 8975 5


Q ss_pred             hHHhhHHHHHHHHhCC---CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCcccccc
Q psy14801        166 SHYETTAEEILRDTGG---KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVE  242 (404)
Q Consensus       166 ~g~~~~a~ei~~q~~~---~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~  242 (404)
                      .|+.++++||++|+..   .||++|+++|+|+|++|++.+++...|..|||+|+|.++...........    .. ..+.
T Consensus       155 ~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~----~~-~~~~  229 (307)
T cd06449         155 LGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKAQVLRI----AQ-AKLA  229 (307)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHHHHHHHHH----HH-HHHH
Confidence            6889999999999874   59999999999999999999999999999999999998754321110000    00 0111


Q ss_pred             --CCCCcccccccCccccCcEEecChHHHHHHHHHHHHhcCcEecc-chhhHHHHHHHHHHh--cCCCCeEEEEecCC
Q psy14801        243 --GIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGG-SSGTAMHVACQAAKS--LRPDQRCVVILADG  315 (404)
Q Consensus       243 --~i~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~-~tg~tlag~~~~lk~--~~~~~~vv~v~~~~  315 (404)
                        +.+....+..++..+.+..+.++|+|+.++++++++++|++++| +||.+++++.+++++  ..++.+||+++|||
T Consensus       230 ~~g~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~~Gi~~ep~ytg~~~aa~~~~~~~~~~~~~~~vv~i~TGG  307 (307)
T cd06449         230 EEGLEVKEEDVVLDDDYAAPEYGIPNDETIEAIKLCARLEGIITDPVYEGKSMQGMIDLVRNGEFKEGSKVLFIHLGG  307 (307)
T ss_pred             HcCCCCCcccEEEecCcccCCCCCCCHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHhcCCCCCCCeEEEEeCCC
Confidence              11111223334556678889999999999999999999999999 699999999998886  35678999999986

>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family

Probab=100.00  E-value=7.1e-43  Score=333.41  Aligned_cols=289  Identities=16%  Similarity=0.131  Sum_probs=219.1

Q ss_pred             CCCCCCCeeecCCCCCCCCCeEEEEeCCCCCC--CChhhHHHHHHHHHHHHhCCCCCCCEEEec--CCChHHHHHHHHHH
Q psy14801         19 TVPGKVPLLPQSKQGSILLPTTDAKCEFMNPT--GSLKDRAAWRMIEDAETAGVLKPGYTIVEP--SSGNTGIGLAMVAA   94 (404)
Q Consensus        19 ~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~pt--GS~K~R~a~~~l~~a~~~g~~~~~~~vv~~--ssGN~g~a~A~~a~   94 (404)
                      +...+|||+++++|+...|.+||+|+|++|||  ||||||++.+++..++++|.    ++||++  |+||||+|+|++|+
T Consensus         3 ~~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~----~~vv~~g~ssGN~g~alA~~a~   78 (311)
T TIGR01275         3 LIPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGA----DTVITVGAIQSNHARATALAAK   78 (311)
T ss_pred             CCCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCC----CEEEEcCCchhHHHHHHHHHHH
Confidence            45578999999999888888999999999998  99999999999999999987    789998  56999999999999


Q ss_pred             HcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCCCCCCCChhhH-HHHHHHHHHhCC-CcEeecCCCCCCChhhHHhhH
Q psy14801         95 IKGYKMVVVMPMKM-SKEKVYTMKALGAKIIRTQNDKSYDHPEGM-IAGAHRIASQMK-NAVVLDQFRNPNNPLSHYETT  171 (404)
Q Consensus        95 ~~G~~~~iv~p~~~-~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~-~~~a~~l~~~~~-~~~~~~e~~np~~si~g~~~~  171 (404)
                      .+|++++||||... +..+..+++.+||+|+.++.. ++++..+. .+.++++.++.+ ..++..++.||.+.. |+.++
T Consensus        79 ~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-g~~~~  156 (311)
T TIGR01275        79 KLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAE-EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLGTL-GYVEA  156 (311)
T ss_pred             HhCCceEEEecCCccCCCCHHHHHHcCCEEEEECch-hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHHHH-HHHHH
Confidence            99999999999965 456677789999999999852 34433222 122233333322 234457888997654 45569


Q ss_pred             HHHHHHHhCC--CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCc-c
Q psy14801        172 AEEILRDTGG--KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYS-F  248 (404)
Q Consensus       172 a~ei~~q~~~--~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~  248 (404)
                      |+||++|+..  .||.+|+++|+|+|++|++.+++...|.++||+|+|..+..........     .......+++.. .
T Consensus       157 ~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~~~~~~~~~~-----~~~~~~~g~~~~~~  231 (311)
T TIGR01275       157 VLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFGEDMTDKFVN-----LVKEIAEGLEVKAS  231 (311)
T ss_pred             HHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHH-----HHHHHHHHhCCCCC
Confidence            9999999964  6999999999999999999999999999999999987652111100000     001112222221 1


Q ss_pred             cccccCccccCcEEecChHHHHHHHHHHHHhcCcEecc-chhhHHHHHHHHHHhcC-CCCeEEEEecCCCCC
Q psy14801        249 AATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGG-SSGTAMHVACQAAKSLR-PDQRCVVILADGVRN  318 (404)
Q Consensus       249 ~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~-~tg~tlag~~~~lk~~~-~~~~vv~v~~~~~~~  318 (404)
                      ..........+..+.++|+|+.++++++++++|+++|| +||.+++++.+++++.. ++.+||+++||+...
T Consensus       232 ~~~~~~~~~~~~~~~v~d~e~~~~~~~la~~~gi~vep~~sg~~~aa~~~~~~~~~~~~~~vv~i~tGG~~g  303 (311)
T TIGR01275       232 EVIPELDDYSGPGYGKPTSEVAEIVKKVASREGIILDPVYTGKAFYGLIDLIRKGELGEKGILFIHTGGISG  303 (311)
T ss_pred             CCEEEECCcccCcCCCCCHHHHHHHHHHHHHhCCccCcchHHHHHHHHHHHHHhCCCCCCCEEEEECCCccc
Confidence            11111233456678999999999999999999999999 59999999999886542 466899999998543

This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).

>PRK03910 D-cysteine desulfhydrase; Validated

Probab=100.00  E-value=7.6e-43  Score=335.36  Aligned_cols=290  Identities=19%  Similarity=0.205  Sum_probs=228.0

Q ss_pred             CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCC--CChhhHHHHHHHHHHHHhCCCCCCCEEEecC--CChHHHHHH
Q psy14801         15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPT--GSLKDRAAWRMIEDAETAGVLKPGYTIVEPS--SGNTGIGLA   90 (404)
Q Consensus        15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~pt--GS~K~R~a~~~l~~a~~~g~~~~~~~vv~~s--sGN~g~a~A   90 (404)
                      +.+.+.+++|||++++.|++..|.+||+|+|++||+  ||||||++.+++..++++|.    ++||++|  +||||.|+|
T Consensus         7 ~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~----~~vvt~g~s~gN~g~alA   82 (331)
T PRK03910          7 PRLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGA----DTLITAGAIQSNHARQTA   82 (331)
T ss_pred             CCccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCC----CEEEEcCcchhHHHHHHH
Confidence            446788999999999999887888999999999996  69999999999999998887    7888875  489999999


Q ss_pred             HHHHHcCCeEEEEecCCCCH--------HHHHHHHHcCCEEEEeCCCCCCCCh-hhHHHHHHHHHHhCCCcE-eecCCCC
Q psy14801         91 MVAAIKGYKMVVVMPMKMSK--------EKVYTMKALGAKIIRTQNDKSYDHP-EGMIAGAHRIASQMKNAV-VLDQFRN  160 (404)
Q Consensus        91 ~~a~~~G~~~~iv~p~~~~~--------~k~~~l~~~Ga~v~~v~~~~~~~~~-~~~~~~a~~l~~~~~~~~-~~~e~~n  160 (404)
                      ++|+.+|++|+||||...+.        .|+..++.+||+|+.++.+   ++. ......++++.++.+..+ +..++.|
T Consensus        83 ~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~---~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~  159 (331)
T PRK03910         83 AAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAG---TDMDAQLEELAEELRAQGRRPYVIPVGGSN  159 (331)
T ss_pred             HHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCcc---chHHHHHHHHHHHHHHcCCceEEECCCCCC
Confidence            99999999999999998775        4568999999999999863   222 223345666666543334 3467888


Q ss_pred             CCChhhHHhhHHHHHHHHhCC---CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCc
Q psy14801        161 PNNPLSHYETTAEEILRDTGG---KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQIS  237 (404)
Q Consensus       161 p~~si~g~~~~a~ei~~q~~~---~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~  237 (404)
                      |.+ ..|+.++++||++|+..   .||.+|+|+|+|+|++|++.+++...|++++|+|+|.++..........     ..
T Consensus       160 ~~~-~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~-----~~  233 (331)
T PRK03910        160 ALG-ALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQEPKVAK-----LA  233 (331)
T ss_pred             chh-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHH-----HH
Confidence            875 46778999999999973   5999999999999999999999999999999999999875432110000     00


Q ss_pred             cccccCCCCc----ccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccc-hhhHHHHHHHHHHhc--CCCCeEEE
Q psy14801        238 YNEVEGIGYS----FAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGS-SGTAMHVACQAAKSL--RPDQRCVV  310 (404)
Q Consensus       238 ~~~~~~i~~~----~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~-tg~tlag~~~~lk~~--~~~~~vv~  310 (404)
                      .....+++..    .....+...+.+..+.++|.|++++++++++++|+++||+ ||.+++++.+++++.  .++.+||+
T Consensus       234 ~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~ep~ysg~~~aa~~~~~~~~~~~~~~~Vv~  313 (331)
T PRK03910        234 QATAELLGLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLARTEGILLDPVYTGKAMAGLIDLIRQGRFKKGGNVLF  313 (331)
T ss_pred             HHHHHHcCCCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHcCCCCCCCeEEE
Confidence            0111111111    1111234456778899999999999999999999999996 999999999987653  45779999


Q ss_pred             EecCCCC
Q psy14801        311 ILADGVR  317 (404)
Q Consensus       311 v~~~~~~  317 (404)
                      |+||+..
T Consensus       314 i~tGG~~  320 (331)
T PRK03910        314 IHTGGAP  320 (331)
T ss_pred             EECCChH
Confidence            9998854

>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

Probab=100.00  E-value=5.4e-42  Score=349.49  Aligned_cols=302  Identities=20%  Similarity=0.193  Sum_probs=227.2

Q ss_pred             cCCCCC-CCCeeecCCCCCC----CC--CeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHH
Q psy14801         17 TPTVPG-KVPLLPQSKQGSI----LL--PTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGL   89 (404)
Q Consensus        17 ~~~~~g-~TPl~~~~~l~~~----~g--~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~   89 (404)
                      ++..+| +|||+++++|++.    +|  ++||+|+|++|||||||||++..++..+++.|+.   .+|+++|+||||+|+
T Consensus       319 ~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~~---~~IvetssGNhG~Al  395 (695)
T PRK13802        319 NQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGKT---RVIAETGAGQHGVAT  395 (695)
T ss_pred             HHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCCC---CEEEEECcHHHHHHH
Confidence            345678 9999999998753    44  7999999999999999999999999999999873   578899999999999


Q ss_pred             HHHHHHcCCeEEEEecCC---CCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHH-HHHHHhCCCc-EeecCCCCC---
Q psy14801         90 AMVAAIKGYKMVVVMPMK---MSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGA-HRIASQMKNA-VVLDQFRNP---  161 (404)
Q Consensus        90 A~~a~~~G~~~~iv~p~~---~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a-~~l~~~~~~~-~~~~e~~np---  161 (404)
                      |++|+++|++|+||||..   .+..|+.+|+.|||+|+.++...  ...+++++.+ +++.++.++. |++.++.||   
T Consensus       396 A~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~--~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~  473 (695)
T PRK13802        396 ATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGD--RILKDAINEALRDWVTNVKDTHYLLGTVAGPHPF  473 (695)
T ss_pred             HHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCC--CcHHHHHHHHHHHHHHhcCCceEeecccCCCCCc
Confidence            999999999999999985   46789999999999999998421  1222333333 5566554434 556788765   


Q ss_pred             -CChhhHHhhHHHHHHHHhCC-----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCC-------C
Q psy14801        162 -NNPLSHYETTAEEILRDTGG-----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQS-------L  228 (404)
Q Consensus       162 -~~si~g~~~~a~ei~~q~~~-----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~-------~  228 (404)
                       .+...|+.++|+||++|+.+     .||++|+++|+|++++|++.+|+. .|.+|+|+|+|.++.......       .
T Consensus       474 p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~g~~~g~h~~~~~~g~  552 (695)
T PRK13802        474 PAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGNGPESGKHAIRFAPGT  552 (695)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCCCccccchhhhhhhcc
Confidence             23457999999999999953     599999999999999999999965 688999999999863221100       0


Q ss_pred             CC----------CCCC-----CCccccccCCCCccccccc-CccccC--cEEecChHHHHHHHHHHHHhcCcEeccchhh
Q psy14801        229 ND----------VPEN-----QISYNEVEGIGYSFAATTL-DRNVID--QWGKCGDKDTFLMARRLIKSEGLLVGGSSGT  290 (404)
Q Consensus       229 ~~----------~~~~-----~~~~~~~~~i~~~~~~~~~-~~~~~~--~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~  290 (404)
                      +.          .+..     ........|+...-+...+ .....+  ++..++|.|++++.+.+++.+||+++++||.
T Consensus       553 g~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp~~~~l~~~~rv~~~~vtD~eal~a~~~La~~EGIipa~eS~h  632 (695)
T PRK13802        553 GELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGPEHAWLKDIGRVNYSWATDEEAMNAFKDLCETEGIIPAIESSH  632 (695)
T ss_pred             CCccccccceeecccCCCCCccCccccccccCCCCCCchhHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCccccchHHH
Confidence            00          0000     0001111121111000000 001123  4589999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCC----CCeEEEEecCCCCCcccccc
Q psy14801        291 AMHVACQAAKSLRP----DQRCVVILADGVRNYLTKFI  324 (404)
Q Consensus       291 tlag~~~~lk~~~~----~~~vv~v~~~~~~~~~~~~~  324 (404)
                      +++++.+++++..+    +..||++.||.+.+|+++..
T Consensus       633 Ava~a~~~a~~~~~~~~~~~~Vv~~lsg~GdKdl~~~~  670 (695)
T PRK13802        633 AVAGAYKAAADLKAKGYEHPVMIVNISGRGDKDMNTAG  670 (695)
T ss_pred             HHHHHHHHHHhcccccCCCCEEEEEECCCCcCCHHHHH
Confidence            99999999987653    55899999999999988753

>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family

Probab=100.00  E-value=4.5e-42  Score=332.53  Aligned_cols=288  Identities=20%  Similarity=0.192  Sum_probs=223.6

Q ss_pred             CCCeeecCCCCCCCCC-eEEEEeCCCCC-CCChhhHHHHHHHHHHHHh----------------CCCCC---CCEEEecC
Q psy14801         23 KVPLLPQSKQGSILLP-TTDAKCEFMNP-TGSLKDRAAWRMIEDAETA----------------GVLKP---GYTIVEPS   81 (404)
Q Consensus        23 ~TPl~~~~~l~~~~g~-~l~~K~E~~~p-tGS~K~R~a~~~l~~a~~~----------------g~~~~---~~~vv~~s   81 (404)
                      +|||+++++|++.+|. +||+|+|++|+ |||||+|++.+.+..+.++                +.+++   ..+||++|
T Consensus        22 ~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~aS  101 (376)
T TIGR01747        22 PTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEKMGQATFATAT  101 (376)
T ss_pred             CCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhhcCCCEEEEEC
Confidence            7999999999999994 99999999985 8999999999988877552                12111   36899999


Q ss_pred             CChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeec-----
Q psy14801         82 SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLD-----  156 (404)
Q Consensus        82 sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~-----  156 (404)
                      +||||+|+|++|+.+|++|+||||.++++.|+.+|+.+||+|+.+++  +|++   ..+.+++++++. ++++++     
T Consensus       102 sGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~--~~~~---a~~~a~~~~~~~-g~~~~~~~~~~  175 (376)
T TIGR01747       102 DGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDM--NYDD---TVRLAMQMAQQH-GWVVVQDTAWE  175 (376)
T ss_pred             ccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHH---HHHHHHHHHHhc-CcEEecccccc
Confidence            99999999999999999999999999999999999999999999986  4543   456677777765 456665     


Q ss_pred             CCCC--CCChhhHHhhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCC-C-cEEEEEcCCCCcccccCCC
Q psy14801        157 QFRN--PNNPLSHYETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCP-S-CKLVGADPFGSILAQPQSL  228 (404)
Q Consensus       157 e~~n--p~~si~g~~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~-~-~~vi~V~p~~~~~~~~~~~  228 (404)
                      +|.|  |. .+.||.++++||++|+..    .||++|+|+|+|++++|++.+++...+ . .++++|+|+++..+.....
T Consensus       176 ~~~~~~~~-ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga~~~~~s~~  254 (376)
T TIGR01747       176 GYEKIPTW-IMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKADCLYQSAV  254 (376)
T ss_pred             ccccCCch-HHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCHHHHHHH
Confidence            4655  42 478999999999999963    699999999999999999999976643 3 5999999999865432210


Q ss_pred             ---CCCCCCC-CccccccCCCCccc---ccccCccccCcEEecChHHHHHHHHHHHHhc----CcEeccchhhHHHHHHH
Q psy14801        229 ---NDVPENQ-ISYNEVEGIGYSFA---ATTLDRNVIDQWGKCGDKDTFLMARRLIKSE----GLLVGGSSGTAMHVACQ  297 (404)
Q Consensus       229 ---~~~~~~~-~~~~~~~~i~~~~~---~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~----gi~~~~~tg~tlag~~~  297 (404)
                         +.....+ ...+.+.++.....   ...+.+...+.++.|+|.|+.++++.+++..    +++++|+++.+++++..
T Consensus       255 ~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~~~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~epaga~~la~l~~  334 (376)
T TIGR01747       255 KKDGDIVNVGGDMATIMAGLACGEPNPISWEILRNCTSQFISAQDSVAAKGMRVLGAPYGGDPRIISGESGAVGLGLLAA  334 (376)
T ss_pred             hcCCCeEEcCCCccccccccccCCcchHHHHHHHhcCCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeCchHHHHHHHHH
Confidence               1111111 11244555543221   2223345678899999999999999999854    59999999999998884


Q ss_pred             HHH---------h--cCCCCeEEEEecCCCC
Q psy14801        298 AAK---------S--LRPDQRCVVILADGVR  317 (404)
Q Consensus       298 ~lk---------~--~~~~~~vv~v~~~~~~  317 (404)
                      .+.         +  ..++.+||++.|+|..
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~vvvi~t~gn~  365 (376)
T TIGR01747       335 VMYHPQYQSLMEKLQLDKDAVVLVISTEGDT  365 (376)
T ss_pred             HHhCchHHHHHHHcCCCCCCEEEEEeCCCCC
Confidence            332         1  4457899999998864

This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).

>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase

Probab=100.00  E-value=3.6e-42  Score=331.28  Aligned_cols=293  Identities=22%  Similarity=0.192  Sum_probs=226.1

Q ss_pred             CCCcCCCCCCCCeeecCCCCCCCCC--eEEEEeCCCCCC---CChhhHHHHHHHHHHHHhCCCCCCCEEEec--CCChHH
Q psy14801         14 SPFTPTVPGKVPLLPQSKQGSILLP--TTDAKCEFMNPT---GSLKDRAAWRMIEDAETAGVLKPGYTIVEP--SSGNTG   86 (404)
Q Consensus        14 ~~~~~~~~g~TPl~~~~~l~~~~g~--~l~~K~E~~~pt---GS~K~R~a~~~l~~a~~~g~~~~~~~vv~~--ssGN~g   86 (404)
                      .|++++.+|+|||++++++++.+|.  +||+|+|++||+   ||||||.+..++..++++|.    .+|+++  |+||||
T Consensus         5 ~~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~----~~vvs~ggs~gN~g   80 (337)
T TIGR01274         5 FPRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGC----TTLVSIGGIQSNQT   80 (337)
T ss_pred             CCccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCC----CEEEECCCCcchHH
Confidence            4678899999999999999987764  999999999986   77799999999999999998    788877  779999


Q ss_pred             HHHHHHHHHcCCeEEEEecCCCC--------HHHHHHHHHcCCEEEEeCCCCCCC-ChhhHHHHHHHHHHhC-CCcEeec
Q psy14801         87 IGLAMVAAIKGYKMVVVMPMKMS--------KEKVYTMKALGAKIIRTQNDKSYD-HPEGMIAGAHRIASQM-KNAVVLD  156 (404)
Q Consensus        87 ~a~A~~a~~~G~~~~iv~p~~~~--------~~k~~~l~~~Ga~v~~v~~~~~~~-~~~~~~~~a~~l~~~~-~~~~~~~  156 (404)
                      +|+|++|+.+|++|+||||+..+        ..|+.+++.+||+|+.++..  ++ +..+.+..+.+..++. +..+++.
T Consensus        81 ~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~--~~~~~~~~~~~a~~~~~~~~~~~~~i~  158 (337)
T TIGR01274        81 RQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDG--FDIGHRNSWERALEEVRGAGGKPYPIP  158 (337)
T ss_pred             HHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCc--ccccchHHHHHHHHHHHhcCCceEEeC
Confidence            99999999999999999998542        58999999999999999863  32 1222333344444433 3335554


Q ss_pred             CCC--CCCChhhHHhhHHHHHHHHhC---CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCC
Q psy14801        157 QFR--NPNNPLSHYETTAEEILRDTG---GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDV  231 (404)
Q Consensus       157 e~~--np~~si~g~~~~a~ei~~q~~---~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~  231 (404)
                      ++.  ||. ...|+.++++||++|+.   ..||.+|+|+|+|+|++|++++++...|..|||+|+|.++.......... 
T Consensus       159 ~~~~~~~~-~~~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~~~~-  236 (337)
T TIGR01274       159 AGCSDHPL-GGLGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQTRAQILR-  236 (337)
T ss_pred             CCCCCCcc-chhHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHH-
Confidence            442  343 24578889999999963   36999999999999999999999999999999999999985432111000 


Q ss_pred             CCCCCccccccCCC--Ccccc--cccCccccCcEEecChHHHHHHHHHHHHhcCcEeccc-hhhHHHHHHHHHHh--cCC
Q psy14801        232 PENQISYNEVEGIG--YSFAA--TTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGS-SGTAMHVACQAAKS--LRP  304 (404)
Q Consensus       232 ~~~~~~~~~~~~i~--~~~~~--~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~-tg~tlag~~~~lk~--~~~  304 (404)
                          ...+.+++++  ....+  ..+...+.+..+.++|+|+.++++.+++++|++++|. ||++++|+.+++++  ..+
T Consensus       237 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGi~~ep~ytg~~~aa~~~~~~~g~~~~  312 (337)
T TIGR01274       237 ----IARNTAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRLCAKMEGVLTDPVYEGKSMHGMIEMIRRGEFKE  312 (337)
T ss_pred             ----HHHHHHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHhcCCCCC
Confidence                0011111111  11111  1234445678899999999999999999999999996 99999999999886  567


Q ss_pred             CCeEEEEecCCCCC
Q psy14801        305 DQRCVVILADGVRN  318 (404)
Q Consensus       305 ~~~vv~v~~~~~~~  318 (404)
                      +.+||++++||...
T Consensus       313 ~~~vv~~htGG~~~  326 (337)
T TIGR01274       313 GSNVLYAHLGGAPA  326 (337)
T ss_pred             CCEEEEEeCCChhh
Confidence            88999999997544

This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.

>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase

Probab=100.00  E-value=5.1e-42  Score=334.34  Aligned_cols=290  Identities=19%  Similarity=0.154  Sum_probs=219.9

Q ss_pred             CCCCeeecCCCCCCCC-CeEEEEeCCCCC-CCChhhHHHHHHHHHHHH--hCCC-----------------CCCCEEEec
Q psy14801         22 GKVPLLPQSKQGSILL-PTTDAKCEFMNP-TGSLKDRAAWRMIEDAET--AGVL-----------------KPGYTIVEP   80 (404)
Q Consensus        22 g~TPl~~~~~l~~~~g-~~l~~K~E~~~p-tGS~K~R~a~~~l~~a~~--~g~~-----------------~~~~~vv~~   80 (404)
                      -+|||++++.|++.+| .+||+|+|++|+ |||||+||+.+.+..+.+  .|..                 ....+||++
T Consensus        40 ~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~vv~a  119 (396)
T TIGR03528        40 QPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITFVTA  119 (396)
T ss_pred             cCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEEEEE
Confidence            5799999999999899 599999999985 999999999999887532  2210                 012389999


Q ss_pred             CCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeec----
Q psy14801         81 SSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLD----  156 (404)
Q Consensus        81 ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~----  156 (404)
                      |+||||+|+|++|+.+|++|+||||.++++.|+++|+.+||+|+.++.  +++   ++.+.+++++++. ++++++    
T Consensus       120 SsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~--~~~---~a~~~a~~~a~~~-g~~~v~~~~~  193 (396)
T TIGR03528       120 TDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDL--NYD---DAVRLAWKMAQEN-GWVMVQDTAW  193 (396)
T ss_pred             CccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECC--CHH---HHHHHHHHHHHhc-CcEeeccccc
Confidence            999999999999999999999999999999999999999999999985  343   4466788888765 556664    


Q ss_pred             -CCCCC-CChhhHHhhHHHHHHHHhC----CCcCEEEEccCCChhHHHHHHHHHHhC-CCc-EEEEEcCCCCcccccCCC
Q psy14801        157 -QFRNP-NNPLSHYETTAEEILRDTG----GKVDMIVLGCGTGGTASGIGRKIKEKC-PSC-KLVGADPFGSILAQPQSL  228 (404)
Q Consensus       157 -e~~np-~~si~g~~~~a~ei~~q~~----~~~~~vvv~~gsG~~~~Gi~la~~~~~-~~~-~vi~V~p~~~~~~~~~~~  228 (404)
                       +|.|. ...+.||.++++||++|+.    ..||++|+|+|+|++++|++.+++... +.. ||++|+|+++..+.....
T Consensus       194 ~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l~~s~~  273 (396)
T TIGR03528       194 EGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCLYRSAI  273 (396)
T ss_pred             cccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchHHHHHH
Confidence             56552 2246899999999999997    269999999999999999999885543 333 899999998865432110


Q ss_pred             ---CCCCCCC-CccccccCCCCcc---cccccCccccCcEEecChHHHHHHHHHHHH----hcCcEeccchhhHHHHHHH
Q psy14801        229 ---NDVPENQ-ISYNEVEGIGYSF---AATTLDRNVIDQWGKCGDKDTFLMARRLIK----SEGLLVGGSSGTAMHVACQ  297 (404)
Q Consensus       229 ---~~~~~~~-~~~~~~~~i~~~~---~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~----~~gi~~~~~tg~tlag~~~  297 (404)
                         +...... ...+..+++....   .+..+.+...|.++.|+|+|+.++++.+++    +++++++|+++.+++++..
T Consensus       274 ~~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~epsga~~~Aalaa  353 (396)
T TIGR03528       274 ADDGKPHFVTGDMATIMAGLACGEPNTIGWEILRDYASQFISCPDWVAAKGMRILGNPLKGDPRVISGESGAVGTGLLAA  353 (396)
T ss_pred             hcCCCEEEeCCCccceecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHhcccCCCCceeecCcHHHHHHHHHH
Confidence               1100011 1123444443211   122223456799999999999999999988    5689999999999977654


Q ss_pred             HHHh-----------cCCCCeEEEEecCCCC
Q psy14801        298 AAKS-----------LRPDQRCVVILADGVR  317 (404)
Q Consensus       298 ~lk~-----------~~~~~~vv~v~~~~~~  317 (404)
                      .+..           ..++.+|++|.|++..
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~vv~i~tggn~  384 (396)
T TIGR03528       354 VMTNPDYKELREKLQLDKNSRVLLISTEGDT  384 (396)
T ss_pred             HHhCchhHHHHHhcCCCCCCEEEEEECCCCC
Confidence            4421           2357899999999854

Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.

>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional

Probab=100.00  E-value=1.7e-40  Score=339.90  Aligned_cols=299  Identities=20%  Similarity=0.176  Sum_probs=222.3

Q ss_pred             CCCC-CCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcC
Q psy14801         19 TVPG-KVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKG   97 (404)
Q Consensus        19 ~~~g-~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G   97 (404)
                      ...| +|||+++++|++.+|++||+|+|++|||||||+|++...+..+++.|+   +..|+++|+||||+|+|++|+++|
T Consensus       266 ~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~---~~vi~e~gsGnhG~A~A~~aa~~G  342 (610)
T PRK13803        266 NYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGK---TRIIAETGAGQHGVATATACALFG  342 (610)
T ss_pred             HhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCC---CEEEEecChHHHHHHHHHHHHHcC
Confidence            3455 799999999998888999999999999999999999999998988875   134557999999999999999999


Q ss_pred             CeEEEEecCCC---CHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHH-HHHHHHhCCCcEeecCC-C--CC--CChhhHH
Q psy14801         98 YKMVVVMPMKM---SKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAG-AHRIASQMKNAVVLDQF-R--NP--NNPLSHY  168 (404)
Q Consensus        98 ~~~~iv~p~~~---~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~-a~~l~~~~~~~~~~~e~-~--np--~~si~g~  168 (404)
                      ++|+||||...   +..|+.+|+.+||+|+.++..  .+...+.++. ++++..+.++.+|+.++ .  +|  .+...|+
T Consensus       343 l~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~--~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~  420 (610)
T PRK13803        343 LKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSG--SKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQ  420 (610)
T ss_pred             CcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCC--CCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHh
Confidence            99999999864   356888999999999999852  2233333333 34443444456676433 2  33  2223478


Q ss_pred             hhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccc--------ccCCCCC-C----
Q psy14801        169 ETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILA--------QPQSLND-V----  231 (404)
Q Consensus       169 ~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~--------~~~~~~~-~----  231 (404)
                      .++++||.+|+..    .||.+|+++|+|++++|++.+|+. .|.+|+|+|+|.++...        .....+. .    
T Consensus       421 ~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~~~  499 (610)
T PRK13803        421 SVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGSMT  499 (610)
T ss_pred             hHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeecccee
Confidence            9999999999852    599999999999999999999964 78899999999886321        1100000 0    


Q ss_pred             -------CCCCCccccccCCCCccc-cc--ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh
Q psy14801        232 -------PENQISYNEVEGIGYSFA-AT--TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS  301 (404)
Q Consensus       232 -------~~~~~~~~~~~~i~~~~~-~~--~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~  301 (404)
                             .......+...++...-+ +.  .+.....+.++.|+|.|++++++.+++.+|++++++||.+++++.++.++
T Consensus       500 ~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~~~La~~eGi~~~~ssa~alA~~~~~~~~  579 (610)
T PRK13803        500 YLMQDENGQILEPHSISAGLDYPGIGPMHANLFETGRAIYTSVTDEEALDAFKLLAKLEGIIPALESSHALAYLKEGRKK  579 (610)
T ss_pred             eeecccCCcccCCceeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHHhchh
Confidence                   000011122222221111 11  11122334789999999999999999999999999999999999998777


Q ss_pred             cCCCCeEEEEecCCCCCccccc
Q psy14801        302 LRPDQRCVVILADGVRNYLTKF  323 (404)
Q Consensus       302 ~~~~~~vv~v~~~~~~~~~~~~  323 (404)
                      +.++.+||++.||.+.+++...
T Consensus       580 ~~~~~~Vvv~lsG~G~kd~~~~  601 (610)
T PRK13803        580 FKKKDIVIVNLSGRGDKDIPTL  601 (610)
T ss_pred             cCCCCeEEEEeCCCCcCCHHHH
Confidence            7778899999999988876644

>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=5.4e-39  Score=309.27  Aligned_cols=293  Identities=25%  Similarity=0.246  Sum_probs=229.8

Q ss_pred             CCCCCCCCeeecCCCCCCCCC---eEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801         18 PTVPGKVPLLPQSKQGSILLP---TTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA   94 (404)
Q Consensus        18 ~~~~g~TPl~~~~~l~~~~g~---~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~   94 (404)
                      .+.+|.||+++.+++...++.   ++|+|.|++|||||||||++..++..+.+.|.    .+|+++||||+|.|+|++++
T Consensus        71 ~l~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~----~~I~~ASSGnTgAs~aaya~  146 (411)
T COG0498          71 SLGEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA----KTILCASSGNTGASAAAYAA  146 (411)
T ss_pred             hhhhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC----CEEEEeCCchHHHHHHHHhc
Confidence            467899999999988887774   59999999999999999999999999999985    68999999999999999999


Q ss_pred             HcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHH
Q psy14801         95 IKGYKMVVVMPMK-MSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAE  173 (404)
Q Consensus        95 ~~G~~~~iv~p~~-~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~  173 (404)
                      +.|++|.|++|.+ ++..|+.+|..+|++++.+.+  +||++++   .+++++++.+ .++.....||. .+.|+.++++
T Consensus       147 rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G--~fDda~~---~vk~~~~~~~-~~~~~nsiNp~-rlegq~t~~f  219 (411)
T COG0498         147 RAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDG--NFDDAQE---LVKEAANREG-LLSAVNSINPY-RLEGQKTYAF  219 (411)
T ss_pred             cCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcC--cHHHHHH---HHHHHHhhCC-ceeeccccCHH-HhhhhhhhHh
Confidence            9999999999997 999999999999999999987  6876644   4677776553 37777778886 6789999999


Q ss_pred             HHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCc------EEEEEcCCCCcccccCCCCCCCCCCCccccccCCCC
Q psy14801        174 EILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSC------KLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGY  246 (404)
Q Consensus       174 ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~------~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  246 (404)
                      |+.+|+.+ .||.++||+|+||+++|++.+++...|--      ++.+|++++............ ....+......++.
T Consensus       220 e~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~~~-~~~~T~a~am~I~~  298 (411)
T COG0498         220 EIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKEGR-ETPETIAPAMDIGN  298 (411)
T ss_pred             HHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhhhccccc-ccccccccccccCC
Confidence            99999994 69999999999999999999999865532      445555555432211111100 01111111112222


Q ss_pred             ccccccc---CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh-cCCCCeEEEEecCCCCCcccc
Q psy14801        247 SFAATTL---DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS-LRPDQRCVVILADGVRNYLTK  322 (404)
Q Consensus       247 ~~~~~~~---~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~-~~~~~~vv~v~~~~~~~~~~~  322 (404)
                      +.....+   .+...+-...|+|+|+.++.+++++.+|++++|+|+.+++++.++.++ .+++.++|++.|+++.|+.+.
T Consensus       299 p~n~~r~l~a~~es~g~~~~vsdeEi~~a~~~l~~~eG~~~eP~sA~ava~l~k~~~~~i~~~~~vV~v~Tg~~~K~~~~  378 (411)
T COG0498         299 PSNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKLREKIIDPDETVVLVLTGHGLKFPDT  378 (411)
T ss_pred             CCCHHHHHHHHHhcCCceEEeCHHHHHHHHHHHHHhCCcccCccHHHHHHHHHHHHHhhcCCCCeEEEEecCCcccChhH
Confidence            2111111   011124578899999999999999999999999999999999988765 457789999999999988665

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=7.6e-38  Score=287.12  Aligned_cols=227  Identities=19%  Similarity=0.219  Sum_probs=170.7

Q ss_pred             CcEee-cCCCCCCChhhHHhhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc
Q psy14801        151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP  225 (404)
Q Consensus       151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~  225 (404)
                      ..+|+ .|++||++|+|  ||+|+.|+++++.    +|+.+|||++|||  |||++|+.++.+|||+++|+|+.++....
T Consensus        26 ~~i~~KlE~~NP~gSvK--DR~A~~mI~~Ae~~G~l~pG~tIVE~TSGN--TGI~LA~vaa~~Gy~~iivmP~~~S~er~  101 (300)
T COG0031          26 VEIYAKLESFNPGGSVK--DRIALYMIEDAEKRGLLKPGGTIVEATSGN--TGIALAMVAAAKGYRLIIVMPETMSQERR  101 (300)
T ss_pred             ceEEEEhhhcCCCCchh--HHHHHHHHHHHHHcCCCCCCCEEEEcCCCh--HHHHHHHHHHHcCCcEEEEeCCCCCHHHH
Confidence            45777 89999999999  9999999999984    3899999999999  99999999999999999999998865433


Q ss_pred             CCCCCCCCCCCccccccC-C----C--CcccccccC-ccccCcEEecChHHHH--HHHHHHHHhcC-----cEeccchhh
Q psy14801        226 QSLNDVPENQISYNEVEG-I----G--YSFAATTLD-RNVIDQWGKCGDKDTF--LMARRLIKSEG-----LLVGGSSGT  290 (404)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~-i----~--~~~~~~~~~-~~~~~~~~~v~d~e~~--~~~~~l~~~~g-----i~~~~~tg~  290 (404)
                      ..+....+........++ +    .  ..+.....+ ..+.+||.|..|++++  .++++||++.+     ||+|+||||
T Consensus       102 ~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI~~~~~g~~d~fVagvGTGG  181 (300)
T COG0031         102 KLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQQTDGKVDAFVAGVGTGG  181 (300)
T ss_pred             HHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHHHHHhCCCCCEEEEeCCcch
Confidence            222222211111000111 0    0  001111112 3355688888888885  46788887765     999999999


Q ss_pred             HHHHHHHHHHhcCCCCeEEEEecCCCC-------CccccccchhH--------HhhcCccCcHHHHHH------------
Q psy14801        291 AMHVACQAAKSLRPDQRCVVILADGVR-------NYLTKFISDEW--------MIEKGFLDEAEELEE------------  343 (404)
Q Consensus       291 tlag~~~~lk~~~~~~~vv~v~~~~~~-------~~~~~~~~~~~--------~~~~~~~~~~~~~~~------------  343 (404)
                      |++|+.+++|+.+|+.++++|+|.++.       ++..++++.++        +.|+.+.++|++++.            
T Consensus       182 TitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La~~eGil  261 (300)
T COG0031         182 TITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKIEGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREEGLL  261 (300)
T ss_pred             hHHHHHHHHHhhCCCcEEEEECCCCCcccCCCCCCcccCCCCCCcCCcccccccCceEEEECHHHHHHHHHHHHHHhCee
Confidence            999999999999999999999997632       22334444332        345556677777665            


Q ss_pred             -hccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhc
Q psy14801        344 -MIHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK  381 (404)
Q Consensus       344 -g~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~  381 (404)
                       |+|||+|++||+++|++++++++||||+||+|+||||+
T Consensus       262 vG~SsGA~~~aa~~~a~~~~~g~~IVti~pD~G~RYls~  300 (300)
T COG0031         262 VGISSGAALAAALKLAKELPAGKTIVTILPDSGERYLSK  300 (300)
T ss_pred             ecccHHHHHHHHHHHHHhcCCCCeEEEEECCCcccccCC
Confidence             56999999999999999999999999999999999983

>KOG1252|consensus

Probab=100.00  E-value=2e-34  Score=262.56  Aligned_cols=236  Identities=17%  Similarity=0.227  Sum_probs=164.0

Q ss_pred             Eee-cCCCCCCChhhHHhhHHHHHHHHhCCC----cC-EEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC
Q psy14801        153 VVL-DQFRNPNNPLSHYETTAEEILRDTGGK----VD-MIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ  226 (404)
Q Consensus       153 ~~~-~e~~np~~si~g~~~~a~ei~~q~~~~----~~-~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~  226 (404)
                      +++ +||.||.+|+|  ||+|+.|+++++.+    |+ .++++.+|||  +||++|+.++.+|||+|+|+|+.+......
T Consensus        69 i~~K~E~~~p~~SvK--dRia~sMi~~Ae~~G~i~pg~stliEpTSGN--tGigLA~~~a~~Gyk~i~tmP~~ms~Ek~~  144 (362)
T KOG1252|consen   69 IAAKLEYMNPGGSVK--DRIAWSMIEDAEKKGLITPGKSTLIEPTSGN--TGIGLAYMAALRGYKCIITMPEKMSKEKRI  144 (362)
T ss_pred             EEEEeeecCCcccHH--HHHHHHHHHHHHHcCCccCCceEEEecCCCc--hHHHHHHHHHHcCceEEEEechhhhHHHHH
Confidence            444 89999999999  99999999999853    77 8999999999  999999999999999999999998543221


Q ss_pred             CCCCCCCCCCccccccCC---------CCcccccccCccccCcEEecChHHHH--HHHHHHHHhcC-----cEeccchhh
Q psy14801        227 SLNDVPENQISYNEVEGI---------GYSFAATTLDRNVIDQWGKCGDKDTF--LMARRLIKSEG-----LLVGGSSGT  290 (404)
Q Consensus       227 ~~~~~~~~~~~~~~~~~i---------~~~~~~~~~~~~~~~~~~~v~d~e~~--~~~~~l~~~~g-----i~~~~~tg~  290 (404)
                      .+..............++         +..+.....+....+||.|..|++++  .+++|||+|..     ||.+.||||
T Consensus       145 ~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~ttg~EI~~q~~g~vDi~V~gaGTGG  224 (362)
T KOG1252|consen  145 LLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYETTGPEIWRQLDGKVDIFVAGAGTGG  224 (362)
T ss_pred             HHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccccccHHHHHHhcCCCCEEEeccCCCc
Confidence            111111111111111111         00111111233344555555555552  34555555543     888999999


Q ss_pred             HHHHHHHHHHhcCCCCeEEEEecCCC--------CC-----------ccccccchhHHhhcCccCcHHHHHH--------
Q psy14801        291 AMHVACQAAKSLRPDQRCVVILADGV--------RN-----------YLTKFISDEWMIEKGFLDEAEELEE--------  343 (404)
Q Consensus       291 tlag~~~~lk~~~~~~~vv~v~~~~~--------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~--------  343 (404)
                      |+.|+.|++|+++|+.+||.|+|-.+        .+           |.+..+++..+ |+.+.+.+++++.        
T Consensus       225 TitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld~~~v-d~~~~~~~d~A~~~Ar~La~e  303 (362)
T KOG1252|consen  225 TITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLDTKLV-DEVLKVSSDEAIEMARRLALE  303 (362)
T ss_pred             eeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCCCccceeccccCcCccccchHHH-HHHHHhCCHHHHHHHHHHHHh
Confidence            99999999999999999999999542        22           34444443333 2333344444433        


Q ss_pred             -----hccchhHHHHHHHHHHhcCC-CCeEEEEEcCCCcchhhccCCHHHHHHcCC
Q psy14801        344 -----MIHSGTAMHVACQAAKSLRP-DQRCVVILADGVRNYLTKFISDEWMIEKGF  393 (404)
Q Consensus       344 -----g~SsGa~~~~a~~~~~~~~~-~~~iv~i~~D~g~rYl~~~~~~~w~~~~~~  393 (404)
                           |+|||+|++||+++|++.+. ++.||+++||+|+||++|+++|+|++++..
T Consensus       304 eGll~G~SSGan~~aAl~~a~~~en~~kliV~~~pd~ge~Y~st~L~d~w~~e~~~  359 (362)
T KOG1252|consen  304 EGLLVGISSGANVAAALKLAKRPENAGKLIVVTFPDFGERYLSTFLFDEWREEAEK  359 (362)
T ss_pred             hCeeecccchHHHHHHHHHHhccccCCcEEEEECCCcchhhhhhhhHHHHHHHHhh
Confidence                 67999999999999998654 566666669999999999999999988764

>PRK09225 threonine synthase; Validated

Probab=99.97  E-value=3.2e-30  Score=254.24  Aligned_cols=282  Identities=17%  Similarity=0.127  Sum_probs=202.6

Q ss_pred             CCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHH---HHHHHHHhCCCCCCCEEEecCCChHHHHH-HHHHHHcCC
Q psy14801         23 KVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWR---MIEDAETAGVLKPGYTIVEPSSGNTGIGL-AMVAAIKGY   98 (404)
Q Consensus        23 ~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~---~l~~a~~~g~~~~~~~vv~~ssGN~g~a~-A~~a~~~G~   98 (404)
                      .+||.++..       ++|+...+++||||||||++..   ++..+.+ +.   ..+|+++||||+|.|+ +.++.+.|+
T Consensus        88 ~~pl~~l~~-------~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~---~~~Il~ATSGdtG~Aa~aaf~~~~gi  156 (462)
T PRK09225         88 IAPLVQLDD-------NLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE---KITILGATSGDTGSAAAEAFRGKPNV  156 (462)
T ss_pred             ccceEEeCC-------CceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC---CcEEEEcCCCcHHHHHHHHHhCcCCC
Confidence            588888753       5899999999999999999988   7888877 42   1789999999999888 799999999


Q ss_pred             eEEEEecCC-CCHHHHHHHHHc-CCEEEEeCCCCCCCChhhHHHHHHHHHHhC----CCcEeecCCCCCCChhhHHhhHH
Q psy14801         99 KMVVVMPMK-MSKEKVYTMKAL-GAKIIRTQNDKSYDHPEGMIAGAHRIASQM----KNAVVLDQFRNPNNPLSHYETTA  172 (404)
Q Consensus        99 ~~~iv~p~~-~~~~k~~~l~~~-Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~----~~~~~~~e~~np~~si~g~~~~a  172 (404)
                      +|+|++|.+ +|..++.+|..+ |++|+.+..+++||+++..++.   +..+.    ...++.....||. -+.++.+.+
T Consensus       157 ~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G~fDD~q~~vk~---~~~d~~~~~~~~l~saNSiN~~-Ri~gQ~~yy  232 (462)
T PRK09225        157 RVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEGNFDDCQALVKA---AFNDEELKEKLKLSSANSINIG-RLLAQIVYY  232 (462)
T ss_pred             EEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCCCHHHHHHHHHH---HhhchhhhhcCceEEEeccCHH-HHHHHHHHH
Confidence            999999995 999999999999 9987444444578887665443   33221    1224444445775 678899999


Q ss_pred             HHHHHHhCC---CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccC--CCCc
Q psy14801        173 EEILRDTGG---KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEG--IGYS  247 (404)
Q Consensus       173 ~ei~~q~~~---~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~  247 (404)
                      +|+.+|+.+   .|+.++||+|+||+++|+.+|.+.-.|--|+|+++..+.+.......+.........+..+.  ++.+
T Consensus       233 fea~~ql~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~n~n~~l~~~~~~G~y~~~~~~~T~s~amdI~~p  312 (462)
T PRK09225        233 FYAYLQLGIEAGEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVATNENDVLTRFLKTGVYDPRPTVATLSPAMDISVS  312 (462)
T ss_pred             HHHHHHhccccCCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEEEecCChHHHHHHHcCCCccCCCCCCcCchhhcCCC
Confidence            999999975   38999999999999999999966655644899988555432111111111000011111111  2111


Q ss_pred             ccccc------------c----Cc--cccC---------------cEEecChHHHHHHHHHHHHhcCcEeccchhhHHHH
Q psy14801        248 FAATT------------L----DR--NVID---------------QWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHV  294 (404)
Q Consensus       248 ~~~~~------------~----~~--~~~~---------------~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag  294 (404)
                      ....+            .    ..  ..-.               ..+.++|.|+.++++++++++|++++|+|+.++++
T Consensus       313 sn~eR~l~~~~~~~~~~v~~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~~~~~~~G~~~dPhtAva~aa  392 (462)
T PRK09225        313 SNFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFSAGSVSDEETLATIREVYEEYGYLIDPHTAVAYKA  392 (462)
T ss_pred             CcHHHHHHHhcCCcHHHHHHHHHHHHHcCCcccCHHHHHHhhhcceEEEECHHHHHHHHHHHHHhCCEEECchHHHHHHH
Confidence            11111            0    00  0000               34679999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCeEEEEecCCCCCcccc
Q psy14801        295 ACQAAKSLRPDQRCVVILADGVRNYLTK  322 (404)
Q Consensus       295 ~~~~lk~~~~~~~vv~v~~~~~~~~~~~  322 (404)
                      +.++   ..++.++|++.|+++.|+...
T Consensus       393 ~~~~---~~~~~~~V~l~Ta~p~Kf~~~  417 (462)
T PRK09225        393 AREY---LDPGEPGVVLSTAHPAKFPEV  417 (462)
T ss_pred             HHHh---hCCCCCEEEEecCCccCCHHH
Confidence            9776   346678999999999887443

>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis

Probab=99.97  E-value=3.7e-30  Score=253.96  Aligned_cols=281  Identities=17%  Similarity=0.106  Sum_probs=203.6

Q ss_pred             CCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHH---HHHHHHh--CCCCCCCEEEecCCChHHHH-HHHHHHHc
Q psy14801         23 KVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRM---IEDAETA--GVLKPGYTIVEPSSGNTGIG-LAMVAAIK   96 (404)
Q Consensus        23 ~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~---l~~a~~~--g~~~~~~~vv~~ssGN~g~a-~A~~a~~~   96 (404)
                      .+||.++..       ++|++.++++||||||||++..+   +..+.++  +.    .+|+++||||+|.| ++.++++.
T Consensus        87 ~~pl~~l~~-------~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~~~----~~Il~ATSGdTG~Aa~aaf~~~~  155 (460)
T cd01560          87 IAPLVQLGD-------NLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRNER----ITILVATSGDTGSAAIEGFRGKP  155 (460)
T ss_pred             ccceEEeCC-------CcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcCCC----eEEEEcCCCcHHHHHHHHHhCcC
Confidence            588888763       68999999999999999999865   7777665  44    78999999999988 58999999


Q ss_pred             CCeEEEEecCC-CCHHHHHHHHHcCC---EEEEeCCCCCCCChhhHHHHHHHHHHhC----CCcEeecCCCCCCChhhHH
Q psy14801         97 GYKMVVVMPMK-MSKEKVYTMKALGA---KIIRTQNDKSYDHPEGMIAGAHRIASQM----KNAVVLDQFRNPNNPLSHY  168 (404)
Q Consensus        97 G~~~~iv~p~~-~~~~k~~~l~~~Ga---~v~~v~~~~~~~~~~~~~~~a~~l~~~~----~~~~~~~e~~np~~si~g~  168 (404)
                      |++|+|++|.+ +++.++.+|..+|+   +++.|++  +||+++..+   +++.++.    ...++.....||. -+.++
T Consensus       156 gi~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G--~fDd~q~~v---k~~~~d~~~~~~~~l~saNSiN~~-Ri~~Q  229 (460)
T cd01560         156 NVDVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEG--DFDDCQSLV---KALFADEDFNKKLKLSSANSINWA-RILAQ  229 (460)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcC--CHHHHHHHH---HHHhcChhhHhcceEEEEeccCHH-HHHHH
Confidence            99999999995 99999999999996   7777776  688776554   4433221    1224444445775 57789


Q ss_pred             hhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCC-CCccccccC
Q psy14801        169 ETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPEN-QISYNEVEG  243 (404)
Q Consensus       169 ~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~-~~~~~~~~~  243 (404)
                      .+.++|+.+|+.+    .|+.++||+|+||++.|+.+|.+.-.|--|+|++...+.........+..... ....+..+.
T Consensus       230 ~~yyf~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n~il~~~~~~G~y~~~~~~~~T~spa  309 (460)
T cd01560         230 IVYYFYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNENDVLRRFFKTGRYDRRESLKQTLSPA  309 (460)
T ss_pred             HHHHHHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCChHHHHHHHcCCCcCCCCCCCCcCch
Confidence            9999999999974    48999999999999999999987766656899987766532211111111000 011111111


Q ss_pred             --CCCcccccccCcc--ccC-------------------------------cEEecChHHHHHHHHHHHHhcCcEeccch
Q psy14801        244 --IGYSFAATTLDRN--VID-------------------------------QWGKCGDKDTFLMARRLIKSEGLLVGGSS  288 (404)
Q Consensus       244 --i~~~~~~~~~~~~--~~~-------------------------------~~~~v~d~e~~~~~~~l~~~~gi~~~~~t  288 (404)
                        ++.+....++...  ..+                               ..+.++|+|+.++++++++++|++++|+|
T Consensus       310 mdI~~psn~eR~L~~l~~~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~~~~~~~G~~vdPht  389 (460)
T cd01560         310 MDILKSSNFERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVSDEETLETIREVYEETGYLIDPHT  389 (460)
T ss_pred             hhcCCCCCHHHHHHHHhCCCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEECHHHHHHHHHHHHHhcCEEECchH
Confidence              2111110000000  000                               34679999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhcCCCCeEEEEecCCCCCcccc
Q psy14801        289 GTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK  322 (404)
Q Consensus       289 g~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~  322 (404)
                      +.+++++.++.++  ++.++|++.|+++.|+...
T Consensus       390 Ava~aa~~~~~~~--~~~~~V~l~Ta~p~Kf~~~  421 (460)
T cd01560         390 AVGVRAAERVRKS--PGTPGVVLSTAHPAKFPEA  421 (460)
T ss_pred             HHHHHHHHHHHhc--cCCCEEEEecCCcccCHHH
Confidence            9999999887655  5568899999999887443

The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.

>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]

Probab=99.97  E-value=5.7e-30  Score=230.82  Aligned_cols=294  Identities=21%  Similarity=0.191  Sum_probs=214.1

Q ss_pred             CCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeE
Q psy14801         21 PGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKM  100 (404)
Q Consensus        21 ~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~  100 (404)
                      -.+|||+..++|++.+|++||+|+|++|+||+||...+...+..|++.|+.   +.|.+.+.|.||.|.|.+|+++|++|
T Consensus        54 GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK~---riIAETGAGQHGVAtAta~A~fgl~C  130 (396)
T COG0133          54 GRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKT---RIIAETGAGQHGVATATAAALFGLEC  130 (396)
T ss_pred             CCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCCc---eEEeecCCCcccHHHHHHHHHhCCce
Confidence            346999999999999999999999999999999999999999999999983   45677889999999999999999999


Q ss_pred             EEEecC---CCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHH-HHHHHhCCCcEeecCC-----CCCCChhhHHhhH
Q psy14801        101 VVVMPM---KMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGA-HRIASQMKNAVVLDQF-----RNPNNPLSHYETT  171 (404)
Q Consensus       101 ~iv~p~---~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a-~~l~~~~~~~~~~~e~-----~np~~si~g~~~~  171 (404)
                      +|||..   .....+.-+|+.+||+|+.|..  .....+++++.| +.+......++|+...     --|.-....+.-+
T Consensus       131 ~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~s--Gs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~vI  208 (396)
T COG0133         131 VIYMGAEDVERQALNVFRMRLLGAEVVPVTS--GSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVI  208 (396)
T ss_pred             EEEecchhhhhcccchhhhhhcCceEEEecc--CCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHHH
Confidence            999986   3345667789999999999986  233455555555 4455555667776311     1132122345566


Q ss_pred             HHHHHHH----hCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc--------CCCCC---------
Q psy14801        172 AEEILRD----TGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP--------QSLND---------  230 (404)
Q Consensus       172 a~ei~~q----~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~--------~~~~~---------  230 (404)
                      +.|.=+|    ..+-||.+|.++|+|++..|+...|..- +++++|+|++.+--+...        ...+.         
T Consensus       209 G~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~d-~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~tyll  287 (396)
T COG0133         209 GEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFIDD-ESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKTYLL  287 (396)
T ss_pred             hHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccCC-CCceEEEeccCcCccCCCccceeecCCCceeeecccceee
Confidence            6665444    4445999999999999999998888753 679999999987522111        00000         


Q ss_pred             ---CCC-----CCCccccccCCCCcccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhc
Q psy14801        231 ---VPE-----NQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSL  302 (404)
Q Consensus       231 ---~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~  302 (404)
                         ...     .+......++++...  ..+...-.-+|+.++|.|++++.+.+.+.+||+...-|+.+++.+.++.++.
T Consensus       288 Qd~~GQi~e~hSISAGLDYPgVGPeh--a~l~~~gRa~y~~itD~EAl~af~~L~r~EGIIPALESsHAlA~a~kla~~~  365 (396)
T COG0133         288 QDEDGQILESHSISAGLDYPGVGPEH--AYLKDIGRAEYVSITDEEALEAFQLLSRLEGIIPALESSHALAYALKLAPKL  365 (396)
T ss_pred             EcCCCCEeeeeeeccCCCCCCCChhH--HHHHhcCceeEEecChHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHhchhc
Confidence               000     001111112222211  1112223357899999999999999999999999999999999999999988


Q ss_pred             CCCCeEEEEecCCCCCcccc
Q psy14801        303 RPDQRCVVILADGVRNYLTK  322 (404)
Q Consensus       303 ~~~~~vv~v~~~~~~~~~~~  322 (404)
                      .++..||+-.++.+.+-+.+
T Consensus       366 ~~~~~ivvnlSGRGDKDv~t  385 (396)
T COG0133         366 PKDEIIVVNLSGRGDKDVFT  385 (396)
T ss_pred             CCCcEEEEEccCCCcccHHH
Confidence            77777777777777665443

>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]

Probab=99.96  E-value=2.1e-28  Score=220.68  Aligned_cols=294  Identities=19%  Similarity=0.168  Sum_probs=219.9

Q ss_pred             CCCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCC--CCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCC--hHHHHH
Q psy14801         14 SPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNP--TGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSG--NTGIGL   89 (404)
Q Consensus        14 ~~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~p--tGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssG--N~g~a~   89 (404)
                      .|++++..++||+..++++++.+|++||+|+|++.+  .|.+|.|.+.+++.+|..+|.    +++|++++-  ||.+++
T Consensus         6 f~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~----dTlvT~GgiQSNh~r~t   81 (323)
T COG2515           6 FPRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGA----DTLVTYGGIQSNHVRQT   81 (323)
T ss_pred             CCccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCC----cEEEEecccchhHHHHH
Confidence            477788899999999999999999999999999966  589999999999999999998    899999877  999999


Q ss_pred             HHHHHHcCCeEEEEecCCC----CHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEee-cCCCCCCCh
Q psy14801         90 AMVAAIKGYKMVVVMPMKM----SKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVL-DQFRNPNNP  164 (404)
Q Consensus        90 A~~a~~~G~~~~iv~p~~~----~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~-~e~~np~~s  164 (404)
                      |++|+++|++|+.++-...    -..+....+.+|++++.++...+..........++++.++.+..+.+ .+..||.+ 
T Consensus        82 AavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~~~g-  160 (323)
T COG2515          82 AAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSSPLG-  160 (323)
T ss_pred             HHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCcCccc-
Confidence            9999999999999996543    23467777889999999997433311222223344444443223333 34457753 


Q ss_pred             hhHHhhHHHHHHHHhC--CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCcccccc
Q psy14801        165 LSHYETTAEEILRDTG--GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVE  242 (404)
Q Consensus       165 i~g~~~~a~ei~~q~~--~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~  242 (404)
                      .-||-+.+.||.+|++  .++|.+||.+|||+|.+|+..++....++.+||++............+-....     ..++
T Consensus       161 ~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~L~~-----~~a~  235 (323)
T COG2515         161 ALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQ-----ATAE  235 (323)
T ss_pred             cccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHHHHHHHHH-----HHHH
Confidence            3588999999999998  47999999999999999999999999999999999887764322111110000     0000


Q ss_pred             CCCCc-ccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccc-hhhHHHHHHHHHHh--cCCCCeEEEEecCCCC
Q psy14801        243 GIGYS-FAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGS-SGTAMHVACQAAKS--LRPDQRCVVILADGVR  317 (404)
Q Consensus       243 ~i~~~-~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~-tg~tlag~~~~lk~--~~~~~~vv~v~~~~~~  317 (404)
                      -++.. .........+...-|...++|-.++.+.+++++|+..+|- ||.+++|++..+++  ++.+..|+.+++||..
T Consensus       236 ~~~~~~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillDpVYtgKam~Glid~~~k~~f~~~~~vLfiHtGG~~  314 (323)
T COG2515         236 LLGLGSEADVLLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDPVYTGKAMYGLIDLARKGEFPDGSPVLFIHTGGAP  314 (323)
T ss_pred             HcCCCCCceEEEEecccCCccCCcCHHHHHHHHHHHHhhCcccccccchHHHHHHHHHHhcccCCCCCceEEEEcCCcc
Confidence            01111 0011112223333367788899999999999999999995 99999999999885  4566779999999864

>PLN02356 phosphateglycerate kinase

Probab=99.96  E-value=4.9e-29  Score=241.94  Aligned_cols=240  Identities=18%  Similarity=0.218  Sum_probs=173.0

Q ss_pred             CcEee-cCCCCCCChhhHHhhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc
Q psy14801        151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP  225 (404)
Q Consensus       151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~  225 (404)
                      ..+|+ +|+.||++|+|  +|.|..|+.++..    +|+.+|++++|||  +|+++|+.++..|+++++|+|++.+....
T Consensus        68 ~~v~~KlE~~nPtGS~K--dR~A~~~i~~a~~~g~~~~~g~VveaSSGN--~g~alA~~aa~~G~~~~ivvP~~~s~~K~  143 (423)
T PLN02356         68 CEILGKCEFLNPGGSVK--DRVAVKIIEEALESGQLFPGGVVTEGSAGS--TAISLATVAPAYGCKCHVVIPDDVAIEKS  143 (423)
T ss_pred             CEEEEEeccCCCCCCHH--HHHHHHHHHHHHhCCccCCCCEEEEeCCHH--HHHHHHHHHHHcCCcEEEEECCCCcHHHH
Confidence            44666 99999999999  9999999988764    2788999999999  89999999999999999999998753221


Q ss_pred             CCCCCCCCCCC---------cccc----------ccCC-----------CCccccc-----------------ccCcccc
Q psy14801        226 QSLNDVPENQI---------SYNE----------VEGI-----------GYSFAAT-----------------TLDRNVI  258 (404)
Q Consensus       226 ~~~~~~~~~~~---------~~~~----------~~~i-----------~~~~~~~-----------------~~~~~~~  258 (404)
                      ..+........         ....          ...+           +..+.+.                 ..+..++
T Consensus       144 ~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (423)
T PLN02356        144 QILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCISEEEKENSLFSSSCTGGFFA  223 (423)
T ss_pred             HHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCCcEec
Confidence            11111111000         0000          0000           0000000                 0123456


Q ss_pred             CcEEecChHHHH--HHHHHHHHhcC-----cEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC--------------
Q psy14801        259 DQWGKCGDKDTF--LMARRLIKSEG-----LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR--------------  317 (404)
Q Consensus       259 ~~~~~v~d~e~~--~~~~~l~~~~g-----i~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~--------------  317 (404)
                      +|+.+..+.+++  .++.||+++.+     ||++.|||++++|+.+++|+++|+.+|++|+|.+..              
T Consensus       224 ~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVigVep~~s~~~~~~~~~~~~~~s  303 (423)
T PLN02356        224 DQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTRE  303 (423)
T ss_pred             CccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccccccchhhhhh
Confidence            787777776663  46888888763     899999999999999999999999999999996532              


Q ss_pred             -----------Cccccccchh--------HHhhcCccCcHHHHHHh-------------ccchhHHHHHHHHHHhcCCCC
Q psy14801        318 -----------NYLTKFISDE--------WMIEKGFLDEAEELEEM-------------IHSGTAMHVACQAAKSLRPDQ  365 (404)
Q Consensus       318 -----------~~~~~~~~~~--------~~~~~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~~~~~~  365 (404)
                                 +++.+++...        -..|..+.++|+++..+             .|||+++++++++++++++++
T Consensus       304 ~~~G~~~~~~~~tia~Gig~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~vg~Ssaa~laaa~~la~~~~~g~  383 (423)
T PLN02356        304 EAEGRRLKNPFDTITEGIGINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSSSAMNCVGAVRVAQSLGPGH  383 (423)
T ss_pred             hhcCCccCCCCCeecCcCcCCCCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCeeEeECHHHHHHHHHHHHHHhCCCC
Confidence                       0111222111        12344456777776663             499999999999998877899


Q ss_pred             eEEEEEcCCCcchhhccCCHHHHHHcCCC
Q psy14801        366 RCVVILADGVRNYLTKFISDEWMIEKGFL  394 (404)
Q Consensus       366 ~iv~i~~D~g~rYl~~~~~~~w~~~~~~~  394 (404)
                      +||+|+||+|+||++|+|||+|+.++|+.
T Consensus       384 ~VV~Il~d~G~kyl~~~~~~~w~~~~~~~  412 (423)
T PLN02356        384 TIVTILCDSGMRHLSKFHDPQYLSQHGLT  412 (423)
T ss_pred             eEEEEECCCCcchhhhhcCHHHHHhcCCC
Confidence            99999999999999999999999999973

>KOG1395|consensus

Probab=99.94  E-value=3.1e-26  Score=208.69  Aligned_cols=294  Identities=18%  Similarity=0.187  Sum_probs=201.5

Q ss_pred             CCCCCCeeecCCCCCCC--CCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcC
Q psy14801         20 VPGKVPLLPQSKQGSIL--LPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKG   97 (404)
Q Consensus        20 ~~g~TPl~~~~~l~~~~--g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G   97 (404)
                      +-.+|||++.++|.+.+  |.+||+|+|++|||||+|...+...+..+++.|+.   ..|.+.+.|.||.|+|.+|+++|
T Consensus       119 ~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGkk---nviaETGAGQhGvatA~a~a~FG  195 (477)
T KOG1395|consen  119 LGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGKK---NVIAETGAGQHGVATATACAKFG  195 (477)
T ss_pred             cCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhccc---ceeeccCCCccchHHHHHHHHhC
Confidence            44579999999998844  57999999999999999999999988888888873   45667779999999999999999


Q ss_pred             CeEEEEecCC---CCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHH-HHHhCCCcEeecCC---CCCCChhh--HH
Q psy14801         98 YKMVVVMPMK---MSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHR-IASQMKNAVVLDQF---RNPNNPLS--HY  168 (404)
Q Consensus        98 ~~~~iv~p~~---~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~-l~~~~~~~~~~~e~---~np~~si~--g~  168 (404)
                      ++|+|+|-.+   ....+.-+|+.+||+|+.++.. .- -..+....+-+ ........+|+...   -.|..++-  .+
T Consensus       196 l~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sG-t~-tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fh  273 (477)
T KOG1395|consen  196 LDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSG-TR-TLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFH  273 (477)
T ss_pred             CceEEEechhHHHHHHHHHHHHHHhCceEeecCCC-ce-ehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHH
Confidence            9999999863   4567788999999999999862 21 11111112222 22222234554211   11222221  23


Q ss_pred             hhHHHHHHH-HhC---CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC--------CCCC------
Q psy14801        169 ETTAEEILR-DTG---GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ--------SLND------  230 (404)
Q Consensus       169 ~~~a~ei~~-q~~---~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~--------~~~~------  230 (404)
                      ..++.|--. +++   +.||.+|.++|+|++.+|+..-|+.- .-+++|+|+..+.....+.        ..+.      
T Consensus       274 svIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~d-k~v~~igveaagdg~dtp~hsatltagd~Gv~hG~~t  352 (477)
T KOG1395|consen  274 SVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIRD-KSVGMIGVEAAGDGVDTPKHSATLTAGDVGVFHGVTT  352 (477)
T ss_pred             HHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhcc-chhheeeeeecccccCCcchhceeeccccccccccee
Confidence            455554332 332   35999999999999999998888653 3357788776554221110        0110      


Q ss_pred             -----------CCCCCCccccccCCCCcccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHH
Q psy14801        231 -----------VPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAA  299 (404)
Q Consensus       231 -----------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~l  299 (404)
                                 .+..+.....-.|++..+  ..+......+++.++|.|.++..+.+.+.+||+..+-+..+++|...+.
T Consensus       353 y~lq~~dGqi~~phsIsAGLdYpGvgPel--s~~k~~grae~isitd~eclegfk~~srlEGIIPAlEssHAva~~~~lc  430 (477)
T KOG1395|consen  353 YVLQDTDGQIFDPHSISAGLDYPGVGPEL--SHLKETGRAEFISITDAECLEGFKQLSRLEGIIPALESSHAVAGEAELC  430 (477)
T ss_pred             eeeeccCCccccCCccccCCCCCCCChhH--HHHHhcCceeEEecChHHHHHHHHHHHHhcccccCCchhhHHHHHHHhc
Confidence                       000111111112222111  1112334568899999999999999999999999999999999999999


Q ss_pred             HhcCCCCeEEEEecCCCCCccc
Q psy14801        300 KSLRPDQRCVVILADGVRNYLT  321 (404)
Q Consensus       300 k~~~~~~~vv~v~~~~~~~~~~  321 (404)
                      |+.+++..||+-.+|.+.+-+.
T Consensus       431 k~l~~~k~ivi~~sGrGdkDvq  452 (477)
T KOG1395|consen  431 KTLPEDKVIVINISGRGDKDVQ  452 (477)
T ss_pred             cccCCCcEEEEEecCCCCchHH
Confidence            9999999999999998865443

>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]

Probab=99.93  E-value=2.3e-24  Score=195.04  Aligned_cols=289  Identities=19%  Similarity=0.185  Sum_probs=197.6

Q ss_pred             CCCCCCeeecCCCCCCCC--CeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEe-cCCChHHHHHHHHHHHc
Q psy14801         20 VPGKVPLLPQSKQGSILL--PTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVE-PSSGNTGIGLAMVAAIK   96 (404)
Q Consensus        20 ~~g~TPl~~~~~l~~~~g--~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~-~ssGN~g~a~A~~a~~~   96 (404)
                      +-.+|||++..+|.+-+|  ++||+|.|+..||||||...|....-.++..|.    ..+++ .+.|.+|.|++.+|+.+
T Consensus        75 ~gRPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~----~rl~TETGAGQWGsAlslA~alf  150 (432)
T COG1350          75 IGRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGA----KRLTTETGAGQWGSALSLAAALF  150 (432)
T ss_pred             hCCCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCc----eeeecccCCchHHHHHHHHHHHh
Confidence            335899999999988655  599999999999999999999999999998887    55554 55889999999999999


Q ss_pred             CCeEEEEecC---CCCHHHHHHHHHcCCEEEEeCCCCCCCCh---------------hhHHHHHHHHHHhCCCcEeecCC
Q psy14801         97 GYKMVVVMPM---KMSKEKVYTMKALGAKIIRTQNDKSYDHP---------------EGMIAGAHRIASQMKNAVVLDQF  158 (404)
Q Consensus        97 G~~~~iv~p~---~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~---------------~~~~~~a~~l~~~~~~~~~~~e~  158 (404)
                      |++|+|||-.   ...+.++.+|+.+||+|+..|.+  ..+.               .-++..|-+.+-++++.-|....
T Consensus       151 ~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~--~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~lGS  228 (432)
T COG1350         151 GLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSE--LTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSLGS  228 (432)
T ss_pred             CceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcc--hhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecchh
Confidence            9999999976   45677889999999999998863  1111               11122232333233323332110


Q ss_pred             -CCCCChhhHHhhHHHHHHH---HhCCCcCEEEEccCCChhHHHHHHHHHHhC----CCcEEEEEcCCCCcccccCCCCC
Q psy14801        159 -RNPNNPLSHYETTAEEILR---DTGGKVDMIVLGCGTGGTASGIGRKIKEKC----PSCKLVGADPFGSILAQPQSLND  230 (404)
Q Consensus       159 -~np~~si~g~~~~a~ei~~---q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~----~~~~vi~V~p~~~~~~~~~~~~~  230 (404)
                       .|  +.+-|+--+++|..+   ++++.||.+|-++|+|++++|+..-|....    ..+++|+|+|..++.+......-
T Consensus       229 Vln--hvllhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~GeY~Y  306 (432)
T COG1350         229 VLN--HVLLHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTKGEYRY  306 (432)
T ss_pred             HHH--HHHHHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCccccceeec
Confidence             11  123577888999854   455679999999999999999999887632    22799999999997654432221


Q ss_pred             -CCCCCCc--cccccCCCCcccccc-----------------cCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhh
Q psy14801        231 -VPENQIS--YNEVEGIGYSFAATT-----------------LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGT  290 (404)
Q Consensus       231 -~~~~~~~--~~~~~~i~~~~~~~~-----------------~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~  290 (404)
                       .+++...  ...+-.++..+.|--                 +.+.-.-+....+..|+++++..+++.+|++-.|-|+.
T Consensus       307 D~gDtagltPllKMyTlGhd~vpPpihAgGLRYHG~aPtls~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGiVPAPEsaH  386 (432)
T COG1350         307 DFGDTAGLTPLLKMYTLGHDYVPPPIHAGGLRYHGVAPTLSLLVKEGIVEARAYDQEEVFEAAVLFARTEGIVPAPESAH  386 (432)
T ss_pred             cCCchhccchhhhhhccCCCccCCCcccccccccCcChHHHHHHHcCcccceecChHHHHHHHHHHHHhcCCccCCcchh
Confidence             1111000  000111222221111                 11111224456788999999999999999999999999


Q ss_pred             HHHHHHHHHHhcC-CCC--eEEEEecCCC
Q psy14801        291 AMHVACQAAKSLR-PDQ--RCVVILADGV  316 (404)
Q Consensus       291 tlag~~~~lk~~~-~~~--~vv~v~~~~~  316 (404)
                      ++.++.+.+.+.. .+.  .|++-.+|++
T Consensus       387 Ai~~aid~A~~a~~~geekvI~fnlSGHG  415 (432)
T COG1350         387 AIKAAIDEALKAREEGEEKVILFNLSGHG  415 (432)
T ss_pred             hHHHHHHHHHhccccCceeEEEEeccCcc
Confidence            9999988876532 233  3444445444

>PLN02556 cysteine synthase/L-3-cyanoalanine synthase

Probab=99.93  E-value=1.4e-25  Score=216.92  Aligned_cols=237  Identities=15%  Similarity=0.137  Sum_probs=162.0

Q ss_pred             CcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC----cC-EEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccc
Q psy14801        151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK----VD-MIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQ  224 (404)
Q Consensus       151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~----~~-~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~  224 (404)
                      ..+|+ +|+.||++|.|  +|.|..|+.++.++    |+ ..||+++|||  +|+++|+.++..|+++++|+|++.+...
T Consensus        74 ~~I~~KlE~~nPtGS~K--dR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN--~G~alA~~a~~~G~~~~ivvp~~~~~~k  149 (368)
T PLN02556         74 AYIAAKQEMFQPTSSIK--DRPALAMIEDAEKKNLITPGKTTLIEPTSGN--MGISLAFMAAMKGYKMILTMPSYTSLER  149 (368)
T ss_pred             CEEEEEecccCCccchH--HHHHHHHHHHHHHcCCcCCCCCEEEEeCCch--HHHHHHHHHHHcCCCEEEEECCCCCHHH
Confidence            45666 99999999999  99999999988643    44 4788999999  9999999999999999999999865322


Q ss_pred             cCCCCCCCCCCCccccccCCCC------cccccccCccccCcEEecChHHH--HHHHHHHHHhc-----CcEeccchhhH
Q psy14801        225 PQSLNDVPENQISYNEVEGIGY------SFAATTLDRNVIDQWGKCGDKDT--FLMARRLIKSE-----GLLVGGSSGTA  291 (404)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~i~~------~~~~~~~~~~~~~~~~~v~d~e~--~~~~~~l~~~~-----gi~~~~~tg~t  291 (404)
                      ...+...++.........+.+.      .......+..+++|+.+..+.++  ..++.||+++.     .||++.|||++
T Consensus       150 ~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~EI~eq~~~~~D~vV~~vGtGGt  229 (368)
T PLN02556        150 RVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGGT  229 (368)
T ss_pred             HHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchH
Confidence            1111111111100000000000      01111111233455555555554  24677777764     38999999999


Q ss_pred             HHHHHHHHHhcCCCCeEEEEecCCCCC--------ccccccchh--------HHhhcCccCcHHHHHH------------
Q psy14801        292 MHVACQAAKSLRPDQRCVVILADGVRN--------YLTKFISDE--------WMIEKGFLDEAEELEE------------  343 (404)
Q Consensus       292 lag~~~~lk~~~~~~~vv~v~~~~~~~--------~~~~~~~~~--------~~~~~~~~~~~~~~~~------------  343 (404)
                      ++|+.+++|+.+|+.+|++|++.+...        +...+++..        -..+..+.++|+++..            
T Consensus       230 ~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~~~~~~i~g~g~~~~p~~~~~~~~d~~v~Vsd~ea~~a~r~l~~~eGi~  309 (368)
T PLN02556        230 VSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVLEVSSEDAVNMARELALKEGLM  309 (368)
T ss_pred             HHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCeeeeeccCCCCccccchhhCCeEEEECHHHHHHHHHHHHHHcCCE
Confidence            999999999999999999999966421        111111101        1223345566666555            


Q ss_pred             -hccchhHHHHHHHHHHhcC-CCCeEEEEEcCCCcchhhccCCHHHHHHc
Q psy14801        344 -MIHSGTAMHVACQAAKSLR-PDQRCVVILADGVRNYLTKFISDEWMIEK  391 (404)
Q Consensus       344 -g~SsGa~~~~a~~~~~~~~-~~~~iv~i~~D~g~rYl~~~~~~~w~~~~  391 (404)
                       +.|||+++++|++++++.. ++++||+|+||+|+||+|++|+++|+++-
T Consensus       310 vg~ssgA~~~aal~~a~~~~~~~~~IV~v~~d~g~kY~~~~~~~~~~~~~  359 (368)
T PLN02556        310 VGISSGANTVAALRLAKMPENKGKLIVTVHPSFGERYLSSVLFQELRKEA  359 (368)
T ss_pred             EecCHHHHHHHHHHHhhhccCCcCEEEEEECCCCcccCChhhhHHHHHHH
Confidence             3499999999999998753 57899999999999999999999999764

>PLN02565 cysteine synthase

Probab=99.92  E-value=7.8e-25  Score=208.78  Aligned_cols=234  Identities=16%  Similarity=0.167  Sum_probs=160.6

Q ss_pred             cEee-cCCCCCCChhhHHhhHHHHHHHHhCC----CcC-EEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc
Q psy14801        152 AVVL-DQFRNPNNPLSHYETTAEEILRDTGG----KVD-MIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP  225 (404)
Q Consensus       152 ~~~~-~e~~np~~si~g~~~~a~ei~~q~~~----~~~-~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~  225 (404)
                      .+|+ +|+.||++|.|  +|.|..|+..+.+    .++ ..||+++|||  +|+++|+.++..|+++++|+|++++....
T Consensus        31 ~i~~K~E~~nPtGSfK--dR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN--~g~alA~~a~~~G~~~~ivvp~~~~~~k~  106 (322)
T PLN02565         31 RIAAKLEMMEPCSSVK--DRIGYSMITDAEEKGLIKPGESVLIEPTSGN--TGIGLAFMAAAKGYKLIITMPASMSLERR  106 (322)
T ss_pred             eEEEEecccCCccchH--HHHHHHHHHHHHHcCCCCCCCcEEEEECCCh--HHHHHHHHHHHcCCeEEEEeCCCCcHHHH
Confidence            4666 99999999999  9999999988753    245 5699999999  99999999999999999999999754322


Q ss_pred             CCCCCCCCCCCc-cc--cc-c--CCCCcccccccCccccCcEEecChHHHH--HHHHHHHHhcC-----cEeccchhhHH
Q psy14801        226 QSLNDVPENQIS-YN--EV-E--GIGYSFAATTLDRNVIDQWGKCGDKDTF--LMARRLIKSEG-----LLVGGSSGTAM  292 (404)
Q Consensus       226 ~~~~~~~~~~~~-~~--~~-~--~i~~~~~~~~~~~~~~~~~~~v~d~e~~--~~~~~l~~~~g-----i~~~~~tg~tl  292 (404)
                      ..+......... ..  .. .  .....+....-+..+++++.+..++++.  .++.||+++.+     +|+..|||+++
T Consensus       107 ~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~Ei~~q~~~~~d~vv~~vG~GG~l  186 (322)
T PLN02565        107 IILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEIWKGTGGKVDAFVSGIGTGGTI  186 (322)
T ss_pred             HHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHHHHHhcCCCCCEEEEcCCchHHH
Confidence            222211111100 00  00 0  0000000000012344555555455542  34567777653     88899999999


Q ss_pred             HHHHHHHHhcCCCCeEEEEecCCCCCc--------cccccchh-------H-HhhcCccCcHHHHHHh------------
Q psy14801        293 HVACQAAKSLRPDQRCVVILADGVRNY--------LTKFISDE-------W-MIEKGFLDEAEELEEM------------  344 (404)
Q Consensus       293 ag~~~~lk~~~~~~~vv~v~~~~~~~~--------~~~~~~~~-------~-~~~~~~~~~~~~~~~g------------  344 (404)
                      +|+.+++|+..|+.+|++|+|.++..+        ...+++..       | ..|..+.++|+++..+            
T Consensus       187 ~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~v~V~d~ea~~a~~~l~~~~gi~v  266 (322)
T PLN02565        187 TGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVVQVSSDEAIETAKLLALKEGLLV  266 (322)
T ss_pred             HHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCCcCCHhHCCEEEEECHHHHHHHHHHHHHHhCcEE
Confidence            999999999999999999999664221        11121111       1 2344456777776553            


Q ss_pred             -ccchhHHHHHHHHHHhc-CCCCeEEEEEcCCCcchhhccCCHHHHH
Q psy14801        345 -IHSGTAMHVACQAAKSL-RPDQRCVVILADGVRNYLTKFISDEWMI  389 (404)
Q Consensus       345 -~SsGa~~~~a~~~~~~~-~~~~~iv~i~~D~g~rYl~~~~~~~w~~  389 (404)
                       .|||++++++++++++. .++++||+|+||+|+||++|+++++|+.
T Consensus       267 g~ssga~laaa~~~a~~~~~~~~~vV~v~~d~G~ky~~~~~~~~~~~  313 (322)
T PLN02565        267 GISSGAAAAAAIKIAKRPENAGKLIVVIFPSFGERYLSSVLFESVKK  313 (322)
T ss_pred             eccHHHHHHHHHHHHHhcCCCCCeEEEEECCCccccCCchhhHHHHH
Confidence             49999999999999875 4578999999999999999988888874

>PLN03013 cysteine synthase

Probab=99.91  E-value=3.3e-24  Score=208.40  Aligned_cols=235  Identities=15%  Similarity=0.194  Sum_probs=160.3

Q ss_pred             CcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC----cC-EEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccc
Q psy14801        151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK----VD-MIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQ  224 (404)
Q Consensus       151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~----~~-~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~  224 (404)
                      ..+|+ +|+.||++|+|  ||.|..|+.+++++    |+ ..||+++|||  +|+++|+.++..|+++++|+|++.+...
T Consensus       138 ~~Iy~KlE~lNPtGSfK--dR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN--~G~ALA~~a~~~G~~~~VvvP~~~s~~K  213 (429)
T PLN03013        138 ANIAAKLEIMEPCCSVK--DRIGYSMVTDAEQKGFISPGKSVLVEPTSGN--TGIGLAFIAASRGYRLILTMPASMSMER  213 (429)
T ss_pred             CeEEEEeccCCCccccH--HHHHHHHHHHHHHcCCcCCCCcEEEEECCcH--HHHHHHHHHHHcCCCEEEEECCCCcHHH
Confidence            35666 99999999999  99999999988642    55 6799999999  9999999999999999999999875432


Q ss_pred             cCCCCCCCCCCCccccccC------CCCcccccccCccccCcEEecChHHHH--HHHHHHHHhc-----CcEeccchhhH
Q psy14801        225 PQSLNDVPENQISYNEVEG------IGYSFAATTLDRNVIDQWGKCGDKDTF--LMARRLIKSE-----GLLVGGSSGTA  291 (404)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~------i~~~~~~~~~~~~~~~~~~~v~d~e~~--~~~~~l~~~~-----gi~~~~~tg~t  291 (404)
                      ...+...++.........+      ....+.....+..+++|+.+..+.++.  .++.||+++.     .+|++.||||+
T Consensus       214 ~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~EI~eq~~~~~D~vV~~vGtGGt  293 (429)
T PLN03013        214 RVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGT  293 (429)
T ss_pred             HHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHH
Confidence            2212111111100000000      000011111122345666666665542  4567777764     38899999999


Q ss_pred             HHHHHHHHHhcCCCCeEEEEecCCCCCc--------cccccchhH--------HhhcCccCcHHHHHH------------
Q psy14801        292 MHVACQAAKSLRPDQRCVVILADGVRNY--------LTKFISDEW--------MIEKGFLDEAEELEE------------  343 (404)
Q Consensus       292 lag~~~~lk~~~~~~~vv~v~~~~~~~~--------~~~~~~~~~--------~~~~~~~~~~~~~~~------------  343 (404)
                      ++|+.+++|+..|+.+|++|+|.+...+        ...+++..+        ..|..+.++|++++.            
T Consensus       294 isGiar~lKe~~P~vkVigVep~gs~~l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~vv~VsD~ea~~a~r~La~~eGi~  373 (429)
T PLN03013        294 ITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLM  373 (429)
T ss_pred             HHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCCCCcccCcccCCcCCHhHHHHhccEEEEECHHHHHHHHHHHHHHcCCE
Confidence            9999999999999999999999664221        112222111        234445677777665            


Q ss_pred             -hccchhHHHHHHHHHHhcC-CCCeE-EEEEcCCCcchhhc--cCC-HHHHH
Q psy14801        344 -MIHSGTAMHVACQAAKSLR-PDQRC-VVILADGVRNYLTK--FIS-DEWMI  389 (404)
Q Consensus       344 -g~SsGa~~~~a~~~~~~~~-~~~~i-v~i~~D~g~rYl~~--~~~-~~w~~  389 (404)
                       +.|||++++|+++++++.. .+++| |+|+||+|+||+++  .|+ ..|++
T Consensus       374 vG~SSGAalaAalkla~~~~~~g~~IVv~i~~d~g~~Y~~~~~~~~~~~~~~  425 (429)
T PLN03013        374 VGISSGAAAAAAIKVAKRPENAGKLIAVSLFASGRDIYTPRCSSLSGKRWRK  425 (429)
T ss_pred             EecCHHHHHHHHHHHhhhccCCCCEEEEEEcCCCchhchhhhhcCCCcchhh
Confidence             3499999999999998654 46665 77788999999998  354 67874

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.91  E-value=4.2e-24  Score=214.74  Aligned_cols=240  Identities=22%  Similarity=0.307  Sum_probs=161.9

Q ss_pred             CcEee-cCCCCCCChhhHHhhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccc-
Q psy14801        151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQ-  224 (404)
Q Consensus       151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~-  224 (404)
                      ..+|+ +|+.||++|.|  +|.|..++.++.+    .++..|++++|||  +|+++|+.++..|+++++|+|++.+... 
T Consensus        26 ~~i~~K~E~~nptGS~K--~R~a~~~l~~a~~~g~~~~g~~vv~~ssGN--~g~alA~~a~~~G~~~~iv~p~~~~~~k~  101 (454)
T TIGR01137        26 CELLAKCEFFNPGGSVK--DRIALRMIEDAEASGRLKPGDTIIEPTSGN--TGIGLALVAAIKGYKCIIVLPEKMSNEKV  101 (454)
T ss_pred             ceEEEEEhhcCCCcchH--HHHHHHHHHHHHHcCCCCCCCEEEEeCCcH--HHHHHHHHHHHcCCeEEEEeCCCcCHHHH
Confidence            35666 99999999999  9999999988753    2556789999999  9999999999999999999998874321 


Q ss_pred             ------cCCCCCCCCCC-Ccc-----ccccCCCCcccccccCccccCcEEecChHHH--HHHHHHHHHhc-----CcEec
Q psy14801        225 ------PQSLNDVPENQ-ISY-----NEVEGIGYSFAATTLDRNVIDQWGKCGDKDT--FLMARRLIKSE-----GLLVG  285 (404)
Q Consensus       225 ------~~~~~~~~~~~-~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~--~~~~~~l~~~~-----gi~~~  285 (404)
                            +..+...+... ...     ..+..+    ........+.++|.+..++..  ..++.||+++.     .+|++
T Consensus       102 ~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l----~~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~  177 (454)
T TIGR01137       102 DVLKALGAEIVRTPTAAAFDSPESHIGVAKRL----VREIPGAHILDQYNNPSNPLAHYDGTGPEILEQCEGKLDMFVAG  177 (454)
T ss_pred             HHHHHCCCEEEEcCCccCCCchHHHHHHHHHH----HHhCCCcEecccCCChhhHHHHHHhhHHHHHHHhCCCCCEEEEe
Confidence                  11111111000 000     000000    000001112233333333332  23355566553     48999


Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEecCCCCC-------------ccccccchh-H-------HhhcCccCcHHHHHH-
Q psy14801        286 GSSGTAMHVACQAAKSLRPDQRCVVILADGVRN-------------YLTKFISDE-W-------MIEKGFLDEAEELEE-  343 (404)
Q Consensus       286 ~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~-------------~~~~~~~~~-~-------~~~~~~~~~~~~~~~-  343 (404)
                      .|||++++|+.+++++..|+.+|++|+|.+..-             +...+++.. +       ..+..+.++++++++ 
T Consensus       178 vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~~V~~~e~~~a  257 (454)
T TIGR01137       178 AGTGGTITGIARYLKESNPKCRIVGADPEGSILAQPENLNKTGRTPYKVEGIGYDFIPTVLDRKVVDEWIKTDDKESFKM  257 (454)
T ss_pred             cCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCcccCCCCCCccCCCCCCCCCCCcCCchhCCeEEEECHHHHHHH
Confidence            999999999999999999999999999954311             111111111 0       122334566666554 


Q ss_pred             ------------hccchhHHHHHHHHHH-hcCCCCeEEEEEcCCCcchhhccCCHHHHHHcCCCCchh
Q psy14801        344 ------------MIHSGTAMHVACQAAK-SLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAE  398 (404)
Q Consensus       344 ------------g~SsGa~~~~a~~~~~-~~~~~~~iv~i~~D~g~rYl~~~~~~~w~~~~~~~~~~~  398 (404)
                                  +.|||+++++++++++ .++++++||+|+||+|+||++++|+++|+.++++..+.+
T Consensus       258 ~~~l~~~~gi~~~~ssg~~~aa~~~~~~~~~~~~~~vv~~~~d~g~~y~~~~~~~~w~~~~~~~~~~~  325 (454)
T TIGR01137       258 ARRLIKEEGLLVGGSSGSAVVAALKAAEDELTEDQVIVVLLPDSIRNYMTKFLNDEWMKDNGFLDDEV  325 (454)
T ss_pred             HHHHHHHhCccCcHHHHHHHHHHHHHHHhhcCCCCEEEEEECCCCccccCcccChHHHHhcCCccccc
Confidence                        3499999999999988 577789999999999999999999999999999875433

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>PRK10717 cysteine synthase A; Provisional

Probab=99.91  E-value=5.4e-24  Score=204.71  Aligned_cols=241  Identities=18%  Similarity=0.230  Sum_probs=161.2

Q ss_pred             CCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccc
Q psy14801        150 KNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQ  224 (404)
Q Consensus       150 ~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~  224 (404)
                      +..+|+ +|+.||++|.|  +|.+..++.++..    .++..|+++++||  +|+++|+.++..|+++++|+|...+...
T Consensus        27 g~~i~~K~E~~nptGS~K--~Rga~~~v~~a~~~g~~~~g~~vv~aSsGN--~g~alA~~a~~~G~~~~vv~p~~~~~~k  102 (330)
T PRK10717         27 GCEILGKAEFLNPGGSVK--DRAALNIIWDAEKRGLLKPGGTIVEGTAGN--TGIGLALVAAARGYKTVIVMPETQSQEK  102 (330)
T ss_pred             CCeEEEEeeccCCCCCch--HHHHHHHHHHHHHcCCCCCCCEEEEeCCcH--HHHHHHHHHHHcCCcEEEEeCCCCCHHH
Confidence            345666 99999999999  9999999887753    2556789999999  9999999999999999999999874321


Q ss_pred             cCCCCCCCCCCC--ccc-------cc---cCCCCcccccc-cCccccCcEEecChHHH--HHHHHHHHHhcC-----cEe
Q psy14801        225 PQSLNDVPENQI--SYN-------EV---EGIGYSFAATT-LDRNVIDQWGKCGDKDT--FLMARRLIKSEG-----LLV  284 (404)
Q Consensus       225 ~~~~~~~~~~~~--~~~-------~~---~~i~~~~~~~~-~~~~~~~~~~~v~d~e~--~~~~~~l~~~~g-----i~~  284 (404)
                      ...+........  ...       ..   ..+........ -...+++++.+..+.+.  ..++.||+++.+     +++
T Consensus       103 ~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~ql~~~~d~iv~  182 (330)
T PRK10717        103 KDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHYETTGPEIWEQTDGKVDGFVC  182 (330)
T ss_pred             HHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHHHHhHHHHHHHhcCCCCCEEEE
Confidence            111111111000  000       00   00000000000 01122333333322223  134566666653     888


Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCc--------------cccccc--------hhHHhhcCccCcHHHHH
Q psy14801        285 GGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNY--------------LTKFIS--------DEWMIEKGFLDEAEELE  342 (404)
Q Consensus       285 ~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~--------------~~~~~~--------~~~~~~~~~~~~~~~~~  342 (404)
                      ..|||++++|+.+.+++..|+.+|++|+|.+..-+              +...++        .....+..+.++|+++.
T Consensus       183 ~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~  262 (330)
T PRK10717        183 AVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGRITANLEGAPIDDAIRIPDEEAL  262 (330)
T ss_pred             ecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccccCCcCCCCCcccCcCCCCcCCcccChhhCCEEEEECHHHHH
Confidence            88999999999999999889999999999654211              111111        00122334556776665


Q ss_pred             Hh-------------ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhccCCHHHHHHcCCC
Q psy14801        343 EM-------------IHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFL  394 (404)
Q Consensus       343 ~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~~~~~~w~~~~~~~  394 (404)
                      ++             .|||+++++++++++++.++++||+|+||+|+||++++|||+|+.++++.
T Consensus       263 ~a~~~l~~~~gi~vepssga~laa~~~l~~~~~~~~~Vv~v~~g~g~ky~~~~~~d~~~~~~~~~  327 (330)
T PRK10717        263 STAYRLLEEEGLCLGGSSGINVAAALRLARELGPGHTIVTILCDSGERYQSKLFNPDFLREKGLP  327 (330)
T ss_pred             HHHHHHHHhcCCeEeecHHHHHHHHHHHHHhcCCCCEEEEEECCCchhhcccccCHHHHHhcCCC
Confidence            53             39999999999999887778999999999999999999999999999874

>TIGR01138 cysM cysteine synthase B

Probab=99.90  E-value=5.1e-23  Score=194.03  Aligned_cols=227  Identities=15%  Similarity=0.203  Sum_probs=152.9

Q ss_pred             CCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccc
Q psy14801        150 KNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQ  224 (404)
Q Consensus       150 ~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~  224 (404)
                      +..+|+ +|+.||+||.|  +|.+..++..+..    .++..||++++||  +|+++|+.++..|+++++++|++.+...
T Consensus        22 g~~i~~K~E~~nptGS~K--~R~a~~~v~~a~~~g~~~~g~~vv~aSsGN--~g~alA~~a~~~G~~~~i~~p~~~~~~k   97 (290)
T TIGR01138        22 GSEVWLKLEGNNPAGSVK--DRPALSMIVEAEKRGEIKPGDVLIEATSGN--TGIALAMIAALKGYRMKLLMPDNMSQER   97 (290)
T ss_pred             CCeEEEEEccCCCCccHH--HHHHHHHHHHHHHcCCCCCCCEEEEECCCh--HHHHHHHHHHHcCCeEEEEECCCCCHHH
Confidence            345666 99999999999  9999999988753    2457899999999  9999999999999999999999875322


Q ss_pred             cCCCCCCCCCCCccc---ccc---CCCCcccccccCccccCcEEecChHHHH--HHHHHHHHhc-----CcEeccchhhH
Q psy14801        225 PQSLNDVPENQISYN---EVE---GIGYSFAATTLDRNVIDQWGKCGDKDTF--LMARRLIKSE-----GLLVGGSSGTA  291 (404)
Q Consensus       225 ~~~~~~~~~~~~~~~---~~~---~i~~~~~~~~~~~~~~~~~~~v~d~e~~--~~~~~l~~~~-----gi~~~~~tg~t  291 (404)
                      ...+...........   ...   .....+ .......+++++.+..+++.+  .++.||+++.     .+|+..|||++
T Consensus        98 ~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l-~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~  176 (290)
T TIGR01138        98 KAAMRAYGAELILVTKEEGMEGARDLALEL-ANRGEGKLLDQFNNPDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGT  176 (290)
T ss_pred             HHHHHHcCCEEEEeCCCCChHHHHHHHHHH-HHhCCCCCCCccCCcccHHHHhHhHHHHHHHHcCCCCCEEEECCCchHH
Confidence            111111111100000   000   000000 000011233444444444442  3456666654     38889999999


Q ss_pred             HHHHHHHHHhcCCCCeEEEEecCCCCCc----------cccccchhHHhhcCccCcHHHHHHh-------------ccch
Q psy14801        292 MHVACQAAKSLRPDQRCVVILADGVRNY----------LTKFISDEWMIEKGFLDEAEELEEM-------------IHSG  348 (404)
Q Consensus       292 lag~~~~lk~~~~~~~vv~v~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~g-------------~SsG  348 (404)
                      ++|+.+++|+..|+.+|++|+|.++...          .+..+ +.-..|..+.++|++++.+             .|||
T Consensus       177 ~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g~~~~~~~~~~~~~-~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~~g~ssg  255 (290)
T TIGR01138       177 IMGVSRFLKEQNPPVQIVGLQPEEGSSIPGIRRWPTEYLPGIF-DASLVDRVLDIHQRDAENTMRELAVREGIFCGVSSG  255 (290)
T ss_pred             HHHHHHHHHHhCCCCEEEEEeCCCCCCccCCCCCCCCcCCccc-ChhhCcEEEEECHHHHHHHHHHHHHHhCceEcHhHH
Confidence            9999999999999999999999764221          11111 1112334456777776653             4999


Q ss_pred             hHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhc-cC
Q psy14801        349 TAMHVACQAAKSLRPDQRCVVILADGVRNYLTK-FI  383 (404)
Q Consensus       349 a~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~-~~  383 (404)
                      +++++++++++++ ++++||+|+||+|+||+|| +|
T Consensus       256 a~laa~~~~~~~~-~~~~vv~v~~d~g~ky~~~~~~  290 (290)
T TIGR01138       256 GAVAAALRLAREL-PDAVVVAIICDRGDRYLSTGVF  290 (290)
T ss_pred             HHHHHHHHHHHHC-CCCeEEEEECCCCccccCcccC
Confidence            9999999998887 6789999999999999998 44

Alternate name: O-acetylserine (thiol)-lyase

>PRK11761 cysM cysteine synthase B; Provisional

Probab=99.89  E-value=8.3e-23  Score=193.00  Aligned_cols=227  Identities=14%  Similarity=0.185  Sum_probs=148.9

Q ss_pred             CcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC----cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc
Q psy14801        151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK----VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP  225 (404)
Q Consensus       151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~----~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~  225 (404)
                      ..+|+ +|+.||++|.|  +|.+..++.++..+    ++..||+++|||  +|+++|+.++..|+++++++|++.+....
T Consensus        27 ~~i~~K~E~~nptGS~K--~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN--~g~alA~~a~~~G~~~~i~~p~~~~~~k~  102 (296)
T PRK11761         27 NTILAKLEGNNPAGSVK--DRPALSMIVQAEKRGEIKPGDTLIEATSGN--TGIALAMIAAIKGYRMKLIMPENMSQERR  102 (296)
T ss_pred             CEEEEEEcccCCCCCch--hHHHHHHHHHHHHcCCCCCCCEEEEeCCCh--HHHHHHHHHHHcCCCEEEEECCCCCHHHH
Confidence            35666 99999999999  99999999887632    456789999999  99999999999999999999998753211


Q ss_pred             CCCCCCCCCCCccc---cccC---CCCcccccccCccccCcEEecChHHHH--HHHHHHHHh-----cCcEeccchhhHH
Q psy14801        226 QSLNDVPENQISYN---EVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF--LMARRLIKS-----EGLLVGGSSGTAM  292 (404)
Q Consensus       226 ~~~~~~~~~~~~~~---~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~--~~~~~l~~~-----~gi~~~~~tg~tl  292 (404)
                      ..+...........   ....   ....+ .......+.+++.+..+++..  .++.||+++     +.+++..|||+++
T Consensus       103 ~~~~~~GA~v~~~~~~~~~~~~~~~a~~l-~~~~~~~~~~~~~n~~~~~~~~~t~~~Ei~eq~~~~~d~iv~~vG~Gg~~  181 (296)
T PRK11761        103 AAMRAYGAELILVPKEQGMEGARDLALQM-QAEGEGKVLDQFANPDNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTI  181 (296)
T ss_pred             HHHHHcCCEEEEeCCCCChHHHHHHHHHH-HhccCCEecCCCCChhhHHHHhhchHHHHHHhcCCCCCEEEecCCcHHHH
Confidence            11111111100000   0000   00000 000011122333222222221  233444444     3488999999999


Q ss_pred             HHHHHHHHhcCCCCeEEEEecCCCCCcc----------ccccchhHHhhcCccCcHHHHHH-------------hccchh
Q psy14801        293 HVACQAAKSLRPDQRCVVILADGVRNYL----------TKFISDEWMIEKGFLDEAEELEE-------------MIHSGT  349 (404)
Q Consensus       293 ag~~~~lk~~~~~~~vv~v~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~-------------g~SsGa  349 (404)
                      +|+.+++|+..|+.+|++|+|.++....          ...+ +....|..+.++|+++..             +.|||+
T Consensus       182 ~Gi~~~lk~~~~~~kvigVep~~~~~i~g~~~~~~~~~~~~~-~~~~vd~~v~V~d~e~~~a~~~l~~~~gi~ve~ssga  260 (296)
T PRK11761        182 MGVSRYLKEQNPAVQIVGLQPEEGSSIPGIRRWPEEYLPKIF-DASRVDRVLDVSQQEAENTMRRLAREEGIFCGVSSGG  260 (296)
T ss_pred             HHHHHHHHHhCCCCEEEEEecCCCCcCcCCCCCCCCcCCccc-ChhhCCEEEEECHHHHHHHHHHHHHHhCceEchhHHH
Confidence            9999999999999999999997642211          1111 111233445677776655             349999


Q ss_pred             HHHHHHHHHHhcCCCCeEEEEEcCCCcchhhc-cCC
Q psy14801        350 AMHVACQAAKSLRPDQRCVVILADGVRNYLTK-FIS  384 (404)
Q Consensus       350 ~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~-~~~  384 (404)
                      +++++++++++. ++++||+|+||+|+||++| +|+
T Consensus       261 ~laaa~~~~~~~-~~~~vV~v~~d~g~ky~~~~~~~  295 (296)
T PRK11761        261 AVAAALRIAREN-PNAVIVAIICDRGDRYLSTGVFP  295 (296)
T ss_pred             HHHHHHHHHHHC-CCCeEEEEECCCCcccCChhccc
Confidence            999999998874 6789999999999999999 775

>PLN00011 cysteine synthase

Probab=99.87  E-value=7.3e-22  Score=189.00  Aligned_cols=238  Identities=17%  Similarity=0.177  Sum_probs=158.9

Q ss_pred             cEee-cCCCCCCChhhHHhhHHHHHHHHhCCC----cC-EEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc
Q psy14801        152 AVVL-DQFRNPNNPLSHYETTAEEILRDTGGK----VD-MIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP  225 (404)
Q Consensus       152 ~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~----~~-~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~  225 (404)
                      .+|+ +|+.||++|.|  +|.+..++.++.++    |+ ..||++++||  +|+++|+.++..|+++++|+|.+.+....
T Consensus        33 ~i~~K~E~~nPtGS~K--~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN--~g~alA~~a~~~G~~~~ivvp~~~~~~k~  108 (323)
T PLN00011         33 RIAAKLEMMEPCSSVK--DRIAYSMIKDAEDKGLITPGKSTLIEATAGN--TGIGLACIGAARGYKVILVMPSTMSLERR  108 (323)
T ss_pred             eEEEEecccCCccccc--hHHHHHHHHHHHHcCCCCCCCcEEEEeCCCh--HHHHHHHHHHHcCCeEEEEeCCCCCHHHH
Confidence            5666 99999999999  99999999887643    44 5678899999  99999999999999999999998753211


Q ss_pred             CCCCCCCCCCCc---cccccC---CCCcccccccCccccCcEEecChHHH--HHHHHHHHHhc-----CcEeccchhhHH
Q psy14801        226 QSLNDVPENQIS---YNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDT--FLMARRLIKSE-----GLLVGGSSGTAM  292 (404)
Q Consensus       226 ~~~~~~~~~~~~---~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~--~~~~~~l~~~~-----gi~~~~~tg~tl  292 (404)
                      ..+.........   .....+   ....+.....+..+++++.+..++++  ..++.||+++.     .+|+..|||+++
T Consensus       109 ~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t~~~EI~~q~~~~~D~iv~~vGtGGt~  188 (323)
T PLN00011        109 IILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWRDSAGKVDILVAGVGTGGTA  188 (323)
T ss_pred             HHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHH
Confidence            111111111000   000000   00000000011123344444445554  24567777764     389999999999


Q ss_pred             HHHHHHHHhcCCCCeEEEEecCCCCCc--------cccccch-----hH---HhhcCccCcHHHHHHh------------
Q psy14801        293 HVACQAAKSLRPDQRCVVILADGVRNY--------LTKFISD-----EW---MIEKGFLDEAEELEEM------------  344 (404)
Q Consensus       293 ag~~~~lk~~~~~~~vv~v~~~~~~~~--------~~~~~~~-----~~---~~~~~~~~~~~~~~~g------------  344 (404)
                      +|+.+++|+..|+.+|++|++.+...+        ....++.     .+   ..|..+.++|+++...            
T Consensus       189 aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~Gi~~  268 (323)
T PLN00011        189 TGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIGSGIIPFNLDLTIVDEIIQVTGEEAIETAKLLALKEGLLV  268 (323)
T ss_pred             HHHHHHHHhhCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCcccChhhCCeEEEECHHHHHHHHHHHHHhcCCeE
Confidence            999999999999999999999654221        1111111     11   1233345677666553            


Q ss_pred             -ccchhHHHHHHHHHHhc-CCCCeEEEEEcCCCcchhhccCCHHHHHH-cCC
Q psy14801        345 -IHSGTAMHVACQAAKSL-RPDQRCVVILADGVRNYLTKFISDEWMIE-KGF  393 (404)
Q Consensus       345 -~SsGa~~~~a~~~~~~~-~~~~~iv~i~~D~g~rYl~~~~~~~w~~~-~~~  393 (404)
                       .|||++++++++++++. .++++||+|+||+|.||+||.+.+.|+.+ .++
T Consensus       269 ~~ssga~laaa~~~~~~~~~~~~~vv~i~~d~G~ky~~~~~~~~~~~~~~~~  320 (323)
T PLN00011        269 GISSGAAAAAALKVAKRPENAGKLIVVIFPSGGERYLSTKLFESVRYEAENL  320 (323)
T ss_pred             cccHHHHHHHHHHHHHhccCCCCeEEEEECCCccccCChhhhHHHHHhhhcC
Confidence             39999999999998764 35789999999999999999666789987 454

>TIGR01139 cysK cysteine synthase A

Probab=99.83  E-value=5e-20  Score=174.86  Aligned_cols=226  Identities=18%  Similarity=0.218  Sum_probs=149.7

Q ss_pred             CcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC----cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc
Q psy14801        151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK----VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP  225 (404)
Q Consensus       151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~----~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~  225 (404)
                      ..+|+ +|+.||++|.|  +|.+..++..+.++    ++..|+++++||  +|.++|+.++..|+++++|+|++.+....
T Consensus        21 ~~i~~K~E~~nptGS~K--~R~a~~~l~~a~~~g~~~~g~~vv~aSsGN--~g~alA~~a~~~Gl~~~i~vp~~~~~~k~   96 (298)
T TIGR01139        21 ANVFVKLEGRNPSGSVK--DRIALNMIWDAEKRGLLKPGKTIVEPTSGN--TGIALAMVAAARGYKLILTMPETMSIERR   96 (298)
T ss_pred             ceEEEEEcccCCCCcch--HHHHHHHHHHHHHcCCCCCCCEEEEeCCCh--hHHHHHHHHHHcCCeEEEEeCCccCHHHH
Confidence            35666 89999999999  99999999887532    456789999999  99999999999999999999998743211


Q ss_pred             CCCCCCCCCCC---cccc-cc--CCCCcccccccC--ccccCcEEecChHHHH--HHHHHHHHhc-----CcEeccchhh
Q psy14801        226 QSLNDVPENQI---SYNE-VE--GIGYSFAATTLD--RNVIDQWGKCGDKDTF--LMARRLIKSE-----GLLVGGSSGT  290 (404)
Q Consensus       226 ~~~~~~~~~~~---~~~~-~~--~i~~~~~~~~~~--~~~~~~~~~v~d~e~~--~~~~~l~~~~-----gi~~~~~tg~  290 (404)
                      ..+........   .... ..  .....+ .....  ..+++++.+..++...  ..+.||++|.     .+++..|||+
T Consensus        97 ~~~~~~GA~v~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg  175 (298)
T TIGR01139        97 KLLKAYGAELVLTPGAEGMKGAIAKAEEI-AASTPNSYFMLQQFENPANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGG  175 (298)
T ss_pred             HHHHHcCCEEEEECCCCCHHHHHHHHHHH-HHhCCCcEEcccccCCcccHHHHHHHHHHHHHHHhCCCCCEEEEecchhH
Confidence            11111111100   0000 00  000000 00000  1123343333333332  2445665553     4888999999


Q ss_pred             HHHHHHHHHHhcCCCCeEEEEecCCCCCcc--------ccccch--------hHHhhcCccCcHHHHHHh----------
Q psy14801        291 AMHVACQAAKSLRPDQRCVVILADGVRNYL--------TKFISD--------EWMIEKGFLDEAEELEEM----------  344 (404)
Q Consensus       291 tlag~~~~lk~~~~~~~vv~v~~~~~~~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~g----------  344 (404)
                      +++|+.+.+++..++.+|++|+|.+...+.        ...++.        ....|..+.++|+++..+          
T Consensus       176 ~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi  255 (298)
T TIGR01139       176 TITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSDEEAIETARRLAAEEGI  255 (298)
T ss_pred             hHHHHHHHHHhcCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCCccChhhCCEEEEECHHHHHHHHHHHHHhcCc
Confidence            999999999999899999999997642211        111111        112334456777776653          


Q ss_pred             ---ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhc
Q psy14801        345 ---IHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK  381 (404)
Q Consensus       345 ---~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~  381 (404)
                         .|||+++++++++++++.++++||+|+||+|+||+++
T Consensus       256 ~~~pssga~laa~~~~~~~~~~~~~vv~v~~d~G~ky~~~  295 (298)
T TIGR01139       256 LVGISSGAAVAAALKLAKRPEPDKLIVVILPSTGERYLST  295 (298)
T ss_pred             eEcccHHHHHHHHHHHHHhcCCCCEEEEEECCCCccccCc
Confidence               3899999999999988777899999999999999998

This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.

>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]

Probab=99.81  E-value=1.6e-19  Score=162.32  Aligned_cols=292  Identities=18%  Similarity=0.228  Sum_probs=208.9

Q ss_pred             CCCCCCCeeecCCCCC--------CCCCeEEEEeCCCCC-CCChhhHHHHHHH-HHH----HHhCCCCC-----------
Q psy14801         19 TVPGKVPLLPQSKQGS--------ILLPTTDAKCEFMNP-TGSLKDRAAWRMI-EDA----ETAGVLKP-----------   73 (404)
Q Consensus        19 ~~~g~TPl~~~~~l~~--------~~g~~l~~K~E~~~p-tGS~K~R~a~~~l-~~a----~~~g~~~~-----------   73 (404)
                      .++-.+||++++....        .+..++|+|++++-| +||+|.|+..+-+ .+|    ++.|.+.-           
T Consensus        74 ~GiIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~  153 (443)
T COG3048          74 GGIIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEE  153 (443)
T ss_pred             CCeeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHH
Confidence            3556789999876533        233499999999999 8999999876544 333    45565442           


Q ss_pred             ------CCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHH
Q psy14801         74 ------GYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIAS  147 (404)
Q Consensus        74 ------~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~  147 (404)
                            ...|.+.|+||.|.++...++.+|+++++-|.......|.+++++.|.+|+....  +|..   +++.-++-++
T Consensus       154 f~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe~--DY~~---AVeeGRk~a~  228 (443)
T COG3048         154 FKDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYEQ--DYGV---AVEEGRKEAE  228 (443)
T ss_pred             HHHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEecc--hhhH---HHHHhhhhhc
Confidence                  2279999999999999999999999999999999999999999999999999875  4543   3555666677


Q ss_pred             hCCCcEeecCCCCCCChhhHHhhHHHHHHHHhCC--------CcCEEEEccCCChhHHHHHHHHHHhCC-CcEEEEEcCC
Q psy14801        148 QMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGG--------KVDMIVLGCGTGGTASGIGRKIKEKCP-SCKLVGADPF  218 (404)
Q Consensus       148 ~~~~~~~~~e~~np~~si~g~~~~a~ei~~q~~~--------~~~~vvv~~gsG~~~~Gi~la~~~~~~-~~~vi~V~p~  218 (404)
                      ..|..||++. .|...-.-||...|..+-.|+..        .|=.+.+|+|-||.-.|++.+++-.+. .+.+.-++|.
T Consensus       229 ~DP~c~FiDD-E~S~~LFLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPt  307 (443)
T COG3048         229 SDPNCFFIDD-ENSRTLFLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPT  307 (443)
T ss_pred             cCCceEEecc-cchhhhhhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCC
Confidence            7778888742 23333446888888888777753        266788999999988999999988764 4778889999


Q ss_pred             CCcccccC-------CCCCCCCCCCccccccCCCCcccc---cccCccccCcEEecChHHHHHHHHHHHHhcCcEeccch
Q psy14801        219 GSILAQPQ-------SLNDVPENQISYNEVEGIGYSFAA---TTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSS  288 (404)
Q Consensus       219 ~~~~~~~~-------~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~t  288 (404)
                      .++++.-.       .+....-.....+.++|++.....   ........+.+++++|...+.....+++.+|+..+||.
T Consensus       308 hsPcMlLGv~tGlHe~ISVqdiGidn~TaADGLAVgRpSgfVgr~me~lL~G~~TvdD~~ly~lL~~L~~~e~~rlEPSa  387 (443)
T COG3048         308 HSPCMLLGVYTGLHEQISVQDIGIDNLTAADGLAVGRPSGFVGRAMERLLDGYYTVDDQTLYDLLGWLAQEEGIRLEPSA  387 (443)
T ss_pred             CChHHHHhhhhccccceeeEeecccccccccceeecCccchHHHHHHHHhCCcEEechHHHHHHHHHHHHhcCcccCchh
Confidence            98764321       111111111112223343222211   12223467899999999999999999999999999998


Q ss_pred             hhHHHHHHHHHHh-------------cCCCCeEEEEecCCC
Q psy14801        289 GTAMHVACQAAKS-------------LRPDQRCVVILADGV  316 (404)
Q Consensus       289 g~tlag~~~~lk~-------------~~~~~~vv~v~~~~~  316 (404)
                      -+.++|..+..+.             .-.+..-+++.||++
T Consensus       388 lAgm~Gp~~~~~~~~g~~~~~~~~~~~~~natHlvWaTGG~  428 (443)
T COG3048         388 LAGMAGPQRVCASVEGYRYRHGFSAEQLNNATHLVWATGGG  428 (443)
T ss_pred             hhcccCcceeeechhHHHHHhhchhhhhcCeeEEEEecCCC
Confidence            8888887655431             112456677777764

>PRK06608 threonine dehydratase; Provisional

Probab=99.81  E-value=5.5e-20  Score=176.67  Aligned_cols=242  Identities=12%  Similarity=0.062  Sum_probs=156.2

Q ss_pred             HHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC--cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC
Q psy14801        143 HRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK--VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG  219 (404)
Q Consensus       143 ~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~--~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~  219 (404)
                      ..+.+..+..+|+ +|+.||.+|.|  +|.|..++.++.++  ....||++++||  +|+++|+.++..|+++++|+|.+
T Consensus        30 ~~l~~~~g~~l~~K~E~~nptGS~K--~R~a~~~v~~a~~~g~~~~~vv~~SsGN--~g~alA~~a~~~G~~~~vv~p~~  105 (338)
T PRK06608         30 ESLNEMLGHEIFFKVESLQKTGAFK--VRGVLNHLLELKEQGKLPDKIVAYSTGN--HGQAVAYASKLFGIKTRIYLPLN  105 (338)
T ss_pred             HhHHHHhCCEEEEEeCCCCCCCCcH--HHHHHHHHHHhhhhcCcCCeEEEECCCH--HHHHHHHHHHHcCCCEEEEECCC
Confidence            3444444446777 99999999999  99999999988743  224678889999  99999999999999999999998


Q ss_pred             CcccccCCCCCCCCCCCcc---ccccCCCCcccccccCccccCcEEecChHHHH-HHHHHHHHhc-----CcEeccchhh
Q psy14801        220 SILAQPQSLNDVPENQISY---NEVEGIGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSE-----GLLVGGSSGT  290 (404)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~-----gi~~~~~tg~  290 (404)
                      .+......+...+......   .........  .......+.+++.+....+.. .++.||+++.     .+++..|||+
T Consensus       106 ~~~~k~~~l~~~GA~V~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~~~D~vv~~vG~GG  183 (338)
T PRK06608        106 TSKVKQQAALYYGGEVILTNTRQEAEEKAKE--DEEQGFYYIHPSDSDSTIAGAGTLCYEALQQLGFSPDAIFASCGGGG  183 (338)
T ss_pred             CCHHHHHHHHhCCCEEEEECCHHHHHHHHHH--HHhCCCEEcCCCCCHHHhccHHHHHHHHHHhcCCCcCEEEEeechhH
Confidence            7532111111111110000   000000000  000011122332222111111 1244555544     3889999999


Q ss_pred             HHHHHHHHHHhcCCCCeEEEEecCCCCCc--------------cccccchh----------H----HhhcCccCcHHHHH
Q psy14801        291 AMHVACQAAKSLRPDQRCVVILADGVRNY--------------LTKFISDE----------W----MIEKGFLDEAEELE  342 (404)
Q Consensus       291 tlag~~~~lk~~~~~~~vv~v~~~~~~~~--------------~~~~~~~~----------~----~~~~~~~~~~~~~~  342 (404)
                      +++|+.+.+|+.+++.+|++|+|.+....              ....+.+.          |    ..|..+.++|+++.
T Consensus       184 t~~Gi~~~~k~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~d~~v~Vsd~e~~  263 (338)
T PRK06608        184 LISGTYLAKELISPTSLLIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLSVSARTFEYLKKLDDFYLVEEYEIY  263 (338)
T ss_pred             HHHHHHHHHHhcCCCCEEEEEeeCCChHHHHHHHcCCeEeCCCCCCCeecccCCCCCCHHHHHHHHhCCCEEEECHHHHH
Confidence            99999999999999999999999654210              00111100          1    12333557777766


Q ss_pred             H-------------hccchhHHHHHHHHHHhcCCCCeEEEEEcCCC--cchhhccCCHHHHHH
Q psy14801        343 E-------------MIHSGTAMHVACQAAKSLRPDQRCVVILADGV--RNYLTKFISDEWMIE  390 (404)
Q Consensus       343 ~-------------g~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g--~rYl~~~~~~~w~~~  390 (404)
                      .             +.|||++++++++++++..++++||+|+||++  .+|++++|+++||.+
T Consensus       264 ~a~~~l~~~~gi~vepssaa~laa~~~~~~~~~~~~~Vv~v~tgg~~d~~~~~~~~~~~~~~~  326 (338)
T PRK06608        264 YWTAWLTHLLKVICEPSSAINMVAVVNWLKTQSKPQKLLVILSGGNIDPILYNELWKEDYLTI  326 (338)
T ss_pred             HHHHHHHHHcCcEEchHHHHHHHHHHhhchhhcCCCeEEEEeCCCccCHHHHHHHHHHhhhcC
Confidence            5             34999999999999877667899999999977  899999999999954

>TIGR01136 cysKM cysteine synthases

Probab=99.80  E-value=2.8e-19  Score=169.75  Aligned_cols=227  Identities=20%  Similarity=0.222  Sum_probs=147.8

Q ss_pred             CcEee-cCCCCCCChhhHHhhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc
Q psy14801        151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP  225 (404)
Q Consensus       151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~  225 (404)
                      ..+|+ +|+.||.+|.|  +|.+..++..+.+    .++..|+++++||  .|+++|+.++..|+++++++|...+....
T Consensus        22 ~~i~~K~E~~~ptGS~K--~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN--~g~alA~~a~~~G~~~~i~vp~~~~~~k~   97 (299)
T TIGR01136        22 ARVLAKLEGRNPSGSVK--DRIALSMIEDAEKRGLLKPGDTIIEATSGN--TGIALAMVAAAKGYKLILTMPETMSLERR   97 (299)
T ss_pred             ceEEEEEcccCCCCCcc--HHHHHHHHHHHHHcCCCCCCCEEEEeCCCh--HHHHHHHHHHHcCCcEEEEECCCCCHHHH
Confidence            35666 89999999999  9999998887642    2456789999999  99999999999999999999998753211


Q ss_pred             CCCCCCCCCCCc---ccccc---CCCCcccccccCccccCcEEecChHHH--HHHHHHHHHhc-----CcEeccchhhHH
Q psy14801        226 QSLNDVPENQIS---YNEVE---GIGYSFAATTLDRNVIDQWGKCGDKDT--FLMARRLIKSE-----GLLVGGSSGTAM  292 (404)
Q Consensus       226 ~~~~~~~~~~~~---~~~~~---~i~~~~~~~~~~~~~~~~~~~v~d~e~--~~~~~~l~~~~-----gi~~~~~tg~tl  292 (404)
                      ..+.........   .....   .....+....-...+++++.+..++..  .....||+++.     .+++..|||+++
T Consensus        98 ~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~~vG~Gg~~  177 (299)
T TIGR01136        98 KLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTI  177 (299)
T ss_pred             HHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhcCCCCCEEEEcCchhHHH
Confidence            111111111000   00000   000000000000112233333333333  13455666654     388888999999


Q ss_pred             HHHHHHHHhcCCCCeEEEEecCCCCCcc--------ccccch--------hHHhhcCccCcHHHHHHh------------
Q psy14801        293 HVACQAAKSLRPDQRCVVILADGVRNYL--------TKFISD--------EWMIEKGFLDEAEELEEM------------  344 (404)
Q Consensus       293 ag~~~~lk~~~~~~~vv~v~~~~~~~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~g------------  344 (404)
                      +|+.+++++..++.+|++|+|.+...+.        ...+..        ....+..+.++|+++.++            
T Consensus       178 ~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~  257 (299)
T TIGR01136       178 TGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSDEDAIETARRLAREEGILV  257 (299)
T ss_pred             HHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCccCChhhCCEEEEECHHHHHHHHHHHHHHhCceE
Confidence            9999999998899999999997653321        111111        012234456777776553            


Q ss_pred             -ccchhHHHHHHHHHHhcC-CCCeEEEEEcCCCcchhhc
Q psy14801        345 -IHSGTAMHVACQAAKSLR-PDQRCVVILADGVRNYLTK  381 (404)
Q Consensus       345 -~SsGa~~~~a~~~~~~~~-~~~~iv~i~~D~g~rYl~~  381 (404)
                       .|||++++++++++++.. ++++||+|+||+|.||+++
T Consensus       258 e~ssaa~~a~~~~~~~~~~~~~~~vv~i~~d~g~ky~~~  296 (299)
T TIGR01136       258 GISSGAAVAAALKLAKRLENADKVIVAILPDTGERYLST  296 (299)
T ss_pred             cchHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccCc
Confidence             399999999999988753 4899999999999999998

This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.

>PRK06721 threonine synthase; Reviewed

Probab=99.79  E-value=3.1e-19  Score=172.80  Aligned_cols=247  Identities=13%  Similarity=0.079  Sum_probs=153.1

Q ss_pred             HHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC-cc
Q psy14801        145 IASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS-IL  222 (404)
Q Consensus       145 l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~-~~  222 (404)
                      +.+..+..+|+ +|+.||.+|.|  +|.|..++.++.++-...||+++|||  +|+++|+.++..|+++++|+|++. +.
T Consensus        37 l~~~~g~~i~~K~E~~nptGS~K--dR~a~~~i~~a~~~g~~~vV~aSsGN--~G~alA~~aa~~G~~~~vvvp~~~~~~  112 (352)
T PRK06721         37 ISKQLGIQLYGKYEGANPTGSFK--DRGMVMAVAKAKEEGSEAIICASTGN--TSASAAAYAARLGMKCIIVIPEGKIAH  112 (352)
T ss_pred             hHHHhCCeEEEEecCCCCccchH--HHHHHHHHHHHHHCCCCEEEEECCcH--HHHHHHHHHHHCCCcEEEEECCCCCCH
Confidence            34333334666 99999999999  99999999888754334677889999  999999999999999999999874 22


Q ss_pred             cccCCCCCCCCCCC---cc-----ccccCCC--Cccccccc-CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhH
Q psy14801        223 AQPQSLNDVPENQI---SY-----NEVEGIG--YSFAATTL-DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTA  291 (404)
Q Consensus       223 ~~~~~~~~~~~~~~---~~-----~~~~~i~--~~~~~~~~-~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~t  291 (404)
                      .....+....+...   ..     ..+..+.  ......+. +.... ..+.....|+++++..  .-+.||+..|||++
T Consensus       113 ~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~~n~~~~-~G~~t~~~Ei~eq~~~--~~D~ivv~vG~GG~  189 (352)
T PRK06721        113 GKLAQAVAYGAEIISIEGNFDDALKAVRNIAAEEPITLVNSVNPYRI-EGQKTAAFEICDQLQR--APDVLAIPVGNAGN  189 (352)
T ss_pred             HHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhCCceeccCCCchhh-hhhhhHHHHHHHHhCC--CCCEEEEeCCchHH
Confidence            11111111111100   00     0000000  00100011 11111 1123334444333321  12348999999999


Q ss_pred             HHH----HHHHHHhcC-CCCeEEEEecCCCCCcc-----------ccccc----hhH---------HhhcCccCcHHHHH
Q psy14801        292 MHV----ACQAAKSLR-PDQRCVVILADGVRNYL-----------TKFIS----DEW---------MIEKGFLDEAEELE  342 (404)
Q Consensus       292 lag----~~~~lk~~~-~~~~vv~v~~~~~~~~~-----------~~~~~----~~~---------~~~~~~~~~~~~~~  342 (404)
                      ++|    +.+++|+.. |+.+|+.|+|.+...+.           ...+.    ..|         ..+..+.++|+++.
T Consensus       190 l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~g~~~~~~~tia~~l~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~  269 (352)
T PRK06721        190 ITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKGHVIDEPETIATAIRIGNPASWSYAVEAAEQSHGEIDMVSDEEIL  269 (352)
T ss_pred             HHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhhCCcCCCCCceeeccccCCCCCHHHHHHHHHhcCCEEEEECHHHHH
Confidence            996    677788764 88999999997642110           00110    111         11233457777766


Q ss_pred             Hh-------------ccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchhhccCCHHHHHHcCCCCchh
Q psy14801        343 EM-------------IHSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAE  398 (404)
Q Consensus       343 ~g-------------~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl~~~~~~~w~~~~~~~~~~~  398 (404)
                      ++             .|+|++++++++++++  +.++++||+|+||+|.||+++++++.|....++.....
T Consensus       270 ~a~~~la~~eGi~vepssgaalaa~~~~~~~~~~~~~~~Vv~v~~g~g~k~~~~~~~~~~~~~~~~~~~~~  340 (352)
T PRK06721        270 HAYRLLAKSEGVFAEPGSNASLAGVMKHVQSGKIKKGETVVAVLTGNGLKDPDIAISSNTLDIASVSNNIE  340 (352)
T ss_pred             HHHHHHHHhcCcccCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCcCchHHHhhhccCCcccCCccHH
Confidence            53             3889999999998874  56789999999999999999999999976555533333

>KOG1481|consensus

Probab=99.77  E-value=3.8e-19  Score=158.08  Aligned_cols=168  Identities=13%  Similarity=0.134  Sum_probs=121.1

Q ss_pred             HHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC----cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcC
Q psy14801        143 HRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK----VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADP  217 (404)
Q Consensus       143 ~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~----~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p  217 (404)
                      +.|++..++.++. .||.||+||+|  ||+|+.|++.+++.    |+.+|+|.++|+  +||++|..+...||+++.++|
T Consensus        56 ~sLs~aTGcnIlaK~Ef~NPggS~K--DRvAl~iir~Aee~GkL~~gg~v~EGtaGs--TgIslA~v~~a~Gyk~~I~mP  131 (391)
T KOG1481|consen   56 NSLSNATGCNILAKAEFLNPGGSVK--DRVALYIIRTAEEKGKLVRGGTVVEGTAGS--TGISLAHVARALGYKCHIYMP  131 (391)
T ss_pred             eccccccccchhhhhhccCCCCChh--hhhHHHHHHHHHHcCCcccCceEEecCCCc--cchhHHHhhhhcCcceEEECC
Confidence            4455666667776 89999999999  99999999999853    789999999999  999999999999999999999


Q ss_pred             CCCccc-------ccCCCCCCCCCCCccc---------ccc-----CCC-Cccccccc-CccccCcEEecChHHHHHHHH
Q psy14801        218 FGSILA-------QPQSLNDVPENQISYN---------EVE-----GIG-YSFAATTL-DRNVIDQWGKCGDKDTFLMAR  274 (404)
Q Consensus       218 ~~~~~~-------~~~~~~~~~~~~~~~~---------~~~-----~i~-~~~~~~~~-~~~~~~~~~~v~d~e~~~~~~  274 (404)
                      +..+..       ........+..+....         ...     +.+ ..+..+|+ +..++..||+.+.||||.+.+
T Consensus       132 ddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHyetTGPEIw~Qtk  211 (391)
T KOG1481|consen  132 DDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHYETTGPEIWHQTK  211 (391)
T ss_pred             ChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHhcCcCcHHHHhhc
Confidence            876422       1122221111110000         000     011 13445666 345556778888888887765


Q ss_pred             HHHHhcCcEeccchhhHHHHHHHHHHhcCCC-CeEEEEecCCC
Q psy14801        275 RLIKSEGLLVGGSSGTAMHVACQAAKSLRPD-QRCVVILADGV  316 (404)
Q Consensus       275 ~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~-~~vv~v~~~~~  316 (404)
                      .  ..++|+++.+||||++|+.++||+.++. ..+++.+|-++
T Consensus       212 G--niDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGS  252 (391)
T KOG1481|consen  212 G--NIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGS  252 (391)
T ss_pred             C--CcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCC
Confidence            3  3467999999999999999999998776 67777777554

>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase

Probab=99.76  E-value=6e-18  Score=160.12  Aligned_cols=228  Identities=19%  Similarity=0.215  Sum_probs=148.2

Q ss_pred             CCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC----cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccc
Q psy14801        149 MKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK----VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILA  223 (404)
Q Consensus       149 ~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~----~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~  223 (404)
                      .+..+|+ +|+.||.+|.|  +|.+..++.++..+    ++..|+++++||  .|.++|+.++..|+++++++|.+.+..
T Consensus        15 ~g~~i~~K~E~~~ptgS~K--~R~a~~~l~~a~~~g~~~~~~~vv~~SsGN--~g~alA~~a~~~G~~~~i~vp~~~~~~   90 (291)
T cd01561          15 TGAEIYAKLEFFNPGGSVK--DRIALYMIEDAEKRGLLKPGTTIIEPTSGN--TGIGLAMVAAAKGYRFIIVMPETMSEE   90 (291)
T ss_pred             CCCeEEEEecccCCCCcch--HHHHHHHHHHHHHcCCCCCCCEEEEeCCCh--HHHHHHHHHHHcCCeEEEEECCCCCHH
Confidence            3345666 89999999999  99999888877532    346688899999  999999999999999999999986432


Q ss_pred             ccCCCCCCCCCCC---ccc-----cccCCCCcccccccCccccCcEEecChHHHH--HHHHHHHHhc-----CcEeccch
Q psy14801        224 QPQSLNDVPENQI---SYN-----EVEGIGYSFAATTLDRNVIDQWGKCGDKDTF--LMARRLIKSE-----GLLVGGSS  288 (404)
Q Consensus       224 ~~~~~~~~~~~~~---~~~-----~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~--~~~~~l~~~~-----gi~~~~~t  288 (404)
                      ....+........   ...     ........+....-...+++++.+..+.+.+  ..+.||.++.     .+++..||
T Consensus        91 k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~~~d~vv~~~G~  170 (291)
T cd01561          91 KRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDGKVDAFVAGVGT  170 (291)
T ss_pred             HHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCCCCCEEEEeCCh
Confidence            1111111111000   000     0000000000000011233333344444443  3346666654     38889999


Q ss_pred             hhHHHHHHHHHHhcCCCCeEEEEecCCCCCc--------cccccchh--------HHhhcCccCcHHHHHHh--------
Q psy14801        289 GTAMHVACQAAKSLRPDQRCVVILADGVRNY--------LTKFISDE--------WMIEKGFLDEAEELEEM--------  344 (404)
Q Consensus       289 g~tlag~~~~lk~~~~~~~vv~v~~~~~~~~--------~~~~~~~~--------~~~~~~~~~~~~~~~~g--------  344 (404)
                      |++++|+.+.+++..++.+|++|++.+...+        ..++++..        ...+..+.++|+++..+        
T Consensus       171 Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~  250 (291)
T cd01561         171 GGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEAFAMARRLAREE  250 (291)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCCCCCCCcCCCCCCCCCCCccCchhCceeEEECHHHHHHHHHHHHHHh
Confidence            9999999999999989999999999764322        01111111        02234455677666553        


Q ss_pred             -----ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhh
Q psy14801        345 -----IHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT  380 (404)
Q Consensus       345 -----~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~  380 (404)
                           .|||++++++++++++++++++||+|+||+|.||+|
T Consensus       251 gi~~epssa~a~a~~~~~~~~~~~~~~vv~v~~~~g~ky~~  291 (291)
T cd01561         251 GLLVGGSSGAAVAAALKLAKRLGPGKTIVTILPDSGERYLS  291 (291)
T ss_pred             CeeEcccHHHHHHHHHHHHHhcCCCCeEEEEECCCccccCC
Confidence                 399999999999998876789999999999999986

CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.

>PRK06352 threonine synthase; Validated

Probab=99.75  E-value=5e-18  Score=164.21  Aligned_cols=227  Identities=10%  Similarity=0.031  Sum_probs=143.5

Q ss_pred             HHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC-c
Q psy14801        144 RIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS-I  221 (404)
Q Consensus       144 ~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~-~  221 (404)
                      ++.+..+..+|+ +|+.||++|.|  +|.|..++.++.++-...||++++||  +|+++|+.++..|+++++|+|++. +
T Consensus        36 ~l~~~~g~~l~~K~E~~nptGS~K--dR~a~~~i~~a~~~g~~~vV~aSsGN--~G~AlA~~aa~~G~~~~ivvp~~~~~  111 (351)
T PRK06352         36 NLSKELGVTLYGKYEGLNPTGSFK--DRGMVMAVAKAKEEGAEAVICASTGN--TSAAAAAYATRAGLKAYIVIPEGKVA  111 (351)
T ss_pred             hhHHHhCCeEEEEecCCCCccChH--HHHHHHHHHHHHHCCCCEEEEECCcH--HHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence            344433345666 99999999999  99999999887644334688889999  999999999999999999999874 3


Q ss_pred             ccccCCCCCCCCCCC---cc-----ccccCCC--CcccccccCccccCcEEecChHHHH-HHHHHHHHhc-----CcEec
Q psy14801        222 LAQPQSLNDVPENQI---SY-----NEVEGIG--YSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSE-----GLLVG  285 (404)
Q Consensus       222 ~~~~~~~~~~~~~~~---~~-----~~~~~i~--~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~-----gi~~~  285 (404)
                      ......+........   ..     ..+..+.  ......        +.++....+.+ ..+.|+++|.     .+++.
T Consensus       112 ~~k~~~~~a~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~n~~~~~G~~t~~~EI~~Q~~~~~D~vvv~  183 (351)
T PRK06352        112 LGKLAQAVMYGADIISIQGNFDEALKSVRELAETEAVTLV--------NSVNPYRLEGQKTAAFEICEQLGSAPDVLAIP  183 (351)
T ss_pred             HHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHhcCcccc--------cCCCccceeeHHHHHHHHHHHcCCCCCEEEEE
Confidence            211111111111100   00     0000000  000000        01111111111 2344555444     48899


Q ss_pred             cchhhHHHHHHHHHHhcCCC-----CeEEEEecCCCCCc-------cc----ccc--c--hhH-----Hhhc----CccC
Q psy14801        286 GSSGTAMHVACQAAKSLRPD-----QRCVVILADGVRNY-------LT----KFI--S--DEW-----MIEK----GFLD  336 (404)
Q Consensus       286 ~~tg~tlag~~~~lk~~~~~-----~~vv~v~~~~~~~~-------~~----~~~--~--~~~-----~~~~----~~~~  336 (404)
                      .|||++++|+.+.+|+..++     .+|+.|+|.+....       ..    ..+  .  ..|     ..+.    .+.+
T Consensus       184 vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g~~~~~~~~ia~~l~~~~~~~~~~~~~~~d~~~g~~~~V  263 (351)
T PRK06352        184 VGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGKPIDNPETIATAIRIGNPASWGLAEAARDESGGYIHSV  263 (351)
T ss_pred             CCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhCCCcCCCCcceeEEEeCCCCcHHHHHHHHHHhCCEEEEE
Confidence            99999999999999987766     79999999664211       01    110  0  111     1121    3557


Q ss_pred             cHHHHHHh-------------ccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchhhcc
Q psy14801        337 EAEELEEM-------------IHSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLTKF  382 (404)
Q Consensus       337 ~~~~~~~g-------------~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl~~~  382 (404)
                      +|+++..+             .|||++++++++++++  +.++++||+|+||+|.||++++
T Consensus       264 ~d~e~~~a~r~la~~eGi~vepssaaalAa~~~~~~~~~~~~~~~Vv~v~tg~G~~~~~~~  324 (351)
T PRK06352        264 TDDEIVNAYKKIAAQDGVFIEPGSAASLAGVIQHVANGTIKKGETVVCVFTGNGLKDPDTA  324 (351)
T ss_pred             CHHHHHHHHHHHHhhcCceEchhHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCCcCChHHH
Confidence            77766553             3899999999998874  4568899999999999999975

>PRK07334 threonine dehydratase; Provisional

Probab=99.73  E-value=7.9e-18  Score=166.00  Aligned_cols=243  Identities=11%  Similarity=0.074  Sum_probs=154.4

Q ss_pred             HHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801        143 HRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS  220 (404)
Q Consensus       143 ~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~  220 (404)
                      .++.+..+..+|+ +|+.||++|.|  +|.|..++.++..+ ...-||++++||  +|+++|+.++..|+++++|+|.+.
T Consensus        30 ~~l~~~~g~~l~~K~E~~nptGS~K--dR~a~~~i~~~~~~~~~~~vv~aSsGN--~g~alA~~a~~~G~~~~iv~p~~~  105 (403)
T PRK07334         30 RTLSQITGAEVWLKFENLQFTASFK--ERGALNKLLLLTEEERARGVIAMSAGN--HAQGVAYHAQRLGIPATIVMPRFT  105 (403)
T ss_pred             HHHHHhhCCeEEEEeccCCCCCCch--HHHHHHHHHhcCHHHhCCcEEEECCcH--HHHHHHHHHHHcCCCEEEEECCCC
Confidence            3444443445776 99999999999  99999998876522 222378889999  999999999999999999999987


Q ss_pred             cccccCCCCCCCCCCCcc-ccccC---CCCcccccccCccccCcEEecChHHHH-HHHHHHHHhc----CcEeccchhhH
Q psy14801        221 ILAQPQSLNDVPENQISY-NEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSE----GLLVGGSSGTA  291 (404)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~-~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~----gi~~~~~tg~t  291 (404)
                      +......+.......... .....   ..... .......+.+++.+....+-+ ..+.|++++.    .+|+..|||++
T Consensus       106 ~~~k~~~~~~~GA~v~~~~~~~~~~~~~a~~l-~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~d~vv~~vG~GG~  184 (403)
T PRK07334        106 PTVKVERTRGFGAEVVLHGETLDEARAHAREL-AEEEGLTFVHPYDDPAVIAGQGTVALEMLEDAPDLDTLVVPIGGGGL  184 (403)
T ss_pred             CHHHHHHHHHcCCEEEEECcCHHHHHHHHHHH-HHhcCCEecCCCCCHHHHHhHHHHHHHHHhcCCCCCEEEEecCHHHH
Confidence            532211111111111000 00000   00000 000011223333333333333 3456676664    48899999999


Q ss_pred             HHHHHHHHHhcCCCCeEEEEecCCCCCcc---------------ccccc--------hhH---HhhcCccCcHHHHHHhc
Q psy14801        292 MHVACQAAKSLRPDQRCVVILADGVRNYL---------------TKFIS--------DEW---MIEKGFLDEAEELEEMI  345 (404)
Q Consensus       292 lag~~~~lk~~~~~~~vv~v~~~~~~~~~---------------~~~~~--------~~~---~~~~~~~~~~~~~~~g~  345 (404)
                      ++|+.+.+|+.+|+.+|++|+|.+...+.               ..++.        ..+   ..|..+.++|+++..++
T Consensus       185 ~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~  264 (403)
T PRK07334        185 ISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVALPCGGSTIAEGIAVKQPGQLTLEIVRRLVDDILLVSEADIEQAV  264 (403)
T ss_pred             HHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCCCccCCCCCccceecCCCccHHHHHHHHHhCCeEEEECHHHHHHHH
Confidence            99999999999999999999997642221               11111        011   23344567777776632


Q ss_pred             -------------cchhHHHHHHHHHHhcCCCCeEEEEEcCCC--cchhhccCCHHHHHHc
Q psy14801        346 -------------HSGTAMHVACQAAKSLRPDQRCVVILADGV--RNYLTKFISDEWMIEK  391 (404)
Q Consensus       346 -------------SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g--~rYl~~~~~~~w~~~~  391 (404)
                                   |+|++++++++++++ .++++||+|+||+.  .+++.++++..|+.+.
T Consensus       265 ~~l~~~~gi~v~~s~a~~~aa~~~~~~~-~~~~~vv~i~~ggn~d~~~l~~il~~~l~~~~  324 (403)
T PRK07334        265 SLLLEIEKTVVEGAGAAGLAALLAYPER-FRGRKVGLVLSGGNIDTRLLANVLLRGLVRAG  324 (403)
T ss_pred             HHHHHhcCCEEechHHHHHHHHHhCchh-cCCCeEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence                         777777777776665 46889999999975  7788888888877544

>PRK08638 threonine dehydratase; Validated

Probab=99.71  E-value=4e-17  Score=156.58  Aligned_cols=231  Identities=13%  Similarity=0.109  Sum_probs=146.5

Q ss_pred             HHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCc
Q psy14801        144 RIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI  221 (404)
Q Consensus       144 ~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~  221 (404)
                      ++.+..+..+|+ +|+.||++|.|  +|.+..++..+.. .....|+++||||  +|+++|+.++..|+++++|+|++.+
T Consensus        35 ~l~~~~g~~i~~K~E~~nptGS~K--dR~a~~~i~~~~~~~~~~~vv~~SsGN--~g~alA~~aa~~G~~~~iv~p~~~~  110 (333)
T PRK08638         35 YLSERCKGEIFLKLENMQRTGSFK--IRGAFNKLSSLTDAEKRKGVVACSAGN--HAQGVALSCALLGIDGKVVMPKGAP  110 (333)
T ss_pred             hhHHhhCCeEEEEeccCCccCCcH--HHHHHHHHHhccHHhcCCeEEEeCCcH--HHHHHHHHHHHcCCCEEEEeCCCCc
Confidence            344444456777 99999999999  9999999987653 1223678899999  9999999999999999999999875


Q ss_pred             ccccCCCCCCCCCCC---cc---------ccccCCCCcccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchh
Q psy14801        222 LAQPQSLNDVPENQI---SY---------NEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSG  289 (404)
Q Consensus       222 ~~~~~~~~~~~~~~~---~~---------~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg  289 (404)
                      ......+........   ..         ......+ .++..++++...-..+.....|+++++.   +-+.+|+..|||
T Consensus       111 ~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~a~~~g-~~~~~~~~~~~~~~g~~t~a~Ei~~q~~---~~d~vv~~vG~G  186 (333)
T PRK08638        111 KSKVAATCGYGAEVVLHGDNFNDTIAKVEEIVEEEG-RTFIPPYDDPKVIAGQGTIGLEILEDLW---DVDTVIVPIGGG  186 (333)
T ss_pred             HHHHHHHHHcCCEEEEECcCHHHHHHHHHHHHHhcC-CEEcCcCCCcchhccccHHHHHHHhhcC---CCCEEEEEeChh
Confidence            322111111111100   00         0000111 1222222211112223344445544332   235699999999


Q ss_pred             hHHHHHHHHHHhcCCCCeEEEEecCCCCC------------c-cccccchh--------H-------HhhcCccCcHHHH
Q psy14801        290 TAMHVACQAAKSLRPDQRCVVILADGVRN------------Y-LTKFISDE--------W-------MIEKGFLDEAEEL  341 (404)
Q Consensus       290 ~tlag~~~~lk~~~~~~~vv~v~~~~~~~------------~-~~~~~~~~--------~-------~~~~~~~~~~~~~  341 (404)
                      ++++|+.+++|+.+|+.+|++|+|.+...            . ....+.+.        +       ..|..+.++|+++
T Consensus       187 g~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~~p~~~~~~~~~~~~d~~v~Vsd~ea  266 (333)
T PRK08638        187 GLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEI  266 (333)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeeccccCCCccHHHHHHHHHhCCeEEEECHHHH
Confidence            99999999999999999999999976311            0 11111111        1       2334456777777


Q ss_pred             HHhc------------cchhHHHHHHHHHH--hcCCCCeEEEEEcCCCcchhhccC
Q psy14801        342 EEMI------------HSGTAMHVACQAAK--SLRPDQRCVVILADGVRNYLTKFI  383 (404)
Q Consensus       342 ~~g~------------SsGa~~~~a~~~~~--~~~~~~~iv~i~~D~g~rYl~~~~  383 (404)
                      ..++            +||++..|+++..+  ...++++||+|+|+ |..+++++.
T Consensus       267 ~~a~~~l~~~~gi~~e~sgA~~~Aa~~~~~~~~~~~~~~vv~v~~G-gn~~~~~~~  321 (333)
T PRK08638        267 RNAMKDLIQRNKVVTEGAGALATAALLSGKLDQYIQNKKVVAIISG-GNVDLSRVS  321 (333)
T ss_pred             HHHHHHHHHHcCCeechhHHHHHHHHHhCCcccccCCCcEEEEECC-CCCCHHHHH
Confidence            6643            78888888888643  22367899999995 888988754

>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions

Probab=99.70  E-value=2.2e-16  Score=153.69  Aligned_cols=235  Identities=12%  Similarity=0.036  Sum_probs=142.3

Q ss_pred             HHHHHhC-CCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC
Q psy14801        143 HRIASQM-KNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG  219 (404)
Q Consensus       143 ~~l~~~~-~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~  219 (404)
                      .++.+.. +..+|+ +|+.||.+|.|  +|.+..++..+.+ ..+.+|+++||||  +|+++|+.++..|+++++|+|..
T Consensus        41 ~~l~~~~g~~~l~~K~E~~nptgS~K--~R~a~~~~~~a~~~g~~~vv~~~ssGN--~g~alA~~a~~~G~~~~ivvp~~  116 (365)
T cd06446          41 KRLSEYLGGAKIYLKREDLNHTGAHK--INNALGQALLAKRMGKKRVIAETGAGQ--HGVATATACALFGLECEIYMGAV  116 (365)
T ss_pred             HHHHHhhCCceEEEEeccCCCccchh--HHHHHHHHHHHHHcCCCeEEEecCchH--HHHHHHHHHHHhCCCeEEEEcCC
Confidence            3444433 345676 99999999988  9999888875543 3577888889999  99999999999999999999976


Q ss_pred             Cccccc---CCCCCCCCCCCccc-------c---------ccCCCC-ccccccc-----CccccCcEEecChHHHHHHHH
Q psy14801        220 SILAQP---QSLNDVPENQISYN-------E---------VEGIGY-SFAATTL-----DRNVIDQWGKCGDKDTFLMAR  274 (404)
Q Consensus       220 ~~~~~~---~~~~~~~~~~~~~~-------~---------~~~i~~-~~~~~~~-----~~~~~~~~~~v~d~e~~~~~~  274 (404)
                      .+....   ..+....+......       .         ...... .+...++     ...++..++.....|+++++.
T Consensus       117 ~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ag~~t~~~EI~~Q~~  196 (365)
T cd06446         117 DVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQIL  196 (365)
T ss_pred             ccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCchHHHHHhhhHHHHHHHHHHH
Confidence            421000   00111111100000       0         000000 0000000     000111122222344444433


Q ss_pred             HHH--HhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCccc----------------------c--------
Q psy14801        275 RLI--KSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT----------------------K--------  322 (404)
Q Consensus       275 ~l~--~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~----------------------~--------  322 (404)
                      +..  .-+.+|++.|||++++|+.+.+++ .++.+|++|++.+...+..                      .        
T Consensus       197 ~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  275 (365)
T cd06446         197 EKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGGTAGVLHGLKMYTLQDEDGQIVP  275 (365)
T ss_pred             HhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCccccccceeeccCCCcceecchhhhccccccCCCCC
Confidence            211  125699999999999999986665 3588999999965432210                      0        


Q ss_pred             -----------ccchh-H-H----hhcCccCcHHHHHHh-------------ccchhHHHHHHHHHHhcCCCCeEEEEEc
Q psy14801        323 -----------FISDE-W-M----IEKGFLDEAEELEEM-------------IHSGTAMHVACQAAKSLRPDQRCVVILA  372 (404)
Q Consensus       323 -----------~~~~~-~-~----~~~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~~  372 (404)
                                 .+... | +    .+..+.++|+++.++             .|||++++++++++++++++++||+|+|
T Consensus       276 ~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~r~la~~eGi~~epssgaalAa~~~~~~~~~~~~~Vv~i~~  355 (365)
T cd06446         276 PHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFKLLARTEGIIPALESSHAIAYAIKLAKKLGKEKVIVVNLS  355 (365)
T ss_pred             cccccccccCCCCCHHHHHHHHhCCceEEEeChHHHHHHHHHHHHhcCceeCccchHHHHHHHHHHHhcCCCCeEEEEeC
Confidence                       00000 0 1    123345677666553             3999999999999988767889999999


Q ss_pred             CCCcchhhcc
Q psy14801        373 DGVRNYLTKF  382 (404)
Q Consensus       373 D~g~rYl~~~  382 (404)
                      |+|.||++|+
T Consensus       356 g~G~k~~~~~  365 (365)
T cd06446         356 GRGDKDLQTV  365 (365)
T ss_pred             CCCccccccC
Confidence            9999999874

In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.

>PRK07409 threonine synthase; Validated

Probab=99.70  E-value=1.1e-16  Score=155.40  Aligned_cols=233  Identities=12%  Similarity=0.012  Sum_probs=143.1

Q ss_pred             HHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC-cc
Q psy14801        145 IASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS-IL  222 (404)
Q Consensus       145 l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~-~~  222 (404)
                      +.+..+..+|+ .|+.||++|.|  +|.+..++..+.++-...||+++|||  +|+++|+.++..|+++++|+|.+. +.
T Consensus        40 l~~~~g~~i~~K~E~~nptGSfK--dR~a~~~l~~a~~~g~~~iv~aSsGN--~g~alA~~a~~~G~~~~ivvP~~~~~~  115 (353)
T PRK07409         40 LSELLGVEVYVKYEGLNPTGSFK--DRGMTMAVTKAKEEGAKAVICASTGN--TSASAAAYAARAGLKAFVLIPEGKIAL  115 (353)
T ss_pred             hHHHhCCeEEEEecCCCCccchH--HHHHHHHHHHHHHCCCCEEEEECCcH--HHHHHHHHHHHcCCCEEEEEcCCCCch
Confidence            33333345666 99999999999  99999999888643234688889999  899999999999999999999873 32


Q ss_pred             cccCCCCCCCCCCC--ccc--cccCCCCcccccccCccccCcEEecChHHHH-HHHHHHHHhc-----CcEeccchhhHH
Q psy14801        223 AQPQSLNDVPENQI--SYN--EVEGIGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSE-----GLLVGGSSGTAM  292 (404)
Q Consensus       223 ~~~~~~~~~~~~~~--~~~--~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~-----gi~~~~~tg~tl  292 (404)
                      .....+........  ...  ........+. ......+.+ ..+..+.+.+ .++.||+++.     .|++..|||+++
T Consensus       116 ~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~l~-~~~~~~~~~-~~n~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~GG~~  193 (353)
T PRK07409        116 GKLAQAVMYGAEIIQIDGNFDDALEIVRELA-EKYPVTLVN-SVNPYRIEGQKTAAFEIVDALGDAPDYHCIPVGNAGNI  193 (353)
T ss_pred             hhHHHHHhcCCEEEEECCCHHHHHHHHHHHH-HhcCceecC-CCCchhhhhHHHHHHHHHHHhCCCCCEEEEeCCChHHH
Confidence            11111111111000  000  0000000000 000000111 1122222222 2345565554     388999999999


Q ss_pred             HHHHHHHHhcC------CCCeEEEEecCCCCCc-----------cccccc----hh----H--Hhh---cCccCcHHHHH
Q psy14801        293 HVACQAAKSLR------PDQRCVVILADGVRNY-----------LTKFIS----DE----W--MIE---KGFLDEAEELE  342 (404)
Q Consensus       293 ag~~~~lk~~~------~~~~vv~v~~~~~~~~-----------~~~~~~----~~----~--~~~---~~~~~~~~~~~  342 (404)
                      +|+.+.+++..      +..+++.|+|.+...+           +...+.    ..    +  +.+   ..+.++|+++.
T Consensus       194 ~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g~~~~~~~ti~~~l~~~~~~~~~~~~~~~~~~~~~~v~Vsd~e~~  273 (353)
T PRK07409        194 TAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRGEPVKNPETIATAIRIGNPASWDKAVAARDESGGLIDAVTDEEIL  273 (353)
T ss_pred             HHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhCCcCCCCcceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHH
Confidence            99999888753      2478999998653211           111110    11    1  111   23567777766


Q ss_pred             Hh-------------ccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchhhccC
Q psy14801        343 EM-------------IHSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLTKFI  383 (404)
Q Consensus       343 ~g-------------~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl~~~~  383 (404)
                      ++             .|||++++++++++++  +.++++||+|+||+|.||++++.
T Consensus       274 ~a~~~l~~~egi~v~pssa~alaa~~~~~~~~~~~~~~~VV~i~tg~g~k~~~~~~  329 (353)
T PRK07409        274 EAYRLLARKEGVFCEPASAASVAGLLKAIRAGKIPEGSTVVCTLTGNGLKDPDTAI  329 (353)
T ss_pred             HHHHHHHHhCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEecCccccchHHHH
Confidence            53             3899999999998876  66789999999999999999864

>PRK08198 threonine dehydratase; Provisional

Probab=99.69  E-value=1.2e-16  Score=158.02  Aligned_cols=245  Identities=13%  Similarity=0.124  Sum_probs=148.4

Q ss_pred             HHHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC
Q psy14801        142 AHRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG  219 (404)
Q Consensus       142 a~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~  219 (404)
                      +.++++..+..+|+ +|+.||++|.|  +|.|..++.++.+ .....||++|+||  +|+++|+.++..|+++++|+|.+
T Consensus        28 ~~~ls~~~g~~i~~K~E~~nptGS~K--~R~a~~~i~~~~~~~~~~~vv~aSsGN--~g~alA~~a~~~G~~~~iv~p~~  103 (404)
T PRK08198         28 SRTLSELTGAEVYLKCENLQRTGSFK--IRGAYNKIASLSEEERARGVVAASAGN--HAQGVAYAASLLGIKATIVMPET  103 (404)
T ss_pred             hhhHHHHhCCEEEEEECCCCCCCCCH--HHHHHHHHHhccHhhcCCEEEEECCCH--HHHHHHHHHHHcCCCEEEEECCC
Confidence            33455444456777 99999999999  9999999988763 2344678889999  99999999999999999999998


Q ss_pred             CcccccCCCCCCCCCCCc-cccccC---CCCcccccccCccccCcEEecChHHHH-HHHHHHHHhc----CcEeccchhh
Q psy14801        220 SILAQPQSLNDVPENQIS-YNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSE----GLLVGGSSGT  290 (404)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~-~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~----gi~~~~~tg~  290 (404)
                      .+......+....+.... ......   ....+. ......+.+++.+....+-+ .++.||+++.    .+|+..|||+
T Consensus       104 ~~~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~~~-~~~g~~~~~~~~~~~~~~g~~t~a~EI~~q~~~~d~vv~~vG~GG  182 (404)
T PRK08198        104 APLSKVKATRSYGAEVVLHGDVYDEALAKAQELA-EETGATFVHPFDDPDVIAGQGTIGLEILEDLPDVDTVVVPIGGGG  182 (404)
T ss_pred             CCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHH-HhcCCEecCCCCCccHHHHHHHHHHHHHHhCCCCCEEEEEeCHhH
Confidence            753221111111111000 000000   000000 00111233333333333333 3466777764    3889999999


Q ss_pred             HHHHHHHHHHhcCCCCeEEEEecCCCCCcc-------------ccccchh----------H-----HhhcCccCcHHHHH
Q psy14801        291 AMHVACQAAKSLRPDQRCVVILADGVRNYL-------------TKFISDE----------W-----MIEKGFLDEAEELE  342 (404)
Q Consensus       291 tlag~~~~lk~~~~~~~vv~v~~~~~~~~~-------------~~~~~~~----------~-----~~~~~~~~~~~~~~  342 (404)
                      +++|+.+++|+.+|+.+|++|+|.+...+.             ...+.+.          +     ..|..+.++++++.
T Consensus       183 ~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~~~~~~~~~~~~~d~~v~V~d~e~~  262 (404)
T PRK08198        183 LISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRPGDLTFEIIRELVDDVVTVSDEEIA  262 (404)
T ss_pred             HHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCCEecCCCCccccccccCCcCHHHHHHHHHhCCEEEEECHHHHH
Confidence            999999999999999999999996643210             0011111          1     22344567777665


Q ss_pred             Hhc-------------cchhHHHHHHHHHHhcCCCCeEEEEEcCCCc--chhhccCCHHHHHHcC
Q psy14801        343 EMI-------------HSGTAMHVACQAAKSLRPDQRCVVILADGVR--NYLTKFISDEWMIEKG  392 (404)
Q Consensus       343 ~g~-------------SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~--rYl~~~~~~~w~~~~~  392 (404)
                      .++             |+|++++++++. +.+.++++||+|+|++..  +++.++++.....+..
T Consensus       263 ~a~~~l~~~~g~~~e~sga~~lAal~~~-~~~~~~~~vv~vl~ggn~~~~~l~~ii~~gl~~~gr  326 (404)
T PRK08198        263 RAILLLLERAKLVVEGAGAVSVAALLSG-KLDVKGKKVVAVLSGGNIDVLLLSRVIERGLVAAGR  326 (404)
T ss_pred             HHHHHHHHhcCeEEehHHHHHHHHHHhc-hhhcCCCeEEEEECCCCCCHHHHHHHHHhhhhhcCC
Confidence            532             544555555544 455678999999998544  4555555554444333

>PLN02618 tryptophan synthase, beta chain

Probab=99.68  E-value=2.1e-16  Score=154.03  Aligned_cols=228  Identities=13%  Similarity=0.044  Sum_probs=141.8

Q ss_pred             CcEee-cCCCCCCChhhHHhhHHHHHHHHhC-CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc---
Q psy14801        151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTG-GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP---  225 (404)
Q Consensus       151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~-~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~---  225 (404)
                      ..+|+ +|+.||++|.|  +|.+...+..+. ..++.+|+++|+||  .|+++|+.++..|+++++++|+.......   
T Consensus        87 ~~IylK~E~lnptGS~K--~R~a~~~~l~A~~~g~~~vIaesgaGN--hG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv  162 (410)
T PLN02618         87 PEIYLKREDLNHTGAHK--INNAVAQALLAKRLGKKRIIAETGAGQ--HGVATATVCARFGLECIVYMGAQDMERQALNV  162 (410)
T ss_pred             CEEEEEeCCCCCccchH--HHHHHHHHHHHHHcCCCEEEEEcCcHH--HHHHHHHHHHHcCCcEEEEEcCCchhhhhhhH
Confidence            45777 99999999988  886665544333 23688999999999  99999999999999999999986421000   


Q ss_pred             CCCCCCCCCCCcc-----cc-----------ccCCCC-ccccccc-----CccccCcEEecChHHHHHHHHHHH--HhcC
Q psy14801        226 QSLNDVPENQISY-----NE-----------VEGIGY-SFAATTL-----DRNVIDQWGKCGDKDTFLMARRLI--KSEG  281 (404)
Q Consensus       226 ~~~~~~~~~~~~~-----~~-----------~~~i~~-~~~~~~~-----~~~~~~~~~~v~d~e~~~~~~~l~--~~~g  281 (404)
                      ..+....+.....     ..           ...+.. .++..+.     ...++.++.++...|+.+++.+-.  .-+.
T Consensus       163 ~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~  242 (410)
T PLN02618        163 FRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDV  242 (410)
T ss_pred             HHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCCHHHHHHhhHHHHHHHHHHHHHHhCCCCCE
Confidence            0011111110000     00           000000 0000000     001112333334445543332111  1234


Q ss_pred             cEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCC----------------------cc--c----------------
Q psy14801        282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRN----------------------YL--T----------------  321 (404)
Q Consensus       282 i~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~----------------------~~--~----------------  321 (404)
                      +|++.|||++++|+.+.+++ +++.+++.|++.+...                      |+  +                
T Consensus       243 VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~~~~~~~~~a~l~~g~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~  321 (410)
T PLN02618        243 LVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDEDGQIIEPHSISAGLD  321 (410)
T ss_pred             EEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCCcccccccccchhcCCcceeccccccccccccCCCCCCcchhhhhc
Confidence            99999999999999988865 6889999999976310                      00  0                


Q ss_pred             -cccch--hHHhh----cCccCcHHHHHHh-------------ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhc
Q psy14801        322 -KFISD--EWMIE----KGFLDEAEELEEM-------------IHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK  381 (404)
Q Consensus       322 -~~~~~--~~~~~----~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~  381 (404)
                       +..+.  .++.+    ....++|+++..+             .|||++++++++++++++++++||++++|+|+||+++
T Consensus       322 ~pgvgp~~~~l~~~~~~~~v~VtD~Eal~a~~~La~~eGIi~~~sSa~a~a~a~~~a~~l~~~~~iVv~lsgrG~Kd~~~  401 (410)
T PLN02618        322 YPGVGPEHSFLKDTGRAEYYSVTDEEALEAFQRLSRLEGIIPALETSHALAYLEKLCPTLPDGTKVVVNCSGRGDKDVNT  401 (410)
T ss_pred             CCCCcHHHHHHHhhcCcEEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHHHhHhcCCCCEEEEEeCCCCcCCHHH
Confidence             01111  11222    2245777777663             4999999999999999888999999999999999999


Q ss_pred             cC
Q psy14801        382 FI  383 (404)
Q Consensus       382 ~~  383 (404)
                      ++
T Consensus       402 v~  403 (410)
T PLN02618        402 AI  403 (410)
T ss_pred             HH
Confidence            75

>TIGR00263 trpB tryptophan synthase, beta subunit

Probab=99.67  E-value=3.6e-16  Score=152.92  Aligned_cols=236  Identities=13%  Similarity=0.035  Sum_probs=144.6

Q ss_pred             HHHHHHhCC-CcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCC
Q psy14801        142 AHRIASQMK-NAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPF  218 (404)
Q Consensus       142 a~~l~~~~~-~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~  218 (404)
                      +.++.+..+ ..+|+ +|+.||++|.|  +|.+..++..+.+ .++.+|+++||||  .|+++|+.++..|+++++|+|+
T Consensus        56 ~~~l~~~~g~~~iy~K~E~~nptGS~K--~R~a~~~~~~a~~~g~~~vi~e~ssGN--~G~alA~~a~~~Gl~~~Iv~p~  131 (385)
T TIGR00263        56 APNLTEALGGAKIYLKREDLNHTGAHK--INNALGQALLAKRMGKKRIIAETGAGQ--HGVATATAAALLGLDCEVYMGA  131 (385)
T ss_pred             hHHHHHHhCCCeEEEEeCCCCCCccch--HHHHHHHHHHHHHcCCCEEEEEcCcHH--HHHHHHHHHHHcCCCEEEEecC
Confidence            344554443 45777 99999999988  9999888776653 3678899999999  9999999999999999999997


Q ss_pred             CCcccccC---CCCCCCCCCCcc-----ccccCC--CCccccccc-Ccccc-C-------------cEEecChHHHHHHH
Q psy14801        219 GSILAQPQ---SLNDVPENQISY-----NEVEGI--GYSFAATTL-DRNVI-D-------------QWGKCGDKDTFLMA  273 (404)
Q Consensus       219 ~~~~~~~~---~~~~~~~~~~~~-----~~~~~i--~~~~~~~~~-~~~~~-~-------------~~~~v~d~e~~~~~  273 (404)
                      ........   .+....+.....     .....+  ....+..+. +..+. .             .+..+...|++++.
T Consensus       132 ~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~~~t~g~Ei~~Ql  211 (385)
T TIGR00263       132 EDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQI  211 (385)
T ss_pred             CcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHHhhHHHHHHHHHH
Confidence            53211000   011111110000     000000  000000011 00011 1             11122233444433


Q ss_pred             HHH-HH-hcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC-------Ccccc----------------------
Q psy14801        274 RRL-IK-SEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR-------NYLTK----------------------  322 (404)
Q Consensus       274 ~~l-~~-~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~-------~~~~~----------------------  322 (404)
                      .+. .+ -+.+|+..|||++++|+.+.+.+ .|+.+|+.|++.+..       ..+..                      
T Consensus       212 ~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  290 (385)
T TIGR00263       212 LEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLHGMKTYLLQDEDGQIL  290 (385)
T ss_pred             HhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCCcccchhhhhhhhcCCeeEecCcccccccCCCCccc
Confidence            221 11 24589999999999999876544 588999999997631       00000                      


Q ss_pred             ------------ccch---hHHh---hcCccCcHHHHHHh-------------ccchhHHHHHHHHHHhcCCCCeEEEEE
Q psy14801        323 ------------FISD---EWMI---EKGFLDEAEELEEM-------------IHSGTAMHVACQAAKSLRPDQRCVVIL  371 (404)
Q Consensus       323 ------------~~~~---~~~~---~~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~  371 (404)
                                  ..+.   .+..   ++.+.++|++++.+             .|||++++++++++++++++++||+++
T Consensus       291 ~~~tia~gl~~~~~~p~~~~~~~~~~~~~v~Vsd~e~~~a~~~la~~egi~~~~ssaaalaa~~~~~~~l~~~~~Vv~i~  370 (385)
T TIGR00263       291 EAHSVSAGLDYPGVGPEHAYLHETGRATYEAITDDEALEAFKLLSRNEGIIPALESSHALAHLEKIAPTLPKDQIVVVNL  370 (385)
T ss_pred             ccceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCeechHHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence                        0000   0111   12345778777663             499999999999998887899999999


Q ss_pred             cCCCcchhhcc
Q psy14801        372 ADGVRNYLTKF  382 (404)
Q Consensus       372 ~D~g~rYl~~~  382 (404)
                      ||+|.+|++++
T Consensus       371 ~g~G~~d~~~~  381 (385)
T TIGR00263       371 SGRGDKDIFTI  381 (385)
T ss_pred             CCCCcCCHHHH
Confidence            99999999975

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.

>PRK08197 threonine synthase; Validated

Probab=99.67  E-value=4.5e-16  Score=153.11  Aligned_cols=229  Identities=13%  Similarity=0.062  Sum_probs=144.1

Q ss_pred             HHHHHHhCC-CcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC
Q psy14801        142 AHRIASQMK-NAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG  219 (404)
Q Consensus       142 a~~l~~~~~-~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~  219 (404)
                      ..++.+..+ ..+|+ +|+.||++|.|  ||.+..++.++.+.-...|+++++||  +|+++|+.++..|+++++|+|.+
T Consensus        85 ~~~l~~~~G~~~l~~K~E~~nPtGSfK--dRga~~~i~~a~~~g~~~vv~aSsGN--~g~alA~~aa~~G~~~~v~vp~~  160 (394)
T PRK08197         85 LPRLGKALGIGRLWVKDEGLNPTGSFK--ARGLAVGVSRAKELGVKHLAMPTNGN--AGAAWAAYAARAGIRATIFMPAD  160 (394)
T ss_pred             hHHHHHHhCCCcEEEEeCCCCCCcCcH--HhHHHHHHHHHHHcCCCEEEEeCCcH--HHHHHHHHHHHcCCcEEEEEcCC
Confidence            344554443 24666 99999999999  99999998887643234677788999  99999999999999999999988


Q ss_pred             CcccccCCCCCCCCCCCc---c-----ccccCC---CCcccccccCccccCcEEecChHHH-HHHHHHHHHh------cC
Q psy14801        220 SILAQPQSLNDVPENQIS---Y-----NEVEGI---GYSFAATTLDRNVIDQWGKCGDKDT-FLMARRLIKS------EG  281 (404)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~---~-----~~~~~i---~~~~~~~~~~~~~~~~~~~v~d~e~-~~~~~~l~~~------~g  281 (404)
                      .+......+....+....   .     ..+...   ...+...++        .+....|. ...+.||++|      +.
T Consensus       161 ~~~~k~~~~~~~GA~Vi~v~~~~~~~~~~a~~~~~~~g~~~~~~~--------~np~~ieG~~t~a~Ei~eQl~~~~pD~  232 (394)
T PRK08197        161 APEITRLECALAGAELYLVDGLISDAGKIVAEAVAEYGWFDVSTL--------KEPYRIEGKKTMGLELAEQLGWRLPDV  232 (394)
T ss_pred             CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCcccccCC--------CCccchhcHHHHHHHHHHHcCCCCCCE
Confidence            753221111111111000   0     000000   001111111        11111112 1234455554      34


Q ss_pred             cEeccchhhHHHHHHHHHHhc-------CCCCeEEEEecCCCCCcc---------------ccc----------cchhHH
Q psy14801        282 LLVGGSSGTAMHVACQAAKSL-------RPDQRCVVILADGVRNYL---------------TKF----------ISDEWM  329 (404)
Q Consensus       282 i~~~~~tg~tlag~~~~lk~~-------~~~~~vv~v~~~~~~~~~---------------~~~----------~~~~~~  329 (404)
                      +|+..|+|++++|+.+.++++       ++..++++|++.+...+.               ...          ..+...
T Consensus       233 vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~~~~~~~~~~~  312 (394)
T PRK08197        233 ILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIRVPKALGDFLV  312 (394)
T ss_pred             EEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehhhhCCCCCCHHHH
Confidence            888889999999999999985       377899999996542110               000          111111


Q ss_pred             hh-------cCccCcHHHHHHh-------------ccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchhhcc
Q psy14801        330 IE-------KGFLDEAEELEEM-------------IHSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLTKF  382 (404)
Q Consensus       330 ~~-------~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl~~~  382 (404)
                      .+       ..+.++|+++.++             .|||++++++++++++  +.++++||++++|+|.||++++
T Consensus       313 ~~~~~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaala~~~~l~~~~~~~~~~~Vv~v~tG~g~k~~~~~  387 (394)
T PRK08197        313 LDAVRETGGCAIAVSDDAILAAQRELAREEGLFACPEGAATFAAARQLRESGWLKGDERVVLFNTGSGLKYPDTV  387 (394)
T ss_pred             HHHHHHhCCEEEEeCHHHHHHHHHHHHhcCCceECchHHHHHHHHHHHHHcCCcCCCCcEEEEeCCCCcCchhhh
Confidence            11       1245777766553             3999999999999876  5578999999999999999874

>PRK06382 threonine dehydratase; Provisional

Probab=99.67  E-value=3.4e-16  Score=154.46  Aligned_cols=243  Identities=12%  Similarity=0.092  Sum_probs=149.9

Q ss_pred             HHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC--cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801        144 RIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK--VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS  220 (404)
Q Consensus       144 ~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~--~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~  220 (404)
                      .+.+..+..+|+ +|+.||.+|.|  +|.|+.++.++...  ... ||++++||  +|.++|+.++..|+++++|+|.+.
T Consensus        33 ~ls~~~g~~v~~K~E~~nptGSfK--~Rga~~~i~~~~~~~~~~g-vv~aSsGN--~g~a~A~aa~~~G~~~~ivmp~~~  107 (406)
T PRK06382         33 TFGDEYGGDIYFKLENFQKTGSFK--SRGAVFKFSKLSEDELRNG-VITASAGN--HAQGVAYAASINGIDAKIVMPEYT  107 (406)
T ss_pred             hhHHHhCCEEEEEecCCCCCCCCH--HHHHHHHHHhcchhccCCe-EEEECCCH--HHHHHHHHHHHcCCCEEEEEcCCC
Confidence            444444456776 99999999999  99999998776532  122 78899999  999999999999999999999987


Q ss_pred             cccccCCCCCCCCCCC--cc--ccccCCCCcccccccCccccCcEEecChHHHH-HHHHHHHHhc----CcEeccchhhH
Q psy14801        221 ILAQPQSLNDVPENQI--SY--NEVEGIGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSE----GLLVGGSSGTA  291 (404)
Q Consensus       221 ~~~~~~~~~~~~~~~~--~~--~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~----gi~~~~~tg~t  291 (404)
                      +......+........  ..  .......... ....+..+++++.+....+-+ ..+.||+++.    .+++..|||++
T Consensus       108 ~~~k~~~~~~~GA~Vv~~~~~~~~a~~~a~~l-a~~~~~~~v~~~~~~~~i~g~~t~~~Ei~eq~~~~d~vvvpvG~GG~  186 (406)
T PRK06382        108 IPQKVNAVEAYGAHVILTGRDYDEAHRYADKI-AMDENRTFIEAFNDRWVISGQGTIGLEIMEDLPDLDQIIVPVGGGGL  186 (406)
T ss_pred             HHHHHHHHHHcCCEEEEECCCHHHHHHHHHHH-HHhcCCEecCccCChHHHHHHHHHHHHHHHhcCCCCEEEEeeChHHH
Confidence            5322111111111100  00  0000000000 000111223333222222222 3356777664    48899999999


Q ss_pred             HHHHHHHHHhcCCCCeEEEEecCCCCCc-----------------cccccc-----h-h--H---HhhcCccCcHHHHHH
Q psy14801        292 MHVACQAAKSLRPDQRCVVILADGVRNY-----------------LTKFIS-----D-E--W---MIEKGFLDEAEELEE  343 (404)
Q Consensus       292 lag~~~~lk~~~~~~~vv~v~~~~~~~~-----------------~~~~~~-----~-~--~---~~~~~~~~~~~~~~~  343 (404)
                      ++|+.+++|+.+|+.+|++|+|.+...+                 +..++.     + .  +   ..+..+.++|+++..
T Consensus       187 ~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~ei~~  266 (406)
T PRK06382        187 ISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYPGDLTFDIAKNYVDDIVTVTEESVSK  266 (406)
T ss_pred             HHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCccccccCCCccHHHHHHHHHcCCEEEEECHHHHHH
Confidence            9999999999999999999999764321                 000110     0 0  1   123345577766655


Q ss_pred             hc------------cchhHHHHHHHHHHhcCCCCeEEEEEcCCCc---chhhccCCHHHHHHcCC
Q psy14801        344 MI------------HSGTAMHVACQAAKSLRPDQRCVVILADGVR---NYLTKFISDEWMIEKGF  393 (404)
Q Consensus       344 g~------------SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~---rYl~~~~~~~w~~~~~~  393 (404)
                      ++            .||++..||+...+..+++++||+|+|+ |.   +|+++++++.|+.+++.
T Consensus       267 a~~~l~~~~gi~~epsga~~laal~~~~~~~~~~~Vv~i~sG-Gn~d~~~~~~~~~~~~~~~~~~  330 (406)
T PRK06382        267 AIYKLFEREKIVAEPSGAVGLAAIMEGKVDVKGKKVAIVVSG-GNINPLLMSKIIYKELENLGQL  330 (406)
T ss_pred             HHHHHHHHcCceechHHHHHHHHHHhccccCCCCEEEEEeCC-CCCCHHHHHHHHHHHHHhcCCE
Confidence            32            3355555566544322357899999985 66   69999999999988775

>PLN02970 serine racemase

Probab=99.66  E-value=1.7e-16  Score=152.37  Aligned_cols=231  Identities=11%  Similarity=0.094  Sum_probs=138.7

Q ss_pred             HHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCc
Q psy14801        144 RIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI  221 (404)
Q Consensus       144 ~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~  221 (404)
                      ++.+..+..+|+ +|+.||++|.|  +|.|..++.++.. .....||++++||  +|+++|+.++..|+++++|+|++.+
T Consensus        35 ~l~~~~g~~i~~K~E~~nptGSfK--dRga~~~i~~~~~~~~~~~vv~aSsGN--~g~alA~~a~~~G~~~~ivvp~~~~  110 (328)
T PLN02970         35 SLDALAGRSLFFKCECFQKGGAFK--FRGACNAIFSLSDDQAEKGVVTHSSGN--HAAALALAAKLRGIPAYIVVPKNAP  110 (328)
T ss_pred             hhHHhhCCeEEEEecCCCCCCCcH--HHHHHHHHHHhhHhhcCCeEEEECCcH--HHHHHHHHHHHcCCCEEEEECCCCC
Confidence            344333345666 99999999999  9999999887652 2233477899999  9999999999999999999999875


Q ss_pred             ccccCCCCCCCCCCCc-c---ccccCCCCcccccccCccccCcEEecChHHHH-HHHHHHHHh----cCcEeccchhhHH
Q psy14801        222 LAQPQSLNDVPENQIS-Y---NEVEGIGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKS----EGLLVGGSSGTAM  292 (404)
Q Consensus       222 ~~~~~~~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~----~gi~~~~~tg~tl  292 (404)
                      ......+......... .   .........+ .......+.+++.+....+-+ .++.||+++    +.+|++.|||+++
T Consensus       111 ~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~l-a~~~g~~~~~~~~n~~~~~g~~t~g~Ei~~ql~~~D~vv~~vG~GG~~  189 (328)
T PLN02970        111 ACKVDAVIRYGGIITWCEPTVESREAVAARV-QQETGAVLIHPYNDGRVISGQGTIALEFLEQVPELDVIIVPISGGGLI  189 (328)
T ss_pred             HHHHHHHHhcCCEEEEeCCCHHHHHHHHHHH-HHhcCCEEeCCCCCcchhhehHHHHHHHHHhccCCCEEEEeeCchHHH
Confidence            3221111111111000 0   0000000000 000011122332222222222 234455544    4589999999999


Q ss_pred             HHHHHHHHhcCCCCeEEEEecCCCCCcc-------------ccccch---------hH-----HhhcCccCcHHHHHHh-
Q psy14801        293 HVACQAAKSLRPDQRCVVILADGVRNYL-------------TKFISD---------EW-----MIEKGFLDEAEELEEM-  344 (404)
Q Consensus       293 ag~~~~lk~~~~~~~vv~v~~~~~~~~~-------------~~~~~~---------~~-----~~~~~~~~~~~~~~~g-  344 (404)
                      +|+.+.+|+.+|+.+|++|+|.+...+.             .+.+.+         .|     ..+..+.++|++++.+ 
T Consensus       190 ~Gi~~~lk~~~~~~kvi~Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~  269 (328)
T PLN02970        190 SGIALAAKAIKPSIKIIAAEPKGADDAAQSKAAGEIITLPVTNTIADGLRASLGDLTWPVVRDLVDDVITVDDKEIIEAM  269 (328)
T ss_pred             HHHHHHHHhcCCCCEEEEEEECCCcHHHHHHHcCCceeCCCCCCccccccCCcCHHHHHHHHhhCCEEEEECHHHHHHHH
Confidence            9999999999999999999997643110             000111         11     1234456777777663 


Q ss_pred             ------------ccchhHHHHHHHHHHhc----CCCCeEEEEEcCCCcchhh
Q psy14801        345 ------------IHSGTAMHVACQAAKSL----RPDQRCVVILADGVRNYLT  380 (404)
Q Consensus       345 ------------~SsGa~~~~a~~~~~~~----~~~~~iv~i~~D~g~rYl~  380 (404)
                                  .|+|++++++++.+.+.    +.+++||+|+|- |..=++
T Consensus       270 ~~la~~~gi~ve~s~aa~laaa~~~~~~~~~~~~~~~~vv~v~~G-gn~~~~  320 (328)
T PLN02970        270 KLCYERLKVVVEPSGAIGLAAALSDSFRSNPAWKGCKNVGIVLSG-GNVDLG  320 (328)
T ss_pred             HHHHHhcCcEEeHHHHHHHHHHHhCcccccccccCCCeEEEEECC-CCCCHH
Confidence                        39999999988754431    224788888887 554333

>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia

Probab=99.66  E-value=4.9e-16  Score=148.27  Aligned_cols=222  Identities=11%  Similarity=0.055  Sum_probs=139.0

Q ss_pred             CCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC---cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc
Q psy14801        150 KNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK---VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP  225 (404)
Q Consensus       150 ~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~---~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~  225 (404)
                      +..+|+ +|+.||++|.|  +|.+..++.++.++   +...||++|+||  +|.++|+.++..|+++++|+|...+....
T Consensus        15 g~~i~~K~E~~nptGS~K--~R~a~~~l~~a~~~g~~~~~~vv~aSsGN--~g~alA~~a~~~G~~~~iv~p~~~~~~k~   90 (316)
T cd06448          15 GCNVFLKLENLQPSGSFK--IRGIGHLCQKSAKQGLNECVHVVCSSGGN--AGLAAAYAARKLGVPCTIVVPESTKPRVV   90 (316)
T ss_pred             CCeEEEEeccCCCcCChH--HHHHHHHHHHHHHhhcccCCeEEEeCCcH--HHHHHHHHHHHcCCCEEEEECCCCCHHHH
Confidence            345666 89999999999  99999999887643   356788999999  99999999999999999999998743211


Q ss_pred             -------CCCCCCCCCCCc--cccccCC---C-Cccccccc-CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhH
Q psy14801        226 -------QSLNDVPENQIS--YNEVEGI---G-YSFAATTL-DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTA  291 (404)
Q Consensus       226 -------~~~~~~~~~~~~--~~~~~~i---~-~~~~~~~~-~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~t  291 (404)
                             .++...+.....  ......+   . ..++..++ +..+...+ .....|+++++...-.-+.+++..|||++
T Consensus        91 ~~l~~~GA~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~~~g~-~t~~~Ei~~q~~~~~~~D~vv~~vG~Gg~  169 (316)
T cd06448          91 EKLRDEGATVVVHGKVWWEADNYLREELAENDPGPVYVHPFDDPLIWEGH-SSMVDEIAQQLQSQEKVDAIVCSVGGGGL  169 (316)
T ss_pred             HHHHHcCCEEEEECCchHHHHHHHHHHHHhccCCcEEeCCCCCchhhccc-cHHHHHHHHHccccCCCCEEEEEeCchHH
Confidence                   111111100000  0000000   0 11222222 11222222 33455555544320012568999999999


Q ss_pred             HHHHHHHHHhcC-CCCeEEEEecCCCCCcc--------------c---cccchh------H--H---hhcCccCcHHHHH
Q psy14801        292 MHVACQAAKSLR-PDQRCVVILADGVRNYL--------------T---KFISDE------W--M---IEKGFLDEAEELE  342 (404)
Q Consensus       292 lag~~~~lk~~~-~~~~vv~v~~~~~~~~~--------------~---~~~~~~------~--~---~~~~~~~~~~~~~  342 (404)
                      ++|+.+.+++.+ ++.+|++|+|.+...+.              .   .+++..      |  +   .+..+.++|++++
T Consensus       170 ~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~~~~~~~v~Vsd~e~~  249 (316)
T cd06448         170 LNGIVQGLERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEHNIKSEVVSDRDAV  249 (316)
T ss_pred             HHHHHHHHHhcCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHHhcCCeEEEECHHHHH
Confidence            999999999986 88999999996642110              0   011111      1  1   1223457777765


Q ss_pred             H-------------hccchhHHHHHHHHH-----H--hcCCCCeEEEEEcCCCc
Q psy14801        343 E-------------MIHSGTAMHVACQAA-----K--SLRPDQRCVVILADGVR  376 (404)
Q Consensus       343 ~-------------g~SsGa~~~~a~~~~-----~--~~~~~~~iv~i~~D~g~  376 (404)
                      .             +.|||++++|+++..     +  .+.++++||+|+||+..
T Consensus       250 ~a~~~l~~~~gi~~~~ssaa~laa~~~~~~~~~~~~~~~~~~~~Vv~iltg~n~  303 (316)
T cd06448         250 QACLRFADDERILVEPACGAALAVVYSGKILDLQLEVLLTPLDNVVVVVCGGSN  303 (316)
T ss_pred             HHHHHHHHHcCceechhHHHHHHHHHhCcchhhhcccccCCCCeEEEEECCCCC
Confidence            5             338999999998532     1  35688999999999764

>PRK07048 serine/threonine dehydratase; Validated

Probab=99.66  E-value=4e-16  Score=149.59  Aligned_cols=228  Identities=11%  Similarity=0.045  Sum_probs=141.2

Q ss_pred             HHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcc
Q psy14801        145 IASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSIL  222 (404)
Q Consensus       145 l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~  222 (404)
                      +.+..+..+|+ +|+.||++|.|  +|.|..++.++..+ ....||++|+||  +|+++|+.++..|+++++|+|.+.+.
T Consensus        33 l~~~~g~~i~~K~E~~nptGS~K--~R~a~~~i~~~~~~~~~~~vv~aSsGN--~g~alA~~a~~~G~~~~vvvp~~~~~  108 (321)
T PRK07048         33 ADARTGAQVFFKCENFQRMGAFK--FRGAYNALSQFSPEQRRAGVVTFSSGN--HAQAIALSARLLGIPATIVMPQDAPA  108 (321)
T ss_pred             hHHhcCCeEEEEeccCCCCCCee--HHHHHHHHHhhhHhhcCCcEEEeCCCH--HHHHHHHHHHHcCCCEEEEECCCCCH
Confidence            33333345666 99999999999  99999999876521 223478889999  99999999999999999999998753


Q ss_pred             cccCCCCCCCCCCC---cc-----ccccCC---CCcccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhH
Q psy14801        223 AQPQSLNDVPENQI---SY-----NEVEGI---GYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTA  291 (404)
Q Consensus       223 ~~~~~~~~~~~~~~---~~-----~~~~~i---~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~t  291 (404)
                      .....+........   ..     .....+   ...++..++++...-.++.....|++++..   +-+.+++..|||++
T Consensus       109 ~k~~~~~~~GAeV~~~~~~~~~~~~~a~~l~~~~g~~~~~~~~~~~~~~g~~t~~~EI~~q~~---~~D~vv~~vGtGG~  185 (321)
T PRK07048        109 AKVAATRGYGGEVVTYDRYTEDREEIGRRLAEERGLTLIPPYDHPHVIAGQGTAAKELFEEVG---PLDALFVCLGGGGL  185 (321)
T ss_pred             HHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCEEECCCCCcchhhccchHHHHHHhhcC---CCCEEEEecChhHH
Confidence            22111111111100   00     000000   011112222111111222233344443332   12459999999999


Q ss_pred             HHHHHHHHHhcCCCCeEEEEecCCCCCc----c--------c----------cccchh-H-----HhhcCccCcHHHHHH
Q psy14801        292 MHVACQAAKSLRPDQRCVVILADGVRNY----L--------T----------KFISDE-W-----MIEKGFLDEAEELEE  343 (404)
Q Consensus       292 lag~~~~lk~~~~~~~vv~v~~~~~~~~----~--------~----------~~~~~~-~-----~~~~~~~~~~~~~~~  343 (404)
                      ++|+.+.+|+..++.+|++|+|.+...+    .        .          +.++.. |     ..|..+.++|++++.
T Consensus       186 ~~Gi~~~~k~~~~~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~  265 (321)
T PRK07048        186 LSGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHLGNYTFPIIRRLVDDIVTVSDAELVD  265 (321)
T ss_pred             HHHHHHHHHHhCCCCEEEEEeeCCChhHHHHHHcCCcccCCCCCCcccccccCCccHHHHHHHHHhCCceEEECHHHHHH
Confidence            9999999999999999999999764210    0        0          011111 1     233445677777655


Q ss_pred             h-------------ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhc
Q psy14801        344 M-------------IHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK  381 (404)
Q Consensus       344 g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~  381 (404)
                      +             .|+|+++++++++.++ .++++||+|++. |...++.
T Consensus       266 a~~~l~~~~gi~~eps~a~~laa~~~~~~~-~~~~~vv~i~tG-Gn~~~~~  314 (321)
T PRK07048        266 AMRFFAERMKIVVEPTGCLGAAAALRGKVP-LKGKRVGVIISG-GNVDLAR  314 (321)
T ss_pred             HHHHHHHhCCceeccHHHHHHHHHHhCchh-cCCCeEEEEeCC-CCCCHHH
Confidence            3             3888999988887665 468899999995 7776664

>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate

Probab=99.66  E-value=6e-16  Score=148.77  Aligned_cols=221  Identities=14%  Similarity=0.043  Sum_probs=138.1

Q ss_pred             CcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCC
Q psy14801        151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLN  229 (404)
Q Consensus       151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~  229 (404)
                      ..+|+ +|+.||.+|.|  +|.+..++.++.++-...||++++||  +|+++|+.++..|+++++|+|.+.+......+.
T Consensus        38 ~~i~~K~E~~nptGS~K--~R~a~~~l~~a~~~g~~~vv~~SsGN--~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~  113 (324)
T cd01563          38 KNLYVKDEGLNPTGSFK--DRGMTVAVSKAKELGVKAVACASTGN--TSASLAAYAARAGIKCVVFLPAGKALGKLAQAL  113 (324)
T ss_pred             CceEEEecCCCCcccHH--HhhHHHHHHHHHHcCCCEEEEeCCCH--HHHHHHHHHHHcCCceEEEEeCCCCHHHHHHHH
Confidence            34666 99999999999  99999999988754344677889999  999999999999999999999887432111111


Q ss_pred             CCCCCCC---ccc-----cccCCC--CcccccccC-ccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHH
Q psy14801        230 DVPENQI---SYN-----EVEGIG--YSFAATTLD-RNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQA  298 (404)
Q Consensus       230 ~~~~~~~---~~~-----~~~~i~--~~~~~~~~~-~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~  298 (404)
                      .......   ...     ....+.  ..++..+++ ..+. ..+.....|+++++.. -.-+.+|+..|||++++|+...
T Consensus       114 ~~GA~Vi~~~~~~~~~~~~a~~~~~~~~~~~~~~~n~~~~-~g~~t~~~Ei~~q~~~-~~~d~vv~~vGtGg~~~G~~~~  191 (324)
T cd01563         114 AYGATVLAVEGNFDDALRLVRELAEENWIYLSNSLNPYRL-EGQKTIAFEIAEQLGW-EVPDYVVVPVGNGGNITAIWKG  191 (324)
T ss_pred             HcCCEEEEECCcHHHHHHHHHHHHHhcCeeccCCCCccee-cchhhhHHHHHHHcCC-CCCCEEEEecCCcHHHHHHHHH
Confidence            1111000   000     000000  011111111 1111 1122334444443321 0124589999999999999999


Q ss_pred             HHhcC------CCCeEEEEecCCCCCcc-------------------ccccc-------hh---HHh---hcCccCcHHH
Q psy14801        299 AKSLR------PDQRCVVILADGVRNYL-------------------TKFIS-------DE---WMI---EKGFLDEAEE  340 (404)
Q Consensus       299 lk~~~------~~~~vv~v~~~~~~~~~-------------------~~~~~-------~~---~~~---~~~~~~~~~~  340 (404)
                      +++..      ++.+|++|++.+.....                   ...++       ..   ++.   +..+.++|++
T Consensus       192 ~k~~~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e  271 (324)
T cd01563         192 FKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIRIGNPASGPKALRAVRESGGTAVAVSDEE  271 (324)
T ss_pred             HHHHHhCCccccCCeEEEEecCCCCHHHHHHHcCCCccCcCCCCCceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHH
Confidence            98753      57899999986542110                   00110       01   111   2335567777


Q ss_pred             HHHh-------------ccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcc
Q psy14801        341 LEEM-------------IHSGTAMHVACQAAKS--LRPDQRCVVILADGVRN  377 (404)
Q Consensus       341 ~~~g-------------~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~r  377 (404)
                      +..+             .|||++++++++++++  +.++++||+|+||+|.|
T Consensus       272 ~~~a~~~l~~~~gi~~~pssa~alaa~~~l~~~~~~~~~~~Vv~v~tg~g~~  323 (324)
T cd01563         272 ILEAQKLLARTEGIFVEPASAASLAGLKKLREEGIIDKGERVVVVLTGHGLK  323 (324)
T ss_pred             HHHHHHHHHhcCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCccC
Confidence            6653             3999999999999876  45789999999999986

It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.

>PRK13028 tryptophan synthase subunit beta; Provisional

Probab=99.65  E-value=8.7e-16  Score=149.65  Aligned_cols=237  Identities=11%  Similarity=0.027  Sum_probs=147.5

Q ss_pred             HHHHHHhC-CCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCC
Q psy14801        142 AHRIASQM-KNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPF  218 (404)
Q Consensus       142 a~~l~~~~-~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~  218 (404)
                      +.++.+.. +..+|+ +|..||++|.|  +|.+..++..+.+ ..+.+|+++|+||  .|+++|+.++..|+++++++|+
T Consensus        68 ~~~Ls~~~Gg~~IylK~EdlnptGS~K--~r~al~~~l~A~~~G~~~vI~etgsGn--hG~A~A~aaa~~Gl~~~I~m~~  143 (402)
T PRK13028         68 AKRLSEELGGAQIYLKREDLNHTGAHK--INNCLGQALLAKRMGKKRLIAETGAGQ--HGVATATAAALFGLECEIYMGE  143 (402)
T ss_pred             hHHhHhhcCCCeEEEEECCCCCCcchH--HHHHHHHHHHHHHcCCCeEEEecCcHH--HHHHHHHHHHHcCCCEEEEECC
Confidence            44555544 346777 99999999988  8988877666542 2567899999999  9999999999999999999998


Q ss_pred             CCccccc---CCCCCCCCCCCc-----ccc-----------ccCCCCc-cccccc-----CccccCcEEecChHHHHHHH
Q psy14801        219 GSILAQP---QSLNDVPENQIS-----YNE-----------VEGIGYS-FAATTL-----DRNVIDQWGKCGDKDTFLMA  273 (404)
Q Consensus       219 ~~~~~~~---~~~~~~~~~~~~-----~~~-----------~~~i~~~-~~~~~~-----~~~~~~~~~~v~d~e~~~~~  273 (404)
                      ..+....   ..+....+....     ...           ....... ++..+.     ...++.++..+...|+.+++
T Consensus       144 ~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~Ei~~Q~  223 (402)
T PRK13028        144 VDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQF  223 (402)
T ss_pred             CcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhHHHHHHHHHHH
Confidence            6422100   001111111000     000           0000000 000000     00111223333444554433


Q ss_pred             HHH-H-HhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCC--------CCCcc-----------------------
Q psy14801        274 RRL-I-KSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADG--------VRNYL-----------------------  320 (404)
Q Consensus       274 ~~l-~-~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~--------~~~~~-----------------------  320 (404)
                      .+. . .-+.+|++.|||++++|+.+.+++ .++.+|+.|++.+        ...+.                       
T Consensus       224 ~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~~~~~l~~~~g~~~  302 (402)
T PRK13028        224 LEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGFKSYVLQDEDGEPA  302 (402)
T ss_pred             HHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCceEEEEecCCCCcccccccccccCCCcceecccceeeccccCCCcC
Confidence            211 1 123499999999999999999876 4889999999976        11110                       


Q ss_pred             -----c-----cccchhH--Hh----hcCccCcHHHHHHh-------------ccchhHHHHHHHHHHhcCCCCeEEEEE
Q psy14801        321 -----T-----KFISDEW--MI----EKGFLDEAEELEEM-------------IHSGTAMHVACQAAKSLRPDQRCVVIL  371 (404)
Q Consensus       321 -----~-----~~~~~~~--~~----~~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~  371 (404)
                           .     +..+...  +.    +....++|+++..+             .|||+++++++++++++.++++||+++
T Consensus       303 ~~~sia~gl~~~~vgp~~~~l~~~~~~~~v~VtD~eal~a~~~La~~eGIi~~~~sa~alA~a~~~a~~l~~~~~VVv~l  382 (402)
T PRK13028        303 PVHSIAAGLDYPGVGPEHAYLKDIGRVEYVTATDEEALDAFFLLSRTEGIIPALESSHAVAYAIKLAPELSKDETILVNL  382 (402)
T ss_pred             CccceeccccCCCCCHHHHHHHHhcCcEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHHhhhhcCCCCeEEEEE
Confidence                 0     0011110  11    22345778777663             399999999999999888899999999


Q ss_pred             cCCCcchhhccC
Q psy14801        372 ADGVRNYLTKFI  383 (404)
Q Consensus       372 ~D~g~rYl~~~~  383 (404)
                      ||+|+||++++.
T Consensus       383 sG~G~kd~~~~~  394 (402)
T PRK13028        383 SGRGDKDIDYVA  394 (402)
T ss_pred             CCCCccCHHHHH
Confidence            999999999875

>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions

Probab=99.65  E-value=7.2e-16  Score=142.28  Aligned_cols=214  Identities=16%  Similarity=0.201  Sum_probs=132.0

Q ss_pred             CcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC---cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC
Q psy14801        151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK---VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ  226 (404)
Q Consensus       151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~---~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~  226 (404)
                      ..+|+ +|+.||.+|.|  +|.+..++.++...   ++.+|++++|||  +|.++|+.++..+++++++.|.+.+.....
T Consensus        15 ~~l~~K~e~~~ptgS~K--~R~a~~~l~~a~~~g~~~~~~vv~~ssGN--~g~alA~~a~~~g~~~~v~~p~~~~~~~~~   90 (244)
T cd00640          15 ANIYLKLEFLNPTGSFK--DRGALNLILLAEEEGKLPKGVIIESTGGN--TGIALAAAAARLGLKCTIVMPEGASPEKVA   90 (244)
T ss_pred             CEEEEEecccCCcCCcH--HHHHHHHHHHHHHcCCCCCCEEEEeCCcH--HHHHHHHHHHHcCCCEEEEECCCCCHHHHH
Confidence            45666 89999999999  99999999887633   367889999999  999999999999999999999887432111


Q ss_pred             CCCCCCCCCCc-cccccC---CCCcccccccCccccCcEEecChHHHH-HHHHHHHHh------cCcEeccchhhHHHHH
Q psy14801        227 SLNDVPENQIS-YNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKS------EGLLVGGSSGTAMHVA  295 (404)
Q Consensus       227 ~~~~~~~~~~~-~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~------~gi~~~~~tg~tlag~  295 (404)
                      .+......... ......   ....+.....+..+.+++.+..+.+.+ ..+.|+.++      +.+++..|||++++|+
T Consensus        91 ~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~~~G~  170 (244)
T cd00640          91 QMRALGAEVVLVPGDFDDAIALAKELAEEDPGAYYVNQFDNPANIAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGI  170 (244)
T ss_pred             HHHHCCCEEEEECCCHHHHHHHHHHHHHhCCCCEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCccHHHHHH
Confidence            11111110000 000000   000000000111233333222222222 223444443      4588888999999999


Q ss_pred             HHHHHhcCCCCeEEEEecCCCCCccccccchh-HHhhcCccCcHHHHHHhccchhHHHHHHHHHHhcCCCCeEEEEEcCC
Q psy14801        296 CQAAKSLRPDQRCVVILADGVRNYLTKFISDE-WMIEKGFLDEAEELEEMIHSGTAMHVACQAAKSLRPDQRCVVILADG  374 (404)
Q Consensus       296 ~~~lk~~~~~~~vv~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~  374 (404)
                      .+.+++..|..+|++|++      ......|+ .+..-......+.++.+.|||++++++.+++++.+++++||+++||+
T Consensus       171 ~~~~~~~~~~~~ii~v~~------~~~~v~d~~~~~a~~~l~~~~gi~~~pssa~~~aa~~~~~~~~~~~~~vv~v~tg~  244 (244)
T cd00640         171 ARALKELLPNVKVIGVEP------EVVTVSDEEALEAIRLLAREEGILVEPSSAAALAAALKLAKKLGKGKTVVVILTGG  244 (244)
T ss_pred             HHHHHHhCCCCEEEEEee------eEEEECHHHHHHHHHHHHHHcCceECHhHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            999999999999999999      00011111 11000001111223335599999999999998876789999999985

This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy

>PRK06815 hypothetical protein; Provisional

Probab=99.65  E-value=5.2e-16  Score=148.44  Aligned_cols=222  Identities=13%  Similarity=0.110  Sum_probs=139.6

Q ss_pred             HHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCc
Q psy14801        144 RIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI  221 (404)
Q Consensus       144 ~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~  221 (404)
                      .+.+..+..+|+ +|+.||++|.|  +|.+..+++++..+ ...-||++++||  +|.++|+.++..|+++++++|...+
T Consensus        28 ~l~~~~g~~i~~K~E~~nptgS~K--dR~a~~~~~~l~~~~~~~~vv~aSsGN--~g~alA~~a~~~G~~~~i~~p~~~~  103 (317)
T PRK06815         28 LLSQHTGCEVYLKCEHLQHTGSFK--FRGASNKLRLLNEAQRQQGVITASSGN--HGQGVALAAKLAGIPVTVYAPEQAS  103 (317)
T ss_pred             hHHHhhCCeEEEEecCCCCCCCcH--HHHHHHHHHhcchhhcCceEEEECCCh--HHHHHHHHHHHhCCCEEEEECCCCC
Confidence            344433345666 99999999999  99999999876522 222367789999  9999999999999999999998875


Q ss_pred             ccccCCCCCCCCCCCc---cc-----cccCC---CCcccccccCccccCcEEecChHHHHHHHHHHHHh----cCcEecc
Q psy14801        222 LAQPQSLNDVPENQIS---YN-----EVEGI---GYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKS----EGLLVGG  286 (404)
Q Consensus       222 ~~~~~~~~~~~~~~~~---~~-----~~~~i---~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~----~gi~~~~  286 (404)
                      ......+.........   ..     ....+   ...++..+++..+.-.++..       .+.||+++    +.+++..
T Consensus       104 ~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~g~~t-------~a~Ei~~q~~~~d~vv~~v  176 (317)
T PRK06815        104 AIKLDAIRALGAEVRLYGGDALNAELAARRAAEQQGKVYISPYNDPQVIAGQGT-------IGMELVEQQPDLDAVFVAV  176 (317)
T ss_pred             HHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCEEecCCCChhhhcchhH-------HHHHHHHhcCCCCEEEEEC
Confidence            3211111111111000   00     00000   00111111111111111222       34444444    4589999


Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEecCCCCCc-----------------ccccc----c-hh-------HHhhcCccCc
Q psy14801        287 SSGTAMHVACQAAKSLRPDQRCVVILADGVRNY-----------------LTKFI----S-DE-------WMIEKGFLDE  337 (404)
Q Consensus       287 ~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~-----------------~~~~~----~-~~-------~~~~~~~~~~  337 (404)
                      |||++++|+.+++++..++.+|++|+|.+...+                 +...+    . +.       ...+..+.++
T Consensus       177 G~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~V~  256 (317)
T PRK06815        177 GGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVEPGAITFPLCQQLIDQKVLVS  256 (317)
T ss_pred             cHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCcccHHHHHHHHHhCCeEEEEC
Confidence            999999999999999999999999999764321                 11111    0 00       1123445677


Q ss_pred             HHHHHHh-------------ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcc
Q psy14801        338 AEELEEM-------------IHSGTAMHVACQAAKSLRPDQRCVVILADGVRN  377 (404)
Q Consensus       338 ~~~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~r  377 (404)
                      |+++.++             .|||+++++++++++++ ++++||+|+||+|-+
T Consensus       257 d~e~~~a~~~la~~~gi~vepssg~alaa~~~~~~~~-~~~~vv~i~tG~~~~  308 (317)
T PRK06815        257 EEEIKEAMRLIAETDRWLIEGAAGVALAAALKLAPRY-QGKKVAVVLCGKNIV  308 (317)
T ss_pred             HHHHHHHHHHHHHhcCCeEecHHHHHHHHHHhCchhc-CCCcEEEEECCCCCC
Confidence            7776653             38999999999988774 688999999998864

>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen

Probab=99.64  E-value=5.4e-16  Score=147.82  Aligned_cols=227  Identities=12%  Similarity=0.118  Sum_probs=140.9

Q ss_pred             HHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801        143 HRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS  220 (404)
Q Consensus       143 ~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~  220 (404)
                      .++.+..+..+|+ +|+.||++|.|  +|.+..++.++.+. +...||+++|||  +|.++|+.++..|+++++|.|.+.
T Consensus        24 ~~l~~~~g~~i~~K~E~~nptgS~K--dr~a~~~l~~~~~~~~~~~iv~~ssGN--~g~alA~~a~~~G~~~~ivvp~~~   99 (304)
T cd01562          24 PTLSELLGAEVYLKCENLQKTGSFK--IRGAYNKLLSLSEEERAKGVVAASAGN--HAQGVAYAAKLLGIPATIVMPETA   99 (304)
T ss_pred             hhhHHHhCCeEEEEeccCCCcCCcH--HHhHHHHHHhcCHhhcCCcEEEECCCH--HHHHHHHHHHHcCCCEEEEECCCC
Confidence            3444444446777 99999999999  99999999988742 234578889999  999999999999999999999887


Q ss_pred             cccccCCCCCCCCCCC---cc-ccccCCCCcccccccCccccCcEEecChHHHH-HHHHHHHHhc----CcEeccchhhH
Q psy14801        221 ILAQPQSLNDVPENQI---SY-NEVEGIGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSE----GLLVGGSSGTA  291 (404)
Q Consensus       221 ~~~~~~~~~~~~~~~~---~~-~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~----gi~~~~~tg~t  291 (404)
                      +......+........   .. .........+ .......+.+++.+....+.+ .++.||+++.    .+|+..|||++
T Consensus       100 ~~~k~~~l~~~Ga~vi~~~~~~~~~~~~a~~l-a~~~~~~~~~~~~n~~~~~g~~~~~~Ei~~q~~~~d~vv~~vGtGgt  178 (304)
T cd01562         100 PAAKVDATRAYGAEVVLYGEDFDEAEAKAREL-AEEEGLTFIHPFDDPDVIAGQGTIGLEILEQVPDLDAVFVPVGGGGL  178 (304)
T ss_pred             CHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHH-HHhcCCEEeCCCCCcchhccHHHHHHHHHHhcCCCCEEEEecCHHHH
Confidence            4321111111111000   00 0000000000 000011122332222222222 2345555553    48899999999


Q ss_pred             HHHHHHHHHhcCCCCeEEEEecCCCCCccc-----------------cccc----h--hH-----HhhcCccCcHHHHHH
Q psy14801        292 MHVACQAAKSLRPDQRCVVILADGVRNYLT-----------------KFIS----D--EW-----MIEKGFLDEAEELEE  343 (404)
Q Consensus       292 lag~~~~lk~~~~~~~vv~v~~~~~~~~~~-----------------~~~~----~--~~-----~~~~~~~~~~~~~~~  343 (404)
                      ++|+.+.+|+..++.+|+++++.+...+..                 ..++    .  .|     ..+..+.++|++++.
T Consensus       179 ~~Gi~~~lk~~~~~~kvigv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~  258 (304)
T cd01562         179 IAGIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGELTFEIIRKLVDDVVTVSEDEIAA  258 (304)
T ss_pred             HHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHcCCcccCCCCCcccccccCCCchHHHHHHHHHhCCeEEEECHHHHHH
Confidence            999999999988999999999965422100                 0110    0  01     122334566666655


Q ss_pred             -------------hccchhHHHHHHHHHHhcCCCCeEEEEEcCCC
Q psy14801        344 -------------MIHSGTAMHVACQAAKSLRPDQRCVVILADGV  375 (404)
Q Consensus       344 -------------g~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g  375 (404)
                                   +.|||++++++++++++. ++++||+|+|++.
T Consensus       259 a~~~l~~~eGi~~~pss~~a~a~~~~~~~~~-~~~~vv~i~tGG~  302 (304)
T cd01562         259 AMLLLFEREKLVAEPAGALALAALLSGKLDL-KGKKVVVVLSGGN  302 (304)
T ss_pred             HHHHHHHHcCceEchhHHHHHHHHHhCcccc-CCCeEEEEecCCC
Confidence                         348999999999998875 7899999999975

Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=99.63  E-value=6.8e-16  Score=151.53  Aligned_cols=242  Identities=14%  Similarity=0.147  Sum_probs=144.0

Q ss_pred             HHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801        143 HRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS  220 (404)
Q Consensus       143 ~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~  220 (404)
                      ..+++..+..+|+ .|+.||++|.|  +|.|+.++.++..+ ....||++++||  +|+++|+.++..|+++++|+|...
T Consensus         7 ~~ls~~~g~~i~~K~E~~~ptgS~K--~R~a~~~i~~~~~~~~~~~vv~aSsGN--~g~alA~~a~~~G~~~~iv~p~~~   82 (380)
T TIGR01127         7 TTLSDITGSEVYLKLENLQKTGSFK--IRGALNKIANLSEDQRQRGVVAASAGN--HAQGVAYAAKKFGIKAVIVMPESA   82 (380)
T ss_pred             HHHHHHhCCeEEEEecCCCCCCCcH--HHHHHHHHHhcchhccCCEEEEECCCH--HHHHHHHHHHHcCCCEEEEEcCCC
Confidence            3455544456776 99999999999  99999999988743 223588999999  999999999999999999999988


Q ss_pred             cccccCCCCCCCCCCCc-cc---cccCCCCcccccccCccccCcEEecChHHHH-HHHHHHHHhc----CcEeccchhhH
Q psy14801        221 ILAQPQSLNDVPENQIS-YN---EVEGIGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSE----GLLVGGSSGTA  291 (404)
Q Consensus       221 ~~~~~~~~~~~~~~~~~-~~---~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~----gi~~~~~tg~t  291 (404)
                      +......+......... ..   ........+ .......+++++.+....+-. ..+.|++++.    .+++..|||++
T Consensus        83 ~~~k~~~~~~~GA~V~~~~~~~~~a~~~a~~~-~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~D~vv~~vG~Gg~  161 (380)
T TIGR01127        83 PPSKVKATKSYGAEVILHGDDYDEAYAFATSL-AEEEGRVFVHPFDDEFVMAGQGTIGLEIMEDIPDVDTVIVPVGGGGL  161 (380)
T ss_pred             cHHHHHHHHHCCCEEEEECCCHHHHHHHHHHH-HHhcCCEecCCCCChhhhhhhHHHHHHHHHhCCCCCEEEEEeChHHH
Confidence            53221111111111000 00   000000000 000001111222111111111 2345555554    48899999999


Q ss_pred             HHHHHHHHHhcCCCCeEEEEecCCCCCcc-------------ccccchh----------H-----HhhcCccCcHHHHHH
Q psy14801        292 MHVACQAAKSLRPDQRCVVILADGVRNYL-------------TKFISDE----------W-----MIEKGFLDEAEELEE  343 (404)
Q Consensus       292 lag~~~~lk~~~~~~~vv~v~~~~~~~~~-------------~~~~~~~----------~-----~~~~~~~~~~~~~~~  343 (404)
                      ++|+..++|+..|+.+|++|+|.+...+.             ...+.+.          +     ..|..+.++|+++..
T Consensus       162 ~aGi~~~~k~~~p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~  241 (380)
T TIGR01127       162 ISGVASAAKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDVVTVDEEEIAN  241 (380)
T ss_pred             HHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCCEEEEECHHHHHH
Confidence            99999999999999999999997643211             0111110          0     223445677776655


Q ss_pred             hc-------------cchhHHHHHHHHHHhcCCCCeEEEEEcCCC--cchhhccCCHHHHHH
Q psy14801        344 MI-------------HSGTAMHVACQAAKSLRPDQRCVVILADGV--RNYLTKFISDEWMIE  390 (404)
Q Consensus       344 g~-------------SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g--~rYl~~~~~~~w~~~  390 (404)
                      ++             |++++++++++.... .++++||+|+|++.  ...++++.+..+..+
T Consensus       242 a~~~l~~~~gi~~e~s~a~~laa~~~~~~~-~~~~~vv~i~sGGn~d~d~l~~vi~~gl~~~  302 (380)
T TIGR01127       242 AIYLLLERHKILAEGAGAAGVAALLEQKVD-VKGKKIAVVLSGGNIDLNLLNKIIEKGLVKS  302 (380)
T ss_pred             HHHHHHHhcCeEechHHHHHHHHHHhCccc-cCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            32             666777766654322 36889999999843  245555555544333

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK04346 tryptophan synthase subunit beta; Validated

Probab=99.63  E-value=2.9e-15  Score=145.78  Aligned_cols=237  Identities=12%  Similarity=0.050  Sum_probs=148.0

Q ss_pred             HHHHHHhC-CCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCC
Q psy14801        142 AHRIASQM-KNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPF  218 (404)
Q Consensus       142 a~~l~~~~-~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~  218 (404)
                      +.++.+.. +..+|+ +|..||++|.|  +|.+..++..+.+ ..+.+|+++|+||  .|+++|+.++..|+++++++|+
T Consensus        64 ~~~Ls~~~gg~~IylK~EdlnptGS~K--~r~al~~~l~A~~~Gk~~vIaetgaGn--hG~A~A~~aa~~Gl~c~I~mp~  139 (397)
T PRK04346         64 AERLSEHLGGAKIYLKREDLNHTGAHK--INNVLGQALLAKRMGKKRIIAETGAGQ--HGVATATAAALLGLECVIYMGA  139 (397)
T ss_pred             hHHHHHHcCCCeEEEEECCCCCccchH--HHHHHHHHHHHHHcCCCeEEEecCcHH--HHHHHHHHHHHcCCcEEEEecC
Confidence            45666655 346777 99999999888  8888777665542 2567899999999  9999999999999999999998


Q ss_pred             CCccc-cc--CCCCCCCCCCC----c-cccccCCC--CcccccccC---------------ccccCcEEecChHHHHHHH
Q psy14801        219 GSILA-QP--QSLNDVPENQI----S-YNEVEGIG--YSFAATTLD---------------RNVIDQWGKCGDKDTFLMA  273 (404)
Q Consensus       219 ~~~~~-~~--~~~~~~~~~~~----~-~~~~~~i~--~~~~~~~~~---------------~~~~~~~~~v~d~e~~~~~  273 (404)
                      ..... ..  ..+....+...    . ....+.+.  ...+..+++               ..++..+..+...|+.+++
T Consensus       140 ~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~Ei~eQ~  219 (397)
T PRK04346        140 EDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQI  219 (397)
T ss_pred             CchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHHHHHHH
Confidence            64210 00  00111111100    0 00000000  000000000               0011223344456666555


Q ss_pred             HHHH--HhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCC----------------------ccc--------
Q psy14801        274 RRLI--KSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRN----------------------YLT--------  321 (404)
Q Consensus       274 ~~l~--~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~----------------------~~~--------  321 (404)
                      .+..  .-+.++++.|+|++++|+...+.+ +|+.+++.|++.+...                      |+.        
T Consensus       220 ~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~  298 (397)
T PRK04346        220 LEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHGAKTYLLQDEDGQIL  298 (397)
T ss_pred             HHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEecCCCccccccccchhhcCCeeeeccccceecccCCCccC
Confidence            4311  124599999999999999887655 6889999999976310                      000        


Q ss_pred             -----------cccch--hHHhh----cCccCcHHHHHHh-------------ccchhHHHHHHHHHHhcCCCCeEEEEE
Q psy14801        322 -----------KFISD--EWMIE----KGFLDEAEELEEM-------------IHSGTAMHVACQAAKSLRPDQRCVVIL  371 (404)
Q Consensus       322 -----------~~~~~--~~~~~----~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~  371 (404)
                                 +.++.  .++.+    +...++|+++..+             .+|+++++++++++++++++++||+++
T Consensus       299 ~~~sis~gL~~pgvgp~~~~l~~~~~~~~v~VtD~eal~a~~~L~~~eGIi~~~esa~AlA~a~kla~~l~~~~~Vvv~l  378 (397)
T PRK04346        299 ETHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDDEALEAFQLLSRLEGIIPALESSHALAYALKLAPTLGKDQIIVVNL  378 (397)
T ss_pred             CCceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCEeccHHHHHHHHHHHhhhhcCCCCeEEEEe
Confidence                       11111  11222    2245778777653             488899999999998888899999999


Q ss_pred             cCCCcchhhccC
Q psy14801        372 ADGVRNYLTKFI  383 (404)
Q Consensus       372 ~D~g~rYl~~~~  383 (404)
                      ||+|+||++++.
T Consensus       379 sGrG~kd~~~~~  390 (397)
T PRK04346        379 SGRGDKDVFTVA  390 (397)
T ss_pred             CCCCccCHHHHH
Confidence            999999999864

>PRK08639 threonine dehydratase; Validated

Probab=99.63  E-value=2.4e-15  Score=148.95  Aligned_cols=232  Identities=9%  Similarity=0.034  Sum_probs=143.1

Q ss_pred             HHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801        143 HRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS  220 (404)
Q Consensus       143 ~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~  220 (404)
                      ..+.+..+..+|+ .|+.||.+|.|  +|.|+.++.++.. .....||++|+||  +|.++|+.++..|+++++|+|+++
T Consensus        32 ~~ls~~~g~~l~~K~E~~~ptGSfK--~RgA~~~i~~l~~~~~~~~Vv~aSsGN--~g~alA~~a~~~G~~~~IvmP~~~  107 (420)
T PRK08639         32 DYLSEKYGANVYLKREDLQPVRSYK--LRGAYNAISQLSDEELAAGVVCASAGN--HAQGVAYACRHLGIPGVIFMPVTT  107 (420)
T ss_pred             HHHHHHhCCEEEEEecCCCCCCCcH--HHHHHHHHHhCCHHhhCCEEEEECccH--HHHHHHHHHHHcCCCEEEEECCCC
Confidence            3444444456777 99999999999  9999999988652 2344688999999  999999999999999999999987


Q ss_pred             cccccCCCCCCCCC----C-Cccc----------cccCCCCcccccccCccccCcEEecChHHHHHHHHHHHHhcCcEec
Q psy14801        221 ILAQPQSLNDVPEN----Q-ISYN----------EVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVG  285 (404)
Q Consensus       221 ~~~~~~~~~~~~~~----~-~~~~----------~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~  285 (404)
                      +......+...++.    . ....          .....+ .++..++++...-........|++++...-..-+.+++.
T Consensus       108 ~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~g-~~~~~~~~~~~~~~G~~tig~EI~eq~~~~~~~D~vv~~  186 (420)
T PRK08639        108 PQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEETG-ATFIPPFDDPDVIAGQGTVAVEILEQLEKEGSPDYVFVP  186 (420)
T ss_pred             hHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhcC-CcccCCCCChhHhcchhHHHHHHHHhccccCCCCEEEEe
Confidence            53221111111111    0 0000          000011 111222211111111223344444433210002558899


Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcc--------------c---ccc-----ch-hH-----HhhcCccCc
Q psy14801        286 GSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYL--------------T---KFI-----SD-EW-----MIEKGFLDE  337 (404)
Q Consensus       286 ~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~--------------~---~~~-----~~-~~-----~~~~~~~~~  337 (404)
                      .|||++++|+..++|+.+|+.+|+.|+|.+...+.              .   .++     ++ .+     ..|..+.++
T Consensus       187 vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~v~~~g~~~~~~~~~~vd~~v~V~  266 (420)
T PRK08639        187 VGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAVARVGDLTFEILKDVVDDVVLVP  266 (420)
T ss_pred             cChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeecccccCCccHHHHHHHHHhCCeEEEEC
Confidence            99999999999999999999999999997643210              0   111     11 11     223445677


Q ss_pred             HHHHHHh-------------ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhc
Q psy14801        338 AEELEEM-------------IHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK  381 (404)
Q Consensus       338 ~~~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~  381 (404)
                      ++++..+             .|+|+++++++++++++ ++++||+|+|. |...+++
T Consensus       267 d~ei~~a~~~l~~~~gi~~e~sga~~lAal~~~~~~~-~~~~vv~v~sG-gn~d~~~  321 (420)
T PRK08639        267 EGAVCTTILELYNKEGIVAEPAGALSIAALELYKDEI-KGKTVVCVISG-GNNDIER  321 (420)
T ss_pred             HHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhhc-CCCeEEEEeCC-CCCCHHH
Confidence            7766553             37777787777766555 78999999985 6666665

>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

Probab=99.62  E-value=2.9e-15  Score=154.00  Aligned_cols=226  Identities=13%  Similarity=0.049  Sum_probs=142.9

Q ss_pred             cEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcc-------
Q psy14801        152 AVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSIL-------  222 (404)
Q Consensus       152 ~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~-------  222 (404)
                      .+|+ .|+.||+||.|  +|.+..++..+.+ ..+.+|+++|+||  +|+++|+.++..|+++++++|.....       
T Consensus       348 ~IylK~E~lNpTGS~K--dR~Al~~i~~A~~~G~~~~IvetssGN--hG~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~  423 (695)
T PRK13802        348 RVFLKREDLNHTGAHK--INNALGQALLVKRMGKTRVIAETGAGQ--HGVATATVCAMLGLKCRIYMGQIDARRQALNVA  423 (695)
T ss_pred             eEEEEEccCCCcCCcH--HHHHHHHHHHHHHcCCCCEEEEECcHH--HHHHHHHHHHHcCCCEEEEEeCCcccccHHHHH
Confidence            5777 89999999999  9999998877753 2567899999999  99999999999999999999986421       


Q ss_pred             ---cccCCCCCCCCCCCc--c-------ccccCCCC-cccccccCc-----cccCcEEecChHHHHHHHHHHH---HhcC
Q psy14801        223 ---AQPQSLNDVPENQIS--Y-------NEVEGIGY-SFAATTLDR-----NVIDQWGKCGDKDTFLMARRLI---KSEG  281 (404)
Q Consensus       223 ---~~~~~~~~~~~~~~~--~-------~~~~~i~~-~~~~~~~~~-----~~~~~~~~v~d~e~~~~~~~l~---~~~g  281 (404)
                         ..+..+...+.....  .       ........ .++..+...     .++..+..+...|+++++.+..   .-+.
T Consensus       424 ~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~  503 (695)
T PRK13802        424 RMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDWYGIDHPDA  503 (695)
T ss_pred             HHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCE
Confidence               011111111000000  0       00000000 011111100     0112333344455555543210   1255


Q ss_pred             cEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC------------------------Cccccc-----c--------
Q psy14801        282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR------------------------NYLTKF-----I--------  324 (404)
Q Consensus       282 i~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~------------------------~~~~~~-----~--------  324 (404)
                      +|++.|||++++|+.+.+++ .++.+++.|++.+..                        .|+...     +        
T Consensus       504 VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~g~~~g~h~~~~~~g~g~~g~~~g~~~~~~~~~~g~~~~~~sis~g  582 (695)
T PRK13802        504 ICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGNGPESGKHAIRFAPGTGELGMFQGAKSYLLENDEGQTLDTYSISAG  582 (695)
T ss_pred             EEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCCCccccchhhhhhhccCCccccccceeecccCCCCCccCccccccc
Confidence            89999999999999999976 588999999986531                        111111     0        


Q ss_pred             ------ch--hHHhhcC----ccCcHHHHHH-------------hccchhHHHHHHHHHHhcCC----CCeEEEEEcCCC
Q psy14801        325 ------SD--EWMIEKG----FLDEAEELEE-------------MIHSGTAMHVACQAAKSLRP----DQRCVVILADGV  375 (404)
Q Consensus       325 ------~~--~~~~~~~----~~~~~~~~~~-------------g~SsGa~~~~a~~~~~~~~~----~~~iv~i~~D~g  375 (404)
                            +.  .++.+.+    ..++|++++.             +.|||+++++|+++++++++    +++||+++||+|
T Consensus       583 Ldy~gvgp~~~~l~~~~rv~~~~vtD~eal~a~~~La~~EGIipa~eS~hAva~a~~~a~~~~~~~~~~~~Vv~~lsg~G  662 (695)
T PRK13802        583 LDYASVGPEHAWLKDIGRVNYSWATDEEAMNAFKDLCETEGIIPAIESSHAVAGAYKAAADLKAKGYEHPVMIVNISGRG  662 (695)
T ss_pred             cCCCCCCchhHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCccccchHHHHHHHHHHHHHhcccccCCCCEEEEEECCCC
Confidence                  00  1111111    2367777665             34999999999999998754    569999999999


Q ss_pred             cchhhcc
Q psy14801        376 RNYLTKF  382 (404)
Q Consensus       376 ~rYl~~~  382 (404)
                      +||++++
T Consensus       663 dKdl~~~  669 (695)
T PRK13802        663 DKDMNTA  669 (695)
T ss_pred             cCCHHHH
Confidence            9999995

>PRK06110 hypothetical protein; Provisional

Probab=99.61  E-value=1.7e-15  Score=145.16  Aligned_cols=228  Identities=12%  Similarity=0.093  Sum_probs=143.3

Q ss_pred             HHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC--cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC
Q psy14801        143 HRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK--VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG  219 (404)
Q Consensus       143 ~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~--~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~  219 (404)
                      .++.+..+..+|+ +|+.||.||.|  +|.+..++.++..+  ....||++++||  +|+++|+.++..|+++++|+|.+
T Consensus        28 ~~l~~~~g~~i~~K~E~~nptGS~K--~Rga~~~l~~a~~~~~~~~~vv~aSsGN--~g~alA~~a~~~G~~~~ivvp~~  103 (322)
T PRK06110         28 PLLAERLGCEVWVKHENHTPTGAFK--VRGGLVYFDRLARRGPRVRGVISATRGN--HGQSVAFAARRHGLAATIVVPHG  103 (322)
T ss_pred             hhHHHHhCCeEEEEeccCCCcCCcH--HHHHHHHHHHhhhhcCCCceEEEECCCH--HHHHHHHHHHHcCCCEEEEEcCC
Confidence            3445444445776 99999999999  99999999888632  122478889999  99999999999999999999998


Q ss_pred             CcccccCCCCCCCCCCCc--cc----------cccCCCCcccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccc
Q psy14801        220 SILAQPQSLNDVPENQIS--YN----------EVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGS  287 (404)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~--~~----------~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~  287 (404)
                      .+......+.........  ..          .....+. ++..+++.... ..+.....|++++..+   -+.+|+..|
T Consensus       104 ~~~~k~~~i~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~-~G~~t~~~Ei~~q~~~---~D~vv~pvG  178 (322)
T PRK06110        104 NSVEKNAAMRALGAELIEHGEDFQAAREEAARLAAERGL-HMVPSFHPDLV-RGVATYALELFRAVPD---LDVVYVPIG  178 (322)
T ss_pred             CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCC-EEcCCCCChHH-hccchHHHHHHhhCCC---CCEEEEecC
Confidence            753211111111111000  00          0000011 11111111111 1223334444433321   145899999


Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEecCCCCCc-----------------ccccc----c-h-hH-----HhhcCccCcHH
Q psy14801        288 SGTAMHVACQAAKSLRPDQRCVVILADGVRNY-----------------LTKFI----S-D-EW-----MIEKGFLDEAE  339 (404)
Q Consensus       288 tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~-----------------~~~~~----~-~-~~-----~~~~~~~~~~~  339 (404)
                      ||++++|+.+.+++.+|+.+|++|+|.+...+                 +...+    . . .|     ..+..+.++|+
T Consensus       179 ~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~~~Vsd~  258 (322)
T PRK06110        179 MGSGICGAIAARDALGLKTRIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTPDPEALEVIRAGADRIVRVTDD  258 (322)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCccHHHHHHHHHhCCeEEEECHH
Confidence            99999999999999889999999999664211                 00111    0 0 11     22344667777


Q ss_pred             HHHHh-------------ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhc
Q psy14801        340 ELEEM-------------IHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK  381 (404)
Q Consensus       340 ~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~  381 (404)
                      +++++             .|+|+++++++++.+.+ ++++||+|+|. |.-.++.
T Consensus       259 e~~~a~~~l~~~~gi~~e~ssaa~laa~~~~~~~~-~~~~Vv~i~tG-gn~d~~~  311 (322)
T PRK06110        259 EVAAAMRAYFTDTHNVAEGAGAAALAAALQERERL-AGKRVGLVLSG-GNIDRAV  311 (322)
T ss_pred             HHHHHHHHHHHHcCcEEehHHHHHHHHHHhChhhh-CCCcEEEEECC-CCCCHHH
Confidence            77663             38889999998877664 68899999999 6666654

>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional

Probab=99.57  E-value=1.7e-14  Score=148.54  Aligned_cols=239  Identities=12%  Similarity=0.068  Sum_probs=146.3

Q ss_pred             HHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCc
Q psy14801        144 RIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI  221 (404)
Q Consensus       144 ~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~  221 (404)
                      ++++..+..+|+ .|..||+||.|  +|.+..++..+.+ .++.+|+++|+||  .|+++|+.++..|+++++++|....
T Consensus       279 ~Ls~~~G~~IylK~E~lnptGS~K--~r~al~~~~~a~~~g~~~vi~e~gsGn--hG~A~A~~aa~~Gl~~~I~m~~~~~  354 (610)
T PRK13803        279 RLSDIYGARIYLKREDLNHTGSHK--INNALGQALLAKRMGKTRIIAETGAGQ--HGVATATACALFGLKCTIFMGEEDI  354 (610)
T ss_pred             HHHHhhCCEEEEEeCCCCCcccHH--HHHHHHHHHHHHHcCCCEEEEecChHH--HHHHHHHHHHHcCCcEEEEEeCCcc
Confidence            444444446777 89999999988  8888877665442 3678899999999  9999999999999999999997742


Q ss_pred             cccc---CCCCCCCCCCCc-----ccc-------c----cCCCCc-cccccc-C----ccccCcEEecChHHHHHHHHHH
Q psy14801        222 LAQP---QSLNDVPENQIS-----YNE-------V----EGIGYS-FAATTL-D----RNVIDQWGKCGDKDTFLMARRL  276 (404)
Q Consensus       222 ~~~~---~~~~~~~~~~~~-----~~~-------~----~~i~~~-~~~~~~-~----~~~~~~~~~v~d~e~~~~~~~l  276 (404)
                      ....   ..+....+....     ...       .    ...... ++.... .    ..++..+..+...|+++++.+-
T Consensus       355 ~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~~tig~Ei~~Q~~~~  434 (610)
T PRK13803        355 KRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQ  434 (610)
T ss_pred             cchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHhhHHHHHHHHHHHHh
Confidence            1000   001111110000     000       0    000000 000000 0    0001112223344444443211


Q ss_pred             H--HhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC-------------------C---ccc-----------
Q psy14801        277 I--KSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR-------------------N---YLT-----------  321 (404)
Q Consensus       277 ~--~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~-------------------~---~~~-----------  321 (404)
                      .  .-+.+|++.|||++++|+...+++ .++.+++.|++.+..                   .   |+.           
T Consensus       435 ~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~  513 (610)
T PRK13803        435 TGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGSMTYLMQDENGQILEPH  513 (610)
T ss_pred             hCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeeccceeeeecccCCcccCCc
Confidence            0  124599999999999999998865 688999999997631                   0   000           


Q ss_pred             --------cccchhH--Hhh----cCccCcHHHHHHh-------------ccchhHHHHHHHHHHhcCCCCeEEEEEcCC
Q psy14801        322 --------KFISDEW--MIE----KGFLDEAEELEEM-------------IHSGTAMHVACQAAKSLRPDQRCVVILADG  374 (404)
Q Consensus       322 --------~~~~~~~--~~~----~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~  374 (404)
                              +.++...  +.+    ....++|+++..+             .|||++++++++++++++++++||+++||+
T Consensus       514 sia~gl~~~gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~~~La~~eGi~~~~ssa~alA~~~~~~~~~~~~~~Vvv~lsG~  593 (610)
T PRK13803        514 SISAGLDYPGIGPMHANLFETGRAIYTSVTDEEALDAFKLLAKLEGIIPALESSHALAYLKEGRKKFKKKDIVIVNLSGR  593 (610)
T ss_pred             eeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHHhchhcCCCCeEEEEeCCC
Confidence                    1111111  111    1245777776653             399999999999988888899999999999


Q ss_pred             CcchhhccCCHHHHH
Q psy14801        375 VRNYLTKFISDEWMI  389 (404)
Q Consensus       375 g~rYl~~~~~~~w~~  389 (404)
                      |+||++++  ..|+.
T Consensus       594 G~kd~~~~--~~~~~  606 (610)
T PRK13803        594 GDKDIPTL--KEYFE  606 (610)
T ss_pred             CcCCHHHH--HHHHh
Confidence            99999986  34553

>TIGR02079 THD1 threonine dehydratase

Probab=99.56  E-value=1.4e-14  Score=142.83  Aligned_cols=232  Identities=9%  Similarity=0.058  Sum_probs=140.9

Q ss_pred             HHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801        143 HRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS  220 (404)
Q Consensus       143 ~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~  220 (404)
                      ..+++..+..+|+ .|+.||.+|.|  +|.|+.++.++.. .....||++|+||  .|.++|+.++..|+++++|+|+..
T Consensus        23 ~~ls~~~g~~iy~K~E~~~ptGSfK--~RgA~~~i~~l~~~~~~~gvv~aSsGN--~g~a~A~~a~~~G~~~~iv~p~~~   98 (409)
T TIGR02079        23 ERLSEKYGANIYLKREDLQPVRSYK--IRGAYNFLKQLSDAQLAKGVVCASAGN--HAQGFAYACRHLGVHGTVFMPATT   98 (409)
T ss_pred             HHHHHHhCCEEEEEecCCCCCCCcH--HHHHHHHHHhCCHHhhCCEEEEECccH--HHHHHHHHHHHcCCCEEEEECCCC
Confidence            3445444456777 89999999999  9999999887642 2222488889999  999999999999999999999987


Q ss_pred             cccccCCCCCCCCCC-----CccccccC--CCCcccccccCccccCcEEecChHHHH-HHHHHHHHhc-----CcEeccc
Q psy14801        221 ILAQPQSLNDVPENQ-----ISYNEVEG--IGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSE-----GLLVGGS  287 (404)
Q Consensus       221 ~~~~~~~~~~~~~~~-----~~~~~~~~--i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~-----gi~~~~~  287 (404)
                      +......+...++..     ......+.  ....+. ......+++++.+....+.+ ..+.||+++.     .+++..|
T Consensus        99 ~~~k~~~~~~~GA~vv~v~~~g~~~~~a~~~a~~~~-~~~g~~~~~~~~~~~~~~g~~ti~~Ei~~q~~~~~D~vv~pvG  177 (409)
T TIGR02079        99 PKQKIDRVKIFGGEFIEIILVGDTFDQCAAAAREHV-EDHGGTFIPPFDDPRIIEGQGTVAAEILDQLPEKPDYVVVPVG  177 (409)
T ss_pred             CHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHH-HhcCCEEeCCCCCHhHhhhhHHHHHHHHHhcCCCCCEEEEEec
Confidence            532211111111110     00000000  000000 00001122222111111222 2345565543     4888999


Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcc--------------ccc--------cch-hH-----HhhcCccCcHH
Q psy14801        288 SGTAMHVACQAAKSLRPDQRCVVILADGVRNYL--------------TKF--------ISD-EW-----MIEKGFLDEAE  339 (404)
Q Consensus       288 tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~--------------~~~--------~~~-~~-----~~~~~~~~~~~  339 (404)
                      ||++++|+.+++|+++|+.+|+.|+|.+...+.              ++.        .++ .|     +.|..+.++|+
T Consensus       178 ~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~~~g~~~~~~~~~~vd~vv~V~d~  257 (409)
T TIGR02079       178 GGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVKRVGDLNFKALKDVPDEVTLVPEG  257 (409)
T ss_pred             HhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCCCCcHHHHHHHHHhCCcEEEECHH
Confidence            999999999999999999999999997642210              000        011 11     23444567777


Q ss_pred             HHHHh-------------ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhc
Q psy14801        340 ELEEM-------------IHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK  381 (404)
Q Consensus       340 ~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~  381 (404)
                      ++..+             .|+|++++|++++.++ .++++||+|+|. |.-.+++
T Consensus       258 e~~~a~~~l~~~~gi~ve~agaa~lAa~~~~~~~-~~~~~Vv~ilsG-gn~d~~~  310 (409)
T TIGR02079       258 AVCTTILDLYNLEGIVAEPAGALSIAALERLGEE-IKGKTVVCVVSG-GNNDIER  310 (409)
T ss_pred             HHHHHHHHHHHhcCceecchHHHHHHHHHhhhhh-cCCCeEEEEECC-CCCCHHH
Confidence            66553             3778888888877655 468999999996 5555544

This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.

>PLN02569 threonine synthase

Probab=99.54  E-value=4.4e-14  Score=141.07  Aligned_cols=234  Identities=14%  Similarity=0.073  Sum_probs=139.5

Q ss_pred             HHHHHHh-CC-CcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEE
Q psy14801        142 AHRIASQ-MK-NAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLV  213 (404)
Q Consensus       142 a~~l~~~-~~-~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi  213 (404)
                      +.++.+. .+ ..+|+ +|+.||++|.|  ||.+.-++..+..     .+...|++++|||  +|+++|+.++..|++++
T Consensus       139 ~~~l~~~~~G~~~l~~K~E~~nPTGSFK--DRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN--~GaAlAayaa~~Gl~~~  214 (484)
T PLN02569        139 AERLGKEFLGMNDLWVKHCGISHTGSFK--DLGMTVLVSQVNRLRKMAKPVVGVGCASTGD--TSAALSAYCAAAGIPSI  214 (484)
T ss_pred             hhhhhHhhcCCccEEEEECCCCCCcCHH--HHHHHHHHHHHHHhhhccCCccEEEEeCCcH--HHHHHHHHHHhcCCeEE
Confidence            3445544 32 24666 99999999999  9976655554431     2446789999999  89999999999999999


Q ss_pred             EEcCCC-CcccccCCCCCCCCCCCc-cccccC---CCCcccccccCccccCcEEecChHHHH-HHHHHHHHhcC------
Q psy14801        214 GADPFG-SILAQPQSLNDVPENQIS-YNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSEG------  281 (404)
Q Consensus       214 ~V~p~~-~~~~~~~~~~~~~~~~~~-~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~g------  281 (404)
                      ++.|++ .+......+....+.... ....++   +..... ......+.+++ +....|-+ ..+.||++|.+      
T Consensus       215 I~vP~~~~~~~k~~qi~a~GA~Vi~v~g~~d~a~~~a~e~~-~~~~~~~~n~~-Np~~ieG~kT~a~EI~eQl~~~~pD~  292 (484)
T PLN02569        215 VFLPADKISIAQLVQPIANGALVLSIDTDFDGCMRLIREVT-AELPIYLANSL-NSLRLEGQKTAAIEILQQFDWEVPDW  292 (484)
T ss_pred             EEEcCCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHH-HHcCCEecCCC-CcchhHhHHHHHHHHHHHcCCCCCCE
Confidence            999997 431111111111111000 000000   000000 00000111221 22233332 34556666553      


Q ss_pred             cEeccchhhHHHHHHHHHHhc------CCCCeEEEEecCCCCCcc----------c---------ccc--ch-----hHH
Q psy14801        282 LLVGGSSGTAMHVACQAAKSL------RPDQRCVVILADGVRNYL----------T---------KFI--SD-----EWM  329 (404)
Q Consensus       282 i~~~~~tg~tlag~~~~lk~~------~~~~~vv~v~~~~~~~~~----------~---------~~~--~~-----~~~  329 (404)
                      +++..|+|++++|+.+.++++      ++..++++|.+.+.....          .         ..+  +.     ..+
T Consensus       293 VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~a~~~G~~~~~~~~~~~T~A~gi~i~~P~~~~~~l  372 (484)
T PLN02569        293 VIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYRAYKSGWEEFKPVKANPTFASAIQIGDPVSIDRAV  372 (484)
T ss_pred             EEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHHHHHcCCCccccCCCCCccchhhccCCCccHHHHH
Confidence            888889999999999999875      234589999986531110          0         000  11     111


Q ss_pred             h-----hc-CccCcHHHHHHh------------ccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchhhc
Q psy14801        330 I-----EK-GFLDEAEELEEM------------IHSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLTK  381 (404)
Q Consensus       330 ~-----~~-~~~~~~~~~~~g------------~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl~~  381 (404)
                      .     +. ...++|+++..+            .|||++++++.++.++  +.++.+||+|++|+|.||.+.
T Consensus       373 ~al~~s~g~~v~VsDeEi~~a~~~a~~~Gi~vepssAaalAal~kl~~~g~i~~~~~VV~i~Tg~GlK~~~~  444 (484)
T PLN02569        373 YALKESNGIVEEATEEELMDAQAEADKTGMFLCPHTGVALAALKKLRASGVIGPTDRTVVVSTAHGLKFTQS  444 (484)
T ss_pred             HHHHHhCCEEEEECHHHHHHHHHHHHHCCcEECchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCcccChhH
Confidence            1     11 245666665442            3899999999998875  457889999999999999875

>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia

Probab=99.54  E-value=1.2e-14  Score=141.73  Aligned_cols=211  Identities=10%  Similarity=0.006  Sum_probs=126.9

Q ss_pred             CcEee-cCCCCC-CChhhHHhhHHHHHHHHhC-----C----CcC-----------------EEEEccCCChhHHHHHHH
Q psy14801        151 NAVVL-DQFRNP-NNPLSHYETTAEEILRDTG-----G----KVD-----------------MIVLGCGTGGTASGIGRK  202 (404)
Q Consensus       151 ~~~~~-~e~~np-~~si~g~~~~a~ei~~q~~-----~----~~~-----------------~vvv~~gsG~~~~Gi~la  202 (404)
                      ..+|+ +|+.|| +||.|  +|.|+.++.++.     +    .|+                 ..||+++|||  +|+++|
T Consensus        75 ~~v~~K~E~~nP~tGSfK--dRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~~~~~~~~VV~aSsGN--~G~alA  150 (404)
T cd06447          75 GRLLLKADSHLPISGSIK--ARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFRKLFSQYSIAVGSTGN--LGLSIG  150 (404)
T ss_pred             ceEEEEecCCCCCCCChH--HHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhhhcccCCEEEEECccH--HHHHHH
Confidence            35666 999999 89999  999999886531     1    133                 2799999999  999999


Q ss_pred             HHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCc---c-----ccccC----CCCcccccccCccccCcEEecChHHHH
Q psy14801        203 IKEKCPSCKLVGADPFGSILAQPQSLNDVPENQIS---Y-----NEVEG----IGYSFAATTLDRNVIDQWGKCGDKDTF  270 (404)
Q Consensus       203 ~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~---~-----~~~~~----i~~~~~~~~~~~~~~~~~~~v~d~e~~  270 (404)
                      +.++..|+++++|+|.+++......+.........   .     .....    .+..++..+.+..++-.++.....|++
T Consensus       151 ~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~~~~~a~~~a~~la~~~~~~~~v~~~n~~~~iaG~~T~g~EI~  230 (404)
T cd06447         151 IMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYETDYSKAVEEGRKQAAADPMCYFVDDENSRDLFLGYAVAASRLK  230 (404)
T ss_pred             HHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCeEeCCCCCchhHHhhHHHHHHHHH
Confidence            99999999999999998864322212111111100   0     00000    001111111111122222233333443


Q ss_pred             HHHHHHH-Hhc-----CcEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCCCCc------------ccccc-------
Q psy14801        271 LMARRLI-KSE-----GLLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGVRNY------------LTKFI-------  324 (404)
Q Consensus       271 ~~~~~l~-~~~-----gi~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~~~~------------~~~~~-------  324 (404)
                      ++...+. +.+     .+++..|+|++++|+.+++|+. +|+.+|+.|+|.+...+            ....+       
T Consensus       231 eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~~~~s~~ag~~~~~~~~~~g~~~~Ti  310 (404)
T cd06447         231 AQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCMLLGMATGLHDKISVQDIGIDNRTA  310 (404)
T ss_pred             HHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChHHHHHHHcCCCccccccccCCCccch
Confidence            3332110 001     2568889999999999999996 78999999998654221            00000       


Q ss_pred             ---------ch-h-----HHhhcCccCcHHHHHHh-------------ccchhHHHHHHHHHHhcCCCCe
Q psy14801        325 ---------SD-E-----WMIEKGFLDEAEELEEM-------------IHSGTAMHVACQAAKSLRPDQR  366 (404)
Q Consensus       325 ---------~~-~-----~~~~~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~  366 (404)
                               .+ .     ...|..+.++|+++.++             .|||++++++++++++. ++++
T Consensus       311 adGl~~~~p~~~~~~~~~~~vd~~v~Vsd~ei~~a~r~La~~~gi~vepSgAa~lAAl~~~~~~~-~~~~  379 (404)
T cd06447         311 ADGLAVGRPSGLVGKLMEPLLSGIYTVEDDELYRLLAMLKDSENIEVEPSAAAGFTGPAQVLSEA-EGKR  379 (404)
T ss_pred             hhhhcCCCcchhHHHHHHHhCCcEEEECHHHHHHHHHHHHHHcCcEEeHHHHHHHHHHHHHHHhh-hHHH
Confidence                     00 0     12344456788777663             39999999999998874 4433

D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.

>PRK08246 threonine dehydratase; Provisional

Probab=99.54  E-value=1.2e-14  Score=138.36  Aligned_cols=211  Identities=13%  Similarity=0.094  Sum_probs=129.3

Q ss_pred             CcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCC
Q psy14801        151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLN  229 (404)
Q Consensus       151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~  229 (404)
                      ..+|+ +|+.||++|.|  +|.++.++.++.. +...||+++|||  +|+++|+.++..|+++++|+|...+......+.
T Consensus        37 ~~i~~K~E~~nptGS~K--~R~a~~~~~~~~~-~~~~vv~aSsGN--~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~  111 (310)
T PRK08246         37 APVWLKLEHLQHTGSFK--ARGAFNRLLAAPV-PAAGVVAASGGN--AGLAVAYAAAALGVPATVFVPETAPPAKVARLR  111 (310)
T ss_pred             CEEEEEECCCCCCCCCH--HHHHHHHHHhhcc-cCCeEEEeCCCH--HHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHH
Confidence            45666 99999999999  9999999988764 566788889999  999999999999999999999886422111111


Q ss_pred             CCCCCCC--ccc------cccCC---CCcccccccCccccCcEEecChHHHHHHHHHHHHh----cCcEeccchhhHHHH
Q psy14801        230 DVPENQI--SYN------EVEGI---GYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKS----EGLLVGGSSGTAMHV  294 (404)
Q Consensus       230 ~~~~~~~--~~~------~~~~i---~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~----~gi~~~~~tg~tlag  294 (404)
                      .......  ...      ....+   ...++..++++.+.-..+.       .++.|+++|    +.+++..|||++++|
T Consensus       112 ~~GA~V~~~~~~~~~~~~~a~~~~~~~g~~~~~~~~n~~~i~g~~-------t~~~Ei~eq~~~~D~iv~~vG~GG~~~G  184 (310)
T PRK08246        112 ALGAEVVVVGAEYADALEAAQAFAAETGALLCHAYDQPEVLAGAG-------TLGLEIEEQAPGVDTVLVAVGGGGLIAG  184 (310)
T ss_pred             HCCCEEEEeCCCHHHHHHHHHHHHHhcCCEeCCCCCChhhhcchH-------HHHHHHHHhcCCCCEEEEecCccHHHHH
Confidence            1111100  000      00000   0011112221111111122       234555554    348899999999999


Q ss_pred             HHHHHHhcCCCCeEEEEecCCCCCcc------------cccc----------ch-hH-----HhhcCccCcHHHHHHh--
Q psy14801        295 ACQAAKSLRPDQRCVVILADGVRNYL------------TKFI----------SD-EW-----MIEKGFLDEAEELEEM--  344 (404)
Q Consensus       295 ~~~~lk~~~~~~~vv~v~~~~~~~~~------------~~~~----------~~-~~-----~~~~~~~~~~~~~~~g--  344 (404)
                      +.++++.   ..+|++|++.+...+.            ....          .. .|     ..+..+.++|+++..+  
T Consensus       185 i~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Vsd~e~~~a~~  261 (310)
T PRK08246        185 IAAWFEG---RARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVGEIAFALARAHVVTSVLVSDEAIIAARR  261 (310)
T ss_pred             HHHHhcC---CCEEEEEeeCCChHHHHHHHcCCcccCCCCCceeccccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHH
Confidence            9999864   3789999996642210            0000          00 11     1223355777776553  


Q ss_pred             -----------ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCc
Q psy14801        345 -----------IHSGTAMHVACQAAKSLRPDQRCVVILADGVR  376 (404)
Q Consensus       345 -----------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~  376 (404)
                                 .|+|++++++++...+..++++||+|+|+++-
T Consensus       262 ~l~~~egi~~e~s~aa~lAa~~~~~~~~~~~~~vv~i~~g~n~  304 (310)
T PRK08246        262 ALWEELRLAVEPGAATALAALLSGAYVPAPGERVAVVLCGANT  304 (310)
T ss_pred             HHHHHcCceeehHHHHHHHHHHhCCccccCCCeEEEEECCCCC
Confidence                       27777877766544333468899999999764

>PRK05638 threonine synthase; Validated

Probab=99.54  E-value=3.7e-14  Score=141.53  Aligned_cols=224  Identities=11%  Similarity=0.057  Sum_probs=138.1

Q ss_pred             CcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCC
Q psy14801        151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLN  229 (404)
Q Consensus       151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~  229 (404)
                      ..+|+ +|+.||++|.|  ||.+..++.++.......|++++|||  +|+++|+.++..|+++++++|.+.+......+.
T Consensus        80 ~~l~~K~E~~nPtGSfK--dR~a~~~i~~a~~~g~~~vv~aSsGN--~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~~  155 (442)
T PRK05638         80 ENVYIKDETRNPTGSFR--DRLATVAVSYGLPYAANGFIVASDGN--AAASVAAYSARAGKEAFVVVPRKVDKGKLIQMI  155 (442)
T ss_pred             CeEEEEeCCCCCCCChH--HHHHHHHHHHHHHcCCCEEEEeCCCh--HHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHH
Confidence            34666 99999999999  99999999877644344677799999  999999999999999999999986432111111


Q ss_pred             CCCCCCCc-cccccC---CCCcccccccCccccCcEEecChHHHH-HHHHHHHHh---cCcEeccchhhHHHHHHHHHHh
Q psy14801        230 DVPENQIS-YNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKS---EGLLVGGSSGTAMHVACQAAKS  301 (404)
Q Consensus       230 ~~~~~~~~-~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~---~gi~~~~~tg~tlag~~~~lk~  301 (404)
                      ........ ......   ..... .......+.+++.+....+-+ ..+.||+++   +.+|+..|+|++++|+.+.+++
T Consensus       156 ~~GA~vi~v~~~~~~~~~~a~~~-~~~~~~~~~~~~~np~~~eG~~t~a~Ei~eq~~pD~vv~pvG~Gg~~~Gi~~gfke  234 (442)
T PRK05638        156 AFGAKIIRYGESVDEAIEYAEEL-ARLNGLYNVTPEYNIIGLEGQKTIAFELWEEINPTHVIVPTGSGSYLYSIYKGFKE  234 (442)
T ss_pred             hcCcEEEEECCCHHHHHHHHHHH-HHhCCeEecCCCCChhHhhhHHHHHHHHHHHHCcCEEEEeCCchHHHHHHHHHHHH
Confidence            11111000 000000   00000 000011112222222223322 235566665   4599999999999999999998


Q ss_pred             cCCC------CeEEEEecCCCCCccc---------------------cccch---hHHhh---cCccCcHHHHHH-----
Q psy14801        302 LRPD------QRCVVILADGVRNYLT---------------------KFISD---EWMIE---KGFLDEAEELEE-----  343 (404)
Q Consensus       302 ~~~~------~~vv~v~~~~~~~~~~---------------------~~~~~---~~~~~---~~~~~~~~~~~~-----  343 (404)
                      +.+.      .++++|.+.+..++..                     +....   .++.+   ....++|+++..     
T Consensus       235 l~~~g~i~~~prii~Vq~~~~~p~~~~~~~~~~~~~~t~a~gl~~~~p~~~~~~~~~i~~~~g~~~~v~d~~i~~a~~~l  314 (442)
T PRK05638        235 LLEIGVIEEIPKLIAVQTERCNPIASEILGNKTKCNETKALGLYVKNPVMKEYVSEAIKESGGTAVVVNEEEIMAGEKLL  314 (442)
T ss_pred             HHhCCcccCCCeEEEEecCCCCHHHHHHhcCCCCCCCceeeeEeeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHH
Confidence            6542      4899999954322110                     00001   11211   123455555433     


Q ss_pred             -------hccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchh
Q psy14801        344 -------MIHSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYL  379 (404)
Q Consensus       344 -------g~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl  379 (404)
                             +.|||++++++.+++++  +.++++||++++|+|.|+.
T Consensus       315 ~~eGi~~epssaaa~Aa~~~~~~~g~i~~~~~Vv~i~tG~g~k~~  359 (442)
T PRK05638        315 AKEGIFAELSSAVVMPALLKLGEEGYIEKGDKVVLVVTGSGLKGY  359 (442)
T ss_pred             HhcCceecchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCC
Confidence                   34999999999999876  4678999999999999985

>PRK06381 threonine synthase; Validated

Probab=99.53  E-value=7.3e-14  Score=133.96  Aligned_cols=227  Identities=13%  Similarity=0.080  Sum_probs=135.0

Q ss_pred             HHHHHHhCC-CcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC
Q psy14801        142 AHRIASQMK-NAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG  219 (404)
Q Consensus       142 a~~l~~~~~-~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~  219 (404)
                      +.++.+..+ ..+|+ +|+.||++|.|  +|.+..++.++.++-...||++++||  +|+++|+.++..|+++++|+|..
T Consensus        21 ~~~l~~~~G~~~i~~K~E~~nptGS~K--~R~a~~~l~~a~~~g~~~lv~aSsGN--~g~alA~~aa~~G~~~~ivvp~~   96 (319)
T PRK06381         21 ARKLEEELGLRKIYLKFEGANPTGTQK--DRIAEAHVRRAMRLGYSGITVGTCGN--YGASIAYFARLYGLKAVIFIPRS   96 (319)
T ss_pred             hHhhHHhcCCceEEEEecCCCCccCcH--HHHHHHHHHHHHHcCCCEEEEeCCcH--HHHHHHHHHHHcCCcEEEEECCC
Confidence            344554443 34666 99999999999  99999999988743224567788999  99999999999999999999987


Q ss_pred             CcccccCCCCCCCCCCC---cccc-ccCCCCcccccccCccccCcEE-ec-ChHHH-HHHHHHHHHh-----cCcEeccc
Q psy14801        220 SILAQPQSLNDVPENQI---SYNE-VEGIGYSFAATTLDRNVIDQWG-KC-GDKDT-FLMARRLIKS-----EGLLVGGS  287 (404)
Q Consensus       220 ~~~~~~~~~~~~~~~~~---~~~~-~~~i~~~~~~~~~~~~~~~~~~-~v-~d~e~-~~~~~~l~~~-----~gi~~~~~  287 (404)
                      .+......+........   .... .......+. ......+.+++. +. ...+- ..++.||++|     +.+|+..|
T Consensus        97 ~~~~~~~~l~~~GA~V~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~ql~~~~D~vv~~vG  175 (319)
T PRK06381         97 YSNSRVKEMEKYGAEIIYVDGKYEEAVERSRKFA-KENGIYDANPGSVNSVVDIEAYSAIAYEIYEALGDVPDAVAVPVG  175 (319)
T ss_pred             CCHHHHHHHHHcCCEEEEcCCCHHHHHHHHHHHH-HHcCcEecCCCCCCcchHhhhHHHHHHHHHHHhCCCCCEEEEcCC
Confidence            64321111111111000   0000 000000000 000000001110 00 01111 1234455554     34889999


Q ss_pred             hhhHHHHHHHHHHhc------CCCCeEEEEecCCCCCc---------c-----c----------cc-----cchh----H
Q psy14801        288 SGTAMHVACQAAKSL------RPDQRCVVILADGVRNY---------L-----T----------KF-----ISDE----W  328 (404)
Q Consensus       288 tg~tlag~~~~lk~~------~~~~~vv~v~~~~~~~~---------~-----~----------~~-----~~~~----~  328 (404)
                      ||++++|+.+.+++.      ++..+|+.|.+.+....         .     .          +.     ++..    .
T Consensus       176 tGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  255 (319)
T PRK06381        176 NGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEPLVSYRSFDGDNALEA  255 (319)
T ss_pred             ccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCCcccccCCCHHHHHHH
Confidence            999999999999987      78899999998653211         0     0          00     0000    1


Q ss_pred             Hhh---cCccCcHHHHHHh-------------ccchhHHHHHHHHHHhcCCCCeEEEEEcC
Q psy14801        329 MIE---KGFLDEAEELEEM-------------IHSGTAMHVACQAAKSLRPDQRCVVILAD  373 (404)
Q Consensus       329 ~~~---~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D  373 (404)
                      +.+   ..+.++|++++++             .|||++++++++++++...+++||+++|=
T Consensus       256 ~~~~~g~~~~v~d~e~~~a~~~la~~egi~~epssa~alaa~~~~~~~~~~~~~vv~i~tG  316 (319)
T PRK06381        256 IYDSHGYAFGFSDDEMVKYAELLRRMEGLNALPASASALAALVKYLKKNGVNDNVVAVITG  316 (319)
T ss_pred             HHHcCCEEEEECHHHHHHHHHHHHHhCCcccCchHHHHHHHHHHHHHcCCCCCcEEEEecC
Confidence            122   3455777766553             38999999999998875446899999873

>PRK07591 threonine synthase; Validated

Probab=99.53  E-value=5.2e-14  Score=139.35  Aligned_cols=233  Identities=12%  Similarity=0.067  Sum_probs=140.9

Q ss_pred             HHHHHHhCC-CcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCC
Q psy14801        142 AHRIASQMK-NAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPF  218 (404)
Q Consensus       142 a~~l~~~~~-~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~  218 (404)
                      ..++.+..+ ..+|+ +|+.||++|.|  +|.+..++..+.+. .+ .|+++++||  +|+++|+.++..|+++++++|.
T Consensus        95 ~~~l~~~lG~~~l~~K~E~~nPtGSfK--dRga~~~v~~A~~~g~~-~vv~aSsGN--~g~alA~~aa~~Gl~~~I~vP~  169 (421)
T PRK07591         95 ADRLARELGLKNLYIKDDSVNPTHSFK--DRVVSVALTAARELGFT-TVACASTGN--LANSVAAHAARAGLDSCVFIPA  169 (421)
T ss_pred             hHHHHHHhCCCcEEEEeCCCCCccChH--HHHHHHHHHHHHHcCCC-EEEEeCCCH--HHHHHHHHHHHcCCCEEEEEcC
Confidence            345555443 25666 99999999999  99888888776533 34 456789999  9999999999999999999998


Q ss_pred             CCcccccCCCCCCCCCCC---cc-----ccccCCCCcccccccCccccCcEEecChHHHHHHHHHHHHh------cCcEe
Q psy14801        219 GSILAQPQSLNDVPENQI---SY-----NEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKS------EGLLV  284 (404)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~---~~-----~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~------~gi~~  284 (404)
                      +.+......+........   ..     ..+..+........+.+.+.+.++ +...  ...+.|+++|      +.+|+
T Consensus       170 ~~~~~k~~~~~~~GA~Vi~v~g~~d~a~~~a~~~~~~~~~~~~~n~~~~p~~-ieG~--~Tia~Ei~eQl~~~~pD~iv~  246 (421)
T PRK07591        170 DLEAGKIVGTLVYGPTLVAVDGNYDDVNRLCSELANEHEGWGFVNINLRPYY-AEGS--KTLGYEVAEQLGWRLPDQVVA  246 (421)
T ss_pred             CCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEEEecCCCCccc-ccch--HHHHHHHHHHcCCCCCCEEEE
Confidence            764211111111111100   00     000000000000000000111111 1000  1224444444      34888


Q ss_pred             ccchhhHHHHHHHHHHhc-------CCCCeEEEEecCCCCCcc--------------ccccchh--------------HH
Q psy14801        285 GGSSGTAMHVACQAAKSL-------RPDQRCVVILADGVRNYL--------------TKFISDE--------------WM  329 (404)
Q Consensus       285 ~~~tg~tlag~~~~lk~~-------~~~~~vv~v~~~~~~~~~--------------~~~~~~~--------------~~  329 (404)
                      ..|+|++++|+.+.++++       .+..+|++|++.+.....              ...+.+.              .+
T Consensus       247 pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g~~~~~~~~~~tia~~l~~~~p~~~~~~~~~i  326 (421)
T PRK07591        247 PLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAIGNPADGPYALDIA  326 (421)
T ss_pred             eCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHHcCCCcccCCCCCchhhheecCCCCCcHHHHHHH
Confidence            999999999999999986       577899999997632110              0111110              01


Q ss_pred             hh---cCccCcHHHHHHh-------------ccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchhhcc
Q psy14801        330 IE---KGFLDEAEELEEM-------------IHSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLTKF  382 (404)
Q Consensus       330 ~~---~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl~~~  382 (404)
                      .+   ..+.++|+++.++             .|||++++++++++++  +.++++||++++++|.+|+..+
T Consensus       327 ~~~~g~~v~Vsd~ei~~a~~~la~~eGi~~epssaaalAal~~l~~~g~i~~~~~VV~i~tG~G~kd~~~~  397 (421)
T PRK07591        327 RRTGGAIEDVTDEEIIEGIKLLARTEGIFTETAGGVTVAVLKKLVEAGKIDPDEETVVYITGNGLKTLEAV  397 (421)
T ss_pred             HHhCCEEEEECHHHHHHHHHHHHhcCCeeecchHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCccCCHHHH
Confidence            11   2345677776553             2889999999998874  6688999999999999998763

>PRK12391 tryptophan synthase subunit beta; Reviewed

Probab=99.52  E-value=4.6e-14  Score=138.96  Aligned_cols=233  Identities=10%  Similarity=-0.005  Sum_probs=137.1

Q ss_pred             cEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccc---ccC
Q psy14801        152 AVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILA---QPQ  226 (404)
Q Consensus       152 ~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~---~~~  226 (404)
                      .+|+ .|+.||.+|.|  +|.|..++..+.. ....+++++|+||  .|+++|+.++..|+++++++|..+...   ...
T Consensus        95 ~Iy~K~E~~nPtGS~K--~R~A~~~a~~a~~~G~~~~vtetgsGN--~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~r~~  170 (427)
T PRK12391         95 KIYYKYEGVSPTGSHK--PNTAVAQAYYNKKEGIKRLTTETGAGQ--WGSALALACALFGLECTVFMVRVSYEQKPYRRS  170 (427)
T ss_pred             eEEEEEcCCCCCCChH--HHHHHHHHHHHHHCCCCEEEEccCchH--HHHHHHHHHHHcCCcEEEEEecCCcccCHHHHH
Confidence            4665 99999999988  9999888755442 2457888999999  999999999999999999999743110   000


Q ss_pred             CCCCCCCCCCc-c---cc--------------------------ccCCCC-cccccccCccccCcEEecChHHHHHHHHH
Q psy14801        227 SLNDVPENQIS-Y---NE--------------------------VEGIGY-SFAATTLDRNVIDQWGKCGDKDTFLMARR  275 (404)
Q Consensus       227 ~~~~~~~~~~~-~---~~--------------------------~~~i~~-~~~~~~~~~~~~~~~~~v~d~e~~~~~~~  275 (404)
                      .+....+.... .   ..                          ....+. .+..... ..++..+..+...|+++++..
T Consensus       171 ~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~s~-~~~~~~~~~~ig~Ei~~Ql~~  249 (427)
T PRK12391        171 LMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALGSV-LNHVLLHQTVIGLEAKKQLEL  249 (427)
T ss_pred             HHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcCCC-CcHHHhhHHHHHHHHHHHHHh
Confidence            01111100000 0   00                          000000 0110000 001111222334555554432


Q ss_pred             HH-HhcCcEeccchhhHHHHHHH-HHHhc--C-CCCeEEEEecCCCCCccc-------------------cccchhHH--
Q psy14801        276 LI-KSEGLLVGGSSGTAMHVACQ-AAKSL--R-PDQRCVVILADGVRNYLT-------------------KFISDEWM--  329 (404)
Q Consensus       276 l~-~~~gi~~~~~tg~tlag~~~-~lk~~--~-~~~~vv~v~~~~~~~~~~-------------------~~~~~~~~--  329 (404)
                      .. .-+.++++.|+|++++|+.. +++..  . ++.+|++|++.+...+..                   ..++.+++  
T Consensus       250 ~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~~~~gd~~~~~p~~~~~~lG~~~~p~  329 (427)
T PRK12391        250 AGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKGEYAYDFGDTAGLTPLLKMYTLGHDFVPP  329 (427)
T ss_pred             cCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhccccccccccccccCCccceeEecCCCCCCc
Confidence            21 12458888999999999997 44432  4 778999999965421100                   01111110  


Q ss_pred             -------------------hh----cCccCcHHHHHHhc-------------cchhHHHHHHHHHHhcC-CCCeEEEEEc
Q psy14801        330 -------------------IE----KGFLDEAEELEEMI-------------HSGTAMHVACQAAKSLR-PDQRCVVILA  372 (404)
Q Consensus       330 -------------------~~----~~~~~~~~~~~~g~-------------SsGa~~~~a~~~~~~~~-~~~~iv~i~~  372 (404)
                                         .+    +...++++++++++             |||++++++++++++.. .++..+++++
T Consensus       330 ~~~a~gl~~~g~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss~~alaaa~~~a~~~~~~~~~~~iv~~  409 (427)
T PRK12391        330 PIHAGGLRYHGMAPLVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVPAPESSHAIAAAIDEALKAKEEGEEKVILFN  409 (427)
T ss_pred             cccccccccCCchHHHHHHHhcCceEEEEECHHHHHHHHHHHHHHcCCeechHHHHHHHHHHHHHHhccccCCCCEEEEE
Confidence                               11    12346777776643             99999999999987632 3445677888


Q ss_pred             CCCcchhhccCCHHHHH
Q psy14801        373 DGVRNYLTKFISDEWMI  389 (404)
Q Consensus       373 D~g~rYl~~~~~~~w~~  389 (404)
                      ++|.+|++....++|+.
T Consensus       410 lsG~G~~d~~~y~~~l~  426 (427)
T PRK12391        410 LSGHGLLDLAAYDAYLA  426 (427)
T ss_pred             eCCCCCCCHHHHHHHhc
Confidence            99999999855566763

>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form

Probab=99.52  E-value=7.9e-14  Score=140.23  Aligned_cols=231  Identities=11%  Similarity=0.072  Sum_probs=142.5

Q ss_pred             HHHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC
Q psy14801        142 AHRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG  219 (404)
Q Consensus       142 a~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~  219 (404)
                      +.++++..+..+|+ .|..||.+|.|  +|.|+.++.++... ...-||++++||  .|.++|+.++..|+++++|+|.+
T Consensus        23 ~~~Ls~~~g~~i~lK~E~lqptgSfK--~RgA~n~i~~l~~~~~~~gVV~aSaGN--ha~~vA~aa~~~Gi~~~IvmP~~   98 (499)
T TIGR01124        23 AAKLSERLGNRILIKREDLQPVFSFK--LRGAYNKMAQLSPEQKARGVIAASAGN--HAQGVAFSAARLGLKALIVMPET   98 (499)
T ss_pred             hHHHHHHhCCEEEEEecCCCCCCCCH--HHHHHHHHHHhhHHhcCCEEEEECCCH--HHHHHHHHHHHcCCCEEEEECCC
Confidence            44555555556777 89999999999  99999999877421 112467789999  88899999999999999999998


Q ss_pred             CcccccCCCCCCCCCCCc-cccccC---CCCcccccccCccccCcEEecChHHHH-HHHHHHHHhc-----CcEeccchh
Q psy14801        220 SILAQPQSLNDVPENQIS-YNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSE-----GLLVGGSSG  289 (404)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~-~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~-----gi~~~~~tg  289 (404)
                      ++......+...+..... ......   ....+ .......++.++.+....+.+ ..+.||+++.     .+++..|||
T Consensus        99 tp~~Kv~~~r~~GA~Vvl~g~~~d~a~~~a~~l-a~~~g~~~i~p~~~~~~i~G~gtig~EI~~q~~~~~D~vvvpvGgG  177 (499)
T TIGR01124        99 TPDIKVDAVRGFGGEVVLHGANFDDAKAKAIEL-SQEKGLTFIHPFDDPLVIAGQGTLALEILRQVANPLDAVFVPVGGG  177 (499)
T ss_pred             CCHHHHHHHHhCCCEEEEeCcCHHHHHHHHHHH-HHhcCCEeeCCCCChHHHHhhHHHHHHHHHhCCCCCCEEEEccCcc
Confidence            764221111111111000 000000   00000 000011122222111111112 2345666654     388889999


Q ss_pred             hHHHHHHHHHHhcCCCCeEEEEecCCCCCc-----------cc------ccc-----ch-hH-----HhhcCccCcHHHH
Q psy14801        290 TAMHVACQAAKSLRPDQRCVVILADGVRNY-----------LT------KFI-----SD-EW-----MIEKGFLDEAEEL  341 (404)
Q Consensus       290 ~tlag~~~~lk~~~~~~~vv~v~~~~~~~~-----------~~------~~~-----~~-~~-----~~~~~~~~~~~~~  341 (404)
                      ++++|+..++|+..|+.+|+.|+|.+...+           +.      .++     +. .|     ..|..+.++++++
T Consensus       178 GliaGia~~lk~~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g~~~~~~~~~~vd~vv~V~d~ei  257 (499)
T TIGR01124       178 GLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETFRLCQQYLDDIVTVDTDEV  257 (499)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCceeCCCCCCccCcccCCCccHHHHHHHHHhCCEEEEECHHHH
Confidence            999999999999999999999999654211           00      011     11 11     2344566777766


Q ss_pred             HHh-------------ccchhHHHHHHHHHHhcC-CCCeEEEEEcCCCcc
Q psy14801        342 EEM-------------IHSGTAMHVACQAAKSLR-PDQRCVVILADGVRN  377 (404)
Q Consensus       342 ~~g-------------~SsGa~~~~a~~~~~~~~-~~~~iv~i~~D~g~r  377 (404)
                      ..+             .|+|++++++++++++.. ++++||+|+|.++..
T Consensus       258 ~~ai~~l~~~~gii~EpagA~~lAal~~~~~~~~~~~~~vv~i~sG~n~~  307 (499)
T TIGR01124       258 CAAIKDLFEDTRAVAEPAGALALAGLKKYVALHGIRGQTLVAILSGANMN  307 (499)
T ss_pred             HHHHHHHHHhcCcEEechHHHHHHHHHHhhhhcCCCCCeEEEEECCCCCC
Confidence            553             288888998888876632 588999999998753

Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.

>PRK08206 diaminopropionate ammonia-lyase; Provisional

Probab=99.50  E-value=1.7e-13  Score=134.75  Aligned_cols=239  Identities=13%  Similarity=0.084  Sum_probs=133.7

Q ss_pred             HHHHHhCC-CcEee-cCCC-CCCChhhHHhhHHH-----HHHHHhCCC------------------cCEEEEccCCChhH
Q psy14801        143 HRIASQMK-NAVVL-DQFR-NPNNPLSHYETTAE-----EILRDTGGK------------------VDMIVLGCGTGGTA  196 (404)
Q Consensus       143 ~~l~~~~~-~~~~~-~e~~-np~~si~g~~~~a~-----ei~~q~~~~------------------~~~vvv~~gsG~~~  196 (404)
                      .++.+..+ ..+|+ +|.. ||.+|.|  +|-+.     -+.+++..+                  ++.+|+++++||  
T Consensus        51 ~~l~~~~G~~~v~~K~E~~q~ptgSFK--~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~aSsGN--  126 (399)
T PRK08206         51 PDLAAELGVGSILVKDESYRFGLNAFK--ALGGAYAVARLLAEKLGLDISELSFEELTSGEVREKLGDITFATATDGN--  126 (399)
T ss_pred             HHHHHHhCCCcEEEecccCcCCCCChH--HhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHHHHhccCCEEEEeCCcH--
Confidence            34554444 25666 8886 7999999  77433     222333221                  345789999999  


Q ss_pred             HHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCc--cc------ccc----CCCCccccc----ccCc--ccc
Q psy14801        197 SGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQIS--YN------EVE----GIGYSFAAT----TLDR--NVI  258 (404)
Q Consensus       197 ~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~--~~------~~~----~i~~~~~~~----~~~~--~~~  258 (404)
                      +|+++|+.++..|+++++|+|...+......+.........  ..      .+.    ..+..+...    +++.  .+.
T Consensus       127 ~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~~~~~~~~~a~~~~~~~g~~~v~~~~~~~~~~~~~~~  206 (399)
T PRK08206        127 HGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDGNYDDSVRLAAQEAQENGWVVVQDTAWEGYEEIPTWI  206 (399)
T ss_pred             HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHHcCCEEecCccccCcccccHHH
Confidence            99999999999999999999998753211111111111000  00      000    001000000    1110  111


Q ss_pred             CcEEecChHHHHHHHHHHH-HhcCcEeccchhhHHHHHHHHHHhcC--CCCeEEEEecCCCCCc----------ccc---
Q psy14801        259 DQWGKCGDKDTFLMARRLI-KSEGLLVGGSSGTAMHVACQAAKSLR--PDQRCVVILADGVRNY----------LTK---  322 (404)
Q Consensus       259 ~~~~~v~d~e~~~~~~~l~-~~~gi~~~~~tg~tlag~~~~lk~~~--~~~~vv~v~~~~~~~~----------~~~---  322 (404)
                      ..++.....|+++++.... .-+.+|+..|||++++|+.++++++.  +..+|++|+|.+...+          ..+   
T Consensus       207 ~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs~~l~~s~~~g~~~~~~~~~  286 (399)
T PRK08206        207 MQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQADCLYQSAVDGKPVAVTGDM  286 (399)
T ss_pred             HHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCCCchHHHHHHcCCcEEeCCCC
Confidence            1222333344443332100 02458888899999999999999873  4789999999664221          000   


Q ss_pred             -ccchh----------H-----HhhcCccCcHHHHHHh-----------------ccchhHHHHHHHHHH----------
Q psy14801        323 -FISDE----------W-----MIEKGFLDEAEELEEM-----------------IHSGTAMHVACQAAK----------  359 (404)
Q Consensus       323 -~~~~~----------~-----~~~~~~~~~~~~~~~g-----------------~SsGa~~~~a~~~~~----------  359 (404)
                       .+.+.          |     ..+..+.++|+++..+                 .|||++++++++++.          
T Consensus       287 ~tia~gl~~~~~~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vepsgAa~lAa~~~~~~~~~~~~~~~~  366 (399)
T PRK08206        287 DTIMAGLACGEPNPLAWEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGESGAVGLGALAALMTDPDYQELREK  366 (399)
T ss_pred             CceeccCCCCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecchHHHHHHHHHHHHhcchhhHHHHh
Confidence             01111          1     1233455777665431                 277788888876541          


Q ss_pred             -hcCCCCeEEEEEcCCC---cchhhccCCH
Q psy14801        360 -SLRPDQRCVVILADGV---RNYLTKFISD  385 (404)
Q Consensus       360 -~~~~~~~iv~i~~D~g---~rYl~~~~~~  385 (404)
                       .+.++++||+|+||+.   ++|.+.++|+
T Consensus       367 ~~i~~~~~Vv~iltgG~~d~~~~~~~~~~~  396 (399)
T PRK08206        367 LGLDEDSRVLLISTEGDTDPDRYREIVWEG  396 (399)
T ss_pred             cCCCCCCEEEEEECCCCCCHHHHHHHhcCC
Confidence             2356899999999642   6666666554

>PRK07476 eutB threonine dehydratase; Provisional

Probab=99.49  E-value=8.9e-14  Score=133.34  Aligned_cols=165  Identities=13%  Similarity=0.041  Sum_probs=103.2

Q ss_pred             HHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCc
Q psy14801        144 RIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI  221 (404)
Q Consensus       144 ~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~  221 (404)
                      ++.+..+..+|+ +|+.||++|.|  +|.+..++.++.++ .+.-||++++||  +|+++|+.++..|+++++|+|+..+
T Consensus        27 ~l~~~~g~~l~~K~E~~nptGS~K--~R~a~~~i~~a~~~~~~~gvv~aSsGN--~g~alA~~a~~~G~~~~i~vp~~~~  102 (322)
T PRK07476         27 SLSARAGVPVWLKLETLQPTGSFK--LRGATNALLSLSAQERARGVVTASTGN--HGRALAYAARALGIRATICMSRLVP  102 (322)
T ss_pred             hhHHhhCCeEEEEEccCCCCCCch--HHHHHHHHHhhhhhhhCCeEEEECCCh--HHHHHHHHHHHhCCCEEEEeCCCCC
Confidence            344444445777 99999999999  99999999887642 233377889999  9999999999999999999999875


Q ss_pred             ccccCCCCCCCCCCCc--c----------ccccCCCCcccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchh
Q psy14801        222 LAQPQSLNDVPENQIS--Y----------NEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSG  289 (404)
Q Consensus       222 ~~~~~~~~~~~~~~~~--~----------~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg  289 (404)
                      ......+.........  .          ......+. ++..++++...-+.+.....|++++...   .+.+|+..|||
T Consensus       103 ~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~g~-~~~~~~~n~~~~~g~~t~~~Ei~~Q~~~---~d~iv~~vG~G  178 (322)
T PRK07476        103 ANKVDAIRALGAEVRIVGRSQDDAQAEVERLVREEGL-TMVPPFDDPRIIAGQGTIGLEILEALPD---VATVLVPLSGG  178 (322)
T ss_pred             HHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCC-EEeCCCCCcceeechhHHHHHHHHhCcC---CCEEEEEcChH
Confidence            3211111111111000  0          00000111 1112221111111122333333333221   23489999999


Q ss_pred             hHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14801        290 TAMHVACQAAKSLRPDQRCVVILADGV  316 (404)
Q Consensus       290 ~tlag~~~~lk~~~~~~~vv~v~~~~~  316 (404)
                      ++++|+.+.+|+..|+.+|++|++.+.
T Consensus       179 G~~~Gv~~~~k~~~~~~~vigVe~~~~  205 (322)
T PRK07476        179 GLASGVAAAVKAIRPAIRVIGVSMERG  205 (322)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEEECCc
Confidence            999999999999999999999999653

>PRK06260 threonine synthase; Validated

Probab=99.49  E-value=1.4e-13  Score=135.65  Aligned_cols=224  Identities=11%  Similarity=0.024  Sum_probs=136.3

Q ss_pred             cEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC-CcccccCCCC
Q psy14801        152 AVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG-SILAQPQSLN  229 (404)
Q Consensus       152 ~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~-~~~~~~~~~~  229 (404)
                      .+|+ +|+.||++|.|  ||.+..++.++.+.-...||+++|||  +|+++|+.++..|+++++++|.+ .+......+.
T Consensus        84 ~l~~K~E~~nPTGSfK--dRga~~~v~~a~~~g~~~vv~aSsGN--~g~alA~~aa~~G~~~~i~vP~~~~~~~k~~~~~  159 (397)
T PRK06260         84 ELYVKHEGANPTGSFK--DRGMTVGVTKALELGVKTVACASTGN--TSASLAAYAARAGLKCYVLLPAGKVALGKLAQAL  159 (397)
T ss_pred             cEEEEeCCCCCCcCcH--HHHHHHHHHHHHHcCCCEEEEeCCcH--HHHHHHHHHHHcCCcEEEEEeCCCccHHHHHHHH
Confidence            4666 99999999999  99999888877543223677889999  89999999999999999999987 3321111111


Q ss_pred             CCCCCCC---cc-----ccccCC---CCcccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHH
Q psy14801        230 DVPENQI---SY-----NEVEGI---GYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQA  298 (404)
Q Consensus       230 ~~~~~~~---~~-----~~~~~i---~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~  298 (404)
                      .......   ..     ..+..+   ...+...+++..... .+.....|++++... -.-+.+|+..|+|++++|+.+.
T Consensus       160 ~~GA~vi~v~~~~~~~~~~a~~~~~~~g~y~~~~~np~~~~-G~~t~a~Ei~eQl~~-~~pd~vvvpvG~Gg~~~Gi~~~  237 (397)
T PRK06260        160 LHGAKVLEVDGNFDDALDMVVELAKEGKIYLLNSINPFRLE-GQKTIGFEIADQLGW-EVPDRVVLPVGNAGNISAIWKG  237 (397)
T ss_pred             hcCCEEEEECCcHHHHHHHHHHHHhhCCEEeecCCCchhhc-chhhHHHHHHHHhCC-CCCCEEEEeCCcHHHHHHHHHH
Confidence            1111000   00     000000   001111122211111 123334444433321 0124588999999999999999


Q ss_pred             HHhcC------CCCeEEEEecCCCCCc----------c-----cc----c--cc-----h-h--HHh---hcCccCcHHH
Q psy14801        299 AKSLR------PDQRCVVILADGVRNY----------L-----TK----F--IS-----D-E--WMI---EKGFLDEAEE  340 (404)
Q Consensus       299 lk~~~------~~~~vv~v~~~~~~~~----------~-----~~----~--~~-----~-~--~~~---~~~~~~~~~~  340 (404)
                      ++++.      +-.++++|++.+....          .     ..    .  ++     . .  .+.   +..+.++|++
T Consensus       238 ~~~l~~~G~i~~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i~i~~p~~~~~~~~~l~~~~g~~v~V~d~e  317 (397)
T PRK06260        238 FKELVELGIIDKLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVATAIRIGNPVNAPKALRAIRESGGTAEAVSDEE  317 (397)
T ss_pred             HHHHHhcCCcCCCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceeeeeEeCCCCCHHHHHHHHHHHCCEEEEECHHH
Confidence            98864      2358999998653211          0     00    0  00     0 0  121   1235577776


Q ss_pred             HHHh-------------ccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchhhc
Q psy14801        341 LEEM-------------IHSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLTK  381 (404)
Q Consensus       341 ~~~g-------------~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl~~  381 (404)
                      +..+             .|||++++++.+++++  +.++++||++++++|.|..+.
T Consensus       318 ~~~a~~~la~~eGi~vepssaaalAa~~~l~~~g~i~~~~~VV~i~tG~glK~~~~  373 (397)
T PRK06260        318 ILDAQKLLARKEGIGVEPASAASVAGLIKLVEEGVIDKDERVVCITTGHLLKDPDA  373 (397)
T ss_pred             HHHHHHHHHHhCCCeeCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccCchHH
Confidence            6553             3889999999998876  457899999999999887654

>PRK08329 threonine synthase; Validated

Probab=99.49  E-value=1.8e-13  Score=132.47  Aligned_cols=223  Identities=13%  Similarity=0.077  Sum_probs=135.4

Q ss_pred             cEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCC
Q psy14801        152 AVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLND  230 (404)
Q Consensus       152 ~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~  230 (404)
                      .+|+ +|+.||++|.|  ||.+..++.++.+.-...||++++||  +|.++|+.++..|+++++++|.+.+......+..
T Consensus        73 ~l~~K~E~~nPtGSfK--dRga~~~i~~a~~~g~~~vv~aSsGN--~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~  148 (347)
T PRK08329         73 KVYFKLDYLQPTGSFK--DRGTYVTVAKLKEEGINEVVIDSSGN--AALSLALYSLSEGIKVHVFVSYNASKEKISLLSR  148 (347)
T ss_pred             eEEEEeCCCCCCcCCH--HHHHHHHHHHHHHcCCCEEEEECCCc--HHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHH
Confidence            4665 89999999999  99999998877643224677788999  9999999999999999999998874321111111


Q ss_pred             CCCCCC---ccc-cccCCCCcccccccCccccCcEEecChHHH-HHHHHHHHHh----cCcEeccchhhHHHHHHHHHHh
Q psy14801        231 VPENQI---SYN-EVEGIGYSFAATTLDRNVIDQWGKCGDKDT-FLMARRLIKS----EGLLVGGSSGTAMHVACQAAKS  301 (404)
Q Consensus       231 ~~~~~~---~~~-~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~-~~~~~~l~~~----~gi~~~~~tg~tlag~~~~lk~  301 (404)
                      ......   ... ........+ .......+..++.+....|- ...+.||++|    +.+++..|||++++|+.+.+++
T Consensus       149 ~GA~v~~v~~~~~~~~~~a~~l-~~~~~~~~~~~~~np~~~eG~~t~~~Ei~eql~~pD~vvvpvG~Gg~l~Gi~~g~ke  227 (347)
T PRK08329        149 LGAELHFVEGDRMEVHEEAVKF-SKRNNIPYVSHWLNPYFLEGTKTIAYEIYEQIGVPDYAFVPVGSGTLFLGIWKGFKE  227 (347)
T ss_pred             cCCEEEEECCCHHHHHHHHHHH-HHhcCCeeccCCCCchhhccchhHHHHHHHHcCCCCEEEEeCCcHHHHHHHHHHHHH
Confidence            111000   000 000000000 00000001111111111111 1234455554    3488999999999999999998


Q ss_pred             cC------CCCeEEEEecCCCCCcc---------ccccc--------h--hHHhhc---CccCcHHHHHHh---------
Q psy14801        302 LR------PDQRCVVILADGVRNYL---------TKFIS--------D--EWMIEK---GFLDEAEELEEM---------  344 (404)
Q Consensus       302 ~~------~~~~vv~v~~~~~~~~~---------~~~~~--------~--~~~~~~---~~~~~~~~~~~g---------  344 (404)
                      +.      +..++++|.+.+.....         ...+.        +  ..+.+.   .+.++|+++.++         
T Consensus       228 l~~~g~i~~~p~ii~Vq~~g~~~~~~~~~~~~t~a~gi~i~~~~~~~~~~~~l~~~~g~~~~V~d~e~~~a~~~l~~~Gi  307 (347)
T PRK08329        228 LHEMGEISKMPKLVAVQAEGYESLCKRSKSENKLADGIAIPEPPRKEEMLRALEESNGFCISVGEEETRAALHWLRRMGF  307 (347)
T ss_pred             HHhcCCCCCCCEEEEEecCCCchHHhccCCCCceeeeEEeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCc
Confidence            63      45689999997632211         01110        0  112221   245677666552         


Q ss_pred             ---ccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchh
Q psy14801        345 ---IHSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYL  379 (404)
Q Consensus       345 ---~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl  379 (404)
                         .|||++++++.+++++  +.++++||++++=+|.|+|
T Consensus       308 ~vepssa~a~Aa~~~l~~~g~i~~~~~Vv~~~TG~glK~~  347 (347)
T PRK08329        308 LVEPTSAVALAAYWKLLEEGLIEGGSKVLLPLSGSGLKNL  347 (347)
T ss_pred             eECccHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCCccCC
Confidence               3899999999999886  5678999999999998875

>PRK08526 threonine dehydratase; Provisional

Probab=99.49  E-value=6.9e-14  Score=137.39  Aligned_cols=223  Identities=15%  Similarity=0.150  Sum_probs=134.7

Q ss_pred             HHHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC--cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCC
Q psy14801        142 AHRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK--VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPF  218 (404)
Q Consensus       142 a~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~--~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~  218 (404)
                      ..++++..+..+|+ +|+.||++|.|  +|.|+.++.++...  .. -||++++||  .|.++|+.++..|+++++|+|.
T Consensus        26 ~~~Ls~~~g~~iylK~E~lqptGSfK--~RgA~n~i~~l~~~~~~~-gVV~aSaGN--hg~avA~aa~~~Gi~~~IvmP~  100 (403)
T PRK08526         26 APFLSKISGAEVYLKKENLQITGAYK--IRGAYNKIANLSEEQKQH-GVIAASAGN--HAQGVAISAKKFGIKAVIVMPE  100 (403)
T ss_pred             hHHHHHHhCCeEEEEecCCCCCCCCH--HHHHHHHHHhccHhhcCC-EEEEECccH--HHHHHHHHHHHcCCCEEEEEcC
Confidence            34455544456777 99999999999  99999999877632  33 367899999  8999999999999999999999


Q ss_pred             CCcccccCCCCCCCCCCCc-cccccC---CCCcccccccCccccCcEEecChHHHH----HHHHHHHHhc----CcEecc
Q psy14801        219 GSILAQPQSLNDVPENQIS-YNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF----LMARRLIKSE----GLLVGG  286 (404)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~-~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~----~~~~~l~~~~----gi~~~~  286 (404)
                      +.+......+....+.... ......   ....+ .......+++++   +|+..+    ..+.||+++.    .+++..
T Consensus       101 ~~p~~k~~~~r~~GA~Vv~~g~~~~~a~~~a~~~-a~~~g~~~v~p~---~~~~~i~G~gtia~EI~eq~~~~D~vvvpv  176 (403)
T PRK08526        101 ATPLLKVSGTKALGAEVILKGDNYDEAYAFALEY-AKENNLTFIHPF---EDEEVMAGQGTIALEMLDEISDLDMVVVPV  176 (403)
T ss_pred             CCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHH-HHhcCCEeeCCC---CCHHHHhhhHHHHHHHHHhcCCCCEEEEec
Confidence            8753221111111111000 000000   00000 000001111221   122221    2345666653    488999


Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcc--------------cc---ccc-----h---h---HHhhcCccCcH
Q psy14801        287 SSGTAMHVACQAAKSLRPDQRCVVILADGVRNYL--------------TK---FIS-----D---E---WMIEKGFLDEA  338 (404)
Q Consensus       287 ~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~--------------~~---~~~-----~---~---~~~~~~~~~~~  338 (404)
                      |||++++|+..++|+.+|+.+|+.|+|.+...+.              .+   ++.     .   .   ...|..+.++|
T Consensus       177 GgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~~~~~~~~~~~~vd~~v~V~d  256 (403)
T PRK08526        177 GGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDASPINLAIILECVDDFVQVDD  256 (403)
T ss_pred             ChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHHHHHHcCCcccCCCCCceeccccCCCCCHHHHHHHHHhCCEEEEECH
Confidence            9999999999999999999999999997653220              00   110     1   0   12344456777


Q ss_pred             HHHHHhc-------------cchhHHHHHHHHHHhcCCCCeEEEEEcC
Q psy14801        339 EELEEMI-------------HSGTAMHVACQAAKSLRPDQRCVVILAD  373 (404)
Q Consensus       339 ~~~~~g~-------------SsGa~~~~a~~~~~~~~~~~~iv~i~~D  373 (404)
                      +++..++             |+++++++.++....+.++++||+|+|=
T Consensus       257 ~ei~~A~~~l~~~~gi~ve~aga~~lAall~~~~~~~~~~~Vv~ilsG  304 (403)
T PRK08526        257 EEIANAILFLLEKQKIVVEGAGAASVAALLHQKIDLKKGKKIGVVLSG  304 (403)
T ss_pred             HHHHHHHHHHHHhcCcEeeHHHHHHHHHHHhCccccccCCeEEEEECC
Confidence            7665532             5566666665433334568899999975

>TIGR02991 ectoine_eutB ectoine utilization protein EutB

Probab=99.48  E-value=1.5e-13  Score=131.21  Aligned_cols=226  Identities=12%  Similarity=0.079  Sum_probs=133.3

Q ss_pred             HHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCc
Q psy14801        144 RIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI  221 (404)
Q Consensus       144 ~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~  221 (404)
                      ++.+..+..+|+ +|+.||.+|.|  +|.+..++.++.. .....||++++||  +|+++|+.++..|+++++++|...+
T Consensus        27 ~l~~~~g~~l~~K~E~~nptGS~K--~R~a~~~i~~~~~~~~~~~vv~aSsGN--~g~alA~~a~~~G~~~~v~~p~~~~  102 (317)
T TIGR02991        27 SLSELCGVPVHLKLEHRQTTGSFK--LRGATNAVLSLSDTQRAAGVVAASTGN--HGRALAYAAAEEGVRATICMSELVP  102 (317)
T ss_pred             hhHHhhCCeEEEEeccCCCCCCcH--HHHHHHHHHhhhHhccCCeEEEECCCH--HHHHHHHHHHHhCCCEEEEcCCCCC
Confidence            344333335666 89999999999  9999998876531 1122477899999  9999999999999999999999875


Q ss_pred             ccccCCCCCCCCCCCc-cccccC---CCCcccccccCccccCcEEecChHHHH-HHHHHHHHhcC----cEeccchhhHH
Q psy14801        222 LAQPQSLNDVPENQIS-YNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSEG----LLVGGSSGTAM  292 (404)
Q Consensus       222 ~~~~~~~~~~~~~~~~-~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~g----i~~~~~tg~tl  292 (404)
                      ......+......... ......   ..... .......+.+++.+....+.+ ..+.||++|..    +|+..|||+++
T Consensus       103 ~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~-~~~~g~~~~~~~~n~~~~~g~~t~a~Ei~~q~~~~d~vvv~~G~Gg~~  181 (317)
T TIGR02991       103 QNKVDEIRRLGAEVRIVGRSQDDAQEEVERL-VADRGLTMLPPFDHPDIVAGQGTLGLEVVEQMPDLATVLVPLSGGGLA  181 (317)
T ss_pred             HHHHHHHHHcCCEEEEeCCCHHHHHHHHHHH-HHhcCCEeeCCCCChHHHhhHHHHHHHHHHhCCCCCEEEEEcChhHHH
Confidence            3211111111111100 000000   00000 000011222333232222332 24567776643    78888999999


Q ss_pred             HHHHHHHHhcCCCCeEEEEecCCCCCc--------------cc---c----ccc--hh--H-----HhhcCccCcHHHHH
Q psy14801        293 HVACQAAKSLRPDQRCVVILADGVRNY--------------LT---K----FIS--DE--W-----MIEKGFLDEAEELE  342 (404)
Q Consensus       293 ag~~~~lk~~~~~~~vv~v~~~~~~~~--------------~~---~----~~~--~~--~-----~~~~~~~~~~~~~~  342 (404)
                      +|+.+++|++.|+.+|+.|+|.+....              .+   .    .+.  ..  +     ..|..+.++|+++.
T Consensus       182 ~Gi~~~~k~~~p~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~~~~~~~~~~~~~~vd~~v~V~d~e~~  261 (317)
T TIGR02991       182 SGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIGLDNRVTFAMCKALLDEIVLVSEAEIA  261 (317)
T ss_pred             HHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhhccCCCCHHHHHHHHHhCCeEEEECHHHHH
Confidence            999999999999999999999643111              00   0    111  11  1     23344667887776


Q ss_pred             Hhc-------------cchhHHHHHHHHHHhcCCCCeEEEEEcCCCc
Q psy14801        343 EMI-------------HSGTAMHVACQAAKSLRPDQRCVVILADGVR  376 (404)
Q Consensus       343 ~g~-------------SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~  376 (404)
                      .++             |+++++++.+.  ..+.++++||+|+|-++.
T Consensus       262 ~a~~~l~~~~g~~ve~s~a~~~Aal~~--~~~~~~~~vvvvltG~n~  306 (317)
T TIGR02991       262 AGIRHAYAEEREIVEGAGAVGIAALLA--GKIKNPGPCAVIVSGRNI  306 (317)
T ss_pred             HHHHHHHHhCCcEEcchHHHHHHHHHc--CccccCCcEEEEeCCCCC
Confidence            643             44445544432  223457789999997763

Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.

>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme

Probab=99.46  E-value=1.9e-13  Score=134.50  Aligned_cols=231  Identities=11%  Similarity=0.030  Sum_probs=135.7

Q ss_pred             cEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc---C
Q psy14801        152 AVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP---Q  226 (404)
Q Consensus       152 ~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~---~  226 (404)
                      .+|+ .|+.||++|.|  +|.|..++.++.+ ..+.+|++.|+||  +|.++|+.++..|+++++++|..+.....   .
T Consensus        86 ~Iy~K~E~~nPtGS~K--~R~A~~~~~~a~~~G~~~~vtetssGN--~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~k~~  161 (419)
T TIGR01415        86 RIYYKYESVSPTGSHK--INTAIAQAYYAKIEGAKRLVTETGAGQ--WGSALSLAGALFGLECKVFMVRVSFNQKPYRKY  161 (419)
T ss_pred             eEEEEECCCCCCCCcH--HHHHHHHHHHHHHcCCCeEEEecCchH--HHHHHHHHHHHcCCcEEEEEeCCCcccCHHHHH
Confidence            4555 99999999988  9999988876653 2567888999999  99999999999999999999975421100   0


Q ss_pred             CCCCCCCCCC----ccccc--------cC------------------CC-CcccccccCccccCcEEecChHHHHHHHHH
Q psy14801        227 SLNDVPENQI----SYNEV--------EG------------------IG-YSFAATTLDRNVIDQWGKCGDKDTFLMARR  275 (404)
Q Consensus       227 ~~~~~~~~~~----~~~~~--------~~------------------i~-~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~  275 (404)
                      .+........    .....        ++                  .+ ..++..+..+ ++-.+..+...|+++++..
T Consensus       162 ~m~~~GA~Vi~~~~~~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~~y~~~~~~n-~~~~h~~~ig~Ei~~Ql~~  240 (419)
T TIGR01415       162 LMELYGAEVIPSPSEFTEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDTKYSLGSVLN-HVLLHQTVIGLEAKKQMEE  240 (419)
T ss_pred             HHHHcCCEEEEECCchhhHHHHhhhcccccccchHHHHHHHHHHHHhCCCCEEEeCCCCc-HHHHHHHHHHHHHHHHHHh
Confidence            0011110000    00000        00                  00 0011111100 0001112334455444432


Q ss_pred             HH-HhcCcEeccchhhHHHHHHHHHHh--c--CCCCeEEEEecCCCCCccc-------------------cccchhH---
Q psy14801        276 LI-KSEGLLVGGSSGTAMHVACQAAKS--L--RPDQRCVVILADGVRNYLT-------------------KFISDEW---  328 (404)
Q Consensus       276 l~-~~~gi~~~~~tg~tlag~~~~lk~--~--~~~~~vv~v~~~~~~~~~~-------------------~~~~~~~---  328 (404)
                      .. .-+.++++.|||++++|+...+.+  .  .++.+|++|++.+...+..                   ..++.++   
T Consensus       241 ~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~l~~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~  320 (419)
T TIGR01415       241 AGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPTLTRGEYRYDFGDTAGLTPLLKMYTLGHDFIPP  320 (419)
T ss_pred             cCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChhhhcCcccccccccccCCcceeeeecCCCCCCc
Confidence            11 124588899999999999854421  1  2478999999965321100                   0011111   


Q ss_pred             ------------------Hhhc----CccCcHHHHHHh-------------ccchhHHHHHHHHHHhcC-CCCeEEEEEc
Q psy14801        329 ------------------MIEK----GFLDEAEELEEM-------------IHSGTAMHVACQAAKSLR-PDQRCVVILA  372 (404)
Q Consensus       329 ------------------~~~~----~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~~~-~~~~iv~i~~  372 (404)
                                        +.+.    ...+++++++++             .|||++++++++.+++.. .++.+|++++
T Consensus       321 ~~~a~gl~~~~~~~~~~~l~~~~~~~~~~V~d~e~~~a~r~la~~eGi~~epssa~alaaai~~a~~~~~~~~~~vvv~~  400 (419)
T TIGR01415       321 PIHAGGLRYHGVAPTLSLLVNLGIVEARAYDQEEAFEAAVIFAKTEGIVPAPESAHAIAAAIDEARKCRETGEEKVILFN  400 (419)
T ss_pred             ceeccccccCCccHHHHHHhhcCceEEEEECHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhcCcCCCCeEEEEE
Confidence                              1111    124677777663             399999999999998754 2677888899


Q ss_pred             CCCcchhhc-cCCHHHH
Q psy14801        373 DGVRNYLTK-FISDEWM  388 (404)
Q Consensus       373 D~g~rYl~~-~~~~~w~  388 (404)
                      ++|..|++. .| ++|+
T Consensus       401 lsG~G~~d~~~y-~~~~  416 (419)
T TIGR01415       401 LSGHGLLDLKAY-AKYL  416 (419)
T ss_pred             cCCCCcCCHHHH-HHHh
Confidence            999999986 34 3444

This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.

>PRK12483 threonine dehydratase; Reviewed

Probab=99.46  E-value=4.2e-13  Score=135.00  Aligned_cols=224  Identities=13%  Similarity=0.116  Sum_probs=136.5

Q ss_pred             HHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC--CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC
Q psy14801        143 HRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG--KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG  219 (404)
Q Consensus       143 ~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~--~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~  219 (404)
                      ..+++..+..+|+ .|+.||.+|.|  +|.|+.++.++..  ... -||++++||  .|.++|+.++..|+++++|+|.+
T Consensus        44 ~~Ls~~~g~~IylK~E~lqptGSfK--~RGA~n~i~~l~~~~~~~-GVV~aSaGN--ha~gvA~aA~~lGi~~~IvmP~~  118 (521)
T PRK12483         44 PNLSARLGNQVLLKREDLQPVFSFK--IRGAYNKMARLPAEQLAR-GVITASAGN--HAQGVALAAARLGVKAVIVMPRT  118 (521)
T ss_pred             hhhhHhhCCEEEEEEcCCCCCCchH--HHHHHHHHHHhHHHHhcC-cEEEECCCH--HHHHHHHHHHHhCCCEEEEECCC
Confidence            3455544456777 89999999999  9999998876542  112 278889999  99999999999999999999998


Q ss_pred             CcccccCCCCCCCCCCC--ccccccC--CCCcccccccCccccCcEEecChHHHH----HHHHHHHHhc-----CcEecc
Q psy14801        220 SILAQPQSLNDVPENQI--SYNEVEG--IGYSFAATTLDRNVIDQWGKCGDKDTF----LMARRLIKSE-----GLLVGG  286 (404)
Q Consensus       220 ~~~~~~~~~~~~~~~~~--~~~~~~~--i~~~~~~~~~~~~~~~~~~~v~d~e~~----~~~~~l~~~~-----gi~~~~  286 (404)
                      ++..........++...  ....-+.  ..... .......+++++   +|+..+    ..+.||+++.     .+++..
T Consensus       119 tp~~Kv~~~r~~GAeVil~g~~~d~a~~~A~~l-a~e~g~~~v~pf---dd~~viaGqgTig~EI~eQ~~~~~D~Vvvpv  194 (521)
T PRK12483        119 TPQLKVDGVRAHGGEVVLHGESFPDALAHALKL-AEEEGLTFVPPF---DDPDVIAGQGTVAMEILRQHPGPLDAIFVPV  194 (521)
T ss_pred             CCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHH-HHhcCCeeeCCC---CChHHHHHHHHHHHHHHHHhCCCCCEEEEec
Confidence            86422111111111100  0000000  00000 000001112221   122221    2245555543     488999


Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcc-----------c---c---c-----cchh-H-----HhhcCccCcH
Q psy14801        287 SSGTAMHVACQAAKSLRPDQRCVVILADGVRNYL-----------T---K---F-----ISDE-W-----MIEKGFLDEA  338 (404)
Q Consensus       287 ~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~-----------~---~---~-----~~~~-~-----~~~~~~~~~~  338 (404)
                      ||||+++|+..++|+.+|+.+|+.|+|.+...+.           +   +   +     .++. |     ..|..+.+++
T Consensus       195 GgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~~~~~~~vd~vv~Vse  274 (521)
T PRK12483        195 GGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFELCRHYVDEVVTVST  274 (521)
T ss_pred             CccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHHHHHHHhCCEEEEECH
Confidence            9999999999999999999999999997643221           0   0   0     1111 1     1234456777


Q ss_pred             HHHHHhc-------------cchhHHHHHHHHHHhcC-CCCeEEEEEcCCC
Q psy14801        339 EELEEMI-------------HSGTAMHVACQAAKSLR-PDQRCVVILADGV  375 (404)
Q Consensus       339 ~~~~~g~-------------SsGa~~~~a~~~~~~~~-~~~~iv~i~~D~g  375 (404)
                      +++..++             |+|++++|++++.++.. ++++||+|++=++
T Consensus       275 ~ei~~ai~~l~~~~~i~vEpagAaalAal~~~~~~~~~~g~~VV~IlsGgN  325 (521)
T PRK12483        275 DELCAAIKDIYDDTRSITEPAGALAVAGIKKYAEREGIEGQTLVAIDSGAN  325 (521)
T ss_pred             HHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCC
Confidence            7665532             78888888888876532 5789999877554

>PRK09224 threonine dehydratase; Reviewed

Probab=99.46  E-value=1.9e-13  Score=138.03  Aligned_cols=231  Identities=13%  Similarity=0.123  Sum_probs=139.1

Q ss_pred             HHHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC
Q psy14801        142 AHRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG  219 (404)
Q Consensus       142 a~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~  219 (404)
                      +..+++..+..+|+ .|..||.+|.|  +|.|+.++.++... ...-||++|+||  .|.++|+.++..|+++++|+|..
T Consensus        26 ~~~Ls~~~g~~i~lK~E~lqptgSfK--~RgA~n~i~~l~~~~~~~gvV~aSaGN--ha~avA~aa~~lGi~~~IvmP~~  101 (504)
T PRK09224         26 APKLSARLGNQVLLKREDLQPVFSFK--LRGAYNKMAQLTEEQLARGVITASAGN--HAQGVALSAARLGIKAVIVMPVT  101 (504)
T ss_pred             hhHhHHHhCCEEEEEecCCCCCCCCh--HHHHHHHHHhhhHHhcCCEEEEECcCH--HHHHHHHHHHHcCCCEEEEECCC
Confidence            34455555556777 89999999999  99999999887521 122477889999  89999999999999999999998


Q ss_pred             CcccccCCCCCCCCCCCc-cccccC---CCCcccccccCccccCcEEecChHHHH-HHHHHHHHh-----cCcEeccchh
Q psy14801        220 SILAQPQSLNDVPENQIS-YNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKS-----EGLLVGGSSG  289 (404)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~-~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~-----~gi~~~~~tg  289 (404)
                      ++......+......... ......   ..... .......++.++.+....+.. ..+.||+++     +.+++..|||
T Consensus       102 tp~~K~~~~r~~GA~Vi~~g~~~~~a~~~a~~l-~~~~g~~~v~~f~~~~~i~G~gTi~~EI~~q~~~~~D~vvvpvGgG  180 (504)
T PRK09224        102 TPDIKVDAVRAFGGEVVLHGDSFDEAYAHAIEL-AEEEGLTFIHPFDDPDVIAGQGTIAMEILQQHPHPLDAVFVPVGGG  180 (504)
T ss_pred             CCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHH-HHhcCCEEeCCCCCcHHHHhHHHHHHHHHHhccCCCCEEEEecChh
Confidence            754321111111111000 000000   00000 000001111222111111111 223455554     3488889999


Q ss_pred             hHHHHHHHHHHhcCCCCeEEEEecCCCCCc-----------cc------cc-----cch-hH-----HhhcCccCcHHHH
Q psy14801        290 TAMHVACQAAKSLRPDQRCVVILADGVRNY-----------LT------KF-----ISD-EW-----MIEKGFLDEAEEL  341 (404)
Q Consensus       290 ~tlag~~~~lk~~~~~~~vv~v~~~~~~~~-----------~~------~~-----~~~-~~-----~~~~~~~~~~~~~  341 (404)
                      ++++|+..++|+..|+.+|+.|++.+...+           .+      .+     .+. .|     ..|..+.++|+++
T Consensus       181 GliaGia~~lk~~~p~~kVigVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g~~~~~~~~~~vd~~v~Vsd~ei  260 (504)
T PRK09224        181 GLIAGVAAYIKQLRPEIKVIGVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETFRLCQEYVDDVITVDTDEI  260 (504)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCccHHHHHHHHhcCCeEEEECHHHH
Confidence            999999999999999999999998654211           00      00     111 11     1234456777665


Q ss_pred             HHh-------------ccchhHHHHHHHHHHhcC-CCCeEEEEEcCCCcc
Q psy14801        342 EEM-------------IHSGTAMHVACQAAKSLR-PDQRCVVILADGVRN  377 (404)
Q Consensus       342 ~~g-------------~SsGa~~~~a~~~~~~~~-~~~~iv~i~~D~g~r  377 (404)
                      ..+             .|+|++++++++++++.. ++++||+|+|+++-.
T Consensus       261 ~~a~~~l~~~~~~~~epagA~~lAal~~~~~~~~~~g~~vv~i~sG~n~~  310 (504)
T PRK09224        261 CAAIKDVFEDTRSIAEPAGALALAGLKKYVAQHGIEGETLVAILSGANMN  310 (504)
T ss_pred             HHHHHHHHHhcCeEEcHHHHHHHHHHHHhhhhcCCCCCeEEEEECCCCCC
Confidence            543             388888888888876532 488999999998743

>PLN02550 threonine dehydratase

Probab=99.45  E-value=4.7e-13  Score=135.49  Aligned_cols=226  Identities=15%  Similarity=0.177  Sum_probs=140.8

Q ss_pred             HHHHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC---CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEc
Q psy14801        141 GAHRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG---KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGAD  216 (404)
Q Consensus       141 ~a~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~---~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~  216 (404)
                      ....+++..+..+|+ .|+.||.+|.|  +|.|+.++.++..   ..+  ||++++||  .|.++|+.++..|+++++|+
T Consensus       114 ~s~~LS~~~g~~IylK~E~lqptGSFK--~RGA~n~I~~L~~e~~~~G--VV~aSaGN--hAqgvA~aA~~lGika~Ivm  187 (591)
T PLN02550        114 LAKKLSERLGVKVLLKREDLQPVFSFK--LRGAYNMMAKLPKEQLDKG--VICSSAGN--HAQGVALSAQRLGCDAVIAM  187 (591)
T ss_pred             hhHHhhHhhCCEEEEEEcCCCCCCcHH--HHHHHHHHHHHHHhcCCCC--EEEECCCH--HHHHHHHHHHHcCCCEEEEE
Confidence            355666666567777 89999999999  9999999988742   233  67789999  88999999999999999999


Q ss_pred             CCCCcccccCCCCCCCCCCC--ccc--cccCCCCcccccccCccccCcEEecChHHHH----HHHHHHHHhc-----CcE
Q psy14801        217 PFGSILAQPQSLNDVPENQI--SYN--EVEGIGYSFAATTLDRNVIDQWGKCGDKDTF----LMARRLIKSE-----GLL  283 (404)
Q Consensus       217 p~~~~~~~~~~~~~~~~~~~--~~~--~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~----~~~~~l~~~~-----gi~  283 (404)
                      |...+......+...++...  ...  ........+ .......++.++   +|+..+    ..+.||+++.     .+|
T Consensus       188 P~~tp~~Kv~~~r~~GAeVvl~g~~~dea~~~A~~l-a~e~g~~fi~pf---ddp~viaGqgTig~EI~eQl~~~~D~Vv  263 (591)
T PLN02550        188 PVTTPEIKWQSVERLGATVVLVGDSYDEAQAYAKQR-ALEEGRTFIPPF---DHPDVIAGQGTVGMEIVRQHQGPLHAIF  263 (591)
T ss_pred             CCCCCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHH-HHhcCCEEECCC---CChHHHHHHHHHHHHHHHHcCCCCCEEE
Confidence            99886422111111111100  000  000000000 000001111211   233332    2245666653     388


Q ss_pred             eccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCc-----------cc--cccchh----------H-----HhhcCcc
Q psy14801        284 VGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNY-----------LT--KFISDE----------W-----MIEKGFL  335 (404)
Q Consensus       284 ~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~-----------~~--~~~~~~----------~-----~~~~~~~  335 (404)
                      +..|+||+++|+..++|+.+|+.+|+.|++.+...+           +.  ..+.|.          +     ..|..+.
T Consensus       264 vpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G~~t~~i~~~~vD~vV~  343 (591)
T PLN02550        264 VPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRLCRELVDGVVL  343 (591)
T ss_pred             EEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCccccCCCCCccceeecCCCCHHHHHHHHhhCCEEEE
Confidence            999999999999999999999999999999664221           00  011111          1     2244466


Q ss_pred             CcHHHHHHhc-------------cchhHHHHHHHHHHhcC-CCCeEEEEEcCCCc
Q psy14801        336 DEAEELEEMI-------------HSGTAMHVACQAAKSLR-PDQRCVVILADGVR  376 (404)
Q Consensus       336 ~~~~~~~~g~-------------SsGa~~~~a~~~~~~~~-~~~~iv~i~~D~g~  376 (404)
                      ++++++...+             ++|++++|+++++++.. ++++||+|+|=++-
T Consensus       344 Vsd~eI~~Ai~~l~e~~givvEpAGA~alAall~~~~~~~~~g~~Vv~vlsGgNi  398 (591)
T PLN02550        344 VSRDAICASIKDMFEEKRSILEPAGALALAGAEAYCKYYGLKDENVVAITSGANM  398 (591)
T ss_pred             ECHHHHHHHHHHHHHHCCCEEeHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCC
Confidence            7776665532             77888888888776422 67899999886543

>TIGR00260 thrC threonine synthase

Probab=99.45  E-value=4e-13  Score=129.45  Aligned_cols=220  Identities=15%  Similarity=0.090  Sum_probs=134.9

Q ss_pred             cEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC-CcccccCCCC
Q psy14801        152 AVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG-SILAQPQSLN  229 (404)
Q Consensus       152 ~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~-~~~~~~~~~~  229 (404)
                      .+|+ +|+.||++|.|  +|.+..++..+.++-...||+++|||  +|+++|+.++..|+++++++|++ .+......+.
T Consensus        40 ~i~~K~E~~nptGSfK--dR~a~~~l~~a~~~g~~~vv~aSsGN--~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~  115 (328)
T TIGR00260        40 NLYVLELFHNPTLSFK--DRGMAVALTKALELGNDTVLCASTGN--TGAAAAAYAGKAGVKVVILYPAGKISLGKLAQAL  115 (328)
T ss_pred             cEEehhhccCCchhhH--hhhHHHHHHHHHHcCCCEEEEeCCcH--HHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHH
Confidence            4666 99999999999  99999998877643334778899999  99999999999999999999997 4321110010


Q ss_pred             CCCCCCC---cc-----ccccCCC---CcccccccC--ccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHH
Q psy14801        230 DVPENQI---SY-----NEVEGIG---YSFAATTLD--RNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVAC  296 (404)
Q Consensus       230 ~~~~~~~---~~-----~~~~~i~---~~~~~~~~~--~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~  296 (404)
                      .......   ..     ..+..+.   ..+.....+  ...... +.....|++++... -.-+.+++..|||++++|+.
T Consensus       116 ~~GA~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~g-~~t~~~Ei~~q~~~-~~~d~iv~~vG~GG~~~G~~  193 (328)
T TIGR00260       116 GYNAEVVAIDGNFDDAQRLVKQLFGDKEALGLNSVNSIPYRLEG-QKTYAFEAVEQLGW-EAPDKVVVPVPNSGNFGAIL  193 (328)
T ss_pred             hcCcEEEEecCCHHHHHHHHHHHHhhcCeeecccCCCCCeEeee-ehhHHHHHHHHhCC-CCCCEEEEECCCcchHHHHH
Confidence            0000000   00     0000000   001001111  111111 23445556555432 01245889999999999999


Q ss_pred             HHHHhc-------CCCCeEEEEecCCCCCccc--------------cccch------------hH-----HhhcCccCcH
Q psy14801        297 QAAKSL-------RPDQRCVVILADGVRNYLT--------------KFISD------------EW-----MIEKGFLDEA  338 (404)
Q Consensus       297 ~~lk~~-------~~~~~vv~v~~~~~~~~~~--------------~~~~~------------~~-----~~~~~~~~~~  338 (404)
                      ..+++.       .|  ++++|++.+......              ..+.+            .+     ..+..+.++|
T Consensus       194 ~~~~~~~~~g~~~~p--~v~~Ve~~~~~~~~~~~~~~g~~~~~~~~~t~~~~l~~~~p~~~~~~~~~~~~~~~~~~~V~d  271 (328)
T TIGR00260       194 KGFKEKKEGGLDSLP--VKRGIQAEGAADIVRAFLESGQWEPIEDPATLSTAIDIGNPANWERALELFRRSNGNAEDVSD  271 (328)
T ss_pred             HHHHHHHhcCCccCC--ceeEEEcCCCChHHHHHHcCCCcCcCCCCCccCcceecCCCCCHHHHHHHHHhcCCcEEecCH
Confidence            999873       34  799999866421110              00000            00     1122345677


Q ss_pred             HHHHHh-------------ccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchh
Q psy14801        339 EELEEM-------------IHSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYL  379 (404)
Q Consensus       339 ~~~~~g-------------~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl  379 (404)
                      +++..+             .|||++++++++++++  +.++++||+++|-+|.++.
T Consensus       272 ~e~~~a~~~l~~~~gi~~~pssa~alaa~~~~~~~~~~~~~~~vv~i~tG~~~k~~  327 (328)
T TIGR00260       272 EEILEAIKLLAREEGYFVEPHSAVSVAALLKLVEKGTADPAERVVCALTGNGLKDP  327 (328)
T ss_pred             HHHHHHHHHHHHhcCeeECchHHHHHHHHHHHHhCCCCCCCCcEEEEecCCCCCCC
Confidence            766553             3899999999998874  4578899999999998763

Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.

>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia

Probab=99.44  E-value=8.7e-13  Score=125.81  Aligned_cols=218  Identities=10%  Similarity=-0.039  Sum_probs=129.4

Q ss_pred             CcEee-cCCCCCC---ChhhHHhhHHHHHHHHhCCCcCEEEEcc--CCChhHHHHHHHHHHhCCCcEEEEEcCCCCccc-
Q psy14801        151 NAVVL-DQFRNPN---NPLSHYETTAEEILRDTGGKVDMIVLGC--GTGGTASGIGRKIKEKCPSCKLVGADPFGSILA-  223 (404)
Q Consensus       151 ~~~~~-~e~~np~---~si~g~~~~a~ei~~q~~~~~~~vvv~~--gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~-  223 (404)
                      ..+|+ +|+.||.   ++.|  +|.+..|+.++..+-...|+++  ++||  +|+++|+.++..|+++++|+|...+.. 
T Consensus        17 ~~l~~K~E~~np~gsfgs~K--~R~~~~~l~~a~~~g~~~vv~~ggs~GN--~g~alA~~a~~~G~~~~i~v~~~~~~~~   92 (307)
T cd06449          17 VEIYAKRDDCNSGLAFGGNK--IRKLEYLLPDALAKGADTLVTVGGIQSN--HTRQVAAVAAKLGLKCVLVQENWVPYSD   92 (307)
T ss_pred             CcEEEecccccCCCCccchH--HHHHHHHHHHHHHcCCCEEEECCCchhH--HHHHHHHHHHHcCCeEEEEecCCCCccc
Confidence            35666 8999997   4568  9999999988764322345555  4889  999999999999999999999876521 


Q ss_pred             -------ccCCCCCCCCCCCc-cccc-cCCCC------cccccccC-cc-ccCcEE-ecChHHHH-HHHHHHHHh-----
Q psy14801        224 -------QPQSLNDVPENQIS-YNEV-EGIGY------SFAATTLD-RN-VIDQWG-KCGDKDTF-LMARRLIKS-----  279 (404)
Q Consensus       224 -------~~~~~~~~~~~~~~-~~~~-~~i~~------~~~~~~~~-~~-~~~~~~-~v~d~e~~-~~~~~l~~~-----  279 (404)
                             ....+......... .... .+...      ..+..... .. +.++.. +..+.+.+ ..+.||+++     
T Consensus        93 ~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~Ei~~q~~~~~  172 (307)
T cd06449          93 AVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLGGLGYVGFVLEIAQQEEELG  172 (307)
T ss_pred             ccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCcccHHHHHHHHHHHHHHHHhcC
Confidence                   00001111111000 0000 00000      00000000 00 011111 22222221 233444443     


Q ss_pred             ---cCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCccc-------------cc---------cchhHHhhcCc
Q psy14801        280 ---EGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT-------------KF---------ISDEWMIEKGF  334 (404)
Q Consensus       280 ---~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~-------------~~---------~~~~~~~~~~~  334 (404)
                         +.+++..|||++++|+.+.+++..++.+|+.|++.+...+..             .+         +.++ ..+..+
T Consensus       173 ~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~  251 (307)
T cd06449         173 FKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGLEVKEEDVVLDDD-YAAPEY  251 (307)
T ss_pred             CCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCCCCCcccEEEecC-cccCCC
Confidence               448999999999999999999999999999999976432210             00         0111 123345


Q ss_pred             cCcHHHHHHh-------------c-cchhHHHHHHHHHHh--cCCCCeEEEEEcC
Q psy14801        335 LDEAEELEEM-------------I-HSGTAMHVACQAAKS--LRPDQRCVVILAD  373 (404)
Q Consensus       335 ~~~~~~~~~g-------------~-SsGa~~~~a~~~~~~--~~~~~~iv~i~~D  373 (404)
                      .++|+++..+             . |||++++++.+++++  ++++++||+|...
T Consensus       252 ~v~d~e~~~a~~~la~~~Gi~~ep~ytg~~~aa~~~~~~~~~~~~~~~vv~i~TG  306 (307)
T cd06449         252 GIPNDETIEAIKLCARLEGIITDPVYEGKSMQGMIDLVRNGEFKEGSKVLFIHLG  306 (307)
T ss_pred             CCCCHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHhcCCCCCCCeEEEEeCC
Confidence            5666665552             2 799999999999886  4678899998754

>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family

Probab=99.44  E-value=1.5e-12  Score=124.54  Aligned_cols=226  Identities=12%  Similarity=0.004  Sum_probs=130.8

Q ss_pred             HHHHhCCCcEee-cCCCCCC--ChhhHHhhHHHHHHHHhCCC-cCEEEEcc--CCChhHHHHHHHHHHhCCCcEEEEEcC
Q psy14801        144 RIASQMKNAVVL-DQFRNPN--NPLSHYETTAEEILRDTGGK-VDMIVLGC--GTGGTASGIGRKIKEKCPSCKLVGADP  217 (404)
Q Consensus       144 ~l~~~~~~~~~~-~e~~np~--~si~g~~~~a~ei~~q~~~~-~~~vvv~~--gsG~~~~Gi~la~~~~~~~~~vi~V~p  217 (404)
                      ++.+..+..+|+ .|+.||.  ++.|  +|.+..|++.+.++ .+ .||++  ++||  +|+++|+.++..|+++++|+|
T Consensus        15 ~l~~~~g~~l~~K~E~l~p~~~gs~K--~R~~~~~l~~a~~~g~~-~vv~~g~ssGN--~g~alA~~a~~~G~~~~ivvp   89 (311)
T TIGR01275        15 RISREIGAEIYIKRDDLTGLGIGGNK--IRKLEYLLADALSKGAD-TVITVGAIQSN--HARATALAAKKLGLDAVLVLR   89 (311)
T ss_pred             hhhhhcCCeEEEEeccCcCCCCCchh--HHHHHHHHHHHHHcCCC-EEEEcCCchhH--HHHHHHHHHHHhCCceEEEec
Confidence            344433345666 8999996  7888  99999999887643 34 45565  4599  999999999999999999999


Q ss_pred             CCCc-ccccCCCCCCCCCCC--c--ccc-ccCCCCccc---cccc-Cc-cccCcEEecChHHHH-HHHHHHHHh------
Q psy14801        218 FGSI-LAQPQSLNDVPENQI--S--YNE-VEGIGYSFA---ATTL-DR-NVIDQWGKCGDKDTF-LMARRLIKS------  279 (404)
Q Consensus       218 ~~~~-~~~~~~~~~~~~~~~--~--~~~-~~~i~~~~~---~~~~-~~-~~~~~~~~v~d~e~~-~~~~~l~~~------  279 (404)
                      .... ......+........  .  .+. .........   .... +. .++.++.+..+.+.+ .++.||+++      
T Consensus        90 ~~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~EI~~q~~~~~~  169 (311)
T TIGR01275        90 EKEELNGNLLLDKLMGAETRVYSAEEYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLGTLGYVEAVLEIATQLESEVK  169 (311)
T ss_pred             CCccCCCCHHHHHHcCCEEEEECchhhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence            8642 110000011111100  0  000 000000000   0000 00 112233333333332 234555554      


Q ss_pred             -cCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC----Ccc----c---cccch----hH-----HhhcCccCcH
Q psy14801        280 -EGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR----NYL----T---KFISD----EW-----MIEKGFLDEA  338 (404)
Q Consensus       280 -~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~----~~~----~---~~~~~----~~-----~~~~~~~~~~  338 (404)
                       +.+|++.|||++++|+.+.+|+++|+.+|+.|++....    .+.    +   ..+..    .|     ..+..+.++|
T Consensus       170 ~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~d  249 (311)
T TIGR01275       170 FDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFGEDMTDKFVNLVKEIAEGLEVKASEVIPELDDYSGPGYGKPT  249 (311)
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHHHHHHHHHHhCCCCCCCEEEECCcccCcCCCCC
Confidence             35899999999999999999999999999989864321    000    0   01110    01     1122355666


Q ss_pred             HHHHHh-------------c-cchhHHHHHHHHHHhcC-CCCeEEEEEcCC
Q psy14801        339 EELEEM-------------I-HSGTAMHVACQAAKSLR-PDQRCVVILADG  374 (404)
Q Consensus       339 ~~~~~g-------------~-SsGa~~~~a~~~~~~~~-~~~~iv~i~~D~  374 (404)
                      +++..+             . |||++++++++++++.+ ++++||+|+|-+
T Consensus       250 ~e~~~~~~~la~~~gi~vep~~sg~~~aa~~~~~~~~~~~~~~vv~i~tGG  300 (311)
T TIGR01275       250 SEVAEIVKKVASREGIILDPVYTGKAFYGLIDLIRKGELGEKGILFIHTGG  300 (311)
T ss_pred             HHHHHHHHHHHHHhCCccCcchHHHHHHHHHHHHHhCCCCCCCEEEEECCC
Confidence            665553             2 68999999999876543 467899999865

This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).

>PRK06450 threonine synthase; Validated

Probab=99.42  E-value=5.1e-13  Score=128.34  Aligned_cols=214  Identities=13%  Similarity=0.074  Sum_probs=131.3

Q ss_pred             Eee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCC
Q psy14801        153 VVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDV  231 (404)
Q Consensus       153 ~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~  231 (404)
                      +|+ +|+.||++|.|  ||.+.-++.++.+.-...|++++|||  +|+++|..++..|+++++++|.+.+......+...
T Consensus        67 l~~K~E~~nPTGSfK--DRga~~~i~~a~~~g~~~vv~aSsGN--~g~slA~~aa~~G~~~~i~vP~~~~~~k~~~i~~~  142 (338)
T PRK06450         67 IWFKLDFLNPTGSYK--DRGSVTLISYLAEKGIKQISEDSSGN--AGASIAAYGAAAGIEVKIFVPETASGGKLKQIESY  142 (338)
T ss_pred             EEEEecCCCCcCCCH--HHHHHHHHHHHHHcCCCEEEEECCcH--HHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHc
Confidence            555 99999999999  99999998887643334789999999  99999999999999999999998754322111111


Q ss_pred             CCCCCc-cccccCCCCcccccccCccccCcEEecChHHHHH-HHHHHHHhc------CcEeccchhhHHHHHHHHHHhcC
Q psy14801        232 PENQIS-YNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFL-MARRLIKSE------GLLVGGSSGTAMHVACQAAKSLR  303 (404)
Q Consensus       232 ~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~~-~~~~l~~~~------gi~~~~~tg~tlag~~~~lk~~~  303 (404)
                      ...... ....+... . ........+..++.+....|-+. .+.||++|.      .+++..|+|++++|+.+.++++.
T Consensus       143 GA~vi~v~~~~~~~~-~-~a~~~g~~~~~~~~np~~ieG~kTia~EI~eql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~  220 (338)
T PRK06450        143 GAEVVRVRGSREDVA-K-AAENSGYYYASHVLQPQFRDGIRTLAYEIAKDLDWKIPNYVFIPVSAGTLLLGVYSGFKHLL  220 (338)
T ss_pred             CCEEEEECCCHHHHH-H-HHHhcCeEeccCCCCccHHHHHHHHHHHHHHHcCCCCCCEEEEECCchHHHHHHHHHHHHHH
Confidence            111100 00000000 0 00000111222333333334433 345676654      37888899999999999999864


Q ss_pred             C------CCeEEEEecCCCCCcc-------------ccccc-----------h---hHHh--hcCccCcHHHHHHh----
Q psy14801        304 P------DQRCVVILADGVRNYL-------------TKFIS-----------D---EWMI--EKGFLDEAEELEEM----  344 (404)
Q Consensus       304 ~------~~~vv~v~~~~~~~~~-------------~~~~~-----------~---~~~~--~~~~~~~~~~~~~g----  344 (404)
                      +      ..++++|++.+.....             ...+.           +   ..+.  +..+.++|+++.++    
T Consensus       221 ~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~~p~~~~~~~~~i~~~g~~v~V~d~ei~~a~~~L  300 (338)
T PRK06450        221 DSGVISEMPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVSTRPFLLDYMVKALSEYGECIVVSDNEIVEAWKEL  300 (338)
T ss_pred             hcCCccCCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeeeecCCCCCHHHHHHHHHhcCcEEEECHHHHHHHHHHH
Confidence            3      2589999996631110             00010           1   0111  13355777766553    


Q ss_pred             --------ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcc
Q psy14801        345 --------IHSGTAMHVACQAAKSLRPDQRCVVILADGVRN  377 (404)
Q Consensus       345 --------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~r  377 (404)
                              .|||++++++.++     ++.+||++++-+|.|
T Consensus       301 a~~Gi~vepssaaalAa~~~l-----~~~~vv~vltG~glK  336 (338)
T PRK06450        301 AKKGLLVEYSSATVYAAYKKY-----SVNDSVLVLTGSGLK  336 (338)
T ss_pred             HHcCCEEChhHHHHHHHHHHC-----CCCCEEEEeCCCCcc
Confidence                    2777888777765     347899999998865

>PRK03910 D-cysteine desulfhydrase; Validated

Probab=99.39  E-value=3.1e-12  Score=123.20  Aligned_cols=226  Identities=10%  Similarity=0.026  Sum_probs=130.1

Q ss_pred             HHHHhCCCcEee-cCCCCCC--ChhhHHhhHHHHHHHHhCCC-cCEEEEccC--CChhHHHHHHHHHHhCCCcEEEEEcC
Q psy14801        144 RIASQMKNAVVL-DQFRNPN--NPLSHYETTAEEILRDTGGK-VDMIVLGCG--TGGTASGIGRKIKEKCPSCKLVGADP  217 (404)
Q Consensus       144 ~l~~~~~~~~~~-~e~~np~--~si~g~~~~a~ei~~q~~~~-~~~vvv~~g--sG~~~~Gi~la~~~~~~~~~vi~V~p  217 (404)
                      .+.+..+..+|+ .|+.||.  ++.|  +|.+..++.++.+. .+. ||.+|  +||  +|+++|+.++..|+++++|+|
T Consensus        23 ~l~~~~g~~i~~K~E~lnp~g~gs~K--~R~~~~~l~~a~~~g~~~-vvt~g~s~gN--~g~alA~~a~~~G~~~~i~vp   97 (331)
T PRK03910         23 RLSAALGPDIYIKRDDLTGLALGGNK--TRKLEFLLADALAQGADT-LITAGAIQSN--HARQTAAAAAKLGLKCVLLLE   97 (331)
T ss_pred             hhhHhhCCcEEEEeccCCCCCCCchH--HHHHHHHHHHHHHcCCCE-EEEcCcchhH--HHHHHHHHHHHhCCcEEEEEc
Confidence            344433345666 8999996  4788  99999999887633 344 44554  489  999999999999999999999


Q ss_pred             CCCccccc--------CCCCCCCCCCCccccccCCCC---cc---cccccC--ccccCcEEecChHHHH-HHHHHHHHh-
Q psy14801        218 FGSILAQP--------QSLNDVPENQISYNEVEGIGY---SF---AATTLD--RNVIDQWGKCGDKDTF-LMARRLIKS-  279 (404)
Q Consensus       218 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~~---~~---~~~~~~--~~~~~~~~~v~d~e~~-~~~~~l~~~-  279 (404)
                      ...+....        ..+.............++...   ..   +..+..  ..+..++.+.-+.+.+ ..+.||+++ 
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~q~  177 (331)
T PRK03910         98 NPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNALGALGYVACALEIAQQL  177 (331)
T ss_pred             CCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCchhHHHHHHHHHHHHHHH
Confidence            87653211        001111111000000000000   00   000000  0011222222222332 233444433 


Q ss_pred             -------cCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcccc-------c----c------c-hh--H---H
Q psy14801        280 -------EGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK-------F----I------S-DE--W---M  329 (404)
Q Consensus       280 -------~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~-------~----~------~-~~--~---~  329 (404)
                             +.+|+..|||++++|+.+.+++.+++.+|+.|++.++..+...       .    +      . ..  +   .
T Consensus       178 ~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~  257 (331)
T PRK03910        178 AEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQEPKVAKLAQATAELLGLPTEIPRADIRLWDDY  257 (331)
T ss_pred             HhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHcCCCccCCcccEEEEcCC
Confidence                   3588999999999999999999999999999999764322110       0    0      0 00  1   1


Q ss_pred             hhcCccCcHHHHHHh-------------c-cchhHHHHHHHHHHh--cCCCCeEEEEEcCCC
Q psy14801        330 IEKGFLDEAEELEEM-------------I-HSGTAMHVACQAAKS--LRPDQRCVVILADGV  375 (404)
Q Consensus       330 ~~~~~~~~~~~~~~g-------------~-SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g  375 (404)
                      .+..+.++|++++.+             . |||++++++++++++  +.++++||+| .++|
T Consensus       258 ~~~~~~v~d~e~~~~~~~l~~~~gi~~ep~ysg~~~aa~~~~~~~~~~~~~~~Vv~i-~tGG  318 (331)
T PRK03910        258 VGPGYGVPTDEMLEAVKLLARTEGILLDPVYTGKAMAGLIDLIRQGRFKKGGNVLFI-HTGG  318 (331)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHcCCCCCCCeEEEE-ECCC
Confidence            222355666666553             2 589999999998765  3456788877 5666

>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional

Probab=99.36  E-value=4.9e-12  Score=122.16  Aligned_cols=226  Identities=11%  Similarity=0.012  Sum_probs=129.4

Q ss_pred             HHHHHhCC--CcEee-cCCCCCC---ChhhHHhhHHHHHHHHhCCC-cCEEEEcc--CCChhHHHHHHHHHHhCCCcEEE
Q psy14801        143 HRIASQMK--NAVVL-DQFRNPN---NPLSHYETTAEEILRDTGGK-VDMIVLGC--GTGGTASGIGRKIKEKCPSCKLV  213 (404)
Q Consensus       143 ~~l~~~~~--~~~~~-~e~~np~---~si~g~~~~a~ei~~q~~~~-~~~vvv~~--gsG~~~~Gi~la~~~~~~~~~vi  213 (404)
                      .++.+..+  ..+|+ +|+.||.   ++.|  +|.+..+++++.++ .+ .|+++  ++||  +|+++|+.++..|++++
T Consensus        22 ~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K--~R~~~~~l~~a~~~G~~-~vvs~G~s~GN--~g~alA~aa~~~G~~~~   96 (337)
T PRK12390         22 KRLSAHLGGKVELYAKREDCNSGLAFGGNK--TRKLEYLVPDALAQGAD-TLVSIGGVQSN--HTRQVAAVAAHLGMKCV   96 (337)
T ss_pred             HHHHHHhCCCCeEEEEeCCCCCCCCccchh--HHHHHHHHHHHHHcCCC-EEEEeCCCccH--HHHHHHHHHHHcCCeEE
Confidence            34444433  34666 8999987   5668  99999999988643 44 44555  6799  99999999999999999


Q ss_pred             EEcCCCCccc-----ccC---CCCCCCCCCCcccc-cc-CCCCc--ccccccCccccCcEEecChHH--------HHHHH
Q psy14801        214 GADPFGSILA-----QPQ---SLNDVPENQISYNE-VE-GIGYS--FAATTLDRNVIDQWGKCGDKD--------TFLMA  273 (404)
Q Consensus       214 ~V~p~~~~~~-----~~~---~~~~~~~~~~~~~~-~~-~i~~~--~~~~~~~~~~~~~~~~v~d~e--------~~~~~  273 (404)
                      +|++...+..     ...   .+............ .. +....  ............+|....+.+        ...++
T Consensus        97 iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a  176 (337)
T PRK12390         97 LVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAIPAGASDHPLGGLGFVGFA  176 (337)
T ss_pred             EEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEeCCcCCCCCcccHHHHHHH
Confidence            9966543210     000   00111111000000 00 00000  000000000011221211111        12334


Q ss_pred             HHHHHh--------cCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcccc-----------c--cc-----hh
Q psy14801        274 RRLIKS--------EGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK-----------F--IS-----DE  327 (404)
Q Consensus       274 ~~l~~~--------~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~-----------~--~~-----~~  327 (404)
                      .||+++        +.+++..|||++++|+.+.+++..|+.+|++|++.+...+...           .  +.     ..
T Consensus       177 ~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~  256 (337)
T PRK12390        177 EEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTRAQVLRIARNTAELVELGRDITEDD  256 (337)
T ss_pred             HHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHHHHHHHhCCCCCCChhh
Confidence            555553        4599999999999999999999999999999999664322110           0  00     11


Q ss_pred             H-----HhhcCccCcHHHHHHhc--------------cchhHHHHHHHHHHh--cCCCCeEEEEEcC
Q psy14801        328 W-----MIEKGFLDEAEELEEMI--------------HSGTAMHVACQAAKS--LRPDQRCVVILAD  373 (404)
Q Consensus       328 ~-----~~~~~~~~~~~~~~~g~--------------SsGa~~~~a~~~~~~--~~~~~~iv~i~~D  373 (404)
                      |     ..+..+.++|+++.+++              +||++++++++++++  ++++.+||++=..
T Consensus       257 ~~~~~~~~~~~~~vsd~e~~~a~~~la~~~gi~~ep~ysg~~~aa~~~~~~~g~~~~~~~vv~~htg  323 (337)
T PRK12390        257 VVLDERYAGPEYGLPNEGTLEAIRLCARLEGMLTDPVYEGKSMHGMIDLVRKGEFPEGSKVLYAHLG  323 (337)
T ss_pred             EEEecccccCCCCCCCHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCCCCCCeEEEEeCC
Confidence            1     12344556766665532              499999999999975  5677787766443

>PRK08813 threonine dehydratase; Provisional

Probab=99.36  E-value=2.3e-12  Score=123.59  Aligned_cols=212  Identities=13%  Similarity=0.084  Sum_probs=129.5

Q ss_pred             Eee-cCCCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCC
Q psy14801        153 VVL-DQFRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLND  230 (404)
Q Consensus       153 ~~~-~e~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~  230 (404)
                      +|+ +|+.||++|.|  +|.|+.++.++.+. ...-||++++||  +|+++|+.++..|+++++|+|.+.+......+..
T Consensus        50 v~lK~E~~nptGSfK--~RgA~~~l~~a~~~~~~~~VV~aSsGN--~G~alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~  125 (349)
T PRK08813         50 VWLKLENLQRTGSYK--VRGALNALLAGLERGDERPVICASAGN--HAQGVAWSAYRLGVQAITVMPHGAPQTKIAGVAH  125 (349)
T ss_pred             EEEEecCCCCcCCCH--HHHHHHHHHHHHHcCCCCeEEEECCCH--HHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHH
Confidence            555 89999999999  99999999887643 222488999999  9999999999999999999999875432211111


Q ss_pred             CCCCCCc--cc--cccCCCCcccccccCccccCcEEecChHHHH-HHHHHHHHh--cCcEeccchhhHHHHHHHHHHhcC
Q psy14801        231 VPENQIS--YN--EVEGIGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKS--EGLLVGGSSGTAMHVACQAAKSLR  303 (404)
Q Consensus       231 ~~~~~~~--~~--~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~--~gi~~~~~tg~tlag~~~~lk~~~  303 (404)
                      .......  ..  ........+ .......+++++.+....+-+ ..+.||+++  +.+++..|+|+.++|+.+++|+  
T Consensus       126 ~GAeVv~~g~~~~~a~~~a~~l-a~~~g~~~v~~~~np~~i~G~~Tig~EI~e~~pD~VvvpvGgGGliaGia~~lk~--  202 (349)
T PRK08813        126 WGATVRQHGNSYDEAYAFAREL-ADQNGYRFLSAFDDPDVIAGQGTVGIELAAHAPDVVIVPIGGGGLASGVALALKS--  202 (349)
T ss_pred             cCCEEEEECCCHHHHHHHHHHH-HHhcCCEEcCccCChHHHHHHHHHHHHHHcCCCCEEEEEeCccHHHHHHHHHHhc--
Confidence            1111100  00  000000000 000111223333222222222 235666664  3488888999999999999996  


Q ss_pred             CCCeEEEEecCCCCCc----------------cccccc------hhH-----HhhcCccCcHHHHHHhc-----------
Q psy14801        304 PDQRCVVILADGVRNY----------------LTKFIS------DEW-----MIEKGFLDEAEELEEMI-----------  345 (404)
Q Consensus       304 ~~~~vv~v~~~~~~~~----------------~~~~~~------~~~-----~~~~~~~~~~~~~~~g~-----------  345 (404)
                      ++.+|+.|++.+...+                +-.++.      ..+     ..|..+.++|+++..++           
T Consensus       203 ~~~rVigVqpega~~~~~s~~g~~~~~~~~~tiadgl~~~~p~~~~~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~v  282 (349)
T PRK08813        203 QGVRVVGAQVEGVDSMARAIRGDLREIAPVATLADGVKVKIPGFLTRRLCSSLLDDVVIVREAELRETLVRLALEEHVIA  282 (349)
T ss_pred             CCCEEEEEEECCCchHHHHHcCCCcccCCCCceecccccCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEE
Confidence            4789999999764211                000110      000     22344567887776643           


Q ss_pred             --cchhHHHHHHHHHHhcCCCCeEEEEEcCCCc
Q psy14801        346 --HSGTAMHVACQAAKSLRPDQRCVVILADGVR  376 (404)
Q Consensus       346 --SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~  376 (404)
                        |+|+++++++++     .+++||+|+|-+.-
T Consensus       283 E~aga~alAa~~~~-----~~~~v~~vlsGgN~  310 (349)
T PRK08813        283 EGAGALALAAGRRV-----SGKRKCAVVSGGNI  310 (349)
T ss_pred             EEcHHHHHHHHHHh-----CCCCEEEEECCCCC
Confidence              777777776542     46789999987653

>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional

Probab=99.36  E-value=7.1e-12  Score=120.54  Aligned_cols=226  Identities=12%  Similarity=0.010  Sum_probs=131.0

Q ss_pred             HHHHHhCCCcEee-cCCCCCC--ChhhHHhhHHHHHHHHhCCC-cCEEE-EccCCChhHHHHHHHHHHhCCCcEEEEEcC
Q psy14801        143 HRIASQMKNAVVL-DQFRNPN--NPLSHYETTAEEILRDTGGK-VDMIV-LGCGTGGTASGIGRKIKEKCPSCKLVGADP  217 (404)
Q Consensus       143 ~~l~~~~~~~~~~-~e~~np~--~si~g~~~~a~ei~~q~~~~-~~~vv-v~~gsG~~~~Gi~la~~~~~~~~~vi~V~p  217 (404)
                      ..+.+..+..+|+ .|+.||.  ++.|  +|.+..+++++.++ .+.+| +++++||  +|+++|+.++..|+++++|+|
T Consensus        28 ~~l~~~~g~~v~~K~E~l~~~~~gg~K--~R~~~~~l~~a~~~G~~~vv~~~~ssGN--~g~alA~~a~~~G~~~~ivvp  103 (329)
T PRK14045         28 PNISRELGADVYVKRDDLTGLGIGGNK--IRKLEYLLGDALSRGADVVITVGAVHSN--HAFVTGLAAKKLGLDAVLVLR  103 (329)
T ss_pred             hhhHHHhCCeEEEEcccccCCCCCcch--HHHHHhHHHHHHHcCCCEEEEeCccHHH--HHHHHHHHHHHcCCeEEEEEe
Confidence            3444433345666 8899875  5678  99999999887633 34444 4899999  999999999999999999999


Q ss_pred             CCCccccc-CCCCCCCCCCCc-----ccc----ccCCCCcccccccCcc-ccCcEEecChHHHH-HHHHHHHHh------
Q psy14801        218 FGSILAQP-QSLNDVPENQIS-----YNE----VEGIGYSFAATTLDRN-VIDQWGKCGDKDTF-LMARRLIKS------  279 (404)
Q Consensus       218 ~~~~~~~~-~~~~~~~~~~~~-----~~~----~~~i~~~~~~~~~~~~-~~~~~~~v~d~e~~-~~~~~l~~~------  279 (404)
                      ...+.... ............     ...    .......+........ +..++.+..+.+.+ ..+.||+++      
T Consensus       104 ~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~~~g~~~~~~EI~~q~~~~~~  183 (329)
T PRK14045        104 GKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVGTLGYVRAVGEIATQVKKLGV  183 (329)
T ss_pred             CCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHHHHHHHHhcCC
Confidence            76431100 000011100000     000    0000000000000001 11222222233332 333355544      


Q ss_pred             --cCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcccc-------------c---------cchhHHhhcCcc
Q psy14801        280 --EGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK-------------F---------ISDEWMIEKGFL  335 (404)
Q Consensus       280 --~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~-------------~---------~~~~~~~~~~~~  335 (404)
                        +.++++.|||++++|+.+.+++.+|+.+|+.|++.+...++..             .         +.|..+ +....
T Consensus       184 ~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~-~~y~~  262 (329)
T PRK14045        184 RFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGSFGEKMKEKVKNLVKKTKELLGVKVKVQEPELYDYSF-GEYGK  262 (329)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCCccceEeccccc-CCCCC
Confidence              3389999999999999999999999999999999652221111             0         111111 22223


Q ss_pred             CcHHHHHH-------------h-ccchhHHHHHHHHHHhcCCCCeEEEEEcCC
Q psy14801        336 DEAEELEE-------------M-IHSGTAMHVACQAAKSLRPDQRCVVILADG  374 (404)
Q Consensus       336 ~~~~~~~~-------------g-~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~  374 (404)
                      +++ ++++             + .|||.+++++++++++.+.+++||+|..-+
T Consensus       263 ~~~-e~~~~~~~la~~eGi~ldpvytgk~~~a~~~~~~~~~~~~~iv~ihtGG  314 (329)
T PRK14045        263 ITK-EVAKLIRSVGTMEGLILDPVYTGKAFYGLMDLAKKGELGEKILFIHTGG  314 (329)
T ss_pred             CCH-HHHHHHHHHHHhhCCCCccchHHHHHHHHHHHHHcCCCCCCEEEEECCC
Confidence            443 3333             3 399999999999999865578898887654

>PRK02991 D-serine dehydratase; Provisional

Probab=99.34  E-value=3.2e-12  Score=126.42  Aligned_cols=224  Identities=12%  Similarity=0.051  Sum_probs=134.5

Q ss_pred             CcEee-cCCCCC-CChhhHHhhHHHHHHHHhC-----C----CcC-----------------EEEEccCCChhHHHHHHH
Q psy14801        151 NAVVL-DQFRNP-NNPLSHYETTAEEILRDTG-----G----KVD-----------------MIVLGCGTGGTASGIGRK  202 (404)
Q Consensus       151 ~~~~~-~e~~np-~~si~g~~~~a~ei~~q~~-----~----~~~-----------------~vvv~~gsG~~~~Gi~la  202 (404)
                      ..+|+ +|+.|| +||.|  +|.|+.++.++.     +    .|+                 ..||+++|||  +|+++|
T Consensus        98 ~~V~lK~E~~np~tGSFK--~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~~~~~~~~VV~aSsGN--~G~alA  173 (441)
T PRK02991         98 GRLLLKKDSHLPISGSIK--ARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFRQFFSQYSIAVGSTGN--LGLSIG  173 (441)
T ss_pred             ceEEEEEcCCCCCcCChH--HHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhhhhccCcEEEEECCcH--HHHHHH
Confidence            35666 999999 89999  999988876531     1    122                 2689999999  999999


Q ss_pred             HHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCc--ccc--ccCCCCcccccccCccccCcEEecChHHH---H-HHHH
Q psy14801        203 IKEKCPSCKLVGADPFGSILAQPQSLNDVPENQIS--YNE--VEGIGYSFAATTLDRNVIDQWGKCGDKDT---F-LMAR  274 (404)
Q Consensus       203 ~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~--~~~--~~~i~~~~~~~~~~~~~~~~~~~v~d~e~---~-~~~~  274 (404)
                      +.++..|+++++|+|++.+......+...+.....  ...  ............-...+++++   +++..   + ..+.
T Consensus       174 ~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~~~~~a~~~A~~la~~~~~~~~~~~~---~~~~~iaG~~Tig~  250 (441)
T PRK02991        174 IMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEGDYGVAVEEGRKAAESDPNCYFIDDE---NSRTLFLGYAVAGL  250 (441)
T ss_pred             HHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCCeEeCCCC---CchhHHHhHHHHHH
Confidence            99999999999999998864332222221111100  000  000000000000000111221   11122   1 2345


Q ss_pred             HHHHhcC-------------cEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCCCCcc------------ccc-----
Q psy14801        275 RLIKSEG-------------LLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGVRNYL------------TKF-----  323 (404)
Q Consensus       275 ~l~~~~g-------------i~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~~~~~------------~~~-----  323 (404)
                      ||+++.+             +++..|+|++++|+.+.+|+. .++.+|+.|+|.+...+.            ...     
T Consensus       251 EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~~~~s~~~G~~~~~~~~~~g~~~  330 (441)
T PRK02991        251 RLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGLMTGLHDQISVQDIGIDN  330 (441)
T ss_pred             HHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChHHHHHHhcCCCcceeccccCCCC
Confidence            5555432             567778999999999999996 688999999996642110            000     


Q ss_pred             --c---------ch-hH-----HhhcCccCcHHHHHHh-------------ccchhHHHHHHHHHHh--------cC---
Q psy14801        324 --I---------SD-EW-----MIEKGFLDEAEELEEM-------------IHSGTAMHVACQAAKS--------LR---  362 (404)
Q Consensus       324 --~---------~~-~~-----~~~~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~--------~~---  362 (404)
                        +         .. .|     ..+..+.++|+++.++             .|+|++++++.+++++        +.   
T Consensus       331 ~Tiadgl~~~~~~~~~~~~~~~~vd~~v~VsD~ei~~a~~~L~~~~gi~vEpS~AaalAa~~~l~~~~~~~~~~~l~~~~  410 (441)
T PRK02991        331 LTAADGLAVGRASGFVGRAMERLLDGVYTVSDETLYRLLGLLADTEGIRLEPSALAGMAGPVRVCASVAYLQRHGLSEQL  410 (441)
T ss_pred             cchhhhhcCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceeeHHHHHHHHHHHHHHhCHHHHHHcCCcccc
Confidence              0         00 01     1233456788777663             3889999998876552        22   


Q ss_pred             CCCeEEEEEcCCCcchhhc
Q psy14801        363 PDQRCVVILADGVRNYLTK  381 (404)
Q Consensus       363 ~~~~iv~i~~D~g~rYl~~  381 (404)
                      ++++||++.|=+...+...
T Consensus       411 ~~~~vv~~~~gg~~~~~~~  429 (441)
T PRK02991        411 KNATHLVWATGGSMVPEEE  429 (441)
T ss_pred             CCCEEEEEECCCCCCCHHH
Confidence            5789999999876665553

>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase

Probab=99.33  E-value=3.6e-12  Score=125.53  Aligned_cols=199  Identities=12%  Similarity=0.014  Sum_probs=121.3

Q ss_pred             CcEee-cCCCCC-CChhhHHhhHHHHHHHHh-----CC----CcC-----------------EEEEccCCChhHHHHHHH
Q psy14801        151 NAVVL-DQFRNP-NNPLSHYETTAEEILRDT-----GG----KVD-----------------MIVLGCGTGGTASGIGRK  202 (404)
Q Consensus       151 ~~~~~-~e~~np-~~si~g~~~~a~ei~~q~-----~~----~~~-----------------~vvv~~gsG~~~~Gi~la  202 (404)
                      +.+|+ .|+.|| +||+|  +|.|..++.++     .+    .|+                 ..||+++|||  +|+++|
T Consensus        93 ~~v~lKlE~~nP~tGSfK--dRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~~~~~~~~~Vv~aSsGN--~G~slA  168 (431)
T TIGR02035        93 GRLLLKMDSHLPISGSIK--ARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKFKDFFSRYSIAVGSTGN--LGLSIG  168 (431)
T ss_pred             ceEEEEecccCCccCCcH--HHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhhhhcccCceEEEECccH--HHHHHH
Confidence            45776 899999 99999  99999887642     11    122                 3789999999  999999


Q ss_pred             HHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCC--c-cc-----c----ccCCCCcccccccCccccCcEEecChHHHH
Q psy14801        203 IKEKCPSCKLVGADPFGSILAQPQSLNDVPENQI--S-YN-----E----VEGIGYSFAATTLDRNVIDQWGKCGDKDTF  270 (404)
Q Consensus       203 ~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~--~-~~-----~----~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~  270 (404)
                      +.++..|+++++|+|++.+......+...+....  . .+     .    ....+..++.++.+..++..++...     
T Consensus       169 ~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~~~~~a~~~A~~la~~~~~~~~~d~~n~~n~~aG~~T~-----  243 (431)
T TIGR02035       169 IISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYESDYGVAVEEGRKNADADPMCYFVDDENSRNLFLGYAVA-----  243 (431)
T ss_pred             HHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCeEECCCCCcccHHhhHHHH-----
Confidence            9999999999999999886432222221111100  0 00     0    0000011111111111111222333     


Q ss_pred             HHHHHHHHhc-------------CcEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCCCCcc------------cccc
Q psy14801        271 LMARRLIKSE-------------GLLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGVRNYL------------TKFI  324 (404)
Q Consensus       271 ~~~~~l~~~~-------------gi~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~~~~~------------~~~~  324 (404)
                        +.||+++.             .+++-.|+|++++|+.+.+|++ +++.+|++|+|.+...+.            .+.+
T Consensus       244 --g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~~~~~s~~~g~~~~~~~~~~  321 (431)
T TIGR02035       244 --ASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPCMLLGVYTGLHEKISVQDI  321 (431)
T ss_pred             --HHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCHHHHHHHhcCCCcccccccc
Confidence              44444443             2356667889999999999996 789999999996642110            0000


Q ss_pred             ----------------c---hhH---HhhcCccCcHHHHHHh-------------ccchhHHHHHHHHHHh
Q psy14801        325 ----------------S---DEW---MIEKGFLDEAEELEEM-------------IHSGTAMHVACQAAKS  360 (404)
Q Consensus       325 ----------------~---~~~---~~~~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~  360 (404)
                                      .   ..+   ..|..+.++|+++..+             .|||++++++.++++.
T Consensus       322 g~~~~T~AdGlav~~p~~~~~~~~~~~vd~vv~VsD~ei~~a~~~L~~~egi~vEpSsaa~laa~~~l~~~  392 (431)
T TIGR02035       322 GIDNITAADGLAVGRPSGFVGRLMEPLLSGIYTVDDYTLYDLLRILAESEGKRLEPSALAGMEGPVRLLKY  392 (431)
T ss_pred             CCCCCceeccccCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeEcHHHHHHHHHHHHHHhh
Confidence                            0   001   2344456788877664             3899999999888765

This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.

>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.32  E-value=1.1e-12  Score=125.25  Aligned_cols=219  Identities=18%  Similarity=0.162  Sum_probs=134.1

Q ss_pred             HhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc
Q psy14801        147 SQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP  225 (404)
Q Consensus       147 ~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~  225 (404)
                      +..+..+|+ +|..||.++.|  +|.+..++.++.++....|+.+++||  +|.++|..++..|++++++.|.+.+....
T Consensus        20 ~~~~~~i~~K~E~~~ptgs~K--~R~a~~~l~~a~~~~~~~vv~assGN--~g~a~A~~a~~~g~~~~i~~p~~~~~~~~   95 (306)
T PF00291_consen   20 ELGGANIYLKREDLNPTGSFK--DRGAYYLLSRAKEKGGRTVVGASSGN--HGRALAYAAARLGLKCTIVVPEDVSPEKL   95 (306)
T ss_dssp             HCTTSEEEEEEGGGSTTSBTH--HHHHHHHHHHHHHTTTSEEEEESSSH--HHHHHHHHHHHHTCEEEEEEETTSHHHHH
T ss_pred             hccCCeEEEEECCCCCcCCcc--cccchhhhhhccccccceeeeeccCC--ceehhhhhhhhccccceeeeccccccccc
Confidence            334456776 89999999999  99999999988544344568999999  88899988888899999999998643211


Q ss_pred             CCCCCCCCCCC-cccccc---CCCCcccccc---cCcc--ccCcEEecChHHHH----HHHHHHHHhcC------cEecc
Q psy14801        226 QSLNDVPENQI-SYNEVE---GIGYSFAATT---LDRN--VIDQWGKCGDKDTF----LMARRLIKSEG------LLVGG  286 (404)
Q Consensus       226 ~~~~~~~~~~~-~~~~~~---~i~~~~~~~~---~~~~--~~~~~~~v~d~e~~----~~~~~l~~~~g------i~~~~  286 (404)
                      ..+........ ......   ..........   ....  ..+++   +++...    ....|++++.+      +++..
T Consensus        96 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~Ei~~q~~~~d~d~vvv~~  172 (306)
T PF00291_consen   96 KQMRALGAEVILVPGDVEGAFDDAQELAKERAELLSPFNGELNQY---NNPNVIAGYATIGLEIYEQLGKPDPDYVVVPV  172 (306)
T ss_dssp             HHHHHTTCEEEEESSTHHHHHHHHHHHHHHHHHHHHHSTTEESTT---TSHHHHHHHHHHHHHHHHHHTTESESEEEEEE
T ss_pred             cceeeecceEEEccccccccccccccccccccccccccccccCcc---cchhhhhhhhhcchhcccccccccceEEEecC
Confidence            11111111000 000000   0000000000   0000  01122   333332    33456666652      78888


Q ss_pred             chhhHHHHHHHHHHh--cCCCCeEEEEecCCCCCcc-----------c-----cccc------h----hHHhhc---Ccc
Q psy14801        287 SSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYL-----------T-----KFIS------D----EWMIEK---GFL  335 (404)
Q Consensus       287 ~tg~tlag~~~~lk~--~~~~~~vv~v~~~~~~~~~-----------~-----~~~~------~----~~~~~~---~~~  335 (404)
                      |||++++|+.+++++  . |..++++|++.+...+.           +     ..+.      .    .++.+.   .+.
T Consensus       173 GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~  251 (306)
T PF00291_consen  173 GTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIAGLGVPMPFPGELDLELIDEYVGDVVG  251 (306)
T ss_dssp             SSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSSTGGTSSSCTTTTHHHHHHHHETEEEEE
T ss_pred             CchhHHHHHHhhhhhhhc-ccccceeeeccCCccccccccccccccccceeeeecccCCccchhhhhhhhhhhccccccc
Confidence            999999999999999  7 89999999996541110           0     0111      0    112221   245


Q ss_pred             CcHHHHHHh-------------ccchhHHHHHHHHHHhc----CCCCeEEEEEcC
Q psy14801        336 DEAEELEEM-------------IHSGTAMHVACQAAKSL----RPDQRCVVILAD  373 (404)
Q Consensus       336 ~~~~~~~~g-------------~SsGa~~~~a~~~~~~~----~~~~~iv~i~~D  373 (404)
                      ++|+++.+.             .|++++++++++++++.    +++++||+|+||
T Consensus       252 v~d~e~~~a~~~l~~~~gi~~~p~~a~a~aa~~~~~~~~~~~~~~~~~vv~v~tG  306 (306)
T PF00291_consen  252 VSDEEALEAIRELAEREGILVEPSSAAALAAALKLAERGSLAPPAGKRVVVVLTG  306 (306)
T ss_dssp             EEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHTGCHTTTTSEEEEEE-B
T ss_pred             cchHHHHHHHHHHHHHcCcEEcHHHHHHHHHHHHHHHhCCccccCCCeEEEEcCC
Confidence            677666553             38899999999998875    578999999986

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....

>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase

Probab=99.32  E-value=1.8e-11  Score=118.22  Aligned_cols=229  Identities=10%  Similarity=0.001  Sum_probs=132.2

Q ss_pred             HHHHHHhCC--CcEee-cCCCCCC---ChhhHHhhHHHHHHHHhCCC-cCEEEEcc--CCChhHHHHHHHHHHhCCCcEE
Q psy14801        142 AHRIASQMK--NAVVL-DQFRNPN---NPLSHYETTAEEILRDTGGK-VDMIVLGC--GTGGTASGIGRKIKEKCPSCKL  212 (404)
Q Consensus       142 a~~l~~~~~--~~~~~-~e~~np~---~si~g~~~~a~ei~~q~~~~-~~~vvv~~--gsG~~~~Gi~la~~~~~~~~~v  212 (404)
                      ..++++..+  ..+|+ .|+.||.   ++.|  +|.+..++.++..+ .. .|++.  ++||  +|+++|+.++..|+++
T Consensus        20 ~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K--~R~~~~~l~~a~~~G~~-~vvs~ggs~gN--~g~alA~~a~~~Gl~~   94 (337)
T TIGR01274        20 LPRLSQHLGGKVTLYAKREDCNSGLAFGGNK--TRKLEYLIPDAQAQGCT-TLVSIGGIQSN--QTRQVAAVAAHLGMKC   94 (337)
T ss_pred             hHhhHHhcCCCceEEEEccCCcCCcCccchH--HHHHHHHHHHHHHcCCC-EEEECCCCcch--HHHHHHHHHHHcCCcE
Confidence            345555433  25666 8999976   5668  99999999887643 33 44544  4589  9999999999999999


Q ss_pred             EEEcCCCCccc--------ccCCCCCCCCCCCcc-cccc-CCCCcc--cccccCccccCcEEecC----hH----HHHHH
Q psy14801        213 VGADPFGSILA--------QPQSLNDVPENQISY-NEVE-GIGYSF--AATTLDRNVIDQWGKCG----DK----DTFLM  272 (404)
Q Consensus       213 i~V~p~~~~~~--------~~~~~~~~~~~~~~~-~~~~-~i~~~~--~~~~~~~~~~~~~~~v~----d~----e~~~~  272 (404)
                      ++|+|...+..        ....+.......... .... +.....  ...........+++...    ++    -...+
T Consensus        95 ~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~~~~~~~~~~~~G~~~~  174 (337)
T TIGR01274        95 VLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIPAGCSDHPLGGLGFVGF  174 (337)
T ss_pred             EEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEeCCCCCCCccchhHHHHH
Confidence            99988753210        000000011100000 0000 000000  00000000000111111    00    01233


Q ss_pred             HHHHHHh--------cCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcccc----------------------
Q psy14801        273 ARRLIKS--------EGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK----------------------  322 (404)
Q Consensus       273 ~~~l~~~--------~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~----------------------  322 (404)
                      +.||+++        +.+|+..|||++++|+.+.+++..++.+|+.|++.+...+...                      
T Consensus       175 ~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  254 (337)
T TIGR01274       175 AFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQTRAQILRIARNTAEKIGLERDITED  254 (337)
T ss_pred             HHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCCcCcc
Confidence            4444444        3499999999999999999999889999999999775332100                      


Q ss_pred             --ccchhHHhhcCccCcHHHHHHhc--------------cchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcc
Q psy14801        323 --FISDEWMIEKGFLDEAEELEEMI--------------HSGTAMHVACQAAKS--LRPDQRCVVILADGVRN  377 (404)
Q Consensus       323 --~~~~~~~~~~~~~~~~~~~~~g~--------------SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~r  377 (404)
                        .+... ..+..+.++++++++.+              |||.+++++++++++  ++++++|| +++|+|.+
T Consensus       255 ~~~~~~~-~~~~~~~v~d~e~~~a~~~la~~eGi~~ep~ytg~~~aa~~~~~~~g~~~~~~~vv-~~htGG~~  325 (337)
T TIGR01274       255 DVVLDTR-FAYPEYGVPNEGTLEAIRLCAKMEGVLTDPVYEGKSMHGMIEMIRRGEFKEGSNVL-YAHLGGAP  325 (337)
T ss_pred             ceEEecc-ccCCCcCCCCHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHhcCCCCCCCEEE-EEeCCChh
Confidence              01111 12334556666665532              599999999999876  56778888 88999954

This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.

>KOG1250|consensus

Probab=99.06  E-value=5.4e-10  Score=104.93  Aligned_cols=227  Identities=13%  Similarity=0.201  Sum_probs=133.3

Q ss_pred             HHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801        143 HRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS  220 (404)
Q Consensus       143 ~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~  220 (404)
                      ..+++..+..+|+ .|+.-|.+|.|  .|=+..++..+.++ ...-|++++.||  .|.++++.+...++++..|+|...
T Consensus        73 ~~lS~~~g~~vyLK~E~lQpsgSFK--~RGa~~~~~kla~~~~~~gViasSaGN--ha~a~Ayaa~~LgipaTIVmP~~t  148 (457)
T KOG1250|consen   73 VALSKKAGMPVYLKREDLQPSGSFK--IRGAGNALQKLAKQQKKAGVIASSAGN--HAQAAAYAARKLGIPATIVMPVAT  148 (457)
T ss_pred             hhhhhhcCCceEEEehhccccccee--hhhHHHHHHHHHHhhhcCceEEecCcc--HHHHHHHHHHhcCCceEEEecCCC
Confidence            3455555556676 78899999999  88888887776543 244578889999  899999999999999999999988


Q ss_pred             cccccCCCCCCCCCCCcc-ccccCCCCcccccccCccccCcEE-ecChHHHHH----HHHHHH----Hhc-CcEeccchh
Q psy14801        221 ILAQPQSLNDVPENQISY-NEVEGIGYSFAATTLDRNVIDQWG-KCGDKDTFL----MARRLI----KSE-GLLVGGSSG  289 (404)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-~v~d~e~~~----~~~~l~----~~~-gi~~~~~tg  289 (404)
                      +...-+.....++..... .... .+..+ ...+....--.|+ -.++|.||+    ...||.    ... ++++.+|+|
T Consensus       149 p~~kiq~~~nlGA~Vil~G~~~d-eAk~~-a~~lAke~gl~yI~pfDhP~I~aGqgTig~EIl~ql~~~~~AI~vpVGGG  226 (457)
T KOG1250|consen  149 PLMKIQRCRNLGATVILSGEDWD-EAKAF-AKRLAKENGLTYIPPFDHPDIWAGQGTIGLEILEQLKEPDGAIVVPVGGG  226 (457)
T ss_pred             hHHHHHHHhccCCEEEEecccHH-HHHHH-HHHHHHhcCceecCCCCCchhhcCcchHHHHHHHhhcCCCCeEEEecCCc
Confidence            654322222222111000 0000 00000 0000000000011 123444431    122333    234 589999999


Q ss_pred             hHHHHHHHHHHhcCCCCeEEEEecCCCCCc-----------ccc-----------ccchh-H-----HhhcCccCcHHHH
Q psy14801        290 TAMHVACQAAKSLRPDQRCVVILADGVRNY-----------LTK-----------FISDE-W-----MIEKGFLDEAEEL  341 (404)
Q Consensus       290 ~tlag~~~~lk~~~~~~~vv~v~~~~~~~~-----------~~~-----------~~~~~-~-----~~~~~~~~~~~~~  341 (404)
                      |-++|+..++|+..|..+|+.|+|.+...+           ++.           .++.+ +     ..|...+++++++
T Consensus       227 GLiaGIat~vk~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vvvV~~~ei  306 (457)
T KOG1250|consen  227 GLIAGIATGVKRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVVVVEDDEI  306 (457)
T ss_pred             hhHHHHHHHHHHhCCCCceEEEeecCcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceEEEeccHHH
Confidence            999999999999999999999999764211           111           01111 1     2334455666555


Q ss_pred             HHhc-------------cchhHHHHHHHHHHhcCCCCeEEEEEcCCC
Q psy14801        342 EEMI-------------HSGTAMHVACQAAKSLRPDQRCVVILADGV  375 (404)
Q Consensus       342 ~~g~-------------SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g  375 (404)
                      ...+             +.|+++++.......-.+++++|.+++-++
T Consensus       307 ~aaI~~l~edek~vvEpAgaaaLaai~~~~~~~lk~~~vv~ilsG~n  353 (457)
T KOG1250|consen  307 AAAILRLFEDEKMVVEPAGAAALAAIYSGKLNHLKGKKVVSILSGGN  353 (457)
T ss_pred             HHHHHHHHHhhhheeccchHHHHHHHHhccccccCCceEEeecccCC
Confidence            4432             667788877777222246788888876443

>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]

Probab=98.96  E-value=1.7e-09  Score=102.03  Aligned_cols=167  Identities=14%  Similarity=0.122  Sum_probs=105.9

Q ss_pred             HHHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhC-C-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCC
Q psy14801        142 AHRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTG-G-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPF  218 (404)
Q Consensus       142 a~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~-~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~  218 (404)
                      ...+++..+..+|+ .|..-|.+|.|  -|=|+..+.++. + +...-||++++||  -|-+.|+.++..|++.++|||.
T Consensus        31 s~~Ls~~~g~~v~lK~E~lQ~~gSFK--~RGA~n~i~~Ls~e~~~~~gViaaSaGN--HaQGvA~aa~~lGi~a~IvMP~  106 (347)
T COG1171          31 SPSLSERLGAEIYLKRENLQPVGSFK--IRGAYNKLSSLSEEEERAAGVIAASAGN--HAQGVAYAAKRLGIKATIVMPE  106 (347)
T ss_pred             chhhHHhhCceEEEeeccCcccccch--hhhHHHHHHhcChhhhhcCceEEecCCc--HHHHHHHHHHHhCCCEEEEecC
Confidence            34556655667777 88888999999  777999888875 2 2444589999999  6666777788889999999999


Q ss_pred             CCcccccCCCCCCCCCCC--c----------cccccCCCCcccccccCccccCcEEecChHHHHHHHHHHHHh-cCcEec
Q psy14801        219 GSILAQPQSLNDVPENQI--S----------YNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKS-EGLLVG  285 (404)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~--~----------~~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~-~gi~~~  285 (404)
                      +++...-...........  +          ....+..+..+++. ++..++-+....-..|+   .+++.+. +.+++.
T Consensus       107 ~tp~~Kv~a~r~~GaeVil~g~~~dda~~~a~~~a~~~G~~~i~p-fD~p~viAGQGTi~lEi---leq~~~~~d~v~vp  182 (347)
T COG1171         107 TTPKIKVDATRGYGAEVILHGDNFDDAYAAAEELAEEEGLTFVPP-FDDPDVIAGQGTIALEI---LEQLPDLPDAVFVP  182 (347)
T ss_pred             CCcHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHHcCCEEeCC-CCCcceeecccHHHHHH---HHhccccCCEEEEe
Confidence            986432222221111100  0          00011112222221 11111111111222333   3343333 668999


Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14801        286 GSSGTAMHVACQAAKSLRPDQRCVVILADGV  316 (404)
Q Consensus       286 ~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~  316 (404)
                      .|+||-++|+.-++|.+.|+.+|+.|+|.+.
T Consensus       183 vGGGGLisGia~~~k~~~p~~~vIGVEp~~a  213 (347)
T COG1171         183 VGGGGLISGIATALKALSPEIKVIGVEPEGA  213 (347)
T ss_pred             cCccHHHHHHHHHHHHhCCCCeEEEEeeCCC
Confidence            9999999999999999999999999999764

>TIGR03844 cysteate_syn cysteate synthase

Probab=98.78  E-value=3.5e-08  Score=96.89  Aligned_cols=218  Identities=13%  Similarity=0.004  Sum_probs=122.1

Q ss_pred             cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCC
Q psy14801        156 DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQ  235 (404)
Q Consensus       156 ~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~  235 (404)
                      .|+.||++|.|  ||.+..++..+.+.-...|+++++||  +|.++|+.++..|+++++++|.+.+..............
T Consensus        91 ~E~~npTGSFK--dRga~~~i~~a~~~g~~~Vv~aSsGN--~g~alA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~v  166 (398)
T TIGR03844        91 RGAFMRTCSFK--ELEALPTMQRLKERGGKTLVVASAGN--TGRAFAEVSAITGQPVILVVPKSSADRLWTTEPASSVLL  166 (398)
T ss_pred             hhccCCccccH--HHHHHHHHHHHHHcCCCEEEEECCCH--HHHHHHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEE
Confidence            35589999999  99999988877643355789999999  999999999999999999999985321000001100000


Q ss_pred             CccccccC-CCCc-ccccccCccccCcEE--ecChHHHH----HHHHHHHHhc-----CcEeccchhhHHHHHHHHHHhc
Q psy14801        236 ISYNEVEG-IGYS-FAATTLDRNVIDQWG--KCGDKDTF----LMARRLIKSE-----GLLVGGSSGTAMHVACQAAKSL  302 (404)
Q Consensus       236 ~~~~~~~~-i~~~-~~~~~~~~~~~~~~~--~v~d~e~~----~~~~~l~~~~-----gi~~~~~tg~tlag~~~~lk~~  302 (404)
                      .   ...+ .... .....+... .+.+.  ...++..+    ..+.|++++.     .+++..|+|..+.|+.+.++++
T Consensus       167 v---~v~g~~d~a~~~a~~~a~~-~g~~~~~~~~~p~~ieG~~Ti~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l  242 (398)
T TIGR03844       167 V---TVDGDYTDAIALADRIATL-PGFVPEGGARNVARRDGMGTVMLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRL  242 (398)
T ss_pred             E---ECCCCHHHHHHHHHHHHHh-CCccccCCCCCHHHHhhHHHHHHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHH
Confidence            0   0000 0000 000000000 00000  11133222    2234566554     3777777776777776655542


Q ss_pred             C-------CCCeEEEEecCCCCCc---------c-------c-------cccchh--------------H--Hh---hcC
Q psy14801        303 R-------PDQRCVVILADGVRNY---------L-------T-------KFISDE--------------W--MI---EKG  333 (404)
Q Consensus       303 ~-------~~~~vv~v~~~~~~~~---------~-------~-------~~~~~~--------------~--~~---~~~  333 (404)
                      .       .--++++|.+.+....         .       +       +.+.+.              +  +.   +..
T Consensus       243 ~~~g~i~~~~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~~~~~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~  322 (398)
T TIGR03844       243 IEDGRFGSKLPRLHLAQNLPFVPMVNAWQEGRREIIPESDMPDAENSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQM  322 (398)
T ss_pred             HHcCCccCCCCCEEEEEcCCchHHHHHHHcCCCccccccCCccccccccceecceeeeCCCCcchHHHHHHHHHHhCCEE
Confidence            1       1125688887553110         0       0       111110              0  11   123


Q ss_pred             ccCcHHHHHHhc-------------cchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchhhc
Q psy14801        334 FLDEAEELEEMI-------------HSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLTK  381 (404)
Q Consensus       334 ~~~~~~~~~~g~-------------SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl~~  381 (404)
                      +.++|+++.++.             +|++++++..++.++  +.++++||++++=+|.|+|..
T Consensus       323 v~Vsd~eI~~A~~~l~~~~gi~vEpa~A~alAal~k~~~~g~i~~~~~Vv~vlTG~glK~~~~  385 (398)
T TIGR03844       323 YGVSNKEAVSAGKLFEESEGIDILPAAAVAVAALVKAVESGFIGPDDDILLNITGGGYKRLRE  385 (398)
T ss_pred             EEECHHHHHHHHHHHHhhCCccccccHHHHHHHHHHHHHhCCCCCCCeEEEEECCcchhhHHh
Confidence            456776665532             677778777777665  557899999999999888764

Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.

>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase

Probab=98.70  E-value=1.5e-07  Score=92.47  Aligned_cols=76  Identities=17%  Similarity=0.158  Sum_probs=54.5

Q ss_pred             HHHHHHhCC-CcEee-cCCCC-CCChhhHHhhHHHHHHHHh-----C--------------C----CcCEEEEccCCChh
Q psy14801        142 AHRIASQMK-NAVVL-DQFRN-PNNPLSHYETTAEEILRDT-----G--------------G----KVDMIVLGCGTGGT  195 (404)
Q Consensus       142 a~~l~~~~~-~~~~~-~e~~n-p~~si~g~~~~a~ei~~q~-----~--------------~----~~~~vvv~~gsG~~  195 (404)
                      +..+++..+ ..+|+ +|..+ |.+|.|  +|-+...+..+     .              .    .....||++++|| 
T Consensus        47 ~~~L~~~~g~~~v~lK~E~~q~~tGSFK--~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~vv~aSsGN-  123 (396)
T TIGR03528        47 LDNLAKHLGVGSILVKDESYRFGLNAFK--VLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITFVTATDGN-  123 (396)
T ss_pred             hHHHHHHhCCCcEEEeeCCCCCCcCChH--HHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEEEEECccH-
Confidence            445555554 35666 78766 588988  77655444332     0              0    0123789999999 


Q ss_pred             HHHHHHHHHHhCCCcEEEEEcCCCCc
Q psy14801        196 ASGIGRKIKEKCPSCKLVGADPFGSI  221 (404)
Q Consensus       196 ~~Gi~la~~~~~~~~~vi~V~p~~~~  221 (404)
                       +|+++|+.++..|+++++|+|.+.+
T Consensus       124 -~g~alA~~aa~~Gi~~~IvvP~~~~  148 (396)
T TIGR03528       124 -HGRGVAWAANQLGQKSVVYMPKGSA  148 (396)
T ss_pred             -HHHHHHHHHHHcCCCEEEEEeCCCc
Confidence             9999999999999999999999875

Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.

>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family

Probab=98.66  E-value=1.4e-07  Score=92.15  Aligned_cols=169  Identities=11%  Similarity=0.081  Sum_probs=94.3

Q ss_pred             HHHHHHhCC-CcEee-cCCCC-CCChhhHHhhHHHHHHHHhCC--------------------C---cCEEEEccCCChh
Q psy14801        142 AHRIASQMK-NAVVL-DQFRN-PNNPLSHYETTAEEILRDTGG--------------------K---VDMIVLGCGTGGT  195 (404)
Q Consensus       142 a~~l~~~~~-~~~~~-~e~~n-p~~si~g~~~~a~ei~~q~~~--------------------~---~~~vvv~~gsG~~  195 (404)
                      ...+.+..+ ..+|+ +|+.+ |.||.|  +|-+...+.++..                    +   ....|+++++|| 
T Consensus        28 ~~~l~~~~g~~~v~~K~E~~~~~tgSFK--~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~aSsGN-  104 (376)
T TIGR01747        28 LDHLANLLGLKKILVKDESKRFGLNAFK--MLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEKMGQATFATATDGN-  104 (376)
T ss_pred             hHHHHHHhCCCcEEEeeCCCCCCCCChH--HHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhhcCCCEEEEECccH-
Confidence            344555544 34665 88876 478888  6655443332200                    0   145789999999 


Q ss_pred             HHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCcc-ccccC---CCCcccccccCccccC-----cEEecCh
Q psy14801        196 ASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISY-NEVEG---IGYSFAATTLDRNVID-----QWGKCGD  266 (404)
Q Consensus       196 ~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~-~~~~~---i~~~~~~~~~~~~~~~-----~~~~v~d  266 (404)
                       +|+++|+.++..|+++++++|+..+......+.......... .....   ..... ....+..+.+     .+.++ +
T Consensus       105 -~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~~~~~a~~~a~~~-~~~~g~~~~~~~~~~~~~~~-~  181 (376)
T TIGR01747       105 -HGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDMNYDDTVRLAMQM-AQQHGWVVVQDTAWEGYEKI-P  181 (376)
T ss_pred             -HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHH-HHhcCcEEeccccccccccC-C
Confidence             999999999999999999999987532211111111111000 00000   00000 0000000111     11111 1


Q ss_pred             HHH----HHHHHHHHHhcC---------cEeccchhhHHHHHHHHHHhcC-CC-CeEEEEecCCC
Q psy14801        267 KDT----FLMARRLIKSEG---------LLVGGSSGTAMHVACQAAKSLR-PD-QRCVVILADGV  316 (404)
Q Consensus       267 ~e~----~~~~~~l~~~~g---------i~~~~~tg~tlag~~~~lk~~~-~~-~~vv~v~~~~~  316 (404)
                      +.+    -..+.||++|.+         +++..|+|+.++|+.+++++.. +. .+|++|+|.+.
T Consensus       182 ~~ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga  246 (376)
T TIGR01747       182 TWIMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKA  246 (376)
T ss_pred             chHHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCC
Confidence            222    124566766643         8888999999999999887653 33 48999999764

This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).

>KOG1251|consensus

Probab=98.31  E-value=4.8e-06  Score=73.91  Aligned_cols=213  Identities=14%  Similarity=0.128  Sum_probs=121.8

Q ss_pred             cEeecCCCCCCChhhHHhhHHHHHHHHhC--CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCC
Q psy14801        152 AVVLDQFRNPNNPLSHYETTAEEILRDTG--GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLN  229 (404)
Q Consensus       152 ~~~~~e~~np~~si~g~~~~a~ei~~q~~--~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~  229 (404)
                      .||-+|.+.-.|+.|  -|-|+.-+.++.  +++. =|+.-+|||  -|-++++.++..|++..+|+|.+++...-....
T Consensus        42 vfFKcE~fQKtGaFK--fRGAlNav~~l~~ek~~k-gvithSSGN--HaqAlalaAk~~giPa~IVvP~~AP~~Kv~a~~  116 (323)
T KOG1251|consen   42 VFFKCENFQKTGAFK--FRGALNAVSSLKAEKRAK-GVITHSSGN--HAQALALAAKILGIPATIVVPKDAPICKVAATR  116 (323)
T ss_pred             eEeehhhhhhcccee--hhhhHHHHHHhhHhhhcC-ceEeecCCc--HHHHHHHHHHhcCCCeEEEecCCChHHHHHHHH
Confidence            355566666667777  777777666654  2333 467788999  666777777888899999999998643211111


Q ss_pred             CCCCCC-------Cc-----cccccCCCCcccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHH
Q psy14801        230 DVPENQ-------IS-----YNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQ  297 (404)
Q Consensus       230 ~~~~~~-------~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~  297 (404)
                      .+....       ..     ....+..+...++    +.+...++.-...-+.+-..++-+.+.+|+..|+||-++|+.-
T Consensus       117 ~Yga~ii~~e~~~~sRE~va~~ltee~g~~~i~----Py~~p~vIaGqgTiA~ElleqVg~iDalfvpvgGGGllSgvAl  192 (323)
T KOG1251|consen  117 GYGANIIFCEPTVESRESVAKDLTEETGYYLIH----PYNHPSVIAGQGTIALELLEQVGEIDALFVPVGGGGLLSGVAL  192 (323)
T ss_pred             hcCceEEEecCccchHHHHHHHHHHhcCcEEeC----CCCCcceeeccchHHHHHHHhhCccceEEEeecCcchhhHHHH
Confidence            111100       00     0001111111111    1111122222233333333333344679999999999999999


Q ss_pred             HHHhcCCCCeEEEEecCCCCC----c---------cccccch----------hH-----HhhcCccCcHHHHHHhc----
Q psy14801        298 AAKSLRPDQRCVVILADGVRN----Y---------LTKFISD----------EW-----MIEKGFLDEAEELEEMI----  345 (404)
Q Consensus       298 ~lk~~~~~~~vv~v~~~~~~~----~---------~~~~~~~----------~~-----~~~~~~~~~~~~~~~g~----  345 (404)
                      ..+.+.|+.+|.+++|..+..    +         .++.+-|          .|     ..|+.+.++++++.++.    
T Consensus       193 aa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~lG~~t~pIir~~vddi~Tv~e~Ei~~~lk~~~  272 (323)
T KOG1251|consen  193 AAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSHLGPLTWPIIRDLVDDILTVSEDEIKEALKLIW  272 (323)
T ss_pred             HHhccCCCcEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhhhccccccchHHHHHHhhhheeecHHHHHHHHHHHH
Confidence            999999999999999954311    1         1111111          12     23455667888876643    


Q ss_pred             ---------cchhHHHHHHHHHHhcCCCCeEEEEEcCC
Q psy14801        346 ---------HSGTAMHVACQAAKSLRPDQRCVVILADG  374 (404)
Q Consensus       346 ---------SsGa~~~~a~~~~~~~~~~~~iv~i~~D~  374 (404)
                               +.+..+++++-...+ ...++|.+|++-+
T Consensus       273 ermK~~vEPTa~lgfAavl~~k~~-~~~K~igIiLsGG  309 (323)
T KOG1251|consen  273 ERMKVVVEPTAALGFAAVLSHKFA-LNIKRIGIILSGG  309 (323)
T ss_pred             HHHheeeccchhHHHHHHHhhhHH-hccCceEEEEeCC
Confidence                     444555555554333 2478999998843

>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]

Probab=97.73  E-value=0.00017  Score=70.64  Aligned_cols=223  Identities=15%  Similarity=0.180  Sum_probs=120.5

Q ss_pred             cEeecCCCCCCChhhHHhhHHHHHHHHhCCCcC-EEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC-CcccccCCCC
Q psy14801        152 AVVLDQFRNPNNPLSHYETTAEEILRDTGGKVD-MIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG-SILAQPQSLN  229 (404)
Q Consensus       152 ~~~~~e~~np~~si~g~~~~a~ei~~q~~~~~~-~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~-~~~~~~~~~~  229 (404)
                      .|+..+|.||+++.|  ||...-++..+. ..+ ..|++++|||  ||.+++......|++++++-|.+ .+......+.
T Consensus        96 lyvk~~~~nPT~SFK--Drg~~~~~~~~~-~~g~~~I~~ASSGn--TgAs~aaya~rag~~v~Vl~P~g~vs~~k~~q~~  170 (411)
T COG0498          96 LYVKELGHNPTGSFK--DRGMTVLVSLAK-ELGAKTILCASSGN--TGASAAAYAARAGLKVFVLYPKGKVSPGKLAQML  170 (411)
T ss_pred             eehhhhccCCCcchh--hhhHHHHHHHHH-HhcCCEEEEeCCch--HHHHHHHHhccCCCeEEEEecCCCCCHHHHHHHH
Confidence            344589999999998  887765555544 233 7899999999  88888888889999999999998 3221111111


Q ss_pred             CCCCCCCccccccCCCC---cccccccC-ccccCcE--EecChHH-----HHHHHHHHH--HhcCcEeccchhhHHHHHH
Q psy14801        230 DVPENQISYNEVEGIGY---SFAATTLD-RNVIDQW--GKCGDKD-----TFLMARRLI--KSEGLLVGGSSGTAMHVAC  296 (404)
Q Consensus       230 ~~~~~~~~~~~~~~i~~---~~~~~~~~-~~~~~~~--~~v~d~e-----~~~~~~~l~--~~~gi~~~~~tg~tlag~~  296 (404)
                      ......   ..+.|--.   ..+....+ ..+....  +|..--|     .++...++.  ..+.+++-.|.++.+.|+.
T Consensus       171 ~~ga~~---i~v~G~fDda~~~vk~~~~~~~~~~~~nsiNp~rlegq~t~~fe~~~ql~~~~p~~v~vPvGn~gni~a~~  247 (411)
T COG0498         171 TLGAHV---IAVDGNFDDAQELVKEAANREGLLSAVNSINPYRLEGQKTYAFEIAEQLGWKAPDHVVVPVGNGGNLLAIY  247 (411)
T ss_pred             hcCCEE---EEEcCcHHHHHHHHHHHHhhCCceeeccccCHHHhhhhhhhHhHHHHHhCCCCCCeEEEeCCchHHHHHHH
Confidence            100000   00011000   00000000 0000000  0000000     022222222  2234778889999999999


Q ss_pred             HHHHhcCCCCe------EEEEecCCCC------C---ccccccch--------hH------Hhhc---CccCcHHHHHHh
Q psy14801        297 QAAKSLRPDQR------CVVILADGVR------N---YLTKFISD--------EW------MIEK---GFLDEAEELEEM  344 (404)
Q Consensus       297 ~~lk~~~~~~~------vv~v~~~~~~------~---~~~~~~~~--------~~------~~~~---~~~~~~~~~~~g  344 (404)
                      +..++..+-.+      ...+.+.+..      +   .....+.+        .|      +...   ...++|++....
T Consensus       248 ~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~~~~~~~T~a~am~I~~p~n~~r~l~a~~es~g~~~~vsdeEi~~a  327 (411)
T COG0498         248 KGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKEGRETPETIAPAMDIGNPSNWERALFALRESGGLAVAVSDEEILEA  327 (411)
T ss_pred             HHHHhcccccchhcCchhhhhhHhhccchhhhcccccccccccccccccCCCCCHHHHHHHHHhcCCceEEeCHHHHHHH
Confidence            88887544322      2222222210      0   01111111        11      1111   234677766553


Q ss_pred             c-------------cchhHHHHHHHHHHh-cCCCCeEEEEEcCCCcchhhcc
Q psy14801        345 I-------------HSGTAMHVACQAAKS-LRPDQRCVVILADGVRNYLTKF  382 (404)
Q Consensus       345 ~-------------SsGa~~~~a~~~~~~-~~~~~~iv~i~~D~g~rYl~~~  382 (404)
                      .             +|++++++..++.++ +.++.++|+++.=+|.|+.+++
T Consensus       328 ~~~l~~~eG~~~eP~sA~ava~l~k~~~~~i~~~~~vV~v~Tg~~~K~~~~v  379 (411)
T COG0498         328 IKLLAEREGILIEPHSAVAVAALLKLREKIIDPDETVVLVLTGHGLKFPDTV  379 (411)
T ss_pred             HHHHHHhCCcccCccHHHHHHHHHHHHHhhcCCCCeEEEEecCCcccChhHH
Confidence            2             778888888887764 4567899999999999999874

>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]

Probab=97.72  E-value=0.00025  Score=65.60  Aligned_cols=239  Identities=15%  Similarity=0.107  Sum_probs=140.8

Q ss_pred             HHHHHHHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEc
Q psy14801        138 MIAGAHRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGAD  216 (404)
Q Consensus       138 ~~~~a~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~  216 (404)
                      .+-.|+++.+..+..+|+ .|-.|-+++-|-.-.++.-++.+-.+ ..-+|.|.|.|-  -|++.|..++..+.++++.|
T Consensus        58 pLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMG-K~riIAETGAGQ--HGVAtAta~A~fgl~C~iYM  134 (396)
T COG0133          58 PLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMG-KTRIIAETGAGQ--HGVATATAAALFGLECVIYM  134 (396)
T ss_pred             hhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhC-CceEEeecCCCc--ccHHHHHHHHHhCCceEEEe
Confidence            345688888877767777 77788877767566777666655332 356999999999  99999999999999998887


Q ss_pred             CCCCcccc-cC--CCCCCCCCC----Cc-cccccCCCC--cccccccCc---------------cccCcEEecChHHHHH
Q psy14801        217 PFGSILAQ-PQ--SLNDVPENQ----IS-YNEVEGIGY--SFAATTLDR---------------NVIDQWGKCGDKDTFL  271 (404)
Q Consensus       217 p~~~~~~~-~~--~~~~~~~~~----~~-~~~~~~i~~--~~~~~~~~~---------------~~~~~~~~v~d~e~~~  271 (404)
                      -.....-. ..  .+....+..    .+ .+..+.+..  ..|..+++.               ..+..+-.|-..|+..
T Consensus       135 Ga~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~vIG~E~k~  214 (396)
T COG0133         135 GAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEAKA  214 (396)
T ss_pred             cchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHHHhHHHHH
Confidence            65432100 00  000000000    00 000000000  001111110               1111222333444444


Q ss_pred             HHHHHHHhcC-----cEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCC----------------------CCccc---
Q psy14801        272 MARRLIKSEG-----LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGV----------------------RNYLT---  321 (404)
Q Consensus       272 ~~~~l~~~~g-----i~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~----------------------~~~~~---  321 (404)
                      ++.   +.+|     +++++++|.+-.|+..-+-. .++.+.+.|++++-                      ..|+.   
T Consensus       215 Qil---e~egrlPD~vvACVGGGSNAiG~F~~Fi~-d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~tyllQd~  290 (396)
T COG0133         215 QIL---EKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKTYLLQDE  290 (396)
T ss_pred             HHH---HHhCCCCCeEEEeccCCcchhhhcccccC-CCCceEEEeccCcCccCCCccceeecCCCceeeecccceeeEcC
Confidence            443   4445     89999999998887543322 36789999998651                      01110   


Q ss_pred             ----------------cccc--hhHHhhcC----ccCcHHHHHHhc-------------cchhHHHHHHHHHHhcCCCCe
Q psy14801        322 ----------------KFIS--DEWMIEKG----FLDEAEELEEMI-------------HSGTAMHVACQAAKSLRPDQR  366 (404)
Q Consensus       322 ----------------~~~~--~~~~~~~~----~~~~~~~~~~g~-------------SsGa~~~~a~~~~~~~~~~~~  366 (404)
                                      ++++  ..|+.+..    ..++|+++.+++             -|.-+++.+.+++++++++..
T Consensus       291 ~GQi~e~hSISAGLDYPgVGPeha~l~~~gRa~y~~itD~EAl~af~~L~r~EGIIPALESsHAlA~a~kla~~~~~~~~  370 (396)
T COG0133         291 DGQILESHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDEEALEAFQLLSRLEGIIPALESSHALAYALKLAPKLPKDEI  370 (396)
T ss_pred             CCCEeeeeeeccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHhchhcCCCcE
Confidence                            1111  23444432    236777766532             567788899999999888888


Q ss_pred             EEEEEcCCCcchhhccC
Q psy14801        367 CVVILADGVRNYLTKFI  383 (404)
Q Consensus       367 iv~i~~D~g~rYl~~~~  383 (404)
                      ||+=+.-+|+|=+.++.
T Consensus       371 ivvnlSGRGDKDv~tv~  387 (396)
T COG0133         371 IVVNLSGRGDKDVFTVA  387 (396)
T ss_pred             EEEEccCCCcccHHHHH
Confidence            88888889998887754

>KOG1395|consensus

Probab=97.35  E-value=0.0021  Score=60.32  Aligned_cols=79  Identities=11%  Similarity=0.058  Sum_probs=56.0

Q ss_pred             HHHHHHHHHhC--CCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEE
Q psy14801        139 IAGAHRIASQM--KNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGA  215 (404)
Q Consensus       139 ~~~a~~l~~~~--~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V  215 (404)
                      +.+|+||.+..  +..+|+ .|-.|++||-|-.-.++..++..-. ....+|.|.|.|-  -|+++|+.++..|.+++..
T Consensus       125 L~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~Qallakrl-GkknviaETGAGQ--hGvatA~a~a~FGl~C~v~  201 (477)
T KOG1395|consen  125 LIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRL-GKKNVIAETGAGQ--HGVATATACAKFGLDCTVY  201 (477)
T ss_pred             hHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHh-cccceeeccCCCc--cchHHHHHHHHhCCceEEE
Confidence            34466665533  345666 8889999987755555555554322 2356899999999  9999999999988888887


Q ss_pred             cCCCC
Q psy14801        216 DPFGS  220 (404)
Q Consensus       216 ~p~~~  220 (404)
                      |-.++
T Consensus       202 mgAed  206 (477)
T KOG1395|consen  202 MGAED  206 (477)
T ss_pred             echhH
Confidence            76554

>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]

Probab=91.44  E-value=2.1  Score=40.43  Aligned_cols=65  Identities=11%  Similarity=-0.065  Sum_probs=45.4

Q ss_pred             EeecCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801        153 VVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS  220 (404)
Q Consensus       153 ~~~~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~  220 (404)
                      ||-.|...|.||-|-...+|..-....+ ....++-+.|.|-  -|.++++.++..+.++...|...+
T Consensus        98 YyK~Eg~tptGSHKiNTAlAqaYyak~e-g~~rl~TETGAGQ--WGsAlslA~alf~lk~~V~Mvr~S  162 (432)
T COG1350          98 YYKYEGVTPTGSHKINTALAQAYYAKKE-GAKRLTTETGAGQ--WGSALSLAAALFGLKATVFMVRVS  162 (432)
T ss_pred             EEEecccCCCCCCCcchHHHHHHHHHhc-CceeeecccCCch--HHHHHHHHHHHhCceeEEEEEehh
Confidence            4447888898887733333333333333 3556788888888  999999999988888887776544

>KOG2616|consensus

Probab=91.32  E-value=0.43  Score=42.20  Aligned_cols=57  Identities=7%  Similarity=0.218  Sum_probs=50.9

Q ss_pred             ecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCc
Q psy14801        263 KCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNY  319 (404)
Q Consensus       263 ~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~  319 (404)
                      .|+|.|..+++..+|+..+++.+|+|+.+.-...+.+.+..|+..+++..|.++.+|
T Consensus       150 ~vS~ee~~~ti~k~yes~~YiLdPHTAVav~~~~r~idkt~ps~~~i~lstAh~aKF  206 (266)
T KOG2616|consen  150 RVSNEETTQTIKKIYESNHYILDPHTAVAVNYHYRQIDKTQPSIPYICLSTAHPAKF  206 (266)
T ss_pred             hcCcHHHHHHHHHHhccCCeeecCchHHHHHHHHHHHhccCCCCceEEecccChhhh
Confidence            589999999999999999999999999999988888877778888999999887665

>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]

Probab=91.02  E-value=1.5  Score=41.09  Aligned_cols=53  Identities=19%  Similarity=0.156  Sum_probs=40.4

Q ss_pred             hHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14801        266 DKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRN  318 (404)
Q Consensus       266 d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~  318 (404)
                      -.|+.++.+++.+-+-+|+.++||+|.||++-.+....++.+|+.+.+.....
T Consensus       168 a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~  220 (323)
T COG2515         168 ALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPE  220 (323)
T ss_pred             HHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHH
Confidence            34555555544444568999999999999998888788899999999866543

>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis

Probab=90.46  E-value=0.66  Score=46.72  Aligned_cols=65  Identities=20%  Similarity=0.235  Sum_probs=46.4

Q ss_pred             CcEeecCCCCCCChhhHHhhHHHH---HHHHhCC--CcCEEEEccCCChhHHHHH-HHHHHhCCCcEEEEEcCCC
Q psy14801        151 NAVVLDQFRNPNNPLSHYETTAEE---ILRDTGG--KVDMIVLGCGTGGTASGIG-RKIKEKCPSCKLVGADPFG  219 (404)
Q Consensus       151 ~~~~~~e~~np~~si~g~~~~a~e---i~~q~~~--~~~~vvv~~gsG~~~~Gi~-la~~~~~~~~~vi~V~p~~  219 (404)
                      +.+++..|.||+++.|  |+...-   ++..+..  .-...|+.++||+  ||.+ ++.-+..+++++++..|.+
T Consensus        96 ~~~~lELfhGPT~sFK--D~a~~~l~~l~~~~~~~~~~~~~Il~ATSGd--TG~Aa~aaf~~~~gi~v~Vl~P~g  166 (460)
T cd01560          96 NLYVLELFHGPTLAFK--DMALQFLGRLLEYFLKRRNERITILVATSGD--TGSAAIEGFRGKPNVDVVVLYPKG  166 (460)
T ss_pred             CcEEeeeeeCCCcchH--HhHHHHHHHHHHHHHHhcCCCeEEEEcCCCc--HHHHHHHHHhCcCCCEEEEEEcCC
Confidence            4455678899999988  776543   3443321  2356788999999  7777 3555567899999999987

The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=89.45  E-value=5.5  Score=40.66  Aligned_cols=54  Identities=15%  Similarity=0.198  Sum_probs=44.7

Q ss_pred             CCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q psy14801         71 LKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQ  127 (404)
Q Consensus        71 ~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~  127 (404)
                      ..|+.+|+.-+.|..|.+.+..|+.+|-+++++   +..+.++++.+.+|++.+.++
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~---D~~~~rle~aeslGA~~v~i~  215 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAF---DTRPEVAEQVESMGAEFLELD  215 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEEec
Confidence            346789999999999999999999999864443   456788999999999966554

>PRK09225 threonine synthase; Validated

Probab=89.13  E-value=0.93  Score=45.67  Aligned_cols=64  Identities=20%  Similarity=0.301  Sum_probs=45.3

Q ss_pred             cEeecCCCCCCChhhHHhhHHHH---HHHHhCCCcCEEEEccCCChhHHHHHH-HHHHhCCCcEEEEEcCCC
Q psy14801        152 AVVLDQFRNPNNPLSHYETTAEE---ILRDTGGKVDMIVLGCGTGGTASGIGR-KIKEKCPSCKLVGADPFG  219 (404)
Q Consensus       152 ~~~~~e~~np~~si~g~~~~a~e---i~~q~~~~~~~vvv~~gsG~~~~Gi~l-a~~~~~~~~~vi~V~p~~  219 (404)
                      .+++.-|.||+++.|  |+...-   ++..+.+.-...|+.++||+  ||-+. +--+..+++++++..|.+
T Consensus        98 ~~~lELfhGPT~sFK--D~a~~~l~~~l~~a~~~~~~~Il~ATSGd--tG~Aa~aaf~~~~gi~~~V~~P~g  165 (462)
T PRK09225         98 LYVLELFHGPTLAFK--DFALQFLAQLLEYVLKGEKITILGATSGD--TGSAAAEAFRGKPNVRVVILYPKG  165 (462)
T ss_pred             ceeHhhccCCccchh--hhHHHHHHHHHHHHHhCCCcEEEEcCCCc--HHHHHHHHHhCcCCCEEEEEEcCC
Confidence            344467889999988  776543   45444322245788899999  77665 344557899999999987

>cd08230 glucose_DH Glucose dehydrogenase

Probab=87.58  E-value=3.8  Score=39.64  Aligned_cols=54  Identities=17%  Similarity=0.243  Sum_probs=43.2

Q ss_pred             CCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801         71 LKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII  124 (404)
Q Consensus        71 ~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~  124 (404)
                      .+++++|+..++|..|...+..++.+|.+++++.....++.|++.++.+|++.+
T Consensus       170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v  223 (355)
T cd08230         170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV  223 (355)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence            346677777778999999999999999986666554456788999999999864

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=86.14  E-value=5.2  Score=37.27  Aligned_cols=58  Identities=22%  Similarity=0.182  Sum_probs=43.9

Q ss_pred             HHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801         66 ETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR  125 (404)
Q Consensus        66 ~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~  125 (404)
                      .++....++++|+..+.|..|..++..|+.+|.+.++++  ..++.|++.++.+|++.+.
T Consensus       113 l~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i  170 (280)
T TIGR03366       113 LEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATALA  170 (280)
T ss_pred             HHhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEec
Confidence            334334577888777889999999999999999855554  4467888899999996543

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>KOG2862|consensus

Probab=84.58  E-value=18  Score=34.30  Aligned_cols=91  Identities=18%  Similarity=0.218  Sum_probs=61.9

Q ss_pred             CCEEEecCCChHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCc
Q psy14801         74 GYTIVEPSSGNTGIGLAMVAAI-KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNA  152 (404)
Q Consensus        74 ~~~vv~~ssGN~g~a~A~~a~~-~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~  152 (404)
                      +.+++.++||..|.-.|+.--. .|=++.++.-..-+..-.+..+.+|++|..++.+  ....-......+.+++..+..
T Consensus        68 ~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~--~G~~~~le~i~~~lsqh~p~~  145 (385)
T KOG2862|consen   68 AQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEAD--IGQAVPLEEITEKLSQHKPKA  145 (385)
T ss_pred             CceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecC--cccCccHHHHHHHHHhcCCce
Confidence            4789999999888665543322 2556666655455566678889999999999763  333333445567788877778


Q ss_pred             EeecCCCCCCChhh
Q psy14801        153 VVLDQFRNPNNPLS  166 (404)
Q Consensus       153 ~~~~e~~np~~si~  166 (404)
                      +++.+.+..++...
T Consensus       146 vfv~hgdsSTgV~q  159 (385)
T KOG2862|consen  146 VFVTHGDSSTGVLQ  159 (385)
T ss_pred             EEEEecCccccccc
Confidence            88877666665544

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=82.09  E-value=5.5  Score=38.33  Aligned_cols=61  Identities=25%  Similarity=0.274  Sum_probs=50.5

Q ss_pred             HHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q psy14801         64 DAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQ  127 (404)
Q Consensus        64 ~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~  127 (404)
                      +++++...+||+.|...+-|-.|.....+|+.+|.+++.+   +.++.|++..+.+||+.+...
T Consensus       157 ~alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~---~~~~~K~e~a~~lGAd~~i~~  217 (339)
T COG1064         157 RALKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAI---TRSEEKLELAKKLGADHVINS  217 (339)
T ss_pred             eehhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEE---eCChHHHHHHHHhCCcEEEEc
Confidence            3455567789999999999977777778999999888887   467899999999999988764

>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6

Probab=82.05  E-value=27  Score=34.37  Aligned_cols=128  Identities=16%  Similarity=0.196  Sum_probs=73.4

Q ss_pred             EEecCCC-hHHHHHHHHHHHcCCeEEEEecC-CCC----HHHHHHHHHcCC-EEEEeCCCCCCCChhhHH-HHHHHHHHh
Q psy14801         77 IVEPSSG-NTGIGLAMVAAIKGYKMVVVMPM-KMS----KEKVYTMKALGA-KIIRTQNDKSYDHPEGMI-AGAHRIASQ  148 (404)
Q Consensus        77 vv~~ssG-N~g~a~A~~a~~~G~~~~iv~p~-~~~----~~k~~~l~~~Ga-~v~~v~~~~~~~~~~~~~-~~a~~l~~~  148 (404)
                      |+..|+| ++...+.+...+.+++++.|.-+ +.+    ..-.+....+|| +++.++..      ++.. +.+...-+.
T Consensus         1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r------~ef~~~~i~~aI~a   74 (388)
T PF00764_consen    1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDAR------DEFAEDYIFPAIKA   74 (388)
T ss_dssp             EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-H------HHHHHHTHHHHHHT
T ss_pred             CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchH------HHHHHHHHHHHHHH
Confidence            5667888 99999999999999999998854 323    233456688899 99988752      2221 112222222


Q ss_pred             CCCcEeecCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEE-ccCCChhHHHHHHHHHHhCCCcEEEE
Q psy14801        149 MKNAVVLDQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVL-GCGTGGTASGIGRKIKEKCPSCKLVG  214 (404)
Q Consensus       149 ~~~~~~~~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv-~~gsG~~~~Gi~la~~~~~~~~~vi~  214 (404)
                        +..|-..|-... + -...-+|..+++-+.+ .-+.+.- +.|.||-..=+-++++...|..++++
T Consensus        75 --nA~Yeg~YpL~t-s-l~RplIa~~~v~~A~~~ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~via  138 (388)
T PF00764_consen   75 --NALYEGRYPLST-S-LARPLIAKKLVEVAREEGADAVAHGCTGKGNDQVRFELSIRALAPELKVIA  138 (388)
T ss_dssp             --T--BTTTB--CC-C-CHHHHHHHHHHHHHHHHT-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred             --HHHhCCCccccc-c-chHHHHHHHHHHHHHHcCCeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence              234433333322 1 2224556666655542 2455555 35679988888889999999888876

3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=80.50  E-value=19  Score=31.88  Aligned_cols=67  Identities=21%  Similarity=0.257  Sum_probs=46.5

Q ss_pred             hHHHHHHHHHHHHh---CCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-HHcCCEEE
Q psy14801         55 DRAAWRMIEDAETA---GVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTM-KALGAKII  124 (404)
Q Consensus        55 ~R~a~~~l~~a~~~---g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l-~~~Ga~v~  124 (404)
                      -+|..+.+..+.+.   +..-.|++++.-+.||.|..+|......|.+++++ .  ....+.+.+ ..+|++.+
T Consensus         6 g~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~-D--~~~~~~~~~~~~~g~~~v   76 (200)
T cd01075           6 AYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVA-D--INEEAVARAAELFGATVV   76 (200)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE-c--CCHHHHHHHHHHcCCEEE
Confidence            36777777777655   44445678999999999999999999999988754 2  234444444 33466543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	404
1m54_A	363	Cystathionine-Beta Synthase: Reduced Vicinal Thiols		1e-87
1m54_A	363	Cystathionine-Beta Synthase: Reduced Vicinal Thiols		5e-13
1jbq_A	435	Structure Of Human Cystathionine Beta-Synthase: A U		3e-87
1jbq_A	435	Structure Of Human Cystathionine Beta-Synthase: A U		6e-13
3pc2_A	527	Full Length Structure Of Cystathionine Beta-Synthas		3e-84
3pc2_A	527	Full Length Structure Of Cystathionine Beta-Synthas		5e-11
2q3d_A	313	2.2 A Resolution Crystal Structure Of O-acetylserin		3e-43
2q3b_A	313	1.8 A Resolution Crystal Structure Of O-Acetylserin		1e-42
1ve1_A	304	Crystal Structure Of T.Th. Hb8 O-Acetylserine Sulfh		1e-42
3rr2_A	314	Structure Of A Cysteine Synthase (O-Acetylserine Su		2e-39
4i1y_A	314	The Structure Of Cysteine Synthase From Mycobacteri		8e-39
1z7w_A	322	Crystal Structure Of O-Acetylserine Sulfhydrylase F		7e-37
2isq_A	320	Crystal Structure Of O-Acetylserine Sulfhydrylase F		8e-37
1z7y_A	322	Crystal Structure Of The Arabidopsis Thaliana O-Ace		3e-36
4aec_A	430	Crystal Structure Of The Arabidopsis Thaliana O-Ace		4e-36
3vbe_A	344	Crystal Structure Of Beta-Cyanoalanine Synthase In		7e-34
3vc3_A	344	Crystal Structure Of Beta-Cyanoalanine Synthase K95		3e-33
1oas_A	322	O-Acetylserine Sulfhydrylase From Salmonella Typhim		1e-32
1o58_A	303	Crystal Structure Of O-Acetylserine Sulfhydrylase (		1e-32
3fca_A	291	Genetic Incorporation Of A Metal-Ion Chelating Amin		1e-32
1d6s_A	322	Crystal Structure Of The K41a Mutant Of O-Acetylser		5e-32
2egu_A	308	Crystal Structure Of O-Acetylserine Sulfhydrase Fro		2e-31
2bhs_A	303	Crystal Structure Of Cysteine Synthase B Length = 3		2e-31
2v03_A	303	High Resolution Structure And Catalysis Of An O- Ac		4e-30
2bht_A	303	Crystal Structure Of O-Acetylserine Sulfhydrylase B		9e-30
2jc3_A	303	Structure Of O-acetylserine Sulfhydrylase B From Sa		3e-28
3dwg_A	325	Crystal Structure Of A Sulfur Carrier Protein Compl		4e-25
3bm5_A	338	Crystal Structure Of O-Acetyl-Serine Sulfhydrylase		2e-24
3dwi_A	323	Crystal Structure Of Mycobacterium Tuberculosis Cys		2e-24
3dki_A	326	2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobac		2e-24
2pqm_A	343	Crystal Structure Of Cysteine Synthase (Oass) From		2e-24
4air_A	354	Leishmania Major Cysteine Synthase Length = 354		7e-24
3t4p_A	334	Crystal Structure Of O-Acetyl Serine Sulfhydrylase		2e-23
1y7l_A	316	O-Acetylserine Sulfhydrylase Complex Length = 316		7e-23

>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols Length = 363

Iteration: 1
 Score =  320 bits (819), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 157/302 (51%), Positives = 207/302 (68%), Gaps = 4/302 (1%)
Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXX 101
           AKCEF N  GS+KDR + RMIEDAE  G LKPG TI+EP+SGNTGIGLA+ AA++GY   
Sbjct: 64  AKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCI 123
Query: 102 XXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
                         ++ALGA+I+RT  +  +D PE  +  A R+ +++ N+ +LDQ+RN 
Sbjct: 124 IVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNA 183
Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGSI 221
           +NPL+HY+TTA+EIL+   GK+DM+V             RK+KEKCP C+++G DP GSI
Sbjct: 184 SNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSI 243
Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
           LA+P+ LN     Q +Y EVEGIGY F  T LDR V+D+W K  D++ F  AR LI  EG
Sbjct: 244 LAEPEELNQT--EQTTY-EVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEG 300
Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEEL 341
           LL GGS+G+ + VA +AA+ L+  QRCVVIL D VRNY+TKF+SD WM++KGFL E E+L
Sbjct: 301 LLCGGSAGSTVAVAVKAAQELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKE-EDL 359
Query: 342 EE 343
            E
Sbjct: 360 TE 361

>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols Length = 363

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 58/99 (58%), Gaps = 13/99 (13%)
Query: 314 DGVRNYLTKFISDEWMIEKGFLDEAEELEEMI----------HSGTAMHVACQAAKSLRP 363
           D +   L + + D+W   K   +EA     M+           +G+ + VA +AA+ L+ 
Sbjct: 266 DFIPTVLDRTVVDKWF--KSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQE 323
Query: 364 DQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEELEE 402
            QRCVVIL D VRNY+TKF+SD WM++KGFL E E+L E
Sbjct: 324 GQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKE-EDLTE 361

>pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique Pyridoxal 5'- Phosphate Dependent Hemeprotein Length = 435

Iteration: 1
 Score =  318 bits (815), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 157/302 (51%), Positives = 207/302 (68%), Gaps = 4/302 (1%)
Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXX 101
           AKCEF N  GS+KDR + RMIEDAE  G LKPG TI+EP+SGNTGIGLA+ AA++GY   
Sbjct: 129 AKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCI 188
Query: 102 XXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
                         ++ALGA+I+RT  +  +D PE  +  A R+ +++ N+ +LDQ+RN 
Sbjct: 189 IVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNA 248
Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGSI 221
           +NPL+HY+TTA+EIL+   GK+DM+V             RK+KEKCP C+++G DP GSI
Sbjct: 249 SNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSI 308
Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
           LA+P+ LN     Q +Y EVEGIGY F  T LDR V+D+W K  D++ F  AR LI  EG
Sbjct: 309 LAEPEELNQT--EQTTY-EVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEG 365
Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEEL 341
           LL GGS+G+ + VA +AA+ L+  QRCVVIL D VRNY+TKF+SD WM++KGFL E E+L
Sbjct: 366 LLCGGSAGSTVAVAVKAAQELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKE-EDL 424
Query: 342 EE 343
            E
Sbjct: 425 TE 426

>pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique Pyridoxal 5'- Phosphate Dependent Hemeprotein Length = 435

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 58/99 (58%), Gaps = 13/99 (13%)
Query: 314 DGVRNYLTKFISDEWMIEKGFLDEAEELEEMI----------HSGTAMHVACQAAKSLRP 363
           D +   L + + D+W   K   +EA     M+           +G+ + VA +AA+ L+ 
Sbjct: 331 DFIPTVLDRTVVDKWF--KSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQE 388
Query: 364 DQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEELEE 402
            QRCVVIL D VRNY+TKF+SD WM++KGFL E E+L E
Sbjct: 389 GQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKE-EDLTE 426

>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From Drosophila Length = 527

Iteration: 1
 Score =  308 bits (789), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 168/347 (48%), Positives = 215/347 (61%), Gaps = 14/347 (4%)
Query: 3   EKS--LYSNSARNSPFTPTVPGKVPLLPQSKQGSILLPTTD-------AKCEFMNPTGSL 53
           EKS  ++   A     TP +   +   P  K  +I  P +D       AKCEF+NP GS+
Sbjct: 35  EKSPHIHRGIAHRQQITPNILEVIGCTPLVKLNNI--PASDGIECEMYAKCEFLNPGGSV 92
Query: 54  KDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXX 113
           KDR  +RM++DAE  G+LKPGYTI+EP+SGNTGIGLAM  A+KGY               
Sbjct: 93  KDRIGYRMVQDAEEQGLLKPGYTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKV 152
Query: 114 YTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAE 173
             ++ LGAKIIRT  + +YD PEG+I  A ++  +  N++VLDQ+RN  NPL+HY+ TA 
Sbjct: 153 SALRTLGAKIIRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAA 212
Query: 174 EILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPE 233
           EIL     KVDMIV+            RKIKE+ PSC++VG DP+GSILA+P  LN   +
Sbjct: 213 EILWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELN---K 269
Query: 234 NQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMH 293
             + + EVEGIGY F  T  D  V+D W K GD D F M+RRL   EGLL GGSSG AMH
Sbjct: 270 TDVQFYEVEGIGYDFPPTVFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMH 329
Query: 294 VACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEE 340
            A + A+ L+  QRCVVIL DG+RNY+TKF+SD WM  + F +   E
Sbjct: 330 AALEHARKLKKGQRCVVILPDGIRNYMTKFVSDNWMEARNFKEPVNE 376

>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From Drosophila Length = 527

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 48/89 (53%)
Query: 311 ILADGVRNYLTKFISDEWMIEKGFLDEAEELEEMIHSGTAMHVACQAAKSLRPDQRCVVI 370
           +  D V +  TK    +       L+  E L     SG AMH A + A+ L+  QRCVVI
Sbjct: 288 VFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHAALEHARKLKKGQRCVVI 347
Query: 371 LADGVRNYLTKFISDEWMIEKGFLDEAEE 399
           L DG+RNY+TKF+SD WM  + F +   E
Sbjct: 348 LPDGIRNYMTKFVSDNWMEARNFKEPVNE 376

>pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine Sulfhydrylase (oass) From Mycobacterium Tuberculosis In Complex With The Reaction Intermediate Alpha-aminoacrylate Length = 313

Iteration: 1
 Score =  172 bits (437), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 111/303 (36%), Positives = 155/303 (51%), Gaps = 16/303 (5%)
Query: 22  GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
           G+ PL+   +     +    AK EF NP  S+KDR    M++ AE AG++KP   I+EP+
Sbjct: 15  GRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKPDTIILEPT 74
Query: 82  SGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAG 141
           SGNTGI LAMV A +GY                 ++A GA++I T      D   G IA 
Sbjct: 75  SGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILT---PGADGMSGAIAK 131
Query: 142 AHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXR 201
           A  +A   +   V  QF NP NP  H  TTAEE+ RDT GKVD++V             +
Sbjct: 132 AEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTGGTITGVAQ 191
Query: 202 KIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQW 261
            IKE+ PS + V  +P  S +        +   Q   + ++GIG  F    LD++++D+ 
Sbjct: 192 VIKERKPSARFVAVEPAASPV--------LSGGQKGPHPIQGIGAGFVPPVLDQDLVDEI 243
Query: 262 GKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPD---QRCVVILADGVRN 318
              G++D   +ARRL + EGLLVG SSG A   A Q A+  RP+   +  VV+L D    
Sbjct: 244 ITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVAR--RPENAGKLIVVVLPDFGER 301
Query: 319 YLT 321
           YL+
Sbjct: 302 YLS 304

>pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine Sulfhydrylase (Oass) Holoenzyme From Mycobacterium Tuberculosis Length = 313

Iteration: 1
 Score =  170 bits (431), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 154/303 (50%), Gaps = 16/303 (5%)
Query: 22  GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
           G+ PL+   +     +    AK EF NP  S+ DR    M++ AE AG++KP   I+EP+
Sbjct: 15  GRTPLVRLRRVTDGAVADIVAKLEFFNPANSVXDRIGVAMLQAAEQAGLIKPDTIILEPT 74
Query: 82  SGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAG 141
           SGNTGI LAMV A +GY                 ++A GA++I T      D   G IA 
Sbjct: 75  SGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILT---PGADGMSGAIAK 131
Query: 142 AHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXR 201
           A  +A   +   V  QF NP NP  H  TTAEE+ RDT GKVD++V             +
Sbjct: 132 AEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTGGTITGVAQ 191
Query: 202 KIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQW 261
            IKE+ PS + V  +P  S +        +   Q   + ++GIG  F    LD++++D+ 
Sbjct: 192 VIKERKPSARFVAVEPAASPV--------LSGGQKGPHPIQGIGAGFVPPVLDQDLVDEI 243
Query: 262 GKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPD---QRCVVILADGVRN 318
              G++D   +ARRL + EGLLVG SSG A   A Q A+  RP+   +  VV+L D    
Sbjct: 244 ITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVAR--RPENAGKLIVVVLPDFGER 301
Query: 319 YLT 321
           YL+
Sbjct: 302 YLS 304

>pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine Sulfhydrylase Length = 304

Iteration: 1
 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 155/305 (50%), Gaps = 20/305 (6%)
Query: 22  GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPG--YTIVE 79
           GK P++  +K     +     K E +NP GS+KDR AW MI+DAE  G+L+PG    IVE
Sbjct: 8   GKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIVE 67
Query: 80  PSSGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMI 139
           P+SGNTGIGLAM+AA +GY                 +KA GA+++ T        PE  +
Sbjct: 68  PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTD-------PERRM 120
Query: 140 AGAHRIASQMK---NAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXX 196
             A   A ++K    A + DQF+NP N  +HYETT  E+     G++D  V         
Sbjct: 121 LAAREEALRLKEELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTI 180
Query: 197 XXXXRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRN 256
               R +KE+ P  K++  +P  S        N +   ++  +  +G+G  F    LD +
Sbjct: 181 TGVGRYLKERIPHVKVIAVEPARS--------NVLSGGKMGQHGFQGMGPGFIPENLDLS 232
Query: 257 VIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGV 316
           ++D   +  ++D F +ARRL + EGL +G SSG  +  A Q A+ L P +R   I  DG 
Sbjct: 233 LLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVARELGPGKRVACISPDGG 292
Query: 317 RNYLT 321
             YL+
Sbjct: 293 WKYLS 297

>pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc Baa-535 M Length = 314

Iteration: 1
 Score =  159 bits (403), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/286 (36%), Positives = 144/286 (50%), Gaps = 16/286 (5%)
Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXX 101
           AK E  NP GS+KDR    MI+ AE AG++KP   I+EP+SGNTGI LAMV+A +GY   
Sbjct: 36  AKLESFNPAGSIKDRIGVAMIDAAEKAGLIKPDTIILEPTSGNTGIALAMVSAARGYKCV 95
Query: 102 XXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
                         ++A GA+++ T   +      G IA A  +A       +  QF NP
Sbjct: 96  LTMPDTMSIERRMLLRAYGAELVLTPGAEGM---AGAIAKAEELAKTDDRYFIPQQFENP 152
Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGSI 221
            NP  H  TTAEE+ RDT GKVD+ V             + IK++ PS + V  +P  S 
Sbjct: 153 ANPAVHAVTTAEEVWRDTDGKVDIFVSGVGTGGTITGVAQVIKQRRPSAQFVAVEPAASP 212
Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
           +        +   Q   + ++GIG  F    LD  ++D+    G+ D   +ARR+   EG
Sbjct: 213 V--------LSGGQKGPHPIQGIGAGFVPPVLDLALVDEVITVGNDDALELARRMATEEG 264
Query: 282 LLVGGSSGTAMHVACQAAKSLRPD---QRCVVILADGVRNYLTKFI 324
           LLVG SSG A+  A + A   RP+   +  VV+L D    YL+  +
Sbjct: 265 LLVGISSGAAVWAARELAH--RPENAGKLIVVVLPDFGERYLSTVL 308

>pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium Ulcerans Agy99 Length = 314

Iteration: 1
 Score =  157 bits (398), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 102/286 (35%), Positives = 143/286 (50%), Gaps = 16/286 (5%)
Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXX 101
           AK E  NP GS+KDR    MI+ AE AG++KP   I+EP+SGNTGI LAMV+A +GY   
Sbjct: 36  AKLESFNPAGSIKDRIGVAMIDAAEKAGLIKPDTIILEPTSGNTGIALAMVSAARGYKCV 95
Query: 102 XXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
                         ++A GA+++ T   +      G IA A  +A       +  QF NP
Sbjct: 96  LTMPDTMSIERRMLLRAYGAELVLTPGAEGM---AGAIAKAEELAKTDDRYFIPQQFENP 152
Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGSI 221
            NP  H  TTAEE+ RDT GKVD+ V             + IK++ PS + V  +P  S 
Sbjct: 153 ANPAVHAVTTAEEVWRDTDGKVDIFVSGVGTGGTITGVAQVIKQRRPSAQFVAVEPAASP 212
Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
           +        +   Q   + ++GIG  F    LD  ++D+    G+ D   +ARR+   EG
Sbjct: 213 V--------LSGGQKGPHPIQGIGAGFVPPVLDLALVDEVITVGNDDALELARRMATEEG 264
Query: 282 LLVGGSSGTAMHVACQAAKSLRPD---QRCVVILADGVRNYLTKFI 324
           LL G SSG A+  A + A   RP+   +  VV+L D    YL+  +
Sbjct: 265 LLFGISSGAAVWAARELAH--RPENAGKLIVVVLPDFGERYLSTVL 308

>pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From Arabidopsis Thaliana Length = 322

Iteration: 1
 Score =  151 bits (381), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 100/289 (34%), Positives = 146/289 (50%), Gaps = 17/289 (5%)
Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTI-VEPSSGNTGIGLAMVAAIKGYXX 100
           AK E M P  S+KDR  + MI DAE  G++KPG ++ +EP+SGNTG+GLA  AA KGY  
Sbjct: 34  AKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKL 93
Query: 101 XXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRN 160
                          + A G +++ T   K     +G IA A  I ++  N  +L QF N
Sbjct: 94  IITMPASMSTERRIILLAFGVELVLTDPAKGM---KGAIAKAEEILAKTPNGYMLQQFEN 150
Query: 161 PNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGS 220
           P NP  HYETT  EI + TGGK+D  V             + +KE+  + KL G +P  S
Sbjct: 151 PANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVES 210
Query: 221 ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSE 280
            +        +   +   ++++GIG  F  + L+ ++ID+  +    ++  MAR+L   E
Sbjct: 211 AI--------LSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKE 262
Query: 281 GLLVGGSSGTAMHVACQAAKSLRPD---QRCVVILADGVRNYLTKFISD 326
           GLLVG SSG A   A + A+  RP+   +  V I       YL+  + D
Sbjct: 263 GLLVGISSGAAAAAAIKLAQ--RPENAGKLFVAIFPSFGERYLSTVLFD 309

>pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From Arabidopsis Thaliana In Complex With C-Terminal Peptide From Arabidopsis Serine Acetyltransferase Length = 320

Iteration: 1
 Score =  150 bits (380), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 100/289 (34%), Positives = 146/289 (50%), Gaps = 17/289 (5%)
Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTI-VEPSSGNTGIGLAMVAAIKGYXX 100
           AK E M P  S+KDR  + MI DAE  G++KPG ++ +EP+SGNTG+GLA  AA KGY  
Sbjct: 32  AKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKL 91
Query: 101 XXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRN 160
                          + A G +++ T   K     +G IA A  I ++  N  +L QF N
Sbjct: 92  IITMPASMSTERRIILLAFGVELVLTDPAKGM---KGAIAKAEEILAKTPNGYMLQQFEN 148
Query: 161 PNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGS 220
           P NP  HYETT  EI + TGGK+D  V             + +KE+  + KL G +P  S
Sbjct: 149 PANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVES 208
Query: 221 ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSE 280
            +        +   +   ++++GIG  F  + L+ ++ID+  +    ++  MAR+L   E
Sbjct: 209 AI--------LSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKE 260
Query: 281 GLLVGGSSGTAMHVACQAAKSLRPD---QRCVVILADGVRNYLTKFISD 326
           GLLVG SSG A   A + A+  RP+   +  V I       YL+  + D
Sbjct: 261 GLLVGISSGAAAAAAIKLAQ--RPENAGKLFVAIFPSFGERYLSTVLFD 307

>pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetylserine Sulfhydrylase K46a Mutant Length = 322

Iteration: 1
 Score =  149 bits (375), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 99/289 (34%), Positives = 145/289 (50%), Gaps = 17/289 (5%)
Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTI-VEPSSGNTGIGLAMVAAIKGYXX 100
           AK E M P  S+ DR  + MI DAE  G++KPG ++ +EP+SGNTG+GLA  AA KGY  
Sbjct: 34  AKLEMMEPCSSVADRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKL 93
Query: 101 XXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRN 160
                          + A G +++ T   K     +G IA A  I ++  N  +L QF N
Sbjct: 94  IITMPASMSTERRIILLAFGVELVLTDPAKGM---KGAIAKAEEILAKTPNGYMLQQFEN 150
Query: 161 PNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGS 220
           P NP  HYETT  EI + TGGK+D  V             + +KE+  + KL G +P  S
Sbjct: 151 PANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVES 210
Query: 221 ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSE 280
            +        +   +   ++++GIG  F  + L+ ++ID+  +    ++  MAR+L   E
Sbjct: 211 AI--------LSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKE 262
Query: 281 GLLVGGSSGTAMHVACQAAKSLRPD---QRCVVILADGVRNYLTKFISD 326
           GLLVG SSG A   A + A+  RP+   +  V I       YL+  + D
Sbjct: 263 GLLVGISSGAAAAAAIKLAQ--RPENAGKLFVAIFPSFGERYLSTVLFD 309

>pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl- Serine-(Thiol)-Lyase C Length = 430

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 98/285 (34%), Positives = 141/285 (49%), Gaps = 14/285 (4%)
Query: 22  GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTI-VEP 80
           GK P++  +      +    AK E M P  S+KDR  + M+ DAE  G + PG ++ VEP
Sbjct: 122 GKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEP 181
Query: 81  SSGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIA 140
           +SGNTGIGLA +AA +GY                 +KA GA+++ T   K      G + 
Sbjct: 182 TSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMT---GAVQ 238
Query: 141 GAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXX 200
            A  I     +A +L QF NP NP  HYETT  EI  DT GKVD+ V             
Sbjct: 239 KAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVG 298
Query: 201 RKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQ 260
           R IKEK P  +++G +P  S        + +   +   ++++GIG  F    LD+ ++D+
Sbjct: 299 RFIKEKNPKTQVIGVEPTES--------DILSGGKPGPHKIQGIGAGFIPKNLDQKIMDE 350
Query: 261 WGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPD 305
                 ++    A++L   EGL+VG SSG A   A + AK  RP+
Sbjct: 351 VIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAK--RPE 393

>pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean Length = 344

Iteration: 1
 Score =  141 bits (355), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 94/280 (33%), Positives = 136/280 (48%), Gaps = 12/280 (4%)
Query: 22  GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPG-YTIVEP 80
           G+ PL+  +K           K E M PT S+KDR A+ MI DAE   ++ PG  T++EP
Sbjct: 34  GRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIKDRPAYAMITDAEEKNLITPGKTTLIEP 93
Query: 81  SSGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIA 140
           +SGN GI +A +AA+KGY                TM+A GA++I T   K      G + 
Sbjct: 94  TSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKGMG---GTVK 150
Query: 141 GAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXX 200
            A+ +     NA +L QF NP N   H+ETT  EI  DT G+VD+ V+            
Sbjct: 151 KAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGGTVSGVG 210
Query: 201 RKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQ 260
           + +K K P+ K+ G +P  S        N +   +   + + G G  F    LD +V+++
Sbjct: 211 QYLKSKNPNVKIYGVEPSES--------NVLNGGKPGPHHITGNGVGFKPDILDLDVMEK 262
Query: 261 WGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAK 300
             +   +D   MAR L   EGL+VG SSG     A + A+
Sbjct: 263 VLEVSSEDAVNMARVLALKEGLMVGISSGANTVAALRLAQ 302

>pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a Mutant In Soybean Length = 344

Iteration: 1
 Score =  139 bits (350), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/280 (33%), Positives = 135/280 (48%), Gaps = 12/280 (4%)
Query: 22  GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPG-YTIVEP 80
           G+ PL+  +K           K E M PT S+ DR A+ MI DAE   ++ PG  T++EP
Sbjct: 34  GRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIADRPAYAMITDAEEKNLITPGKTTLIEP 93
Query: 81  SSGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIA 140
           +SGN GI +A +AA+KGY                TM+A GA++I T   K      G + 
Sbjct: 94  TSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKGMG---GTVK 150
Query: 141 GAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXX 200
            A+ +     NA +L QF NP N   H+ETT  EI  DT G+VD+ V+            
Sbjct: 151 KAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGGTVSGVG 210
Query: 201 RKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQ 260
           + +K K P+ K+ G +P  S        N +   +   + + G G  F    LD +V+++
Sbjct: 211 QYLKSKNPNVKIYGVEPSES--------NVLNGGKPGPHHITGNGVGFKPDILDLDVMEK 262
Query: 261 WGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAK 300
             +   +D   MAR L   EGL+VG SSG     A + A+
Sbjct: 263 VLEVSSEDAVNMARVLALKEGLMVGISSGANTVAALRLAQ 302

>pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium Length = 322

Iteration: 1
 Score =  137 bits (345), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 110/319 (34%), Positives = 157/319 (49%), Gaps = 20/319 (6%)
Query: 22  GKVPLLPQSK--QGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVE 79
           G  PL+  ++   G IL     AK E  NP+ S+K R    MI DAE  GVLKPG  +VE
Sbjct: 12  GHTPLVRLNRIGNGRIL-----AKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVELVE 66
Query: 80  PSSGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMI 139
           P++GNTGI LA VAA +GY                 +KALGA ++ T+  K     +G I
Sbjct: 67  PTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGM---KGAI 123
Query: 140 AGAHRI-ASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXX 198
             A  I AS  +  ++L QF NP NP  H +TT  EI  DT G+VD+ +           
Sbjct: 124 QKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGTLTG 183
Query: 199 XXRKIKEKCPSCKL--VGADPFGS-ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDR 255
             R IK       L  V  +P  S ++AQ  +  ++   +   ++++GIG  F    LD 
Sbjct: 184 VTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEI---KPGPHKIQGIGAGFIPGNLDL 240
Query: 256 NVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVA--CQAAKSLRPDQRCVVILA 313
            +ID+     +++    ARRL++ EG+L G SSG A+  A   Q  +S   ++  VVIL 
Sbjct: 241 KLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFT-NKNIVVILP 299
Query: 314 DGVRNYLTKFISDEWMIEK 332
                YL+  +  +   EK
Sbjct: 300 SSGERYLSTALFADLFTEK 318

>pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665) From Thermotoga Maritima At 1.80 A Resolution Length = 303

Iteration: 1
 Score =  137 bits (344), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/280 (35%), Positives = 139/280 (49%), Gaps = 15/280 (5%)
Query: 43  KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXXX 102
           K E  NP GS+KDR A  MI DAE  G+LK G  IVEP+SGN GI +AM+ A +G+    
Sbjct: 36  KLEKNNPGGSVKDRPALFMILDAEKRGLLKNG--IVEPTSGNMGIAIAMIGAKRGHRVIL 93
Query: 103 XXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPN 162
                        +K LGA+++ T  +      +G +  A  I S+   A +L+QF NP 
Sbjct: 94  TMPETMSVERRKVLKMLGAELVLTPGELGM---KGAVEKALEI-SRETGAHMLNQFENPY 149
Query: 163 NPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPS-CKLVGADPFGSI 221
           N  SH  TT  EIL+    ++D  V             R +K    +  K+V  +P    
Sbjct: 150 NVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEP---- 205
Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
            A+   L+     Q   + ++GIG  F    LDR+VID+     D++ + MAR L K EG
Sbjct: 206 -AKSPVLSG---GQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEG 261
Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT 321
           LLVG SSG  +  A + A+ L PD R V +  D    YL+
Sbjct: 262 LLVGISSGANVAAALKVAQKLGPDARVVTVAPDHAERYLS 301

>pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid Into Proteins As Biophysical Probe Length = 291

Iteration: 1
 Score =  137 bits (344), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/280 (35%), Positives = 139/280 (49%), Gaps = 15/280 (5%)
Query: 43  KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXXX 102
           K E  NP GS+KDR A  MI DAE  G+LK G  IVEP+SGN GI +AM+ A +G+    
Sbjct: 24  KLEKNNPGGSVKDRPALFMILDAEKRGLLKNG--IVEPTSGNMGIAIAMIGAKRGHRVIL 81
Query: 103 XXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPN 162
                        +K LGA+++ T  +      +G +  A  I S+   A +L+QF NP 
Sbjct: 82  TMPETMSVERRKVLKMLGAELVLTPGELGM---KGAVEKALEI-SRETGAHMLNQFENPY 137
Query: 163 NPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPS-CKLVGADPFGSI 221
           N  SH  TT  EIL+    ++D  V             R +K    +  K+V  +P    
Sbjct: 138 NVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEP---- 193
Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
            A+   L+     Q   + ++GIG  F    LDR+VID+     D++ + MAR L K EG
Sbjct: 194 -AKSPVLSG---GQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEG 249
Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT 321
           LLVG SSG  +  A + A+ L PD R V +  D    YL+
Sbjct: 250 LLVGISSGANVAAALKVAQKLGPDARVVTVAPDHAERYLS 289

>pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine Sulfhydrylase Complexed In External Aldimine Linkage With Methionine Length = 322

Iteration: 1
 Score =  135 bits (339), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 109/319 (34%), Positives = 156/319 (48%), Gaps = 20/319 (6%)
Query: 22  GKVPLLPQSK--QGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVE 79
           G  PL+  ++   G IL     AK E  NP+ S+  R    MI DAE  GVLKPG  +VE
Sbjct: 12  GHTPLVRLNRIGNGRIL-----AKVESRNPSFSVACRIGANMIWDAEKRGVLKPGVELVE 66
Query: 80  PSSGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMI 139
           P++GNTGI LA VAA +GY                 +KALGA ++ T+  K     +G I
Sbjct: 67  PTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGM---KGAI 123
Query: 140 AGAHRI-ASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXX 198
             A  I AS  +  ++L QF NP NP  H +TT  EI  DT G+VD+ +           
Sbjct: 124 QKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGTLTG 183
Query: 199 XXRKIKEKCPSCKL--VGADPFGS-ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDR 255
             R IK       L  V  +P  S ++AQ  +  ++   +   ++++GIG  F    LD 
Sbjct: 184 VTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEI---KPGPHKIQGIGAGFIPGNLDL 240
Query: 256 NVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVA--CQAAKSLRPDQRCVVILA 313
            +ID+     +++    ARRL++ EG+L G SSG A+  A   Q  +S   ++  VVIL 
Sbjct: 241 KLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFT-NKNIVVILP 299
Query: 314 DGVRNYLTKFISDEWMIEK 332
                YL+  +  +   EK
Sbjct: 300 SSGERYLSTALFADLFTEK 318

>pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From Geobacillus Kaustophilus Hta426 Length = 308

Iteration: 1
 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/279 (34%), Positives = 138/279 (49%), Gaps = 12/279 (4%)
Query: 43  KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXXX 102
           K EFMNP  S+KDR A  MIE AE AG LKPG TIVEP+SGNTGIGLAMVAA KGY    
Sbjct: 34  KLEFMNPGSSVKDRIALAMIEAAEKAGKLKPGDTIVEPTSGNTGIGLAMVAAAKGYKAVL 93
Query: 103 XXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPN 162
                        ++A GA+++ T   +      G IA A  +  +     +  QF+N  
Sbjct: 94  VMPDTMSLERRNLLRAYGAELVLTPGAQGM---RGAIAKAEELVRE-HGYFMPQQFKNEA 149
Query: 163 NPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGSIL 222
           NP  H  TT +EI+   G ++D  V             + ++E  P+ K+   +P  S +
Sbjct: 150 NPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGGTITGAGKVLREAYPNIKIYAVEPADSPV 209
Query: 223 AQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGL 282
                   +   +   ++++GIG  F    LD ++ D       ++ F  ARR  + EG+
Sbjct: 210 --------LSGGKPGPHKIQGIGAGFVPDILDTSIYDGVITVTTEEAFAAARRAAREEGI 261
Query: 283 LVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT 321
           L G SSG A+H A + AK L   ++ + I+      YL+
Sbjct: 262 LGGISSGAAIHAALKVAKELGKGKKVLAIIPSNGERYLS 300

>pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B Length = 303

Iteration: 1
 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/315 (32%), Positives = 146/315 (46%), Gaps = 26/315 (8%)
Query: 22  GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
           G  PL+   + G         K E  NP GS+KDRAA  MI +AE  G +KPG  ++E +
Sbjct: 9   GNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDVLIEAT 68
Query: 82  SGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAG 141
           SGNTGI LAM+AA+KGY                 M+A GA++I    ++  +       G
Sbjct: 69  SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGME-------G 121
Query: 142 AHRIASQMKN---AVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXX 198
           A  +A +M N     +LDQF NP+NP +HY TT  EI + TGG++   V           
Sbjct: 122 ARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITG 181
Query: 199 XXRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVI 258
             R ++E+     +VG         QP+  + +P   I     E +   F A+ +D  V+
Sbjct: 182 VSRFMREQSKPVTIVG--------LQPEEGSSIP--GIRRWPTEYLPGIFNASLVD-EVL 230
Query: 259 DQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRN 318
           D       +D     R L   EG+  G SSG A+  A + AK+  PD   V I+ D    
Sbjct: 231 D----IHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAKA-NPDAVVVAIICDRGDR 285
Query: 319 YLTKFISDEWMIEKG 333
           YL+  +  E    +G
Sbjct: 286 YLSTGVFGEEHFSQG 300

>pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O- Acetylserine Sulfhydrylase Length = 303

Iteration: 1
 Score =  129 bits (323), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 144/315 (45%), Gaps = 26/315 (8%)
Query: 22  GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
           G  PL+   + G         K E  NP GS+ DRAA  MI +AE  G +KPG  ++E +
Sbjct: 9   GNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGEIKPGDVLIEAT 68
Query: 82  SGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAG 141
           SGNTGI LAM+AA+KGY                 M+A GA++I    ++  +       G
Sbjct: 69  SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGME-------G 121
Query: 142 AHRIASQMKN---AVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXX 198
           A  +A +M N     +LDQF NP+NP +HY TT  EI + TGG++   V           
Sbjct: 122 ARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITG 181
Query: 199 XXRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVI 258
             R ++E+     +VG         QP+  + +P   I     E +   F A+ +D  V+
Sbjct: 182 VSRFMREQSKPVTIVG--------LQPEEGSSIP--GIRRWPTEYLPGIFNASLVD-EVL 230
Query: 259 DQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRN 318
           D       +D     R L   EG+  G SSG A+  A + A +  PD   V I+ D    
Sbjct: 231 D----IHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAAA-NPDAVVVAIICDRGDR 285
Query: 319 YLTKFISDEWMIEKG 333
           YL+  +  E    +G
Sbjct: 286 YLSTGVFGEEHFSQG 300

>pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B Length = 303

Iteration: 1
 Score =  127 bits (320), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 144/315 (45%), Gaps = 26/315 (8%)
Query: 22  GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
           G  PL+   + G         K E  NP GS+ DRAA  MI +AE  G +KPG  ++E +
Sbjct: 9   GNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGRIKPGDVLIEAT 68
Query: 82  SGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAG 141
           SGNTGI LAM+AA+KGY                 M+A GA++I    ++  +       G
Sbjct: 69  SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGME-------G 121
Query: 142 AHRIASQMKN---AVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXX 198
           A  +A +M N     +LDQF NP+NP +HY TT  EI + TGG++   V           
Sbjct: 122 ARDLALEMANRGEGKLLDQFNNPDNPKAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITG 181
Query: 199 XXRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVI 258
               ++E+     +VG         QP+  + +P   I     E +   F A+ +D  V+
Sbjct: 182 VSEFMREQSKPVTIVG--------LQPEEGSSIP--GIRRWPTEYLPGIFNASLVD-EVL 230
Query: 259 DQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRN 318
           D       +D     R L   EG+  G SSG A+  A + AK+  PD   V I+ D    
Sbjct: 231 D----IHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAKA-NPDAVVVAIICDRGDR 285
Query: 319 YLTKFISDEWMIEKG 333
           YL+  +  E    +G
Sbjct: 286 YLSTGVFGEEHFSQG 300

>pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From Salmonella Typhimurium Length = 303

Iteration: 1
 Score =  122 bits (306), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 142/315 (45%), Gaps = 26/315 (8%)
Query: 22  GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
           G  PL+   + G         K E  NP GS+KDRAA  MI +AE  G +KPG  ++E +
Sbjct: 9   GNTPLVKLQRIGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDVLIEAT 68
Query: 82  SGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAG 141
           SGNTGI LAM+AA+KGY                 M+A GA++I    ++  +       G
Sbjct: 69  SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGME-------G 121
Query: 142 AHRIA---SQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXX 198
           A  +A   S+     +LDQF NP+NP +HY TT  EI R T G++   V           
Sbjct: 122 ARDLALAMSERGEGKLLDQFNNPDNPYAHYTTTGPEIWRQTSGRITHFVSSMGTTGTITG 181
Query: 199 XXRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVI 258
             R ++E+     +VG         QP+  + +P   I     E +   F A+ +D  V+
Sbjct: 182 VSRFLREQEKPVTIVG--------LQPEEGSSIP--GIRRWPAEYMPGIFNASLVD-EVL 230
Query: 259 DQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRN 318
           D        D     R L   EG+  G SSG A+  A + A++  P    V I+ D    
Sbjct: 231 D----IHQNDAENTMRELAVREGIFCGVSSGGAVAGALRVARAT-PGAIVVAIICDRGDR 285
Query: 319 YLTKFISDEWMIEKG 333
           YL+  +  E    +G
Sbjct: 286 YLSTGVFGEEHFSQG 300

>pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex Found In The Cysteine Biosynthetic Pathway Of Mycobacterium Tuberculosis Length = 325

Iteration: 1
 Score =  112 bits (279), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 119/253 (47%), Gaps = 21/253 (8%)
Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXX 101
           AK E  NPTGS+KDR A RMIE AE  G+L+PG TI+EP+SGNTGI LAM A +KGY   
Sbjct: 41  AKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATILEPTSGNTGISLAMAARLKGYRLI 100
Query: 102 XXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
                         ++  GA+II +  +   +     +A A  +A+   + V+L Q+ NP
Sbjct: 101 CVMPENTSVERRQLLELYGAQIIFSAAEGGSNT---AVATAKELAATNPSWVMLYQYGNP 157
Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADP-FGS 220
            N  SHY  T  E+L D   ++   V             R ++E   + K+V A+P +G 
Sbjct: 158 ANTDSHYCGTGPELLADL-PEITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYGE 216
Query: 221 ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSE 280
            +   +++++                 F     D  ++      G  D     R L+ +E
Sbjct: 217 GVYALRNMDE----------------GFVPELYDPEILTARYSVGAVDAVRRTRELVHTE 260
Query: 281 GLLVGGSSGTAMH 293
           G+  G S+G  +H
Sbjct: 261 GIFAGISTGAVLH 273

>pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From Entamoeba Histolytica In Complex With Cysteine Length = 338

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 144/314 (45%), Gaps = 24/314 (7%)
Query: 4   KSLYSNSARNSPFTPTVP-GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMI 62
           K +Y N       TP V    V   P+ K+G+ +L     K E+ NP  S+KDR  + ++
Sbjct: 10  KRIYHNILETIGGTPLVELHGVTEHPRIKKGTRIL----VKLEYFNPMSSVKDRVGFNIV 65
Query: 63  EDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAK 122
             A   G LKPG  I+E +SGNTGI L    A+ GY                 MKA GA+
Sbjct: 66  YQAIKDGRLKPGMEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAE 125
Query: 123 IIRTQNDKSYDHPEGMIAGAHRIASQMK----NAVVLDQFRNPNNPLSHYETTAEEILRD 178
           +I T+  K      GM      +   +K       V +QF NP+N  +H+  TA EI  D
Sbjct: 126 LILTEGKK------GMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH-YTANEIWED 178
Query: 179 TGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISY 238
           T G+VD++V              K+KEK    K++  +P  S + + ++           
Sbjct: 179 TDGEVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGP-------- 230
Query: 239 NEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQA 298
           + ++GIG  F      +  +D+      +D + MAR ++K +G++ G SSG A+    + 
Sbjct: 231 HGIQGIGAGFIPDIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKE 290
Query: 299 AKSLRPDQRCVVIL 312
           A+    + + +VI+
Sbjct: 291 AEKPENEGKTIVII 304

>pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The Cysteine Synthase B Length = 323

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 118/253 (46%), Gaps = 21/253 (8%)
Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXX 101
           AK E  NPTGS+KDR A RMIE AE  G+L+PG TI+EP+SGNTGI LAM A +KGY   
Sbjct: 39  AKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATILEPTSGNTGISLAMAARLKGYRLI 98
Query: 102 XXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
                         ++  GA+II +  +   +     +A A  +A+   + V+L Q+ NP
Sbjct: 99  CVMPENTSVERRQLLELYGAQIIFSAAEGGSNT---AVATAKELAATNPSWVMLYQYGNP 155
Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADP-FGS 220
            N  SHY  T  E+L D   ++   V             R ++E   +  +V A+P +G 
Sbjct: 156 ANTDSHYCGTGPELLADL-PEITHFVAGLGTTGTLMGTGRFLREHVANVAIVAAEPRYGE 214
Query: 221 ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSE 280
            +   +++++                 F     D  ++      G  D     R L+ +E
Sbjct: 215 GVYALRNMDE----------------GFVPELYDPEILTARYSVGAVDAVRRTRELVHTE 258
Query: 281 GLLVGGSSGTAMH 293
           G+  G S+G  +H
Sbjct: 259 GIFAGISTGAVLH 271

>pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium Tuberculosis An O-Phosphoserine Dependent Cysteine Synthase Length = 326

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 118/253 (46%), Gaps = 21/253 (8%)
Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXX 101
           AK E  NPTGS+ DR A RMIE AE  G+L+PG TI+EP+SGNTGI LAM A +KGY   
Sbjct: 42  AKLEDRNPTGSIXDRPAVRMIEQAEADGLLRPGATILEPTSGNTGISLAMAARLKGYRLI 101
Query: 102 XXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
                         ++  GA+II +  +   +     +A A  +A+   + V+L Q+ NP
Sbjct: 102 CVMPENTSVERRQLLELYGAQIIFSAAEGGSNT---AVATAKELAATNPSWVMLYQYGNP 158
Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADP-FGS 220
            N  SHY  T  E+L D   ++   V             R ++E   + K+V A+P +G 
Sbjct: 159 ANTDSHYCGTGPELLADL-PEITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYGE 217
Query: 221 ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSE 280
            +   +++++                 F     D  ++      G  D     R L+ +E
Sbjct: 218 GVYALRNMDE----------------GFVPELYDPEILTARYSVGAVDAVRRTRELVHTE 261
Query: 281 GLLVGGSSGTAMH 293
           G+  G S+G  +H
Sbjct: 262 GIFAGISTGAVLH 274

>pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From Entamoeba Histolytica At 1.86 A Resolution Length = 343

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 144/314 (45%), Gaps = 24/314 (7%)
Query: 4   KSLYSNSARNSPFTPTVP-GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMI 62
           K +Y N       TP V    V   P+ K+G+ +L     K E+ NP  S+KDR  + ++
Sbjct: 11  KRIYHNILETIGGTPLVELHGVTEHPRIKKGTRIL----VKLEYFNPMSSVKDRVGFNIV 66
Query: 63  EDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXXXXXXXXXXXXXXYTMKALGAK 122
             A   G LKPG  I+E +SGNTGI L    A+ GY                 MKA GA+
Sbjct: 67  YQAIKDGRLKPGMEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAE 126
Query: 123 IIRTQNDKSYDHPEGMIAGAHRIASQMK----NAVVLDQFRNPNNPLSHYETTAEEILRD 178
           +I T+  K      GM      +   +K       V +QF NP+N  +H+  TA EI  D
Sbjct: 127 LILTEGKK------GMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH-YTANEIWED 179
Query: 179 TGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISY 238
           T G+VD++V              K+KEK    K++  +P  S + + ++           
Sbjct: 180 TDGEVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGP-------- 231
Query: 239 NEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQA 298
           + ++GIG  F      +  +D+      +D + MAR ++K +G++ G SSG A+    + 
Sbjct: 232 HGIQGIGAGFIPDIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKE 291
Query: 299 AKSLRPDQRCVVIL 312
           A+    + + +VI+
Sbjct: 292 AEKPENEGKTIVII 305

>pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase Length = 354

Iteration: 1
 Score =  108 bits (269), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 128/283 (45%), Gaps = 17/283 (6%)
Query: 43  KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIV-EPSSGNTGIGLAMVAAIKGYXXX 101
           K E  NP  S+KDR  + + + AE  G L PG ++V E SSGNTG+ LA + AI+GY   
Sbjct: 61  KMECENPMASVKDRLGFAIYDKAEKEGKLIPGKSVVVESSSGNTGVSLAHLGAIRGYKVI 120
Query: 102 XXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
                         ++  GA++I T         +G +  A +I +   NAV+ DQF   
Sbjct: 121 ITMPESMSLERRCLLRIFGAEVILTPAALGM---KGAVTMAKKIVTANPNAVLADQFATK 177
Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGSI 221
            N L H ETT  EI   T   VD  +             R +K+     ++V  +P  S 
Sbjct: 178 YNALIHEETTGPEIWEQTNHNVDCFIAGVGTGGTLTGVARALKKMGSHARIVAVEPMESP 237
Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
           +        +   +   ++++GIG  F    LDR++ID+       D    A +L +S+G
Sbjct: 238 V--------LSGGKPGAHKIQGIGPGFVPDVLDRSLIDEVFCVAGDDAIETALKLTRSDG 289
Query: 282 LLVGGSSGTAMHVACQAAKSLRPD---QRCVVILADGVRNYLT 321
           +  G S G  ++ A + A+  RP+   +  V I+      YL+
Sbjct: 290 VFCGFSGGANVYAALKIAE--RPEMEGKTIVTIIPSFGERYLS 330

>pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From Leishmania Donovani In Complex With Designed Tetrapeptide Length = 334

Iteration: 1
 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 121/264 (45%), Gaps = 14/264 (5%)
Query: 43  KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIV-EPSSGNTGIGLAMVAAIKGYXXX 101
           K E  NP  S+ DR  + + + AE  G L PG +IV E SSGNTG+ LA + AI+GY   
Sbjct: 40  KMECENPMASVXDRLGFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVI 99
Query: 102 XXXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
                         ++  GA++I T         +G +A A +I +   NAV+ DQF   
Sbjct: 100 ITMPESMSLERRCLLRIFGAEVILTPAALGM---KGAVAMAKKIVAANPNAVLADQFATK 156
Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIKEKCPSCKLVGADPFGSI 221
            N L H ETT  EI   T   VD  +             R +K+     ++V  +P  S 
Sbjct: 157 YNALIHEETTGPEIWEQTNHNVDCFIAGVGTGGTLTGVARALKKMGSHARIVAVEPTESP 216
Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
           +        +   +   ++++GIG  F    LDR++ID+       D    A +L +S+G
Sbjct: 217 V--------LSGGKPGPHKIQGIGPGFVPDVLDRSLIDEVLCVAGDDAIETALKLTRSDG 268
Query: 282 LLVGGSSGTAMHVACQAAKSLRPD 305
           +  G S G  ++ A + A+  RP+
Sbjct: 269 VFCGFSGGANVYAALKIAE--RPE 290

>pdb|1Y7L|A Chain A, O-Acetylserine Sulfhydrylase Complex Length = 316

Iteration: 1
 Score =  105 bits (261), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 101/284 (35%), Positives = 137/284 (48%), Gaps = 12/284 (4%)
Query: 43  KCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYXXXX 102
           K E  NP+ S+  R    M+  AE  G L  G  IV+ +SGNTGI LA VAA +GY    
Sbjct: 31  KIEGRNPSYSVXCRIGANMVWQAEKDGTLTKGKEIVDATSGNTGIALAYVAAARGYKITL 90
Query: 103 XXXXXXXXXXXYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRI-ASQMKNAVVLDQFRNP 161
                        +  LG  ++ T+  K     +G IA A  I AS     V+L QF NP
Sbjct: 91  TMPETMSLERKRLLCGLGVNLVLTEGAKGM---KGAIAKAEEIVASDPSRYVMLKQFENP 147
Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLXXXXXXXXXXXXRKIK-EKCPSCKLVGADPFGS 220
            NP  H ETT  EI +DT GKVD++V             R IK +       V  +P  S
Sbjct: 148 ANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVES 207
Query: 221 -ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFL-MARRLIK 278
            +++Q  +  +V       ++++GIG  F    LD ++ID+  +  D DT L  ARRL+ 
Sbjct: 208 PVISQTLAGEEVKPGP---HKIQGIGAGFIPKNLDLSIIDRV-ETVDSDTALATARRLMA 263
Query: 279 SEGLLVGGSSGTAMHVACQAAKSLR-PDQRCVVILADGVRNYLT 321
            EG+L G SSG A+  A + AK     D+  VVIL      YL+
Sbjct: 264 EEGILAGISSGAAVAAADRLAKLPEFADKLIVVILPSASERYLS 307

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	404
1jbq_A	435	B, cystathionine beta-synthase, serine sulfhydrase	1e-168
1jbq_A	435	B, cystathionine beta-synthase, serine sulfhydrase	1e-17
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	1e-167
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	2e-17
2q3b_A	313	Cysteine synthase A; pyridoxal-5'-phosphate, sulph	1e-102
2egu_A	308	Cysteine synthase; O-acetylserine sulfhydrase, str	1e-102
1ve1_A	304	O-acetylserine sulfhydrylase; PLP, transferase, ri	1e-100
3dwg_A	325	Cysteine synthase B; sulfur carrier protein comple	1e-100
2v03_A	303	Cysteine synthase B; pyridoxal phosphate, cysteine	1e-100
3tbh_A	334	O-acetyl serine sulfhydrylase; cysteine synthase,	1e-100
1z7w_A	322	Cysteine synthase; transferase; HET: PLP; 2.20A {A	1e-99
1y7l_A	316	O-acetylserine sulfhydrylase, O-acetylserine (thio	2e-98
4aec_A	430	Cysteine synthase, mitochondrial; lyase, cysteine	4e-98
1o58_A	303	O-acetylserine sulfhydrylase; TM0665, structural g	2e-97
2pqm_A	343	Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8	7e-97
1wkv_A	389	Cysteine synthase; homodimer, open alpha/beta fold	3e-90
2d1f_A	360	Threonine synthase; amino acid synthesis, pyridoxa	2e-20
3aey_A	351	Threonine synthase; PLP, pyridoxal phosphate, lyas	3e-20
2zsj_A	352	Threonine synthase; PLP dependent enzyme, lyase; H	7e-20
1e5x_A	486	Threonine synthase; threonine biosynthesis, PLP en	4e-18
1v71_A	323	Serine racemase, hypothetical protein C320.14 in c	7e-18
1ve5_A	311	Threonine deaminase; riken structural genomics/Pro	1e-16
3l6b_A	346	Serine racemase; pyridoxal phosphate, PLP, isomera	2e-16
1p5j_A	372	L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo	1e-15
4d9i_A	398	Diaminopropionate ammonia-lyase; fold type II PLP-	2e-14
3ss7_X	442	D-serine dehydratase; type II fold, ALFA,beta-elim	1e-13
2gn0_A	342	Threonine dehydratase catabolic; TDCB, biodegradat	2e-13
2rkb_A	318	Serine dehydratase-like; PLP bound enzyme, enzyme	9e-13
1tdj_A	514	Biosynthetic threonine deaminase; allostery, coope	2e-12
3iau_A	366	Threonine deaminase; pyridoxal phosphate, amino-ac	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
1tzj_A	338	ACC deaminase, 1-aminocyclopropane-1-carboxylate d	5e-04
1j0a_A	325	1-aminocyclopropane-1-carboxylate deaminase; PLP d	7e-04

>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* Length = 435

 Score =  477 bits (1230), Expect = e-168
 Identities = 169/302 (55%), Positives = 226/302 (74%), Gaps = 3/302 (0%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
           AKCEF N  GS+KDR + RMIEDAE  G LKPG TI+EP+SGNTGIGLA+ AA++GY+ +
Sbjct: 129 AKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCI 188

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
           +VMP KMS EKV  ++ALGA+I+RT  +  +D PE  +  A R+ +++ N+ +LDQ+RN 
Sbjct: 189 IVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNA 248

Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221
           +NPL+HY+TTA+EIL+   GK+DM+V   GTGGT +GI RK+KEKCP C+++G DP GSI
Sbjct: 249 SNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSI 308

Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
           LA+P+ LN   + + +  EVEGIGY F  T LDR V+D+W K  D++ F  AR LI  EG
Sbjct: 309 LAEPEELN---QTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEG 365

Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEEL 341
           LL GGS+G+ + VA +AA+ L+  QRCVVIL D VRNY+TKF+SD WM++KGFL E +  
Sbjct: 366 LLCGGSAGSTVAVAVKAAQELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKEEDLT 425

Query: 342 EE 343
           E+
Sbjct: 426 EK 427

>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* Length = 435

 Score = 83.2 bits (206), Expect = 1e-17
 Identities = 31/56 (55%), Positives = 43/56 (76%)

Query: 347 SGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEELEE 402
           +G+ + VA +AA+ L+  QRCVVIL D VRNY+TKF+SD WM++KGFL E +  E+
Sbjct: 372 AGSTVAVAVKAAQELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKEEDLTEK 427

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score =  479 bits (1234), Expect = e-167
 Identities = 175/299 (58%), Positives = 218/299 (72%), Gaps = 3/299 (1%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
           AKCEF+NP GS+KDR  +RM++DAE  G+LKPGYTI+EP+SGNTGIGLAM  A+KGYK +
Sbjct: 81  AKCEFLNPGGSVKDRIGYRMVQDAEEQGLLKPGYTIIEPTSGNTGIGLAMACAVKGYKCI 140

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
           +VMP KMS EKV  ++ LGAKIIRT  + +YD PEG+I  A ++  +  N++VLDQ+RN 
Sbjct: 141 IVMPEKMSNEKVSALRTLGAKIIRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNA 200

Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221
            NPL+HY+ TA EIL     KVDMIV+  GT GT SGIGRKIKE+ PSC++VG DP+GSI
Sbjct: 201 GNPLAHYDGTAAEILWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSI 260

Query: 222 LAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEG 281
           LA+P  LN   +  + + EVEGIGY F  T  D  V+D W K GD D F M+RRL   EG
Sbjct: 261 LARPAELN---KTDVQFYEVEGIGYDFPPTVFDDTVVDVWTKIGDSDCFPMSRRLNAEEG 317

Query: 282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEE 340
           LL GGSSG AMH A + A+ L+  QRCVVIL DG+RNY+TKF+SD WM  + F +   E
Sbjct: 318 LLCGGSSGGAMHAALEHARKLKKGQRCVVILPDGIRNYMTKFVSDNWMEARNFKEPVNE 376

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 29/53 (54%), Positives = 37/53 (69%)

Query: 347 SGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEE 399
           SG AMH A + A+ L+  QRCVVIL DG+RNY+TKF+SD WM  + F +   E
Sbjct: 324 SGGAMHAALEHARKLKKGQRCVVILPDGIRNYMTKFVSDNWMEARNFKEPVNE 376

>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A Length = 313

 Score =  304 bits (780), Expect = e-102
 Identities = 125/307 (40%), Positives = 174/307 (56%), Gaps = 24/307 (7%)

Query: 22  GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
           G+ PL+   +     +    AK EF NP  S+KDR    M++ AE AG++KP   I+EP+
Sbjct: 15  GRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKPDTIILEPT 74

Query: 82  SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM--- 138
           SGNTGI LAMV A +GY+ V+ MP  MS E+   ++A GA++I T         +GM   
Sbjct: 75  SGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILT------PGADGMSGA 128

Query: 139 IAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASG 198
           IA A  +A   +   V  QF NP NP  H  TTAEE+ RDT GKVD++V G GTGGT +G
Sbjct: 129 IAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTGGTITG 188

Query: 199 IGRKIKEKCPSCKLVGADPFGS-ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNV 257
           + + IKE+ PS + V  +P  S +L+  Q            + ++GIG  F    LD+++
Sbjct: 189 VAQVIKERKPSARFVAVEPAASPVLSGGQK---------GPHPIQGIGAGFVPPVLDQDL 239

Query: 258 IDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRP---DQRCVVILAD 314
           +D+    G++D   +ARRL + EGLLVG SSG A   A Q A+  RP    +  VV+L D
Sbjct: 240 VDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVAR--RPENAGKLIVVVLPD 297

Query: 315 GVRNYLT 321
               YL+
Sbjct: 298 FGERYLS 304

>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} Length = 308

 Score =  303 bits (778), Expect = e-102
 Identities = 114/284 (40%), Positives = 159/284 (55%), Gaps = 20/284 (7%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
            K EFMNP  S+KDR A  MIE AE AG LKPG TIVEP+SGNTGIGLAMVAA KGYK V
Sbjct: 33  LKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPGDTIVEPTSGNTGIGLAMVAAAKGYKAV 92

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM---IAGAHRIASQMKNAVVLDQF 158
           +VMP  MS E+   ++A GA+++ T         +GM   IA A  +  +     +  QF
Sbjct: 93  LVMPDTMSLERRNLLRAYGAELVLT------PGAQGMRGAIAKAEELVRE-HGYFMPQQF 145

Query: 159 RNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPF 218
           +N  NP  H  TT +EI+   G ++D  V G GTGGT +G G+ ++E  P+ K+   +P 
Sbjct: 146 KNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGGTITGAGKVLREAYPNIKIYAVEPA 205

Query: 219 GS-ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLI 277
            S +L+  +            ++++GIG  F    LD ++ D       ++ F  ARR  
Sbjct: 206 DSPVLSGGKP---------GPHKIQGIGAGFVPDILDTSIYDGVITVTTEEAFAAARRAA 256

Query: 278 KSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT 321
           + EG+L G SSG A+H A + AK L   ++ + I+      YL+
Sbjct: 257 REEGILGGISSGAAIHAALKVAKELGKGKKVLAIIPSNGERYLS 300

>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* Length = 304

 Score =  299 bits (769), Expect = e-100
 Identities = 114/286 (39%), Positives = 167/286 (58%), Gaps = 22/286 (7%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPG--YTIVEPSSGNTGIGLAMVAAIKGYK 99
            K E +NP GS+KDR AW MI+DAE  G+L+PG    IVEP+SGNTGIGLAM+AA +GY+
Sbjct: 28  VKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYR 87

Query: 100 MVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM---IAGAHRIASQMKNAVVLD 156
           +++ MP +MS+E+   +KA GA+++ T      D    M      A R+  +   A + D
Sbjct: 88  LILTMPAQMSEERKRVLKAFGAELVLT------DPERRMLAAREEALRLKEE-LGAFMPD 140

Query: 157 QFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGAD 216
           QF+NP N  +HYETT  E+     G++D  V G GTGGT +G+GR +KE+ P  K++  +
Sbjct: 141 QFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVE 200

Query: 217 PFGS-ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARR 275
           P  S +L+  +            +  +G+G  F    LD +++D   +  ++D F +ARR
Sbjct: 201 PARSNVLSGGKM---------GQHGFQGMGPGFIPENLDLSLLDGVIQVWEEDAFPLARR 251

Query: 276 LIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT 321
           L + EGL +G SSG  +  A Q A+ L P +R   I  DG   YL+
Sbjct: 252 LAREEGLFLGMSSGGIVWAALQVARELGPGKRVACISPDGGWKYLS 297

>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A* 3dwi_A* Length = 325

 Score =  300 bits (770), Expect = e-100
 Identities = 97/287 (33%), Positives = 137/287 (47%), Gaps = 32/287 (11%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
           AK E  NPTGS+KDR A RMIE AE  G+L+PG TI+EP+SGNTGI LAM A +KGY+++
Sbjct: 41  AKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATILEPTSGNTGISLAMAARLKGYRLI 100

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM---IAGAHRIASQMKNAVVLDQF 158
            VMP   S E+   ++  GA+II +          G    +A A  +A+   + V+L Q+
Sbjct: 101 CVMPENTSVERRQLLELYGAQIIFS------AAEGGSNTAVATAKELAATNPSWVMLYQY 154

Query: 159 RNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPF 218
            NP N  SHY  T  E+L D   ++   V G GT GT  G GR ++E   + K+V A+P 
Sbjct: 155 GNPANTDSHYCGTGPELLADL-PEITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEPR 213

Query: 219 GSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIK 278
                   +L               +   F     D  ++      G  D     R L+ 
Sbjct: 214 YG--EGVYAL-------------RNMDEGFVPELYDPEILTARYSVGAVDAVRRTRELVH 258

Query: 279 SEGLLVGGSSGTAMHVACQAAKSLRPDQRC-----VVILADGVRNYL 320
           +EG+  G S+G  +H A                   +++AD    YL
Sbjct: 259 TEGIFAGISTGAVLHAALGVGA--GALAAGERADIALVVADAGWKYL 303

>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* Length = 303

 Score =  299 bits (767), Expect = e-100
 Identities = 103/308 (33%), Positives = 152/308 (49%), Gaps = 38/308 (12%)

Query: 22  GKVPL-----LPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYT 76
           G  PL     +       +       K E  NP GS+KDRAA  MI +AE  G +KPG  
Sbjct: 9   GNTPLVKLQRMGPDNGSEVW-----LKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDV 63

Query: 77  IVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPE 136
           ++E +SGNTGI LAM+AA+KGY+M ++MP  MS+E+   M+A GA++I           +
Sbjct: 64  LIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILV------TKEQ 117

Query: 137 GM---IAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTG 193
           GM      A  +A++ +   +LDQF NP+NP +HY TT  EI + TGG++   V   GT 
Sbjct: 118 GMEGARDLALEMANRGEG-KLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTT 176

Query: 194 GTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTL 253
           GT +G+ R ++E+     +VG  P                + I    +      +     
Sbjct: 177 GTITGVSRFMREQSKPVTIVGLQPEEG-------------SSIP--GIRRWPTEYLPGIF 221

Query: 254 DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILA 313
           + +++D+      +D     R L   EG+  G SSG A+  A + A +  PD   V I+ 
Sbjct: 222 NASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAAAN-PDAVVVAIIC 280

Query: 314 D-GVRNYL 320
           D G R YL
Sbjct: 281 DRGDR-YL 287

>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A* Length = 334

 Score =  299 bits (769), Expect = e-100
 Identities = 97/288 (33%), Positives = 148/288 (51%), Gaps = 25/288 (8%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYT-IVEPSSGNTGIGLAMVAAIKGYKM 100
            K E  NP  S+KDR  + + + AE  G L PG + +VE SSGNTG+ LA + AI+GYK+
Sbjct: 39  LKMECENPMASVKDRLGFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKV 98

Query: 101 VVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM---IAGAHRIASQMKNAVVLDQ 157
           ++ MP  MS E+   ++  GA++I T          GM   +A A +I +   NAV+ DQ
Sbjct: 99  IITMPESMSLERRCLLRIFGAEVILT------PAALGMKGAVAMAKKIVAANPNAVLADQ 152

Query: 158 FRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADP 217
           F    N L H ETT  EI   T   VD  + G GTGGT +G+ R +K+     ++V  +P
Sbjct: 153 FATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTGGTLTGVARALKKMGSHARIVAVEP 212

Query: 218 FGS-ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRL 276
             S +L+  +            ++++GIG  F    LDR++ID+       D    A +L
Sbjct: 213 TESPVLSGGKP---------GPHKIQGIGPGFVPDVLDRSLIDEVLCVAGDDAIETALKL 263

Query: 277 IKSEGLLVGGSSGTAMHVACQAAKSLRP---DQRCVVILADGVRNYLT 321
            +S+G+  G S G  ++ A + A+  RP    +  V ++      YL+
Sbjct: 264 TRSDGVFCGFSGGANVYAALKIAE--RPEMEGKTIVTVIPSFGERYLS 309

>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* Length = 322

 Score =  298 bits (766), Expect = 1e-99
 Identities = 119/308 (38%), Positives = 170/308 (55%), Gaps = 25/308 (8%)

Query: 22  GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTI-VEP 80
           G  PL+  +      +    AK E M P  S+KDR  + MI DAE  G++KPG ++ +EP
Sbjct: 14  GNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEP 73

Query: 81  SSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM-- 138
           +SGNTG+GLA  AA KGYK+++ MP  MS E+   + A G +++ T      D  +GM  
Sbjct: 74  TSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLT------DPAKGMKG 127

Query: 139 -IAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTAS 197
            IA A  I ++  N  +L QF NP NP  HYETT  EI + TGGK+D  V G GTGGT +
Sbjct: 128 AIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTIT 187

Query: 198 GIGRKIKEKCPSCKLVGADPFGS-ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRN 256
           G G+ +KE+  + KL G +P  S IL+  +            ++++GIG  F  + L+ +
Sbjct: 188 GAGKYLKEQNANVKLYGVEPVESAILSGGKP---------GPHKIQGIGAGFIPSVLNVD 238

Query: 257 VIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRP---DQRCVVILA 313
           +ID+  +    ++  MAR+L   EGLLVG SSG A   A + A+  RP    +  V I  
Sbjct: 239 LIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQ--RPENAGKLFVAIFP 296

Query: 314 DGVRNYLT 321
                YL+
Sbjct: 297 SFGERYLS 304

>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* Length = 316

 Score =  295 bits (757), Expect = 2e-98
 Identities = 110/289 (38%), Positives = 152/289 (52%), Gaps = 20/289 (6%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
            K E  NP+ S+K R    M+  AE  G L  G  IV+ +SGNTGI LA VAA +GYK+ 
Sbjct: 30  VKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGKEIVDATSGNTGIALAYVAAARGYKIT 89

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM---IAGAHRIASQMKNA-VVLDQ 157
           + MP  MS E+   +  LG  ++ T      +  +GM   IA A  I +   +  V+L Q
Sbjct: 90  LTMPETMSLERKRLLCGLGVNLVLT------EGAKGMKGAIAKAEEIVASDPSRYVMLKQ 143

Query: 158 FRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIK-EKCPSCKLVGAD 216
           F NP NP  H ETT  EI +DT GKVD++V G GTGG+ +GI R IK +       V  +
Sbjct: 144 FENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVE 203

Query: 217 PFGS-ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARR 275
           P  S +++Q  +     E +   ++++GIG  F    LD ++ID+            ARR
Sbjct: 204 PVESPVISQTLA---GEEVKPGPHKIQGIGAGFIPKNLDLSIIDRVETVDSDTALATARR 260

Query: 276 LIKSEGLLVGGSSGTAMHVACQAAKSLRP---DQRCVVILADGVRNYLT 321
           L+  EG+L G SSG A+  A + AK   P   D+  VVIL      YL+
Sbjct: 261 LMAEEGILAGISSGAAVAAADRLAK--LPEFADKLIVVILPSASERYLS 307

>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} Length = 430

 Score =  298 bits (765), Expect = 4e-98
 Identities = 117/308 (37%), Positives = 169/308 (54%), Gaps = 25/308 (8%)

Query: 22  GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTI-VEP 80
           GK P++  +      +    AK E M P  S+KDR  + M+ DAE  G + PG ++ VEP
Sbjct: 122 GKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEP 181

Query: 81  SSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM-- 138
           +SGNTGIGLA +AA +GY++++ MP  MS E+   +KA GA+++ T      D  +GM  
Sbjct: 182 TSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLT------DPAKGMTG 235

Query: 139 -IAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTAS 197
            +  A  I     +A +L QF NP NP  HYETT  EI  DT GKVD+ V G GTGGT +
Sbjct: 236 AVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTIT 295

Query: 198 GIGRKIKEKCPSCKLVGADPFGS-ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRN 256
           G+GR IKEK P  +++G +P  S IL+  +            ++++GIG  F    LD+ 
Sbjct: 296 GVGRFIKEKNPKTQVIGVEPTESDILSGGKP---------GPHKIQGIGAGFIPKNLDQK 346

Query: 257 VIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRP---DQRCVVILA 313
           ++D+      ++    A++L   EGL+VG SSG A   A + AK  RP    +   V+  
Sbjct: 347 IMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAK--RPENAGKLIAVVFP 404

Query: 314 DGVRNYLT 321
                YL+
Sbjct: 405 SFGERYLS 412

>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* Length = 303

 Score =  292 bits (749), Expect = 2e-97
 Identities = 114/284 (40%), Positives = 156/284 (54%), Gaps = 23/284 (8%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
            K E  NP GS+KDR A  MI DAE  G+LK G  IVEP+SGN GI +AM+ A +G++++
Sbjct: 35  LKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG--IVEPTSGNMGIAIAMIGAKRGHRVI 92

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM---IAGAHRIASQMKNAVVLDQF 158
           + MP  MS E+   +K LGA+++ T          GM   +  A  I+ +   A +L+QF
Sbjct: 93  LTMPETMSVERRKVLKMLGAELVLT------PGELGMKGAVEKALEISRE-TGAHMLNQF 145

Query: 159 RNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKC-PSCKLVGADP 217
            NP N  SH  TT  EIL+    ++D  V G GTGGT SG+GR +K       K+V  +P
Sbjct: 146 ENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEP 205

Query: 218 FGS-ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRL 276
             S +L+  Q            + ++GIG  F    LDR+VID+     D++ + MAR L
Sbjct: 206 AKSPVLSGGQP---------GKHAIQGIGAGFVPKILDRSVIDEVITVEDEEAYEMARYL 256

Query: 277 IKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYL 320
            K EGLLVG SSG  +  A + A+ L PD R V +  D    YL
Sbjct: 257 AKKEGLLVGISSGANVAAALKVAQKLGPDARVVTVAPDHAERYL 300

>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* Length = 343

 Score =  292 bits (749), Expect = 7e-97
 Identities = 93/288 (32%), Positives = 147/288 (51%), Gaps = 26/288 (9%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
            K E+ NP  S+KDR  + ++  A   G LKPG  I+E +SGNTGI L    A+ GY++ 
Sbjct: 46  VKLEYFNPMSSVKDRVGFNIVYQAIKDGRLKPGMEIIESTSGNTGIALCQAGAVFGYRVN 105

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM---IAGAHRIASQMKNA-VVLDQ 157
           + MP  MS E+   MKA GA++I T      +  +GM   I   +++  +      V +Q
Sbjct: 106 IAMPSTMSVERQMIMKAFGAELILT------EGKKGMPGAIEEVNKMIKENPGKYFVANQ 159

Query: 158 FRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADP 217
           F NP+N  +H+  TA EI  DT G+VD++V   GT GT  G+  K+KEK    K++  +P
Sbjct: 160 FGNPDNTAAHH-YTANEIWEDTDGEVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEP 218

Query: 218 FGS-ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRL 276
             S +L                + ++GIG  F      +  +D+      +D + MAR +
Sbjct: 219 EESAVLEGKAK---------GPHGIQGIGAGFIPDIYKKEFVDEIIPIKTQDAWKMARAV 269

Query: 277 IKSEGLLVGGSSGTAMHVACQAAKSLRP---DQRCVVILADGVRNYLT 321
           +K +G++ G SSG A+    + A+  +P    +  V+I+      YL+
Sbjct: 270 VKYDGIMCGMSSGAAILAGLKEAE--KPENEGKTIVIIVPSCGERYLS 315

>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 Length = 389

 Score =  276 bits (709), Expect = 3e-90
 Identities = 56/288 (19%), Positives = 103/288 (35%), Gaps = 35/288 (12%)

Query: 42  AKCEFMNPTG-SLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKM 100
            K E+ NP   S+KDR A  +I        ++ G  + + +S N G+ L+ VA + GY+ 
Sbjct: 114 LKLEWYNPFSLSVKDRPAVEIISRLS--RRVEKGSLVADATSSNFGVALSAVARLYGYRA 171

Query: 101 VVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM---IAGAHRIASQMKNAVVLDQ 157
            V +P    +      + LGA++I                 +    + +   +  V ++Q
Sbjct: 172 RVYLPGAAEEFGKLLPRLLGAQVIVD------PEAPSTVHLLPRVMKDSKN-EGFVHVNQ 224

Query: 158 FRNPNNPLSHYETTAEEILRDTGG---KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVG 214
           F N  N  +H   TA EI   +      +  +    GT G  S     ++   PS + V 
Sbjct: 225 FYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVL 284

Query: 215 ADPFGS-ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMA 273
             P     +   +                 +           ++     +   ++     
Sbjct: 285 VQPAQGDSIPGIR----------------RVETGMLW-INMLDISYTLAEVTLEEAMEAV 327

Query: 274 RRLIKSEGLLVGGSSGTAMHVACQAAKSLR-PDQRCVVILADGVRNYL 320
             + +S+GL++G S G A+    + A          VV++ D    YL
Sbjct: 328 VEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVVVVPDTGFKYL 375

>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Length = 360

 Score = 90.8 bits (226), Expect = 2e-20
 Identities = 69/308 (22%), Positives = 109/308 (35%), Gaps = 36/308 (11%)

Query: 22  GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
           G  PL+  +        T   K E +NPTGS KDR     + DA   G       ++  S
Sbjct: 37  GGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHGQ----RAVLCAS 92

Query: 82  SGNTGIGLAMVAAIKGYKMVVVMPM-KMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIA 140
           +GNT    A  AA  G    V++P  K++  K+      GAKII+          +G   
Sbjct: 93  TGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQI---------DGNFD 143

Query: 141 GAHRIASQMKNAVVLDQFRNPNNPLSH--YETTAEEILRDTGGKVDMIVLGCGTGGTASG 198
               +A +M          N  NP+     +T A EI+   G   D+  L  G  G  + 
Sbjct: 144 DCLELARKMAADFPTISLVNSVNPVRIEGQKTAAFEIVDVLGTAPDVHALPVGNAGNITA 203

Query: 199 IGRKIKE--------KCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAA 250
             +   E        K P  +++G    G   A P  L +   +  +      IG   A+
Sbjct: 204 YWKGYTEYHQLGLIDKLP--RMLGTQAAG---AAPLVLGEPVSHPETIATAIRIGSP-AS 257

Query: 251 TTLDRNVIDQWG----KCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--LRP 304
            T       Q         D++       + + EG+ V  +S  ++    +A     +  
Sbjct: 258 WTSAVEAQQQSKGRFLAASDEEILAAYHLVARVEGVFVEPASAASIAGLLKAIDDGWVAR 317

Query: 305 DQRCVVIL 312
               V  +
Sbjct: 318 GSTVVCTV 325

>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Length = 351

 Score = 90.0 bits (224), Expect = 3e-20
 Identities = 74/320 (23%), Positives = 113/320 (35%), Gaps = 54/320 (16%)

Query: 16  FTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGY 75
            TP +P K P   + K   +       K E +NPTGS KDR     +  A   G      
Sbjct: 28  STPLIPLKGPEEARKKGIRLYA-----KYEGLNPTGSFKDRGMTLAVSKAVEGGA----Q 78

Query: 76  TIVEPSSGNTGIGLAMVAAIKGYKMVVVMPM-KMSKEKVYTMKALGAKIIRTQNDKSYDH 134
            +   S+GNT    A  AA  G   +VV+P   ++  KV      GA+I++         
Sbjct: 79  AVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQV-------- 130

Query: 135 PEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSH--YETTAEEILRDTGGKVDMIVLGCGT 192
            EG    A R+  ++  A  +    N  NP      +T A E++ + G       L  G 
Sbjct: 131 -EGNFDDALRLTQKLTEAFPV-ALVNSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGN 188

Query: 193 GGTASGIGRKIKE--------KCPSCKLVGADPFGSILAQPQSLNDVPENQ------ISY 238
            G  +      K         + P  +++G    G   A P  L    E        I  
Sbjct: 189 AGNITAHWMGYKAYHALGKAKRLP--RMLGFQAAG---AAPLVLGRPVERPETLATAIR- 242

Query: 239 NEVEGIGYSFAATTLDRNVIDQWG----KCGDKDTFLMARRLIKSEGLLVGGSSGTAMHV 294
                IG   A+        ++ G       D++     R L + EG+    +S  AM  
Sbjct: 243 -----IGNP-ASWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAG 296

Query: 295 ACQAAKS--LRPDQRCVVIL 312
             +  +   L P+   V+ L
Sbjct: 297 VFKLLREGRLEPESTVVLTL 316

>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Length = 352

 Score = 89.3 bits (222), Expect = 7e-20
 Identities = 60/313 (19%), Positives = 102/313 (32%), Gaps = 45/313 (14%)

Query: 22  GKVPLLPQSKQGSILLPTTD--AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVE 79
           G  PL+        +        K E +NPTGS KDR     I  A  AG       ++ 
Sbjct: 29  GNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVEAGK----RAVIC 84

Query: 80  PSSGNTGIGLAMVAAIKGYKMVVVMPM-KMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM 138
            S+GNT    A  AA  G +  V++P   ++  K+      GAK++           +G 
Sbjct: 85  ASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAI---------QGT 135

Query: 139 IAGAHRIASQMKNAVVLDQFRNPNNPLSH--YETTAEEILRDTGGKVDMIVLGCGTGGTA 196
              A  I  ++     ++   N  NP      +T A EI    G   D   +  G  G  
Sbjct: 136 FDDALNIVRKIGENFPVE-IVNSVNPYRIEGQKTAAFEICDTLGEAPDYHFIPVGNAGNI 194

Query: 197 SGIGRKIKE--------KCPSCKLVGADPFGS---ILAQPQSLNDVPENQISYNEVEGIG 245
           +   +  K         K P  +++G    G+   +   P          I       IG
Sbjct: 195 TAYWKGFKIYYEEGKITKLP--RMMGWQAEGAAPIVKGYPIKNPQTIATAIK------IG 246

Query: 246 YSFAATTLDRNVIDQWG----KCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS 301
               +         + G       D +     + +  +EG+    +S  ++    +  + 
Sbjct: 247 NP-YSWKSALKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPASAASVAGLIKLVRE 305

Query: 302 --LRPDQRCVVIL 312
              +  +     L
Sbjct: 306 GFFKGGEVVTCTL 318

>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Length = 486

 Score = 84.8 bits (210), Expect = 4e-18
 Identities = 54/321 (16%), Positives = 107/321 (33%), Gaps = 48/321 (14%)

Query: 22  GKVPLLPQSKQGSILLPTTD--AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGY-TIV 78
           G   L    + G   L   D   K   ++ TGS KD     ++        +K     + 
Sbjct: 129 GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVG 188

Query: 79  EPSSGNTGIGLAMVAAIKGYKMVVVMP-MKMSKEKVYTMKALGAKIIRTQNDKSYDHPEG 137
             S+G+T   L+   A  G   +V +P  K+S  ++    A GA ++           + 
Sbjct: 189 CASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSI---------DT 239

Query: 138 MIAGAHRIASQMKNAVVLDQFRNPNNPLSH--YETTAEEILRDTGGKV-DMIVLGCGTGG 194
              G  ++  ++   + +    N  N L     +T A EIL+    +V D +++  G  G
Sbjct: 240 DFDGCMKLIREITAELPIY-LANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLG 298

Query: 195 TASGIGR--------KIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEG--- 243
                 +         + ++ P  ++V A       A P            +  +     
Sbjct: 299 NIYAFYKGFKXCQELGLVDRIP--RMVCAQAAN---ANPLY-LHYKSGWKDFKPMTASTT 352

Query: 244 ------IGYSFAATTLDRNVIDQWG----KCGDKDTFLMARRLIKSEGLLVGGSSGTAMH 293
                 IG    +       + +      +  +++  + A     S G+ +   +G A+ 
Sbjct: 353 FASAIQIGDP-VSIDRAVYALKKCNGIVEEATEEEL-MDAMAQADSTGMFICPHTGVALT 410

Query: 294 VACQAAKS--LRPDQRCVVIL 312
              +      + P  R VV+ 
Sbjct: 411 ALFKLRNQGVIAPTDRTVVVS 431

>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Length = 323

 Score = 82.9 bits (206), Expect = 7e-18
 Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 31/187 (16%)

Query: 43  KCEFMNPTGSLKDRAAW----RMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
           KCE     G+ K R A     ++ E    AGV       +  SSGN    +A+ A I G 
Sbjct: 46  KCENFQKMGAFKFRGALNALSQLNEAQRKAGV-------LTFSSGNHAQAIALSAKILGI 98

Query: 99  KMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQF 158
              ++MP+   + KV   K  G ++I    D+  D  E     A  I+ + +        
Sbjct: 99  PAKIIMPLDAPEAKVAATKGYGGQVIMY--DRYKDDRE---KMAKEISER-EGLT----I 148

Query: 159 RNPNNPLSHYE------TTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKL 212
             P +   H        T A+E+  + G  +D + +  G GG  SG     +   P+C++
Sbjct: 149 IPPYD---HPHVLAGQGTAAKELFEEVGP-LDALFVCLGGGGLLSGSALAARHFAPNCEV 204

Query: 213 VGADPFG 219
            G +P  
Sbjct: 205 YGVEPEA 211

>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Length = 311

 Score = 78.7 bits (195), Expect = 1e-16
 Identities = 42/188 (22%), Positives = 71/188 (37%), Gaps = 30/188 (15%)

Query: 43  KCEFMNPTGSLKDRAAW-RMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
           K E +  TGS K R A  + +      G+       +  SSGN   G+A  A + G K +
Sbjct: 40  KAEHLQKTGSFKARGALSKALALENPKGL-------LAVSSGNHAQGVAYAAQVLGVKAL 92

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
           VVMP   S  K    +A GA+++      +  + E     A  +  +           +P
Sbjct: 93  VVMPEDASPYKKACARAYGAEVVDR--GVTAKNRE---EVARALQEE-TGYA----LIHP 142

Query: 162 NNPLSHYE------TTAEEILRDT---GGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKL 212
            +            T   E+L      G     ++   G GG  +G+   +K   P+  +
Sbjct: 143 FD---DPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLV 199

Query: 213 VGADPFGS 220
           +G +P  +
Sbjct: 200 LGVEPEAA 207

>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A* Length = 346

 Score = 78.8 bits (195), Expect = 2e-16
 Identities = 52/190 (27%), Positives = 74/190 (38%), Gaps = 34/190 (17%)

Query: 43  KCEFMNPTGSLKDRAAW----RMIEDAE---TAGVLKPGYTIVEPSSGNTGIGLAMVAAI 95
           KCE    TGS K R A      ++ DA       V       V  SSGN G  L   A +
Sbjct: 45  KCELFQKTGSFKIRGALNAVRSLVPDALERKPKAV-------VTHSSGNHGQALTYAAKL 97

Query: 96  KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVL 155
           +G    +V+P      K   ++A GA I+    + S +  E     A R+  +    +  
Sbjct: 98  EGIPAYIVVPQTAPDCKKLAIQAYGASIVYC--EPSDESRE---NVAKRVTEE-TEGI-- 149

Query: 156 DQFRNPNNPLSHYE------TTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPS 209
               +PN             T A E+L      VD +V+  G GG  +GI   +K   PS
Sbjct: 150 --MVHPNQ---EPAVIAGQGTIALEVLNQVPL-VDALVVPVGGGGMLAGIAITVKALKPS 203

Query: 210 CKLVGADPFG 219
            K+  A+P  
Sbjct: 204 VKVYAAEPSN 213

>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Length = 372

 Score = 76.5 bits (189), Expect = 1e-15
 Identities = 36/190 (18%), Positives = 62/190 (32%), Gaps = 33/190 (17%)

Query: 43  KCEFMNPTGSLKDRAAWRMIE---DAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYK 99
           K +   P+GS K R      +       A         V  S+GN G+  A  A   G  
Sbjct: 66  KMDSAQPSGSFKIRGIGHFCKRWAKQGCAHF-------VCSSAGNAGMAAAYAARQLGVP 118

Query: 100 MVVVMPMKMSKEKVYTMKALGAKIIRTQN--DKSYDHPEGMIAGAHRIASQMKNAVVLDQ 157
             +V+P       +  +K  GA         D++++        A  +A      V +  
Sbjct: 119 ATIVVPGTTPALTIERLKNEGATCKVVGELLDEAFEL-------AKALAKNNPGWVYI-- 169

Query: 158 FRNPNNPLSHYE------TTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKE-KCPSC 210
                 P           +  +E+      K   I L  G GG   G+ + ++E      
Sbjct: 170 -----PPFDDPLIWEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDV 224

Query: 211 KLVGADPFGS 220
            ++  + FG+
Sbjct: 225 PVIAMETFGA 234

>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Length = 398

 Score = 72.9 bits (179), Expect = 2e-14
 Identities = 36/168 (21%), Positives = 60/168 (35%), Gaps = 17/168 (10%)

Query: 64  DAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKI 123
                  +    T    + GN G G+A  A   G   V+ MP   ++E+V  +  LGA+ 
Sbjct: 102 FEHLKNAIGEKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAEC 161

Query: 124 IRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSH------YETTAEEI-- 175
           I T  D +YD          + A Q     V+                  Y T A+E   
Sbjct: 162 IVT--DMNYDDTV---RLTMQHA-QQHGWEVVQDTAWEGYTKIPTWIMQGYATLADEAVE 215

Query: 176 -LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKC--PSCKLVGADPFGS 220
            +R+ G     ++L  G G  A G+   + +     +   +  +P  +
Sbjct: 216 QMREMGVTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKA 263

>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Length = 442

 Score = 71.0 bits (174), Expect = 1e-13
 Identities = 45/263 (17%), Positives = 86/263 (32%), Gaps = 28/263 (10%)

Query: 50  TGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS 109
            G L     +  +   E        Y+I   S+GN G+ + +++A  G+K+ V M     
Sbjct: 137 AGLLTLDDDYSKLLSPEFKQFFS-QYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADAR 195

Query: 110 KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYE 169
             K   +++ G  ++  + D  Y      +    + A    N   +D   N       Y 
Sbjct: 196 AWKKAKLRSHGVTVVEYEQD--YGVA---VEEGRKAAQSDPNCFFIDDE-NSRTLFLGYS 249

Query: 170 TTAEEILR--------DTGGKVDMIVLGCGTGGTASGIGRKIKEKC-PSCKLVGADPFGS 220
              + +                  + L CG GG   G+   +K           A+P  S
Sbjct: 250 VAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHS 309

Query: 221 ILAQPQSLNDVPENQISYNEVEGIGYSFAA---------TTLD--RNVIDQWGKCGDKDT 269
                  ++    +QIS  ++     + A                  ++D +    D+  
Sbjct: 310 P-CMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGFYTLSDQTM 368

Query: 270 FLMARRLIKSEGLLVGGSSGTAM 292
           + M   L + EG+ +  S+   M
Sbjct: 369 YDMLGWLAQEEGIRLEPSALAGM 391

>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Length = 318

 Score = 67.6 bits (166), Expect = 9e-13
 Identities = 37/190 (19%), Positives = 63/190 (33%), Gaps = 34/190 (17%)

Query: 43  KCEFMNPTGSLKDRAAWRMIE---DAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYK 99
           KCE + P+GS K R      +         +       V  S GN GI  A  A   G  
Sbjct: 27  KCENVQPSGSFKIRGIGHFCQEMAKKGCRHL-------VCSSGGNAGIAAAYAARKLGIP 79

Query: 100 MVVVMPMKMSKEKVYTMKALGAKIIRTQN--DKSYDHPEGMIAGAHRIASQMKNAVVLDQ 157
             +V+P   S + V  ++  GA++  T    D++          A  +A +     V   
Sbjct: 80  ATIVLPESTSLQVVQRLQGEGAEVQLTGKVWDEANLR-------AQELAKRDGWENV--- 129

Query: 158 FRNPNNPLSHYE------TTAEEILRDTGGKVDMIVLGC-GTGGTASGIGRKIKEKCPSC 210
                 P  H        +  +E+          +VL   G G  A  +   ++      
Sbjct: 130 -----PPFDHPLIWKGHASLVQELKAVLRTPPGALVLAVGGGGLLAGVVAGLLEVGWQHV 184

Query: 211 KLVGADPFGS 220
            ++  +  G+
Sbjct: 185 PIIAMETHGA 194

>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Length = 514

 Score = 67.6 bits (166), Expect = 2e-12
 Identities = 45/190 (23%), Positives = 79/190 (41%), Gaps = 35/190 (18%)

Query: 43  KCEFMNPTGSLKDRAAWRMI----EDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
           K E   P  S K R A+ M+    E+ +  GV       +  S+GN   G+A  +A  G 
Sbjct: 51  KREDRQPVHSFKLRGAYAMMAGLTEEQKAHGV-------ITASAGNHAQGVAFSSARLGV 103

Query: 99  KMVVVMPMKMSKEKVYTMKALGAKIIRTQN--DKSYDHPEGMIAGAHRIASQMKNAVVLD 156
           K ++VMP   +  KV  ++  G +++      D++          A  ++ Q +    + 
Sbjct: 104 KALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAK-------AIELSQQ-QGFTWVP 155

Query: 157 QFRNPNNPLSHYE------TTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSC 210
            F +P              T A E+L+     +D + +  G GG A+G+   IK+  P  
Sbjct: 156 PFDHP-------MVIAGQGTLALELLQQDA-HLDRVFVPVGGGGLAAGVAVLIKQLMPQI 207

Query: 211 KLVGADPFGS 220
           K++  +   S
Sbjct: 208 KVIAVEAEDS 217

>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Length = 366

 Score = 63.4 bits (155), Expect = 3e-11
 Identities = 40/190 (21%), Positives = 73/190 (38%), Gaps = 35/190 (18%)

Query: 43  KCEFMNPTGSLKDRAAWRMI----EDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
           K E      S K R A+ M+     +    GV       +  S+GN   G+A+       
Sbjct: 80  KREDKQRVFSFKLRGAYNMMSNLSREELDKGV-------ITASAGNHAQGVALAGQRLNC 132

Query: 99  KMVVVMPMKMSKEKVYTMKALGAKIIRTQN--DKSYDHPEGMIAGAHRIASQMKNAVVLD 156
              +VMP    + K+  ++ALG  ++      D++  H       A  ++ +      + 
Sbjct: 133 VAKIVMPTTTPQIKIDAVRALGGDVVLYGKTFDEAQTH-------ALELSEK-DGLKYIP 184

Query: 157 QFRNPNNPLSHYE------TTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSC 210
            F +P              T   EI R     +  + +  G GG  +G+    K+  P+ 
Sbjct: 185 PFDDP-------GVIKGQGTIGTEINRQLK-DIHAVFIPVGGGGLIAGVATFFKQIAPNT 236

Query: 211 KLVGADPFGS 220
           K++G +P+G+
Sbjct: 237 KIIGVEPYGA 246

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 30/228 (13%), Positives = 61/228 (26%), Gaps = 74/228 (32%)

Query: 221 ILAQPQSLNDV----------PENQISY--NEVEGIGYSFAATTLDRNVIDQWGKCGDKD 268
           I+    +++             E  +     EV  I Y F  + +               
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ---PSMMTR 110

Query: 269 TFLMARRLIKSEGLLVGGSSGTAMHVA--------CQAAKSLRPDQRCVV---------I 311
            ++  R     + L          +V+         QA   LRP +  ++          
Sbjct: 111 MYIEQR-----DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165

Query: 312 LA-DGVRNY-LTKFISDE--WMIEKGFLDEAEELEEMI----------------HSGTAM 351
           +A D   +Y +   +  +  W +     +  E + EM+                HS    
Sbjct: 166 VALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 352 HVACQAAKSLR------PDQRCVVILADGVRNYLTKFISDEWMIEKGF 393
                    LR      P + C+++L +         + +       F
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLN---------VQNAKAWNA-F 262

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 8e-04
 Identities = 52/360 (14%), Positives = 105/360 (29%), Gaps = 125/360 (34%)

Query: 71  LKPG-YTIVEPSSGNTGIG---LAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT 126
           L+P    +++   G  G G   +A +     YK+   M  K     ++ +  L       
Sbjct: 147 LRPAKNVLID---GVLGSGKTWVA-LDVCLSYKVQCKMDFK-----IFWLN-LK------ 190

Query: 127 QNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMI 186
               + + PE ++    ++  Q+          + N  L  +    +  LR         
Sbjct: 191 ----NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS--IQAELR--------- 235

Query: 187 VLGCGTGGTASGIGRKIKEKC-PSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIG 245
                         R +K K   +C LV              L +V   +          
Sbjct: 236 --------------RLLKSKPYENCLLV--------------LLNVQNAKA----WN--- 260

Query: 246 YSFA------ATTLDRNVIDQWGKCGDKDTFLMARRLI----KSEGLLVGGSSGTAMHVA 295
            +F        TT  + V D           L    +     + + LL         ++ 
Sbjct: 261 -AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-------LKYLD 312

Query: 296 CQAAKSLRPDQRC------VVILADGVRNYLTKFISDEWMIEKGFLDEAEELEEMIHSGT 349
           C+  + L P +        + I+A+ +R+ L  +  D W          ++L  +I S  
Sbjct: 313 CR-PQDL-PREVLTTNPRRLSIIAESIRDGLATW--DNWK-----HVNCDKLTTIIES-- 361

Query: 350 AMHVACQAAKSLRPD--QRC---VVILADGVRNYLTKFISDEWMIEKGFLDEAEELEEMI 404
                  +   L P   ++    + +      +  T  +S  W       D  +    ++
Sbjct: 362 -------SLNVLEPAEYRKMFDRLSVFPPSA-HIPTILLSLIW------FDVIKSDVMVV 407

>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Length = 338

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 26/140 (18%), Positives = 46/140 (32%), Gaps = 12/140 (8%)

Query: 89  LAMVAAIKGYKMVVVMP-MKMSKEKVYT-------MKALGAKIIRTQNDKSYDHPEGMIA 140
           +A VAA  G K V+V        + VY         + LGA +    +            
Sbjct: 84  VAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDGFDIGFRRSWED 143

Query: 141 GAHRIASQMKNAVVL-DQFRNPNNPLSHYETTAEE---ILRDTGGKVDMIVLGCGTGGTA 196
               + +       +     +       +   AEE      + G K D +V+   TG T 
Sbjct: 144 ALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQ 203

Query: 197 SGIGRKIKEKCPSCKLVGAD 216
           +G+         + +++G D
Sbjct: 204 AGMVVGFAADGRADRVIGVD 223

>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* Length = 325

 Score = 40.4 bits (94), Expect = 7e-04
 Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 1/139 (0%)

Query: 83  GNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTM-KALGAKIIRTQNDKSYDHPEGMIAG 141
            N      + A   G   ++V+  K   +  Y + K +G +        S++  +     
Sbjct: 81  SNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMKYAEEI 140

Query: 142 AHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGR 201
           A  +  + +   V+            Y     EI   +  K D IV+  G+GGT +G+  
Sbjct: 141 AEELKREGRKPYVIPPGGASPIGTLGYVRAVGEIATQSEVKFDSIVVAAGSGGTLAGLSL 200

Query: 202 KIKEKCPSCKLVGADPFGS 220
            +       + VG      
Sbjct: 201 GLSILNEDIRPVGIAVGRF 219

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	404
3vc3_A	344	Beta-cyanoalnine synthase; beta-cyanoalanine synth	100.0
1jbq_A	435	B, cystathionine beta-synthase, serine sulfhydrase	100.0
3tbh_A	334	O-acetyl serine sulfhydrylase; cysteine synthase,	100.0
2v03_A	303	Cysteine synthase B; pyridoxal phosphate, cysteine	100.0
4aec_A	430	Cysteine synthase, mitochondrial; lyase, cysteine	100.0
2q3b_A	313	Cysteine synthase A; pyridoxal-5'-phosphate, sulph	100.0
1y7l_A	316	O-acetylserine sulfhydrylase, O-acetylserine (thio	100.0
1z7w_A	322	Cysteine synthase; transferase; HET: PLP; 2.20A {A	100.0
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	100.0
3dwg_A	325	Cysteine synthase B; sulfur carrier protein comple	100.0
2pqm_A	343	Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8	100.0
2egu_A	308	Cysteine synthase; O-acetylserine sulfhydrase, str	100.0
1ve1_A	304	O-acetylserine sulfhydrylase; PLP, transferase, ri	100.0
1o58_A	303	O-acetylserine sulfhydrylase; TM0665, structural g	100.0
2d1f_A	360	Threonine synthase; amino acid synthesis, pyridoxa	100.0
3aey_A	351	Threonine synthase; PLP, pyridoxal phosphate, lyas	100.0
1p5j_A	372	L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo	100.0
2zsj_A	352	Threonine synthase; PLP dependent enzyme, lyase; H	100.0
4h27_A	364	L-serine dehydratase/L-threonine deaminase; PLP de	100.0
3l6b_A	346	Serine racemase; pyridoxal phosphate, PLP, isomera	100.0
2gn0_A	342	Threonine dehydratase catabolic; TDCB, biodegradat	100.0
1ve5_A	311	Threonine deaminase; riken structural genomics/Pro	100.0
1v71_A	323	Serine racemase, hypothetical protein C320.14 in c	100.0
2rkb_A	318	Serine dehydratase-like; PLP bound enzyme, enzyme	100.0
4d9b_A	342	D-cysteine desulfhydrase; fold type II PLP-depende	100.0
1f2d_A	341	1-aminocyclopropane-1-carboxylate deaminase; carbo	100.0
1j0a_A	325	1-aminocyclopropane-1-carboxylate deaminase; PLP d	100.0
1tdj_A	514	Biosynthetic threonine deaminase; allostery, coope	100.0
3ss7_X	442	D-serine dehydratase; type II fold, ALFA,beta-elim	100.0
3iau_A	366	Threonine deaminase; pyridoxal phosphate, amino-ac	100.0
1wkv_A	389	Cysteine synthase; homodimer, open alpha/beta fold	100.0
1tzj_A	338	ACC deaminase, 1-aminocyclopropane-1-carboxylate d	100.0
4d9i_A	398	Diaminopropionate ammonia-lyase; fold type II PLP-	100.0
1e5x_A	486	Threonine synthase; threonine biosynthesis, PLP en	100.0
1v8z_A	388	Tryptophan synthase beta chain 1; beta+alpha, rike	100.0
1qop_B	396	Tryptophan synthase beta chain; lyase, carbon-oxyg	100.0
1x1q_A	418	Tryptophan synthase beta chain; structural genomic	100.0
2o2e_A	422	Tryptophan synthase beta chain; amino-acid biosynt	100.0
1vb3_A	428	Threonine synthase; PLP-dependent enzyme, lyase; H	100.0
1kl7_A	514	Threonine synthase; threonine synthesis, pyridoxal	100.0
4f4f_A	468	Threonine synthase; structural genomics, niaid, na	100.0
3v7n_A	487	Threonine synthase; ssgcid, structural genomics, s	100.0
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.87
2v03_A	303	Cysteine synthase B; pyridoxal phosphate, cysteine	99.86
4aec_A	430	Cysteine synthase, mitochondrial; lyase, cysteine	99.85
3tbh_A	334	O-acetyl serine sulfhydrylase; cysteine synthase,	99.84
2q3b_A	313	Cysteine synthase A; pyridoxal-5'-phosphate, sulph	99.84
2pqm_A	343	Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8	99.82
1z7w_A	322	Cysteine synthase; transferase; HET: PLP; 2.20A {A	99.82
3dwg_A	325	Cysteine synthase B; sulfur carrier protein comple	99.82
1y7l_A	316	O-acetylserine sulfhydrylase, O-acetylserine (thio	99.81
1ve1_A	304	O-acetylserine sulfhydrylase; PLP, transferase, ri	99.79
2egu_A	308	Cysteine synthase; O-acetylserine sulfhydrase, str	99.76
1o58_A	303	O-acetylserine sulfhydrylase; TM0665, structural g	99.71
1wkv_A	389	Cysteine synthase; homodimer, open alpha/beta fold	99.68
3l6b_A	346	Serine racemase; pyridoxal phosphate, PLP, isomera	99.65
3aey_A	351	Threonine synthase; PLP, pyridoxal phosphate, lyas	99.65
1p5j_A	372	L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo	99.64
2d1f_A	360	Threonine synthase; amino acid synthesis, pyridoxa	99.64
2zsj_A	352	Threonine synthase; PLP dependent enzyme, lyase; H	99.62
1ve5_A	311	Threonine deaminase; riken structural genomics/Pro	99.62
1v71_A	323	Serine racemase, hypothetical protein C320.14 in c	99.6
2rkb_A	318	Serine dehydratase-like; PLP bound enzyme, enzyme	99.59
2gn0_A	342	Threonine dehydratase catabolic; TDCB, biodegradat	99.59
1j0a_A	325	1-aminocyclopropane-1-carboxylate deaminase; PLP d	99.57
1v8z_A	388	Tryptophan synthase beta chain 1; beta+alpha, rike	99.55
1tdj_A	514	Biosynthetic threonine deaminase; allostery, coope	99.53
1f2d_A	341	1-aminocyclopropane-1-carboxylate deaminase; carbo	99.5
1tzj_A	338	ACC deaminase, 1-aminocyclopropane-1-carboxylate d	99.5
4h27_A	364	L-serine dehydratase/L-threonine deaminase; PLP de	99.49
4d9b_A	342	D-cysteine desulfhydrase; fold type II PLP-depende	99.48
3iau_A	366	Threonine deaminase; pyridoxal phosphate, amino-ac	99.48
1qop_B	396	Tryptophan synthase beta chain; lyase, carbon-oxyg	99.43
1x1q_A	418	Tryptophan synthase beta chain; structural genomic	99.43
4d9i_A	398	Diaminopropionate ammonia-lyase; fold type II PLP-	99.4
1e5x_A	486	Threonine synthase; threonine biosynthesis, PLP en	99.37
3vc3_A	344	Beta-cyanoalnine synthase; beta-cyanoalanine synth	99.35
2o2e_A	422	Tryptophan synthase beta chain; amino-acid biosynt	99.35
1vb3_A	428	Threonine synthase; PLP-dependent enzyme, lyase; H	99.3
3ss7_X	442	D-serine dehydratase; type II fold, ALFA,beta-elim	99.28
1jbq_A	435	B, cystathionine beta-synthase, serine sulfhydrase	99.17
1kl7_A	514	Threonine synthase; threonine synthesis, pyridoxal	98.95
4f4f_A	468	Threonine synthase; structural genomics, niaid, na	98.65
3v7n_A	487	Threonine synthase; ssgcid, structural genomics, s	98.39
1vp8_A	201	Hypothetical protein AF0103; putative pyruvate kin	93.7
1t57_A	206	Conserved protein MTH1675; structural genomics, FM	88.83
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	88.33
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	86.98
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	86.26
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	85.93
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	85.48
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	85.43
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	85.37
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	85.06
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	84.82
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	84.62
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	84.5
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	83.65
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	83.6
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	83.36
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	82.43
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	82.34
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	81.68
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	81.5
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	81.22
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	81.2
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	80.88
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	80.87
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	80.83
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	80.13

>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*

Probab=100.00  E-value=1.8e-61  Score=465.11  Aligned_cols=316  Identities=35%  Similarity=0.509  Sum_probs=267.9

Q ss_pred             CCCCCCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCC-CEEEecCCChHHHHH
Q psy14801         11 ARNSPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPG-YTIVEPSSGNTGIGL   89 (404)
Q Consensus        11 ~~~~~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~ssGN~g~a~   89 (404)
                      .+.+..|..++|+|||+++++|++.+|++||+|+|++|||||||||++.+++.++.++|.++|| .+||++|+||||+|+
T Consensus        23 ~~i~~~i~~lIG~TPLv~~~~Ls~~~G~~IylK~E~lnptGSfK~RgA~~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~al  102 (344)
T 3vc3_A           23 TNIKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIADRPAYAMITDAEEKNLITPGKTTLIEPTSGNMGISM  102 (344)
T ss_dssp             CSCBSSGGGGSCCCCEEECCSTTTTCCSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCCTTTCEEEEECSSHHHHHH
T ss_pred             hhhhccHhhhcCCCceEECcccchhhCCEEEEEecCCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCEEEEeCCcHHHHHH
Confidence            3455677788999999999999999999999999999999999999999999999999998887 489999999999999


Q ss_pred             HHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHh
Q psy14801         90 AMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYE  169 (404)
Q Consensus        90 A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~  169 (404)
                      |++|+++|++|+||||++++..|+++++.|||+|++++...+   .......+.++..+.++.++.++|.||.+.+.|+.
T Consensus       103 A~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~np~~~~a~~~  179 (344)
T 3vc3_A          103 AFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKG---MGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFE  179 (344)
T ss_dssp             HHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGH---HHHHHHHHHHHHHHSTTEECCCTTTCHHHHHHHHH
T ss_pred             HHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCCCc---chHHHHHHHHHHhhccCceeccccccchhHHHHHH
Confidence            999999999999999999999999999999999999986321   22233445555556667888999999988889999


Q ss_pred             hHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCccc
Q psy14801        170 TTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFA  249 (404)
Q Consensus       170 ~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  249 (404)
                      ++++||++|+..+||.+|+++|+||+++|++.+++...|++++|+|+|.+++.+....        ...+.+.+++..+.
T Consensus       180 t~g~EI~eq~~~~~d~vv~~vGgGG~~~Gi~~~~k~~~p~v~vigVep~~s~~l~~~~--------~~~~~i~g~g~~~~  251 (344)
T 3vc3_A          180 TTGPEIWEDTNGQVDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGK--------PGPHHITGNGVGFK  251 (344)
T ss_dssp             THHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCGGGTCC--------CCCCSCTTSCCSSC
T ss_pred             HHHHHHHHHhCCCceEEEEecCCccchHHHhhhhHhhCCCceEEEEcCCCChhhcCCC--------CCCeeEeccccccc
Confidence            9999999999888999999999999999999999999999999999999986553321        12234455666666


Q ss_pred             ccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCccccccchhHH
Q psy14801        250 ATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWM  329 (404)
Q Consensus       250 ~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~~~~~~~~  329 (404)
                      +...+....|.++.++|.|++.+++.+++++|+++++                                           
T Consensus       252 ~~~~~~~~~d~~v~v~d~eai~a~~~L~~~eGi~v~~-------------------------------------------  288 (344)
T 3vc3_A          252 PDILDLDVMEKVLEVSSEDAVNMARVLALKEGLMVGI-------------------------------------------  288 (344)
T ss_dssp             CTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCH-------------------------------------------
T ss_pred             CcccchhhceEEEEECHHHHHHHHHHHHHHCCCEEeh-------------------------------------------
Confidence            6666677889999999999999999999998986644                                           


Q ss_pred             hhcCccCcHHHHHHhccchhHHHHHHHHHHh-cCCCCeEEEEEcCCCcchhhccCCHHHHHHcCCCCc
Q psy14801        330 IEKGFLDEAEELEEMIHSGTAMHVACQAAKS-LRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDE  396 (404)
Q Consensus       330 ~~~~~~~~~~~~~~g~SsGa~~~~a~~~~~~-~~~~~~iv~i~~D~g~rYl~~~~~~~w~~~~~~~~~  396 (404)
                                      |||++++||+++++. ..++++||+|+||+|+|||||+|+++|+++.....|
T Consensus       289 ----------------ssga~~~aAl~~a~~~~~~g~~VV~il~d~G~rYlst~~~~~~~~e~~~~~p  340 (344)
T 3vc3_A          289 ----------------SSGANTVAALRLAQLPENKGKLIVTVHPSFGERYLSSVLFQELRQEAENMQP  340 (344)
T ss_dssp             ----------------HHHHHHHHHHHHHTSGGGTTCEEEEEECBBGGGGTTSTTTHHHHHHHHTCCC
T ss_pred             ----------------hHHHHHHHHHHHhccccCCCCEEEEEECCCchhhccchhhHHHHHHhccCCC
Confidence                            456666666666653 347889999999999999999999999987654444

>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*

Probab=100.00  E-value=7e-59  Score=457.43  Aligned_cols=319  Identities=54%  Similarity=0.925  Sum_probs=268.6

Q ss_pred             cCCCCCCCCeeecCCCCCCCC--CeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801         17 TPTVPGKVPLLPQSKQGSILL--PTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA   94 (404)
Q Consensus        17 ~~~~~g~TPl~~~~~l~~~~g--~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~   94 (404)
                      +...+|+|||+++++|++.+|  ++||+|+|++|||||||||++.+++..+.++|.++|+++||++|+||||+|+|++|+
T Consensus       102 i~~~ig~TPLv~l~~Ls~~~G~~~~v~lK~E~~nptGSfKdR~a~~~i~~a~~~G~l~~g~tVV~aSsGN~G~AlA~aaa  181 (435)
T 1jbq_A          102 ILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAA  181 (435)
T ss_dssp             GGGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTCSCTTCEEEEECSSHHHHHHHHHHH
T ss_pred             HHhhCCCCCeEECcchhhHhCCCceEEEEECCCCCcCCHHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHHHH
Confidence            446789999999999987666  699999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHH
Q psy14801         95 IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEE  174 (404)
Q Consensus        95 ~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~e  174 (404)
                      .+|++|+||||..++..|+++++.+||+|+.++...+|++++..++.+++++++.++.++++||.||.|++.||.++++|
T Consensus       182 ~~Gi~~~IvmP~~~s~~k~~~l~~~GAeVv~v~~~~~~d~~~~~~~~a~~la~~~~~~~~i~q~~n~~n~~ag~~t~a~E  261 (435)
T 1jbq_A          182 VRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADE  261 (435)
T ss_dssp             HHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHHHHHHHHHHHSTTEECCCTTTCTHHHHHHHHTHHHH
T ss_pred             HcCCeEEEEeCCCCCHHHHHHHHhCCCEEEEecCCCCcchHHHHHHHHHHHHHhcCCeEEeCccCCcccHHHHHHHHHHH
Confidence            99999999999999999999999999999999875567766556778889988876778889999998889999999999


Q ss_pred             HHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccC
Q psy14801        175 ILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLD  254 (404)
Q Consensus       175 i~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  254 (404)
                      |++|+..++|.+|+++|+||+++|++.+++...|.+|||+|+|.++.......+..   .....+.+.+++...++..++
T Consensus       262 I~eQl~~~~D~vVvpvGtGGtlaGi~~~lk~~~p~vrVigVep~gs~~~~~~~l~~---~~~~~~~~~gig~~~~~~~l~  338 (435)
T 1jbq_A          262 ILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQ---TEQTTYEVEGIGYDFIPTVLD  338 (435)
T ss_dssp             HHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTCSCSSSGGGGC---CSCCCCSCCSCCCSSCCTTCC
T ss_pred             HHHHcCCCCCEEEEecCCcHhHHHHHHHHHHhCCCCEEEEEecCCchhhchhhhhc---CCCcceeecccccCccchhhh
Confidence            99999867999999999999999999999999999999999999986542222211   111224456666655565566


Q ss_pred             ccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCccccccchhHHhhcCc
Q psy14801        255 RNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGF  334 (404)
Q Consensus       255 ~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~  334 (404)
                      ...+|.++.|+|+|+.++++++++++|++++++||.+++++.+                                     
T Consensus       339 ~~~vd~~~~Vsd~ea~~a~r~La~~eGilve~ssgaalaaa~~-------------------------------------  381 (435)
T 1jbq_A          339 RTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVK-------------------------------------  381 (435)
T ss_dssp             GGGCCEEEEECHHHHHHHHHHHHHHSCCCBCHHHHHHHHHHHH-------------------------------------
T ss_pred             hhhccceEEeCHHHHHHHHHHHHHHcCCEEcHHHHHHHHHHHH-------------------------------------
Confidence            6778999999999999999999999999999877777777654                                     


Q ss_pred             cCcHHHHHHhccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhccCCHHHHHHcCCCCch
Q psy14801        335 LDEAEELEEMIHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEA  397 (404)
Q Consensus       335 ~~~~~~~~~g~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~~~~~~w~~~~~~~~~~  397 (404)
                                            ++++++++++||+|+||+|+||++++|+++||.++++.++.
T Consensus       382 ----------------------~~~~~~~g~~VV~iltd~g~ky~~~~~~~~w~~~~~~~~~~  422 (435)
T 1jbq_A          382 ----------------------AAQELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKEE  422 (435)
T ss_dssp             ----------------------HGGGCCTTCEEEEEECBBGGGGTTTTTCHHHHHHTTCC---
T ss_pred             ----------------------HHHHcCCCCeEEEEEcCCcccccchhhccHHHHhcCCCCcc
Confidence                                  22233456899999999999999999999999999997653

>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*

Probab=100.00  E-value=2.6e-56  Score=428.09  Aligned_cols=308  Identities=32%  Similarity=0.461  Sum_probs=271.5

Q ss_pred             ccCCCCCCCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCE-EEecCCChHH
Q psy14801          8 SNSARNSPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYT-IVEPSSGNTG   86 (404)
Q Consensus         8 ~~~~~~~~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~-vv~~ssGN~g   86 (404)
                      ..+.+.+..+...+|+|||+++++| +..|++||+|+|++|||||||||++.+++..+.++|.+++|++ ||++|+||||
T Consensus         6 ~~i~~~~~~i~~~ig~TPL~~l~~l-~~~g~~i~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~l~~g~~vvv~aSsGN~g   84 (334)
T 3tbh_A            6 DKSKNVAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKLIPGKSIVVESSSGNTG   84 (334)
T ss_dssp             CTTTSCCSSGGGGSSCCCEEECCTT-CCSSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHH
T ss_pred             hhHHHHHHHHHHhcCCCCeEECCcc-cCCCCEEEEEeCCCCCccCcHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCHHH
Confidence            4455667778889999999999999 8888999999999999999999999999999999999899988 5999999999


Q ss_pred             HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhh
Q psy14801         87 IGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLS  166 (404)
Q Consensus        87 ~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~  166 (404)
                      +|+|++|+.+|++|+||||++++..|+++++.+||+|+.++.+.++   +++++.++++.++.++.+|+++|.||.|++.
T Consensus        85 ~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~---~~~~~~a~~~~~~~~~~~~i~~~~np~n~~~  161 (334)
T 3tbh_A           85 VSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALGM---KGAVAMAKKIVAANPNAVLADQFATKYNALI  161 (334)
T ss_dssp             HHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHH---HHHHHHHHHHHHHCTTEEECCTTTCHHHHHH
T ss_pred             HHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCc---hHHHHHHHHHHHhCCCEEECCccCChhHHHH
Confidence            9999999999999999999999999999999999999999863223   4556778888887767889999999988888


Q ss_pred             HHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCC
Q psy14801        167 HYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGY  246 (404)
Q Consensus       167 g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  246 (404)
                      ||.++++||++|+...||.+|+|+|+||+++|++.+++...|..|||+|+|.+++.+.....        ....+.+++.
T Consensus       162 g~~t~~~Ei~~q~~~~~d~vv~pvG~GG~~aGi~~~~k~~~p~~~vigVe~~~~~~~~~g~~--------~~~~~~gi~~  233 (334)
T 3tbh_A          162 HEETTGPEIWEQTNHNVDCFIAGVGTGGTLTGVARALKKMGSHARIVAVEPTESPVLSGGKP--------GPHKIQGIGP  233 (334)
T ss_dssp             HHHTHHHHHHHHTTSCCSEEEEECSSSHHHHHHHHHHHHTTCCCEEEEEEETTSCTTTTCCC--------CCCSCTTSCC
T ss_pred             HHHHHHHHHHHHhCCCCCEEEeccCCcHhHHHHHHHHHHhCCCCEEEEEeeCCchHhhCCCc--------CCeecCCCCC
Confidence            99999999999997789999999999999999999999999999999999999876532111        1233456665


Q ss_pred             cccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh-cCCCCeEEEEecCCCCCccccccc
Q psy14801        247 SFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS-LRPDQRCVVILADGVRNYLTKFIS  325 (404)
Q Consensus       247 ~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~-~~~~~~vv~v~~~~~~~~~~~~~~  325 (404)
                      ...+..+...+.+.++.|+|+|+.++++.+++++|++++|+||.+++++.+++++ ..++.+||+|.||++.+|+++.+.
T Consensus       234 ~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~egi~~epssgaa~aa~~~~~~~~~~~g~~Vv~v~t~~g~ky~~~~~~  313 (334)
T 3tbh_A          234 GFVPDVLDRSLIDEVLCVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKIAERPEMEGKTIVTVIPSFGERYLSTTLY  313 (334)
T ss_dssp             SSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHSGGGTTCEEEEEECBBGGGGTTSGGG
T ss_pred             CcCCHHHHHHhCCEEEEECHHHHHHHHHHHHHHcCeEEcHHHHHHHHHHHHHHHhccCCcCeEEEEECCCCccccCchhh
Confidence            5667777778889999999999999999999999999999999999999998876 367889999999999999998765


Q ss_pred             hh
Q psy14801        326 DE  327 (404)
Q Consensus       326 ~~  327 (404)
                      ++
T Consensus       314 ~~  315 (334)
T 3tbh_A          314 RS  315 (334)
T ss_dssp             TH
T ss_pred             hh
Confidence            54

>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*

Probab=100.00  E-value=7.2e-56  Score=420.21  Aligned_cols=298  Identities=34%  Similarity=0.501  Sum_probs=258.9

Q ss_pred             CcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHH
Q psy14801         16 FTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAI   95 (404)
Q Consensus        16 ~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~   95 (404)
                      .+...+|+|||+++++|++..|.+||+|+|++|||||||||++.+++.++.++|.++|+++||++|+||||+|+|++|++
T Consensus         3 ~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~~~~g~~vv~~ssGN~g~a~A~~a~~   82 (303)
T 2v03_A            3 TLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAAL   82 (303)
T ss_dssp             SGGGGSSCCCEEECSSSSCSSSCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTTCEEEEECSSHHHHHHHHHHHH
T ss_pred             chHhhcCCCCcEECcccccccCCEEEEEeccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHH
Confidence            35567899999999999998899999999999999999999999999999999998888999999999999999999999


Q ss_pred             cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHH
Q psy14801         96 KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI  175 (404)
Q Consensus        96 ~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei  175 (404)
                      +|++|+||||.+++..|+++++.+||+|+.++.+.+|+   ++.+.+++++++.++. |+++|.||.+...||.++++||
T Consensus        83 ~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~---~~~~~a~~~~~~~~~~-~~~~~~n~~~~~~g~~t~~~Ei  158 (303)
T 2v03_A           83 KGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGME---GARDLALEMANRGEGK-LLDQFNNPDNPYAHYTTTGPEI  158 (303)
T ss_dssp             HTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTTTHHH---HHHHHHHHHHHTTSCE-ECCTTTCTHHHHHHHHTHHHHH
T ss_pred             cCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCHH---HHHHHHHHHHHhCCCc-ccCCcCChhhHHHhcCCcHHHH
Confidence            99999999999999999999999999999998643343   4567788888874456 8899999987777999999999


Q ss_pred             HHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccCc
Q psy14801        176 LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDR  255 (404)
Q Consensus       176 ~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  255 (404)
                      ++|+..+||.+|+|+|+|++++|++.+++...|..|+|+|+|.+++.+..               +.+++....+..++.
T Consensus       159 ~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigve~~~~~~~~~---------------~~gl~~~~~~~~~~~  223 (303)
T 2v03_A          159 WQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPG---------------IRRWPTEYLPGIFNA  223 (303)
T ss_dssp             HHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEEECTTCCCTT---------------CCCCCGGGCCTTCCG
T ss_pred             HHHhCCCCCEEEEEeCccHhHHHHHHHHHHhCCCCEEEEEcCCCCccccc---------------CCcCCCCCCCcccch
Confidence            99998679999999999999999999999999999999999999865432               122333334445556


Q ss_pred             cccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCccccccchhHHhhcC
Q psy14801        256 NVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKG  333 (404)
Q Consensus       256 ~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~  333 (404)
                      ..++..+.|+|+|+.++++++++++|++++|+||.+++++.++.++. ++.+||++.||++.+|++..+.++|+..+.
T Consensus       224 ~~~d~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~~~~~~-~~~~vv~i~tg~~~ky~~~~~~~~~~~~~~  300 (303)
T 2v03_A          224 SLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAAAN-PDAVVVAIICDRGDRYLSTGVFGEEHFSQG  300 (303)
T ss_dssp             GGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHS-TTCEEEEEECBBSGGGGGGTTTCC------
T ss_pred             HHCCEEEEECHHHHHHHHHHHHHHcCceEcHHHHHHHHHHHHHHHHC-CCCeEEEEECCCCcccccchhcHHHHHhcc
Confidence            67789999999999999999999999999999999999999988776 788999999999999999988888876543

>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}

Probab=100.00  E-value=3.7e-56  Score=435.51  Aligned_cols=307  Identities=37%  Similarity=0.567  Sum_probs=271.8

Q ss_pred             CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCC-CEEEecCCChHHHHHHHHH
Q psy14801         15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPG-YTIVEPSSGNTGIGLAMVA   93 (404)
Q Consensus        15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~ssGN~g~a~A~~a   93 (404)
                      +.+.+.+|+|||+++++|++..|++||+|+|++|||||||||++.+++.+++++|.++|| ++||++|+||||+|+|++|
T Consensus       115 ~~i~~~ig~TPLv~l~~Ls~~~g~~I~lK~E~lnptGSfKdRgA~~~i~~A~~~G~l~~g~~~VV~aSsGNhG~AlA~aA  194 (430)
T 4aec_A          115 DNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIA  194 (430)
T ss_dssp             SSGGGGSSCCCEEECCGGGTTCSSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHH
T ss_pred             hhhhccCCCCCeEEChhhhhhcCCeEEEEECCCCCCCCHHHHHHHHHHHHHHHcCCCCCCCcEEEEECCCHHHHHHHHHH
Confidence            566788999999999999998899999999999999999999999999999999998888 6799999999999999999


Q ss_pred             HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHH
Q psy14801         94 AIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAE  173 (404)
Q Consensus        94 ~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~  173 (404)
                      +++|++|+||||+.++..|+++++.+||+|+.++...++   +++++.+++++++.++.+|+++|.||.+++.||.++|+
T Consensus       195 a~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~~~~~---~~a~~~a~el~~~~~~~~~i~~~~np~~~~aG~~T~a~  271 (430)
T 4aec_A          195 ASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGM---TGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGP  271 (430)
T ss_dssp             HHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHH---HHHHHHHHHHHHHSTTEEECCTTTCTHHHHHHHHTHHH
T ss_pred             HHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECCCCCh---HHHHHHHHHHHHhcCCcEEecCCCCccHHHHHHHHHHH
Confidence            999999999999999999999999999999999853223   35567788888887778899999999988899999999


Q ss_pred             HHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCccccccc
Q psy14801        174 EILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTL  253 (404)
Q Consensus       174 ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  253 (404)
                      ||++|+..+||++|+++|+||+++|++.+++...|.++||+|+|.+++.+....        ...+.+++++....+..+
T Consensus       272 EI~eQl~~~~D~vVvpvG~GGtlaGi~~~lk~~~p~~kVigVep~~s~~l~~g~--------~~~~~i~Gl~~~~~p~~l  343 (430)
T 4aec_A          272 EIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGK--------PGPHKIQGIGAGFIPKNL  343 (430)
T ss_dssp             HHHHHTTSCEEEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCGGGTCC--------CCCCSCTTSCCSSCCTTC
T ss_pred             HHHHHcCCCCCEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEEeCCCcHhhCCC--------ccceeehhccCCCCcHHH
Confidence            999999778999999999999999999999999999999999999986543211        112345667666667777


Q ss_pred             CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCCCCccccccchhHHhhc
Q psy14801        254 DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGVRNYLTKFISDEWMIEK  332 (404)
Q Consensus       254 ~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~  332 (404)
                      +..++|.++.|+|+|+.++++.+++++|++++|+||++++|+.++.++. .++.+||+|.||++.+|+++.+.++|..+.
T Consensus       344 ~~~~vd~~v~Vsd~ea~~a~r~La~~eGi~vepssGaa~aAal~la~~~~~~g~~VV~Il~d~G~rylst~~~~~~~~~~  423 (430)
T 4aec_A          344 DQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIAVVFPSFGERYLSTPLFQSIREEV  423 (430)
T ss_dssp             CTTTCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHTTSGGGTTCEEEEEECBBGGGGTTSHHHHHHHHHC
T ss_pred             HHHhCCeEEEECHHHHHHHHHHHHHHCCCEEehHHHHHHHHHHHHHHhcCCCcCeEEEEECCCCccccchhhhhhhhhhh
Confidence            7778899999999999999999999999999999999999999887653 478899999999999999998888776543

>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A

Probab=100.00  E-value=1.6e-55  Score=420.07  Aligned_cols=306  Identities=39%  Similarity=0.578  Sum_probs=259.9

Q ss_pred             CCCCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHH
Q psy14801         13 NSPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMV   92 (404)
Q Consensus        13 ~~~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~   92 (404)
                      ....+...+++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.++|.++|+++||++|+||||+|+|++
T Consensus         6 ~~~~i~~~~~~TPL~~~~~l~~~~g~~i~~K~E~~~ptgSfK~R~a~~~l~~a~~~g~~~~g~~vv~assGN~g~alA~~   85 (313)
T 2q3b_A            6 IAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKPDTIILEPTSGNTGIALAMV   85 (313)
T ss_dssp             CCSSGGGGSCCCCEEECSSSCTTCCSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTTCEEEEECSSHHHHHHHHH
T ss_pred             hhhhHHHhcCCCceEECcccccccCcEEEEEehhcCCCCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHH
Confidence            45667788999999999999988889999999999999999999999999999999998888999999999999999999


Q ss_pred             HHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHH
Q psy14801         93 AAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTA  172 (404)
Q Consensus        93 a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a  172 (404)
                      |+.+|++|+||||.+++..|+++++.+||+|+.++.+.+|   +++.+.+++++++.+..+++++|.||.+...||.+++
T Consensus        86 a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~---~~~~~~a~~l~~~~~~~~~~~~~~n~~~~~~~~~t~~  162 (313)
T 2q3b_A           86 CAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADGM---SGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTA  162 (313)
T ss_dssp             HHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHH---HHHHHHHHHHHHHCTTEECCCTTTCTHHHHHHHHTHH
T ss_pred             HHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCCCCH---HHHHHHHHHHHHhCCCEEeCCCCCChhhHHHHHHHHH
Confidence            9999999999999999999999999999999999863223   3456778888888755577899999987767899999


Q ss_pred             HHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccc
Q psy14801        173 EEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATT  252 (404)
Q Consensus       173 ~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  252 (404)
                      +||++|+..+||.+|+|+|+|++++|++.+++...|..|+|+|+|.+++.+.....        ..+.+++++....+..
T Consensus       163 ~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vi~ve~~~~~~~~~~~~--------g~~~~~g~~~~~~~~~  234 (313)
T 2q3b_A          163 EEVWRDTDGKVDIVVAGVGTGGTITGVAQVIKERKPSARFVAVEPAASPVLSGGQK--------GPHPIQGIGAGFVPPV  234 (313)
T ss_dssp             HHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTSCTTTTCCC--------CCCCCTTSCCSSCCTT
T ss_pred             HHHHHHcCCCCCEEEEccCcchhHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCC--------CCcccCCcCCCCCChh
Confidence            99999997679999999999999999999999999999999999999865432111        1233455555555666


Q ss_pred             cCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCCCCccccccchhHH
Q psy14801        253 LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGVRNYLTKFISDEWM  329 (404)
Q Consensus       253 ~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~~~~~~~~~~~~~~  329 (404)
                      +.....+.++.++|+|+.++++++++++|++++|+||.+++++.+++++. .++.+||++.|+++.+|+++.++++|+
T Consensus       235 ~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~~~~~~~~vv~v~~~~g~ky~~~~~~~~~~  312 (313)
T 2q3b_A          235 LDQDLVDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVVVLPDFGERYLSTPLFADVA  312 (313)
T ss_dssp             CCGGGCCEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHTCGGGTTCEEEEEECBBSGGGC---------
T ss_pred             hhHhhccEEEEECHHHHHHHHHHHHHHcCceEchHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccchhhhhhh
Confidence            66667889999999999999999999999999999999999999887654 267899999999999999999888886

>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*

Probab=100.00  E-value=6.6e-56  Score=423.25  Aligned_cols=309  Identities=36%  Similarity=0.476  Sum_probs=264.0

Q ss_pred             CCCCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHH
Q psy14801         13 NSPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMV   92 (404)
Q Consensus        13 ~~~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~   92 (404)
                      ..+.+...+++|||+++++| + .|.+||+|+|++|||||||||++.+++..+.++|.++|+++||++|+||||+|+|++
T Consensus         3 ~~~~i~~~~~~TPL~~l~~l-~-~g~~i~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~   80 (316)
T 1y7l_A            3 IYADNSYSIGNTPLVRLKHF-G-HNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGKEIVDATSGNTGIALAYV   80 (316)
T ss_dssp             CCSSGGGGCCCCCEEECSSS-S-STTCEEEEETTSSGGGBTHHHHHHHHHHHHHHTTSSCTTCEEEESCCSHHHHHHHHH
T ss_pred             chhhhHHhcCCCCcEECccC-C-CCCEEEEEeccCCCCCChHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHH
Confidence            35667788999999999999 6 788999999999999999999999999999999998888999999999999999999


Q ss_pred             HHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCc-EeecCCCCCCChhhHHhhH
Q psy14801         93 AAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNA-VVLDQFRNPNNPLSHYETT  171 (404)
Q Consensus        93 a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~-~~~~e~~np~~si~g~~~~  171 (404)
                      |+++|++|+||||.+++..|+++++.+||+|+.++.+.+|   +++.+.+++++++.++. +++++|.||.++..||.++
T Consensus        81 a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~  157 (316)
T 1y7l_A           81 AAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGM---KGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETT  157 (316)
T ss_dssp             HHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHH---HHHHHHHHHHHHHCTTTEECCCTTTCTHHHHHHHHTH
T ss_pred             HHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCCH---HHHHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999863223   34567788888877666 7889999998877889999


Q ss_pred             HHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhC-CCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccc
Q psy14801        172 AEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKC-PSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAA  250 (404)
Q Consensus       172 a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~-~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  250 (404)
                      ++||++|+.++||.+|+|+|+|++++|++.+++... |..|+|+|+|.+++.......+...  ....+.+++++....+
T Consensus       158 ~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~~vi~ve~~~~~~~~~~~~g~~~--~~~~~~~~gi~~~~~~  235 (316)
T 1y7l_A          158 GPEIWKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEV--KPGPHKIQGIGAGFIP  235 (316)
T ss_dssp             HHHHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHTSCCCCEEEEEEETTSCHHHHHHHTCCC--CCCCCSCTTSCCSSCC
T ss_pred             HHHHHHHcCCCCCEEEEeCCccccHHHHHHHHHHhCCCCCEEEEEecCCCccccccccCCcc--CCCCcccCcCCCCCCC
Confidence            999999998679999999999999999999999988 9999999999998544321111100  0112335566555556


Q ss_pred             cccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCCCCccccccchhH
Q psy14801        251 TTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGVRNYLTKFISDEW  328 (404)
Q Consensus       251 ~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~~~~~~~~~~~~~  328 (404)
                      ..++....+.++.|+|+|+.++++++++++|++++|+||.+++++.+++++. .++.+||++.||++.+|++..++++|
T Consensus       236 ~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epssa~~laa~~~~~~~~~~~~~~vv~i~tg~g~k~~~~~~~~~~  314 (316)
T 1y7l_A          236 KNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLPEFADKLIVVILPSASERYLSTALFEGI  314 (316)
T ss_dssp             TTCCGGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHTSGGGTTCEEEEEECBBCSSCCCTTTC---
T ss_pred             chhhHhhCCEEEEECHHHHHHHHHHHHHhhCCeEcHHHHHHHHHHHHHHHhcCCCCCeEEEEECCCCcccCCccccccc
Confidence            6666777899999999999999999999999999999999999999887754 26789999999999999999888887

>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*

Probab=100.00  E-value=2.7e-55  Score=419.90  Aligned_cols=309  Identities=38%  Similarity=0.573  Sum_probs=269.6

Q ss_pred             CCCCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCC-CEEEecCCChHHHHHHH
Q psy14801         13 NSPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPG-YTIVEPSSGNTGIGLAM   91 (404)
Q Consensus        13 ~~~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~ssGN~g~a~A~   91 (404)
                      ..+.+.+.+++|||+++++|++..|.+||+|+|++|||||||||++.+++.++.++|.++|+ .+||++|+||||+|+|+
T Consensus         5 ~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~G~~~~~~~~vv~assGN~g~alA~   84 (322)
T 1z7w_A            5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAF   84 (322)
T ss_dssp             CCSSGGGGSSCCCEEECCGGGTTCSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHH
T ss_pred             hhhHHHHhcCCCCeEECccccccCCceEEEEecccCCCCchHHHHHHHHHHHHHHcCCCCCCCCEEEEeCCCHHHHHHHH
Confidence            45678888999999999999988889999999999999999999999999999999998888 49999999999999999


Q ss_pred             HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhH
Q psy14801         92 VAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETT  171 (404)
Q Consensus        92 ~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~  171 (404)
                      +|+++|++|+||||.+++..|+++++.+||+|+.++.+.+|   +++.+.+++++++.++.+|+++|.||.++..||.++
T Consensus        85 aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~---~~~~~~a~~~~~~~~~~~~i~~~~n~~~~~~g~~t~  161 (322)
T 1z7w_A           85 TAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGM---KGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETT  161 (322)
T ss_dssp             HHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHH---HHHHHHHHHHHHHCTTEEECCTTTCTHHHHHHHHTH
T ss_pred             HHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCH---HHHHHHHHHHHHhCCCeEeCCCCCChhHHHHHHHHH
Confidence            99999999999999999999999999999999999863223   345677888888876788889999998877899999


Q ss_pred             HHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCccccc
Q psy14801        172 AEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAAT  251 (404)
Q Consensus       172 a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  251 (404)
                      ++||++|+..+||.+|+|+|+|++++|++.+++...|..|+++|+|.+++.+.....        ....+++++....+.
T Consensus       162 ~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigve~~~~~~~~~~~~--------~~~~~~gl~~~~~~~  233 (322)
T 1z7w_A          162 GPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKP--------GPHKIQGIGAGFIPS  233 (322)
T ss_dssp             HHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCGGGTCCC--------CCCSCTTSCCSSCCT
T ss_pred             HHHHHHHhcCCCCEEEEecCccHhHHHHHHHHHHcCCCCEEEEEecCCCccccCCCC--------CCcccCcCcCCCCCh
Confidence            999999997679999999999999999999999999999999999999865432111        112244555444555


Q ss_pred             ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCCCCccccccchhHHh
Q psy14801        252 TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGVRNYLTKFISDEWMI  330 (404)
Q Consensus       252 ~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~~~~~~~~~~~~~~~  330 (404)
                      .+.....+..+.|+|+|+.++++++++++|++++|+||++++++.++.++. .++.+||++.||++.+|++..+.++|..
T Consensus       234 ~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssga~~aaa~~~~~~~~~~~~~vv~i~tg~g~k~~~~~~~~~~~~  313 (322)
T 1z7w_A          234 VLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERYLSTVLFDATRK  313 (322)
T ss_dssp             TCCGGGCSEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHTSGGGTTCEEEEEECBBGGGGTTSGGGHHHHH
T ss_pred             hhhHHhCCEEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHHHHHhcCCCCCeEEEEECCCCcccccchhhhHHHH
Confidence            666777899999999999999999999999999999999999998887653 3678999999999999999988888875


Q ss_pred             hc
Q psy14801        331 EK  332 (404)
Q Consensus       331 ~~  332 (404)
                      +.
T Consensus       314 ~~  315 (322)
T 1z7w_A          314 EA  315 (322)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=100.00  E-value=4.1e-55  Score=445.04  Aligned_cols=315  Identities=57%  Similarity=0.949  Sum_probs=282.1

Q ss_pred             CCCCCCCCeeecCCCCCCCC--CeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHH
Q psy14801         18 PTVPGKVPLLPQSKQGSILL--PTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAI   95 (404)
Q Consensus        18 ~~~~g~TPl~~~~~l~~~~g--~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~   95 (404)
                      ...+|+|||+++++|++.+|  ++||+|+|++|||||||||++.+++..+.++|.++||++||++|+||||+|+|++|+.
T Consensus        55 ~~~ig~TPl~~l~~l~~~~g~~~~i~~K~E~~~ptGS~K~R~a~~~i~~a~~~g~~~~g~~vv~~ssGN~g~a~A~~a~~  134 (527)
T 3pc3_A           55 LEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQGLLKPGYTIIEPTSGNTGIGLAMACAV  134 (527)
T ss_dssp             GGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHHTCCCTTCEEEEECSSHHHHHHHHHHHH
T ss_pred             HhhcCCCCcEEcchhhhhcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHHHHH
Confidence            35789999999999987666  7999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHH
Q psy14801         96 KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI  175 (404)
Q Consensus        96 ~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei  175 (404)
                      +|++|+||||..++..|+++++.+||+|+.++...+|++.+..++.+++++++.++.+|+++|.||.|++.||.++|+||
T Consensus       135 ~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~n~~~g~~t~~~Ei  214 (527)
T 3pc3_A          135 KGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEI  214 (527)
T ss_dssp             HTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTTSCTTSTTSHHHHHHHHHHHSSSEECCCTTTCTHHHHHHHHTHHHHH
T ss_pred             hCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCCcccHHHHHHHHHHHHHhCCCcEecCCCCCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999765677766777889999988777888899999988899999999999


Q ss_pred             HHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccCc
Q psy14801        176 LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDR  255 (404)
Q Consensus       176 ~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  255 (404)
                      ++|+..+||++|+++|+||+++|++.+++...|.+|||+|+|.+++.........   .....+.+.+++..+.+..++.
T Consensus       215 ~~q~~~~~d~vv~~vG~GG~~~G~~~~~k~~~p~~~vigve~~~~~~~~~~~~~~---~~~~~~~~~gi~~~~~p~~~~~  291 (527)
T 3pc3_A          215 LWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNK---TDVQFYEVEGIGYDFPPTVFDD  291 (527)
T ss_dssp             HHHTTTCCSEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEETTCCCSSSGGGGC---CSCCCCSCCSCCCSSCCTTCCG
T ss_pred             HHhcCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEecCCcccccchhhcC---CCCCceeccccCCCCCCcccch
Confidence            9999878999999999999999999999999999999999999987543322221   1122345677777777777777


Q ss_pred             cccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCccccccchhHHhhcCcc
Q psy14801        256 NVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFL  335 (404)
Q Consensus       256 ~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~  335 (404)
                      ..+|.++.|+|.|+.++++.+++.+|+++||+||.+++|+.+++++..++.+||++.||.+.+|+++.+.++|+....+.
T Consensus       292 ~~~d~~~~V~d~e~~~a~r~l~~~eGi~~~pssa~alaaal~~~~~~~~~~~vv~i~~d~g~ryls~~~~~~~l~~rg~~  371 (527)
T 3pc3_A          292 TVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHAALEHARKLKKGQRCVVILPDGIRNYMTKFVSDNWMEARNFK  371 (527)
T ss_dssp             GGCCEEEEECGGGTHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHTTCCTTCEEEEEECBBGGGGTTTTTSHHHHHHTTSS
T ss_pred             hhCcEEEEECHHHHHHHHHHHHHHcCceEcHHHHHHHHHHHHHHHHcCCCCeEEEEEcCcchhhHhhhhcHHHHHhcCCc
Confidence            88999999999999999999999999999999999999999998887788999999999999999999999997766554

>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*

Probab=100.00  E-value=1.3e-55  Score=421.99  Aligned_cols=293  Identities=34%  Similarity=0.480  Sum_probs=258.9

Q ss_pred             CCcCCCCCCCCeeecCCCCCC-------CCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHH
Q psy14801         15 PFTPTVPGKVPLLPQSKQGSI-------LLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGI   87 (404)
Q Consensus        15 ~~~~~~~g~TPl~~~~~l~~~-------~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~   87 (404)
                      ..+...+|+|||+++++|++.       .|++||+|+|++|||||||||++.+++..+.++|.++|+++||++|+||||+
T Consensus         7 ~~i~~~ig~TPL~~~~~l~~~~~~~~~~~g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~l~~~~~vv~aSsGN~g~   86 (325)
T 3dwg_A            7 DSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATILEPTSGNTGI   86 (325)
T ss_dssp             SSTGGGCSCCCEEECTTTSSBSSCBTTBCCEEEEEEETTSSTTSBTTHHHHHHHHHHHHHTTCCCTTCEEEEECSSHHHH
T ss_pred             cCHHHhcCCCCcEEccccchhhcccccCCCcEEEEEECCCCCCCChHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHH
Confidence            345567899999999999887       7889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhH
Q psy14801         88 GLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSH  167 (404)
Q Consensus        88 a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g  167 (404)
                      |+|++|+++|++|+||||.+++..|+++++.+||+|+.++.+.++   +++++.+++++++.++.+|+++|.||.++..|
T Consensus        87 alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~---~~~~~~a~~l~~~~~~~~~~~~~~np~~~~~g  163 (325)
T 3dwg_A           87 SLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGS---NTAVATAKELAATNPSWVMLYQYGNPANTDSH  163 (325)
T ss_dssp             HHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECSTTTH---HHHHHHHHHHHHHCTTSBCCCTTTCHHHHHHH
T ss_pred             HHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCH---HHHHHHHHHHHHhCCCeEeCCCCCCHHHHHHH
Confidence            999999999999999999999999999999999999999864333   45577788898887668889999999877789


Q ss_pred             HhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCc
Q psy14801        168 YETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYS  247 (404)
Q Consensus       168 ~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  247 (404)
                      |.++++||++|+.. ||.+|+|+|+||+++|++.+++...|..|||+|+|.+++.+..               +.+++..
T Consensus       164 ~~t~~~Ei~~q~~~-~d~vv~pvG~GG~~aGi~~~~k~~~p~~~vigVe~~~~~~~~~---------------~~~i~~~  227 (325)
T 3dwg_A          164 YCGTGPELLADLPE-ITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYGEGVYA---------------LRNMDEG  227 (325)
T ss_dssp             HHTHHHHHHHHCTT-CCEEEEECSSSHHHHHHHHHHHHHSTTCEEEEEEEECCGGGGC---------------CSSGGGC
T ss_pred             HHHHHHHHHHhcCC-CCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEeeCCCcchhc---------------cCcccCC
Confidence            99999999999985 9999999999999999999999999999999999999865411               1223333


Q ss_pred             ccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhc-CCCCe--EEEEecCCCCCcccc-c
Q psy14801        248 FAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSL-RPDQR--CVVILADGVRNYLTK-F  323 (404)
Q Consensus       248 ~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~-~~~~~--vv~v~~~~~~~~~~~-~  323 (404)
                      ..+..++..+.+..+.|+|+|+.++++.+++++|++++|+||.+++++.+++++. .++.+  ||++.||++.+|+++ .
T Consensus       228 ~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~egi~~epssa~a~aa~~~~~~~~~~~g~~~~Vv~i~~g~g~ky~~~~~  307 (325)
T 3dwg_A          228 FVPELYDPEILTARYSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGVGAGALAAGERADIALVVADAGWKYLSTGA  307 (325)
T ss_dssp             CCCTTCCGGGCSEEEEEEHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECBBGGGGGGGTT
T ss_pred             cCcccccHhhCCeEEEECHHHHHHHHHHHHHHcCceechhHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCccccCchh
Confidence            4555666778899999999999999999999999999999999999999988754 35666  999999999999998 5


Q ss_pred             cch
Q psy14801        324 ISD  326 (404)
Q Consensus       324 ~~~  326 (404)
                      |++
T Consensus       308 ~~~  310 (325)
T 3dwg_A          308 YAG  310 (325)
T ss_dssp             TSS
T ss_pred             hcC
Confidence            544

>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*

Probab=100.00  E-value=1.7e-55  Score=424.20  Aligned_cols=306  Identities=30%  Similarity=0.457  Sum_probs=268.2

Q ss_pred             CCCcCCCCCCCCeeecCCCCC----CCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHH
Q psy14801         14 SPFTPTVPGKVPLLPQSKQGS----ILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGL   89 (404)
Q Consensus        14 ~~~~~~~~g~TPl~~~~~l~~----~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~   89 (404)
                      ++.+...+|+|||+++++|++    ..|++||+|+|++|||||||||++.+++..+.++|.++++++||++|+||||+|+
T Consensus        14 ~~~i~~~~g~TPL~~~~~l~~~~~~~~g~~v~~K~E~~~ptGSfKdR~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~al   93 (343)
T 2pqm_A           14 YHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIKDGRLKPGMEIIESTSGNTGIAL   93 (343)
T ss_dssp             ESSGGGGSSCCCEEECCGGGCSTTSCTTCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTSSCTTCEEEEECSSHHHHHH
T ss_pred             HHHHHhhcCCCCeEECCccccccccccCcEEEEEeccCCCCCChHHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHH
Confidence            456778899999999999988    7889999999999999999999999999999999998888899999999999999


Q ss_pred             HHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCc-EeecCCCCCCChhhHH
Q psy14801         90 AMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNA-VVLDQFRNPNNPLSHY  168 (404)
Q Consensus        90 A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~-~~~~e~~np~~si~g~  168 (404)
                      |++|+.+|++|+||||.+++..|+++++.+||+|+.++.+.+|   +++.+.+++++++.+.. +++++|.||.|++.||
T Consensus        94 A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~---~~~~~~a~~~~~~~~~~y~~~~~~~n~~n~~~g~  170 (343)
T 2pqm_A           94 CQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGKKGM---PGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH  170 (343)
T ss_dssp             HHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHH---HHHHHHHHHHHHHSTTTEEECCTTTCHHHHHHHH
T ss_pred             HHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCH---HHHHHHHHHHHHhCCCcEEECCCCCChhHHHHHH
Confidence            9999999999999999999999999999999999999863223   34567788888887665 6679999998888899


Q ss_pred             hhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcc
Q psy14801        169 ETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSF  248 (404)
Q Consensus       169 ~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  248 (404)
                      .+++ ||++|+.++||.+|+|+|+||+++|++.+++...|..|||+|+|.+++.......        ..+.+++++...
T Consensus       171 ~t~~-Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~~~~--------~~~~~~gl~~~~  241 (343)
T 2pqm_A          171 YTAN-EIWEDTDGEVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAK--------GPHGIQGIGAGF  241 (343)
T ss_dssp             HHHH-HHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCTTTTCCC--------CCCCCTTCCCSS
T ss_pred             HHHH-HHHHHcCCCCCEEEEecCCchhHHHHHHHHHHcCCCCEEEEEecCCCcccccCCC--------CCeecCccCCCC
Confidence            9999 9999998779999999999999999999999999999999999999865432111        123345555555


Q ss_pred             cccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCCCCccccccchh
Q psy14801        249 AATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGVRNYLTKFISDE  327 (404)
Q Consensus       249 ~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~~~~~~~~~~~~  327 (404)
                      .+..+.....+.++.|+|+|+.++++++++++|++++|+||.+++++.+++++. .++.+||++.||++.+|++..++++
T Consensus       242 ~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~~~~~~~~vv~i~tg~g~ky~~~~~~~~  321 (343)
T 2pqm_A          242 IPDIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKEAEKPENEGKTIVIIVPSCGERYLSTDLYKI  321 (343)
T ss_dssp             CCTTCCGGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHTSGGGTTCEEEEEECBBGGGGTTSSTTTS
T ss_pred             CCHHHHHHhCCeEEEECHHHHHHHHHHHHHHhCCeEchhHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCccccchhhhhh
Confidence            566666778899999999999999999999999999999999999999887764 4688999999999999999988888


Q ss_pred             HHhh
Q psy14801        328 WMIE  331 (404)
Q Consensus       328 ~~~~  331 (404)
                      |...
T Consensus       322 ~~~~  325 (343)
T 2pqm_A          322 KDEG  325 (343)
T ss_dssp             CCCS
T ss_pred             Hhhc
Confidence            8644

>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}

Probab=100.00  E-value=9.7e-55  Score=413.69  Aligned_cols=299  Identities=38%  Similarity=0.555  Sum_probs=238.8

Q ss_pred             CCCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHH
Q psy14801         14 SPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVA   93 (404)
Q Consensus        14 ~~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a   93 (404)
                      +..+...+++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.++|.++++++||++|+||||+|+|++|
T Consensus         5 ~~~i~~~~~~TPL~~l~~l~~~~g~~i~~K~E~~~ptgSfK~R~a~~~l~~a~~~g~~~~g~~vv~assGN~g~a~A~~a   84 (308)
T 2egu_A            5 VNSITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPGDTIVEPTSGNTGIGLAMVA   84 (308)
T ss_dssp             CSCGGGGSSCCCEEECCSSSCTTSCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTTCEEEEECCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCeEECCcccccCCCEEEEEecccCCCCChHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHHH
Confidence            45667789999999999999888999999999999999999999999999999999888888999999999999999999


Q ss_pred             HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHH
Q psy14801         94 AIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAE  173 (404)
Q Consensus        94 ~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~  173 (404)
                      +.+|++|+||||.+++..|+++++.+||+|+.++.+.+|   +++.+.+++++++.+. +++++|.||.+...||.++++
T Consensus        85 ~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~---~~~~~~a~~l~~~~~~-~~~~~~~n~~~~~~g~~t~~~  160 (308)
T 2egu_A           85 AAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQGM---RGAIAKAEELVREHGY-FMPQQFKNEANPEIHRLTTGK  160 (308)
T ss_dssp             HHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGGGHH---HHHHHHHHHHHHHHCC-BCC--------------CHHH
T ss_pred             HHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCH---HHHHHHHHHHHHHCcC-CcCCcCCChhHHHHHHHHHHH
Confidence            999999999999999999999999999999999863223   3456678888887654 777899999988889999999


Q ss_pred             HHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCccccccc
Q psy14801        174 EILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTL  253 (404)
Q Consensus       174 ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  253 (404)
                      ||++|+.++||.+|+|+|+|++++|++.+++...|..|+|+|+|.+++.......        ..+.+++++....+..+
T Consensus       161 Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~--------~~~~~~g~~~~~~~~~~  232 (308)
T 2egu_A          161 EIVEQMGDQLDAFVAGVGTGGTITGAGKVLREAYPNIKIYAVEPADSPVLSGGKP--------GPHKIQGIGAGFVPDIL  232 (308)
T ss_dssp             HHHHHHTTCCCEEEEEGGGTHHHHHHHHHHHHHCTTCEEEEEEECC-------------------------------CCC
T ss_pred             HHHHHcCCCCCEEEEeeCCchhHHHHHHHHHHhCCCCEEEEEEeCCCccccCCCC--------CCcccCccCCCCCCHhH
Confidence            9999998779999999999999999999999999999999999999865432111        12334555544455556


Q ss_pred             CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcccccc
Q psy14801        254 DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFI  324 (404)
Q Consensus       254 ~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~~~  324 (404)
                      .....+.++.++|+|+.++++++++++|++++|+||.+++++.+++++..++.+||++.||++.+|++..+
T Consensus       233 ~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~epssa~a~aa~~~~~~~~~~~~~vv~i~tg~g~ky~~~~~  303 (308)
T 2egu_A          233 DTSIYDGVITVTTEEAFAAARRAAREEGILGGISSGAAIHAALKVAKELGKGKKVLAIIPSNGERYLSTPL  303 (308)
T ss_dssp             CCCSCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHHCTTCEEEEEECBBGGGGTTSST
T ss_pred             HHHhcCeEEEECHHHHHHHHHHHHHHhCceEcHHHHHHHHHHHHHHHhcCCCCeEEEEECCCCcccccchh
Confidence            66678899999999999999999999999999999999999999877656788999999999999988754

>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*

Probab=100.00  E-value=2e-54  Score=410.73  Aligned_cols=296  Identities=39%  Similarity=0.639  Sum_probs=258.1

Q ss_pred             CCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCC--EEEecCCChHHHHHHHHHHH
Q psy14801         18 PTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGY--TIVEPSSGNTGIGLAMVAAI   95 (404)
Q Consensus        18 ~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~--~vv~~ssGN~g~a~A~~a~~   95 (404)
                      ...+|+|||+++++|++..|.+||+|+|++|||||||||++.+++.++.++|.++|++  +||++|+||||+|+|++|++
T Consensus         4 ~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~~~~g~~~~vv~assGN~g~a~A~~a~~   83 (304)
T 1ve1_A            4 EGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAAS   83 (304)
T ss_dssp             GGGCCCCCEEECCSSSCTTSCEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTTSCCEEEESCCSHHHHHHHHHHHH
T ss_pred             HHhcCCCCcEECcccccccCCEEEEEecccCCCCcHHHHHHHHHHHHHHHcCCCCCCCccEEEEeCCcHHHHHHHHHHHH
Confidence            3467899999999999888899999999999999999999999999999999888888  99999999999999999999


Q ss_pred             cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHH
Q psy14801         96 KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI  175 (404)
Q Consensus        96 ~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei  175 (404)
                      +|++|+||||.+++..|+++++.+||+|+.++.+.+|   +++++.+++++++ ++.+|+++|.||.+...||.++++||
T Consensus        84 ~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~~~~---~~~~~~a~~l~~~-~~~~~~~~~~n~~~~~g~~~t~~~Ei  159 (304)
T 1ve1_A           84 RGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRM---LAAREEALRLKEE-LGAFMPDQFKNPANVRAHYETTGPEL  159 (304)
T ss_dssp             HTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTTTHH---HHHHHHHHHHHHH-HTCBCCCTTTCHHHHHHHHHTHHHHH
T ss_pred             cCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCH---HHHHHHHHHHHhc-CCCEeCCCCCChhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999874224   3456678888876 46778899999986655689999999


Q ss_pred             HHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccCc
Q psy14801        176 LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDR  255 (404)
Q Consensus       176 ~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  255 (404)
                      ++|+.++||.+|+|+|+|++++|++.+++...|..|||+|+|.+++.+....        .....+++++....+..+..
T Consensus       160 ~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vi~ve~~~~~~~~~g~--------~~~~~~~gl~~~~~~~~~~~  231 (304)
T 1ve1_A          160 YEALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLSGGK--------MGQHGFQGMGPGFIPENLDL  231 (304)
T ss_dssp             HHHTTTCCSEEEEECSSSHHHHHHHHHHHTTCTTCEEEEEEEGGGCTTTTCC--------CCCCSCTTSCCSSCCTTCCG
T ss_pred             HHHcCCCCCEEEEecCCchhHHHHHHHHHHhCCCCEEEEEecCCCccccCCC--------CCCcccCCCCCCCCChhhhh
Confidence            9999877999999999999999999999999999999999999986543211        11123455555555666666


Q ss_pred             cccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcccc-ccc
Q psy14801        256 NVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK-FIS  325 (404)
Q Consensus       256 ~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~-~~~  325 (404)
                      ...+..+.|+|+|+.++++++++++|++++|+||.+++++.+++++..++.+||++.||++.+|+++ .++
T Consensus       232 ~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epssa~a~aa~~~~~~~~~~~~~vv~i~tg~g~ky~~~~~~~  302 (304)
T 1ve1_A          232 SLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVARELGPGKRVACISPDGGWKYLSTPLYA  302 (304)
T ss_dssp             GGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHHCTTCEEEEEECBBSGGGTTSTTTC
T ss_pred             hhCCEEEEECHHHHHHHHHHHHHHhCcEEcHHHHHHHHHHHHHHHhcCCCCeEEEEECCCCccCCCcccCC
Confidence            7789999999999999999999999999999999999999998887767889999999999999987 443

>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*

Probab=100.00  E-value=1.1e-52  Score=398.43  Aligned_cols=289  Identities=39%  Similarity=0.569  Sum_probs=249.2

Q ss_pred             CcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHH
Q psy14801         16 FTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAI   95 (404)
Q Consensus        16 ~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~   95 (404)
                      .+...+++|||+++++|+    .+||+|+|++|||||||||++.+++..+.++|.++++  ||++|+||||+|+|++|++
T Consensus        13 ~~~~~~~~TPL~~l~~l~----~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~~~~~--vv~aSsGN~g~a~A~aa~~   86 (303)
T 1o58_A           13 MMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG--IVEPTSGNMGIAIAMIGAK   86 (303)
T ss_dssp             HHHHHSCCCCEEECTTTC----TTEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCTTC--EEEECSSHHHHHHHHHHHH
T ss_pred             hhhhccCCCCeEECccCC----ceEEEEecCCCCCCChHHHHHHHHHHHHHHcCCCCCC--EEEECchHHHHHHHHHHHH
Confidence            344678999999999886    5899999999999999999999999999998876544  9999999999999999999


Q ss_pred             cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHH
Q psy14801         96 KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI  175 (404)
Q Consensus        96 ~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei  175 (404)
                      +|++|+||||.+++..|+++++.+||+|+.++++.+|+   ++++.+++++++. +.+|+++|.||.++..||.++++||
T Consensus        87 ~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~---~~~~~a~~~~~~~-~~~~~~~~~n~~~~~~g~~t~~~Ei  162 (303)
T 1o58_A           87 RGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMK---GAVEKALEISRET-GAHMLNQFENPYNVYSHQFTTGPEI  162 (303)
T ss_dssp             HTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHH---HHHHHHHHHHHHH-CCBCCCTTTCHHHHHHHHHTHHHHH
T ss_pred             cCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCHH---HHHHHHHHHHHhc-CeEeCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998632243   4466788888776 5677899999988777999999999


Q ss_pred             HHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCC-cEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccC
Q psy14801        176 LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPS-CKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLD  254 (404)
Q Consensus       176 ~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~-~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  254 (404)
                      ++|+.++||.+|+|+|+|++++|++.+++...|. .|+|+|+|.+++.+.....        ....+++++....+..++
T Consensus       163 ~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~~vigve~~~~~~~~~g~~--------~~~~~~gi~~~~~~~~~~  234 (303)
T 1o58_A          163 LKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQP--------GKHAIQGIGAGFVPKILD  234 (303)
T ss_dssp             HHHTTTCCSEEEEECSSSHHHHHHHHHHHHHHGGGSEEEEEEETTSCTTTTCCC--------CCCCCTTSCCSSCCTTCC
T ss_pred             HHHcCCCCCEEEEeeCCcccHHHHHHHHHHhCCCCCEEEEEecCCCccccCCCC--------CCeecCcCCCCCcCHHHH
Confidence            9999867999999999999999999999998888 9999999999865442111        112345555444555666


Q ss_pred             ccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcccc
Q psy14801        255 RNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK  322 (404)
Q Consensus       255 ~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~  322 (404)
                      ....+..+.++|+|+.++++++++++|++++|+||.+++++.++.++..++.+||++.||++.+|+++
T Consensus       235 ~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~~~~~~~vv~i~tg~g~ky~~~  302 (303)
T 1o58_A          235 RSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLGPDARVVTVAPDHAERYLSI  302 (303)
T ss_dssp             GGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHTSCTTCCEEEEECBBGGGCTTT
T ss_pred             HHhCCeEEEECHHHHHHHHHHHHHHcCceEcHHHHHHHHHHHHHHHHcCCCCEEEEEECCCCcccccC
Confidence            66788999999999999999999999999999999999999998887667889999999999999764

>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}

Probab=100.00  E-value=2.8e-49  Score=383.44  Aligned_cols=294  Identities=20%  Similarity=0.231  Sum_probs=243.4

Q ss_pred             CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801         15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA   94 (404)
Q Consensus        15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~   94 (404)
                      +.+.+.+|+|||+++++|++.+|++||+|+|++|||||||||++.+++.++.++|.    ++||++|+||||+|+|++|+
T Consensus        30 ~~v~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~~ptgSfKdR~a~~~l~~a~~~g~----~~vv~aSsGN~g~alA~~a~  105 (360)
T 2d1f_A           30 TPVTLLEGGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHGQ----RAVLCASTGNTSASAAAYAA  105 (360)
T ss_dssp             CCCCCCCCCCCEEECHHHHHHHSSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTC----SEEEECCSSHHHHHHHHHHH
T ss_pred             CccccccCCCCCeechhhHHHhCCeEEEEECCCCCCcCHHHHHHHHHHHHHHHCCC----CEEEEeCCcHHHHHHHHHHH
Confidence            34567889999999999988788899999999999999999999999999998887    89999999999999999999


Q ss_pred             HcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHH
Q psy14801         95 IKGYKMVVVMPMK-MSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAE  173 (404)
Q Consensus        95 ~~G~~~~iv~p~~-~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~  173 (404)
                      ++|++|+||||.+ ++..|+++++.+||+|+.+++  +|+   ++.+.+++++++.++.+++++ .||. .+.||.++++
T Consensus       106 ~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~--~~~---~~~~~a~~l~~~~~~~~~i~~-~n~~-~~~g~~t~~~  178 (360)
T 2d1f_A          106 RAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDG--NFD---DCLELARKMAADFPTISLVNS-VNPV-RIEGQKTAAF  178 (360)
T ss_dssp             HHTCEEEEEECSSCCCHHHHHHHHHTTCEEEEBSS--CHH---HHHHHHHHHHHHCTTEEECST-TCHH-HHHHHTHHHH
T ss_pred             HcCCcEEEEEcCCCCCHHHHHHHHHcCCEEEEECC--CHH---HHHHHHHHHHHhcCCeEEcCC-CChh-hhhhHHHHHH
Confidence            9999999999998 999999999999999999986  344   446678888887755677776 7886 4678999999


Q ss_pred             HHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCC------CcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCc
Q psy14801        174 EILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCP------SCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYS  247 (404)
Q Consensus       174 ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~------~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  247 (404)
                      ||++|+...||.+|+|+|+||+++|++.+++...+      ..|+++|+|.++..+.......     ...+.+++++..
T Consensus       179 Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~~~~~g~~~~-----~~~t~a~gl~~~  253 (360)
T 2d1f_A          179 EIVDVLGTAPDVHALPVGNAGNITAYWKGYTEYHQLGLIDKLPRMLGTQAAGAAPLVLGEPVS-----HPETIATAIRIG  253 (360)
T ss_dssp             HHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHTTSCSSCCEEEEEEEGGGCHHHHSSCCS-----SCCCSCGGGCCS
T ss_pred             HHHHHcCCCCCEEEEeCCchHHHHHHHHHHHHHHhccccccCceEEEEecCCCCHHhcCCccC-----CccchHHHhCCC
Confidence            99999986799999999999999999999987643      5799999999875432221111     011233444332


Q ss_pred             cccc-----ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh--cCCCCeEEEEecCCCCCcc
Q psy14801        248 FAAT-----TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYL  320 (404)
Q Consensus       248 ~~~~-----~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~--~~~~~~vv~v~~~~~~~~~  320 (404)
                      ....     .+.+.+.+..+.++|+|+.++++++++++|++++|+||.+++++.++.++  ..++.+||++.||++.+|.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~eGi~~epssa~alaa~~~~~~~~~~~~~~~vv~i~tg~~~k~~  333 (360)
T 2d1f_A          254 SPASWTSAVEAQQQSKGRFLAASDEEILAAYHLVARVEGVFVEPASAASIAGLLKAIDDGWVARGSTVVCTVTGNGLKDP  333 (360)
T ss_dssp             SCTTHHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHTSSCTTCEEEEEECBBGGGCH
T ss_pred             CCCcHHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCeeECchHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCCcCCH
Confidence            2110     01223557889999999999999999999999999999999999998874  4578899999999998887


Q ss_pred             cccc
Q psy14801        321 TKFI  324 (404)
Q Consensus       321 ~~~~  324 (404)
                      +..+
T Consensus       334 ~~~~  337 (360)
T 2d1f_A          334 DTAL  337 (360)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A

Probab=100.00  E-value=5.5e-49  Score=380.48  Aligned_cols=293  Identities=21%  Similarity=0.256  Sum_probs=242.4

Q ss_pred             CCcCCCCCCCCeeec--CCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHH
Q psy14801         15 PFTPTVPGKVPLLPQ--SKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMV   92 (404)
Q Consensus        15 ~~~~~~~g~TPl~~~--~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~   92 (404)
                      +.+.+.+|+|||+++  ++|++..|++||+|+|++|||||||||++.+++.++.++|.    ++||++|+||||+|+|++
T Consensus        20 ~~v~~~~g~TPL~~~~~~~l~~~~g~~v~~K~E~~~ptgS~KdR~a~~~l~~a~~~g~----~~vv~~SsGN~g~alA~~   95 (351)
T 3aey_A           20 PVISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGA----QAVACASTGNTAASAAAY   95 (351)
T ss_dssp             CCCCSCCCCCCEEECCCCHHHHTTTCEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTC----SEEEESCSSHHHHHHHHH
T ss_pred             CceecCCCCCCeeecCchhhHHHhCCeEEEEecCCCCcccHHHHHHHHHHHHHHhcCC----CEEEEeCCCHHHHHHHHH
Confidence            456678999999999  88888888999999999999999999999999999998887    899999999999999999


Q ss_pred             HHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhH
Q psy14801         93 AAIKGYKMVVVMPMK-MSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETT  171 (404)
Q Consensus        93 a~~~G~~~~iv~p~~-~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~  171 (404)
                      |+.+|++|+||||.+ ++..|+++++.+||+|+.+++  +|+   ++.+.+++++++.+ .+|+++ .||. .+.||.++
T Consensus        96 a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~V~~v~~--~~~---~~~~~a~~l~~~~~-~~~~~~-~n~~-~~~g~~t~  167 (351)
T 3aey_A           96 AARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEG--NFD---DALRLTQKLTEAFP-VALVNS-VNPH-RLEGQKTL  167 (351)
T ss_dssp             HHHHTSEEEEEEETTCSCHHHHHHHHHTTCEEEEEES--CHH---HHHHHHHHHHHHSS-EEECST-TCHH-HHHHHHHH
T ss_pred             HHHcCCCEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHH---HHHHHHHHHHHhcC-cEecCC-CCcc-ceeeeeeH
Confidence            999999999999998 999999999999999999986  343   44667888887764 667766 7886 46789999


Q ss_pred             HHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCC------CcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCC
Q psy14801        172 AEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCP------SCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIG  245 (404)
Q Consensus       172 a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~------~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~  245 (404)
                      ++||++|+...||.+|+|+|+||+++|++.+++...+      ..|+++|+|.++..+.......     ...+.+++++
T Consensus       168 ~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~~~~~g~~~~-----~~~t~a~gl~  242 (351)
T 3aey_A          168 AFEVVDELGDAPHYHALPVGNAGNITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVE-----RPETLATAIR  242 (351)
T ss_dssp             HHHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHHTSCSSCCEEEEEEEGGGCHHHHTSCCS-----SCCCSCGGGC
T ss_pred             HHHHHHHcCCCCCEEEEecCchHHHHHHHHHHHHHHhccccCCCCeEEEEecCCCChhhcCcccC-----CccchhHhhc
Confidence            9999999986799999999999999999999987643      5799999999875432211111     1112334443


Q ss_pred             Cccccc-c----cCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh--cCCCCeEEEEecCCCCC
Q psy14801        246 YSFAAT-T----LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--LRPDQRCVVILADGVRN  318 (404)
Q Consensus       246 ~~~~~~-~----~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~--~~~~~~vv~v~~~~~~~  318 (404)
                      ...... .    +.+.+.+..+.++|+|+.++++++++++|++++|+||.+++++.++.++  ..++.+||++.||++.+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~~~~~~~~~vv~i~tg~~~k  322 (351)
T 3aey_A          243 IGNPASWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFKLLREGRLEPESTVVLTLTGHGLK  322 (351)
T ss_dssp             CSSCTTHHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHTCCCBCHHHHHHHHHHHHHHHTTCSCTTCEEEEEECBBGGG
T ss_pred             CCCCCCHHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCEEECchHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCC
Confidence            322110 0    1133557889999999999999999999999999999999999998874  45788999999999988


Q ss_pred             cccccc
Q psy14801        319 YLTKFI  324 (404)
Q Consensus       319 ~~~~~~  324 (404)
                      |.+..+
T Consensus       323 ~~~~~~  328 (351)
T 3aey_A          323 DPATAE  328 (351)
T ss_dssp             CHHHHC
T ss_pred             CHHHHH
Confidence            877554

>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*

Probab=100.00  E-value=3e-49  Score=383.96  Aligned_cols=299  Identities=18%  Similarity=0.205  Sum_probs=236.1

Q ss_pred             ccCCCCCCCcC---CCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCCh
Q psy14801          8 SNSARNSPFTP---TVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGN   84 (404)
Q Consensus         8 ~~~~~~~~~~~---~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN   84 (404)
                      ...||+..+++   ..+++|||+++++|++..|++||+|+|++|||||||||++.+++..+.++|.    ++||++|+||
T Consensus        28 ~~~~ry~~~~p~~~~~~~~TPL~~l~~l~~~~g~~i~~K~E~~~ptGSfKdRga~~~l~~a~~~g~----~~vv~aSsGN  103 (372)
T 1p5j_A           28 QQMGRGSEFMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGC----AHFVCSSAGN  103 (372)
T ss_dssp             ------------CCCSSCCCCEEEEHHHHHHHTSCEEEECGGGSGGGBTTHHHHHHHHHHHHHTTC----CEEEECCSSH
T ss_pred             CccccHHHhcccccCCCCCCCceEcHhhHHHhCCEEEEEEcCCCCCCChHHHHHHHHHHHHHHcCC----CEEEEeCCCH
Confidence            34678876664   5789999999999988778899999999999999999999999999988775    8999999999


Q ss_pred             HHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCCh
Q psy14801         85 TGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNP  164 (404)
Q Consensus        85 ~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~s  164 (404)
                      ||+|+|++|+++|++|+||||.+++..|+++++.+||+|+.+++  +|+   ++.+.+++++++.++.+|+++|.||. .
T Consensus       104 ~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~---~a~~~a~~l~~~~~~~~~v~~~~n~~-~  177 (372)
T 1p5j_A          104 AGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGE--LLD---EAFELAKALAKNNPGWVYIPPFDDPL-I  177 (372)
T ss_dssp             HHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCS--CHH---HHHHHHHHHHHHSTTEEECCSSCCHH-H
T ss_pred             HHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhcCCEEEEECC--CHH---HHHHHHHHHHHhcCCcEEeCCCCCHH-H
Confidence            99999999999999999999999999999999999999999986  343   45667888888755788899999997 4


Q ss_pred             hhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhC-CCcEEEEEcCCCCcccccC-CCCCCCCCCCcccccc
Q psy14801        165 LSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKC-PSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVE  242 (404)
Q Consensus       165 i~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~-~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~  242 (404)
                      +.|+.++++||++|+...||.+|+|+|+||+++|++.+++... |.+|||+|+|.++..+... ..+.........+.++
T Consensus       178 ~~G~~t~~~Ei~~ql~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~p~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~tia~  257 (372)
T 1p5j_A          178 WEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAK  257 (372)
T ss_dssp             HHHHTHHHHHHHHHCSSCCSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCCCCSCG
T ss_pred             HhhHHHHHHHHHHHcCCCCCEEEEecCCchHHHHHHHHHHHhCCCCceEEEEecCCChHHHHHHHcCCceecCCCceeec
Confidence            6788999999999998679999999999999999999999875 8899999999987643210 0010000111123344


Q ss_pred             CCCCcccc-ccc--CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHH----HHh----cCCCCeEEEE
Q psy14801        243 GIGYSFAA-TTL--DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQA----AKS----LRPDQRCVVI  311 (404)
Q Consensus       243 ~i~~~~~~-~~~--~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~----lk~----~~~~~~vv~v  311 (404)
                      +++....+ ..+  .....+..+.|+|+|+.++++.+++++|++++|+||.+++++.+.    +++    ..++.+||+|
T Consensus       258 gl~~~~~~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~epssa~alaa~~~~~~~~l~~~g~~~~~~~~Vv~i  337 (372)
T 1p5j_A          258 ALGVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLVVI  337 (372)
T ss_dssp             GGCCSSCCHHHHHHHHHSCEEEEEECHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTTHHHHHHHTTSSCSSCSCEEEE
T ss_pred             ccCCCCCCHHHHHHHhhcCCEEEEECHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHhhHHHHhhccccCCCCCeEEEE
Confidence            55443322 111  223456789999999999999999999999999999999998753    222    2467899999


Q ss_pred             ecCCC
Q psy14801        312 LADGV  316 (404)
Q Consensus       312 ~~~~~  316 (404)
                      .||++
T Consensus       338 ~tgg~  342 (372)
T 1p5j_A          338 VCGGS  342 (372)
T ss_dssp             CCBCS
T ss_pred             ECCCC
Confidence            99986

>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}

Probab=100.00  E-value=7.1e-49  Score=379.85  Aligned_cols=293  Identities=19%  Similarity=0.219  Sum_probs=242.6

Q ss_pred             CCcCCCCCCCCeeecCCCCCCCCCe--EEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHH
Q psy14801         15 PFTPTVPGKVPLLPQSKQGSILLPT--TDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMV   92 (404)
Q Consensus        15 ~~~~~~~g~TPl~~~~~l~~~~g~~--l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~   92 (404)
                      +.+.+.+|+|||+++++|++..|++  ||+|+|++|||||||||++.+++.++.++|.    ++||++|+||||+|+|++
T Consensus        22 ~~v~~~~g~TPL~~~~~l~~~~g~~~~i~~K~E~~~ptGS~KdR~a~~~l~~a~~~g~----~~vv~~SsGN~g~alA~~   97 (352)
T 2zsj_A           22 PIVTLYEGNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVEAGK----RAVICASTGNTSASAAAY   97 (352)
T ss_dssp             CCCCCCCCCCCEEECHHHHHHHTCCSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTC----CEEEECCSSHHHHHHHHH
T ss_pred             CceecccCCCCCeehHHHHHHhCCCceEEEEECCCCCCccHHHHHHHHHHHHHHhcCC----CEEEEeCCchHHHHHHHH
Confidence            4567889999999999998877888  9999999999999999999999999998887    799999999999999999


Q ss_pred             HHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhH
Q psy14801         93 AAIKGYKMVVVMPMK-MSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETT  171 (404)
Q Consensus        93 a~~~G~~~~iv~p~~-~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~  171 (404)
                      |+++|++|+||||.+ ++..|+++++.+||+|+.+++  +|+   ++.+.+++++++.+ .+|+++ .||. .+.||.++
T Consensus        98 a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~--~~~---~~~~~a~~l~~~~~-~~~~~~-~n~~-~~~g~~t~  169 (352)
T 2zsj_A           98 AARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQG--TFD---DALNIVRKIGENFP-VEIVNS-VNPY-RIEGQKTA  169 (352)
T ss_dssp             HHHHTCEEEEEEEGGGCCHHHHHHHHHTTCEEEEESS--CHH---HHHHHHHHHHHHSS-EEECST-TCTH-HHHHHTHH
T ss_pred             HHhcCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHH---HHHHHHHHHHHHcC-cEECCC-CCcc-hhhhHhHH
Confidence            999999999999997 999999999999999999986  343   44566888888764 667776 8886 46889999


Q ss_pred             HHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCC------CcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCC
Q psy14801        172 AEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCP------SCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIG  245 (404)
Q Consensus       172 a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~------~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~  245 (404)
                      ++||++|+...||.+|+|+|+||+++|++.+++...+      ..|+++|+|.++..+.......     ...+.+++++
T Consensus       170 ~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~~~~~g~~~~-----~~~t~a~gl~  244 (352)
T 2zsj_A          170 AFEICDTLGEAPDYHFIPVGNAGNITAYWKGFKIYYEEGKITKLPRMMGWQAEGAAPIVKGYPIK-----NPQTIATAIK  244 (352)
T ss_dssp             HHHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHTTSCSSCCEEEEEEETTBCHHHHTSCCS-----SCCCSCGGGC
T ss_pred             HHHHHHHcCCCCCEEEEeCCCcHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCcHHhcCCccC-----CCcchhHHhc
Confidence            9999999986799999999999999999999988643      5799999999975432211111     1112334443


Q ss_pred             Cccccc-c----cCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh--cCCCCeEEEEecCCCCC
Q psy14801        246 YSFAAT-T----LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--LRPDQRCVVILADGVRN  318 (404)
Q Consensus       246 ~~~~~~-~----~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~--~~~~~~vv~v~~~~~~~  318 (404)
                      ...... .    +.+.+.+..+.++|+|+.++++.+++++|++++|+||.+++++.+++++  ..++.+||++.||++.+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~~~~~~~~~vv~i~tg~~~k  324 (352)
T 2zsj_A          245 IGNPYSWKSALKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPASAASVAGLIKLVREGFFKGGEVVTCTLTGNGLK  324 (352)
T ss_dssp             CSSCTTHHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHTTCCCSCCEEEEEECBBGGG
T ss_pred             CCCCCcHHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCeeECchHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCCcc
Confidence            322110 0    1123457889999999999999999999999999999999999998874  45788999999999988


Q ss_pred             cccccc
Q psy14801        319 YLTKFI  324 (404)
Q Consensus       319 ~~~~~~  324 (404)
                      |.+..+
T Consensus       325 ~~~~~~  330 (352)
T 2zsj_A          325 DPDTAI  330 (352)
T ss_dssp             CHHHHH
T ss_pred             ChHHHH
Confidence            877654

>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*

Probab=100.00  E-value=8.6e-49  Score=379.94  Aligned_cols=300  Identities=19%  Similarity=0.222  Sum_probs=234.7

Q ss_pred             cccCCCCCCCcC---CCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCC
Q psy14801          7 YSNSARNSPFTP---TVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSG   83 (404)
Q Consensus         7 ~~~~~~~~~~~~---~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssG   83 (404)
                      ....||...+++   ..+++|||+++++|++.+|++||+|+|++|||||||||++.+++..+.++|.    ++||++|+|
T Consensus        27 ~~~l~r~~~~~~~~~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~----~~vv~aSsG  102 (364)
T 4h27_A           27 GQQMGRGSEFMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGC----AHFVCSSSG  102 (364)
T ss_dssp             --------------CCSSCCCCEEEEHHHHHHHTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTC----CEEEECCSS
T ss_pred             CcccchhHHhhhhcCCCCCcCCeEEChhhHHHhCCEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcCC----CEEEEeCCC
Confidence            455666666543   5678999999999988888999999999999999999999999999998887    799999999


Q ss_pred             hHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCC
Q psy14801         84 NTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNN  163 (404)
Q Consensus        84 N~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~  163 (404)
                      |||+|+|++|+++|++|+||||.+++..|+++++.+||+|+.++.  +|++   +.+.+++++++.++.+|+++|.||. 
T Consensus       103 N~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~--~~~~---a~~~a~~l~~~~~~~~~~~~~~np~-  176 (364)
T 4h27_A          103 NAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGE--LLDE---AFELAKALAKNNPGWVYIPPFDDPL-  176 (364)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECS--STTH---HHHHHHHHHHHSTTEEEECSSCSHH-
T ss_pred             hHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECC--CHHH---HHHHHHHHHHhCCCeEEeCCCCCHH-
Confidence            999999999999999999999999999999999999999999986  4654   4667888888876789999999996 


Q ss_pred             hhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhC-CCcEEEEEcCCCCcccccC-CCCCCCCCCCccccc
Q psy14801        164 PLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKC-PSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEV  241 (404)
Q Consensus       164 si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~-~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~  241 (404)
                      .+.|+.++++||++|+...||.+|+|+|+||+++|++.+++... |++++++|+|.++..+... ..+.........+.+
T Consensus       177 ~~~G~~t~~~Ei~~q~~~~~D~vvvpvG~GG~~aGi~~~~k~~~~p~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~tia  256 (364)
T 4h27_A          177 IWEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQEVGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVA  256 (364)
T ss_dssp             HHHHHTHHHHHHHHHCSSCCSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCCCCSC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHhCCCCCeEEEEecCCChHHHHHHHCCCcccCCCCCcHH
Confidence            56888999999999998779999999999999999999999876 7899999999998643210 001000001112334


Q ss_pred             cCCCCccccc-cc--CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHH-----HHHHh--cC-CCCeEEE
Q psy14801        242 EGIGYSFAAT-TL--DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVAC-----QAAKS--LR-PDQRCVV  310 (404)
Q Consensus       242 ~~i~~~~~~~-~~--~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~-----~~lk~--~~-~~~~vv~  310 (404)
                      ++++...... .+  ...+.+..+.|+|+|+.++++++++++|++++|++|.+++++.     ++.++  .. ++.+||+
T Consensus       257 ~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~eps~aaalaa~~~~k~~~l~~~g~~~~~~~~Vv~  336 (364)
T 4h27_A          257 KALGVKTVGAQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLVV  336 (364)
T ss_dssp             GGGCCSSCCHHHHHHHTTSCEEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHTTSSCSSCCEEEE
T ss_pred             HHhCCCCCcHHHHHHHHhcCCEEEEECHHHHHHHHHHHHHHCCCeEcccHHHHHHHHHhhhhHHhhhccCcCCCCCeEEE
Confidence            4444333221 11  1223455667999999999999999999999999999999986     22222  22 2578999


Q ss_pred             EecCCC
Q psy14801        311 ILADGV  316 (404)
Q Consensus       311 v~~~~~  316 (404)
                      |+||+.
T Consensus       337 v~tGG~  342 (364)
T 4h27_A          337 IVCGGS  342 (364)
T ss_dssp             EECBCS
T ss_pred             EECCCC
Confidence            999986

>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*

Probab=100.00  E-value=2.4e-49  Score=381.56  Aligned_cols=297  Identities=21%  Similarity=0.265  Sum_probs=236.2

Q ss_pred             cCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHc
Q psy14801         17 TPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIK   96 (404)
Q Consensus        17 ~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~   96 (404)
                      +...+++|||+++++|++..|++||+|+|++|||||||||++.+++..+.++|..++.++||++|+||||+|+|++|+++
T Consensus        19 i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~~vv~~SsGNhg~a~A~aa~~~   98 (346)
T 3l6b_A           19 IRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTHSSGNHGQALTYAAKLE   98 (346)
T ss_dssp             HGGGSCCCCEECCHHHHHHHTSEEEEEEGGGSGGGBTHHHHHHHHHHTTC-----CCCSCEEEECSSHHHHHHHHHHHHT
T ss_pred             HhcccCCCCeEEchhhHHHhCCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHhccccCCCEEEEeCCCHHHHHHHHHHHHh
Confidence            34567899999999998888899999999999999999999999999998876544557899999999999999999999


Q ss_pred             CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHH
Q psy14801         97 GYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEIL  176 (404)
Q Consensus        97 G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~  176 (404)
                      |++|+||||++++..|+++++.+||+|+.++.  ++   +++.+.+++++++. +.+|+++|.||. .+.||.++++||+
T Consensus        99 G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~--~~---~~~~~~a~~l~~~~-~~~~i~~~~np~-~~~g~~t~~~Ei~  171 (346)
T 3l6b_A           99 GIPAYIVVPQTAPDCKKLAIQAYGASIVYCEP--SD---ESRENVAKRVTEET-EGIMVHPNQEPA-VIAGQGTIALEVL  171 (346)
T ss_dssp             TCCEEEEEETTSCHHHHHHHHHTTCEEEEECS--SH---HHHHHHHHHHHHHH-TCEECCSSSCHH-HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CH---HHHHHHHHHHHHhc-CCEEECCCCChH-HHHHHHHHHHHHH
Confidence            99999999999999999999999999999986  33   34567788888776 568888999997 6789999999999


Q ss_pred             HHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC-CCCCCCC-CCCccccccCCCCcc--cccc
Q psy14801        177 RDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ-SLNDVPE-NQISYNEVEGIGYSF--AATT  252 (404)
Q Consensus       177 ~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~-~~~~~~~-~~~~~~~~~~i~~~~--~~~~  252 (404)
                      +|+. .||.+|+|+|+||+++|++.+++...|.+|+|+|+|.++..+... ..+.... .....+..+++....  ....
T Consensus       172 ~q~~-~~d~vvv~vG~GG~~aGi~~~~k~~~p~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~~tia~gl~~~~g~~~~~  250 (346)
T 3l6b_A          172 NQVP-LVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSSIGLNTWP  250 (346)
T ss_dssp             HHST-TCCEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGGCSCCCTTHHH
T ss_pred             HhCC-CCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEecCCCHHHHHHHHcCCccccCCCCCchhhhccCCCcHHHHH
Confidence            9996 799999999999999999999999999999999999987532110 0000000 001122233332111  1111


Q ss_pred             cCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHH-Hhc-CCCCeEEEEecCCCCCcccc
Q psy14801        253 LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAA-KSL-RPDQRCVVILADGVRNYLTK  322 (404)
Q Consensus       253 ~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~l-k~~-~~~~~vv~v~~~~~~~~~~~  322 (404)
                      +...+.+.++.|+|+|+.++++.+++++|++++|+||.+++++.+.. ++. .++.+|+++.||| ..++..
T Consensus       251 ~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~~~~~~~~~Vv~i~sGG-~~d~~~  321 (346)
T 3l6b_A          251 IIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVKNICIVLSGG-NVDLTS  321 (346)
T ss_dssp             HHHHHCCEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHSGGGGGSCTTCCEEEEEECBC-CCCTTG
T ss_pred             HHHHcCCeEEEECHHHHHHHHHHHHHHCCcEEcHHHHHHHHHHHHhhhhhccCCCCeEEEEcCCC-CCCHHH
Confidence            23456789999999999999999999999999999999999997643 332 4678899999975 555555

>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1

Probab=100.00  E-value=4.8e-49  Score=375.05  Aligned_cols=288  Identities=20%  Similarity=0.246  Sum_probs=233.9

Q ss_pred             CcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHH
Q psy14801         16 FTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAI   95 (404)
Q Consensus        16 ~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~   95 (404)
                      ++...+++|||+++++|++..|++||+|+|++|||||||||++.+++..+.  +.    .+||++|+||||+|+|++|++
T Consensus        13 ~i~~~~~~TPL~~~~~l~~~~g~~i~~K~E~~~ptgSfKdR~a~~~i~~l~--~~----~~vv~~ssGN~g~alA~~a~~   86 (311)
T 1ve5_A           13 RIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALE--NP----KGLLAVSSGNHAQGVAYAAQV   86 (311)
T ss_dssp             HHGGGSCCCCEEECHHHHHHTTSEEEEEEGGGSGGGBTHHHHHHHHHHHSS--SC----CCEEEECSSHHHHHHHHHHHH
T ss_pred             HHhccCCCCCceechhhHHhhCCeEEEEecCCCCcCCcHHHHHHHHHHHhc--CC----CeEEEECCCcHHHHHHHHHHH
Confidence            455667899999999988878889999999999999999999999998876  32    679999999999999999999


Q ss_pred             cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHH
Q psy14801         96 KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI  175 (404)
Q Consensus        96 ~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei  175 (404)
                      +|++|+||||.+++..|+++++.+||+|+.+++  +|+++   .+.+++++++. +.+|+++|.||. .+.||.++++||
T Consensus        87 ~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~---~~~a~~~~~~~-~~~~~~~~~n~~-~~~g~~t~~~Ei  159 (311)
T 1ve5_A           87 LGVKALVVMPEDASPYKKACARAYGAEVVDRGV--TAKNR---EEVARALQEET-GYALIHPFDDPL-VIAGQGTAGLEL  159 (311)
T ss_dssp             HTCCEEEECCCC--CCHHHHHHHTTCEEECTTC--CTTTH---HHHHHHHHHHH-CCEECCSSSSHH-HHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC--CHHHH---HHHHHHHHHhc-CcEecCCCCCcc-hhhhccHHHHHH
Confidence            999999999999999999999999999999986  46654   55678887765 578889999997 467999999999


Q ss_pred             HHHhC---CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC-CCCCCCCCC-CccccccCCCCcc--
Q psy14801        176 LRDTG---GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ-SLNDVPENQ-ISYNEVEGIGYSF--  248 (404)
Q Consensus       176 ~~q~~---~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~-~~~~~~~~~-~~~~~~~~i~~~~--  248 (404)
                      ++|+.   .+||.+|+|+|+|++++|++.+++...|..|+++|+|.++..+... ..+...... ......+++....  
T Consensus       160 ~~q~~~~~~~~d~vvvpvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~i~~gl~~~~~~  239 (311)
T 1ve5_A          160 LAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTLSLG  239 (311)
T ss_dssp             HHHHHHHTCCCSEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGGCCSSCC
T ss_pred             HHHHHhcCCCCCEEEEccCchHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCccccCCCCCeeeCcCCCCCcc
Confidence            99995   5799999999999999999999999999999999999987543110 000000000 1122333333221  


Q ss_pred             -cccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14801        249 -AATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRN  318 (404)
Q Consensus       249 -~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~  318 (404)
                       .+..+...+.+..+.++|+|+.++++++++++|++++|+||.+++++.++.++ . +.+||++.||+...
T Consensus       240 ~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~-~-~~~vv~i~tgg~~d  308 (311)
T 1ve5_A          240 ERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEPTGALPLAAVLEHGAR-L-PQTLALLLSGGNRD  308 (311)
T ss_dssp             TTTHHHHHHHCCEEEEECHHHHHHHHHHHHHHTCBCCCGGGGHHHHHHHHHGGG-S-CSEEEEEECBCCCC
T ss_pred             HHHHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCceEchHHHHHHHHHHhhhhc-c-CCEEEEEECCCCCC
Confidence             11122345678999999999999999999999999999999999999988776 5 88999999998643

>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A*

Probab=100.00  E-value=4.1e-49  Score=377.29  Aligned_cols=289  Identities=19%  Similarity=0.279  Sum_probs=236.6

Q ss_pred             CcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHH-hCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801         16 FTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAET-AGVLKPGYTIVEPSSGNTGIGLAMVAA   94 (404)
Q Consensus        16 ~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~-~g~~~~~~~vv~~ssGN~g~a~A~~a~   94 (404)
                      .+...+++|||+++++|++..|++||+|+|++|||||||||++.+++..+.+ ++.    ++||++|+||||+|+|++|+
T Consensus        19 ~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~KdRga~~~i~~~~~~~~~----~~vv~~ssGN~g~alA~~a~   94 (323)
T 1v71_A           19 RIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQRK----AGVLTFSSGNHAQAIALSAK   94 (323)
T ss_dssp             HHTTTSCCCCEECCHHHHHHHTSEEEEEEGGGSGGGBTHHHHHHHHHTTCCHHHHH----HCEEECCSSHHHHHHHHHHH
T ss_pred             HHhccCCCCCceEhHhhHHHhCCeEEEEecCCCCcCCHHHHHHHHHHHHHHHhcCC----CeEEEeCCCcHHHHHHHHHH
Confidence            3445679999999999888778899999999999999999999999976543 232    67999999999999999999


Q ss_pred             HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHH
Q psy14801         95 IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEE  174 (404)
Q Consensus        95 ~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~e  174 (404)
                      .+|++|+||||..++..|+++++.+||+|+.++.  +++++   .+.+++++++. +.+|+++|.||. .+.||.++++|
T Consensus        95 ~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~---~~~a~~l~~~~-~~~~i~~~~n~~-~~~g~~t~~~E  167 (323)
T 1v71_A           95 ILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDR--YKDDR---EKMAKEISERE-GLTIIPPYDHPH-VLAGQGTAAKE  167 (323)
T ss_dssp             HTTCCEEEEEETTCCHHHHHHHHHTTCEEEEECT--TTTCH---HHHHHHHHHHH-TCBCCCSSSSHH-HHHHHTHHHHH
T ss_pred             HcCCCEEEECCCCCcHHHHHHHHHcCCEEEEECC--CHHHH---HHHHHHHHHhc-CCEecCCCCCcc-hhhhHhHHHHH
Confidence            9999999999999999999999999999999987  35544   55678887765 467789999997 56899999999


Q ss_pred             HHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC-CCCCCCCCCCccccccCCCCccc---c
Q psy14801        175 ILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVEGIGYSFA---A  250 (404)
Q Consensus       175 i~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~---~  250 (404)
                      |++|+. .+|.+|+|+|+|||++|++.+++...|..|+|+|+|.++..+... ..+.........+..++++....   +
T Consensus       168 i~~q~~-~~d~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~  246 (323)
T 1v71_A          168 LFEEVG-PLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLGNYT  246 (323)
T ss_dssp             HHHHHC-CCSEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCHHHHHHHHTSCCCCCCCCCSCTTSCCSSCCHHH
T ss_pred             HHHhcC-CCCEEEEecCCcHHHHHHHHHHHHcCCCCEEEEEEeCCCchHHHHHHcCCceecCCCCcccccccCCCCcHHH
Confidence            999997 799999999999999999999999999999999999987543210 00100001111234455443221   1


Q ss_pred             cccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14801        251 TTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR  317 (404)
Q Consensus       251 ~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~  317 (404)
                      ..+.+.+.+..+.++|+|+.++++++++++|++++|++|.+++++.++.++. ++.+||+|+||+..
T Consensus       247 ~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~eps~a~alaa~~~~~~~~-~~~~vv~i~tGg~~  312 (323)
T 1v71_A          247 FSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVEPTGCLSFAAARAMKEKL-KNKRIGIIISGGNV  312 (323)
T ss_dssp             HHHHHHHCCEEEEECHHHHHHHHHHHHHHTCCCCCGGGGHHHHHHHHTGGGG-TTCEEEEEECBCCC
T ss_pred             HHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEcHHHHHHHHHHHHhHHhc-CCCeEEEEeCCCCC
Confidence            1223456789999999999999999999999999999999999999877665 78899999999853

>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}

Probab=100.00  E-value=5e-48  Score=369.04  Aligned_cols=287  Identities=20%  Similarity=0.222  Sum_probs=233.5

Q ss_pred             CCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCe
Q psy14801         20 VPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYK   99 (404)
Q Consensus        20 ~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~   99 (404)
                      ..++|||+++++|++..|++||+|+|++|||||||||++.+++..+.++|.    ++||++|+||||+|+|++|+++|++
T Consensus         4 ~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~----~~vv~~ssGN~g~alA~~a~~~G~~   79 (318)
T 2rkb_A            4 FHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAKKGC----RHLVCSSGGNAGIAAAYAARKLGIP   79 (318)
T ss_dssp             SSCCCCEEEEHHHHHHHTSCEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTC----CEEEECCCSHHHHHHHHHHHHHTCC
T ss_pred             CCccCCceehHhhHHHhCCeEEEEecCCCCCCCHHHHHHHHHHHHHHHcCC----CEEEEECCchHHHHHHHHHHHcCCC
Confidence            356999999999888778899999999999999999999999999998875    8999999999999999999999999


Q ss_pred             EEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHHHh
Q psy14801        100 MVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDT  179 (404)
Q Consensus       100 ~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~q~  179 (404)
                      |+||||..+++.|+++|+.+||+|+.+++  +|+   ++.+.+++++++. +.+|+++|.||. .+.||.++++||++|+
T Consensus        80 ~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~--~~~---~~~~~a~~~~~~~-~~~~~~~~~n~~-~~~g~~t~~~Ei~~q~  152 (318)
T 2rkb_A           80 ATIVLPESTSLQVVQRLQGEGAEVQLTGK--VWD---EANLRAQELAKRD-GWENVPPFDHPL-IWKGHASLVQELKAVL  152 (318)
T ss_dssp             EEEEECTTCCHHHHHHHHHTTCEEEECCS--SHH---HHHHHHHHHHHST-TEEECCSSCSHH-HHHHHHHHHHHHHHHS
T ss_pred             EEEEECCCCcHHHHHHHHhcCCEEEEECC--CHH---HHHHHHHHHHHhc-CCEEeCCCCChh-hccchhHHHHHHHHhc
Confidence            99999999999999999999999999986  343   4466788888764 678889999997 4678899999999999


Q ss_pred             CCCcCEEEEccCCChhHHHHHHHHHHhC-CCcEEEEEcCCCCcccccC-CCCCCCCCCCccccccCCCCccccc-cc--C
Q psy14801        180 GGKVDMIVLGCGTGGTASGIGRKIKEKC-PSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVEGIGYSFAAT-TL--D  254 (404)
Q Consensus       180 ~~~~~~vvv~~gsG~~~~Gi~la~~~~~-~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~-~~--~  254 (404)
                      ...||.+|+|+|+|++++|++.+++... |..|+++|+|.++..+... ..+.........+.+++++....+. .+  .
T Consensus       153 ~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~~vi~ve~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~  232 (318)
T 2rkb_A          153 RTPPGALVLAVGGGGLLAGVVAGLLEVGWQHVPIIAMETHGAHCFNAAITAGKLVTLPDITSVAKSLGAKTVAARALECM  232 (318)
T ss_dssp             SSCCSEEEEECSSSHHHHHHHHHHHHHTCTTSCEEEEEETTBCHHHHHHHHTSCCBCSCCCSSCGGGCCSBCCHHHHHHH
T ss_pred             CCCCCEEEEeeCCCcHHHHHHHHHHHhCCCCCEEEEEecCCChHHHHHHHcCCcccCCCCCceecccCCCCCCHHHHHHH
Confidence            8679999999999999999999999875 7899999999987543210 0010000111123344454433321 11  2


Q ss_pred             ccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHH----HHh----cCCCCeEEEEecCCCC
Q psy14801        255 RNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQA----AKS----LRPDQRCVVILADGVR  317 (404)
Q Consensus       255 ~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~----lk~----~~~~~~vv~v~~~~~~  317 (404)
                      ....+..+.++|+|+.++++++++++|++++|+||.+++++.+.    +++    ..++.+||+|+||++.
T Consensus       233 ~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~eps~a~a~aa~~~~~~~~~~~~g~~~~~~~~vv~i~tgg~~  303 (318)
T 2rkb_A          233 QVCKIHSEVVEDTEAVSAVQQLLDDERMLVEPACGAALAAIYSGLLRRLQAEGCLPPSLTSVVVIVCGGNN  303 (318)
T ss_dssp             HHSCEEEEEECHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHTSHHHHHHHTTSSCSSCSCEEEEECBCSS
T ss_pred             HHcCCEEEEECHHHHHHHHHHHHHhcCcEEchhHHHHHHHHHHhhHHHHhhccccCCCCCeEEEEECCCCC
Confidence            23456789999999999999999999999999999999998742    222    3467899999999874

>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A*

Probab=100.00  E-value=1.6e-48  Score=375.59  Aligned_cols=291  Identities=18%  Similarity=0.171  Sum_probs=239.3

Q ss_pred             CCCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCC--CCChhhHHHHHHHHHHHHhCCCCCCCEEEecC--CChHHHHH
Q psy14801         14 SPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNP--TGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS--SGNTGIGL   89 (404)
Q Consensus        14 ~~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~p--tGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~s--sGN~g~a~   89 (404)
                      .+++.+.+++|||+++++|++.+|++||+|+|++||  +||||+|++.+++..++++|.    ++||++|  +||||+|+
T Consensus        23 ~~ri~~~~~~TPL~~~~~l~~~~g~~v~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~G~----~~vv~~s~tsGN~g~al   98 (342)
T 4d9b_A           23 FPRLEFIGAPTPLEYLPRLSDYLGREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGA----DTLITAGAIQSNHVRQT   98 (342)
T ss_dssp             SCCCCSSCSCCCEEECHHHHHHHTSCEEEEEGGGCSSTTCCTHHHHHHHHHHHHHHTTC----CEEEEEEETTCHHHHHH
T ss_pred             CCcccccCCCCceeEhhhhHHhhCCEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHcCC----CEEEEcCCcccHHHHHH
Confidence            467788999999999999988788999999999999  999999999999999999997    7899996  79999999


Q ss_pred             HHHHHHcCCeEEEEecCCCCH--------HHHHHHHHcCCEEEEeCCCCCCCChhhHH-HHHHHHHHhCCCcEee-cCCC
Q psy14801         90 AMVAAIKGYKMVVVMPMKMSK--------EKVYTMKALGAKIIRTQNDKSYDHPEGMI-AGAHRIASQMKNAVVL-DQFR  159 (404)
Q Consensus        90 A~~a~~~G~~~~iv~p~~~~~--------~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~-~~a~~l~~~~~~~~~~-~e~~  159 (404)
                      |++|+++|++|+||||..++.        .|+++++.+||+|+.++..  + +.++.+ +.++++.++.+..|+. .++.
T Consensus        99 A~aa~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~--~-~~~~~~~~~a~~l~~~~~~~~~~p~~~~  175 (342)
T 4d9b_A           99 AAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDAL--T-DPDAQLQTLATRIEAQGFRPYVIPVGGS  175 (342)
T ss_dssp             HHHHHHHTCEEEEEEECTTCCCCHHHHHSHHHHHHHHTTCEEEECSCC--S-SHHHHHHHHHHHHHHTTCCEEECCGGGC
T ss_pred             HHHHHHhCCcEEEEEeCCCCCccccccccchHHHHHHCCCEEEEECch--h-hHHHHHHHHHHHHHhcCCceEEeCCCCC
Confidence            999999999999999998773        5999999999999999873  2 233333 4567777665444433 5566


Q ss_pred             CCCChhhHHhhHHHHHHHHhC--CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCc
Q psy14801        160 NPNNPLSHYETTAEEILRDTG--GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQIS  237 (404)
Q Consensus       160 np~~si~g~~~~a~ei~~q~~--~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~  237 (404)
                      ||.+ +.||.++++||++|+.  ..||.+|+|+|+|+|++|++.+++...|.+|||+|+|.++..+......     ...
T Consensus       176 n~~~-~~G~~t~~~EI~~q~~~~~~~d~vv~~vGtGGt~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~-----~~~  249 (342)
T 4d9b_A          176 SALG-AMGYVESALEIAQQCEEVVGLSSVVVASGSAGTHAGLAVGLEHLMPDVELIGVTVSRSVAEQKPKVI-----ALQ  249 (342)
T ss_dssp             SHHH-HHHHHHHHHHHHHHHTTTCCCCEEEEEESSSHHHHHHHHHHHHHCTTSEEEEEESSSCHHHHHHHHH-----HHH
T ss_pred             ChHH-HHHHHHHHHHHHHHHhccCCCCEEEEeCCCCHHHHHHHHHHHhhCCCCeEEEEEecCcHHHHHHHHH-----HHH
Confidence            7764 6799999999999997  4799999999999999999999999999999999999998643221110     001


Q ss_pred             cccccCCCC-cccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccc-hhhHHHHHHHHHHh--cCCCCeEEEEec
Q psy14801        238 YNEVEGIGY-SFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGS-SGTAMHVACQAAKS--LRPDQRCVVILA  313 (404)
Q Consensus       238 ~~~~~~i~~-~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~-tg~tlag~~~~lk~--~~~~~~vv~v~~  313 (404)
                      .+.+++++. ...+..+...+.+..+.++|+|+.++++++++++|++++|+ ||.+++|+.+++++  ..++.+||+|.|
T Consensus       250 ~t~a~gl~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epsYsa~a~aa~~~~~~~~~~~~~~~Vv~i~t  329 (342)
T 4d9b_A          250 QAIAGQLALTATADIHLWDDYFAPGYGVPNDAGMEAVKLLASLEGVLLDPVYTGKAMAGLIDGISQKRFNDDGPILFIHT  329 (342)
T ss_dssp             HHHHHHTTCCCCCCCEEECTTSTTCTTCCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHHTCSSSSSCEEEEEC
T ss_pred             HHHHHHcCCCCccceEEEecCCCceEecCCHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence            122334433 33444555667889999999999999999999999999998 99999999998875  457889999999


Q ss_pred             CCCC
Q psy14801        314 DGVR  317 (404)
Q Consensus       314 ~~~~  317 (404)
                      ||..
T Consensus       330 GGn~  333 (342)
T 4d9b_A          330 GGAP  333 (342)
T ss_dssp             CCTT
T ss_pred             CCcc
Confidence            9853

>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*

Probab=100.00  E-value=3.2e-48  Score=373.77  Aligned_cols=294  Identities=18%  Similarity=0.163  Sum_probs=240.5

Q ss_pred             CCCcCCCCCCCCeeecCCCCCCC-C-CeEEEEeCCCC-C--CCChhhHHHHHHHHHHHHhCCCCCCCEEEe--cCCChHH
Q psy14801         14 SPFTPTVPGKVPLLPQSKQGSIL-L-PTTDAKCEFMN-P--TGSLKDRAAWRMIEDAETAGVLKPGYTIVE--PSSGNTG   86 (404)
Q Consensus        14 ~~~~~~~~g~TPl~~~~~l~~~~-g-~~l~~K~E~~~-p--tGS~K~R~a~~~l~~a~~~g~~~~~~~vv~--~ssGN~g   86 (404)
                      .+.+.+.+++|||+++++|++.+ | ++||+|+|++| |  +||||||++.+++.++.++|.    ++||+  +|+||||
T Consensus         6 ~~~i~~~~~~TPL~~~~~l~~~~~g~~~i~~K~E~~n~p~~~Gs~K~R~a~~~l~~a~~~g~----~~vv~~G~ssGN~g   81 (341)
T 1f2d_A            6 FAKYPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDY----THLVSIGGRQSNQT   81 (341)
T ss_dssp             SCCCCCSSSSCCEEECHHHHHHTTTCSEEEEEEGGGSCSSTTCCHHHHHHTTTHHHHHHSCC----SEEEEEEETTCHHH
T ss_pred             CCCcccCCCCCcceeHHhHHHhhCCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHcCC----CEEEEcCCcchHHH
Confidence            45678889999999999998877 7 89999999999 9  999999999999999999887    78999  9999999


Q ss_pred             HHHHHHHHHcCCeEEEEecCCCC-----HH------HHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcE-e
Q psy14801         87 IGLAMVAAIKGYKMVVVMPMKMS-----KE------KVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAV-V  154 (404)
Q Consensus        87 ~a~A~~a~~~G~~~~iv~p~~~~-----~~------k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~-~  154 (404)
                      +|+|++|+.+|++|+||||..++     +.      |+++++.+||+|+.++.+.+.+..+...+.++++.++.+..+ +
T Consensus        82 ~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~i  161 (341)
T 1f2d_A           82 RMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPI  161 (341)
T ss_dssp             HHHHHHHHHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECCCCCCSSCCHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHhCCceEEEeccCCCccccccccccccccHHHHHhCCCEEEEeCCccchhHHHHHHHHHHHHHhcCCcEEEe
Confidence            99999999999999999999887     34      999999999999999874211111245667888888765344 4


Q ss_pred             ecC-CCCCCChhhHHhhHHHHHHHHhC---CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCC
Q psy14801        155 LDQ-FRNPNNPLSHYETTAEEILRDTG---GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLND  230 (404)
Q Consensus       155 ~~e-~~np~~si~g~~~~a~ei~~q~~---~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~  230 (404)
                      .++ |.||.+. .||.++++||++|+.   ..||++|+++|+|+|++|++.+++...|.+||++|+|.++..+.......
T Consensus       162 ~~~~~~np~~~-~G~~t~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~  240 (341)
T 1f2d_A          162 PAGCSEHKYGG-LGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQTLR  240 (341)
T ss_dssp             CGGGTTSTTTT-THHHHHHHHHHHHHHHHTCCCSEEEEEESSSHHHHHHHHHHGGGTCGGGEEEEECSSCHHHHHHHHHH
T ss_pred             CCCcCCCCccH-HHHHHHHHHHHHHHHhcCCCCCEEEEecCchHhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHH
Confidence            588 9999864 689999999999996   47999999999999999999999999999999999999986543211000


Q ss_pred             CCCCCCccccccCCCCc--ccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccc-hhhHHHHHHHHHHh--cCCC
Q psy14801        231 VPENQISYNEVEGIGYS--FAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGS-SGTAMHVACQAAKS--LRPD  305 (404)
Q Consensus       231 ~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~-tg~tlag~~~~lk~--~~~~  305 (404)
                           ...+...+++..  .....+...+.+.++.++|+|+.++++++++++|++++|+ ||.+++++.+++++  ..++
T Consensus       241 -----~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~egi~~ep~~sa~alaa~~~~~~~~~~~~~  315 (341)
T 1f2d_A          241 -----IANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLTDPVYEGKSMQGLIALIKEDYFKPG  315 (341)
T ss_dssp             -----HHHHHHHHHTCCCCCSCCCEECTTSTTBTTBCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCSCTT
T ss_pred             -----HHHHHHHHcCCCCCcCeEEEecCcccceEecCCHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHhCCCCCC
Confidence                 001112223211  1222345567788999999999999999999999999995 99999999998876  4578


Q ss_pred             CeEEEEecCCCC
Q psy14801        306 QRCVVILADGVR  317 (404)
Q Consensus       306 ~~vv~v~~~~~~  317 (404)
                      .+||+++||+..
T Consensus       316 ~~Vv~i~tGG~~  327 (341)
T 1f2d_A          316 ANVLYVHLGGAP  327 (341)
T ss_dssp             CEEEEEECCCGG
T ss_pred             CeEEEEECCchH
Confidence            899999999864

>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*

Probab=100.00  E-value=1.3e-47  Score=367.19  Aligned_cols=291  Identities=16%  Similarity=0.130  Sum_probs=241.1

Q ss_pred             CCCCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCC--CCChhhHHHHHHHHHHHHhCCCCCCCEEEec--CCChHHHH
Q psy14801         13 NSPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNP--TGSLKDRAAWRMIEDAETAGVLKPGYTIVEP--SSGNTGIG   88 (404)
Q Consensus        13 ~~~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~p--tGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~--ssGN~g~a   88 (404)
                      ..+.+.+.+++|||+++++|++..|++||+|+|++||  +||||||.+.+++..++++|.    ++||++  |+||||+|
T Consensus        11 ~~~~i~~~~~~TPL~~~~~l~~~~g~~i~~K~E~~~p~~~gs~K~R~~~~~i~~a~~~G~----~~vv~~G~ssGN~g~a   86 (325)
T 1j0a_A           11 KFPRVELIPWETPIQYLPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGA----DVVITVGAVHSNHAFV   86 (325)
T ss_dssp             TCCCCCCCCSCCCEEECHHHHHHHTSEEEEEEGGGSCSTTCSTHHHHHHHHHHHHHHTTC----SEEEEECCTTCHHHHH
T ss_pred             cCCCcccccCCCCceEhhhhhhhhCCEEEEEecccCCCCCCchHHHHHHHHHHHHHHcCC----CEEEEcCCcchHHHHH
Confidence            3456788999999999999887778899999999999  999999999999999999997    789996  99999999


Q ss_pred             HHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCCCCCCCCh--hhHHHHHHHHHHhCCCcE-eecCCCCCCCh
Q psy14801         89 LAMVAAIKGYKMVVVMPMKM-SKEKVYTMKALGAKIIRTQNDKSYDHP--EGMIAGAHRIASQMKNAV-VLDQFRNPNNP  164 (404)
Q Consensus        89 ~A~~a~~~G~~~~iv~p~~~-~~~k~~~l~~~Ga~v~~v~~~~~~~~~--~~~~~~a~~l~~~~~~~~-~~~e~~np~~s  164 (404)
                      +|++|+.+|++|+||||..+ +..|+++++.+||+|+.++.+  ++..  .+..+.+++++++.+..+ +..++.||.+ 
T Consensus        87 lA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~v~~~~~~--~~~~~~~~~~~~a~~l~~~~~~~~~~p~~~~n~~~-  163 (325)
T 1j0a_A           87 TGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAK--DSFELMKYAEEIAEELKREGRKPYVIPPGGASPIG-  163 (325)
T ss_dssp             HHHHHHHTTCEEEEEEESCCCSCHHHHHHHHTTCEEEEESCC--STTTHHHHHHHHHHHHTTSSCCEEEECGGGCSHHH-
T ss_pred             HHHHHHHhCCcEEEEECCCCCCCchHHHHHHCCCEEEEeCcc--hhhhhhHHHHHHHHHHHHcCCceEEEcCCCCCHHH-
Confidence            99999999999999999999 999999999999999999973  3322  345667888888765534 4467788863 


Q ss_pred             hhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCC
Q psy14801        165 LSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGI  244 (404)
Q Consensus       165 i~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i  244 (404)
                      ..||.++++||++|+..+||.+|+++|+|+|++|++.+++...|.+|||+|+|.++..+......    + .......++
T Consensus       164 ~~g~~t~~~Ei~~q~~~~~d~vv~~vGtGGt~~Gi~~~lk~~~~~~~vigVe~~~~~~~~~~~~~----t-~~~~~~~~~  238 (325)
T 1j0a_A          164 TLGYVRAVGEIATQSEVKFDSIVVAAGSGGTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTSKLD----N-LIKEAAELL  238 (325)
T ss_dssp             HTHHHHHHHHHHHHCCCCCSEEEEEESSSHHHHHHHHHHHHTTCCCEEEEEECSSCSSSHHHHHH----H-HHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhCCCCCEEEEeCCchHhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHH----H-HHHHHHHhc
Confidence            46789999999999976799999999999999999999999999999999999998654321100    0 001111122


Q ss_pred             C-CcccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccc-hhhHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14801        245 G-YSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGS-SGTAMHVACQAAKSLRPDQRCVVILADGV  316 (404)
Q Consensus       245 ~-~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~-tg~tlag~~~~lk~~~~~~~vv~v~~~~~  316 (404)
                      + ....+..+...+.+. +.++|+|+.++++++++++|+++||+ ||.+++++.+++++...+.+||+++||+.
T Consensus       239 g~~~~~~~~~~~~~~~~-~~v~d~e~~~a~~~l~~~~gi~~ep~ssa~a~aa~~~~~~~~~~~~~Vv~i~tGG~  311 (325)
T 1j0a_A          239 GVKVEVRPELYDYSFGE-YGKITGEVAQIIRKVGTREGIILDPVYTGKAFYGLVDLARKGELGEKILFIHTGGI  311 (325)
T ss_dssp             TCCCCSCCEEEECSTTS-TTCCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCSCSEEEEEECCCH
T ss_pred             CCCCCCCcEEecCcccC-CCCCCHHHHHHHHHHHHhhCcccccchHHHHHHHHHHHHHcCCCCCcEEEEECCCc
Confidence            2 123344556677888 99999999999999999999999995 99999999998887545889999999885

>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2

Probab=100.00  E-value=1.2e-47  Score=382.27  Aligned_cols=293  Identities=20%  Similarity=0.211  Sum_probs=240.5

Q ss_pred             CcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHH
Q psy14801         16 FTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAI   95 (404)
Q Consensus        16 ~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~   95 (404)
                      .+...+++|||+++++|++..|++||+|+|++|||||||||++.+++..+.+++. .  .+||++|+||||+|+|++|++
T Consensus        24 ~i~~~i~~TPL~~l~~Ls~~~g~~V~lK~E~lqPtgSfKdRgA~n~i~~l~~~~~-~--~gVV~aSsGNhg~avA~aa~~  100 (514)
T 1tdj_A           24 PVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQK-A--HGVITASAGNHAQGVAFSSAR  100 (514)
T ss_dssp             CGGGTCCCCCEEECHHHHHHTTSEEEEECGGGSTTSSSTHHHHHHHHHTTTTSSC-S--SSCEEEECSSSHHHHHHHHHH
T ss_pred             hHhcccCCCCcEEchhhHHhhCCeEEEEECCCCCcccHHHHHHHHHHHHHHHhcC-C--CEEEEECCcHHHHHHHHHHHH
Confidence            4555678999999999988889999999999999999999999999988764432 1  579999999999999999999


Q ss_pred             cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHH
Q psy14801         96 KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI  175 (404)
Q Consensus        96 ~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei  175 (404)
                      +|++|+||||.+++..|+++++.+||+|+.++.  +|+   ++.+.+++++++. +.+|+++|.||. .+.|+.++++||
T Consensus       101 lGi~~~IvmP~~~p~~Kv~~~r~~GAeVvlv~~--~~d---da~~~a~ela~e~-g~~~v~pfdnp~-~iaGqgTig~EI  173 (514)
T 1tdj_A          101 LGVKALIVMPTATADIKVDAVRGFGGEVLLHGA--NFD---EAKAKAIELSQQQ-GFTWVPPFDHPM-VIAGQGTLALEL  173 (514)
T ss_dssp             TTCCEEEECCSSCCHHHHHHHHHHSCEEECCCS--SHH---HHHHHHHHHHHHH-CCEECCSSCCHH-HHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHH---HHHHHHHHHHHhc-CCEeeCCCCCHH-HHHHHHHHHHHH
Confidence            999999999999999999999999999999875  454   4466788888775 578889999997 578999999999


Q ss_pred             HHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC-CCCCCCCCCCccccccCCCCccc---cc
Q psy14801        176 LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVEGIGYSFA---AT  251 (404)
Q Consensus       176 ~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~---~~  251 (404)
                      ++|+.. +|.+|||+|+||+++|++.+++...|.+|||+|+|.+++.+... ..+.........+.++++....+   +.
T Consensus       174 ~eQl~~-~D~vvvpvGgGGliaGia~~lk~~~P~~kVIgVep~~a~~l~~sl~~G~~~~l~~v~tiadGiav~~~g~~~~  252 (514)
T 1tdj_A          174 LQQDAH-LDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETF  252 (514)
T ss_dssp             HHHCTT-CCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTTCHHHHHHHHTSCCCCSCCCSSSSTTCCSSCCCHHH
T ss_pred             HHHCCC-CCEEEEccCcHHHHHHHHHHHHHhCCCCEEEEEeccCChhHHHHHhcCCeeecCCccccccchhcCCCChHHH
Confidence            999975 99999999999999999999999999999999999988643211 00000000111223344332221   12


Q ss_pred             ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCCCCc
Q psy14801        252 TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGVRNY  319 (404)
Q Consensus       252 ~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~~~~  319 (404)
                      .+...+.|..+.|+|.|+.++++.+++++|++++|+||.+++|+.+++++. .++.+||+|.||++.++
T Consensus       253 ~l~~~~vd~~v~Vsd~ei~~ai~~L~~~~givvEPsgA~alAal~~~~~~~~~~g~~VV~I~tGgn~d~  321 (514)
T 1tdj_A          253 RLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNIRGERLAHILSGANVNF  321 (514)
T ss_dssp             HHHTTSCCEEEEECHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHTCCSCEEEEECCCCCCCT
T ss_pred             HHHHHhCCeEEEECHHHHHHHHHHHHHHcCeEEcHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCCCCCH
Confidence            234567889999999999999999999999999999999999999887653 36889999999987654

>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A

Probab=100.00  E-value=3.6e-47  Score=376.89  Aligned_cols=296  Identities=18%  Similarity=0.194  Sum_probs=239.1

Q ss_pred             CCCCCCCCeeecCCCC----CCC----CCeEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHhCCCCCCC--------
Q psy14801         18 PTVPGKVPLLPQSKQG----SIL----LPTTDAKCEFMNP-TGSLKDRAAWRMIED-----AETAGVLKPGY--------   75 (404)
Q Consensus        18 ~~~~g~TPl~~~~~l~----~~~----g~~l~~K~E~~~p-tGS~K~R~a~~~l~~-----a~~~g~~~~~~--------   75 (404)
                      .+++++|||+++++|+    +.+    +.+||+|+|++|| |||||||++.+++..     ++++|.++||.        
T Consensus        73 ~~g~~~TPL~~~~~l~~~l~~~~g~~~~~~v~lK~E~~~p~tGSfK~Rga~~~i~~l~~~~a~~~G~l~~g~~~~~l~~~  152 (442)
T 3ss7_X           73 TGGIIESELVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISGSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSP  152 (442)
T ss_dssp             GTTCCCCCEEECHHHHHHHHHHHTCCCCSEEEEEEGGGCTTTSBTHHHHHHHHHHHHHHHHHHHTTSCCTTSCGGGGGSH
T ss_pred             cCCCCCCCcEEhHhhhhHHHHhhCCCcCCeEEEeecCCCCCCCCcHHHHHHHHHHHHhHHHHHHcCCCCCCcchhhhhhh
Confidence            3578899999999876    544    4799999999999 999999999999875     78889888876        


Q ss_pred             ---------EEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHH
Q psy14801         76 ---------TIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIA  146 (404)
Q Consensus        76 ---------~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~  146 (404)
                               +||++|+||||+|+|++|+++|++|+||||.+++..|+++++.+||+|+.+++  +|   +++++.+++++
T Consensus       153 ~~r~~~~~~~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v~~--~~---~~a~~~a~~~a  227 (442)
T 3ss7_X          153 EFKQFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQ--DY---GVAVEEGRKAA  227 (442)
T ss_dssp             HHHHHHHTSEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEESS--CH---HHHHHHHHHHH
T ss_pred             hhhhhccCcEEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCCHHHHHHHHHCCCEEEEECC--CH---HHHHHHHHHHH
Confidence                     89999999999999999999999999999999999999999999999999986  34   34567788888


Q ss_pred             HhCCCcEeecCCCCCCChhhHHhhHHHHHHHHhCC--------CcCEEEEccCCChhHHHHHHHHHHh-CCCcEEEEEcC
Q psy14801        147 SQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGG--------KVDMIVLGCGTGGTASGIGRKIKEK-CPSCKLVGADP  217 (404)
Q Consensus       147 ~~~~~~~~~~e~~np~~si~g~~~~a~ei~~q~~~--------~~~~vvv~~gsG~~~~Gi~la~~~~-~~~~~vi~V~p  217 (404)
                      ++.++.+++++ .||.+.+.||.++|+||++|+..        .||.+|+|+|+||+++|++.+++.. .|.+++|+|+|
T Consensus       228 ~~~~~~~~i~~-~n~~~~~~G~~t~g~Ei~eQl~~~g~~vD~~~Pd~VvvpvG~GG~~aGi~~~lk~~~~~~v~vigVep  306 (442)
T 3ss7_X          228 QSDPNCFFIDD-ENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEP  306 (442)
T ss_dssp             HTCTTEEECCT-TTCHHHHHHHHHHHHHHHHHHHHHTCCCBTTBCEEEEEECSSSHHHHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             HhCCCceeCCC-CChHHHHHHHHHHHHHHHHHHHhhcCcccccCCCEEEEEeCCchHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            87766777777 56666789999999999999852        3679999999999999999999986 78999999999


Q ss_pred             CCCcccccC-CCCCC-----CC-CCCccccccCCCCcccc---cccCccccCcEEecChHHHHHHHHHHHHhcCcEeccc
Q psy14801        218 FGSILAQPQ-SLNDV-----PE-NQISYNEVEGIGYSFAA---TTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGS  287 (404)
Q Consensus       218 ~~~~~~~~~-~~~~~-----~~-~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~  287 (404)
                      .+++.+... ..+..     .. .....+.+++++.....   ..+.+.+.+.++.|+|.|+.++++.+++++|++++|+
T Consensus       307 ~~~~~~~~~~~~G~~~~~~v~~~g~~~~TiAdgl~v~~~~~~~~~~~~~~~d~~~~Vsd~e~~~a~~~L~~~eGi~~eps  386 (442)
T 3ss7_X          307 THSPCMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGFYTLSDQTMYDMLGWLAQEEGIRLEPS  386 (442)
T ss_dssp             TTCCHHHHHHHHSCGGGCBGGGGTCCCCCSCGGGCCSBCCSSHHHHHGGGCCEEEEECHHHHHHHHHHHHHHHCCCCCGG
T ss_pred             CCchHHHHHHhcCCCceeeeccCCCchhhHHhhcCCCCCchhHHHHHHhhCCeEEEECHHHHHHHHHHHHHHCCCeEcHH
Confidence            998643110 00000     00 00122334444332211   1122467789999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHh--------cCC----CCeEEEEecCCCCCc
Q psy14801        288 SGTAMHVACQAAKS--------LRP----DQRCVVILADGVRNY  319 (404)
Q Consensus       288 tg~tlag~~~~lk~--------~~~----~~~vv~v~~~~~~~~  319 (404)
                      ||.+++|+.+++++        +.+    +.+||+++||++.+.
T Consensus       387 saaalAa~~~l~~~~~~~~~~~l~~~~~~~~~vv~i~TGG~~~~  430 (442)
T 3ss7_X          387 ALAGMAGPQRVCASVSYQQMHGFSAEQLRNTTHLVWATGGGMVP  430 (442)
T ss_dssp             GGGGGGHHHHHHHCHHHHHHHTCCHHHHHTCEEEEEECBCTTCC
T ss_pred             HHHHHHHHHHHHhchhhHHhcCCCcccCCCCeEEEEECCCCCCC
Confidence            99999999988762        122    789999999998653

>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum}

Probab=100.00  E-value=1.2e-47  Score=372.68  Aligned_cols=291  Identities=17%  Similarity=0.212  Sum_probs=237.9

Q ss_pred             CcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHh-CCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801         16 FTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETA-GVLKPGYTIVEPSSGNTGIGLAMVAA   94 (404)
Q Consensus        16 ~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~-g~~~~~~~vv~~ssGN~g~a~A~~a~   94 (404)
                      .+...+++|||+++++|++.+|++||+|+|++|||||||||++.+++..+.++ +.    .+||++|+||||+|+|++|+
T Consensus        53 ~i~~~i~~TPL~~l~~l~~~~g~~i~~K~E~~~ptgSfKdRga~~~i~~l~~~~~~----~~vv~assGN~g~a~A~aa~  128 (366)
T 3iau_A           53 PVYDVAIESPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNLSREELD----KGVITASAGNHAQGVALAGQ  128 (366)
T ss_dssp             CGGGTCCCCCEEECHHHHHHHTSEEEEEEGGGSTTSBTTHHHHHHHHHTSCHHHHH----HCEEEECSSHHHHHHHHHHH
T ss_pred             HHhhhcCCCCcEEhhhhhHhhCCEEEEEecCCCCCcchHHHHHHHHHHHHHHhCCC----CEEEEeCCCHHHHHHHHHHH
Confidence            34567799999999999888889999999999999999999999999876432 22    57999999999999999999


Q ss_pred             HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHH
Q psy14801         95 IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEE  174 (404)
Q Consensus        95 ~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~e  174 (404)
                      ++|++|+||||..++..|+++++.+||+|+.+++  +|+   ++++.+++++++. +.+|+++|.||. .+.||.++++|
T Consensus       129 ~~G~~~~iv~P~~~~~~k~~~~~~~GA~V~~v~~--~~~---~~~~~a~~~~~~~-~~~~i~~~~n~~-~i~g~~t~~~E  201 (366)
T 3iau_A          129 RLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGK--TFD---EAQTHALELSEKD-GLKYIPPFDDPG-VIKGQGTIGTE  201 (366)
T ss_dssp             HTTCCEEEEECTTCCHHHHHHHHHTTCEEEECCS--SHH---HHHHHHHHHHHHH-TCEECCSSSSHH-HHHHHHHHHHH
T ss_pred             HhCCceEEEeCCCCCHHHHHHHHHCCCeEEEECc--CHH---HHHHHHHHHHHhc-CCEecCCCCChH-HHHHHHHHHHH
Confidence            9999999999999999999999999999999985  454   4566788888775 678889999997 46899999999


Q ss_pred             HHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC-CCCCCCCCCCccccccCCCCccc---c
Q psy14801        175 ILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVEGIGYSFA---A  250 (404)
Q Consensus       175 i~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~---~  250 (404)
                      |++|+ ..||.+|+|+|+||+++|++.+++...|.+|+++|+|.++..+... ..+.........+..++++....   +
T Consensus       202 i~~q~-~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vigVe~~~~~~l~~~~~~g~~~~~~~~~tia~gl~~~~~~~~~  280 (366)
T 3iau_A          202 INRQL-KDIHAVFIPVGGGGLIAGVATFFKQIAPNTKIIGVEPYGAASMTLSLHEGHRVKLSNVDTFADGVAVALVGEYT  280 (366)
T ss_dssp             HHHHC-CSEEEEEEECSSSHHHHHHHHHHHHHSTTSEEEEEEEGGGCHHHHHHHHTSCCEESCCCCSSGGGCCSSCCHHH
T ss_pred             HHHhc-CCCCEEEEccCchHHHHHHHHHHHHhCCCCeEEEEeecCChHHHHHHHcCCCCcCCCccchhhhhcCCCCcHHH
Confidence            99999 4799999999999999999999999999999999999988543210 00100000111222334332211   2


Q ss_pred             cccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcC-CCCeEEEEecCCCCC
Q psy14801        251 TTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLR-PDQRCVVILADGVRN  318 (404)
Q Consensus       251 ~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~-~~~~vv~v~~~~~~~  318 (404)
                      ..+...+.+..+.++|+|+.++++.+++++|++++|+||.+++|+.+++++.. ++.+||+++||++..
T Consensus       281 ~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~ep~sa~alaa~~~~~~~~~~~g~~Vv~i~tGgn~d  349 (366)
T 3iau_A          281 FAKCQELIDGMVLVANDGISAAIKDVYDEGRNILETSGAVAIAGAAAYCEFYKIKNENIVAIASGANMD  349 (366)
T ss_dssp             HHHHHHHCCEEEEECHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHTTCCSCEEEEEECBCCCC
T ss_pred             HHHHHhcCCCceeECHHHHHHHHHHHHHHcCcEEcHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC
Confidence            22335567889999999999999999999999999999999999999887643 578999999998653

>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1

Probab=100.00  E-value=2.6e-46  Score=363.68  Aligned_cols=276  Identities=24%  Similarity=0.290  Sum_probs=231.8

Q ss_pred             CCCCeeecCCCCCCCCCeEEEEeCCCCC-CCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeE
Q psy14801         22 GKVPLLPQSKQGSILLPTTDAKCEFMNP-TGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKM  100 (404)
Q Consensus        22 g~TPl~~~~~l~~~~g~~l~~K~E~~~p-tGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~  100 (404)
                      .+|||+++++|++. |++||+|+|++|| |||||||++.+++..+.  +.+++|++||++|+||||+|+|++|+++|++|
T Consensus        95 ~~TPL~~l~~Ls~~-g~~IylK~E~lnp~tGS~K~R~a~~~i~~l~--~a~~~g~~Iv~assGNhG~AlA~aaa~~Gl~~  171 (389)
T 1wkv_A           95 KPTPLVRSRLQLPN-GVRVWLKLEWYNPFSLSVKDRPAVEIISRLS--RRVEKGSLVADATSSNFGVALSAVARLYGYRA  171 (389)
T ss_dssp             CSCCEEECCCCCST-TEEEEEEEGGGSTTTSBTTHHHHHHHHHHHT--TTSCTTCEEEEECCHHHHHHHHHHHHHTTCEE
T ss_pred             CCCCeEEccccccC-CCeEEEEEcCCCCCcCChHHHHHHHHHHHHH--HHHhcCCEEEEECCcHHHHHHHHHHHHcCCeE
Confidence            46999999999876 8899999999999 99999999999998854  44456689999999999999999999999999


Q ss_pred             EEEecCCCCHHHHHHHHHcCCEEE-EeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHHHh
Q psy14801        101 VVVMPMKMSKEKVYTMKALGAKII-RTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDT  179 (404)
Q Consensus       101 ~iv~p~~~~~~k~~~l~~~Ga~v~-~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~q~  179 (404)
                      +||||..++..|+.+|+.+||+|+ .++. +++++   +++.+.+++++. +.+|+++|.||.+.+.|+.+++.||++|+
T Consensus       172 ~ivmp~~~~~~k~~~~~~~GAeVv~~v~~-~~~~d---a~~~a~~~~~~~-g~~~~~p~~N~~~~~~~~~t~g~Ei~~Q~  246 (389)
T 1wkv_A          172 RVYLPGAAEEFGKLLPRLLGAQVIVDPEA-PSTVH---LLPRVMKDSKNE-GFVHVNQFYNDANFEAHMRGTAREIFVQS  246 (389)
T ss_dssp             EEEEETTSCHHHHHHHHHTTCEEEEETTC-SSSGG---GHHHHHHHHHHH-CCEECCTTTCHHHHHHHHHTHHHHHHHHH
T ss_pred             EEEECCCCCHHHHHHHHHcCCEEEEEcCC-CCHHH---HHHHHHHHHHcc-CcEecCcCCChHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999 7773 24554   356677777664 57889999999888999999999999998


Q ss_pred             C---CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccCcc
Q psy14801        180 G---GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRN  256 (404)
Q Consensus       180 ~---~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  256 (404)
                      .   ..||.+|+|+|+|+|++|++.+++...|.+|+|+|+|.++.....  +.          ...+ +    +..+...
T Consensus       247 ~~~g~~~D~vv~~vG~GG~~~Gi~~~~k~~~p~vrvigVe~~~~~~l~G--i~----------~i~~-~----~~~~~~~  309 (389)
T 1wkv_A          247 RRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPG--IR----------RVET-G----MLWINML  309 (389)
T ss_dssp             HHTTCCEEEEEECCSSSHHHHHHHHHHHHHCTTCEEEEEEECTTCCCTT--CC----------CGGG-C----CSHHHHS
T ss_pred             HhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEecCCCCcccc--cc----------ccCC-c----chhhhhh
Confidence            5   369999999999999999999999999999999999998653211  00          0111 0    1111223


Q ss_pred             ccC-cEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh--cCCCCeEEEEecCCCCCccccc
Q psy14801        257 VID-QWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLTKF  323 (404)
Q Consensus       257 ~~~-~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~--~~~~~~vv~v~~~~~~~~~~~~  323 (404)
                      ..| .++.++|+|+.++++.+++++|++++|+||.+++++.+++++  ..++ ++|++.||++.+|++..
T Consensus       310 ~~dg~~~~Vsd~ea~~a~~~l~~~eGi~~~pssa~alaa~~~l~~~g~~~~~-~vVviltg~G~k~~~~~  378 (389)
T 1wkv_A          310 DISYTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPG-DYVVVVPDTGFKYLSLV  378 (389)
T ss_dssp             CCCCEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHTTCSCSE-EEEEEECBBGGGCHHHH
T ss_pred             eeccEEEEECHHHHHHHHHHHHHHcCCeEChHHHHHHHHHHHHHHhcCCCCC-CEEEEEcCCCccCHHHH
Confidence            446 889999999999999999999999999999999999998876  4444 57889999999998764

>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*

Probab=100.00  E-value=1.4e-46  Score=362.19  Aligned_cols=290  Identities=21%  Similarity=0.220  Sum_probs=231.5

Q ss_pred             CCCcCCCCCCCCeeecCCCCCCC-C-CeEEEEeCCCC-C--CCChhhHHHHHHHHHHHHhCCCCCCCEEEe--cCCChHH
Q psy14801         14 SPFTPTVPGKVPLLPQSKQGSIL-L-PTTDAKCEFMN-P--TGSLKDRAAWRMIEDAETAGVLKPGYTIVE--PSSGNTG   86 (404)
Q Consensus        14 ~~~~~~~~g~TPl~~~~~l~~~~-g-~~l~~K~E~~~-p--tGS~K~R~a~~~l~~a~~~g~~~~~~~vv~--~ssGN~g   86 (404)
                      .+.+.+.+++|||+++++|++.+ | .+||+|+|++| |  |||||||++.+++.++.++|.    ++||+  +|+||||
T Consensus         6 ~~~i~~~~~~TPL~~~~~l~~~~~g~~~i~~K~E~~n~p~~~gs~K~R~a~~~l~~a~~~g~----~~vv~~GassGN~g   81 (338)
T 1tzj_A            6 FPRYPLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGC----DTLVSIGGIQSNQT   81 (338)
T ss_dssp             SCCCCCSSSSCCEEECHHHHHHTTSSSEEEEEEGGGSCSSTTCCHHHHHHHTTHHHHHHTTC----CEEEEEEETTCHHH
T ss_pred             CCccccCCCCCccEEHHHHHHhhCCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHcCC----CEEEEcCCchhHHH
Confidence            35688899999999999988777 7 79999999997 8  999999999999999998887    68998  8999999


Q ss_pred             HHHHHHHHHcCCeEEEEecCCCCHH--------HHHHHHHcCCEEEEeCCCCCCCCh--hhHHHHHHHHHHhCCCcEee-
Q psy14801         87 IGLAMVAAIKGYKMVVVMPMKMSKE--------KVYTMKALGAKIIRTQNDKSYDHP--EGMIAGAHRIASQMKNAVVL-  155 (404)
Q Consensus        87 ~a~A~~a~~~G~~~~iv~p~~~~~~--------k~~~l~~~Ga~v~~v~~~~~~~~~--~~~~~~a~~l~~~~~~~~~~-  155 (404)
                      +|+|++|+.+|++|+||||..++..        |+++++.+||+|+.++.+  +++.  ....+.+++++++.+..++. 
T Consensus        82 ~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~~~~~~a~~l~~~~~~~~~~p  159 (338)
T 1tzj_A           82 RQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDG--FDIGFRRSWEDALESVRAAGGKPYAIP  159 (338)
T ss_dssp             HHHHHHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEEECCC---------CHHHHHHHHHHHTTCCEEECC
T ss_pred             HHHHHHHHHhCCceEEEecCCCCccccccccCccHHHHHhCCCEEEEeCCc--chhhHHHHHHHHHHHHHhcCCceEEeC
Confidence            9999999999999999999987764        999999999999999863  4332  22456678888776544443 


Q ss_pred             cC-CCCCCChhhHHhhHHHHHHHHhC---CCcCEEEEccCCChhHHHHHHHHHHh-CCCcEEEEEcCCCCcccccCCCCC
Q psy14801        156 DQ-FRNPNNPLSHYETTAEEILRDTG---GKVDMIVLGCGTGGTASGIGRKIKEK-CPSCKLVGADPFGSILAQPQSLND  230 (404)
Q Consensus       156 ~e-~~np~~si~g~~~~a~ei~~q~~---~~~~~vvv~~gsG~~~~Gi~la~~~~-~~~~~vi~V~p~~~~~~~~~~~~~  230 (404)
                      .+ |.||.+ +.||.++++||++|+.   .+||.+|+|+|+|+|++|++.+++.. .|. |||+|+|.++..+.......
T Consensus       160 ~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~~~d~vv~~vG~GGt~~Gi~~~~k~~g~~~-~vigve~~~~~~~~~~~~~~  237 (338)
T 1tzj_A          160 AGCSDHPLG-GLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRAD-RVIGVDASAKPAQTREQITR  237 (338)
T ss_dssp             GGGTSSTTT-TTHHHHHHHHHHHHHHHHTSCCSEEEEEESSSHHHHHHHHHHHTTTCGG-GEEEEECSSCHHHHHHHHHH
T ss_pred             CCcCCCccc-HHHHHHHHHHHHHHHHhcCCCCCEEEEecCCcHHHHHHHHHHHhhCCCC-eEEEEEccCchHHHHHHHHH
Confidence            66 999985 5678999999999996   46999999999999999999999987 788 99999999986432211000


Q ss_pred             CCCCCCcccccc--CCCCcc--cccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccc-hhhHHHHHHHHHHh--cC
Q psy14801        231 VPENQISYNEVE--GIGYSF--AATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGS-SGTAMHVACQAAKS--LR  303 (404)
Q Consensus       231 ~~~~~~~~~~~~--~i~~~~--~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~-tg~tlag~~~~lk~--~~  303 (404)
                           .......  +++...  ....+.+.+.+..+.++|+|+.++++++++++|++++|+ ||.+++++.+++++  ..
T Consensus       238 -----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~ep~ysa~alaa~~~~~~~~~~~  312 (338)
T 1tzj_A          238 -----IARQTAEKVGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEMVRNGEFP  312 (338)
T ss_dssp             -----HHHHHHHHHTCSSCCCGGGCEEECTTSCSBTTBCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCSC
T ss_pred             -----HHHHHHHHcCCCCCCCcccEEEecCcccceeecCCHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCCC
Confidence                 0001111  111111  112233456677899999999999999999999999996 99999999998876  34


Q ss_pred             CCCeEEEEecCCC
Q psy14801        304 PDQRCVVILADGV  316 (404)
Q Consensus       304 ~~~~vv~v~~~~~  316 (404)
                      ++.+||+|+|++.
T Consensus       313 ~~~~Vv~i~tGG~  325 (338)
T 1tzj_A          313 EGSRVLYAHLGGV  325 (338)
T ss_dssp             TTCEEEEEECCCG
T ss_pred             CCCeEEEEECCCc
Confidence            7889999999764

>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*

Probab=100.00  E-value=7.6e-46  Score=363.84  Aligned_cols=289  Identities=20%  Similarity=0.207  Sum_probs=229.3

Q ss_pred             CCCCCCeeecCCCCCCCC-CeEEEEeCCCC-CCCChhhHHHHHHHHHHH--HhCC----C--------CCCC-EEEecCC
Q psy14801         20 VPGKVPLLPQSKQGSILL-PTTDAKCEFMN-PTGSLKDRAAWRMIEDAE--TAGV----L--------KPGY-TIVEPSS   82 (404)
Q Consensus        20 ~~g~TPl~~~~~l~~~~g-~~l~~K~E~~~-ptGS~K~R~a~~~l~~a~--~~g~----~--------~~~~-~vv~~ss   82 (404)
                      ..++|||+++++|++.+| .+||+|+|++| ||||||||++.+++.++.  +.|.    +        .+.+ +||++|+
T Consensus        41 ~~~~TPL~~~~~l~~~~g~~~i~~K~E~~~~ptgSfK~Rga~~~i~~~~~~~~G~~~~~l~~e~l~~~~~~~~~vv~aSs  120 (398)
T 4d9i_A           41 GYRPTPLCALDDLANLFGVKKILVKDESKRFGLNAFXMLGGAYAIAQLLCEKYHLDIETLSFEHLKNAIGEKMTFATTTD  120 (398)
T ss_dssp             TCCCCCEEECHHHHHHHTSSEEEEEEGGGSTTTTBSTHHHHHHHHHHHHHHHHTCCGGGCCHHHHHHCCSCCCEEEEECS
T ss_pred             CCCCCCceehHHHHHHhCCCcEEEEECCCCCCCCcchhhhhHHHHHHHHHHhhcccccccchhhhhhhccCCCEEEEECC
Confidence            357999999999988888 49999999999 999999999999999884  3331    0        2336 8999999


Q ss_pred             ChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecC-----
Q psy14801         83 GNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQ-----  157 (404)
Q Consensus        83 GN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e-----  157 (404)
                      ||||+|+|++|+.+|++|+||||.+++..|+++++.+||+|+.+++  +|+   ++++.+++++++. +.+|+++     
T Consensus       121 GNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~--~~~---~a~~~a~~~~~~~-g~~~v~~~~~~g  194 (398)
T 4d9i_A          121 GNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDM--NYD---DTVRLTMQHAQQH-GWEVVQDTAWEG  194 (398)
T ss_dssp             SHHHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHTTTCEEEECSS--CHH---HHHHHHHHHHHHH-TCEECCSSCBTT
T ss_pred             CHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCEEEEECC--CHH---HHHHHHHHHHHHc-CCEEecCcccCC
Confidence            9999999999999999999999999999999999999999999986  443   4566788888776 5677775     


Q ss_pred             CC-CCCChhhHHhhHHHHHHHHhCCC---cCEEEEccCCChhHHHHHHHHHHh--CCCcEEEEEcCCCCcccccCC-CCC
Q psy14801        158 FR-NPNNPLSHYETTAEEILRDTGGK---VDMIVLGCGTGGTASGIGRKIKEK--CPSCKLVGADPFGSILAQPQS-LND  230 (404)
Q Consensus       158 ~~-np~~si~g~~~~a~ei~~q~~~~---~~~vvv~~gsG~~~~Gi~la~~~~--~~~~~vi~V~p~~~~~~~~~~-~~~  230 (404)
                      |. ||.+.+.||.++++||++|+...   ||.+|+++|+||+++|++.+++..  .+..++|+|+|.++..+.... .+.
T Consensus       195 ~~~~~~~~~~G~~t~~~Ei~~q~~~~g~~~d~vvvpvG~GG~~aGi~~~~k~~~~~~~~~vigVep~~~~~~~~s~~~g~  274 (398)
T 4d9i_A          195 YTKIPTWIMQGYATLADEAVEQMREMGVTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGD  274 (398)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECSSSHHHHHHHHHHHHHHCTTSCEEEEEEETTSCHHHHHHHHTS
T ss_pred             cCCCCchhhhhHHHHHHHHHHHhhhcCCCCCEEEEecCccHHHHHHHHHHHHhcCCCCCEEEEEEeCCCchHHHHHHcCC
Confidence            54 45567899999999999998744   999999999999999999999776  467899999999986542110 011


Q ss_pred             CCCCC-CccccccCCCCcccccc----cCccccCcEEecChHHHHHHHHHHHHhcC----cEeccchhhHHHHHHHHH--
Q psy14801        231 VPENQ-ISYNEVEGIGYSFAATT----LDRNVIDQWGKCGDKDTFLMARRLIKSEG----LLVGGSSGTAMHVACQAA--  299 (404)
Q Consensus       231 ~~~~~-~~~~~~~~i~~~~~~~~----~~~~~~~~~~~v~d~e~~~~~~~l~~~~g----i~~~~~tg~tlag~~~~l--  299 (404)
                      ..... ...+...+++... +..    +...+.+.++.|+|+|+.++++.+++++|    ++++|+||.+++|+.+++  
T Consensus       275 ~~~~~~~~~tia~gl~~~~-p~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~eG~~~~i~~epssa~alaa~~~~~~~  353 (398)
T 4d9i_A          275 IVNVGGDMATIMAGLACGE-PNPLGWEILRNCATQFISCQDSVAALGMRVLGNPYGNDPRIISGESGAVGLGVLAAVHYH  353 (398)
T ss_dssp             CCCC------CCTTCCCSS-CCHHHHHHHHHHCCEEEEECTHHHHHHHHHHHSCSTTCCCCCCCHHHHHHHHHHHHHHHS
T ss_pred             ceecCCCCCceeccccCCC-CCHHHHHHHHHcCCeEEEECHHHHHHHHHHHHHhhCCCCcEEECchHHHHHHHHHHhhhh
Confidence            00000 1123334443222 222    22457789999999999999999999989    999999999999998874  


Q ss_pred             -------Hh--cCCCCeEEEEecCC
Q psy14801        300 -------KS--LRPDQRCVVILADG  315 (404)
Q Consensus       300 -------k~--~~~~~~vv~v~~~~  315 (404)
                             ++  +.++.+||++.|+|
T Consensus       354 ~~~~~l~~~~~~~~~~~Vv~i~tGG  378 (398)
T 4d9i_A          354 PQRQSLMEKLALNKDAVVLVISTEG  378 (398)
T ss_dssp             TTHHHHHHHTTCCTTCEEEEEECBC
T ss_pred             hhhHHHHHhcCCCCCCEEEEEeCCC
Confidence                   22  45788999999975

>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*

Probab=100.00  E-value=5.2e-44  Score=357.66  Aligned_cols=294  Identities=17%  Similarity=0.180  Sum_probs=226.3

Q ss_pred             CCCCCCCCeeecCCCCCC-CCC-eEEEEeCCCCCCCChhhHHHHHHHHHHHH---hCCCCCCCEEEecCCChHHHHHHHH
Q psy14801         18 PTVPGKVPLLPQSKQGSI-LLP-TTDAKCEFMNPTGSLKDRAAWRMIEDAET---AGVLKPGYTIVEPSSGNTGIGLAMV   92 (404)
Q Consensus        18 ~~~~g~TPl~~~~~l~~~-~g~-~l~~K~E~~~ptGS~K~R~a~~~l~~a~~---~g~~~~~~~vv~~ssGN~g~a~A~~   92 (404)
                      .+.+|+|||+++++|++. +|. +||+|+|++|||||||||++.+++..+.+   ++  ++..+||++||||||.|+|++
T Consensus       125 ~l~~g~TPLv~l~~L~~~~lg~~~l~~K~E~~nPTGSFKDRga~~~~~~l~~~~~~~--~g~~~Vv~aSsGNtG~AlA~~  202 (486)
T 1e5x_A          125 SAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMK--RPVVGVGCASTGDTSAALSAY  202 (486)
T ss_dssp             CCCCCCCCEEECHHHHHHHHCCSSEEEEETTSSTTSBTTHHHHHHHHHHHHHHHHTT--CCCCEEEECCCSHHHHHHHHH
T ss_pred             cccCCCCCcEECcccchhhcCCCcEEEeeccCCCccCHHHHHHHHHHHHHHHHHHcC--CCCeEEEEcCCCHHHHHHHHH
Confidence            456899999999998877 774 89999999999999999999888766543   33  234799999999999999999


Q ss_pred             HHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhH
Q psy14801         93 AAIKGYKMVVVMPMK-MSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETT  171 (404)
Q Consensus        93 a~~~G~~~~iv~p~~-~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~  171 (404)
                      |+++|++|+||||.+ ++..|+.+++.+||+|+.+++  +|++   +.+.+++++++. +.++++++ ||. .+.||.++
T Consensus       203 a~~~Gi~~~I~~P~~~~s~~k~~~~~~~GA~vi~v~g--~~dd---~~~~a~~l~~~~-~~~~vns~-N~~-~i~gq~t~  274 (486)
T 1e5x_A          203 CASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDT--DFDG---CMKLIREITAEL-PIYLANSL-NSL-RLEGQKTA  274 (486)
T ss_dssp             HHHHTCCEEEEEEGGGCCHHHHHHHHHTTCEEEEEES--CHHH---HHHHHHHHHHHS-CEEEGGGS-HHH-HHHHHTHH
T ss_pred             HHHcCCeEEEEECCCCCCHHHHHHHHhCCCEEEEECC--CHHH---HHHHHHHHHhcC-CEEEeCCC-CHH-HHHHHHHH
Confidence            999999999999996 999999999999999999997  4554   456678888765 45666665 886 56789999


Q ss_pred             HHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhC------CCcEEEEEcCCCCccccc-CCCC--CCCCCCCccccc
Q psy14801        172 AEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKC------PSCKLVGADPFGSILAQP-QSLN--DVPENQISYNEV  241 (404)
Q Consensus       172 a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~------~~~~vi~V~p~~~~~~~~-~~~~--~~~~~~~~~~~~  241 (404)
                      ++||++|+.+ .||.+|||+|+||+++|++.+++...      |..|+++|+|.++..... ...+  .........+..
T Consensus       275 ~~Ei~~ql~~~~~D~vvvpvG~GG~i~Gi~~a~k~~~~~Gli~p~~rvi~Ve~~~~~~l~~~~~~G~~~~~~~~~~~t~a  354 (486)
T 1e5x_A          275 AIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKXCQELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFA  354 (486)
T ss_dssp             HHHHHHHTTSCCCSEEEEECSSTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEETTSSTHHHHHHTTTTTCCC--------
T ss_pred             HHHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHHhhhhccCCCCCEEEEEecCCCchHHHHHHcCCCccccCCCCCeeC
Confidence            9999999975 48999999999999999999998754      678999999998754321 0111  000011122344


Q ss_pred             cCCCCcccccccCc--cccCc----EEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh--cCCCCeEEEEec
Q psy14801        242 EGIGYSFAATTLDR--NVIDQ----WGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--LRPDQRCVVILA  313 (404)
Q Consensus       242 ~~i~~~~~~~~~~~--~~~~~----~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~--~~~~~~vv~v~~  313 (404)
                      ++++... +..+..  ..++.    ++.|+|.|+.++++ +++++|++++|+||.+++|+.+++++  ..++.+||++.|
T Consensus       355 ~gi~i~~-p~~~~~~~~~~~~~~g~~~~Vsd~e~~~ai~-l~~~eGi~~ePssA~alaa~~~~~~~g~~~~~~~vV~i~T  432 (486)
T 1e5x_A          355 SAIQIGD-PVSIDRAVYALKKCNGIVEEATEEELMDAMA-QADSTGMFICPHTGVALTALFKLRNQGVIAPTDRTVVVST  432 (486)
T ss_dssp             ---------CCCHHHHHHHHHTTCEEEEECHHHHHHHHH-HHHHTTCCCCHHHHHHHHHHHHHHHTTSSCTTCCEEEEEC
T ss_pred             ccccCCC-CccHHHHHHHHhccCCeEEEECHHHHHHHHH-HHHHCCeEEChhHHHHHHHHHHHHHhcCCCCCCeEEEEeC
Confidence            4443321 222211  12333    88999999999999 77889999999999999999988875  357789999999


Q ss_pred             CCCCCccccc
Q psy14801        314 DGVRNYLTKF  323 (404)
Q Consensus       314 ~~~~~~~~~~  323 (404)
                      |++.+|.+..
T Consensus       433 g~~~k~~~~v  442 (486)
T 1e5x_A          433 AHGLKFTQSK  442 (486)
T ss_dssp             BCGGGGHHHH
T ss_pred             CCCccCHHHH
Confidence            9999887654

>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B*

Probab=100.00  E-value=3.9e-43  Score=344.36  Aligned_cols=297  Identities=21%  Similarity=0.230  Sum_probs=224.8

Q ss_pred             CCCC-CCeeecCCCCCCCC-CeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEE-ecCCChHHHHHHHHHHHc
Q psy14801         20 VPGK-VPLLPQSKQGSILL-PTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIV-EPSSGNTGIGLAMVAAIK   96 (404)
Q Consensus        20 ~~g~-TPl~~~~~l~~~~g-~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv-~~ssGN~g~a~A~~a~~~   96 (404)
                      .+|+ |||+++++|++.+| ++||+|+|++|||||||||++.+++..+.++|.    .++| ++|+||||+|+|++|+++
T Consensus        46 ~ig~~TPL~~~~~l~~~~g~~~i~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~----~~vv~~~ssGN~g~a~A~aa~~~  121 (388)
T 1v8z_A           46 WAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGK----TRLIAETGAGQHGVATAMAGALL  121 (388)
T ss_dssp             TTCCSCCEEECHHHHHHHTSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTC----CEEEEEESSSHHHHHHHHHHHHT
T ss_pred             hcCCCCCceehHhhHhhcCCceEEEEeccCCCCCCHHHHHHHHHHHHHHHcCC----CEEEEecCchHHHHHHHHHHHHc
Confidence            5665 99999999988776 799999999999999999999999998888776    4566 589999999999999999


Q ss_pred             CCeEEEEecCC-CC--HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHH-HHHHhCCCcEe-ecCCCCCCCh----hhH
Q psy14801         97 GYKMVVVMPMK-MS--KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAH-RIASQMKNAVV-LDQFRNPNNP----LSH  167 (404)
Q Consensus        97 G~~~~iv~p~~-~~--~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~-~l~~~~~~~~~-~~e~~np~~s----i~g  167 (404)
                      |++|+||||.. .+  +.|+++++.+||+|+.++...  +..+++++.+. ++.++.++.+| ++++.||.+.    ..|
T Consensus       122 G~~~~iv~p~~~~~~~~~~~~~~~~~GA~V~~~~~~~--~~~~~a~~~a~~~~~~~~~~~~~~~~~~~n~~p~~~~~~~~  199 (388)
T 1v8z_A          122 GMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGS--RTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDF  199 (388)
T ss_dssp             TCEEEEEEEHHHHTTCHHHHHHHHHTTCEEEEECSTT--SSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHH
T ss_pred             CCcEEEEEcCCchhhhhhHHHHHHHCCCEEEEECCCC--CCHHHHHHHHHHHHHHhCCCceEecCCccCCCCchhHHHHH
Confidence            99999999974 23  467899999999999998521  12334455554 35565545445 4677776432    238


Q ss_pred             HhhHHHHHHHHh----CCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc--------CCCC------
Q psy14801        168 YETTAEEILRDT----GGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP--------QSLN------  229 (404)
Q Consensus       168 ~~~~a~ei~~q~----~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~--------~~~~------  229 (404)
                      +.++++||++|+    ...||.+|+|+|+||+++|++.+++ ..|.+|||+|+|.++.....        ....      
T Consensus       200 ~~t~~~Ei~~q~~~~~~~~~d~vvvpvG~GG~~aGi~~~~~-~~~~~~vigve~~~~~~~~~~~~~~l~~g~~~~~~~~~  278 (388)
T 1v8z_A          200 QSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFV-NDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGML  278 (388)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGT-TCTTSEEEEEEEEETBGGGTBSCCHHHHCEEEEETTEE
T ss_pred             hHHHHHHHHHHHHHhcCCCCCEEEEecCccHhHHHHHHHHh-hCCCceEEEEccCccccchhhhhHHHhcCCceeccccc
Confidence            999999999998    4459999999999999999998887 47889999999998643110        0000      


Q ss_pred             -----C-CCCCCCccccccCCCCccc---ccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHH
Q psy14801        230 -----D-VPENQISYNEVEGIGYSFA---ATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAK  300 (404)
Q Consensus       230 -----~-~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk  300 (404)
                           . ........+..+++.....   ...+.....+.++.|+|+|+.++++.+++++|++++++||++++++.++.+
T Consensus       279 ~~~~~~~~~~~~~~~tia~gl~~~~~g~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~~~sa~a~a~a~~l~~  358 (388)
T 1v8z_A          279 SYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAK  358 (388)
T ss_dssp             EEECBCTTSCBCCCCCSSTTSCCSBCCHHHHHHHHTTSEEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHH
T ss_pred             cccccccccccCCCceeeeccccCCCChhHHHHHhcCCcEEEEECHHHHHHHHHHHHHhcCCeecccHHHHHHHHHHHHH
Confidence                 0 0000011122223221110   112223445788999999999999999999999999999999999999888


Q ss_pred             hcCCCCeEEEEecCCCCCccccc
Q psy14801        301 SLRPDQRCVVILADGVRNYLTKF  323 (404)
Q Consensus       301 ~~~~~~~vv~v~~~~~~~~~~~~  323 (404)
                      +..++.+||++.||++.+|++..
T Consensus       359 ~~~~~~~vv~i~tg~g~k~~~~~  381 (388)
T 1v8z_A          359 EMSRDEIIIVNLSGRGDKDLDIV  381 (388)
T ss_dssp             TSCTTCEEEEEECBBSGGGHHHH
T ss_pred             hcCCCCEEEEEECCCCccCHHHH
Confidence            77778899999999998876644

>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...

Probab=100.00  E-value=7.6e-43  Score=342.65  Aligned_cols=296  Identities=19%  Similarity=0.215  Sum_probs=225.5

Q ss_pred             CCCC-CCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEe-cCCChHHHHHHHHHHHcC
Q psy14801         20 VPGK-VPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVE-PSSGNTGIGLAMVAAIKG   97 (404)
Q Consensus        20 ~~g~-TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~-~ssGN~g~a~A~~a~~~G   97 (404)
                      .+|+ |||+++++|++.+|++||+|+|++|||||||||++.+++..+.++|.    .+||+ +|+||||+|+|++|+++|
T Consensus        51 ~ig~~TPL~~~~~l~~~~g~~i~lK~E~l~ptGSfK~R~a~~~~~~a~~~g~----~~vi~e~ssGNhg~a~A~aa~~~G  126 (396)
T 1qop_B           51 YAGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGK----SEIIAETGAGQHGVASALASALLG  126 (396)
T ss_dssp             TTCCSCCEEECHHHHTTSSEEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTC----CEEEEEESSSHHHHHHHHHHHHHT
T ss_pred             hCCCCCCcEEhhhhhhccCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHcCc----CEEEEecCchHHHHHHHHHHHHCC
Confidence            5665 99999999999889999999999999999999999999999888886    56666 899999999999999999


Q ss_pred             CeEEEEecCC-CCH--HHHHHHHHcCCEEEEeCC-CCCCCChhhHHHHHHH-HHHhCCCcEee-cCCCCCCCh---h-hH
Q psy14801         98 YKMVVVMPMK-MSK--EKVYTMKALGAKIIRTQN-DKSYDHPEGMIAGAHR-IASQMKNAVVL-DQFRNPNNP---L-SH  167 (404)
Q Consensus        98 ~~~~iv~p~~-~~~--~k~~~l~~~Ga~v~~v~~-~~~~~~~~~~~~~a~~-l~~~~~~~~~~-~e~~np~~s---i-~g  167 (404)
                      ++|+||||.. .+.  .|+.+|+.+||+|+.++. ..++   +++++.+.+ +.++.++.+|+ +++.||...   + .|
T Consensus       127 ~~~~i~mp~~~~~~~~~~~~~~~~~GA~V~~v~~~~~~~---~~a~~~a~~~~~~~~~~~~~~~~~~~n~~p~~~~v~~g  203 (396)
T 1qop_B          127 LKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATL---KDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREF  203 (396)
T ss_dssp             CEEEEEEEHHHHHHCHHHHHHHHHTTCEEEEECSTTSSH---HHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHT
T ss_pred             CcEEEEEcCCchhhhhhHHHHHHHCCCEEEEECCCCCCH---HHHHHHHHHHHHhccCCcEEEeCCcCCCCCchHHHHHH
Confidence            9999999985 433  457899999999999984 2233   344555654 35554455554 666665321   2 37


Q ss_pred             HhhHHHHHHHHh----CCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccc----c----cCCCC------
Q psy14801        168 YETTAEEILRDT----GGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILA----Q----PQSLN------  229 (404)
Q Consensus       168 ~~~~a~ei~~q~----~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~----~----~~~~~------  229 (404)
                      +.++|+||++|+    ...||.+|+|+|+|++++|++.+++ ..|.+|+|+|+|.++...    .    .....      
T Consensus       204 ~~t~~~Ei~~Ql~~~~~~~~d~vvvpvG~GG~~~Gi~~~~~-~~~~~~vigVe~~~~~~~~~~~~~~l~~g~~~~~~g~~  282 (396)
T 1qop_B          204 QRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFI-NDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMK  282 (396)
T ss_dssp             TTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGT-TCTTSEEEEEEEEETBGGGTBSCCHHHHSEEEEETEEE
T ss_pred             HhHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHh-cCCCCEEEEEeCCCccccchhhHHHHHcCCeeeeccch
Confidence            899999999998    4469999999999999999999988 478899999999986421    0    00000      


Q ss_pred             -----C-CCCCCCccccccCCCCcc---cccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHH
Q psy14801        230 -----D-VPENQISYNEVEGIGYSF---AATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAK  300 (404)
Q Consensus       230 -----~-~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk  300 (404)
                           . ........+...++....   ....+.....+.++.|+|+|+.++++.+++++|++++++||++++++.++.+
T Consensus       283 ~~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~~~sa~a~a~a~~l~~  362 (396)
T 1qop_B          283 APMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMR  362 (396)
T ss_dssp             EEECBCTTSCBCCCCCSSGGGCCSSCCHHHHHHHHTTSSEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHH
T ss_pred             hhhcccccCCcCCCceeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHH
Confidence                 0 000001122222322111   1122334466889999999999999999999999999999999999999888


Q ss_pred             hcC-CCCeEEEEecCCCCCccccc
Q psy14801        301 SLR-PDQRCVVILADGVRNYLTKF  323 (404)
Q Consensus       301 ~~~-~~~~vv~v~~~~~~~~~~~~  323 (404)
                      +.. ++.+||++.||++.+|+...
T Consensus       363 ~~~~~~~~vv~i~tg~g~k~~~~~  386 (396)
T 1qop_B          363 EQPEKEQLLVVNLSGRGDKDIFTV  386 (396)
T ss_dssp             HSTTSCEEEEEEECBBCGGGHHHH
T ss_pred             hcCCCCCeEEEEECCCCCCCHHHH
Confidence            776 78899999999988776544

>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus}

Probab=100.00  E-value=1.2e-42  Score=342.85  Aligned_cols=297  Identities=19%  Similarity=0.206  Sum_probs=220.5

Q ss_pred             CCC-CCCeeecCCCCCCC-CCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcC
Q psy14801         20 VPG-KVPLLPQSKQGSIL-LPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKG   97 (404)
Q Consensus        20 ~~g-~TPl~~~~~l~~~~-g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G   97 (404)
                      .+| +|||+++++|++.+ +++||+|+|++|||||||+|++.+++..+.++|+.   ..|+++|+||||+|+|++|+++|
T Consensus        73 ~ig~~TPL~~~~~Ls~~~gg~~i~lK~E~l~ptGSfK~R~a~~~i~~a~~~g~~---~vI~~~ssGNhg~avA~aaa~~G  149 (418)
T 1x1q_A           73 FAGRPTPLYHAKRLSEYWGGAQVFLKREDLLHTGAHKINNTLGQALLARRMGKR---RVIAETGAGQHGVSVATVAALFG  149 (418)
T ss_dssp             TTCCSCCEEECHHHHHHHTSSEEEEEEGGGSGGGBTTHHHHHHHHHHHHHHTCC---EEEEECSSSHHHHHHHHHHHHHT
T ss_pred             ccCCCCCcEEhHHhHhhcCCceEEEEEccCCcCccHHHHHHHHHHHHHHHcCCC---EEEEecCchHHHHHHHHHHHHcC
Confidence            344 59999999998877 57999999999999999999999999888887761   34456999999999999999999


Q ss_pred             CeEEEEecCCC---CHHHHHHHHHcCCEEEEeCC-CCCCCChhhHHHHHH-HHHHhCCCcEee-cCCCCCCCh---h-hH
Q psy14801         98 YKMVVVMPMKM---SKEKVYTMKALGAKIIRTQN-DKSYDHPEGMIAGAH-RIASQMKNAVVL-DQFRNPNNP---L-SH  167 (404)
Q Consensus        98 ~~~~iv~p~~~---~~~k~~~l~~~Ga~v~~v~~-~~~~~~~~~~~~~a~-~l~~~~~~~~~~-~e~~np~~s---i-~g  167 (404)
                      ++|+||||...   +..|+.+++.+||+|+.++. ..+|   +++++.+. ++.++.++.+|+ +++.||...   + .|
T Consensus       150 i~~~I~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~---~~a~~~a~~~~~~~~~~~~~i~~~~~n~~p~~~~v~~g  226 (418)
T 1x1q_A          150 LECVVYMGEEDVRRQALNVFRMKLLGAEVRPVAAGSRTL---KDATNEAIRDWITNVRTTFYILGSVVGPHPYPMMVRDF  226 (418)
T ss_dssp             CEEEEEEEHHHHHTCHHHHHHHHHTTCEEEEECSTTSSH---HHHHHHHHHHHHHTTTTEEECCCCSSSSTTHHHHHHHH
T ss_pred             CCEEEEECCCcchhhhHHHHHHHHCCCEEEEECCCCCCH---HHHHHHHHHHHHHhCCCcEEEeCCccCCCCcHHHHHHH
Confidence            99999999852   23678899999999999984 1233   33445453 345554455554 666665321   2 48


Q ss_pred             HhhHHHHHHHHhC----CCcCEEEEccCCChhHHHHHHHHHHh-CCCcEEEEEcCCCCcccc--------cCCCCC----
Q psy14801        168 YETTAEEILRDTG----GKVDMIVLGCGTGGTASGIGRKIKEK-CPSCKLVGADPFGSILAQ--------PQSLND----  230 (404)
Q Consensus       168 ~~~~a~ei~~q~~----~~~~~vvv~~gsG~~~~Gi~la~~~~-~~~~~vi~V~p~~~~~~~--------~~~~~~----  230 (404)
                      +.++++||++|+.    ..||.+|+|+|+|++++|++.+++.. .|.+|||+|+|.++....        ......    
T Consensus       227 q~t~~~Ei~~Ql~~~~~~~~D~vvvpvGgGG~~~Gi~~~~k~l~~p~~~vigVe~~g~~~~~~~~~~~l~~G~~~~~~g~  306 (418)
T 1x1q_A          227 QSVIGEEVKRQSLELFGRLPDALIAAVGGGSNAIGLFAPFAYLPEGRPKLIGVEAAGEGLSTGRHAASIGAGKRGVLHGS  306 (418)
T ss_dssp             HTHHHHHHHHHHHHHHSSCCSEEEEECSSSSHHHHHHHHHHTSCTTCCEEEEEEECCTTSSSCHHHHHHHHTCEEEETTE
T ss_pred             HHHHHHHHHHHHHhhcCCCCCEEEEecCCcHhHHHHHHHHHHhCCCCCeEEEEecCCcccccHHHHHHHHcCCeeeeccc
Confidence            9999999999983    35899999999999999999999876 788999999999873211        000000    


Q ss_pred             --------CCCCCCccccccCCCCccc---ccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHH
Q psy14801        231 --------VPENQISYNEVEGIGYSFA---ATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAA  299 (404)
Q Consensus       231 --------~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~l  299 (404)
                              ........+...++.....   ...+.....+.++.|+|+|+.++++.+++++|++++++||++++++.++.
T Consensus       307 ~~~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~~~~sa~a~a~a~~~~  386 (418)
T 1x1q_A          307 YMYLLYDHDGQITPAHSVSAGLDYPGVGPEHSYYADAGVAEYASVTDEEALEGFKLLARLEGIIPALESAHAIAYAAKVV  386 (418)
T ss_dssp             EEEBCCC----------------CSBCCHHHHHHHHHTSEEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHT
T ss_pred             cccccccccccccCCceeeeccCCCCCCHHHHHHHhccCeEEEEECHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHH
Confidence                    0000011122333321111   11122334578999999999999999999999999999999999998887


Q ss_pred             HhcCCCCeEEEEecCCCCCcccc
Q psy14801        300 KSLRPDQRCVVILADGVRNYLTK  322 (404)
Q Consensus       300 k~~~~~~~vv~v~~~~~~~~~~~  322 (404)
                      ++..++.+||++.||++.+++..
T Consensus       387 ~~~~~~~~Vv~vlsG~g~kd~~~  409 (418)
T 1x1q_A          387 PEMDKDQVVVINLSGRGDKDVTE  409 (418)
T ss_dssp             TTSCTTCEEEEEECBBGGGTHHH
T ss_pred             HhcCCCCeEEEEECCCCCCCHHH
Confidence            76667889999999998777654

>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A

Probab=100.00  E-value=6.6e-42  Score=337.24  Aligned_cols=298  Identities=20%  Similarity=0.175  Sum_probs=214.4

Q ss_pred             CCCC-CCeeecCCCCCCC-CCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcC
Q psy14801         20 VPGK-VPLLPQSKQGSIL-LPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKG   97 (404)
Q Consensus        20 ~~g~-TPl~~~~~l~~~~-g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G   97 (404)
                      .+|+ |||+++++|++.+ +.+||+|+|++|||||||+|++.+++..+.+.|+.   .+|+++|+||||+|+|++|+++|
T Consensus        77 ~~g~~TPL~~~~~Ls~~~gg~~i~lK~E~lnptGSfK~R~a~~~~~~a~~~g~~---~vI~~~ssGNhG~A~A~aaa~~G  153 (422)
T 2o2e_A           77 YAGRPSPLYEATRLSQHAGSARIFLKREDLNHTGSHKINNVLGQALLARRMGKT---RVIAETGAGQHGVATATACALLG  153 (422)
T ss_dssp             TSSCSCCEEECGGGGGGTTTCEEEEECGGGCCSSTTHHHHHHHHHHHHHHTTCC---EEEEEESSSHHHHHHHHHHHHHT
T ss_pred             hCCCCCCeEEChhhHhhcCCCeEEEEEcCCCCCCcHHHHHHHHHHHHHHHcCCC---eEEEecCccHHHHHHHHHHHHcC
Confidence            4444 9999999999888 47999999999999999999999999988887751   34557999999999999999999


Q ss_pred             CeEEEEecCCCC---HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHH-HHHhCCCcEee-cCCCCCCC----hhhHH
Q psy14801         98 YKMVVVMPMKMS---KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHR-IASQMKNAVVL-DQFRNPNN----PLSHY  168 (404)
Q Consensus        98 ~~~~iv~p~~~~---~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~-l~~~~~~~~~~-~e~~np~~----si~g~  168 (404)
                      ++|+||||....   ..|+.+|+.+||+|+.++..  ....+++++.+.+ +.++.++.+|+ .++.||..    ...|+
T Consensus       154 ~~~~I~mp~~~~~~q~~kv~~~~~~GA~Vv~v~~~--~~~~~da~~~a~~~~~~~~~~~~yi~~s~~g~~p~~~~v~~~q  231 (422)
T 2o2e_A          154 LDCVIYMGGIDTARQALNVARMRLLGAEVVAVQTG--SKTLKDAINEAFRDWVANADNTYYCFGTAAGPHPFPTMVRDFQ  231 (422)
T ss_dssp             CEEEEEEEHHHHHHSHHHHHHHHHTTCEEEEECST--TSCHHHHHHHHHHHHHHHTTTEEECCCCSSSCCCCHHHHHHHT
T ss_pred             CcEEEEeCCCcchhhHHHHHHHHHCCCEEEEECCC--CCCHHHHHHHHHHHHHhcCCCcEEEeCCccCCCCcHHHHHHHH
Confidence            999999998532   46778999999999999851  1123344555533 45554455554 66654421    12378


Q ss_pred             hhHHHHHHHHh----CCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccc----cc-CCCCCCC-------
Q psy14801        169 ETTAEEILRDT----GGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILA----QP-QSLNDVP-------  232 (404)
Q Consensus       169 ~~~a~ei~~q~----~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~----~~-~~~~~~~-------  232 (404)
                      .++++||.+|+    ...||.+|+|+|+|++++|++.++.. .|.+|+|+|+|.++...    .. ...+...       
T Consensus       232 ~t~g~Ei~~Ql~~~~~~~pD~vvvpvG~GG~~~Gi~~~~~~-~p~v~vigVe~~g~~~~~~~~~~~l~~g~~~~~~g~~~  310 (422)
T 2o2e_A          232 RIIGMEARVQIQGQAGRLPDAVVACVGGGSNAIGIFHAFLD-DPGVRLVGFEAAGDGVETGRHAATFTAGSPGAFHGSFS  310 (422)
T ss_dssp             THHHHHHHHHHHHHSSSCCSEEEEEGGGHHHHHTTSGGGTT-CTTCEEEEEEECC-------------------------
T ss_pred             HHHHHHHHHHHHHhhCCCCCEEEEccCCchhHHHHHHHHhc-CCCCeEEEEecCCCcccchhHHHHHHcCCceeccccch
Confidence            99999999997    33599999999999999999777753 78899999999986211    00 0000000       


Q ss_pred             --------CCCCccccccCCCCcc---cccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh
Q psy14801        233 --------ENQISYNEVEGIGYSF---AATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS  301 (404)
Q Consensus       233 --------~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~  301 (404)
                              ......+...++....   ....+.....+.++.|+|+|+.++++.+++.+|++++++||++++++.++.++
T Consensus       311 ~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~~esa~A~a~a~~l~~~  390 (422)
T 2o2e_A          311 YLLQDEDGQTIESHSISAGLDYPGVGPEHAWLKEAGRVDYRPITDSEAMDAFGLLCRMEGIIPAIESAHAVAGALKLGVE  390 (422)
T ss_dssp             ------------------------------------CCEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_pred             hhcccccccccCCceeecccCCCCCCHHHHHHHHhCCeeEEEECHHHHHHHHHHHHHHcCCccCchHHHHHHHHHHHHHh
Confidence                    0001112222222110   11123344568899999999999999999999999999999999999988887


Q ss_pred             cCCCCeEEEEecCCCCCccccc
Q psy14801        302 LRPDQRCVVILADGVRNYLTKF  323 (404)
Q Consensus       302 ~~~~~~vv~v~~~~~~~~~~~~  323 (404)
                      ..++.+||++.||++.+++...
T Consensus       391 ~~~~~~vvvilsG~g~kd~~~~  412 (422)
T 2o2e_A          391 LGRGAVIVVNLSGRGDKDVETA  412 (422)
T ss_dssp             HCTTCEEEEECCSCSSSHHHHH
T ss_pred             cCCCCEEEEEeCCCCCCCHHHH
Confidence            7788899999999998876544

>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1

Probab=100.00  E-value=4.3e-39  Score=317.98  Aligned_cols=278  Identities=15%  Similarity=0.112  Sum_probs=206.8

Q ss_pred             CCCCeeecCCCCCCCCCeEEEEeCCC-CCCCChhhHHHHHHH---HHHHHhCCCCCCCEEEecCCChHHHHHH-HHHHHc
Q psy14801         22 GKVPLLPQSKQGSILLPTTDAKCEFM-NPTGSLKDRAAWRMI---EDAETAGVLKPGYTIVEPSSGNTGIGLA-MVAAIK   96 (404)
Q Consensus        22 g~TPl~~~~~l~~~~g~~l~~K~E~~-~ptGS~K~R~a~~~l---~~a~~~g~~~~~~~vv~~ssGN~g~a~A-~~a~~~   96 (404)
                      ++|||+++++       +||+ +|.+ |||||||||++.+++   ..+ +++   +..+|+++||||||.|+| ++|+++
T Consensus        82 ~~TPL~~l~~-------~i~~-~E~~~~pTgSfKdr~a~~l~~~l~~a-~~~---~~~~Iv~atsGNtG~A~A~~~a~~~  149 (428)
T 1vb3_A           82 FPAPVANVES-------DVGC-LELFHGPTLAFKDFGGRFMAQMLTHI-AGD---KPVTILTATSGDTGAAVAHAFYGLP  149 (428)
T ss_dssp             SCCCEEEEET-------TEEE-EECCCSTTSBTHHHHHHHHHHHHHHH-TTT---CCEEEEEECSSSHHHHHHHHTTTCT
T ss_pred             CCCCeEEecC-------CeEE-eeccCCCcccHHHHHHHHHHHHHHHH-Hhc---CCCEEEecCCchHHHHHHHHHhhhc
Confidence            6799999975       6999 5655 799999999999874   444 222   347899999999999999 599999


Q ss_pred             CCeEEEEecC-CCCHHHHHHHHHcCCEE--EEeCCCCCCCChhhHHHHHHHHHHh-----CCCcEeecCCCCCCChhhHH
Q psy14801         97 GYKMVVVMPM-KMSKEKVYTMKALGAKI--IRTQNDKSYDHPEGMIAGAHRIASQ-----MKNAVVLDQFRNPNNPLSHY  168 (404)
Q Consensus        97 G~~~~iv~p~-~~~~~k~~~l~~~Ga~v--~~v~~~~~~~~~~~~~~~a~~l~~~-----~~~~~~~~e~~np~~si~g~  168 (404)
                      |++|+||||. .+++.|+++|+.+||+|  +.+++  +|+++   .+.++++.++     ..+.++++. .||. .+.||
T Consensus       150 G~~~~I~~P~~~~s~~k~~~m~~~GA~V~~v~v~g--~~d~~---~~~~~~~~~d~~~~~~~~~~~~n~-~n~~-~~~gq  222 (428)
T 1vb3_A          150 NVKVVILYPRGKISPLQEKLFCTLGGNIETVAIDG--DFDAC---QALVKQAFDDEELKVALGLNSANS-INIS-RLLAQ  222 (428)
T ss_dssp             TEEEEEEEETTCSCHHHHHHHHSCCTTEEEEEEES--CHHHH---HHHHHHGGGCHHHHHHHTEECCST-TSHH-HHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhcCCeEEEEEeCC--CHHHH---HHHHHHHHhchhhhhhcCeeeCCC-CCHH-HHHHH
Confidence            9999999999 59999999999999999  66654  56554   3445555532     113333333 4664 46789


Q ss_pred             hhHHHHHHHHhCC---CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCC
Q psy14801        169 ETTAEEILRDTGG---KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIG  245 (404)
Q Consensus       169 ~~~a~ei~~q~~~---~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~  245 (404)
                      .++++||++|+.+   .||.+|||+|+||+++|++.+++...|..|+|+|++.+.........+.........+..++++
T Consensus       223 ~t~~~Ei~~ql~~~g~~~d~vvvpvG~GG~i~G~~~a~~~g~p~~kii~a~~~~~~l~~~~~~G~~~~~~~~~tis~g~~  302 (428)
T 1vb3_A          223 ICYYFEAVAQLPQETRNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVNDTVPRFLHDGQWSPKATQATLSNAMD  302 (428)
T ss_dssp             THHHHHHHTTSCTTTTTSEEEEEECSSCHHHHHHHHHHHTTCCCSEEEEEECSCCHHHHHHHHSCCCCCCCCCCSSGGGC
T ss_pred             HHHHHHHHHHcccccCCCCEEEEeCCchHHHHHHHHHHHcCCCCCeEEeecCCChHHHHHHHcCCcccCCCCCcccchhc
Confidence            9999999999975   4899999999999999999999887887899999987742211000111100111122333332


Q ss_pred             CcccccccCc------cc-----cCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecC
Q psy14801        246 YSFAATTLDR------NV-----IDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILAD  314 (404)
Q Consensus       246 ~~~~~~~~~~------~~-----~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~  314 (404)
                      .. .+.++.+      ..     .+.++.++|.|+.++++.+ +++|++++|+||.+++++.++.+   ++.+||++.|+
T Consensus       303 i~-~p~~~~~~~~l~~~~~~~~~~~~~~~Vsd~e~~~a~~~l-~~eGi~~~p~sa~a~aa~~~~~~---~~~~vV~i~tg  377 (428)
T 1vb3_A          303 VS-QPNNWPRVEELFRRKIWQLKELGYAAVDDETTQQTMREL-KELGYTSEPHAAVAYRALRDQLN---PGEYGLFLGTA  377 (428)
T ss_dssp             CS-SCTTHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHHH-HHTTCCCCHHHHHHHHHHHTTCC---TTCEEEEEECB
T ss_pred             CC-CCccHHHHHHHHhcchhhhhCcEEEEECHHHHHHHHHHH-HHCCeEECchHHHHHHHHHHHhC---CCCcEEEEeCC
Confidence            21 1222211      11     4688999999999999999 99999999999999999877554   67899999999


Q ss_pred             CCCCccccc
Q psy14801        315 GVRNYLTKF  323 (404)
Q Consensus       315 ~~~~~~~~~  323 (404)
                      ++.+|.+..
T Consensus       378 ~~~K~~~~v  386 (428)
T 1vb3_A          378 HPAKFKESV  386 (428)
T ss_dssp             CGGGGHHHH
T ss_pred             CCCCCHHHH
Confidence            999987654

>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1

Probab=100.00  E-value=2.5e-37  Score=309.16  Aligned_cols=289  Identities=14%  Similarity=0.078  Sum_probs=207.6

Q ss_pred             CCCCCeee--cCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHH---HHHH-HhCC-----CCCCCEEEecCCChHHHHH
Q psy14801         21 PGKVPLLP--QSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMI---EDAE-TAGV-----LKPGYTIVEPSSGNTGIGL   89 (404)
Q Consensus        21 ~g~TPl~~--~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l---~~a~-~~g~-----~~~~~~vv~~ssGN~g~a~   89 (404)
                      +|.|||++  ++++     .+||+|+|++|||||||||++..++   ..++ ++|.     ++++.+||++||||||.| 
T Consensus        94 ~g~TPLv~~~l~~l-----~~l~~K~e~~nPTgSFKDrga~~~~~~~~~a~~~~g~~~~~~~~~~~~Iv~ATSGNtG~A-  167 (514)
T 1kl7_A           94 DEVTPLVQNVTGDK-----ENLHILELFHGPTYAFKDVALQFVGNLFEYFLQRTNANLPEGEKKQITVVGATSGDTGSA-  167 (514)
T ss_dssp             TTSSCEECCTTCSS-----SCEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHHHTTSCSSSCCCEEEEEECSSSHHHH-
T ss_pred             CCCCceeehhcccc-----cchhhhhhccCCCCcHHHHHHHHHHHHHHHHHHhcCCccccccCCCCEEEECCCCcHHHH-
Confidence            78899999  8765     4799999999999999999999884   4443 3452     456689999999999999 


Q ss_pred             HHHH--HHcCCeEEEEecCC-CCHHHHHHHH---HcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCC-cEeecCCCCCC
Q psy14801         90 AMVA--AIKGYKMVVVMPMK-MSKEKVYTMK---ALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKN-AVVLDQFRNPN  162 (404)
Q Consensus        90 A~~a--~~~G~~~~iv~p~~-~~~~k~~~l~---~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~-~~~~~e~~np~  162 (404)
                      |++|  ++.|++++||||.+ +++.++.+|.   .+|++++.+++  +||++   .+.++++.++.+- ..+...+.||.
T Consensus       168 A~~a~a~~~Gi~~~I~~P~~~~S~~q~~qm~~~~g~~~~vv~v~g--~fdda---~~~vk~l~~~~~~~~~~~~~~~Ns~  242 (514)
T 1kl7_A          168 AIYGLRGKKDVSVFILYPTGRISPIQEEQMTTVPDENVQTLSVTG--TFDNC---QDIVKAIFGDKEFNSKHNVGAVNSI  242 (514)
T ss_dssp             HHHHHTTCTTEEEEEEEETTSSCHHHHHHHHHCCCTTEEEEEESS--CHHHH---HHHHHHHHHCSSCC--CCBCCCCSC
T ss_pred             HHHHHHhhcCCeEEEEEcCCCCCHHHHHHHhhhcCCCEEEEEcCC--CHHHH---HHHHHHHHhcccccccceeEeeCCC
Confidence            6656  89999999999997 8987777773   34556666654  56654   5567888776420 01112356666


Q ss_pred             Ch--hhHHhhHHHHHHHHh-CC---CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCC-CC
Q psy14801        163 NP--LSHYETTAEEILRDT-GG---KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPE-NQ  235 (404)
Q Consensus       163 ~s--i~g~~~~a~ei~~q~-~~---~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~-~~  235 (404)
                      |+  +.++.+.++|+.+|+ .+   .||.+|||+|+||+++|++.+.+...|..|+|+|+|.+.+.......+.... ..
T Consensus       243 N~~ri~gQ~tyy~e~~~ql~~~~~~~~d~~vvP~GngG~i~a~~~ak~~G~p~~rli~v~~~n~~l~~~~~~G~~~~~~~  322 (514)
T 1kl7_A          243 NWARILAQMTYYFYSFFQATNGKDSKKVKFVVPSGNFGDILAGYFAKKMGLPIEKLAIATNENDILDRFLKSGLYERSDK  322 (514)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHSSSSCCCEEEEEECSSSHHHHHHHHHHHHTCCCCCEEEEECSCCHHHHHHHHSEEECCSS
T ss_pred             CHhHHhhHHHHHHHHHHHHhhhcCCCCcEEEEECCchHHHHHHHHHHHcCCCCCEEEEEeCCcchHHHHHhcCCccCCCC
Confidence            65  467889999999998 43   5889999999999999998766665677799999999964432111111000 00


Q ss_pred             CccccccCCCCcccccccCccc---cC------------------------------------------cEEecChHHHH
Q psy14801        236 ISYNEVEGIGYSFAATTLDRNV---ID------------------------------------------QWGKCGDKDTF  270 (404)
Q Consensus       236 ~~~~~~~~i~~~~~~~~~~~~~---~~------------------------------------------~~~~v~d~e~~  270 (404)
                      ...+..+++.. ..|.++.+..   .+                                          ..+.|+|.|+.
T Consensus       323 ~~~Tis~amdi-~~psn~er~l~~l~~~~~~~~~~~~d~~~v~~~~~~l~~~gg~~~~~~~~~~~~~~f~~~~Vsd~e~~  401 (514)
T 1kl7_A          323 VAATLSPAMDI-LISSNFERLLWYLAREYLANGDDLKAGEIVNNWFQELKTNGKFQVDKSIIEGASKDFTSERVSNEETS  401 (514)
T ss_dssp             CCCCSCGGGCC-SSCTTHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHSEEECCHHHHHHHTTTEEEEECCHHHHH
T ss_pred             CCCeechhhhc-CCCCcHHHHHHHHhccccccccccccHHHHHHHHHHHHhcCCeeccHHHHHHhhcCceEEEECHHHHH
Confidence            01112222211 1122221110   11                                          36789999999


Q ss_pred             HHHHHHHHhc----CcEeccchhhHHHHHHHHHHh-cCCCCeEEEEecCCCCCccc
Q psy14801        271 LMARRLIKSE----GLLVGGSSGTAMHVACQAAKS-LRPDQRCVVILADGVRNYLT  321 (404)
Q Consensus       271 ~~~~~l~~~~----gi~~~~~tg~tlag~~~~lk~-~~~~~~vv~v~~~~~~~~~~  321 (404)
                      ++++++++++    |++++|+||.+++++.++.++ ..++.++|++.|+++.+|..
T Consensus       402 ~ai~~l~~~~~~~~G~~~ep~tAv~~aa~~~~~~~g~~~~~~vV~l~Ta~~~Kf~~  457 (514)
T 1kl7_A          402 ETIKKIYESSVNPKHYILDPHTAVGVCATERLIAKDNDKSIQYISLSTAHPAKFAD  457 (514)
T ss_dssp             HHHHHHHHHCCSSTTCCCCHHHHHHHHHHHHHHHHHCCTTSEEEEEECBCGGGGHH
T ss_pred             HHHHHHHHhCCCCCCEEEcccHHHHHHHHHHHHHhccCCCCcEEEEECCchhhhHH
Confidence            9999999999    999999999999999988766 35778999999999988754

>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV}

Probab=100.00  E-value=9.9e-36  Score=294.09  Aligned_cols=276  Identities=14%  Similarity=0.140  Sum_probs=199.5

Q ss_pred             CCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHH---HHHHH-HhCCCCCCCEEEecCCChHH-HHHHHHHHHcC
Q psy14801         23 KVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRM---IEDAE-TAGVLKPGYTIVEPSSGNTG-IGLAMVAAIKG   97 (404)
Q Consensus        23 ~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~---l~~a~-~~g~~~~~~~vv~~ssGN~g-~a~A~~a~~~G   97 (404)
                      -|||+++..       ++|+|.|++|||||||||++.++   +..+. ++|.   +.+||++|||||| .+++++|+++|
T Consensus        93 ~~pl~~l~~-------~~~~kee~~~PTgSFKDRga~~~~~~l~~a~~~~g~---~~~Vv~ASSGNtG~aa~aa~a~~~G  162 (468)
T 4f4f_A           93 VCPLVQTDA-------NEFVLELFHGPTLAFKDVAMQLLARMMDYVLAQRGE---RATIVGATSGDTGGAAIEAFGGRDN  162 (468)
T ss_dssp             SSCEEEEET-------TEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHTTC---CEEEEEECSSHHHHHHHHHHTTCSS
T ss_pred             CCceEEecC-------CeehHHhccCCcccHHHHHHHHHHHHHHHHHHhcCC---CcEEEEECCchHHHHHHHHHHhccC
Confidence            499998853       69999999999999999999988   66764 4554   1489999999999 55677899999


Q ss_pred             CeEEEEecCC-CCHHHHHHHHHcCC-EE--EEeCCCCCCCChhhHHHHHHHHHHhCC-----CcEeecCCCCCCChhhHH
Q psy14801         98 YKMVVVMPMK-MSKEKVYTMKALGA-KI--IRTQNDKSYDHPEGMIAGAHRIASQMK-----NAVVLDQFRNPNNPLSHY  168 (404)
Q Consensus        98 ~~~~iv~p~~-~~~~k~~~l~~~Ga-~v--~~v~~~~~~~~~~~~~~~a~~l~~~~~-----~~~~~~e~~np~~si~g~  168 (404)
                      ++++||||.+ +++.|+.+|+.+|+ +|  +.+++  +||++   .+.++++.++.+     ...+++ ..||. .+.|+
T Consensus       163 i~~~I~~P~~~~s~~k~~~~~~~gganV~vv~v~g--~fdda---~~~~k~~~~d~~~~~~~~~~~vn-sin~~-ri~GQ  235 (468)
T 4f4f_A          163 TDIFILFPNGRVSPVQQRQMTSSGFSNVHALSIEG--NFDDC---QNLVKGMFNDLEFCDALSLSGVN-SINWA-RIMPQ  235 (468)
T ss_dssp             EEEEEEEETTCSCHHHHHHHHCSCCTTEEEEEEES--CHHHH---HHHHHHHHHCHHHHHHHTEEECC-TTSHH-HHGGG
T ss_pred             CcEEEEeCCCCCCHHHHHHHHhcCCCeEEEeecCC--CHHHH---HHHHHHHHhccccccccceEeCC-CCCHH-HHHhH
Confidence            9999999998 99999999999975 55  66665  57655   444666665431     123323 24554 57899


Q ss_pred             hhHHHHHHHHhCCCcCE---EEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc-CCCCCCCCCCCccccccCC
Q psy14801        169 ETTAEEILRDTGGKVDM---IVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP-QSLNDVPENQISYNEVEGI  244 (404)
Q Consensus       169 ~~~a~ei~~q~~~~~~~---vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~-~~~~~~~~~~~~~~~~~~i  244 (404)
                      .++++||++|+. .||.   ++||+|+||+++|++++.+...|..|+|+| +.++..+.. ...+.........+..+++
T Consensus       236 ~T~~~Ei~~ql~-~~d~~v~vvVPvG~GG~i~g~~~Ak~mGlPi~kli~a-~n~~~~l~~~l~~G~~~~~~~~~Tia~sm  313 (468)
T 4f4f_A          236 VVYYFTAALSLG-APDRAVSFTVPTGNFGDIFAGYVAKRMGLPIEQLIIA-TNDNDILSRTLESGAYEMRGVAQTTSPSM  313 (468)
T ss_dssp             HHHHHHHHHHTT-TTSSCEEEEEECSSSHHHHHHHHHHHHTCCEEEEEEE-ECSCCHHHHHHHHSEEECCCCCCCSCGGG
T ss_pred             HHHHHHHHHhcc-cCCCCeEEEEEeCCcHHHHHHHHHHHhCCCCCEEEEE-eCCchHHHHHHHcCCceecCCcceeCchh
Confidence            999999999997 6888   999999999999999996665677799999 555432211 0001000001111222222


Q ss_pred             CCcccccccCc----------------------------------cccC--cEEecChHHHHHHHHHHHHhcCcEeccch
Q psy14801        245 GYSFAATTLDR----------------------------------NVID--QWGKCGDKDTFLMARRLIKSEGLLVGGSS  288 (404)
Q Consensus       245 ~~~~~~~~~~~----------------------------------~~~~--~~~~v~d~e~~~~~~~l~~~~gi~~~~~t  288 (404)
                      .... +.++.+                                  ...+  ..+.|+|.|+.++++++++++|++++|+|
T Consensus       314 di~~-~sN~erl~~~l~~~d~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~VsD~ei~~ai~~l~~~~g~~vEP~~  392 (468)
T 4f4f_A          314 DIQI-SSNFERLLFEAHGRDAAAVRGLMQGLKQSGGFTISEKPLSAIRSEFSAGRSTVDETAATIESVLSKDGYLLDPHS  392 (468)
T ss_dssp             CCSS-CTTHHHHHHHHTTTCHHHHHHHHHHHHHHSEEECCHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             hcCc-cchHHHHHHHHhccCHHHHHHHHHHHHhcCCeeccHHHHHHHhhcceEEEECHHHHHHHHHHHHHHCCEEECHhH
Confidence            2110 111100                                  0001  15789999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhcCCCCeEEEEecCCCCCccc
Q psy14801        289 GTAMHVACQAAKSLRPDQRCVVILADGVRNYLT  321 (404)
Q Consensus       289 g~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~  321 (404)
                      |.+++++.++.   .++.++|++.|+++.||.+
T Consensus       393 Ava~aa~~~~~---~~~~~~V~l~Ta~~~Kf~~  422 (468)
T 4f4f_A          393 AIGVKVAREKA---SGTAPMVVLATAHPAKFPD  422 (468)
T ss_dssp             HHHHHHHHHHC---CSSSCEEEEECBCGGGSHH
T ss_pred             HHHHHHHHHHh---CCCCeEEEEecCCccccHH
Confidence            99999987752   4678899999999988743

>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis}

Probab=100.00  E-value=2.1e-34  Score=284.53  Aligned_cols=283  Identities=15%  Similarity=0.082  Sum_probs=197.1

Q ss_pred             CCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHH---HHHHHH-hCCCCCCCEEEecCCChHHHHHHHHHH-HcC
Q psy14801         23 KVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRM---IEDAET-AGVLKPGYTIVEPSSGNTGIGLAMVAA-IKG   97 (404)
Q Consensus        23 ~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~---l~~a~~-~g~~~~~~~vv~~ssGN~g~a~A~~a~-~~G   97 (404)
                      -|||.++..-   -+.++|+|.|++|||||||||++.++   +..+.+ +|.   +.+|+++||||||.|++++++ +.|
T Consensus       102 i~Pl~~l~~~---~~~~l~vkee~~~PTgSFKDRga~~~~~ll~~a~~~~g~---~~~Vv~ASSGNtG~Aaa~a~~~~~G  175 (487)
T 3v7n_A          102 ITPLTTLGTE---NGAPVSLLELSNGPTLAFKDMAMQLLGNLFEYTLAKHGE---TLNILGATSGDTGSAAEYAMRGKEG  175 (487)
T ss_dssp             SSCEEEEEEE---TTEEEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHTTTC---CEEEEEECSSHHHHHHHHHHTTCTT
T ss_pred             CceeEEecCC---CCcceeHHhhccCCcCcHHHHHHHHHHHHHHHHHHhcCC---CcEEEEeCChHHHHHHHHHHHhccC
Confidence            3899988520   01139999999999999999999988   777754 454   246999999999999777665 899


Q ss_pred             CeEEEEecCC-CCHHHHHHHHHcCC---EEEEeCCCCCCCChhhHHHHHHHHHHhC-----CCcEeecCCCCCCChhhHH
Q psy14801         98 YKMVVVMPMK-MSKEKVYTMKALGA---KIIRTQNDKSYDHPEGMIAGAHRIASQM-----KNAVVLDQFRNPNNPLSHY  168 (404)
Q Consensus        98 ~~~~iv~p~~-~~~~k~~~l~~~Ga---~v~~v~~~~~~~~~~~~~~~a~~l~~~~-----~~~~~~~e~~np~~si~g~  168 (404)
                      ++++||||.+ +++.|+.+|+.+|+   +++.+++  +||++++   .++++..+.     .+..+++. .||. .+.|+
T Consensus       176 i~~~I~~P~~~~s~~k~~qm~~~Ga~nv~vv~v~G--~fDda~~---~vk~~~~d~~~~~~~~l~~vns-~Np~-ri~gQ  248 (487)
T 3v7n_A          176 VRVFMLSPHKKMSAFQTAQMYSLQDPNIFNLAVNG--VFDDCQD---IVKAVSNDHAFKAQQKIGTVNS-INWA-RVVAQ  248 (487)
T ss_dssp             EEEEEEEETTCSCHHHHHHHHTCCCTTEEEEEEES--CHHHHHH---HHHHHHTCHHHHHHTTEECCST-TCHH-HHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHhcCCCcEEEEEECC--CHHHHHH---HHHHhhhchHHHhhcCeeeeCC-CCHH-HHHhH
Confidence            9999999997 99999999999998   6777876  5665544   455555421     12233332 3553 46788


Q ss_pred             hhHHHHHHHHhCC---CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCcccc---cc
Q psy14801        169 ETTAEEILRDTGG---KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNE---VE  242 (404)
Q Consensus       169 ~~~a~ei~~q~~~---~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~---~~  242 (404)
                      .+.++++..|+.+   .||.++||+|+||+++|++++.+...|-.|+|++++++.+.......+.........+.   .+
T Consensus       249 ~tyy~~~~~el~~~~~~~d~vvVP~GngG~i~g~~~A~~mGlp~~rli~a~~~n~~l~~~~~~G~~~~~~~~~Ti~t~s~  328 (487)
T 3v7n_A          249 VVYYFKGYFAATRSNDERVSFTVPSGNFGNVCAGHIARMMGLPIEKLVVATNENDVLDEFFRTGAYRVRSAQDTYHTSSP  328 (487)
T ss_dssp             HHHHHHHHHHTCSSTTCCEEEEEGGGCHHHHHHHHHHHHTTCCEEEEEEECTTCHHHHHHHHHSEEEC------------
T ss_pred             HHHHHHHHHHHHhcCCCCcEEEEecCchHHHHHHHHHHHcCCCCceEEEEeCCCcHHHHHHHcCCcccCCCCCccccCCc
Confidence            8888888888742   48999999999999999998877666766999999998532211111110000001111   22


Q ss_pred             CCCCcccccccCc-------------------------c-------------ccCcEEecChHHHHHHHHHHHHhcCcEe
Q psy14801        243 GIGYSFAATTLDR-------------------------N-------------VIDQWGKCGDKDTFLMARRLIKSEGLLV  284 (404)
Q Consensus       243 ~i~~~~~~~~~~~-------------------------~-------------~~~~~~~v~d~e~~~~~~~l~~~~gi~~  284 (404)
                      .+.... |.++.+                         .             ..-....++|+|+.++++++++++|+++
T Consensus       329 smdI~~-psn~er~l~~l~~~d~~~~~~~m~~l~~~g~~~l~~~~~~~~~~~~~~~~~~VsDee~~~air~l~~~~G~l~  407 (487)
T 3v7n_A          329 SMDISK-ASNFERFVFDLLGRDPARVVQLFRDVEQKGGFDLAASGDFARVAEFGFVSGRSTHADRIATIRDVFERYRTMI  407 (487)
T ss_dssp             -------CHHHHHHHHHHTTTCHHHHHHHHHHHHHHSEEETTTTTCTHHHHHTTEEEECCCHHHHHHHHHHHHHHSCCCC
T ss_pred             hhccCC-CccHHHHHHHHhCCCHHHHHHHHHHHHhcCCeecccchhHHHHHhhcceEEEECHHHHHHHHHHHHHHcCEEE
Confidence            211110 100000                         0             0012357999999999999999999999


Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcccc
Q psy14801        285 GGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK  322 (404)
Q Consensus       285 ~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~  322 (404)
                      +|+||.+++++.++.   .++.++|++.|+++.||.+.
T Consensus       408 dPhtAva~aaa~~~~---~~~~~~V~l~Ta~p~Kf~~~  442 (487)
T 3v7n_A          408 DTHTADGLKVAREHL---RPGVPMVVLETAQPIKFGES  442 (487)
T ss_dssp             CHHHHHHHHHHTTSC---CTTSCEEEEECBCGGGGHHH
T ss_pred             ChhHHHHHHHHHHhh---CCCCcEEEEecCCccccHHH
Confidence            999999999976643   35788999999999887543

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.87  E-value=4.7e-23  Score=209.24  Aligned_cols=241  Identities=23%  Similarity=0.315  Sum_probs=163.1

Q ss_pred             CcEee-cCCCCCCChhhHHhhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccc-
Q psy14801        151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQ-  224 (404)
Q Consensus       151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~-  224 (404)
                      ..+|+ .|+.||++|.|  +|.+..++.++..    +|+..||++++||  +|+++|+.++..|+++++|+|...+... 
T Consensus        77 ~~i~~K~E~~~ptGS~K--~R~a~~~i~~a~~~g~~~~g~~vv~~ssGN--~g~a~A~~a~~~G~~~~iv~p~~~~~~k~  152 (527)
T 3pc3_A           77 CEMYAKCEFLNPGGSVK--DRIGYRMVQDAEEQGLLKPGYTIIEPTSGN--TGIGLAMACAVKGYKCIIVMPEKMSNEKV  152 (527)
T ss_dssp             SEEEEEEGGGSTTSBTT--HHHHHHHHHHHHHHTCCCTTCEEEEECSSH--HHHHHHHHHHHHTCEEEEEEETTSCHHHH
T ss_pred             cEEEEEeccCCCCCCHH--HHHHHHHHHHHHHcCCCCCCCEEEEeCCCH--HHHHHHHHHHHhCCeEEEEEcCCCCHHHH
Confidence            35666 89999999999  9999999887652    3667889999999  9999999999999999999999864321 


Q ss_pred             ------cCCCCCCCCCCCccccccC---CCCcccccccCccccCcEEecChHHHH--HHHHHHHHhcC-----cEeccch
Q psy14801        225 ------PQSLNDVPENQISYNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF--LMARRLIKSEG-----LLVGGSS  288 (404)
Q Consensus       225 ------~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~--~~~~~l~~~~g-----i~~~~~t  288 (404)
                            +..+...+... .......   ....+........+.++|.+..++.+.  .++.|++++.+     |++..||
T Consensus       153 ~~~~~~GA~v~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~n~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~  231 (527)
T 3pc3_A          153 SALRTLGAKIIRTPTEA-AYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDMIVVSAGT  231 (527)
T ss_dssp             HHHHHTTCEEEEECTTS-CTTSTTSHHHHHHHHHHHSSSEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCCSEEEEECSS
T ss_pred             HHHHHCCCEEEEeCCCC-CcccHHHHHHHHHHHHHhCCCcEecCCCCCcchHHHHHHHHHHHHHHhcCCCCCEEEEecCc
Confidence                  11111000000 0000000   000000000011122343333334442  34567777653     8899999


Q ss_pred             hhHHHHHHHHHHhcCCCCeEEEEecCCCCCc-------------cccccch--------hHHhhcCccCcHHHHHH----
Q psy14801        289 GTAMHVACQAAKSLRPDQRCVVILADGVRNY-------------LTKFISD--------EWMIEKGFLDEAEELEE----  343 (404)
Q Consensus       289 g~tlag~~~~lk~~~~~~~vv~v~~~~~~~~-------------~~~~~~~--------~~~~~~~~~~~~~~~~~----  343 (404)
                      |++++|+.+.+|+..|+.+|++|++.+...+             ...+++.        ....+..+.++|++++.    
T Consensus       232 GG~~~G~~~~~k~~~p~~~vigve~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~p~~~~~~~~d~~~~V~d~e~~~a~r~  311 (527)
T 3pc3_A          232 AGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVEGIGYDFPPTVFDDTVVDVWTKIGDSDCFPMSRR  311 (527)
T ss_dssp             SHHHHHHHHHHHHHCTTSEEEEEEETTCCCSSSGGGGCCSCCCCSCCSCCCSSCCTTCCGGGCCEEEEECGGGTHHHHHH
T ss_pred             cHHHHHHHHHHHHhCCCCEEEEEecCCcccccchhhcCCCCCceeccccCCCCCCcccchhhCcEEEEECHHHHHHHHHH
Confidence            9999999999999999999999999765321             1111111        11223344566655544    


Q ss_pred             ---------hccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhccCCHHHHHHcCCCCc
Q psy14801        344 ---------MIHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDE  396 (404)
Q Consensus       344 ---------g~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~~~~~~w~~~~~~~~~  396 (404)
                               +.|||++++|++++++++.++++||+|+||+|+||++++|+++|+.+++|..+
T Consensus       312 l~~~eGi~~~pssa~alaaal~~~~~~~~~~~vv~i~~d~g~ryls~~~~~~~l~~rg~~~~  373 (527)
T 3pc3_A          312 LNAEEGLLCGGSSGGAMHAALEHARKLKKGQRCVVILPDGIRNYMTKFVSDNWMEARNFKEP  373 (527)
T ss_dssp             HHHHHCCCBCHHHHHHHHHHHHHHTTCCTTCEEEEEECBBGGGGTTTTTSHHHHHHTTSSCC
T ss_pred             HHHHcCceEcHHHHHHHHHHHHHHHHcCCCCeEEEEEcCcchhhHhhhhcHHHHHhcCCccc
Confidence                     23899999999999998888999999999999999999999999999998754

>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*

Probab=99.86  E-value=2.8e-22  Score=189.53  Aligned_cols=237  Identities=14%  Similarity=0.169  Sum_probs=151.9

Q ss_pred             CCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccc
Q psy14801        150 KNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQ  224 (404)
Q Consensus       150 ~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~  224 (404)
                      +..+|+ .|+.||++|.|  +|.+..++.++..    +++..||++||||  +|+++|+.++..|+++++|+|.+.+...
T Consensus        24 g~~v~~K~E~~~ptGSfK--~R~a~~~i~~a~~~g~~~~g~~vv~~ssGN--~g~a~A~~a~~~G~~~~iv~p~~~~~~k   99 (303)
T 2v03_A           24 GSEVWLKLEGNNPAGSVK--DRAALSMIVEAEKRGEIKPGDVLIEATSGN--TGIALAMIAALKGYRMKLLMPDNMSQER   99 (303)
T ss_dssp             SCEEEEEEGGGSTTSBTH--HHHHHHHHHHHHHTTCCCTTCEEEEECSSH--HHHHHHHHHHHHTCEEEEEEETTSCHHH
T ss_pred             CCEEEEEeccCCCCCCcH--HHHHHHHHHHHHHcCCCCCCCEEEEECCcH--HHHHHHHHHHHcCCcEEEEECCCCCHHH
Confidence            345776 89999999999  9999999987742    2557889999999  9999999999999999999998864321


Q ss_pred             cCCCCCCCCCCCccc---cccC---CCCcccccccCccccCcEEecChHHH--HHHHHHHHHhc-----CcEeccchhhH
Q psy14801        225 PQSLNDVPENQISYN---EVEG---IGYSFAATTLDRNVIDQWGKCGDKDT--FLMARRLIKSE-----GLLVGGSSGTA  291 (404)
Q Consensus       225 ~~~~~~~~~~~~~~~---~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~--~~~~~~l~~~~-----gi~~~~~tg~t  291 (404)
                      ...+...........   ....   ....+....... +.+++.+..+.+.  ...+.|++++.     .|++..|||++
T Consensus       100 ~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~  178 (303)
T 2v03_A          100 RAAMRAYGAELILVTKEQGMEGARDLALEMANRGEGK-LLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGT  178 (303)
T ss_dssp             HHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHTTSCE-ECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHH
T ss_pred             HHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCc-ccCCcCChhhHHHhcCCcHHHHHHHhCCCCCEEEEEeCccHh
Confidence            111111111000000   0000   000000000001 2233322222332  13356676654     38888899999


Q ss_pred             HHHHHHHHHhcCCCCeEEEEecCCCCCc----------cccccchhHHhhcCccCcHHHHHHh-------------ccch
Q psy14801        292 MHVACQAAKSLRPDQRCVVILADGVRNY----------LTKFISDEWMIEKGFLDEAEELEEM-------------IHSG  348 (404)
Q Consensus       292 lag~~~~lk~~~~~~~vv~v~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~g-------------~SsG  348 (404)
                      ++|+.+.+|+..|..+|+.|++.+...+          .+..+... ..+..+.++|+++..+             .|||
T Consensus       179 ~~Gi~~~~k~~~p~~~vigve~~~~~~~~~~~gl~~~~~~~~~~~~-~~d~~~~V~d~e~~~a~~~l~~~~gi~~~pssa  257 (303)
T 2v03_A          179 ITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNAS-LVDEVLDIHQRDAENTMRELAVREGIFCGVSSG  257 (303)
T ss_dssp             HHHHHHHHHTSSSCCEEEEEEECTTCCCTTCCCCCGGGCCTTCCGG-GCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEEcCCCCcccccCCcCCCCCCCcccchH-HCCEEEEECHHHHHHHHHHHHHHcCceEcHHHH
Confidence            9999999999889999999999765322          11111111 2234456777766553             3889


Q ss_pred             hHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhccCCHHHHHHcCC
Q psy14801        349 TAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGF  393 (404)
Q Consensus       349 a~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~~~~~~w~~~~~~  393 (404)
                      ++++++++++++. ++++||+|+||+|.||++++|+++|+.++++
T Consensus       258 ~alaa~~~~~~~~-~~~~vv~i~tg~~~ky~~~~~~~~~~~~~~~  301 (303)
T 2v03_A          258 GAVAGALRVAAAN-PDAVVVAIICDRGDRYLSTGVFGEEHFSQGA  301 (303)
T ss_dssp             HHHHHHHHHHHHS-TTCEEEEEECBBSGGGGGGTTTCC-------
T ss_pred             HHHHHHHHHHHHC-CCCeEEEEECCCCcccccchhcHHHHHhccC
Confidence            9999999998876 7899999999999999999888899998876

>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}

Probab=99.85  E-value=1.6e-22  Score=197.73  Aligned_cols=244  Identities=14%  Similarity=0.150  Sum_probs=157.7

Q ss_pred             HHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC----cC-EEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC
Q psy14801        146 ASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK----VD-MIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG  219 (404)
Q Consensus       146 ~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~----~~-~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~  219 (404)
                      .+..+..+|+ .|+.||.+|.|  +|.+..++.++.++    |+ .+||++|+||  +|+++|+.++..|+++++|+|++
T Consensus       133 s~~~g~~I~lK~E~lnptGSfK--dRgA~~~i~~A~~~G~l~~g~~~VV~aSsGN--hG~AlA~aAa~~Gl~~~IvmP~~  208 (430)
T 4aec_A          133 AKGCVANIAAKLEIMEPCCSVK--DRIGYSMVTDAEQKGFISPGKSVLVEPTSGN--TGIGLAFIAASRGYRLILTMPAS  208 (430)
T ss_dssp             GTTCSSEEEEEEGGGSTTSBTT--HHHHHHHHHHHHHTTSCCTTTCEEEEECSSH--HHHHHHHHHHHHTCEEEEEEETT
T ss_pred             hhhcCCeEEEEECCCCCCCCHH--HHHHHHHHHHHHHcCCCCCCCcEEEEECCCH--HHHHHHHHHHHhCCEEEEEEcCC
Confidence            3333446777 89999999999  99999999887532    33 5788999999  99999999999999999999998


Q ss_pred             CcccccCCCCCCCCCCCccc---cccC---CCCcccccccCccccCcEEecChHHH--HHHHHHHHHhcC-----cEecc
Q psy14801        220 SILAQPQSLNDVPENQISYN---EVEG---IGYSFAATTLDRNVIDQWGKCGDKDT--FLMARRLIKSEG-----LLVGG  286 (404)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~---~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~--~~~~~~l~~~~g-----i~~~~  286 (404)
                      .+......+...+.......   ...+   ....+....-...+++++.+..++.+  ..++.||+++.+     |++..
T Consensus       209 ~s~~k~~~~r~~GAeVv~v~~~~~~~~a~~~a~el~~~~~~~~~i~~~~np~~~~aG~~T~a~EI~eQl~~~~D~vVvpv  288 (430)
T 4aec_A          209 MSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGI  288 (430)
T ss_dssp             SCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHSTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTSCEEEEEEEC
T ss_pred             CCHHHHHHHHHCCCEEEEECCCCChHHHHHHHHHHHHhcCCcEEecCCCCccHHHHHHHHHHHHHHHHcCCCCCEEEEeC
Confidence            64321111111111100000   0000   00000000001122233323222222  234567777653     88899


Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEecCCCCCc--------ccccc---------chhHHhhcCccCcHHHHHHh-----
Q psy14801        287 SSGTAMHVACQAAKSLRPDQRCVVILADGVRNY--------LTKFI---------SDEWMIEKGFLDEAEELEEM-----  344 (404)
Q Consensus       287 ~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~g-----  344 (404)
                      |||++++|+.+.+|+..|+.+|+.|++.+...+        ...++         ... ..|..+.++|+++.++     
T Consensus       289 G~GGtlaGi~~~lk~~~p~~kVigVep~~s~~l~~g~~~~~~i~Gl~~~~~p~~l~~~-~vd~~v~Vsd~ea~~a~r~La  367 (430)
T 4aec_A          289 GTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQK-IMDEVIAISSEEAIETAKQLA  367 (430)
T ss_dssp             SSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCGGGTCCCCCCSCTTSCCSSCCTTCCTT-TCSEEEEECHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCCCCEEEEEEeCCCcHhhCCCccceeehhccCCCCcHHHHHH-hCCeEEEECHHHHHHHHHHHH
Confidence            999999999999999999999999998653211        11111         111 2233455777766552     


Q ss_pred             --------ccchhHHHHHHHHHHhc-CCCCeEEEEEcCCCcchhhccCCHHHHHHcCCC
Q psy14801        345 --------IHSGTAMHVACQAAKSL-RPDQRCVVILADGVRNYLTKFISDEWMIEKGFL  394 (404)
Q Consensus       345 --------~SsGa~~~~a~~~~~~~-~~~~~iv~i~~D~g~rYl~~~~~~~w~~~~~~~  394 (404)
                              .|||++++++++++++. .++++||+|+||+|+||++++|.++|+++.+..
T Consensus       368 ~~eGi~vepssGaa~aAal~la~~~~~~g~~VV~Il~d~G~rylst~~~~~~~~~~~~~  426 (430)
T 4aec_A          368 LKEGLMVGISSGAAAAAAIKVAKRPENAGKLIAVVFPSFGERYLSTPLFQSIREEVEKM  426 (430)
T ss_dssp             HHHCCCBCHHHHHHHHHHHHHTTSGGGTTCEEEEEECBBGGGGTTSHHHHHHHHHC---
T ss_pred             HHCCCEEehHHHHHHHHHHHHHHhcCCCcCeEEEEECCCCccccchhhhhhhhhhhhcC
Confidence                    38999999999998763 378999999999999999998888999876653

>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*

Probab=99.84  E-value=2.2e-21  Score=185.60  Aligned_cols=239  Identities=14%  Similarity=0.152  Sum_probs=154.1

Q ss_pred             CCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC----CcCE-EEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccc
Q psy14801        150 KNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG----KVDM-IVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILA  223 (404)
Q Consensus       150 ~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~----~~~~-vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~  223 (404)
                      +..+|+ .|+.||++|.|  +|.+..++.++.+    +++. +||++||||  +|+++|+.++..|+++++|+|++.+..
T Consensus        34 g~~i~~K~E~~~ptGSfK--~R~a~~~i~~a~~~g~l~~g~~vvv~aSsGN--~g~alA~aa~~~G~~~~iv~p~~~~~~  109 (334)
T 3tbh_A           34 KAKVVLKMECENPMASVK--DRLGFAIYDKAEKEGKLIPGKSIVVESSSGN--TGVSLAHLGAIRGYKVIITMPESMSLE  109 (334)
T ss_dssp             SSEEEEEEGGGSTTSBTH--HHHHHHHHHHHHHTTSCCTTTCEEEEECSSH--HHHHHHHHHHHHTCEEEEEEETTSCHH
T ss_pred             CCEEEEEeCCCCCccCcH--HHHHHHHHHHHHHcCCCCCCCeEEEEeCCCH--HHHHHHHHHHHhCCCEEEEECCCCCHH
Confidence            345666 89999999999  9999999887753    2444 469999999  999999999888999999999986432


Q ss_pred             ccCCCCCCCCCCCccc---cccC---CCCcccccccCccccCcEEecChHHHH--HHHHHHHHhcC-----cEeccchhh
Q psy14801        224 QPQSLNDVPENQISYN---EVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF--LMARRLIKSEG-----LLVGGSSGT  290 (404)
Q Consensus       224 ~~~~~~~~~~~~~~~~---~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~--~~~~~l~~~~g-----i~~~~~tg~  290 (404)
                      ....+...........   ...+   ....+........+++++.+..+.+..  ..+.||+++.+     |++..|||+
T Consensus       110 k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~i~~~~np~n~~~g~~t~~~Ei~~q~~~~~d~vv~pvG~GG  189 (334)
T 3tbh_A          110 RRCLLRIFGAEVILTPAALGMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTGG  189 (334)
T ss_dssp             HHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEEECCTTTCHHHHHHHHHTHHHHHHHHTTSCCSEEEEECSSSH
T ss_pred             HHHHHHHCCCEEEEECCCCCchHHHHHHHHHHHhCCCEEECCccCChhHHHHHHHHHHHHHHHHhCCCCCEEEeccCCcH
Confidence            1111111111100000   0000   000000000011222332222223332  35677877743     888899999


Q ss_pred             HHHHHHHHHHhcCCCCeEEEEecCCCCCcc-----------------ccccchhHHhhcCccCcHHHHHHh---------
Q psy14801        291 AMHVACQAAKSLRPDQRCVVILADGVRNYL-----------------TKFISDEWMIEKGFLDEAEELEEM---------  344 (404)
Q Consensus       291 tlag~~~~lk~~~~~~~vv~v~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~g---------  344 (404)
                      +++|+.+.+|+..|+.+|+.|++.+...+.                 +..+... ..+..+.++|+++.++         
T Consensus       190 ~~aGi~~~~k~~~p~~~vigVe~~~~~~~~~g~~~~~~~~gi~~~~~~~~~~~~-~~d~~~~V~d~e~~~a~~~l~~~eg  268 (334)
T 3tbh_A          190 TLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGIGPGFVPDVLDRS-LIDEVLCVAGDDAIETALKLTRSDG  268 (334)
T ss_dssp             HHHHHHHHHHHTTCCCEEEEEEETTSCTTTTCCCCCCSCTTSCCSSCCTTCCGG-GCSEEEEECHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHhCCCCEEEEEeeCCchHhhCCCcCCeecCCCCCCcCCHHHHHH-hCCEEEEECHHHHHHHHHHHHHHcC
Confidence            999999999999999999999986643211                 1111111 2233455777776553         


Q ss_pred             ----ccchhHHHHHHHHHHh-cCCCCeEEEEEcCCCcchhhc-cCCHHHHHHcCC
Q psy14801        345 ----IHSGTAMHVACQAAKS-LRPDQRCVVILADGVRNYLTK-FISDEWMIEKGF  393 (404)
Q Consensus       345 ----~SsGa~~~~a~~~~~~-~~~~~~iv~i~~D~g~rYl~~-~~~~~w~~~~~~  393 (404)
                          .|||++++++++++++ +.++++||+|+||+|+||+|+ +|++.|.+-..+
T Consensus       269 i~~epssgaa~aa~~~~~~~~~~~g~~Vv~v~t~~g~ky~~~~~~~~~~~~~~~~  323 (334)
T 3tbh_A          269 VFCGFSGGANVYAALKIAERPEMEGKTIVTVIPSFGERYLSTTLYRSVRDEVSSL  323 (334)
T ss_dssp             CCBCHHHHHHHHHHHHHHHSGGGTTCEEEEEECBBGGGGTTSGGGTHHHHC----
T ss_pred             eEEcHHHHHHHHHHHHHHHhccCCcCeEEEEECCCCccccCchhhhhhHHHhhhc
Confidence                3899999999999886 468899999999999999998 788888765544

>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A

Probab=99.84  E-value=1.2e-21  Score=186.14  Aligned_cols=236  Identities=20%  Similarity=0.193  Sum_probs=144.4

Q ss_pred             CCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccc
Q psy14801        150 KNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQ  224 (404)
Q Consensus       150 ~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~  224 (404)
                      +..+|+ .|+.||.+|.|  +|.+..++.++.+    +++..||++++||  +|+++|+.++..|+++++|+|.+.+...
T Consensus        30 g~~i~~K~E~~~ptgSfK--~R~a~~~l~~a~~~g~~~~g~~vv~assGN--~g~alA~~a~~~G~~~~iv~p~~~~~~k  105 (313)
T 2q3b_A           30 VADIVAKLEFFNPANSVK--DRIGVAMLQAAEQAGLIKPDTIILEPTSGN--TGIALAMVCAARGYRCVLTMPETMSLER  105 (313)
T ss_dssp             CSEEEEEEGGGSTTSBTH--HHHHHHHHHHHHHTTCCCTTCEEEEECSSH--HHHHHHHHHHHHTCEEEEEEETTSCHHH
T ss_pred             CcEEEEEehhcCCCCcHH--HHHHHHHHHHHHHcCCCCCCCEEEEeCCCH--HHHHHHHHHHHcCCcEEEEECCCCCHHH
Confidence            345777 89999999999  9999999987752    2456788899999  9999999999999999999998864321


Q ss_pred             cCCCCCCCCCCCccc---cccC---CCCcccccccCccccCcEEecChHHH--HHHHHHHHHhc-----CcEeccchhhH
Q psy14801        225 PQSLNDVPENQISYN---EVEG---IGYSFAATTLDRNVIDQWGKCGDKDT--FLMARRLIKSE-----GLLVGGSSGTA  291 (404)
Q Consensus       225 ~~~~~~~~~~~~~~~---~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~--~~~~~~l~~~~-----gi~~~~~tg~t  291 (404)
                      ...+...........   ....   ....+....-...+++++.+..+.+.  ...+.|++++.     .|++..|||++
T Consensus       106 ~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~~~~~~~~t~~~Ei~~q~~~~~d~vvvpvG~GG~  185 (313)
T 2q3b_A          106 RMLLRAYGAELILTPGADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTGGT  185 (313)
T ss_dssp             HHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHH
T ss_pred             HHHHHHCCCEEEEeCCCCCHHHHHHHHHHHHHhCCCEEeCCCCCChhhHHHHHHHHHHHHHHHcCCCCCEEEEccCcchh
Confidence            111111111100000   0000   00000000000012233222222222  12356777664     38889999999


Q ss_pred             HHHHHHHHHhcCCCCeEEEEecCCCCCcc--------ccccc--------hhHHhhcCccCcHHHHHHh-----------
Q psy14801        292 MHVACQAAKSLRPDQRCVVILADGVRNYL--------TKFIS--------DEWMIEKGFLDEAEELEEM-----------  344 (404)
Q Consensus       292 lag~~~~lk~~~~~~~vv~v~~~~~~~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~g-----------  344 (404)
                      ++|+.+.+|+..|+.+|++|++.+...+.        ...+.        +....|..+.++|+++..+           
T Consensus       186 ~~Gi~~~~k~~~~~~~vi~ve~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~  265 (313)
T 2q3b_A          186 ITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEIITVGNEDALNVARRLAREEGLL  265 (313)
T ss_dssp             HHHHHHHHHHHCTTCEEEEEEETTSCTTTTCCCCCCCCTTSCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCcccCCcCCCCCChhhhHhhccEEEEECHHHHHHHHHHHHHHcCce
Confidence            99999999998899999999997653220        01111        0112233455777766553           


Q ss_pred             --ccchhHHHHHHHHHHhcC-CCCeEEEEEcCCCcchhhccCCHHHHH
Q psy14801        345 --IHSGTAMHVACQAAKSLR-PDQRCVVILADGVRNYLTKFISDEWMI  389 (404)
Q Consensus       345 --~SsGa~~~~a~~~~~~~~-~~~~iv~i~~D~g~rYl~~~~~~~w~~  389 (404)
                        .|||++++++++++++.. ++++||+|+||+|.||++++|+++||+
T Consensus       266 ~epssa~alaa~~~~~~~~~~~~~~vv~v~~~~g~ky~~~~~~~~~~~  313 (313)
T 2q3b_A          266 VGISSGAATVAALQVARRPENAGKLIVVVLPDFGERYLSTPLFADVAD  313 (313)
T ss_dssp             BCHHHHHHHHHHHHHHTCGGGTTCEEEEEECBBSGGGC----------
T ss_pred             EchHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccchhhhhhhC
Confidence              389999999999987642 688999999999999999999999984

>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*

Probab=99.82  E-value=9.7e-22  Score=188.81  Aligned_cols=238  Identities=11%  Similarity=0.111  Sum_probs=155.8

Q ss_pred             CCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccc
Q psy14801        150 KNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQ  224 (404)
Q Consensus       150 ~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~  224 (404)
                      +..+|+ .|+.||++|.|  +|.+..++.++.+    +++..||++||||  +|+++|+.++..|+++++|+|.+.+...
T Consensus        41 g~~v~~K~E~~~ptGSfK--dR~a~~~l~~a~~~g~~~~g~~vv~aSsGN--~g~alA~aa~~~G~~~~iv~p~~~~~~k  116 (343)
T 2pqm_A           41 GTRILVKLEYFNPMSSVK--DRVGFNIVYQAIKDGRLKPGMEIIESTSGN--TGIALCQAGAVFGYRVNIAMPSTMSVER  116 (343)
T ss_dssp             TCEEEEEEGGGSTTSBTH--HHHHHHHHHHHHHHTSSCTTCEEEEECSSH--HHHHHHHHHHHHTCCEEEEEETTSCHHH
T ss_pred             CcEEEEEeccCCCCCChH--HHHHHHHHHHHHHcCCCCCCCEEEEECCcH--HHHHHHHHHHHcCCCEEEEECCCCCHHH
Confidence            346777 89999999999  9999998887652    3556889999999  9999999999999999999998864321


Q ss_pred             cCCCCCCCCCCCccc---cccC---CCCcccccccCc-cccCcEEecChHHH-H-HHHHHHHHhcC-----cEeccchhh
Q psy14801        225 PQSLNDVPENQISYN---EVEG---IGYSFAATTLDR-NVIDQWGKCGDKDT-F-LMARRLIKSEG-----LLVGGSSGT  290 (404)
Q Consensus       225 ~~~~~~~~~~~~~~~---~~~~---i~~~~~~~~~~~-~~~~~~~~v~d~e~-~-~~~~~l~~~~g-----i~~~~~tg~  290 (404)
                      ...+...........   ....   ....+....-.. .+++++.+..+.+. + ..+ |++++.+     |++..|||+
T Consensus       117 ~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~~~~y~~~~~~~n~~n~~~g~~t~~-Ei~~q~~~~~d~vvvpvG~GG  195 (343)
T 2pqm_A          117 QMIMKAFGAELILTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDGEVDIVVSAVGTSG  195 (343)
T ss_dssp             HHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHSTTTEEECCTTTCHHHHHHHHHHHH-HHHHHTTTCEEEEEEECSSSH
T ss_pred             HHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEECCCCCChhHHHHHHHHHH-HHHHHcCCCCCEEEEecCCch
Confidence            111111111100000   0000   000000000000 11222222222323 2 344 7777643     888999999


Q ss_pred             HHHHHHHHHHhcCCCCeEEEEecCCCCCcc--------ccc---------cchhHHhhcCccCcHHHHHHh---------
Q psy14801        291 AMHVACQAAKSLRPDQRCVVILADGVRNYL--------TKF---------ISDEWMIEKGFLDEAEELEEM---------  344 (404)
Q Consensus       291 tlag~~~~lk~~~~~~~vv~v~~~~~~~~~--------~~~---------~~~~~~~~~~~~~~~~~~~~g---------  344 (404)
                      +++|+.+++|+..|+.+|++|++.+...+.        ...         +... ..+..+.++|+++.++         
T Consensus       196 ~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~-~~d~~~~Vsd~e~~~a~~~l~~~~g  274 (343)
T 2pqm_A          196 TVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIPDIYKKE-FVDEIIPIKTQDAWKMARAVVKYDG  274 (343)
T ss_dssp             HHHHHHHHHHHHCTTCEEEEEEEGGGCTTTTCCCCCCCCTTCCCSSCCTTCCGG-GCCEEEEECHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHcCCCCEEEEEecCCCcccccCCCCCeecCccCCCCCCHHHHHH-hCCeEEEECHHHHHHHHHHHHHHhC
Confidence            999999999998899999999986542111        111         1111 2234455777666553         


Q ss_pred             ----ccchhHHHHHHHHHHhc-CCCCeEEEEEcCCCcchhhccCCHHHHHHcCC
Q psy14801        345 ----IHSGTAMHVACQAAKSL-RPDQRCVVILADGVRNYLTKFISDEWMIEKGF  393 (404)
Q Consensus       345 ----~SsGa~~~~a~~~~~~~-~~~~~iv~i~~D~g~rYl~~~~~~~w~~~~~~  393 (404)
                          .|||++++++++++++. .++++||+|+||+|.||++++|+++|++.+++
T Consensus       275 i~~epssa~alaa~~~~~~~~~~~~~~vv~i~tg~g~ky~~~~~~~~~~~~~~~  328 (343)
T 2pqm_A          275 IMCGMSSGAAILAGLKEAEKPENEGKTIVIIVPSCGERYLSTDLYKIKDEGTKI  328 (343)
T ss_dssp             CCBCHHHHHHHHHHHHHHTSGGGTTCEEEEEECBBGGGGTTSSTTTSCCCSCHH
T ss_pred             CeEchhHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCccccchhhhhhHhhcCCC
Confidence                38999999999988764 47899999999999999999999999977665

>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*

Probab=99.82  E-value=4.4e-21  Score=182.85  Aligned_cols=240  Identities=15%  Similarity=0.160  Sum_probs=156.5

Q ss_pred             CCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC----cC-EEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccc
Q psy14801        150 KNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK----VD-MIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILA  223 (404)
Q Consensus       150 ~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~----~~-~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~  223 (404)
                      +..+|+ .|+.||++|.|  +|.+..++.++.++    |+ ..||++++||  +|+++|+.++..|+++++|+|.+.+..
T Consensus        29 g~~v~~K~E~~~ptGSfK--~R~a~~~l~~a~~~G~~~~~~~~vv~assGN--~g~alA~aa~~~G~~~~iv~p~~~~~~  104 (322)
T 1z7w_A           29 VGRVAAKLEMMEPCSSVK--DRIGFSMISDAEKKGLIKPGESVLIEPTSGN--TGVGLAFTAAAKGYKLIITMPASMSTE  104 (322)
T ss_dssp             SSEEEEEEGGGSTTSBTH--HHHHHHHHHHHHHTTSCCTTTCEEEEECSSH--HHHHHHHHHHHHTCEEEEEEETTSCHH
T ss_pred             CceEEEEecccCCCCchH--HHHHHHHHHHHHHcCCCCCCCCEEEEeCCCH--HHHHHHHHHHHcCCCEEEEeCCCCCHH
Confidence            346777 89999999999  99999998877532    33 4788899999  999999999999999999999886432


Q ss_pred             ccCCCCCCCCCCCcccc---ccC---CCCcccccccCccccCcEEecChHHHH--HHHHHHHHhcC-----cEeccchhh
Q psy14801        224 QPQSLNDVPENQISYNE---VEG---IGYSFAATTLDRNVIDQWGKCGDKDTF--LMARRLIKSEG-----LLVGGSSGT  290 (404)
Q Consensus       224 ~~~~~~~~~~~~~~~~~---~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~--~~~~~l~~~~g-----i~~~~~tg~  290 (404)
                      ....+............   ...   ....+.....+..+++++.+..+++..  ..+.|++++.+     |++..|||+
T Consensus       105 k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~i~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG  184 (322)
T 1z7w_A          105 RRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG  184 (322)
T ss_dssp             HHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSH
T ss_pred             HHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHhCCCeEeCCCCCChhHHHHHHHHHHHHHHHHhcCCCCEEEEecCccH
Confidence            11111111111000000   000   000000000011122333333333332  34567777653     888889999


Q ss_pred             HHHHHHHHHHhcCCCCeEEEEecCCCCCcc--------ccc---------cchhHHhhcCccCcHHHHHHh---------
Q psy14801        291 AMHVACQAAKSLRPDQRCVVILADGVRNYL--------TKF---------ISDEWMIEKGFLDEAEELEEM---------  344 (404)
Q Consensus       291 tlag~~~~lk~~~~~~~vv~v~~~~~~~~~--------~~~---------~~~~~~~~~~~~~~~~~~~~g---------  344 (404)
                      +++|+.+.+|+..|..+|+.|++.+...+.        ...         +... ..+..+.++|+++...         
T Consensus       185 ~~~Gi~~~~k~~~p~~~vigve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~-~~~~~~~V~d~e~~~a~~~l~~~~g  263 (322)
T 1z7w_A          185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVD-LIDEVVQVSSDESIDMARQLALKEG  263 (322)
T ss_dssp             HHHHHHHHHHHHCTTCEEEEEEEGGGCGGGTCCCCCCSCTTSCCSSCCTTCCGG-GCSEEEEECHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHcCCCCEEEEEecCCCccccCCCCCCcccCcCcCCCCChhhhHH-hCCEEEEECHHHHHHHHHHHHHHcC
Confidence            999999999998899999999986542210        011         1111 2233455777665542         


Q ss_pred             ----ccchhHHHHHHHHHHhc-CCCCeEEEEEcCCCcchhhccCCHHHHHHcCCC
Q psy14801        345 ----IHSGTAMHVACQAAKSL-RPDQRCVVILADGVRNYLTKFISDEWMIEKGFL  394 (404)
Q Consensus       345 ----~SsGa~~~~a~~~~~~~-~~~~~iv~i~~D~g~rYl~~~~~~~w~~~~~~~  394 (404)
                          .|||++++++++++++. .++++||+|+||+|.||++++|+++|+.+.+..
T Consensus       264 i~~~pssga~~aaa~~~~~~~~~~~~~vv~i~tg~g~k~~~~~~~~~~~~~~~~~  318 (322)
T 1z7w_A          264 LLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERYLSTVLFDATRKEAEAM  318 (322)
T ss_dssp             CCBCHHHHHHHHHHHHHHTSGGGTTCEEEEEECBBGGGGTTSGGGHHHHHHHHTC
T ss_pred             ceEchhHHHHHHHHHHHHHhcCCCCCeEEEEECCCCcccccchhhhHHHHhcccc
Confidence                38899999999988764 368899999999999999999999999776554

>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*

Probab=99.82  E-value=2.2e-21  Score=184.93  Aligned_cols=230  Identities=13%  Similarity=0.178  Sum_probs=149.9

Q ss_pred             CcEee-cCCCCCCChhhHHhhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccc-
Q psy14801        151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQ-  224 (404)
Q Consensus       151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~-  224 (404)
                      ..+|+ .|+.||++|.|  +|.+..++.++.+    +|+..||+++|||  +|+++|+.++..|+++++|+|.+.+... 
T Consensus        37 ~~v~~K~E~~~ptGSfK--~R~a~~~l~~a~~~g~l~~~~~vv~aSsGN--~g~alA~aa~~~G~~~~iv~p~~~~~~k~  112 (325)
T 3dwg_A           37 VRLWAKLEDRNPTGSIK--DRPAVRMIEQAEADGLLRPGATILEPTSGN--TGISLAMAARLKGYRLICVMPENTSVERR  112 (325)
T ss_dssp             EEEEEEETTSSTTSBTT--HHHHHHHHHHHHHTTCCCTTCEEEEECSSH--HHHHHHHHHHHHTCEEEEEEESSSCHHHH
T ss_pred             cEEEEEECCCCCCCChH--HHHHHHHHHHHHHcCCCCCCCEEEEeCCcH--HHHHHHHHHHHcCCcEEEEECCCCCHHHH
Confidence            35666 89999999999  9999999987652    2557888999999  9999999999999999999999864321 


Q ss_pred             ------cCCCCCCCCCCCccccccCCCCcccccccCccccCcEEecChHHH--HHHHHHHHHhcC----cEeccchhhHH
Q psy14801        225 ------PQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDT--FLMARRLIKSEG----LLVGGSSGTAM  292 (404)
Q Consensus       225 ------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~--~~~~~~l~~~~g----i~~~~~tg~tl  292 (404)
                            ...+...+... ...........+....-+..+++++.+..+.+.  ...+.||+++.+    |++..|||+++
T Consensus       113 ~~~~~~GA~V~~~~~~~-~~~~~~~~a~~l~~~~~~~~~~~~~~np~~~~~g~~t~~~Ei~~q~~~~d~vv~pvG~GG~~  191 (325)
T 3dwg_A          113 QLLELYGAQIIFSAAEG-GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADLPEITHFVAGLGTTGTL  191 (325)
T ss_dssp             HHHHHHTCEEEEECSTT-THHHHHHHHHHHHHHCTTSBCCCTTTCHHHHHHHHHTHHHHHHHHCTTCCEEEEECSSSHHH
T ss_pred             HHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHhCCCeEeCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEecCchHHH
Confidence                  11111100000 000000000000000000112233322222322  233566766643    88899999999


Q ss_pred             HHHHHHHHhcCCCCeEEEEecCCCCCc----------cccccchhHHhhcCccCcHHHHHHh-------------ccchh
Q psy14801        293 HVACQAAKSLRPDQRCVVILADGVRNY----------LTKFISDEWMIEKGFLDEAEELEEM-------------IHSGT  349 (404)
Q Consensus       293 ag~~~~lk~~~~~~~vv~v~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~g-------------~SsGa  349 (404)
                      +|+...+|+..|+.+|+.|++.+...+          .+..+... ..+..+.++|+++...             .|||+
T Consensus       192 aGi~~~~k~~~p~~~vigVe~~~~~~~~~~~~i~~~~~~~~~~~~-~~d~~~~V~d~e~~~a~~~l~~~egi~~epssa~  270 (325)
T 3dwg_A          192 MGTGRFLREHVANVKIVAAEPRYGEGVYALRNMDEGFVPELYDPE-ILTARYSVGAVDAVRRTRELVHTEGIFAGISTGA  270 (325)
T ss_dssp             HHHHHHHHHHSTTCEEEEEEEECCGGGGCCSSGGGCCCCTTCCGG-GCSEEEEEEHHHHHHHHHHHHHHHCCCBCHHHHH
T ss_pred             HHHHHHHHHhCCCCEEEEEeeCCCcchhccCcccCCcCcccccHh-hCCeEEEECHHHHHHHHHHHHHHcCceechhHHH
Confidence            999999999999999999999764321          11111122 2334456777776553             38999


Q ss_pred             HHHHHHHHHHhc-CCCCe--EEEEEcCCCcchhhc-cCCHH
Q psy14801        350 AMHVACQAAKSL-RPDQR--CVVILADGVRNYLTK-FISDE  386 (404)
Q Consensus       350 ~~~~a~~~~~~~-~~~~~--iv~i~~D~g~rYl~~-~~~~~  386 (404)
                      +++++++++++. .++++  ||+|+||+|+||+|| +|++.
T Consensus       271 a~aa~~~~~~~~~~~g~~~~Vv~i~~g~g~ky~~~~~~~~~  311 (325)
T 3dwg_A          271 VLHAALGVGAGALAAGERADIALVVADAGWKYLSTGAYAGS  311 (325)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEEEECBBGGGGGGGTTTSSC
T ss_pred             HHHHHHHHHHHhccCCCCCeEEEEECCCCccccCchhhcCC
Confidence            999999998764 35667  999999999999999 99863

>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*

Probab=99.81  E-value=1.1e-20  Score=179.72  Aligned_cols=232  Identities=17%  Similarity=0.148  Sum_probs=149.4

Q ss_pred             CcEee-cCCCCCCChhhHHhhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc
Q psy14801        151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP  225 (404)
Q Consensus       151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~  225 (404)
                      ..+|+ .|+.||++|.|  +|.+..++.++.+    +++..||++||||  +|+++|+.++..|+++++|+|.+.+....
T Consensus        26 ~~i~~K~E~~~ptGSfK--~R~a~~~i~~a~~~g~~~~~~~vv~~ssGN--~g~a~A~~a~~~G~~~~iv~p~~~~~~k~  101 (316)
T 1y7l_A           26 GNVVVKIEGRNPSYSVK--CRIGANMVWQAEKDGTLTKGKEIVDATSGN--TGIALAYVAAARGYKITLTMPETMSLERK  101 (316)
T ss_dssp             TCEEEEETTSSGGGBTH--HHHHHHHHHHHHHTTSSCTTCEEEESCCSH--HHHHHHHHHHHHTCCEEEEEETTSCHHHH
T ss_pred             CEEEEEeccCCCCCChH--HHHHHHHHHHHHHcCCCCCCCEEEEeCCcH--HHHHHHHHHHHcCCcEEEEECCCCCHHHH
Confidence            45777 89999999999  9999999987753    2457899999999  99999999999999999999988643211


Q ss_pred             CCCCCCCCCCCc--cc-cccC---CCCcccccccCc-cccCcEEecChHHH-H-HHHHHHHHhc-----CcEeccchhhH
Q psy14801        226 QSLNDVPENQIS--YN-EVEG---IGYSFAATTLDR-NVIDQWGKCGDKDT-F-LMARRLIKSE-----GLLVGGSSGTA  291 (404)
Q Consensus       226 ~~~~~~~~~~~~--~~-~~~~---i~~~~~~~~~~~-~~~~~~~~v~d~e~-~-~~~~~l~~~~-----gi~~~~~tg~t  291 (404)
                      ..+.........  .. ....   ....+....-.. .+++++.+..+.+. + ..+.|++++.     .|++..|||++
T Consensus       102 ~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~  181 (316)
T 1y7l_A          102 RLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGS  181 (316)
T ss_dssp             HHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCEEEEEEECSSSHH
T ss_pred             HHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCCcccc
Confidence            111111111000  00 0000   000000000001 12233323223343 1 2356777664     38888999999


Q ss_pred             HHHHHHHHHhcC-CCCeEEEEecCCCCCc--------------ccccc---------chhHHhhcCccCcHHHHHHh---
Q psy14801        292 MHVACQAAKSLR-PDQRCVVILADGVRNY--------------LTKFI---------SDEWMIEKGFLDEAEELEEM---  344 (404)
Q Consensus       292 lag~~~~lk~~~-~~~~vv~v~~~~~~~~--------------~~~~~---------~~~~~~~~~~~~~~~~~~~g---  344 (404)
                      ++|+.+.+|+.. |+.+|++|++.+...+              ....+         ... ..+..+.++|+++..+   
T Consensus       182 ~~Gi~~~~k~~~~~~~~vi~ve~~~~~~~~~~~~g~~~~~~~~~~~gi~~~~~~~~~~~~-~~d~~~~V~d~e~~~a~~~  260 (316)
T 1y7l_A          182 ITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNLDLS-IIDRVETVDSDTALATARR  260 (316)
T ss_dssp             HHHHHHHHHHTSCCCCEEEEEEETTSCHHHHHHHTCCCCCCCCSCTTSCCSSCCTTCCGG-GCCEEEEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCEEEEEecCCCccccccccCCccCCCCcccCcCCCCCCCchhhHh-hCCEEEEECHHHHHHHHHH
Confidence            999999999988 9999999999765211              01111         111 2233455777666553   


Q ss_pred             ----------ccchhHHHHHHHHHHhcC-CCCeEEEEEcCCCcchhhccCCHHH
Q psy14801        345 ----------IHSGTAMHVACQAAKSLR-PDQRCVVILADGVRNYLTKFISDEW  387 (404)
Q Consensus       345 ----------~SsGa~~~~a~~~~~~~~-~~~~iv~i~~D~g~rYl~~~~~~~w  387 (404)
                                .|||++++++++++++.. ++++||+|+||+|.||++++|+++|
T Consensus       261 l~~~~gi~~epssa~~laa~~~~~~~~~~~~~~vv~i~tg~g~k~~~~~~~~~~  314 (316)
T 1y7l_A          261 LMAEEGILAGISSGAAVAAADRLAKLPEFADKLIVVILPSASERYLSTALFEGI  314 (316)
T ss_dssp             HHHHHCCCBCHHHHHHHHHHHHHHTSGGGTTCEEEEEECBBCSSCCCTTTC---
T ss_pred             HHHhhCCeEcHHHHHHHHHHHHHHHhcCCCCCeEEEEECCCCcccCCccccccc
Confidence                      389999999999987642 6889999999999999999999999

>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*

Probab=99.79  E-value=5e-20  Score=174.21  Aligned_cols=231  Identities=15%  Similarity=0.187  Sum_probs=149.2

Q ss_pred             CCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC----CcCE--EEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcc
Q psy14801        150 KNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG----KVDM--IVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSIL  222 (404)
Q Consensus       150 ~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~----~~~~--vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~  222 (404)
                      +..+|+ .|+.||++|.|  +|.+..++.++.+    +|+.  .||++++||  +|+++|+.++..|+++++|+|.+.+.
T Consensus        23 g~~v~~K~E~~~ptGSfK--~R~a~~~l~~a~~~g~~~~g~~~~vv~assGN--~g~a~A~~a~~~G~~~~i~~p~~~~~   98 (304)
T 1ve1_A           23 MAEVWVKLEGLNPGGSIK--DRPAWYMIKDAEERGILRPGSGQVIVEPTSGN--TGIGLAMIAASRGYRLILTMPAQMSE   98 (304)
T ss_dssp             SCEEEEEEGGGSTTSBTT--HHHHHHHHHHHHHTTSCCTTSCCEEEESCCSH--HHHHHHHHHHHHTCEEEEEEETTCCH
T ss_pred             CCEEEEEecccCCCCcHH--HHHHHHHHHHHHHcCCCCCCCccEEEEeCCcH--HHHHHHHHHHHcCCcEEEEeCCCCCH
Confidence            346777 89999999999  9999999988752    2445  888899999  99999999999999999999988642


Q ss_pred             cccCCCCCCCCCCCc--cc-cccC---CCCcccccccCccccCcEEecChHHHH--HHHHHHHHhcC-----cEeccchh
Q psy14801        223 AQPQSLNDVPENQIS--YN-EVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF--LMARRLIKSEG-----LLVGGSSG  289 (404)
Q Consensus       223 ~~~~~~~~~~~~~~~--~~-~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~--~~~~~l~~~~g-----i~~~~~tg  289 (404)
                      .....+.........  .. ....   ....+ .......+++++.+..+.+.+  ..+.|++++.+     |++..|||
T Consensus        99 ~k~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~l-~~~~~~~~~~~~~n~~~~~g~~~t~~~Ei~~q~~~~~d~vvvpvG~G  177 (304)
T 1ve1_A           99 ERKRVLKAFGAELVLTDPERRMLAAREEALRL-KEELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTG  177 (304)
T ss_dssp             HHHHHHHHTTCEEEEECTTTHHHHHHHHHHHH-HHHHTCBCCCTTTCHHHHHHHHHTHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             HHHHHHHHcCCEEEEECCCCCHHHHHHHHHHH-HhcCCCEeCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEecCCc
Confidence            211111111110000  00 0000   00000 000011122332222222221  22466776643     88888999


Q ss_pred             hHHHHHHHHHHhcCCCCeEEEEecCCCCCcc--------ccc---------cchhHHhhcCccCcHHHHHHh--------
Q psy14801        290 TAMHVACQAAKSLRPDQRCVVILADGVRNYL--------TKF---------ISDEWMIEKGFLDEAEELEEM--------  344 (404)
Q Consensus       290 ~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~--------~~~---------~~~~~~~~~~~~~~~~~~~~g--------  344 (404)
                      ++++|+.+++|+..|..+|++|++.+...+.        ...         +... ..+..+.++|+++.+.        
T Consensus       178 G~~~Gi~~~~k~~~~~~~vi~ve~~~~~~~~~g~~~~~~~~gl~~~~~~~~~~~~-~~d~~~~V~d~e~~~a~~~l~~~~  256 (304)
T 1ve1_A          178 GTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLS-LLDGVIQVWEEDAFPLARRLAREE  256 (304)
T ss_dssp             HHHHHHHHHHHTTCTTCEEEEEEEGGGCTTTTCCCCCCSCTTSCCSSCCTTCCGG-GCSEEEEECHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCcccCCCCCCCCChhhhhh-hCCEEEEECHHHHHHHHHHHHHHh
Confidence            9999999999998899999999986542110        011         1111 2233455777766553        


Q ss_pred             -----ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhc-cCCHH
Q psy14801        345 -----IHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK-FISDE  386 (404)
Q Consensus       345 -----~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~-~~~~~  386 (404)
                           .|||++++++++++++++++++||+|+||+|.||+++ +||++
T Consensus       257 gi~~epssa~a~aa~~~~~~~~~~~~~vv~i~tg~g~ky~~~~~~~~~  304 (304)
T 1ve1_A          257 GLFLGMSSGGIVWAALQVARELGPGKRVACISPDGGWKYLSTPLYAEP  304 (304)
T ss_dssp             CCCBCHHHHHHHHHHHHHHHHHCTTCEEEEEECBBSGGGTTSTTTC--
T ss_pred             CcEEcHHHHHHHHHHHHHHHhcCCCCeEEEEECCCCccCCCcccCCCC
Confidence                 3899999999999887778899999999999999999 89863

>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}

Probab=99.76  E-value=3e-19  Score=169.16  Aligned_cols=227  Identities=17%  Similarity=0.206  Sum_probs=141.1

Q ss_pred             CCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccc
Q psy14801        150 KNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQ  224 (404)
Q Consensus       150 ~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~  224 (404)
                      +..+|+ .|+.||.+|.|  +|.+..++.++.+    +++..||++++||  +|+++|+.++..|+++++|+|.+.+...
T Consensus        28 g~~i~~K~E~~~ptgSfK--~R~a~~~l~~a~~~g~~~~g~~vv~assGN--~g~a~A~~a~~~G~~~~iv~p~~~~~~k  103 (308)
T 2egu_A           28 SADVYLKLEFMNPGSSVK--DRIALAMIEAAEKAGKLKPGDTIVEPTSGN--TGIGLAMVAAAKGYKAVLVMPDTMSLER  103 (308)
T ss_dssp             SCEEEEEEGGGSTTSBTH--HHHHHHHHHHHHHTTCCCTTCEEEEECCHH--HHHHHHHHHHHHTCEEEEEEESCSCHHH
T ss_pred             CCEEEEEecccCCCCChH--HHHHHHHHHHHHHcCCCCCCCEEEEeCCCH--HHHHHHHHHHHcCCCEEEEECCCCCHHH
Confidence            345777 89999999999  9999999987752    2446788899999  9999999999999999999998864221


Q ss_pred             cCCCCCCCCCCC---ccc-------cc----cCCCCcccccccC-ccccCcEEecChHHHHHHHHHHHHhcCcEeccchh
Q psy14801        225 PQSLNDVPENQI---SYN-------EV----EGIGYSFAATTLD-RNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSG  289 (404)
Q Consensus       225 ~~~~~~~~~~~~---~~~-------~~----~~i~~~~~~~~~~-~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg  289 (404)
                      ...+........   ...       .+    ...+. +++.+++ ..++..++.....|++++...  +-+.+++..|||
T Consensus       104 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~~~-~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~--~~d~vvvpvG~G  180 (308)
T 2egu_A          104 RNLLRAYGAELVLTPGAQGMRGAIAKAEELVREHGY-FMPQQFKNEANPEIHRLTTGKEIVEQMGD--QLDAFVAGVGTG  180 (308)
T ss_dssp             HHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHHCC-BCC--------------CHHHHHHHHHTT--CCCEEEEEGGGT
T ss_pred             HHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHHCcC-CcCCcCCChhHHHHHHHHHHHHHHHHcCC--CCCEEEEeeCCc
Confidence            111111111000   000       00    00011 2222221 111222233334444443321  124588999999


Q ss_pred             hHHHHHHHHHHhcCCCCeEEEEecCCCCCcc--------ccccchh---H-----HhhcCccCcHHHHHHh---------
Q psy14801        290 TAMHVACQAAKSLRPDQRCVVILADGVRNYL--------TKFISDE---W-----MIEKGFLDEAEELEEM---------  344 (404)
Q Consensus       290 ~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~--------~~~~~~~---~-----~~~~~~~~~~~~~~~g---------  344 (404)
                      ++++|+.+.+|+..|+.+|++|++.+...+.        ...+...   +     ..|..+.++|+++...         
T Consensus       181 G~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~g  260 (308)
T 2egu_A          181 GTITGAGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGIGAGFVPDILDTSIYDGVITVTTEEAFAAARRAAREEG  260 (308)
T ss_dssp             HHHHHHHHHHHHHCTTCEEEEEEECC-----------------------CCCCCCSCSEEEEECHHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHhCCCCEEEEEEeCCCccccCCCCCCcccCccCCCCCCHhHHHHhcCeEEEECHHHHHHHHHHHHHHhC
Confidence            9999999999998899999999997652111        0111111   0     1223345677666553         


Q ss_pred             ----ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhccC
Q psy14801        345 ----IHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFI  383 (404)
Q Consensus       345 ----~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~~~  383 (404)
                          .|||++++++++++++..++++||+|+||+|.||+++++
T Consensus       261 i~~epssa~a~aa~~~~~~~~~~~~~vv~i~tg~g~ky~~~~~  303 (308)
T 2egu_A          261 ILGGISSGAAIHAALKVAKELGKGKKVLAIIPSNGERYLSTPL  303 (308)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHCTTCEEEEEECBBGGGGTTSST
T ss_pred             ceEcHHHHHHHHHHHHHHHhcCCCCeEEEEECCCCcccccchh
Confidence                389999999999987656789999999999999999943

>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*

Probab=99.71  E-value=2.7e-18  Score=162.16  Aligned_cols=223  Identities=17%  Similarity=0.232  Sum_probs=143.7

Q ss_pred             cEee-cCCCCCCChhhHHhhHHHHHHHHhC--CC--cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC
Q psy14801        152 AVVL-DQFRNPNNPLSHYETTAEEILRDTG--GK--VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ  226 (404)
Q Consensus       152 ~~~~-~e~~np~~si~g~~~~a~ei~~q~~--~~--~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~  226 (404)
                      .+|+ .|+.||++|.|  +|.+..++.++.  +.  ++  ||++++||  +|+++|+.++..|+++++|+|.+.+.....
T Consensus        32 ~v~~K~E~~~ptGSfK--~R~a~~~l~~a~~~g~~~~~--vv~aSsGN--~g~a~A~aa~~~G~~~~iv~p~~~~~~k~~  105 (303)
T 1o58_A           32 RIFLKLEKNNPGGSVK--DRPALFMILDAEKRGLLKNG--IVEPTSGN--MGIAIAMIGAKRGHRVILTMPETMSVERRK  105 (303)
T ss_dssp             TEEEEEGGGSTTSBTT--HHHHHHHHHHHHHTTCCTTC--EEEECSSH--HHHHHHHHHHHHTCCEEEEEETTSCHHHHH
T ss_pred             eEEEEecCCCCCCChH--HHHHHHHHHHHHHcCCCCCC--EEEECchH--HHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence            4666 89999999999  999999998874  22  33  77899999  999999999999999999999886432111


Q ss_pred             CCCCCCCCCCc--cc-cccC---CCCcccccccCccccCcEEecChHHH--HHHHHHHHHhc-----CcEeccchhhHHH
Q psy14801        227 SLNDVPENQIS--YN-EVEG---IGYSFAATTLDRNVIDQWGKCGDKDT--FLMARRLIKSE-----GLLVGGSSGTAMH  293 (404)
Q Consensus       227 ~~~~~~~~~~~--~~-~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~--~~~~~~l~~~~-----gi~~~~~tg~tla  293 (404)
                      .+.........  .. ....   ....+. ...+..+++++.+..+.+.  ...+.|++++.     .|++..|||++++
T Consensus       106 ~~~~~GA~V~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~  184 (303)
T 1o58_A          106 VLKMLGAELVLTPGELGMKGAVEKALEIS-RETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTIS  184 (303)
T ss_dssp             HHHHTTCEEEEECGGGHHHHHHHHHHHHH-HHHCCBCCCTTTCHHHHHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHH
T ss_pred             HHHHcCCEEEEECCCCCHHHHHHHHHHHH-HhcCeEeCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCEEEEeeCCcccHH
Confidence            11111111000  00 0000   000000 0001112222222222222  12356777664     3888899999999


Q ss_pred             HHHHHHHhcCCC-CeEEEEecCCCCCcc--------ccc---------cchhHHhhcCccCcHHHHHHh-----------
Q psy14801        294 VACQAAKSLRPD-QRCVVILADGVRNYL--------TKF---------ISDEWMIEKGFLDEAEELEEM-----------  344 (404)
Q Consensus       294 g~~~~lk~~~~~-~~vv~v~~~~~~~~~--------~~~---------~~~~~~~~~~~~~~~~~~~~g-----------  344 (404)
                      |+.+++|+..|+ .+|++|++.+...+.        ...         +... ..+..+.++|+++.+.           
T Consensus       185 Gi~~~~k~~~p~~~~vigve~~~~~~~~~g~~~~~~~~gi~~~~~~~~~~~~-~~d~~~~V~d~e~~~a~~~l~~~~gi~  263 (303)
T 1o58_A          185 GVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRS-VIDEVITVEDEEAYEMARYLAKKEGLL  263 (303)
T ss_dssp             HHHHHHHHHHGGGSEEEEEEETTSCTTTTCCCCCCCCTTSCCSSCCTTCCGG-GCCEEEEECHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHhCCCCCEEEEEecCCCccccCCCCCCeecCcCCCCCcCHHHHHH-hCCeEEEECHHHHHHHHHHHHHHcCce
Confidence            999999988788 899999997652211        111         1111 2234455777766553           


Q ss_pred             --ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhcc
Q psy14801        345 --IHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKF  382 (404)
Q Consensus       345 --~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~~  382 (404)
                        .|||++++++++++++++++++||+|+||+|.||++++
T Consensus       264 ~epssa~alaa~~~~~~~~~~~~~vv~i~tg~g~ky~~~~  303 (303)
T 1o58_A          264 VGISSGANVAAALKVAQKLGPDARVVTVAPDHAERYLSIL  303 (303)
T ss_dssp             BCHHHHHHHHHHHHHHHTSCTTCCEEEEECBBGGGCTTTC
T ss_pred             EcHHHHHHHHHHHHHHHHcCCCCEEEEEECCCCcccccCC
Confidence              38899999999998887788999999999999999974

>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1

Probab=99.68  E-value=1.2e-17  Score=162.18  Aligned_cols=233  Identities=15%  Similarity=0.102  Sum_probs=143.4

Q ss_pred             CcEee-cCCCCC-CChhhHHhhHHHHHHHHhCC--CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC
Q psy14801        151 NAVVL-DQFRNP-NNPLSHYETTAEEILRDTGG--KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ  226 (404)
Q Consensus       151 ~~~~~-~e~~np-~~si~g~~~~a~ei~~q~~~--~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~  226 (404)
                      ..+|+ .|..|| ++|.|  +|.+..++.++..  +++.+|+++++||  +|+++|+.++..|+++++++|...+.....
T Consensus       110 ~~IylK~E~lnp~tGS~K--~R~a~~~i~~l~~a~~~g~~Iv~assGN--hG~AlA~aaa~~Gl~~~ivmp~~~~~~k~~  185 (389)
T 1wkv_A          110 VRVWLKLEWYNPFSLSVK--DRPAVEIISRLSRRVEKGSLVADATSSN--FGVALSAVARLYGYRARVYLPGAAEEFGKL  185 (389)
T ss_dssp             EEEEEEEGGGSTTTSBTT--HHHHHHHHHHHTTTSCTTCEEEEECCHH--HHHHHHHHHHHTTCEEEEEEETTSCHHHHH
T ss_pred             CeEEEEEcCCCCCcCChH--HHHHHHHHHHHHHHHhcCCEEEEECCcH--HHHHHHHHHHHcCCeEEEEECCCCCHHHHH
Confidence            35676 899999 89988  9999999888331  3457889999999  999999999999999999999886421110


Q ss_pred             CCCCCCCCCC-c-c-ccccC-C--C-------Cccccccc-CccccCcEEecChHHHHHHHHHHH-HhcCcEeccchhhH
Q psy14801        227 SLNDVPENQI-S-Y-NEVEG-I--G-------YSFAATTL-DRNVIDQWGKCGDKDTFLMARRLI-KSEGLLVGGSSGTA  291 (404)
Q Consensus       227 ~~~~~~~~~~-~-~-~~~~~-i--~-------~~~~~~~~-~~~~~~~~~~v~d~e~~~~~~~l~-~~~gi~~~~~tg~t  291 (404)
                      .+....+... . . ....+ +  .       ..+.+.++ |..++..++.+...|+++++.+.. .-+.++++.|||++
T Consensus       186 ~~~~~GAeVv~~v~~~~~~da~~~a~~~~~~~g~~~~~p~~N~~~~~~~~~t~g~Ei~~Q~~~~g~~~D~vv~~vG~GG~  265 (389)
T 1wkv_A          186 LPRLLGAQVIVDPEAPSTVHLLPRVMKDSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGH  265 (389)
T ss_dssp             HHHHTTCEEEEETTCSSSGGGHHHHHHHHHHHCCEECCTTTCHHHHHHHHHTHHHHHHHHHHHTTCCEEEEEECCSSSHH
T ss_pred             HHHHcCCEEEEEcCCCCHHHHHHHHHHHHHccCcEecCcCCChHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHh
Confidence            0000111100 0 0 00000 0  0       00111111 011111112222333333332110 01348899999999


Q ss_pred             HHHHHHHHHhcCCCCeEEEEecCCCCCccccc--c--chhHHh----h-cCccCcHHHHHHh-------------ccchh
Q psy14801        292 MHVACQAAKSLRPDQRCVVILADGVRNYLTKF--I--SDEWMI----E-KGFLDEAEELEEM-------------IHSGT  349 (404)
Q Consensus       292 lag~~~~lk~~~~~~~vv~v~~~~~~~~~~~~--~--~~~~~~----~-~~~~~~~~~~~~g-------------~SsGa  349 (404)
                      ++|+...+++..|+.+++.|++.+.... ...  +  ...|+.    | ..+.++|+++..+             .|||+
T Consensus       266 ~~Gi~~~~k~~~p~vrvigVe~~~~~~l-~Gi~~i~~~~~~~~~~~~dg~~~~Vsd~ea~~a~~~l~~~eGi~~~pssa~  344 (389)
T 1wkv_A          266 MSAAAFYLQSVDPSIRAVLVQPAQGDSI-PGIRRVETGMLWINMLDISYTLAEVTLEEAMEAVVEVARSDGLVIGPSGGA  344 (389)
T ss_dssp             HHHHHHHHHHHCTTCEEEEEEECTTCCC-TTCCCGGGCCSHHHHSCCCCEEEEECHHHHHHHHHHHHHHHSCCBCHHHHH
T ss_pred             HHHHHHHHHHhCCCCeEEEEecCCCCcc-ccccccCCcchhhhhheeccEEEEECHHHHHHHHHHHHHHcCCeEChHHHH
Confidence            9999999999889999999999764221 000  0  112322    2 3345677766553             38999


Q ss_pred             HHHHHHHHHHh--cCCCCeEEEEEcCCCcchhhccCCHHHHHHc
Q psy14801        350 AMHVACQAAKS--LRPDQRCVVILADGVRNYLTKFISDEWMIEK  391 (404)
Q Consensus       350 ~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl~~~~~~~w~~~~  391 (404)
                      +++++++++++  +++ +.+|+++||+|+||+++++  +|+.+.
T Consensus       345 alaa~~~l~~~g~~~~-~~vVviltg~G~k~~~~~~--~~~~~~  385 (389)
T 1wkv_A          345 AVKALAKKAAEGDLEP-GDYVVVVPDTGFKYLSLVQ--NALEGA  385 (389)
T ss_dssp             HHHHHHHHHHTTCSCS-EEEEEEECBBGGGCHHHHH--HHHC--
T ss_pred             HHHHHHHHHHhcCCCC-CCEEEEEcCCCccCHHHHH--HHHHhc
Confidence            99999999987  544 4588899999999999975  566544

>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*

Probab=99.65  E-value=3.7e-17  Score=156.97  Aligned_cols=234  Identities=11%  Similarity=0.120  Sum_probs=144.1

Q ss_pred             CCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC----cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccc
Q psy14801        150 KNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK----VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQ  224 (404)
Q Consensus       150 ~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~----~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~  224 (404)
                      +..+|+ .|+.||.+|.|  +|.+..++.++...    ....||++|+||  +|+++|+.++..|+++++|+|++.+...
T Consensus        39 g~~i~~K~E~~~ptGSfK--~Rga~~~i~~a~~~g~~~~~~~vv~~SsGN--hg~a~A~aa~~~G~~~~iv~p~~~~~~k  114 (346)
T 3l6b_A           39 GRNLFFKCELFQKTGSFK--IRGALNAVRSLVPDALERKPKAVVTHSSGN--HGQALTYAAKLEGIPAYIVVPQTAPDCK  114 (346)
T ss_dssp             TSEEEEEEGGGSGGGBTH--HHHHHHHHHTTC-----CCCSCEEEECSSH--HHHHHHHHHHHTTCCEEEEEETTSCHHH
T ss_pred             CCeEEEEeCCCCCCCCcH--HHHHHHHHHHHHHhccccCCCEEEEeCCCH--HHHHHHHHHHHhCCCEEEEECCCCCHHH
Confidence            456777 89999999999  99999999988742    333488889999  9999999999999999999999875321


Q ss_pred             cCCCCCCCCCCCc-cccccC---CCCcccccccCccccCcEEecChHHHH----HHHHHHHHhc----CcEeccchhhHH
Q psy14801        225 PQSLNDVPENQIS-YNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF----LMARRLIKSE----GLLVGGSSGTAM  292 (404)
Q Consensus       225 ~~~~~~~~~~~~~-~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~----~~~~~l~~~~----gi~~~~~tg~tl  292 (404)
                      ...+......... ......   ....+ .......++.++   .|+..+    ..+.|++++.    .|++..|||+++
T Consensus       115 ~~~~~~~GA~V~~v~~~~~~~~~~a~~l-~~~~~~~~i~~~---~np~~~~g~~t~~~Ei~~q~~~~d~vvv~vG~GG~~  190 (346)
T 3l6b_A          115 KLAIQAYGASIVYCEPSDESRENVAKRV-TEETEGIMVHPN---QEPAVIAGQGTIALEVLNQVPLVDALVVPVGGGGML  190 (346)
T ss_dssp             HHHHHHTTCEEEEECSSHHHHHHHHHHH-HHHHTCEECCSS---SCHHHHHHHHHHHHHHHHHSTTCCEEEEECSSSHHH
T ss_pred             HHHHHHCCCEEEEECCCHHHHHHHHHHH-HHhcCCEEECCC---CChHHHHHHHHHHHHHHHhCCCCCEEEEecCccHHH
Confidence            1111111110000 000000   00000 000001111111   233332    2356777764    388999999999


Q ss_pred             HHHHHHHHhcCCCCeEEEEecCCCCC---------c-----ccc----c----cchh-H-----HhhcCccCcHHHHHHh
Q psy14801        293 HVACQAAKSLRPDQRCVVILADGVRN---------Y-----LTK----F----ISDE-W-----MIEKGFLDEAEELEEM  344 (404)
Q Consensus       293 ag~~~~lk~~~~~~~vv~v~~~~~~~---------~-----~~~----~----~~~~-~-----~~~~~~~~~~~~~~~g  344 (404)
                      +|+.+.+|+..|+.+|+.|+|.+...         .     ...    .    ++.. |     ..+..+.++|+++...
T Consensus       191 aGi~~~~k~~~p~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~~tia~gl~~~~g~~~~~~~~~~~d~~~~V~d~e~~~a  270 (346)
T 3l6b_A          191 AGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSSIGLNTWPIIRDLVDDIFTVTEDEIKCA  270 (346)
T ss_dssp             HHHHHHHHHHCTTSEEEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGGCSCCCTTHHHHHHHHCCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHhCCCCEEEEEecCCCHHHHHHHHcCCccccCCCCCchhhhccCCCcHHHHHHHHHcCCeEEEECHHHHHHH
Confidence            99999999999999999999865320         0     001    1    1111 1     1233455777766553


Q ss_pred             -------------ccchhHHHHHHHHH-Hh-cCCCCeEEEEEcCCCcchhhccCCHHHHHHcCCC
Q psy14801        345 -------------IHSGTAMHVACQAA-KS-LRPDQRCVVILADGVRNYLTKFISDEWMIEKGFL  394 (404)
Q Consensus       345 -------------~SsGa~~~~a~~~~-~~-~~~~~~iv~i~~D~g~rYl~~~~~~~w~~~~~~~  394 (404)
                                   .|||++++++++.+ +. .+++++||+|+| +|.+|++++|  .|+.+...+
T Consensus       271 ~~~l~~~~gi~~epssa~alaa~~~~~~~~~~~~~~~Vv~i~s-GG~~d~~~~~--~~~~~~~~~  332 (346)
T 3l6b_A          271 TQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVKNICIVLS-GGNVDLTSSI--TWVKQAERP  332 (346)
T ss_dssp             HHHHHHHHCCCCCHHHHHHHHHHHSGGGGGSCTTCCEEEEEEC-BCCCCTTGGG--TTCCCC---
T ss_pred             HHHHHHHCCcEEcHHHHHHHHHHHHhhhhhccCCCCeEEEEcC-CCCCCHHHHH--HHHHhhcCc
Confidence                         38888998887654 33 346788888876 6999999977  577655443

>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A

Probab=99.65  E-value=8e-17  Score=155.16  Aligned_cols=234  Identities=12%  Similarity=0.011  Sum_probs=145.6

Q ss_pred             HHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC-Ccc
Q psy14801        145 IASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG-SIL  222 (404)
Q Consensus       145 l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~-~~~  222 (404)
                      +.+..+..+|+ .|+.||.+|.|  +|.+..++.++.++-...||++++||  +|+++|+.++..|+++++++|.+ .+.
T Consensus        39 l~~~~g~~v~~K~E~~~ptgS~K--dR~a~~~l~~a~~~g~~~vv~~SsGN--~g~alA~~a~~~G~~~~iv~p~~~~~~  114 (351)
T 3aey_A           39 EARKKGIRLYAKYEGLNPTGSFK--DRGMTLAVSKAVEGGAQAVACASTGN--TAASAAAYAARAGILAIVVLPAGYVAL  114 (351)
T ss_dssp             HHHTTTCEEEEEEGGGSTTSBTT--HHHHHHHHHHHHHTTCSEEEESCSSH--HHHHHHHHHHHHTSEEEEEEETTCSCH
T ss_pred             hHHHhCCeEEEEecCCCCcccHH--HHHHHHHHHHHHhcCCCEEEEeCCCH--HHHHHHHHHHHcCCCEEEEECCCCCCH
Confidence            34444455777 89999999999  99999999887633234677789999  99999999999999999999987 532


Q ss_pred             cccCCCCCCCCCCCc-cccccCCCCcccccccCccccCcEEecChHHHH----HHHHHHHHhc-----CcEeccchhhHH
Q psy14801        223 AQPQSLNDVPENQIS-YNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTF----LMARRLIKSE-----GLLVGGSSGTAM  292 (404)
Q Consensus       223 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~----~~~~~l~~~~-----gi~~~~~tg~tl  292 (404)
                      .....+......... ....... ... ...+.......+.+..|+..+    ..+.|++++.     .|++..|||+++
T Consensus       115 ~k~~~~~~~GA~V~~v~~~~~~~-~~~-a~~l~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~  192 (351)
T 3aey_A          115 GKVAQSLVHGARIVQVEGNFDDA-LRL-TQKLTEAFPVALVNSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGNAGNI  192 (351)
T ss_dssp             HHHHHHHHTTCEEEEEESCHHHH-HHH-HHHHHHHSSEEECSTTCHHHHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHH
T ss_pred             HHHHHHHHcCCEEEEECCCHHHH-HHH-HHHHHHhcCcEecCCCCccceeeeeeHHHHHHHHcCCCCCEEEEecCchHHH
Confidence            111111111100000 0000000 000 000000000001112334332    2345777664     388889999999


Q ss_pred             HHHHHHHHhcC------CCCeEEEEecCCCCC-----------ccccccc----hhH------Hh---hcCccCcHHHHH
Q psy14801        293 HVACQAAKSLR------PDQRCVVILADGVRN-----------YLTKFIS----DEW------MI---EKGFLDEAEELE  342 (404)
Q Consensus       293 ag~~~~lk~~~------~~~~vv~v~~~~~~~-----------~~~~~~~----~~~------~~---~~~~~~~~~~~~  342 (404)
                      +|+.+.+++..      +..+|+.|++.+...           .+...++    ..|      +.   +..+.++|+++.
T Consensus       193 ~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~~~~~g~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~  272 (351)
T 3aey_A          193 TAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVERPETLATAIRIGNPASWQGAVRAKEESGGVIEAVTDEEIL  272 (351)
T ss_dssp             HHHHHHHHHHHHHTSCSSCCEEEEEEEGGGCHHHHTSCCSSCCCSCGGGCCSSCTTHHHHHHHHHHHTCEEEEECHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCCeEEEEecCCCChhhcCcccCCccchhHhhcCCCCCCHHHHHHHHHHhCCeEEEECHHHHH
Confidence            99999998764      367999999865311           1111111    011      11   233567777765


Q ss_pred             Hh-------------ccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchhhccCC
Q psy14801        343 EM-------------IHSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLTKFIS  384 (404)
Q Consensus       343 ~g-------------~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl~~~~~  384 (404)
                      ++             .|||++++++++++++  ++++++||+|+||+|.||++++++
T Consensus       273 ~a~~~l~~~~gi~~epssa~alaa~~~~~~~~~~~~~~~vv~i~tg~~~k~~~~~~~  329 (351)
T 3aey_A          273 FAYRYLAREEGIFCEPASAAAMAGVFKLLREGRLEPESTVVLTLTGHGLKDPATAER  329 (351)
T ss_dssp             HHHHHHHHHTCCCBCHHHHHHHHHHHHHHHTTCSCTTCEEEEEECBBGGGCHHHHCS
T ss_pred             HHHHHHHHhCCEEECchHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCCHHHHHH
Confidence            53             3899999999999874  567899999999999999999875

>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*

Probab=99.64  E-value=1.2e-16  Score=154.87  Aligned_cols=250  Identities=11%  Similarity=0.059  Sum_probs=147.9

Q ss_pred             HHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccc
Q psy14801        145 IASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILA  223 (404)
Q Consensus       145 l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~  223 (404)
                      +.+..+..+|+ .|+.||.+|.|  +|.+..++.++.++....||++||||  +|+++|+.++..|+++++|+|.+.+..
T Consensus        55 l~~~~g~~i~~K~E~~~ptGSfK--dRga~~~l~~a~~~g~~~vv~aSsGN--~g~alA~aa~~~G~~~~iv~p~~~~~~  130 (372)
T 1p5j_A           55 LSKMAGTSVYLKMDSAQPSGSFK--IRGIGHFCKRWAKQGCAHFVCSSAGN--AGMAAAYAARQLGVPATIVVPGTTPAL  130 (372)
T ss_dssp             HHHHHTSCEEEECGGGSGGGBTT--HHHHHHHHHHHHHTTCCEEEECCSSH--HHHHHHHHHHHHTCCEEEEECTTCCHH
T ss_pred             hHHHhCCEEEEEEcCCCCCCChH--HHHHHHHHHHHHHcCCCEEEEeCCCH--HHHHHHHHHHHcCCcEEEEECCCCCHH
Confidence            33333345777 89999999999  99999999887544355788889999  999999999999999999999987432


Q ss_pred             ccCCCCCCCCCCCc-cccccC---CCCcccccccCccccCcEEecChHHHH-HHHHHHHHhcC-----cEeccchhhHHH
Q psy14801        224 QPQSLNDVPENQIS-YNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSEG-----LLVGGSSGTAMH  293 (404)
Q Consensus       224 ~~~~~~~~~~~~~~-~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~g-----i~~~~~tg~tla  293 (404)
                      ....+......... ......   ....+........+++++.+....+.+ ..+.|++++.+     |++..|||++++
T Consensus       131 k~~~~~~~GA~V~~~~~~~~~a~~~a~~l~~~~~~~~~v~~~~n~~~~~G~~t~~~Ei~~ql~~~~d~vvvpvG~GG~~~  210 (372)
T 1p5j_A          131 TIERLKNEGATCKVVGELLDEAFELAKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPGAIALSVGGGGLLC  210 (372)
T ss_dssp             HHHHHHHTTCEEEECCSCHHHHHHHHHHHHHHSTTEEECCSSCCHHHHHHHTHHHHHHHHHCSSCCSEEEEECSSSHHHH
T ss_pred             HHHHHHhcCCEEEEECCCHHHHHHHHHHHHHhcCCcEEeCCCCCHHHHhhHHHHHHHHHHHcCCCCCEEEEecCCchHHH
Confidence            11111111111000 000000   000000000011122333222222222 33477777653     888889999999


Q ss_pred             HHHHHHHhcC-CCCeEEEEecCCCCCc-----------cc------cccc------hhH--Hhh---cCccCcHHHHHHh
Q psy14801        294 VACQAAKSLR-PDQRCVVILADGVRNY-----------LT------KFIS------DEW--MIE---KGFLDEAEELEEM  344 (404)
Q Consensus       294 g~~~~lk~~~-~~~~vv~v~~~~~~~~-----------~~------~~~~------~~~--~~~---~~~~~~~~~~~~g  344 (404)
                      |+.+.+|+.. |+.+|++|++.+...+           +.      ..++      ..|  +.+   ..+.++|+++.++
T Consensus       211 Gi~~~~k~~~~p~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~~~~Vsd~e~~~a  290 (372)
T 1p5j_A          211 GVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGSQALKLFQEHPIFSEVISDQEAVAA  290 (372)
T ss_dssp             HHHHHHHHTTCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCCCCSCGGGCCSSCCHHHHHHHHHSCEEEEEECHHHHHHH
T ss_pred             HHHHHHHHhCCCCceEEEEecCCChHHHHHHHcCCceecCCCceeecccCCCCCCHHHHHHHhhcCCEEEEECHHHHHHH
Confidence            9999999875 8899999999764211           00      0111      111  111   1345777776653


Q ss_pred             -------------ccchhHHHHHHHH-----HHh---cCCCCeEEEEEcCCCcchhhccCCHHHHHHcCCCCchhhh
Q psy14801        345 -------------IHSGTAMHVACQA-----AKS---LRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLDEAEEL  400 (404)
Q Consensus       345 -------------~SsGa~~~~a~~~-----~~~---~~~~~~iv~i~~D~g~rYl~~~~~~~w~~~~~~~~~~~~~  400 (404)
                                   .|||++++++++.     .+.   ++++++||+|+||++  |++.-.-.+|+++.++-...+.+
T Consensus       291 ~~~l~~~eGi~~epssa~alaa~~~~~~~~l~~~g~~~~~~~~Vv~i~tgg~--~~~~~~~~~~~~~~~~~~~~~~~  365 (372)
T 1p5j_A          291 IEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGS--NISLAQLRALKEQLGMTNRLPKL  365 (372)
T ss_dssp             HHHHHHHTCCCCCHHHHHHHHHHHTTHHHHHHHTTSSCSSCSCEEEECCBCS--SCCHHHHHHHHHHHTC-------
T ss_pred             HHHHHHHcCCeechhHHHHHHHHHHhhHHHHhhccccCCCCCeEEEEECCCC--CCCHHHHHHHHHHhCCCCCCCcc
Confidence                         3889999988742     221   356899999999987  44432226899998875444433

>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}

Probab=99.64  E-value=1e-16  Score=154.83  Aligned_cols=235  Identities=10%  Similarity=0.040  Sum_probs=145.3

Q ss_pred             HHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC-Cc
Q psy14801        144 RIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG-SI  221 (404)
Q Consensus       144 ~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~-~~  221 (404)
                      ++.+..+..+|+ .|+.||.+|.|  +|.+..++.++.++-...||++++||  +|+++|+.++..|+++++++|.+ .+
T Consensus        46 ~l~~~~g~~i~~K~E~~~ptgSfK--dR~a~~~l~~a~~~g~~~vv~aSsGN--~g~alA~~a~~~G~~~~i~~p~~~~~  121 (360)
T 2d1f_A           46 NLSKQTGCTIHLKVEGLNPTGSFK--DRGMTMAVTDALAHGQRAVLCASTGN--TSASAAAYAARAGITCAVLIPQGKIA  121 (360)
T ss_dssp             HHHHHHSSEEEEEEGGGSTTSBTT--HHHHHHHHHHHHHTTCSEEEECCSSH--HHHHHHHHHHHHTCEEEEEECSSCCC
T ss_pred             hhHHHhCCeEEEEECCCCCCcCHH--HHHHHHHHHHHHHCCCCEEEEeCCcH--HHHHHHHHHHHcCCcEEEEEcCCCCC
Confidence            334333355777 89999999999  99999999887633234677789999  99999999999999999999987 53


Q ss_pred             ccccCCCCCCCCCCCc-cccccCCCCcccccccCccccC-cEEecChHHHH----HHHHHHHHhc-----CcEeccchhh
Q psy14801        222 LAQPQSLNDVPENQIS-YNEVEGIGYSFAATTLDRNVID-QWGKCGDKDTF----LMARRLIKSE-----GLLVGGSSGT  290 (404)
Q Consensus       222 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~-~~~~v~d~e~~----~~~~~l~~~~-----gi~~~~~tg~  290 (404)
                      ......+......... ....... ... ...+.....+ .+.+..|+..+    ..+.|++++.     .|++..|||+
T Consensus       122 ~~k~~~~~~~GA~v~~v~~~~~~~-~~~-a~~l~~~~~~~~~i~~~n~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG  199 (360)
T 2d1f_A          122 MGKLAQAVMHGAKIIQIDGNFDDC-LEL-ARKMAADFPTISLVNSVNPVRIEGQKTAAFEIVDVLGTAPDVHALPVGNAG  199 (360)
T ss_dssp             HHHHHHHHHTTCEEEEBSSCHHHH-HHH-HHHHHHHCTTEEECSTTCHHHHHHHTHHHHHHHHHHSSCCSEEEEECSSSH
T ss_pred             HHHHHHHHHcCCEEEEECCCHHHH-HHH-HHHHHHhcCCeEEcCCCChhhhhhHHHHHHHHHHHcCCCCCEEEEeCCchH
Confidence            2111111111100000 0000000 000 0000000000 01112334332    2345666654     3888889999


Q ss_pred             HHHHHHHHHHhcC------CCCeEEEEecCCCCC-----------ccccccc----hhH------Hh---hcCccCcHHH
Q psy14801        291 AMHVACQAAKSLR------PDQRCVVILADGVRN-----------YLTKFIS----DEW------MI---EKGFLDEAEE  340 (404)
Q Consensus       291 tlag~~~~lk~~~------~~~~vv~v~~~~~~~-----------~~~~~~~----~~~------~~---~~~~~~~~~~  340 (404)
                      +++|+.+.+++..      +..+|+.|++.+...           .+...++    ..|      ++   +..+.++|++
T Consensus       200 ~~~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~~~~~g~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e  279 (360)
T 2d1f_A          200 NITAYWKGYTEYHQLGLIDKLPRMLGTQAAGAAPLVLGEPVSHPETIATAIRIGSPASWTSAVEAQQQSKGRFLAASDEE  279 (360)
T ss_dssp             HHHHHHHHHHHHHHTTSCSSCCEEEEEEEGGGCHHHHSSCCSSCCCSCGGGCCSSCTTHHHHHHHHHHHTCEEEEECHHH
T ss_pred             HHHHHHHHHHHHHhccccccCceEEEEecCCCCHHhcCCccCCccchHHHhCCCCCCcHHHHHHHHHHhCCeEEEECHHH
Confidence            9999999998754      357999999865311           1111111    011      22   1345677777


Q ss_pred             HHHh-------------ccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchhhccCC
Q psy14801        341 LEEM-------------IHSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLTKFIS  384 (404)
Q Consensus       341 ~~~g-------------~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl~~~~~  384 (404)
                      +..+             .|||++++++++++++  ++++++||+|+||+|.||++++++
T Consensus       280 ~~~a~~~l~~~eGi~~epssa~alaa~~~~~~~~~~~~~~~vv~i~tg~~~k~~~~~~~  338 (360)
T 2d1f_A          280 ILAAYHLVARVEGVFVEPASAASIAGLLKAIDDGWVARGSTVVCTVTGNGLKDPDTALK  338 (360)
T ss_dssp             HHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHTSSCTTCEEEEEECBBGGGCHHHHHS
T ss_pred             HHHHHHHHHHhcCeeECchHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCCcCCHHHHHH
Confidence            6553             2899999999998874  567899999999999999999764

>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}

Probab=99.62  E-value=1.3e-16  Score=153.79  Aligned_cols=223  Identities=9%  Similarity=0.023  Sum_probs=141.0

Q ss_pred             Eee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC-CcccccCCCCC
Q psy14801        153 VVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG-SILAQPQSLND  230 (404)
Q Consensus       153 ~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~-~~~~~~~~~~~  230 (404)
                      +|+ .|+.||.+|.|  +|.+..++.++.++-...||+++|||  +|+++|+.++..|+++++|+|.+ .+......+..
T Consensus        49 i~~K~E~~~ptGS~K--dR~a~~~l~~a~~~g~~~vv~~SsGN--~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~  124 (352)
T 2zsj_A           49 IYLKYEGLNPTGSFK--DRGMTLAISKAVEAGKRAVICASTGN--TSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMI  124 (352)
T ss_dssp             EEEEEGGGSTTSBTT--HHHHHHHHHHHHHTTCCEEEECCSSH--HHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHHH
T ss_pred             EEEEECCCCCCccHH--HHHHHHHHHHHHhcCCCEEEEeCCch--HHHHHHHHHHhcCCcEEEEECCCCCCHHHHHHHHH
Confidence            777 89999999999  99999999887633234677789999  99999999999999999999987 53211111110


Q ss_pred             CCCCCCc-cccccC---CCCcccccccCccccCcEEecChHHHH----HHHHHHHHhc-----CcEeccchhhHHHHHHH
Q psy14801        231 VPENQIS-YNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF----LMARRLIKSE-----GLLVGGSSGTAMHVACQ  297 (404)
Q Consensus       231 ~~~~~~~-~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~----~~~~~l~~~~-----gi~~~~~tg~tlag~~~  297 (404)
                      ....... ......   ....+ .......+.+    ..|+...    ..+.|++++.     .|++..|||++++|+.+
T Consensus       125 ~GA~v~~v~~~~~~~~~~a~~l-~~~~~~~~~~----~~n~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~  199 (352)
T 2zsj_A          125 YGAKVLAIQGTFDDALNIVRKI-GENFPVEIVN----SVNPYRIEGQKTAAFEICDTLGEAPDYHFIPVGNAGNITAYWK  199 (352)
T ss_dssp             TTCEEEEESSCHHHHHHHHHHH-HHHSSEEECS----TTCTHHHHHHTHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHH
T ss_pred             cCCEEEEECCCHHHHHHHHHHH-HHHcCcEECC----CCCcchhhhHhHHHHHHHHHcCCCCCEEEEeCCCcHHHHHHHH
Confidence            1100000 000000   00000 0000001111    1233321    2345666654     38888899999999999


Q ss_pred             HHHhcC------CCCeEEEEecCCCCC-----------ccccccc----hhH------Hh---hcCccCcHHHHHHh---
Q psy14801        298 AAKSLR------PDQRCVVILADGVRN-----------YLTKFIS----DEW------MI---EKGFLDEAEELEEM---  344 (404)
Q Consensus       298 ~lk~~~------~~~~vv~v~~~~~~~-----------~~~~~~~----~~~------~~---~~~~~~~~~~~~~g---  344 (404)
                      .+++..      +..+|+.|++.+...           .+...++    ..|      ++   +..+.++|+++..+   
T Consensus       200 ~~k~~~~~G~~~~~~~vigve~~~~~~~~~g~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~  279 (352)
T 2zsj_A          200 GFKIYYEEGKITKLPRMMGWQAEGAAPIVKGYPIKNPQTIATAIKIGNPYSWKSALKAAQESGGKIDAVSDSEILYAYKL  279 (352)
T ss_dssp             HHHHHHHTTSCSSCCEEEEEEETTBCHHHHTSCCSSCCCSCGGGCCSSCTTHHHHHHHHHHHTCEEEEECHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCCEEEEEecCCCcHHhcCCccCCCcchhHHhcCCCCCcHHHHHHHHHHhCCeEEEECHHHHHHHHHH
Confidence            998764      357999999866421           1111111    111      11   13356777776553   


Q ss_pred             ----------ccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchhhccCC
Q psy14801        345 ----------IHSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLTKFIS  384 (404)
Q Consensus       345 ----------~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl~~~~~  384 (404)
                                .|||++++++++++++  ++++++||+|+||+|.||++++++
T Consensus       280 l~~~~gi~~epssa~alaa~~~~~~~~~~~~~~~vv~i~tg~~~k~~~~~~~  331 (352)
T 2zsj_A          280 IASTEGVFCEPASAASVAGLIKLVREGFFKGGEVVTCTLTGNGLKDPDTAIK  331 (352)
T ss_dssp             HHHHHCCCBCHHHHHHHHHHHHHHHTTCCCSCCEEEEEECBBGGGCHHHHHH
T ss_pred             HHHhCCeeECchHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCCccChHHHHH
Confidence                      3899999999999874  567899999999999999998763

>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1

Probab=99.62  E-value=5.4e-16  Score=146.98  Aligned_cols=222  Identities=10%  Similarity=0.080  Sum_probs=136.8

Q ss_pred             HHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccc
Q psy14801        145 IASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILA  223 (404)
Q Consensus       145 l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~  223 (404)
                      +.+..+..+|+ .|+.||++|.|  +|.+..++.+++  +...||++|+||  +|+++|+.++..|+++++|+|.+.+..
T Consensus        29 l~~~~g~~i~~K~E~~~ptgSfK--dR~a~~~i~~l~--~~~~vv~~ssGN--~g~alA~~a~~~G~~~~iv~p~~~~~~  102 (311)
T 1ve5_A           29 LDGLLGKRLLLKAEHLQKTGSFK--ARGALSKALALE--NPKGLLAVSSGN--HAQGVAYAAQVLGVKALVVMPEDASPY  102 (311)
T ss_dssp             HHHHTTSEEEEEEGGGSGGGBTH--HHHHHHHHHHSS--SCCCEEEECSSH--HHHHHHHHHHHHTCCEEEECCCC--CC
T ss_pred             hHHhhCCeEEEEecCCCCcCCcH--HHHHHHHHHHhc--CCCeEEEECCCc--HHHHHHHHHHHcCCCEEEEECCCCCHH
Confidence            34444456777 89999999999  999999999987  344678889999  999999999999999999999886432


Q ss_pred             ccCCCCCCCCCCCc-cccccC---CCCcccccccCccccCcEEecChHHHH-HHHHHHHHhc--------CcEeccchhh
Q psy14801        224 QPQSLNDVPENQIS-YNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSE--------GLLVGGSSGT  290 (404)
Q Consensus       224 ~~~~~~~~~~~~~~-~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~--------gi~~~~~tg~  290 (404)
                      ....+......... ......   ....+ .......+++++.+....+.+ ..+.|++++.        .+++..|||+
T Consensus       103 k~~~~~~~GA~V~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~q~~~~~~~~d~vvvpvG~Gg  181 (311)
T 1ve5_A          103 KKACARAYGAEVVDRGVTAKNREEVARAL-QEETGYALIHPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGGGG  181 (311)
T ss_dssp             HHHHHHHTTCEEECTTCCTTTHHHHHHHH-HHHHCCEECCSSSSHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECSSSH
T ss_pred             HHHHHHHcCCEEEEECCCHHHHHHHHHHH-HHhcCcEecCCCCCcchhhhccHHHHHHHHHHHhcCCCCCEEEEccCchH
Confidence            11111111100000 000000   00000 000011122222111111111 2234555443        3888999999


Q ss_pred             HHHHHHHHHHhcCCCCeEEEEecCCCCC---------cc-----ccccch----------hH-----HhhcCccCcHHHH
Q psy14801        291 AMHVACQAAKSLRPDQRCVVILADGVRN---------YL-----TKFISD----------EW-----MIEKGFLDEAEEL  341 (404)
Q Consensus       291 tlag~~~~lk~~~~~~~vv~v~~~~~~~---------~~-----~~~~~~----------~~-----~~~~~~~~~~~~~  341 (404)
                      +++|+.+.+|+..|+.+|++|++.+...         +.     ...+.+          .|     ..+..+.++|+++
T Consensus       182 ~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~v~d~e~  261 (311)
T 1ve5_A          182 LLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTLSLGERTFPILRERVDGILTVSEEAL  261 (311)
T ss_dssp             HHHHHHHHHHHHCTTSEEEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGGCCSSCCTTTHHHHHHHCCEEEEECHHHH
T ss_pred             HHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCccccCCCCCeeeCcCCCCCccHHHHHHHHhcCCEEEEECHHHH
Confidence            9999999999988999999999965321         00     011111          11     1233455777776


Q ss_pred             HHh-------------ccchhHHHHHHHHHHhcCCCCeEEEEEcCCC
Q psy14801        342 EEM-------------IHSGTAMHVACQAAKSLRPDQRCVVILADGV  375 (404)
Q Consensus       342 ~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g  375 (404)
                      .++             .|||++++++++++++ . +++||+|+||++
T Consensus       262 ~~a~~~l~~~~gi~~epssa~alaa~~~~~~~-~-~~~vv~i~tgg~  306 (311)
T 1ve5_A          262 LEAERLLFTRTKQVVEPTGALPLAAVLEHGAR-L-PQTLALLLSGGN  306 (311)
T ss_dssp             HHHHHHHHHHTCBCCCGGGGHHHHHHHHHGGG-S-CSEEEEEECBCC
T ss_pred             HHHHHHHHHhcCceEchHHHHHHHHHHhhhhc-c-CCEEEEEECCCC
Confidence            553             3899999999999887 5 999999999986

>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A*

Probab=99.60  E-value=3.2e-16  Score=149.26  Aligned_cols=217  Identities=12%  Similarity=0.094  Sum_probs=138.1

Q ss_pred             CCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCC
Q psy14801        150 KNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQS  227 (404)
Q Consensus       150 ~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~  227 (404)
                      +..+|+ .|+.||.+|.|  +|.+..++.++.+ .....||+.++||  +|+++|+.++..|+++++|+|.+.+......
T Consensus        40 g~~i~~K~E~~~ptGS~K--dRga~~~i~~~~~~~~~~~vv~~ssGN--~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~  115 (323)
T 1v71_A           40 VAEVFFKCENFQKMGAFK--FRGALNALSQLNEAQRKAGVLTFSSGN--HAQAIALSAKILGIPAKIIMPLDAPEAKVAA  115 (323)
T ss_dssp             TSEEEEEEGGGSGGGBTH--HHHHHHHHTTCCHHHHHHCEEECCSSH--HHHHHHHHHHHTTCCEEEEEETTCCHHHHHH
T ss_pred             CCeEEEEecCCCCcCCHH--HHHHHHHHHHHHHhcCCCeEEEeCCCc--HHHHHHHHHHHcCCCEEEECCCCCcHHHHHH
Confidence            345666 89999999999  9999999987652 2334678889999  9999999999999999999998874321110


Q ss_pred             CCCCCCCCCc-cccccC---CCCcccccccCccccCcEEecChHHHH----HHHHHHHHhc----CcEeccchhhHHHHH
Q psy14801        228 LNDVPENQIS-YNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF----LMARRLIKSE----GLLVGGSSGTAMHVA  295 (404)
Q Consensus       228 ~~~~~~~~~~-~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~----~~~~~l~~~~----gi~~~~~tg~tlag~  295 (404)
                      +......... ......   ....+ .......+++++   +|+..+    ..+.|++++.    .|++..|||++++|+
T Consensus       116 ~~~~GA~V~~~~~~~~~~~~~a~~l-~~~~~~~~i~~~---~n~~~~~g~~t~~~Ei~~q~~~~d~vv~~vG~GGt~~Gi  191 (323)
T 1v71_A          116 TKGYGGQVIMYDRYKDDREKMAKEI-SEREGLTIIPPY---DHPHVLAGQGTAAKELFEEVGPLDALFVCLGGGGLLSGS  191 (323)
T ss_dssp             HHHTTCEEEEECTTTTCHHHHHHHH-HHHHTCBCCCSS---SSHHHHHHHTHHHHHHHHHHCCCSEEEEECSSSHHHHHH
T ss_pred             HHHcCCEEEEECCCHHHHHHHHHHH-HHhcCCEecCCC---CCcchhhhHhHHHHHHHHhcCCCCEEEEecCCcHHHHHH
Confidence            1101100000 000000   00000 000011122332   223332    3356777664    388999999999999


Q ss_pred             HHHHHhcCCCCeEEEEecCCCCC-----------------ccccccch------h--HH---hhcCccCcHHHHHHh---
Q psy14801        296 CQAAKSLRPDQRCVVILADGVRN-----------------YLTKFISD------E--WM---IEKGFLDEAEELEEM---  344 (404)
Q Consensus       296 ~~~lk~~~~~~~vv~v~~~~~~~-----------------~~~~~~~~------~--~~---~~~~~~~~~~~~~~g---  344 (404)
                      .+++|+..|+.+|++|++.+...                 .+...+..      .  ++   .+..+.++|+++..+   
T Consensus       192 ~~~~k~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~  271 (323)
T 1v71_A          192 ALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLGNYTFSIIKEKVDDILTVSDEELIDCLKF  271 (323)
T ss_dssp             HHHHHHHCTTCEEEEEEEGGGCHHHHHHHHTSCCCCCCCCCSCTTSCCSSCCHHHHHHHHHHCCEEEEECHHHHHHHHHH
T ss_pred             HHHHHHcCCCCEEEEEEeCCCchHHHHHHcCCceecCCCCcccccccCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHH
Confidence            99999988999999999965321                 11111110      1  11   233455777776553   


Q ss_pred             ----------ccchhHHHHHHHHHHhcCCCCeEEEEEcCCC
Q psy14801        345 ----------IHSGTAMHVACQAAKSLRPDQRCVVILADGV  375 (404)
Q Consensus       345 ----------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g  375 (404)
                                .|+|+++++++++++++ ++++||+|+||++
T Consensus       272 l~~~~gi~~eps~a~alaa~~~~~~~~-~~~~vv~i~tGg~  311 (323)
T 1v71_A          272 YAARMKIVVEPTGCLSFAAARAMKEKL-KNKRIGIIISGGN  311 (323)
T ss_dssp             HHHHTCCCCCGGGGHHHHHHHHTGGGG-TTCEEEEEECBCC
T ss_pred             HHHhcCeEEcHHHHHHHHHHHHhHHhc-CCCeEEEEeCCCC
Confidence                      38899999999988877 8899999999975

>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}

Probab=99.59  E-value=1.6e-15  Score=144.13  Aligned_cols=227  Identities=11%  Similarity=0.038  Sum_probs=139.9

Q ss_pred             CcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCC
Q psy14801        151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLN  229 (404)
Q Consensus       151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~  229 (404)
                      ..+|+ .|+.||.+|.|  +|.+..++.++.++....||++||||  +|+++|+.++..|+++++|+|.+.+......+.
T Consensus        22 ~~v~~K~E~~~ptgS~K--~R~a~~~l~~a~~~g~~~vv~~ssGN--~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~   97 (318)
T 2rkb_A           22 MPVFLKCENVQPSGSFK--IRGIGHFCQEMAKKGCRHLVCSSGGN--AGIAAAYAARKLGIPATIVLPESTSLQVVQRLQ   97 (318)
T ss_dssp             SCEEEEEGGGSTTSBTT--HHHHHHHHHHHHHTTCCEEEECCCSH--HHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHH
T ss_pred             CeEEEEecCCCCCCCHH--HHHHHHHHHHHHHcCCCEEEEECCch--HHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHH
Confidence            45776 89999999999  99999999887544455788889999  999999999999999999999886432111111


Q ss_pred             CCCCCCCc-cccccC---CCCcccccccCccccCcEEecChHHHH-HHHHHHHHhcC-----cEeccchhhHHHHHHHHH
Q psy14801        230 DVPENQIS-YNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSEG-----LLVGGSSGTAMHVACQAA  299 (404)
Q Consensus       230 ~~~~~~~~-~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~g-----i~~~~~tg~tlag~~~~l  299 (404)
                      ........ ......   ....+ .......+++++.+....+.+ ..+.|++++.+     |++..|||++++|+.+.+
T Consensus        98 ~~Ga~V~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~  176 (318)
T 2rkb_A           98 GEGAEVQLTGKVWDEANLRAQEL-AKRDGWENVPPFDHPLIWKGHASLVQELKAVLRTPPGALVLAVGGGGLLAGVVAGL  176 (318)
T ss_dssp             HTTCEEEECCSSHHHHHHHHHHH-HHSTTEEECCSSCSHHHHHHHHHHHHHHHHHSSSCCSEEEEECSSSHHHHHHHHHH
T ss_pred             hcCCEEEEECCCHHHHHHHHHHH-HHhcCCEEeCCCCChhhccchhHHHHHHHHhcCCCCCEEEEeeCCCcHHHHHHHHH
Confidence            11111000 000000   00000 000011223333222222222 33477777654     888889999999999999


Q ss_pred             HhcC-CCCeEEEEecCCCCCc---------c--c------ccc-----c-hhH--Hhh---cCccCcHHHHHHh------
Q psy14801        300 KSLR-PDQRCVVILADGVRNY---------L--T------KFI-----S-DEW--MIE---KGFLDEAEELEEM------  344 (404)
Q Consensus       300 k~~~-~~~~vv~v~~~~~~~~---------~--~------~~~-----~-~~~--~~~---~~~~~~~~~~~~g------  344 (404)
                      ++.. |..+|++|++.+...+         .  +      ..+     . ..|  +.+   ..+.++|+++..+      
T Consensus       177 k~~~~~~~~vi~ve~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~  256 (318)
T 2rkb_A          177 LEVGWQHVPIIAMETHGAHCFNAAITAGKLVTLPDITSVAKSLGAKTVAARALECMQVCKIHSEVVEDTEAVSAVQQLLD  256 (318)
T ss_dssp             HHHTCTTSCEEEEEETTBCHHHHHHHHTSCCBCSCCCSSCGGGCCSBCCHHHHHHHHHSCEEEEEECHHHHHHHHHHHHH
T ss_pred             HHhCCCCCEEEEEecCCChHHHHHHHcCCcccCCCCCceecccCCCCCCHHHHHHHHHcCCEEEEECHHHHHHHHHHHHH
Confidence            9875 7889999999764211         0  0      001     1 111  111   2255777776553      


Q ss_pred             -------ccchhHHHHHHH-----HHHh---cCCCCeEEEEEcCCCcchhhcc
Q psy14801        345 -------IHSGTAMHVACQ-----AAKS---LRPDQRCVVILADGVRNYLTKF  382 (404)
Q Consensus       345 -------~SsGa~~~~a~~-----~~~~---~~~~~~iv~i~~D~g~rYl~~~  382 (404)
                             .|||++++++++     +.++   ++++++||+|+||++..+++.+
T Consensus       257 ~~gi~~eps~a~a~aa~~~~~~~~~~~~g~~~~~~~~vv~i~tgg~~~~~~~l  309 (318)
T 2rkb_A          257 DERMLVEPACGAALAAIYSGLLRRLQAEGCLPPSLTSVVVIVCGGNNINSREL  309 (318)
T ss_dssp             HHCBCCCHHHHHHHHHHHTSHHHHHHHTTSSCSSCSCEEEEECBCSSCCHHHH
T ss_pred             hcCcEEchhHHHHHHHHHHhhHHHHhhccccCCCCCeEEEEECCCCCCCHHHH
Confidence                   388999988774     2111   3578999999999987777654

>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*

Probab=99.57  E-value=9.5e-15  Score=139.19  Aligned_cols=218  Identities=12%  Similarity=0.023  Sum_probs=136.9

Q ss_pred             CCcEee-cCCCCC--CChhhHHhhHHHHHHHHhCCC-cCEEEEcc--CCChhHHHHHHHHHHhCCCcEEEEEcCCCC-cc
Q psy14801        150 KNAVVL-DQFRNP--NNPLSHYETTAEEILRDTGGK-VDMIVLGC--GTGGTASGIGRKIKEKCPSCKLVGADPFGS-IL  222 (404)
Q Consensus       150 ~~~~~~-~e~~np--~~si~g~~~~a~ei~~q~~~~-~~~vvv~~--gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~-~~  222 (404)
                      +..+|+ .|+.||  .++.|  +|.+..|++++.++ .+ .||++  ++||  +|+++|+.++..|+++++|+|... +.
T Consensus        35 g~~i~~K~E~~~p~~~gs~K--~R~~~~~i~~a~~~G~~-~vv~~G~ssGN--~g~alA~~a~~~G~~~~iv~p~~~~~~  109 (325)
T 1j0a_A           35 GADVYIKRDDLTGLGIGGNK--IRKLEYLLGDALSKGAD-VVITVGAVHSN--HAFVTGLAAKKLGLDAILVLRGKEELK  109 (325)
T ss_dssp             TSEEEEEEGGGSCSTTCSTH--HHHHHHHHHHHHHTTCS-EEEEECCTTCH--HHHHHHHHHHHTTCEEEEEEESCCCSC
T ss_pred             CCEEEEEecccCCCCCCchH--HHHHHHHHHHHHHcCCC-EEEEcCCcchH--HHHHHHHHHHHhCCcEEEEECCCCCCC
Confidence            345776 888899  77888  99999998887532 45 44554  8999  999999999999999999999877 42


Q ss_pred             cccCCCCCCCCCCC---cccc------ccCCCCcccccccCc--cccCcEEecChHHHH-HHHHHHHHhcC-----cEec
Q psy14801        223 AQPQSLNDVPENQI---SYNE------VEGIGYSFAATTLDR--NVIDQWGKCGDKDTF-LMARRLIKSEG-----LLVG  285 (404)
Q Consensus       223 ~~~~~~~~~~~~~~---~~~~------~~~i~~~~~~~~~~~--~~~~~~~~v~d~e~~-~~~~~l~~~~g-----i~~~  285 (404)
                      .....+........   ....      .......+ ......  .+.+++.++.+.+.+ ..+.||+++.+     |++.
T Consensus       110 ~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l-~~~~~~~~~~p~~~~n~~~~~g~~t~~~Ei~~q~~~~~d~vv~~  188 (325)
T 1j0a_A          110 GNYLLDKIMGIETRVYDAKDSFELMKYAEEIAEEL-KREGRKPYVIPPGGASPIGTLGYVRAVGEIATQSEVKFDSIVVA  188 (325)
T ss_dssp             HHHHHHHHTTCEEEEESCCSTTTHHHHHHHHHHHH-TTSSCCEEEECGGGCSHHHHTHHHHHHHHHHHHCCCCCSEEEEE
T ss_pred             chHHHHHHCCCEEEEeCcchhhhhhHHHHHHHHHH-HHcCCceEEEcCCCCCHHHHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence            21111110111000   0000      00000000 000000  011222222222222 45678887753     8889


Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcccc---------------------ccchhHHhhcCccCcHHHHHHh
Q psy14801        286 GSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK---------------------FISDEWMIEKGFLDEAEELEEM  344 (404)
Q Consensus       286 ~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~g  344 (404)
                      .|||++++|+.+.+|+.+++.+|+.|++.+...+...                     .+..+ ..+. +.++|+++.++
T Consensus       189 vGtGGt~~Gi~~~lk~~~~~~~vigVe~~~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~-~~~~-~~v~d~e~~~a  266 (325)
T 1j0a_A          189 AGSGGTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTSKLDNLIKEAAELLGVKVEVRPELYDY-SFGE-YGKITGEVAQI  266 (325)
T ss_dssp             ESSSHHHHHHHHHHHHTTCCCEEEEEECSSCSSSHHHHHHHHHHHHHHHTTCCCCSCCEEEEC-STTS-TTCCCHHHHHH
T ss_pred             CCchHhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHHHHHHhcCCCCCCCcEEecC-cccC-CCCCCHHHHHH
Confidence            9999999999999999999999999999876433211                     11111 2344 66777666552


Q ss_pred             -------------c-cchhHHHHHHHHHHhcCCCCeEEEEEcCCC
Q psy14801        345 -------------I-HSGTAMHVACQAAKSLRPDQRCVVILADGV  375 (404)
Q Consensus       345 -------------~-SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g  375 (404)
                                   . |||++++++++++++...+++||+|+|.+.
T Consensus       267 ~~~l~~~~gi~~ep~ssa~a~aa~~~~~~~~~~~~~Vv~i~tGG~  311 (325)
T 1j0a_A          267 IRKVGTREGIILDPVYTGKAFYGLVDLARKGELGEKILFIHTGGI  311 (325)
T ss_dssp             HHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCSCSEEEEEECCCH
T ss_pred             HHHHHHhhCcccccchHHHHHHHHHHHHHcCCCCCcEEEEECCCc
Confidence                         2 589999999999887545899999988754

>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B*

Probab=99.55  E-value=2e-15  Score=147.40  Aligned_cols=228  Identities=14%  Similarity=0.023  Sum_probs=137.9

Q ss_pred             CcEee-cCCCCCCChhhHHhhHHHHHHHHhC-CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc---
Q psy14801        151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTG-GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP---  225 (404)
Q Consensus       151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~-~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~---  225 (404)
                      ..+|+ .|+.||++|.|  +|.+..++..++ ...+.+|+++||||  +|+++|+.++..|+++++|+|........   
T Consensus        66 ~~i~~K~E~~~ptGSfK--~R~a~~~i~~a~~~g~~~vv~~~ssGN--~g~a~A~aa~~~G~~~~iv~p~~~~~~~~~~~  141 (388)
T 1v8z_A           66 AKIYLKREDLVHGGAHK--TNNAIGQALLAKFMGKTRLIAETGAGQ--HGVATAMAGALLGMKVDIYMGAEDVERQKMNV  141 (388)
T ss_dssp             SEEEEEEGGGSTTSBTH--HHHHHHHHHHHHHTTCCEEEEEESSSH--HHHHHHHHHHHTTCEEEEEEEHHHHTTCHHHH
T ss_pred             ceEEEEeccCCCCCCHH--HHHHHHHHHHHHHcCCCEEEEecCchH--HHHHHHHHHHHcCCcEEEEEcCCchhhhhhHH
Confidence            46777 89999999988  999988877654 23677888899999  99999999999999999999975211000   


Q ss_pred             CCCCCCCCCCCccc----cccC-CCC--ccccccc-Cccc-cCcEEecCh-HHH----H-HHHHHHHHh---------cC
Q psy14801        226 QSLNDVPENQISYN----EVEG-IGY--SFAATTL-DRNV-IDQWGKCGD-KDT----F-LMARRLIKS---------EG  281 (404)
Q Consensus       226 ~~~~~~~~~~~~~~----~~~~-i~~--~~~~~~~-~~~~-~~~~~~v~d-~e~----~-~~~~~l~~~---------~g  281 (404)
                      ..+...........    .... ...  ..+..+. +..+ .+++.+... +.+    . ..+.|+++|         +.
T Consensus       142 ~~~~~~GA~V~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~n~~p~~~~~~~~~~t~~~Ei~~q~~~~~~~~~d~  221 (388)
T 1v8z_A          142 FRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDV  221 (388)
T ss_dssp             HHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHSSCCSE
T ss_pred             HHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCceEecCCccCCCCchhHHHHHhHHHHHHHHHHHHHhcCCCCCE
Confidence            00010111000000    0000 000  0000000 0001 111111111 111    1 112444433         34


Q ss_pred             cEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCc-------c-------------------------c--------
Q psy14801        282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNY-------L-------------------------T--------  321 (404)
Q Consensus       282 i~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~-------~-------------------------~--------  321 (404)
                      |++..|||++++|+...+++ .|..+|+.|++.+...+       +                         .        
T Consensus       222 vvvpvG~GG~~aGi~~~~~~-~~~~~vigve~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~tia~gl~  300 (388)
T 1v8z_A          222 IVACVGGGSNAMGIFYPFVN-DKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLD  300 (388)
T ss_dssp             EEEECSSSHHHHHHHGGGTT-CTTSEEEEEEEEETBGGGTBSCCHHHHCEEEEETTEEEEECBCTTSCBCCCCCSSTTSC
T ss_pred             EEEecCccHhHHHHHHHHhh-CCCceEEEEccCccccchhhhhHHHhcCCceeccccccccccccccccCCCceeeeccc
Confidence            88999999999999876664 78899999998653110       0                         0        


Q ss_pred             -cccchh-H-Hh----hcCccCcHHHHHHh-------------ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhc
Q psy14801        322 -KFISDE-W-MI----EKGFLDEAEELEEM-------------IHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK  381 (404)
Q Consensus       322 -~~~~~~-~-~~----~~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~  381 (404)
                       +..+.. + +.    +..+.++|+++..+             .|||++++++.+++++++++++||+|+||+|.||+++
T Consensus       301 ~~~~g~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~~~sa~a~a~a~~l~~~~~~~~~vv~i~tg~g~k~~~~  380 (388)
T 1v8z_A          301 YPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDI  380 (388)
T ss_dssp             CSBCCHHHHHHHHTTSEEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHTSCTTCEEEEEECBBSGGGHHH
T ss_pred             cCCCChhHHHHHhcCCcEEEEECHHHHHHHHHHHHHhcCCeecccHHHHHHHHHHHHHhcCCCCEEEEEECCCCccCHHH
Confidence             011111 1 11    23345777666552             3899999999999988778999999999999999998


Q ss_pred             cC
Q psy14801        382 FI  383 (404)
Q Consensus       382 ~~  383 (404)
                      ++
T Consensus       381 ~~  382 (388)
T 1v8z_A          381 VL  382 (388)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2

Probab=99.53  E-value=4.6e-15  Score=147.93  Aligned_cols=226  Identities=12%  Similarity=0.137  Sum_probs=142.0

Q ss_pred             HHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCc
Q psy14801        144 RIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI  221 (404)
Q Consensus       144 ~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~  221 (404)
                      ++++..+..+|+ .|..||.+|.|  +|.|+.++.++..+ ....||++|+||  +|.++|+.++..|+++++|+|.+.+
T Consensus        39 ~Ls~~~g~~V~lK~E~lqPtgSfK--dRgA~n~i~~l~~~~~~~gVV~aSsGN--hg~avA~aa~~lGi~~~IvmP~~~p  114 (514)
T 1tdj_A           39 KLSSRLDNVILVKREDRQPVHSFK--LRGAYAMMAGLTEEQKAHGVITASAGN--HAQGVAFSSARLGVKALIVMPTATA  114 (514)
T ss_dssp             HHHHHTTSEEEEECGGGSTTSSST--HHHHHHHHHTTTTSSCSSSCEEEECSS--SHHHHHHHHHHTTCCEEEECCSSCC
T ss_pred             hhHHhhCCeEEEEECCCCCcccHH--HHHHHHHHHHHHHhcCCCEEEEECCcH--HHHHHHHHHHHcCCcEEEEECCCCC
Confidence            455555567888 89999999999  99999999988632 234578889999  8888888888999999999999875


Q ss_pred             ccccCCCCCCCCCCCc-cccccC---CCCcccccccCccccCcEEecChHHHH----HHHHHHHHhcC----cEeccchh
Q psy14801        222 LAQPQSLNDVPENQIS-YNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF----LMARRLIKSEG----LLVGGSSG  289 (404)
Q Consensus       222 ~~~~~~~~~~~~~~~~-~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~----~~~~~l~~~~g----i~~~~~tg  289 (404)
                      ......+......... ......   ....+ .......++.++   +|+..+    ..+.|++++.+    +++..|||
T Consensus       115 ~~Kv~~~r~~GAeVvlv~~~~dda~~~a~el-a~e~g~~~v~pf---dnp~~iaGqgTig~EI~eQl~~~D~vvvpvGgG  190 (514)
T 1tdj_A          115 DIKVDAVRGFGGEVLLHGANFDEAKAKAIEL-SQQQGFTWVPPF---DHPMVIAGQGTLALELLQQDAHLDRVFVPVGGG  190 (514)
T ss_dssp             HHHHHHHHHHSCEEECCCSSHHHHHHHHHHH-HHHHCCEECCSS---CCHHHHHHHHHHHHHHHHHCTTCCEEEEECSSS
T ss_pred             HHHHHHHHHCCCEEEEECCCHHHHHHHHHHH-HHhcCCEeeCCC---CCHHHHHHHHHHHHHHHHHCCCCCEEEEccCcH
Confidence            3211111000000000 000000   00000 000001122222   233332    23567777653    88999999


Q ss_pred             hHHHHHHHHHHhcCCCCeEEEEecCCCCCc--------------cccc--------cch-hH-----HhhcCccCcHHHH
Q psy14801        290 TAMHVACQAAKSLRPDQRCVVILADGVRNY--------------LTKF--------ISD-EW-----MIEKGFLDEAEEL  341 (404)
Q Consensus       290 ~tlag~~~~lk~~~~~~~vv~v~~~~~~~~--------------~~~~--------~~~-~~-----~~~~~~~~~~~~~  341 (404)
                      |+++|+..++|+..|+.+|+.|++.+...+              ..+.        .++ .|     ..|..+.++++++
T Consensus       191 GliaGia~~lk~~~P~~kVIgVep~~a~~l~~sl~~G~~~~l~~v~tiadGiav~~~g~~~~~l~~~~vd~~v~Vsd~ei  270 (514)
T 1tdj_A          191 GLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAI  270 (514)
T ss_dssp             HHHHHHHHHHHHHCTTCEEEEEEETTTCHHHHHHHHTSCCCCSCCCSSSSTTCCSSCCCHHHHHHTTSCCEEEEECHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEeccCChhHHHHHhcCCeeecCCccccccchhcCCCChHHHHHHHHhCCeEEEECHHHH
Confidence            999999999999999999999999653211              0000        111 11     1123345677766


Q ss_pred             HHh-------------ccchhHHHHHHHHHHhcC-CCCeEEEEEcCCCcc
Q psy14801        342 EEM-------------IHSGTAMHVACQAAKSLR-PDQRCVVILADGVRN  377 (404)
Q Consensus       342 ~~g-------------~SsGa~~~~a~~~~~~~~-~~~~iv~i~~D~g~r  377 (404)
                      ...             .|+|++++|+++++++.+ ++++||+|+|+++.+
T Consensus       271 ~~ai~~L~~~~givvEPsgA~alAal~~~~~~~~~~g~~VV~I~tGgn~d  320 (514)
T 1tdj_A          271 CAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNIRGERLAHILSGANVN  320 (514)
T ss_dssp             HHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHTCCSCEEEEECCCCCCC
T ss_pred             HHHHHHHHHHcCeEEcHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCCCCC
Confidence            543             388889999988876533 689999999999854

>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*

Probab=99.50  E-value=1.6e-14  Score=138.45  Aligned_cols=226  Identities=10%  Similarity=-0.054  Sum_probs=137.0

Q ss_pred             HHHHhC-C-CcEee-cCCCC-C--CChhhHHhhHHHHHHHHhCCC-cCEEEEc--cCCChhHHHHHHHHHHhCCCcEEEE
Q psy14801        144 RIASQM-K-NAVVL-DQFRN-P--NNPLSHYETTAEEILRDTGGK-VDMIVLG--CGTGGTASGIGRKIKEKCPSCKLVG  214 (404)
Q Consensus       144 ~l~~~~-~-~~~~~-~e~~n-p--~~si~g~~~~a~ei~~q~~~~-~~~vvv~--~gsG~~~~Gi~la~~~~~~~~~vi~  214 (404)
                      ++.+.. + ..+|+ .|+.| |  .+|.|  +|.+..++.++..+ .+ .||+  +++||  +|+++|+.++..|+++++
T Consensus        23 ~l~~~~~g~~~i~~K~E~~n~p~~~Gs~K--~R~a~~~l~~a~~~g~~-~vv~~G~ssGN--~g~alA~~a~~~G~~~~i   97 (341)
T 1f2d_A           23 RLSQHLGSKVNVYAKREDCNSGLAFGGNK--LRKLEYIVPDIVEGDYT-HLVSIGGRQSN--QTRMVAALAAKLGKKCVL   97 (341)
T ss_dssp             HHHHHTTTCSEEEEEEGGGSCSSTTCCHH--HHHHTTTHHHHHHSCCS-EEEEEEETTCH--HHHHHHHHHHHHTCEEEE
T ss_pred             hHHHhhCCCceEEEEeCCCCCCCCCCchH--HHHHHHHHHHHHHcCCC-EEEEcCCcchH--HHHHHHHHHHHhCCceEE
Confidence            444443 3 45776 89999 9  89999  99999999887532 34 5667  89999  999999999999999999


Q ss_pred             EcCCCCc-----cc------c-------cCCCCCCCCCCCc------ccccc----CCC-Ccccccc-cCc-cccCcEEe
Q psy14801        215 ADPFGSI-----LA------Q-------PQSLNDVPENQIS------YNEVE----GIG-YSFAATT-LDR-NVIDQWGK  263 (404)
Q Consensus       215 V~p~~~~-----~~------~-------~~~~~~~~~~~~~------~~~~~----~i~-~~~~~~~-~~~-~~~~~~~~  263 (404)
                      |+|...+     ..      .       ..++...+.....      ...+.    ..+ ..+++.+ +++ .+... +.
T Consensus        98 v~p~~~~~~~~~~~~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~i~~~~~~np~~~~G-~~  176 (341)
T 1f2d_A           98 IQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYGGLG-FV  176 (341)
T ss_dssp             EEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECCCCCCSSCCHHHHHHHHHHHHTTCCEEEECGGGTTSTTTTTH-HH
T ss_pred             EeccCCCccccccccccccccHHHHHhCCCEEEEeCCccchhHHHHHHHHHHHHHhcCCcEEEeCCCcCCCCccHHH-HH
Confidence            9998775     11      0       0111101100000      00000    001 0112222 211 11111 22


Q ss_pred             cChHHHHHHHHHHH-HhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcccc-----------ccc-----h
Q psy14801        264 CGDKDTFLMARRLI-KSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK-----------FIS-----D  326 (404)
Q Consensus       264 v~d~e~~~~~~~l~-~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~-----------~~~-----~  326 (404)
                      ....|++++..+.+ .-+.||+..|||++++|+.+.+++.+++.+|+.|++.+...+...           .++     .
T Consensus       177 t~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~  256 (341)
T 1f2d_A          177 GFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQTLRIANNTAKLIGVEHEFK  256 (341)
T ss_dssp             HHHHHHHHHHHHHTCCCSEEEEEESSSHHHHHHHHHHGGGTCGGGEEEEECSSCHHHHHHHHHHHHHHHHHHHTCCCCCS
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEecCchHhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHHHHHHHcCCCCCcC
Confidence            22334433332111 123488999999999999999999889999999999775322100           010     1


Q ss_pred             hH-----HhhcCccCcHHHHHHh-------------c-cchhHHHHHHHHHHh--cCCCCeEEEEEcCCC
Q psy14801        327 EW-----MIEKGFLDEAEELEEM-------------I-HSGTAMHVACQAAKS--LRPDQRCVVILADGV  375 (404)
Q Consensus       327 ~~-----~~~~~~~~~~~~~~~g-------------~-SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g  375 (404)
                      .|     ..+..+.++|+++.++             . |||++++++++++++  ++++++||+|++-+.
T Consensus       257 ~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~egi~~ep~~sa~alaa~~~~~~~~~~~~~~~Vv~i~tGG~  326 (341)
T 1f2d_A          257 DFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLTDPVYEGKSMQGLIALIKEDYFKPGANVLYVHLGGA  326 (341)
T ss_dssp             CCCEECTTSTTBTTBCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCSCTTCEEEEEECCCG
T ss_pred             eEEEecCcccceEecCCHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHhCCCCCCCeEEEEECCch
Confidence            11     1223355666666542             2 599999999999887  557889998876654

>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*

Probab=99.50  E-value=1.9e-14  Score=137.87  Aligned_cols=231  Identities=12%  Similarity=-0.036  Sum_probs=137.9

Q ss_pred             HHHHhC-C-CcEee-cCCCC-C--CChhhHHhhHHHHHHHHhCC-CcCEEEEc--cCCChhHHHHHHHHHHhCCCcEEEE
Q psy14801        144 RIASQM-K-NAVVL-DQFRN-P--NNPLSHYETTAEEILRDTGG-KVDMIVLG--CGTGGTASGIGRKIKEKCPSCKLVG  214 (404)
Q Consensus       144 ~l~~~~-~-~~~~~-~e~~n-p--~~si~g~~~~a~ei~~q~~~-~~~~vvv~--~gsG~~~~Gi~la~~~~~~~~~vi~  214 (404)
                      ++.+.. + ..+|+ .|+.| |  .++.|  +|.+..++.++.. ..+ .||+  +++||  +|+++|+.++..|+++++
T Consensus        23 ~l~~~~~g~~~i~~K~E~~n~p~~~gs~K--~R~a~~~l~~a~~~g~~-~vv~~GassGN--~g~alA~~a~~~G~~~~i   97 (338)
T 1tzj_A           23 RLSKHLGGKVHLYAKREDCNSGLAFGGNK--TRKLEYLIPEALAQGCD-TLVSIGGIQSN--QTRQVAAVAAHLGMKCVL   97 (338)
T ss_dssp             HHHHHTTSSSEEEEEEGGGSCSSTTCCHH--HHHHHTTHHHHHHTTCC-EEEEEEETTCH--HHHHHHHHHHHHTCEEEE
T ss_pred             HHHHhhCCCceEEEEeCCCCCCCCCCchH--HHHHHHHHHHHHHcCCC-EEEEcCCchhH--HHHHHHHHHHHhCCceEE
Confidence            344443 3 45666 89998 8  88989  9999999888752 234 4555  79999  999999999999999999


Q ss_pred             EcCCCCccc--------cc-------CCCCCCCCCCCcc------ccc----cCCCC-cccccc-cC-ccccCcEEecCh
Q psy14801        215 ADPFGSILA--------QP-------QSLNDVPENQISY------NEV----EGIGY-SFAATT-LD-RNVIDQWGKCGD  266 (404)
Q Consensus       215 V~p~~~~~~--------~~-------~~~~~~~~~~~~~------~~~----~~i~~-~~~~~~-~~-~~~~~~~~~v~d  266 (404)
                      |+|.+.+..        ..       ..+...+......      ..+    ...+. .+++.+ .+ ...... +....
T Consensus        98 v~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~p~~~~~n~~~~~g-~~t~~  176 (338)
T 1tzj_A           98 VQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGLG-FVGFA  176 (338)
T ss_dssp             EEECCSSCCCTTTTTSHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHTTCCEEECCGGGTSSTTTTTH-HHHHH
T ss_pred             EecCCCCccccccccCccHHHHHhCCCEEEEeCCcchhhHHHHHHHHHHHHHhcCCceEEeCCCcCCCcccHHH-HHHHH
Confidence            999877432        10       0000000000000      000    00011 112222 21 111111 12223


Q ss_pred             HHHHHHHHHHH-HhcCcEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCCCCcccc-------------c----cc-h
Q psy14801        267 KDTFLMARRLI-KSEGLLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGVRNYLTK-------------F----IS-D  326 (404)
Q Consensus       267 ~e~~~~~~~l~-~~~gi~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~~~~~~~-------------~----~~-~  326 (404)
                      .|++++..+.. +-+.|++..|||++++|+.+.+++. .+. +|+.|++.+...+...             .    +. .
T Consensus       177 ~Ei~~q~~~~~~~~d~vv~~vG~GGt~~Gi~~~~k~~g~~~-~vigve~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  255 (338)
T 1tzj_A          177 EEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRAD-RVIGVDASAKPAQTREQITRIARQTAEKVGLERDIMRA  255 (338)
T ss_dssp             HHHHHHHHHHTSCCSEEEEEESSSHHHHHHHHHHHTTTCGG-GEEEEECSSCHHHHHHHHHHHHHHHHHHHTCSSCCCGG
T ss_pred             HHHHHHHHhcCCCCCEEEEecCCcHHHHHHHHHHHhhCCCC-eEEEEEccCchHHHHHHHHHHHHHHHHHcCCCCCCCcc
Confidence            44443332110 1244889999999999999999987 788 9999999775322100             0    10 1


Q ss_pred             hH-----HhhcCccCcHHHHHHh-------------c-cchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchhhcc
Q psy14801        327 EW-----MIEKGFLDEAEELEEM-------------I-HSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLTKF  382 (404)
Q Consensus       327 ~~-----~~~~~~~~~~~~~~~g-------------~-SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl~~~  382 (404)
                      .|     ..+..+.++|+++..+             . |||++++++++++++  ++++++||+|+ ++|.+|++.+
T Consensus       256 ~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~ep~ysa~alaa~~~~~~~~~~~~~~~Vv~i~-tGG~~~~~~~  331 (338)
T 1tzj_A          256 DVVLDERFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLYAH-LGGVPALNGY  331 (338)
T ss_dssp             GCEEECTTSCSBTTBCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCSCTTCEEEEEE-CCCGGGGGGG
T ss_pred             cEEEecCcccceeecCCHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCCCCCCeEEEEE-CCCcccccch
Confidence            11     1122355666666552             2 489999999999876  45788888876 5799999875

>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*

Probab=99.49  E-value=5.6e-14  Score=135.69  Aligned_cols=242  Identities=12%  Similarity=0.103  Sum_probs=144.4

Q ss_pred             HHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcc
Q psy14801        144 RIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSIL  222 (404)
Q Consensus       144 ~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~  222 (404)
                      ++.+..+..+|+ .|+.||.+|.|  +|.+..++.++.+.-...||++||||  +|+++|+.++..|+++++|+|.+.+.
T Consensus        54 ~l~~~~g~~v~~K~E~~~ptGSfK--~Rga~~~i~~a~~~g~~~vv~aSsGN--~g~alA~aa~~~G~~~~iv~p~~~~~  129 (364)
T 4h27_A           54 ALSKMAGTSVYLKMDSAQPSGSFK--IRGIGHFCKRWAKQGCAHFVCSSSGN--AGMAAAYAARQLGVPATIVVPGTTPA  129 (364)
T ss_dssp             HHHHHHTSEEEEEEGGGSTTSBTH--HHHHHHHHHHHHHTTCCEEEECCSSH--HHHHHHHHHHHHTCCEEEEEETTSCH
T ss_pred             hhHHHhCCEEEEEeCCCCCCCCHH--HHHHHHHHHHHHhcCCCEEEEeCCCh--HHHHHHHHHHHhCCceEEEECCCCCH
Confidence            344433445776 89999999999  99888888877533234788889999  99999999999999999999998653


Q ss_pred             cccCCCCCCCCCCCc-cccccC---CCCccccccc-CccccCcEEecChHHHH----HHHHHHHHhcC-----cEeccch
Q psy14801        223 AQPQSLNDVPENQIS-YNEVEG---IGYSFAATTL-DRNVIDQWGKCGDKDTF----LMARRLIKSEG-----LLVGGSS  288 (404)
Q Consensus       223 ~~~~~~~~~~~~~~~-~~~~~~---i~~~~~~~~~-~~~~~~~~~~v~d~e~~----~~~~~l~~~~g-----i~~~~~t  288 (404)
                      .....+......... ......   ....+ .... ...+++++   +|+..+    ..+.|++++.+     |++..||
T Consensus       130 ~k~~~~~~~GA~Vv~v~~~~~~a~~~a~~l-~~~~~~~~~~~~~---~np~~~~G~~t~~~Ei~~q~~~~~D~vvvpvG~  205 (364)
T 4h27_A          130 LTIERLKNEGATVKVVGELLDEAFELAKAL-AKNNPGWVYIPPF---DDPLIWEGHASIVKELKETLWEKPGAIALSVGG  205 (364)
T ss_dssp             HHHHHHHTTTCEEEEECSSTTHHHHHHHHH-HHHSTTEEEECSS---CSHHHHHHHTHHHHHHHHHCSSCCSEEEEECSS
T ss_pred             HHHHHHHHcCCEEEEECCCHHHHHHHHHHH-HHhCCCeEEeCCC---CCHHHHHHHHHHHHHHHHHhCCCCCEEEEcCCc
Confidence            211111111111000 000000   00000 0000 11222332   344442    33567777653     8888899


Q ss_pred             hhHHHHHHHHHHhcC-CCCeEEEEecCCCCCc-----------c---c---ccc-----ch-hH--Hhh---cCccCcHH
Q psy14801        289 GTAMHVACQAAKSLR-PDQRCVVILADGVRNY-----------L---T---KFI-----SD-EW--MIE---KGFLDEAE  339 (404)
Q Consensus       289 g~tlag~~~~lk~~~-~~~~vv~v~~~~~~~~-----------~---~---~~~-----~~-~~--~~~---~~~~~~~~  339 (404)
                      |++++|+.+.+|+.+ |+.+|+.|+|.+...+           +   .   ..+     .. .|  +.+   ....++|+
T Consensus       206 GG~~aGi~~~~k~~~~p~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~~~~V~d~  285 (364)
T 4h27_A          206 GGLLCGVVQGLQEVGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGAQALKLFQEHPIFSEVISDQ  285 (364)
T ss_dssp             SHHHHHHHHHHHHTTCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCCCCSCGGGCCSSCCHHHHHHHTTSCEEEEEECHH
T ss_pred             cHHHHHHHHHHHHhCCCCCeEEEEecCCChHHHHHHHCCCcccCCCCCcHHHHhCCCCCcHHHHHHHHhcCCEEEEECHH
Confidence            999999999999876 7899999998654211           0   0   011     11 12  111   12346777


Q ss_pred             HHHHh-------------ccchhHHHHHH-----HHHHh--cCC-CCeEEEEEcCCCcchhhccCCHHHHHHcCCCC
Q psy14801        340 ELEEM-------------IHSGTAMHVAC-----QAAKS--LRP-DQRCVVILADGVRNYLTKFISDEWMIEKGFLD  395 (404)
Q Consensus       340 ~~~~g-------------~SsGa~~~~a~-----~~~~~--~~~-~~~iv~i~~D~g~rYl~~~~~~~w~~~~~~~~  395 (404)
                      ++.+.             .|||++++|++     ++.++  +++ +++||+|+|-+..--++.+  ..|.++.++..
T Consensus       286 e~~~a~~~l~~~egi~~eps~aaalaa~~~~k~~~l~~~g~~~~~~~~Vv~v~tGG~~~d~~~l--~~~~~~~~~~~  360 (364)
T 4h27_A          286 EAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGSNISLAQL--RALKEQLGMTN  360 (364)
T ss_dssp             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHTTSSCSSCCEEEEEECBCSSCCHHHH--HHHHHHTTC--
T ss_pred             HHHHHHHHHHHHCCCeEcccHHHHHHHHHhhhhHHhhhccCcCCCCCeEEEEECCCCCCCHHHH--HHHHHHhcccc
Confidence            76553             38889998885     44433  332 5899999998764444443  46777766543

>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A*

Probab=99.48  E-value=1.5e-14  Score=138.72  Aligned_cols=226  Identities=10%  Similarity=-0.002  Sum_probs=135.5

Q ss_pred             HHHhCCCcEee-cCCCCC--CChhhHHhhHHHHHHHHhCCC-cCEEEEcc-CCChhHHHHHHHHHHhCCCcEEEEEcCCC
Q psy14801        145 IASQMKNAVVL-DQFRNP--NNPLSHYETTAEEILRDTGGK-VDMIVLGC-GTGGTASGIGRKIKEKCPSCKLVGADPFG  219 (404)
Q Consensus       145 l~~~~~~~~~~-~e~~np--~~si~g~~~~a~ei~~q~~~~-~~~vvv~~-gsG~~~~Gi~la~~~~~~~~~vi~V~p~~  219 (404)
                      +.+..+..+|+ .|+.||  .++.|  +|.+..++.++.++ .+.+|..+ ++||  +|+++|+.++..|+++++|+|..
T Consensus        41 l~~~~g~~v~~K~E~l~p~~~gs~K--~R~~~~~l~~a~~~G~~~vv~~s~tsGN--~g~alA~aa~~~G~~~~iv~p~~  116 (342)
T 4d9b_A           41 LSDYLGREIYIKRDDVTPIAMGGNK--LRKLEFLVADALREGADTLITAGAIQSN--HVRQTAAVAAKLGLHCVALLENP  116 (342)
T ss_dssp             HHHHHTSCEEEEEGGGCSSTTCCTH--HHHHHHHHHHHHHTTCCEEEEEEETTCH--HHHHHHHHHHHHTCEEEEEEECT
T ss_pred             hHHhhCCEEEEEeCCCCCCCCcchH--HHhHHHHHHHHHHcCCCEEEEcCCcccH--HHHHHHHHHHHhCCcEEEEEeCC
Confidence            33333345776 899999  89999  99999999887533 34444443 3899  99999999999999999999987


Q ss_pred             Cccc--------ccCCCCCCCCCCCccccccCCCCc--ccccccCccccCcEE---ecChHHH----HHHHHHHHHhc--
Q psy14801        220 SILA--------QPQSLNDVPENQISYNEVEGIGYS--FAATTLDRNVIDQWG---KCGDKDT----FLMARRLIKSE--  280 (404)
Q Consensus       220 ~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~---~v~d~e~----~~~~~~l~~~~--  280 (404)
                      .+..        ....+...................  .....+.......++   +-+++..    ..++.||+++.  
T Consensus       117 ~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~p~~~~n~~~~~G~~t~~~EI~~q~~~  196 (342)
T 4d9b_A          117 IGTTAENYLTNGNRLLLDLFNTQIEMCDALTDPDAQLQTLATRIEAQGFRPYVIPVGGSSALGAMGYVESALEIAQQCEE  196 (342)
T ss_dssp             TCCCCHHHHHSHHHHHHHHTTCEEEECSCCSSHHHHHHHHHHHHHHTTCCEEECCGGGCSHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCccccccccchHHHHHHCCCEEEEECchhhHHHHHHHHHHHHHhcCCceEEeCCCCCChHHHHHHHHHHHHHHHHHhc
Confidence            6531        000000011100000000000000  000000000000111   1122222    13456666653  


Q ss_pred             -----CcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcccc-----------ccc----hhH-----HhhcCcc
Q psy14801        281 -----GLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK-----------FIS----DEW-----MIEKGFL  335 (404)
Q Consensus       281 -----gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~-----------~~~----~~~-----~~~~~~~  335 (404)
                           .|++..|||++++|+.+.+|+.+|+.+|+.|++.+...+...           .++    ..|     ..+..+.
T Consensus       197 ~~~~d~vv~~vGtGGt~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~d~~~~  276 (342)
T 4d9b_A          197 VVGLSSVVVASGSAGTHAGLAVGLEHLMPDVELIGVTVSRSVAEQKPKVIALQQAIAGQLALTATADIHLWDDYFAPGYG  276 (342)
T ss_dssp             TCCCCEEEEEESSSHHHHHHHHHHHHHCTTSEEEEEESSSCHHHHHHHHHHHHHHHHHHTTCCCCCCCEEECTTSTTCTT
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHhhCCCCeEEEEEecCcHHHHHHHHHHHHHHHHHHcCCCCccceEEEecCCCceEe
Confidence                 388889999999999999999999999999999876432110           000    011     2234456


Q ss_pred             CcHHHHHHh-------------cc-chhHHHHHHHHHHh--cCCCCeEEEEEcCC
Q psy14801        336 DEAEELEEM-------------IH-SGTAMHVACQAAKS--LRPDQRCVVILADG  374 (404)
Q Consensus       336 ~~~~~~~~g-------------~S-sGa~~~~a~~~~~~--~~~~~~iv~i~~D~  374 (404)
                      ++|+++..+             .| ||++++++++++++  ++++++||+|+|.+
T Consensus       277 V~d~e~~~a~~~l~~~~gi~~epsYsa~a~aa~~~~~~~~~~~~~~~Vv~i~tGG  331 (342)
T 4d9b_A          277 VPNDAGMEAVKLLASLEGVLLDPVYTGKAMAGLIDGISQKRFNDDGPILFIHTGG  331 (342)
T ss_dssp             CCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHHTCSSSSSCEEEEECCC
T ss_pred             cCCHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHcCCCCCCCeEEEEECCC
Confidence            677766553             26 89999999998874  56789999999875

>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum}

Probab=99.48  E-value=1.1e-14  Score=140.95  Aligned_cols=222  Identities=9%  Similarity=0.094  Sum_probs=137.1

Q ss_pred             CCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCC
Q psy14801        150 KNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQS  227 (404)
Q Consensus       150 ~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~  227 (404)
                      +..+|+ .|+.||.+|.|  +|.+..+++++..+ ....||++||||  +|.++|+.++..|+++++|+|.+.+......
T Consensus        74 g~~i~~K~E~~~ptgSfK--dRga~~~i~~l~~~~~~~~vv~assGN--~g~a~A~aa~~~G~~~~iv~P~~~~~~k~~~  149 (366)
T 3iau_A           74 GVNFYIKREDKQRVFSFK--LRGAYNMMSNLSREELDKGVITASAGN--HAQGVALAGQRLNCVAKIVMPTTTPQIKIDA  149 (366)
T ss_dssp             TSEEEEEEGGGSTTSBTT--HHHHHHHHHTSCHHHHHHCEEEECSSH--HHHHHHHHHHHTTCCEEEEECTTCCHHHHHH
T ss_pred             CCEEEEEecCCCCCcchH--HHHHHHHHHHHHHhCCCCEEEEeCCCH--HHHHHHHHHHHhCCceEEEeCCCCCHHHHHH
Confidence            345666 89999999999  99999999887532 224578889999  9999999999999999999999764321111


Q ss_pred             CCCCCCCCCc-cccccC---CCCcccccccCccccCcEEecChHHHH-HHHHHHHHhcC----cEeccchhhHHHHHHHH
Q psy14801        228 LNDVPENQIS-YNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSEG----LLVGGSSGTAMHVACQA  298 (404)
Q Consensus       228 ~~~~~~~~~~-~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~g----i~~~~~tg~tlag~~~~  298 (404)
                      +......... ......   ....+ .......++.++.+....+-+ ..+.|++++.+    |++..|||++++|+...
T Consensus       150 ~~~~GA~V~~v~~~~~~~~~~a~~~-~~~~~~~~i~~~~n~~~i~g~~t~~~Ei~~q~~~~d~vvvpvG~GG~~~Gi~~~  228 (366)
T 3iau_A          150 VRALGGDVVLYGKTFDEAQTHALEL-SEKDGLKYIPPFDDPGVIKGQGTIGTEINRQLKDIHAVFIPVGGGGLIAGVATF  228 (366)
T ss_dssp             HHHTTCEEEECCSSHHHHHHHHHHH-HHHHTCEECCSSSSHHHHHHHHHHHHHHHHHCCSEEEEEEECSSSHHHHHHHHH
T ss_pred             HHHCCCeEEEECcCHHHHHHHHHHH-HHhcCCEecCCCCChHHHHHHHHHHHHHHHhcCCCCEEEEccCchHHHHHHHHH
Confidence            1111110000 000000   00000 000011122222111111112 23567777644    88899999999999999


Q ss_pred             HHhcCCCCeEEEEecCCCCCc-----------------cccccc------hhH-----HhhcCccCcHHHHHHh------
Q psy14801        299 AKSLRPDQRCVVILADGVRNY-----------------LTKFIS------DEW-----MIEKGFLDEAEELEEM------  344 (404)
Q Consensus       299 lk~~~~~~~vv~v~~~~~~~~-----------------~~~~~~------~~~-----~~~~~~~~~~~~~~~g------  344 (404)
                      +|+..++.+++.|++.+...+                 +...+.      ..|     ..+..+.++|+++.+.      
T Consensus       229 ~k~~~~~~~vigVe~~~~~~l~~~~~~g~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~  308 (366)
T 3iau_A          229 FKQIAPNTKIIGVEPYGAASMTLSLHEGHRVKLSNVDTFADGVAVALVGEYTFAKCQELIDGMVLVANDGISAAIKDVYD  308 (366)
T ss_dssp             HHHHSTTSEEEEEEEGGGCHHHHHHHHTSCCEESCCCCSSGGGCCSSCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHH
T ss_pred             HHHhCCCCeEEEEeecCChHHHHHHHcCCCCcCCCccchhhhhcCCCCcHHHHHHHHhcCCCceeECHHHHHHHHHHHHH
Confidence            999989999999998654211                 001111      111     1223355677666553      


Q ss_pred             -------ccchhHHHHHHHHHHhcC-CCCeEEEEEcCCCc
Q psy14801        345 -------IHSGTAMHVACQAAKSLR-PDQRCVVILADGVR  376 (404)
Q Consensus       345 -------~SsGa~~~~a~~~~~~~~-~~~~iv~i~~D~g~  376 (404)
                             .|||++++++++++++.. ++++||+|+|+++-
T Consensus       309 ~~gi~~ep~sa~alaa~~~~~~~~~~~g~~Vv~i~tGgn~  348 (366)
T 3iau_A          309 EGRNILETSGAVAIAGAAAYCEFYKIKNENIVAIASGANM  348 (366)
T ss_dssp             HHSCCCCHHHHHHHHHHHHHHHHTTCCSCEEEEEECBCCC
T ss_pred             HcCcEEcHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence                   388999999999887643 58999999999865

>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...

Probab=99.43  E-value=2.6e-14  Score=139.77  Aligned_cols=235  Identities=9%  Similarity=-0.014  Sum_probs=140.7

Q ss_pred             HHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhC-CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC-C
Q psy14801        144 RIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTG-GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG-S  220 (404)
Q Consensus       144 ~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~-~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~-~  220 (404)
                      ++.+..+..+|+ .|+.||++|.|  +|.+..++..+. ...+.+|+++||||  +|+++|+.++..|+++++++|.. .
T Consensus        63 ~l~~~~g~~i~lK~E~l~ptGSfK--~R~a~~~~~~a~~~g~~~vi~e~ssGN--hg~a~A~aa~~~G~~~~i~mp~~~~  138 (396)
T 1qop_B           63 NITAGTRTTLYLKREDLLHGGAHK--TNQVLGQALLAKRMGKSEIIAETGAGQ--HGVASALASALLGLKCRIYMGAKDV  138 (396)
T ss_dssp             HHHTTSSEEEEEEEGGGSTTSBTH--HHHHHHHHHHHHHTTCCEEEEEESSSH--HHHHHHHHHHHHTCEEEEEEEHHHH
T ss_pred             hhhhccCCeEEEEeccCCCCCcHH--HHHHHHHHHHHHHcCcCEEEEecCchH--HHHHHHHHHHHCCCcEEEEEcCCch
Confidence            444444456777 89999999988  998887776654 23567888899999  99999999999999999999985 2


Q ss_pred             ccccc--CCCCCCCCCCCccc----cccC-C--CCccccccc-Ccc-ccCc-------------EEecChHHHHHHHHHH
Q psy14801        221 ILAQP--QSLNDVPENQISYN----EVEG-I--GYSFAATTL-DRN-VIDQ-------------WGKCGDKDTFLMARRL  276 (404)
Q Consensus       221 ~~~~~--~~~~~~~~~~~~~~----~~~~-i--~~~~~~~~~-~~~-~~~~-------------~~~v~d~e~~~~~~~l  276 (404)
                      .....  ..+...........    .... +  ....+..+. +.. ..++             ++.+...|++++..+.
T Consensus       139 ~~~~~~~~~~~~~GA~V~~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~n~~p~~~~v~~g~~t~~~Ei~~Ql~~~  218 (396)
T 1qop_B          139 ERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDK  218 (396)
T ss_dssp             HHCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHhccCCcEEEeCCcCCCCCchHHHHHHHhHHHHHHHHHHHHh
Confidence            11000  00000110000000    0000 0  000000000 000 0111             1112223443333211


Q ss_pred             -H-HhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC-------Cccc--------------------------
Q psy14801        277 -I-KSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR-------NYLT--------------------------  321 (404)
Q Consensus       277 -~-~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~-------~~~~--------------------------  321 (404)
                       . .-+.+++..|||++++|+...++. .|..+|+.|++.+..       ..+.                          
T Consensus       219 ~~~~~d~vvvpvG~GG~~~Gi~~~~~~-~~~~~vigVe~~~~~~~~~~~~~~l~~g~~~~~~g~~~~~~~~~~g~~~~~~  297 (396)
T 1qop_B          219 EGRLPDAVIACVGGGSNAIGMFADFIN-DTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESY  297 (396)
T ss_dssp             HSSCCSEEEEECSSSHHHHHHHGGGTT-CTTSEEEEEEEEETBGGGTBSCCHHHHSEEEEETEEEEEECBCTTSCBCCCC
T ss_pred             cCCCCCEEEEcCCchHHHHHHHHHHhc-CCCCEEEEEeCCCccccchhhHHHHHcCCeeeeccchhhhcccccCCcCCCc
Confidence             0 113488999999999999887774 788999999986531       0000                          


Q ss_pred             --------cccchh-H-Hh----hcCccCcHHHHHHh-------------ccchhHHHHHHHHHHhcC-CCCeEEEEEcC
Q psy14801        322 --------KFISDE-W-MI----EKGFLDEAEELEEM-------------IHSGTAMHVACQAAKSLR-PDQRCVVILAD  373 (404)
Q Consensus       322 --------~~~~~~-~-~~----~~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~~~-~~~~iv~i~~D  373 (404)
                              +..+.. + +.    +..+.++|+++.++             .+||++++++.+++++++ ++++||+++||
T Consensus       298 tia~gl~~~~~g~~~~~l~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~~~sa~a~a~a~~l~~~~~~~~~~vv~i~tg  377 (396)
T 1qop_B          298 SISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSG  377 (396)
T ss_dssp             CSSGGGCCSSCCHHHHHHHHTTSSEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHHSTTSCEEEEEEECB
T ss_pred             eeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCCCCeEEEEECC
Confidence                    011111 1 11    22345677766552             388999999999998887 78999999999


Q ss_pred             CCcchhhccC
Q psy14801        374 GVRNYLTKFI  383 (404)
Q Consensus       374 ~g~rYl~~~~  383 (404)
                      +|.||++++.
T Consensus       378 ~g~k~~~~~~  387 (396)
T 1qop_B          378 RGDKDIFTVH  387 (396)
T ss_dssp             BCGGGHHHHH
T ss_pred             CCCCCHHHHH
Confidence            9999999864

>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus}

Probab=99.43  E-value=2.6e-14  Score=140.59  Aligned_cols=229  Identities=12%  Similarity=-0.007  Sum_probs=137.6

Q ss_pred             CcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc---
Q psy14801        151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP---  225 (404)
Q Consensus       151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~---  225 (404)
                      ..+|+ .|+.||++|.|  +|.+..++..+.+ ..+.+|+++|+||  +|+++|+.++..|+++++++|........   
T Consensus        93 ~~i~lK~E~l~ptGSfK--~R~a~~~i~~a~~~g~~~vI~~~ssGN--hg~avA~aaa~~Gi~~~I~mp~~~~~~~~~kv  168 (418)
T 1x1q_A           93 AQVFLKREDLLHTGAHK--INNTLGQALLARRMGKRRVIAETGAGQ--HGVSVATVAALFGLECVVYMGEEDVRRQALNV  168 (418)
T ss_dssp             SEEEEEEGGGSGGGBTT--HHHHHHHHHHHHHHTCCEEEEECSSSH--HHHHHHHHHHHHTCEEEEEEEHHHHHTCHHHH
T ss_pred             ceEEEEEccCCcCccHH--HHHHHHHHHHHHHcCCCEEEEecCchH--HHHHHHHHHHHcCCCEEEEECCCcchhhhHHH
Confidence            45666 89999999988  9998877665431 3467888999999  99999999999999999999975311000   


Q ss_pred             CCCCCCCCCCCcc-----ccccCC--CCccccccc-Ccccc-CcE-------------EecChHHHHHHHHHH-HH-hcC
Q psy14801        226 QSLNDVPENQISY-----NEVEGI--GYSFAATTL-DRNVI-DQW-------------GKCGDKDTFLMARRL-IK-SEG  281 (404)
Q Consensus       226 ~~~~~~~~~~~~~-----~~~~~i--~~~~~~~~~-~~~~~-~~~-------------~~v~d~e~~~~~~~l-~~-~~g  281 (404)
                      ..+..........     ...+..  ....+..+. +..++ +++             ..+...|++++..+. .. -+.
T Consensus       169 ~~~~~~GA~Vv~v~~~~~~~~~a~~~a~~~~~~~~~~~~~i~~~~~n~~p~~~~v~~gq~t~~~Ei~~Ql~~~~~~~~D~  248 (418)
T 1x1q_A          169 FRMKLLGAEVRPVAAGSRTLKDATNEAIRDWITNVRTTFYILGSVVGPHPYPMMVRDFQSVIGEEVKRQSLELFGRLPDA  248 (418)
T ss_dssp             HHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHTTTTEEECCCCSSSSTTHHHHHHHHHTHHHHHHHHHHHHHHSSCCSE
T ss_pred             HHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCccCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCE
Confidence            0001011100000     000000  000000000 00010 111             111123333322211 00 134


Q ss_pred             cEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCCCC-------------cc-------------------c-------
Q psy14801        282 LLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGVRN-------------YL-------------------T-------  321 (404)
Q Consensus       282 i~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~~~-------------~~-------------------~-------  321 (404)
                      +++..|+|++++|+...+|++ .|+.+|+.|++.+...             ..                   .       
T Consensus       249 vvvpvGgGG~~~Gi~~~~k~l~~p~~~vigVe~~g~~~~~~~~~~~l~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~gl  328 (418)
T 1x1q_A          249 LIAAVGGGSNAIGLFAPFAYLPEGRPKLIGVEAAGEGLSTGRHAASIGAGKRGVLHGSYMYLLYDHDGQITPAHSVSAGL  328 (418)
T ss_dssp             EEEECSSSSHHHHHHHHHHTSCTTCCEEEEEEECCTTSSSCHHHHHHHHTCEEEETTEEEEBCCC---------------
T ss_pred             EEEecCCcHhHHHHHHHHHHhCCCCCeEEEEecCCcccccHHHHHHHHcCCeeeeccccccccccccccccCCceeeecc
Confidence            888999999999999999886 7899999999976410             00                   0       


Q ss_pred             --cccchh--HHh----hcCccCcHHHHHHh-------------ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhh
Q psy14801        322 --KFISDE--WMI----EKGFLDEAEELEEM-------------IHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT  380 (404)
Q Consensus       322 --~~~~~~--~~~----~~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~  380 (404)
                        +..+..  ++.    +..+.++|+++.+.             .+||++++++++++++++++++||+++||+|.||++
T Consensus       329 ~~~~~g~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~~~~sa~a~a~a~~~~~~~~~~~~Vv~vlsG~g~kd~~  408 (418)
T 1x1q_A          329 DYPGVGPEHSYYADAGVAEYASVTDEEALEGFKLLARLEGIIPALESAHAIAYAAKVVPEMDKDQVVVINLSGRGDKDVT  408 (418)
T ss_dssp             -CSBCCHHHHHHHHHTSEEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHTTTSCTTCEEEEEECBBGGGTHH
T ss_pred             CCCCCCHHHHHHHhccCeEEEEECHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHhcCCCCeEEEEECCCCCCCHH
Confidence              001111  111    22345777776552             388999999999988777899999999999999999


Q ss_pred             ccC
Q psy14801        381 KFI  383 (404)
Q Consensus       381 ~~~  383 (404)
                      ++.
T Consensus       409 ~~~  411 (418)
T 1x1q_A          409 EVM  411 (418)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            853

>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*

Probab=99.40  E-value=2.2e-13  Score=133.23  Aligned_cols=232  Identities=10%  Similarity=0.063  Sum_probs=135.9

Q ss_pred             HHHhCC-CcEee-cCCCC-CCChhhHHhhHHHHHHHHhC------------------CCcCE-EEEccCCChhHHHHHHH
Q psy14801        145 IASQMK-NAVVL-DQFRN-PNNPLSHYETTAEEILRDTG------------------GKVDM-IVLGCGTGGTASGIGRK  202 (404)
Q Consensus       145 l~~~~~-~~~~~-~e~~n-p~~si~g~~~~a~ei~~q~~------------------~~~~~-vvv~~gsG~~~~Gi~la  202 (404)
                      +.+..+ ..+|+ +|+.| |.+|.|  +|.|..++.++.                  ..... .||++++||  +|+++|
T Consensus        53 l~~~~g~~~i~~K~E~~~~ptgSfK--~Rga~~~i~~~~~~~~G~~~~~l~~e~l~~~~~~~~~vv~aSsGN--hg~a~A  128 (398)
T 4d9i_A           53 LANLFGVKKILVKDESKRFGLNAFX--MLGGAYAIAQLLCEKYHLDIETLSFEHLKNAIGEKMTFATTTDGN--HGRGVA  128 (398)
T ss_dssp             HHHHHTSSEEEEEEGGGSTTTTBST--HHHHHHHHHHHHHHHHTCCGGGCCHHHHHHCCSCCCEEEEECSSH--HHHHHH
T ss_pred             HHHHhCCCcEEEEECCCCCCCCcch--hhhhHHHHHHHHHHhhcccccccchhhhhhhccCCCEEEEECCCH--HHHHHH
Confidence            343333 35777 89999 999999  999998887761                  02233 788899999  999999


Q ss_pred             HHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCc-cccccC---CCCcccccccCccccCcE-E-ecCh--HHHH----
Q psy14801        203 IKEKCPSCKLVGADPFGSILAQPQSLNDVPENQIS-YNEVEG---IGYSFAATTLDRNVIDQW-G-KCGD--KDTF----  270 (404)
Q Consensus       203 ~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~-~~~~~~---i~~~~~~~~~~~~~~~~~-~-~v~d--~e~~----  270 (404)
                      +.++..|+++++|+|.+.+......+......... ......   ....+ .......++.++ + ..++  +..+    
T Consensus       129 ~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~~a~~~a~~~-~~~~g~~~v~~~~~~g~~~~~~~~~~G~~  207 (398)
T 4d9i_A          129 WAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDDTVRLTMQH-AQQHGWEVVQDTAWEGYTKIPTWIMQGYA  207 (398)
T ss_dssp             HHHHHHTCEEEEEECTTCCHHHHHHHHTTTCEEEECSSCHHHHHHHHHHH-HHHHTCEECCSSCBTTBCHHHHHHHHHHH
T ss_pred             HHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHH-HHHcCCEEecCcccCCcCCCCchhhhhHH
Confidence            99999999999999998753211111111111000 000000   00000 000001111110 0 0111  1221    


Q ss_pred             HHHHHHHHh--------cCcEeccchhhHHHHHHHHHHhc--CCCCeEEEEecCCCCCcc--------------ccccch
Q psy14801        271 LMARRLIKS--------EGLLVGGSSGTAMHVACQAAKSL--RPDQRCVVILADGVRNYL--------------TKFISD  326 (404)
Q Consensus       271 ~~~~~l~~~--------~gi~~~~~tg~tlag~~~~lk~~--~~~~~vv~v~~~~~~~~~--------------~~~~~~  326 (404)
                      ..+.|++++        +.|++..|||++++|+..++++.  .+..+|++|+|.+...+.              ...+.+
T Consensus       208 t~~~Ei~~q~~~~g~~~d~vvvpvG~GG~~aGi~~~~k~~~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~tia~  287 (398)
T 4d9i_A          208 TLADEAVEQMREMGVTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIVNVGGDMATIMA  287 (398)
T ss_dssp             HHHHHHHHHHHHTTCCCSEEEEECSSSHHHHHHHHHHHHHHCTTSCEEEEEEETTSCHHHHHHHHTSCCCC------CCT
T ss_pred             HHHHHHHHHhhhcCCCCCEEEEecCccHHHHHHHHHHHHhcCCCCCEEEEEEeCCCchHHHHHHcCCceecCCCCCceec
Confidence            223444443        45888999999999999999775  467899999986642110              011111


Q ss_pred             ----------hH-----HhhcCccCcHHHHHH---------h--------ccchhHHHHHHHHH---------Hh--cCC
Q psy14801        327 ----------EW-----MIEKGFLDEAEELEE---------M--------IHSGTAMHVACQAA---------KS--LRP  363 (404)
Q Consensus       327 ----------~~-----~~~~~~~~~~~~~~~---------g--------~SsGa~~~~a~~~~---------~~--~~~  363 (404)
                                .|     ..+..+.++|+++..         |        .|||++++++++++         ++  +++
T Consensus       288 gl~~~~p~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~eG~~~~i~~epssa~alaa~~~~~~~~~~~~l~~~~~~~~  367 (398)
T 4d9i_A          288 GLACGEPNPLGWEILRNCATQFISCQDSVAALGMRVLGNPYGNDPRIISGESGAVGLGVLAAVHYHPQRQSLMEKLALNK  367 (398)
T ss_dssp             TCCCSSCCHHHHHHHHHHCCEEEEECTHHHHHHHHHHHSCSTTCCCCCCCHHHHHHHHHHHHHHHSTTHHHHHHHTTCCT
T ss_pred             cccCCCCCHHHHHHHHHcCCeEEEECHHHHHHHHHHHHHhhCCCCcEEECchHHHHHHHHHHhhhhhhhHHHHHhcCCCC
Confidence                      12     122334566665543         3        37888999998874         32  567


Q ss_pred             CCeEEEEEcCCCcchhhcc
Q psy14801        364 DQRCVVILADGVRNYLTKF  382 (404)
Q Consensus       364 ~~~iv~i~~D~g~rYl~~~  382 (404)
                      +++||+|++ +|.++++.+
T Consensus       368 ~~~Vv~i~t-GG~~d~~~~  385 (398)
T 4d9i_A          368 DAVVLVIST-EGDTDVKHY  385 (398)
T ss_dssp             TCEEEEEEC-BCCSSHHHH
T ss_pred             CCEEEEEeC-CCCCCHHHH
Confidence            899999999 689998864

>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*

Probab=99.37  E-value=5.5e-13  Score=133.25  Aligned_cols=223  Identities=13%  Similarity=0.071  Sum_probs=133.5

Q ss_pred             cEee-cCCCCCCChhhHHhhHHHHH---HHHh--CCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC-Ccccc
Q psy14801        152 AVVL-DQFRNPNNPLSHYETTAEEI---LRDT--GGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG-SILAQ  224 (404)
Q Consensus       152 ~~~~-~e~~np~~si~g~~~~a~ei---~~q~--~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~-~~~~~  224 (404)
                      .+|+ .|+.||++|.|  ||.+..+   ++++  .+++...||+++|||  +|.++|+.+...|+++++++|.+ .+...
T Consensus       148 ~l~~K~E~~nPTGSFK--DRga~~~~~~l~~~~~~~~g~~~Vv~aSsGN--tG~AlA~~a~~~Gi~~~I~~P~~~~s~~k  223 (486)
T 1e5x_A          148 DLWVKHCGISHTGSFK--DLGMTVLVSQVNRLRKMKRPVVGVGCASTGD--TSAALSAYCASAGIPSIVFLPANKISMAQ  223 (486)
T ss_dssp             SEEEEETTSSTTSBTT--HHHHHHHHHHHHHHHHTTCCCCEEEECCCSH--HHHHHHHHHHHHTCCEEEEEEGGGCCHHH
T ss_pred             cEEEeeccCCCccCHH--HHHHHHHHHHHHHHHHcCCCCeEEEEcCCCH--HHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence            4555 99999999999  8855444   3333  223355778899999  88999999999999999999986 53211


Q ss_pred             cCCCCCCCCCCCc-cccccC---CCCcccccccCccccCcEEecChHHHH----HHHHHHHHhcC------cEeccchhh
Q psy14801        225 PQSLNDVPENQIS-YNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF----LMARRLIKSEG------LLVGGSSGT  290 (404)
Q Consensus       225 ~~~~~~~~~~~~~-~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~----~~~~~l~~~~g------i~~~~~tg~  290 (404)
                      ...+......... ......   +.... .......++++    .|+..+    ..+.+++++.+      |++..|+|+
T Consensus       224 ~~~~~~~GA~vi~v~g~~dd~~~~a~~l-~~~~~~~~vns----~N~~~i~gq~t~~~Ei~~ql~~~~~D~vvvpvG~GG  298 (486)
T 1e5x_A          224 LVQPIANGAFVLSIDTDFDGCMKLIREI-TAELPIYLANS----LNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLG  298 (486)
T ss_dssp             HHHHHHTTCEEEEEESCHHHHHHHHHHH-HHHSCEEEGGG----SHHHHHHHHTHHHHHHHHHTTSCCCSEEEEECSSTH
T ss_pred             HHHHHhCCCEEEEECCCHHHHHHHHHHH-HhcCCEEEeCC----CCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCcHH
Confidence            1111100000000 000000   00000 00000011111    133322    22356666643      888889999


Q ss_pred             HHHHHHHHHHhcC------CCCeEEEEecCCCCC-----------cc--------ccccc-------hhH--Hhhc----
Q psy14801        291 AMHVACQAAKSLR------PDQRCVVILADGVRN-----------YL--------TKFIS-------DEW--MIEK----  332 (404)
Q Consensus       291 tlag~~~~lk~~~------~~~~vv~v~~~~~~~-----------~~--------~~~~~-------~~~--~~~~----  332 (404)
                      +++|+.+.+++..      +..++++|.+.+...           |.        .+.++       +..  ..+.    
T Consensus       299 ~i~Gi~~a~k~~~~~Gli~p~~rvi~Ve~~~~~~l~~~~~~G~~~~~~~~~~~t~a~gi~i~~p~~~~~~~~~~~~~~g~  378 (486)
T 1e5x_A          299 NIYAFYKGFKXCQELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQIGDPVSIDRAVYALKKCNGI  378 (486)
T ss_dssp             HHHHHHHHHHHHHHTTSSSCCCEEEEEEETTSSTHHHHHHTTTTTCCC----------------CCCHHHHHHHHHTTCE
T ss_pred             HHHHHHHHHHHhhhhccCCCCCEEEEEecCCCchHHHHHHcCCCccccCCCCCeeCccccCCCCccHHHHHHHHhccCCe
Confidence            9999999988753      678999999865321           11        11110       000  1222    


Q ss_pred             CccCcHHHHHHh------------ccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchhhccC
Q psy14801        333 GFLDEAEELEEM------------IHSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLTKFI  383 (404)
Q Consensus       333 ~~~~~~~~~~~g------------~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl~~~~  383 (404)
                      ...++|+++..+            .|||++++++++++++  +.++++||++++++|.||+++++
T Consensus       379 ~~~Vsd~e~~~ai~l~~~eGi~~ePssA~alaa~~~~~~~g~~~~~~~vV~i~Tg~~~k~~~~v~  443 (486)
T 1e5x_A          379 VEEATEEELMDAMAQADSTGMFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSKI  443 (486)
T ss_dssp             EEEECHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTSSCTTCCEEEEECBCGGGGHHHHH
T ss_pred             EEEECHHHHHHHHHHHHHCCeEEChhHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCccCHHHHH
Confidence            345677666543            2889999999998876  35788999999999999999865

>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*

Probab=99.35  E-value=2.2e-13  Score=130.46  Aligned_cols=168  Identities=15%  Similarity=0.236  Sum_probs=111.1

Q ss_pred             HHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC----c-CEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCC
Q psy14801        145 IASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK----V-DMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPF  218 (404)
Q Consensus       145 l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~----~-~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~  218 (404)
                      +.+..+..+|+ +|+.||++|.|  +|.|+.++.++.++    | ...||++++||  +|+++|+.++..|+++++|+|+
T Consensus        44 Ls~~~G~~IylK~E~lnptGSfK--~RgA~~~i~~a~~~g~l~~g~~~Vv~aSsGN--~g~alA~~aa~~G~~~~IvmP~  119 (344)
T 3vc3_A           44 VTEGCGAYVAVKQEMMQPTASIA--DRPAYAMITDAEEKNLITPGKTTLIEPTSGN--MGISMAFMAAMKGYKMVLTMPS  119 (344)
T ss_dssp             TTTTCCSEEEEEEGGGSTTSBTT--HHHHHHHHHHHHHTTCCCTTTCEEEEECSSH--HHHHHHHHHHHHTCEEEEEEET
T ss_pred             cchhhCCEEEEEecCCCCCCCcH--HHHHHHHHHHHHHcCCCCCCCCEEEEeCCcH--HHHHHHHHHHHcCCcEEEEECC
Confidence            44444556777 89999999999  99999999887532    4 35889999999  9999999999999999999999


Q ss_pred             CCcccccCCCCCCCCCCCccccccCCC------CcccccccCccccCcEEecChHHHH--HHHHHHHHhcC-----cEec
Q psy14801        219 GSILAQPQSLNDVPENQISYNEVEGIG------YSFAATTLDRNVIDQWGKCGDKDTF--LMARRLIKSEG-----LLVG  285 (404)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~~~v~d~e~~--~~~~~l~~~~g-----i~~~  285 (404)
                      +.+......+..............+..      ........+..+.+++.+..+.++.  ..+.||+++.+     ++++
T Consensus       120 ~~~~~k~~~~~~~GA~Vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~~~a~~~t~g~EI~eq~~~~~d~vv~~  199 (344)
T 3vc3_A          120 YTSLERRVTMRAFGAELILTDPAKGMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMG  199 (344)
T ss_dssp             TSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHSTTEECCCTTTCHHHHHHHHHTHHHHHHHHTTTCCCEEEEE
T ss_pred             CChHHHHHHHHHcCCEEEEECCCCcchHHHHHHHHHHhhccCceeccccccchhHHHHHHHHHHHHHHHhCCCceEEEEe
Confidence            875432211111111110000000000      0000001111233343333344442  34567777764     8889


Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14801        286 GSSGTAMHVACQAAKSLRPDQRCVVILADGV  316 (404)
Q Consensus       286 ~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~  316 (404)
                      .|||++++|+.+++|+..|+.+|+.|+|.+.
T Consensus       200 vGgGG~~~Gi~~~~k~~~p~v~vigVep~~s  230 (344)
T 3vc3_A          200 IGSGGTVSGVGQYLKSKNPNVKIYGVEPSES  230 (344)
T ss_dssp             CSSSHHHHHHHHHHHHHCTTCEEEEEEEGGG
T ss_pred             cCCccchHHHhhhhHhhCCCceEEEEcCCCC
Confidence            9999999999999999999999999998653

>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A

Probab=99.35  E-value=1.1e-13  Score=136.11  Aligned_cols=228  Identities=12%  Similarity=0.003  Sum_probs=131.5

Q ss_pred             CcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc---
Q psy14801        151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP---  225 (404)
Q Consensus       151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~---  225 (404)
                      ..+|+ .|+.||++|.|  +|.+..++..+.+ ..+.+|+++|+||  +|+++|+.++..|+++++++|........   
T Consensus        97 ~~i~lK~E~lnptGSfK--~R~a~~~~~~a~~~g~~~vI~~~ssGN--hG~A~A~aaa~~G~~~~I~mp~~~~~~q~~kv  172 (422)
T 2o2e_A           97 ARIFLKREDLNHTGSHK--INNVLGQALLARRMGKTRVIAETGAGQ--HGVATATACALLGLDCVIYMGGIDTARQALNV  172 (422)
T ss_dssp             CEEEEECGGGCCSSTTH--HHHHHHHHHHHHHTTCCEEEEEESSSH--HHHHHHHHHHHHTCEEEEEEEHHHHHHSHHHH
T ss_pred             CeEEEEEcCCCCCCcHH--HHHHHHHHHHHHHcCCCeEEEecCccH--HHHHHHHHHHHcCCcEEEEeCCCcchhhHHHH
Confidence            45666 89999999988  9988877665442 3567888999999  99999999999999999999975321000   


Q ss_pred             CCCCCCCCCCCcc-----ccccCC--CCccccccc-Cccc-cCcE-------------EecChHHHHHHHHHHHH--hcC
Q psy14801        226 QSLNDVPENQISY-----NEVEGI--GYSFAATTL-DRNV-IDQW-------------GKCGDKDTFLMARRLIK--SEG  281 (404)
Q Consensus       226 ~~~~~~~~~~~~~-----~~~~~i--~~~~~~~~~-~~~~-~~~~-------------~~v~d~e~~~~~~~l~~--~~g  281 (404)
                      ..+..........     ...+.+  ....+..+. +..+ .+++             ..+...|++++..+...  -+.
T Consensus       173 ~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~yi~~s~~g~~p~~~~v~~~q~t~g~Ei~~Ql~~~~~~~pD~  252 (422)
T 2o2e_A          173 ARMRLLGAEVVAVQTGSKTLKDAINEAFRDWVANADNTYYCFGTAAGPHPFPTMVRDFQRIIGMEARVQIQGQAGRLPDA  252 (422)
T ss_dssp             HHHHHTTCEEEEECSTTSCHHHHHHHHHHHHHHHTTTEEECCCCSSSCCCCHHHHHHHTTHHHHHHHHHHHHHSSSCCSE
T ss_pred             HHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCcEEEeCCccCCCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCCE
Confidence            0000011100000     000000  000000000 0001 0111             11111333322211000  134


Q ss_pred             cEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC-------Ccccc--------------------------------
Q psy14801        282 LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR-------NYLTK--------------------------------  322 (404)
Q Consensus       282 i~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~-------~~~~~--------------------------------  322 (404)
                      +++..|+|++++|+...+++ .|..+|+.|++.+..       ..+..                                
T Consensus       253 vvvpvG~GG~~~Gi~~~~~~-~p~v~vigVe~~g~~~~~~~~~~~l~~g~~~~~~g~~~~~~~~~~g~~~~~~tia~gl~  331 (422)
T 2o2e_A          253 VVACVGGGSNAIGIFHAFLD-DPGVRLVGFEAAGDGVETGRHAATFTAGSPGAFHGSFSYLLQDEDGQTIESHSISAGLD  331 (422)
T ss_dssp             EEEEGGGHHHHHTTSGGGTT-CTTCEEEEEEECC----------------------------------------------
T ss_pred             EEEccCCchhHHHHHHHHhc-CCCCeEEEEecCCCcccchhHHHHHHcCCceeccccchhhcccccccccCCceeecccC
Confidence            88899999999998544433 688999999997631       11100                                


Q ss_pred             --ccchh--HHh----hcCccCcHHHHHHh-------------ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhc
Q psy14801        323 --FISDE--WMI----EKGFLDEAEELEEM-------------IHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK  381 (404)
Q Consensus       323 --~~~~~--~~~----~~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~  381 (404)
                        ..+..  ++.    +..+.++|+++.+.             .+||+++++++++++++.++++||+++||+|.||+++
T Consensus       332 ~~~~g~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~~esa~A~a~a~~l~~~~~~~~~vvvilsG~g~kd~~~  411 (422)
T 2o2e_A          332 YPGVGPEHAWLKEAGRVDYRPITDSEAMDAFGLLCRMEGIIPAIESAHAVAGALKLGVELGRGAVIVVNLSGRGDKDVET  411 (422)
T ss_dssp             ---------------CCEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCTTCEEEEECCSCSSSHHHH
T ss_pred             CCCCCHHHHHHHHhCCeeEEEECHHHHHHHHHHHHHHcCCccCchHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHH
Confidence              00000  111    22245677666552             3888999999999988878999999999999999998


Q ss_pred             cC
Q psy14801        382 FI  383 (404)
Q Consensus       382 ~~  383 (404)
                      +.
T Consensus       412 ~~  413 (422)
T 2o2e_A          412 AA  413 (422)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1

Probab=99.30  E-value=4.4e-12  Score=124.94  Aligned_cols=223  Identities=11%  Similarity=0.055  Sum_probs=131.7

Q ss_pred             EeecCCC-CCCChhhHHhhHHHHH---HHHhCCCcCEEEEccCCChhHHHHHHH-HHHhCCCcEEEEEcCCC-CcccccC
Q psy14801        153 VVLDQFR-NPNNPLSHYETTAEEI---LRDTGGKVDMIVLGCGTGGTASGIGRK-IKEKCPSCKLVGADPFG-SILAQPQ  226 (404)
Q Consensus       153 ~~~~e~~-np~~si~g~~~~a~ei---~~q~~~~~~~vvv~~gsG~~~~Gi~la-~~~~~~~~~vi~V~p~~-~~~~~~~  226 (404)
                      +|+.|.+ ||+++.|  +|.+..|   ++++.+....+|++++|||  +|+++| ..+...|+++++++|++ .+.....
T Consensus        93 i~~~E~~~~pTgSfK--dr~a~~l~~~l~~a~~~~~~~Iv~atsGN--tG~A~A~~~a~~~G~~~~I~~P~~~~s~~k~~  168 (428)
T 1vb3_A           93 VGCLELFHGPTLAFK--DFGGRFMAQMLTHIAGDKPVTILTATSGD--TGAAVAHAFYGLPNVKVVILYPRGKISPLQEK  168 (428)
T ss_dssp             EEEEECCCSTTSBTH--HHHHHHHHHHHHHHTTTCCEEEEEECSSS--HHHHHHHHTTTCTTEEEEEEEETTCSCHHHHH
T ss_pred             eEEeeccCCCcccHH--HHHHHHHHHHHHHHHhcCCCEEEecCCch--HHHHHHHHHhhhcCCeEEEEECCCCCCHHHHH
Confidence            4455555 7999999  9998877   4555334677899999999  999999 58899999999999995 5322111


Q ss_pred             CCCCCCCCCCccccccC-CCC--cccccccCc-----cccCcEEecChHHHH----HHHHHHHHhc--------CcEecc
Q psy14801        227 SLNDVPENQISYNEVEG-IGY--SFAATTLDR-----NVIDQWGKCGDKDTF----LMARRLIKSE--------GLLVGG  286 (404)
Q Consensus       227 ~~~~~~~~~~~~~~~~~-i~~--~~~~~~~~~-----~~~~~~~~v~d~e~~----~~~~~l~~~~--------gi~~~~  286 (404)
                      .+...++.... ....+ ...  .........     ...-...+-.|+..+    ....+++++.        .|++..
T Consensus       169 ~m~~~GA~V~~-v~v~g~~d~~~~~~~~~~~d~~~~~~~~~~~~n~~n~~~~~gq~t~~~Ei~~ql~~~g~~~d~vvvpv  247 (428)
T 1vb3_A          169 LFCTLGGNIET-VAIDGDFDACQALVKQAFDDEELKVALGLNSANSINISRLLAQICYYFEAVAQLPQETRNQLVVSVPS  247 (428)
T ss_dssp             HHHSCCTTEEE-EEEESCHHHHHHHHHHGGGCHHHHHHHTEECCSTTSHHHHHHTTHHHHHHHTTSCTTTTTSEEEEEEC
T ss_pred             HHHhcCCeEEE-EEeCCCHHHHHHHHHHHHhchhhhhhcCeeeCCCCCHHHHHHHHHHHHHHHHHcccccCCCCEEEEeC
Confidence            11111111100 00000 000  000000000     000000111233221    2345555543        388888


Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEecCCC--------CCc--------cccccc-------hh-H--H--------hhc
Q psy14801        287 SSGTAMHVACQAAKSLRPDQRCVVILADGV--------RNY--------LTKFIS-------DE-W--M--------IEK  332 (404)
Q Consensus       287 ~tg~tlag~~~~lk~~~~~~~vv~v~~~~~--------~~~--------~~~~~~-------~~-~--~--------~~~  332 (404)
                      |+||+++|+...++...|..+++++.+.+.        ..|        +...++       +. +  +        .+.
T Consensus       248 G~GG~i~G~~~a~~~g~p~~kii~a~~~~~~l~~~~~~G~~~~~~~~~tis~g~~i~~p~~~~~~~~l~~~~~~~~~~~~  327 (428)
T 1vb3_A          248 GNFGDLTAGLLAKSLGLPVKRFIAATNVNDTVPRFLHDGQWSPKATQATLSNAMDVSQPNNWPRVEELFRRKIWQLKELG  327 (428)
T ss_dssp             SSCHHHHHHHHHHHTTCCCSEEEEEECSCCHHHHHHHHSCCCCCCCCCCSSGGGCCSSCTTHHHHHHHHHHTTCCGGGSE
T ss_pred             CchHHHHHHHHHHHcCCCCCeEEeecCCChHHHHHHHcCCcccCCCCCcccchhcCCCCccHHHHHHHHhcchhhhhCcE
Confidence            999999999988877667778999875432        011        011110       00 1  1        123


Q ss_pred             CccCcHHHHHHh------------ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhccC
Q psy14801        333 GFLDEAEELEEM------------IHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFI  383 (404)
Q Consensus       333 ~~~~~~~~~~~g------------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~~~  383 (404)
                      ...++|+++.+.            .|||+++++++++++   ++++||++++|+|.||+++++
T Consensus       328 ~~~Vsd~e~~~a~~~l~~eGi~~~p~sa~a~aa~~~~~~---~~~~vV~i~tg~~~K~~~~v~  387 (428)
T 1vb3_A          328 YAAVDDETTQQTMRELKELGYTSEPHAAVAYRALRDQLN---PGEYGLFLGTAHPAKFKESVE  387 (428)
T ss_dssp             EEECCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTCC---TTCEEEEEECBCGGGGHHHHH
T ss_pred             EEEECHHHHHHHHHHHHHCCeEECchHHHHHHHHHHHhC---CCCcEEEEeCCCCCCCHHHHH
Confidence            345777666543            288889998888754   678999999999999999874

>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A

Probab=99.28  E-value=1.2e-12  Score=129.40  Aligned_cols=220  Identities=11%  Similarity=0.006  Sum_probs=133.8

Q ss_pred             CcEee-cCCCCC-CChhhHHhhHHHHHHHH-----hC--C--CcC-----------------EEEEccCCChhHHHHHHH
Q psy14801        151 NAVVL-DQFRNP-NNPLSHYETTAEEILRD-----TG--G--KVD-----------------MIVLGCGTGGTASGIGRK  202 (404)
Q Consensus       151 ~~~~~-~e~~np-~~si~g~~~~a~ei~~q-----~~--~--~~~-----------------~vvv~~gsG~~~~Gi~la  202 (404)
                      ..+|+ +|+.|| ++|.|  +|.|..++.+     +.  +  .|+                 ..|+++++||  +|+++|
T Consensus       101 ~~v~lK~E~~~p~tGSfK--~Rga~~~i~~l~~~~a~~~G~l~~g~~~~~l~~~~~r~~~~~~~vv~aSsGN--hg~avA  176 (442)
T 3ss7_X          101 GQLLLKKDSHLPISGSIK--ARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGN--LGLSIG  176 (442)
T ss_dssp             SEEEEEEGGGCTTTSBTH--HHHHHHHHHHHHHHHHHHTTSCCTTSCGGGGGSHHHHHHHHTSEEEEECSSH--HHHHHH
T ss_pred             CeEEEeecCCCCCCCCcH--HHHHHHHHHHHhHHHHHHcCCCCCCcchhhhhhhhhhhhccCcEEEEECCCH--HHHHHH
Confidence            45776 899999 89999  9999887754     22  1  133                 3899999999  999999


Q ss_pred             HHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCC--cccc----------ccCCCCcccccccCccccCcEEecChHHHH
Q psy14801        203 IKEKCPSCKLVGADPFGSILAQPQSLNDVPENQI--SYNE----------VEGIGYSFAATTLDRNVIDQWGKCGDKDTF  270 (404)
Q Consensus       203 ~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~--~~~~----------~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~  270 (404)
                      +.++..|+++++|+|.+.+......+........  ....          ....+..++..+.+..++-.++.+      
T Consensus       177 ~~aa~~G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v~~~~~~a~~~a~~~a~~~~~~~~i~~~n~~~~~~G~~t------  250 (442)
T 3ss7_X          177 IMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGVAVEEGRKAAQSDPNCFFIDDENSRTLFLGYSV------  250 (442)
T ss_dssp             HHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEESSCHHHHHHHHHHHHHTCTTEEECCTTTCHHHHHHHHH------
T ss_pred             HHHHHhCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhCCCceeCCCCChHHHHHHHHH------
Confidence            9999999999999999865321111111111000  0000          000000011001111011111122      


Q ss_pred             HHHHHHHHhc-------------CcEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCCCCc------------ccccc
Q psy14801        271 LMARRLIKSE-------------GLLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGVRNY------------LTKFI  324 (404)
Q Consensus       271 ~~~~~l~~~~-------------gi~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~~~~------------~~~~~  324 (404)
                       .+.|++++.             .+++..|+|++++|+...+|+. +++.+|++|+|.+...+            ..+.+
T Consensus       251 -~g~Ei~eQl~~~g~~vD~~~Pd~VvvpvG~GG~~aGi~~~lk~~~~~~v~vigVep~~~~~~~~~~~~G~~~~~~v~~~  329 (442)
T 3ss7_X          251 -AGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGLHDQISVQDI  329 (442)
T ss_dssp             -HHHHHHHHHHHHTCCCBTTBCEEEEEECSSSHHHHHHHHHHHHHHGGGEEEEEEEETTCCHHHHHHHHSCGGGCBGGGG
T ss_pred             -HHHHHHHHHHhhcCcccccCCCEEEEEeCCchHHHHHHHHHHHhcCCCCEEEEEEeCCchHHHHHHhcCCCceeeeccC
Confidence             234444432             3677889999999999999986 78899999998765321            00000


Q ss_pred             ----------------ch---hHH---hhcCccCcHHHHHHh-------------ccchhHHHHHHHHHHh--------c
Q psy14801        325 ----------------SD---EWM---IEKGFLDEAEELEEM-------------IHSGTAMHVACQAAKS--------L  361 (404)
Q Consensus       325 ----------------~~---~~~---~~~~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~--------~  361 (404)
                                      +.   .++   .+..+.++|+++..+             .|||++++++++++++        +
T Consensus       330 g~~~~TiAdgl~v~~~~~~~~~~~~~~~d~~~~Vsd~e~~~a~~~L~~~eGi~~epssaaalAa~~~l~~~~~~~~~~~l  409 (442)
T 3ss7_X          330 GIDNLTAADGLAVGRASGFVGRAMERLLDGFYTLSDQTMYDMLGWLAQEEGIRLEPSALAGMAGPQRVCASVSYQQMHGF  409 (442)
T ss_dssp             TCCCCCSCGGGCCSBCCSSHHHHHGGGCCEEEEECHHHHHHHHHHHHHHHCCCCCGGGGGGGGHHHHHHHCHHHHHHHTC
T ss_pred             CCchhhHHhhcCCCCCchhHHHHHHhhCCeEEEECHHHHHHHHHHHHHHCCCeEcHHHHHHHHHHHHHHhchhhHHhcCC
Confidence                            00   111   123355777776653             3899999999998862        2


Q ss_pred             CC----CCeEEEEEcCCCcchhhc
Q psy14801        362 RP----DQRCVVILADGVRNYLTK  381 (404)
Q Consensus       362 ~~----~~~iv~i~~D~g~rYl~~  381 (404)
                      .+    +++||++.+-+|.+..+.
T Consensus       410 ~~~~~~~~~vv~i~TGG~~~~~~~  433 (442)
T 3ss7_X          410 SAEQLRNTTHLVWATGGGMVPEEE  433 (442)
T ss_dssp             CHHHHHTCEEEEEECBCTTCCHHH
T ss_pred             CcccCCCCeEEEEECCCCCCCHHH
Confidence            22    789999999999887664

>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*

Probab=99.17  E-value=1.6e-11  Score=120.63  Aligned_cols=162  Identities=12%  Similarity=0.186  Sum_probs=104.6

Q ss_pred             CcEee-cCCCCCCChhhHHhhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc
Q psy14801        151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP  225 (404)
Q Consensus       151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~  225 (404)
                      ..+|+ .|+.||++|.|  +|.+..++.++.+    +|+.+||++++||  +|+++|+.++..|+++++|+|++.+....
T Consensus       125 ~~v~lK~E~~nptGSfK--dR~a~~~i~~a~~~G~l~~g~tVV~aSsGN--~G~AlA~aaa~~Gi~~~IvmP~~~s~~k~  200 (435)
T 1jbq_A          125 CELLAKCEFFNAGGSVK--DRISLRMIEDAERDGTLKPGDTIIEPTSGN--TGIGLALAAAVRGYRCIIVMPEKMSSEKV  200 (435)
T ss_dssp             SEEEEEEGGGSTTSBTH--HHHHHHHHHHHHHHTCSCTTCEEEEECSSH--HHHHHHHHHHHHTCEEEEEECSCCCHHHH
T ss_pred             ceEEEEECCCCCcCCHH--HHHHHHHHHHHHHcCCCCCCCEEEEeCCCH--HHHHHHHHHHHcCCeEEEEeCCCCCHHHH
Confidence            35777 89999999999  9999999887652    2567899999999  99999999999999999999998743211


Q ss_pred             CCCCCCCCCCCccc---cccCCC------CcccccccCccccCcEEecChHHHH--HHHHHHHHhc-----CcEeccchh
Q psy14801        226 QSLNDVPENQISYN---EVEGIG------YSFAATTLDRNVIDQWGKCGDKDTF--LMARRLIKSE-----GLLVGGSSG  289 (404)
Q Consensus       226 ~~~~~~~~~~~~~~---~~~~i~------~~~~~~~~~~~~~~~~~~v~d~e~~--~~~~~l~~~~-----gi~~~~~tg  289 (404)
                      ..+...........   ......      ..+.....+..+++++.+..++.+.  .++.||+++.     .|++..|||
T Consensus       201 ~~l~~~GAeVv~v~~~~~~d~~~~~~~~a~~la~~~~~~~~i~q~~n~~n~~ag~~t~a~EI~eQl~~~~D~vVvpvGtG  280 (435)
T 1jbq_A          201 DVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTG  280 (435)
T ss_dssp             HHHHHTTCEEEECCC-------CCHHHHHHHHHHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSS
T ss_pred             HHHHhCCCEEEEecCCCCcchHHHHHHHHHHHHHhcCCeEEeCccCCcccHHHHHHHHHHHHHHHcCCCCCEEEEecCCc
Confidence            11111110000000   000000      0000000011122333333333332  3356776664     388999999


Q ss_pred             hHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14801        290 TAMHVACQAAKSLRPDQRCVVILADGV  316 (404)
Q Consensus       290 ~tlag~~~~lk~~~~~~~vv~v~~~~~  316 (404)
                      ++++|+.+.+|+..|+.+|++|++.+.
T Consensus       281 GtlaGi~~~lk~~~p~vrVigVep~gs  307 (435)
T 1jbq_A          281 GTITGIARKLKEKCPGCRIIGVDPEGS  307 (435)
T ss_dssp             HHHHHHHHHHHHHCTTCEEEEEEETTC
T ss_pred             HhHHHHHHHHHHhCCCCEEEEEecCCc
Confidence            999999999999889999999999765

>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1

Probab=98.95  E-value=9.4e-09  Score=102.77  Aligned_cols=158  Identities=15%  Similarity=0.105  Sum_probs=88.2

Q ss_pred             cEeecCCCCCCChhhHHhhHHHHH---HHHhC---C-------CcCEEEEccCCChhHHHHHHHHHH--hCCCcEEEEEc
Q psy14801        152 AVVLDQFRNPNNPLSHYETTAEEI---LRDTG---G-------KVDMIVLGCGTGGTASGIGRKIKE--KCPSCKLVGAD  216 (404)
Q Consensus       152 ~~~~~e~~np~~si~g~~~~a~ei---~~q~~---~-------~~~~vvv~~gsG~~~~Gi~la~~~--~~~~~~vi~V~  216 (404)
                      .++..+|.||++|.|  ||.+.-|   ++++.   +       ++..+|++++|||  +|++ ++.+  ...|+++++++
T Consensus       110 l~~K~e~~nPTgSFK--Drga~~~~~~~~~a~~~~g~~~~~~~~~~~~Iv~ATSGN--tG~A-A~~a~a~~~Gi~~~I~~  184 (514)
T 1kl7_A          110 LHILELFHGPTYAFK--DVALQFVGNLFEYFLQRTNANLPEGEKKQITVVGATSGD--TGSA-AIYGLRGKKDVSVFILY  184 (514)
T ss_dssp             EEEEECCCSTTSBTH--HHHHHHHHHHHHHHHHHHHTTSCSSSCCCEEEEEECSSS--HHHH-HHHHHTTCTTEEEEEEE
T ss_pred             hhhhhhccCCCCcHH--HHHHHHHHHHHHHHHHhcCCccccccCCCCEEEECCCCc--HHHH-HHHHHHhhcCCeEEEEE
Confidence            344489999999999  9999887   44431   1       2578999999999  8888 6666  78999999999


Q ss_pred             CCC-CcccccCCCCC-CCCCCCccccccC-------CCCccccc-ccCccccCcEEecChHH------H--HHHHHHHHH
Q psy14801        217 PFG-SILAQPQSLND-VPENQISYNEVEG-------IGYSFAAT-TLDRNVIDQWGKCGDKD------T--FLMARRLIK  278 (404)
Q Consensus       217 p~~-~~~~~~~~~~~-~~~~~~~~~~~~~-------i~~~~~~~-~~~~~~~~~~~~v~d~e------~--~~~~~~l~~  278 (404)
                      |++ .+......+.. ...... .....+       +....... .+...+.-.+.+-.|+.      .  +++..+++.
T Consensus       185 P~~~~S~~q~~qm~~~~g~~~~-vv~v~g~fdda~~~vk~l~~~~~~~~~~~~~~~Ns~N~~ri~gQ~tyy~e~~~ql~~  263 (514)
T 1kl7_A          185 PTGRISPIQEEQMTTVPDENVQ-TLSVTGTFDNCQDIVKAIFGDKEFNSKHNVGAVNSINWARILAQMTYYFYSFFQATN  263 (514)
T ss_dssp             ETTSSCHHHHHHHHHCCCTTEE-EEEESSCHHHHHHHHHHHHHCSSCC--CCBCCCCSCCHHHHHHHHHHHHHHHHHHHS
T ss_pred             cCCCCCHHHHHHHhhhcCCCEE-EEEcCCCHHHHHHHHHHHHhcccccccceeEeeCCCCHhHHhhHHHHHHHHHHHHhh
Confidence            997 43211111100 000000 000000       00000000 00000000122222443      1  244455543


Q ss_pred             h-----cCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14801        279 S-----EGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADG  315 (404)
Q Consensus       279 ~-----~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~  315 (404)
                      .     +.|++..|+||++.|...+.+.-.|-.+++++.+.+
T Consensus       264 ~~~~~~d~~vvP~GngG~i~a~~~ak~~G~p~~rli~v~~~n  305 (514)
T 1kl7_A          264 GKDSKKVKFVVPSGNFGDILAGYFAKKMGLPIEKLAIATNEN  305 (514)
T ss_dssp             SSSCCCEEEEEECSSSHHHHHHHHHHHHTCCCCCEEEEECSC
T ss_pred             hcCCCCcEEEEECCchHHHHHHHHHHHcCCCCCEEEEEeCCc
Confidence            2     248888899999999875444334667999998864

>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV}

Probab=98.65  E-value=1.1e-07  Score=93.81  Aligned_cols=66  Identities=14%  Similarity=0.188  Sum_probs=52.2

Q ss_pred             cEeecCCCCCCChhhHHhhHHHHH---HHHhC--CCcCEEEEccCCChhHHH-HHHHHHHhCCCcEEEEEcCCC-Cc
Q psy14801        152 AVVLDQFRNPNNPLSHYETTAEEI---LRDTG--GKVDMIVLGCGTGGTASG-IGRKIKEKCPSCKLVGADPFG-SI  221 (404)
Q Consensus       152 ~~~~~e~~np~~si~g~~~~a~ei---~~q~~--~~~~~vvv~~gsG~~~~G-i~la~~~~~~~~~vi~V~p~~-~~  221 (404)
                      .++..+|.||++|.|  ||.+..+   ++++.  ......|++++|||  +| .+++..+...|+++++++|++ .+
T Consensus       103 ~~~kee~~~PTgSFK--DRga~~~~~~l~~a~~~~g~~~~Vv~ASSGN--tG~aa~aa~a~~~Gi~~~I~~P~~~~s  175 (468)
T 4f4f_A          103 EFVLELFHGPTLAFK--DVAMQLLARMMDYVLAQRGERATIVGATSGD--TGGAAIEAFGGRDNTDIFILFPNGRVS  175 (468)
T ss_dssp             EEEEECCCSTTSBTH--HHHHHHHHHHHHHHHHHTTCCEEEEEECSSH--HHHHHHHHHTTCSSEEEEEEEETTCSC
T ss_pred             eehHHhccCCcccHH--HHHHHHHHHHHHHHHHhcCCCcEEEEECCch--HHHHHHHHHHhccCCcEEEEeCCCCCC
Confidence            344589999999999  9999888   66542  22356899999999  88 566666778999999999998 54

>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis}

Probab=98.39  E-value=6.8e-07  Score=88.39  Aligned_cols=65  Identities=12%  Similarity=0.193  Sum_probs=50.9

Q ss_pred             EeecCCCCCCChhhHHhhHHHHH---HHHhC--CCcCEEEEccCCChhHHHHHHHHHHh-CCCcEEEEEcCCC-Cc
Q psy14801        153 VVLDQFRNPNNPLSHYETTAEEI---LRDTG--GKVDMIVLGCGTGGTASGIGRKIKEK-CPSCKLVGADPFG-SI  221 (404)
Q Consensus       153 ~~~~e~~np~~si~g~~~~a~ei---~~q~~--~~~~~vvv~~gsG~~~~Gi~la~~~~-~~~~~vi~V~p~~-~~  221 (404)
                      ++..+|.||++|.|  ||.+.-+   ++.+.  ......|++++|||  +|.+.+...+ ..|+++++++|++ .+
T Consensus       117 ~vkee~~~PTgSFK--DRga~~~~~ll~~a~~~~g~~~~Vv~ASSGN--tG~Aaa~a~~~~~Gi~~~I~~P~~~~s  188 (487)
T 3v7n_A          117 SLLELSNGPTLAFK--DMAMQLLGNLFEYTLAKHGETLNILGATSGD--TGSAAEYAMRGKEGVRVFMLSPHKKMS  188 (487)
T ss_dssp             EEEECCCSTTSBTH--HHHHHHHHHHHHHHHHTTTCCEEEEEECSSH--HHHHHHHHHTTCTTEEEEEEEETTCSC
T ss_pred             eHHhhccCCcCcHH--HHHHHHHHHHHHHHHHhcCCCcEEEEeCChH--HHHHHHHHHHhccCCeEEEEECCCCCC
Confidence            44589999999999  9998887   77762  22456799999999  8877444443 7899999999997 54

>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2

Probab=93.70  E-value=1  Score=38.04  Aligned_cols=76  Identities=26%  Similarity=0.354  Sum_probs=57.9

Q ss_pred             CCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEe-------cC--CCCHHHHHHHHH
Q psy14801         48 NPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVM-------PM--KMSKEKVYTMKA  118 (404)
Q Consensus        48 ~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~-------p~--~~~~~k~~~l~~  118 (404)
                      +|.--+-+..+...+.+|.+.|..   ..||.+|+|.++..++-..  .|++.++|-       |.  ..+++.++.|+.
T Consensus        22 ~~G~eNT~~tl~la~era~e~~Ik---~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~   96 (201)
T 1vp8_A           22 KPGRENTEETLRLAVERAKELGIK---HLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRK   96 (201)
T ss_dssp             SCSGGGHHHHHHHHHHHHHHHTCC---EEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHcCCC---EEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHh
Confidence            455556677888888999998851   3455555899997766644  789999988       42  578999999999


Q ss_pred             cCCEEEEeCC
Q psy14801        119 LGAKIIRTQN  128 (404)
Q Consensus       119 ~Ga~v~~v~~  128 (404)
                      .|.+|+....
T Consensus        97 ~G~~V~t~tH  106 (201)
T 1vp8_A           97 RGAKIVRQSH  106 (201)
T ss_dssp             TTCEEEECCC
T ss_pred             CCCEEEEEec
Confidence            9999998765

>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2

Probab=88.83  E-value=1.8  Score=36.72  Aligned_cols=74  Identities=20%  Similarity=0.296  Sum_probs=54.7

Q ss_pred             CCCCChhhHHHHHHHHHHHHhCCCCCCCE-EEecCCChHHHHHHHHHHHcCCeEEEEe-------cC--CCCHHHHHHHH
Q psy14801         48 NPTGSLKDRAAWRMIEDAETAGVLKPGYT-IVEPSSGNTGIGLAMVAAIKGYKMVVVM-------PM--KMSKEKVYTMK  117 (404)
Q Consensus        48 ~ptGS~K~R~a~~~l~~a~~~g~~~~~~~-vv~~ssGN~g~a~A~~a~~~G~~~~iv~-------p~--~~~~~k~~~l~  117 (404)
                      +|.--+-+..+...+.+|.+.|.    +. ||..++|.++..++-..  .| +.++|-       |.  ..+++.++.|+
T Consensus        30 ~~G~eNT~~tl~la~era~e~~I----k~iVVASssG~TA~k~~e~~--~~-~lVvVTh~~GF~~pg~~e~~~e~~~~L~  102 (206)
T 1t57_A           30 EPGKENTERVLELVGERADQLGI----RNFVVASVSGETALRLSEMV--EG-NIVSVTHHAGFREKGQLELEDEARDALL  102 (206)
T ss_dssp             SCSGGGHHHHHHHHHHHHHHHTC----CEEEEECSSSHHHHHHHTTC--CS-EEEEECCCTTSSSTTCCSSCHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHcCC----CEEEEEeCCCHHHHHHHHHc--cC-CEEEEeCcCCCCCCCCCcCCHHHHHHHH
Confidence            45555677888888999999885    45 45555899987666533  45 777776       32  57889999999


Q ss_pred             HcCCEEEEeCC
Q psy14801        118 ALGAKIIRTQN  128 (404)
Q Consensus       118 ~~Ga~v~~v~~  128 (404)
                      ..|.+|+....
T Consensus       103 ~~G~~V~t~tH  113 (206)
T 1t57_A          103 ERGVNVYAGSH  113 (206)
T ss_dssp             HHTCEEECCSC
T ss_pred             hCCCEEEEeec
Confidence            99999997654

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=88.33  E-value=2.1  Score=39.76  Aligned_cols=60  Identities=20%  Similarity=0.249  Sum_probs=48.5

Q ss_pred             HHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q psy14801         64 DAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT  126 (404)
Q Consensus        64 ~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v  126 (404)
                      .+.++..+++|++|+..++|..|.+++..|+.+|.+++++.   .++.|++.++.+|++.++-
T Consensus       157 ~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~---~~~~~~~~~~~lGa~~~i~  216 (340)
T 3s2e_A          157 KGLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVD---IDDAKLNLARRLGAEVAVN  216 (340)
T ss_dssp             HHHHTTTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEE---SCHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEe---CCHHHHHHHHHcCCCEEEe
Confidence            44566678889998888889999999999999999776653   3578899999999976654

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=86.98  E-value=3.2  Score=39.51  Aligned_cols=58  Identities=24%  Similarity=0.363  Sum_probs=45.5

Q ss_pred             HHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801         65 AETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKII  124 (404)
Q Consensus        65 a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~  124 (404)
                      +..+..+++|++|+..++|.-|...+..|+.+|.+.++.+  ..++.|++.++.+|++++
T Consensus       177 al~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~--~~~~~~~~~a~~lGa~~i  234 (398)
T 1kol_A          177 GAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVG--DLNPARLAHAKAQGFEIA  234 (398)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEE--ESCHHHHHHHHHTTCEEE
T ss_pred             HHHHcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEE--cCCHHHHHHHHHcCCcEE
Confidence            3445677889998888889999999999999999544443  235788999999999843

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=86.26  E-value=3.1  Score=38.24  Aligned_cols=59  Identities=25%  Similarity=0.268  Sum_probs=47.1

Q ss_pred             HHHHhCCCCCCCEEEecC-CChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q psy14801         64 DAETAGVLKPGYTIVEPS-SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT  126 (404)
Q Consensus        64 ~a~~~g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v  126 (404)
                      .+.++..+++|++|+..+ +|..|.+++..|+.+|.+++++.    +..+++.++.+|++.++-
T Consensus       143 ~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~----~~~~~~~~~~lGa~~~i~  202 (321)
T 3tqh_A          143 QALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA----SKRNHAFLKALGAEQCIN  202 (321)
T ss_dssp             HHHHHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE----CHHHHHHHHHHTCSEEEE
T ss_pred             HHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe----ccchHHHHHHcCCCEEEe
Confidence            345667888999988875 99999999999999999876653    456688899999985543

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=85.93  E-value=3.9  Score=37.91  Aligned_cols=63  Identities=21%  Similarity=0.153  Sum_probs=51.0

Q ss_pred             HHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q psy14801         64 DAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQN  128 (404)
Q Consensus        64 ~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~  128 (404)
                      .+......++|++|+...+|.-|...+..|+.+|.+.++.+.  .++.|++.++.+||+.++-..
T Consensus       151 ~~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~--~~~~k~~~a~~lGa~~~i~~~  213 (346)
T 4a2c_A          151 HAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAID--ISSEKLALAKSFGAMQTFNSS  213 (346)
T ss_dssp             HHHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCSEEEETT
T ss_pred             HHHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEe--chHHHHHHHHHcCCeEEEeCC
Confidence            345566778889998888899999999999999999877763  457889999999998766543

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=85.48  E-value=9.2  Score=36.36  Aligned_cols=56  Identities=23%  Similarity=0.346  Sum_probs=44.2

Q ss_pred             CCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q psy14801         69 GVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT  126 (404)
Q Consensus        69 g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v  126 (404)
                      +.+++|++|+..++|..|.+++..|+.+|.+-++.+  ..++.|++.++.+|++.++-
T Consensus       209 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~--~~~~~~~~~~~~lGa~~vi~  264 (404)
T 3ip1_A          209 GGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILS--EPSEVRRNLAKELGADHVID  264 (404)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEE--CSCHHHHHHHHHHTCSEEEC
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCCEEEc
Confidence            367889998888889999999999999999434433  24578899999999986553

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=85.43  E-value=3.3  Score=39.39  Aligned_cols=57  Identities=21%  Similarity=0.231  Sum_probs=45.4

Q ss_pred             HHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801         65 AETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY-KMVVVMPMKMSKEKVYTMKALGAKII  124 (404)
Q Consensus        65 a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~-~~~iv~p~~~~~~k~~~l~~~Ga~v~  124 (404)
                      +.++..+++|++|+..++|.-|..++..|+.+|. +++++.   .++.|++.++.+|++++
T Consensus       177 al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~---~~~~~~~~a~~lGa~~i  234 (398)
T 2dph_A          177 GCVSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGD---QNPERLKLLSDAGFETI  234 (398)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEE---SCHHHHHHHHTTTCEEE
T ss_pred             HHHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEc---CCHHHHHHHHHcCCcEE
Confidence            3456778889998888889999999999999999 655553   35678889999999743

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=85.37  E-value=2.2  Score=39.73  Aligned_cols=58  Identities=16%  Similarity=0.106  Sum_probs=45.0

Q ss_pred             HHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801         65 AETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR  125 (404)
Q Consensus        65 a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~  125 (404)
                      +..+..+++|++|+..++|..|.+++..|+.+|.+++++..   ++.|++.++.+|++.+.
T Consensus       168 ~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~v~  225 (348)
T 3two_A          168 PLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFAR---NEHKKQDALSMGVKHFY  225 (348)
T ss_dssp             HHHHTTCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECS---SSTTHHHHHHTTCSEEE
T ss_pred             HHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCeec
Confidence            44455678889988778899999999999999998666543   34567788889997665

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=85.06  E-value=3.1  Score=38.77  Aligned_cols=59  Identities=20%  Similarity=0.118  Sum_probs=46.7

Q ss_pred             HHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801         64 DAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY-KMVVVMPMKMSKEKVYTMKALGAKIIR  125 (404)
Q Consensus        64 ~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~-~~~iv~p~~~~~~k~~~l~~~Ga~v~~  125 (404)
                      .+.++..+++|++|+..++|.-|.+.+..|+.+|. +++++   ..++.|++.++.+|++.++
T Consensus       157 ~al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~---~~~~~~~~~~~~lGa~~vi  216 (352)
T 3fpc_A          157 HGAELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAV---GSRKHCCDIALEYGATDII  216 (352)
T ss_dssp             HHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEE---CCCHHHHHHHHHHTCCEEE
T ss_pred             HHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEE---CCCHHHHHHHHHhCCceEE
Confidence            34566778888988777889999999999999999 55554   3457888999999997554

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=84.82  E-value=2.7  Score=39.47  Aligned_cols=57  Identities=26%  Similarity=0.286  Sum_probs=46.7

Q ss_pred             HhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q psy14801         67 TAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT  126 (404)
Q Consensus        67 ~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v  126 (404)
                      +...+++|++|+..++|..|.+++..|+.+|.+++++.   .++.|++.++.+|++.++-
T Consensus       183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~---~~~~~~~~~~~lGa~~vi~  239 (363)
T 3uog_A          183 EKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTS---SSREKLDRAFALGADHGIN  239 (363)
T ss_dssp             TTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEE---SCHHHHHHHHHHTCSEEEE
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEe---cCchhHHHHHHcCCCEEEc
Confidence            56778899998887899999999999999999877664   3567888899999975543

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=84.62  E-value=6.5  Score=36.92  Aligned_cols=60  Identities=18%  Similarity=0.194  Sum_probs=46.4

Q ss_pred             HHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q psy14801         65 AETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT  126 (404)
Q Consensus        65 a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v  126 (404)
                      +.++..+++|++|+..++|..|.+++..|+.+|.+-++.+  ..++.|++.++.+|++.++-
T Consensus       174 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~--~~~~~~~~~a~~lGa~~vi~  233 (370)
T 4ej6_A          174 GVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILS--TRQATKRRLAEEVGATATVD  233 (370)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEE--CSCHHHHHHHHHHTCSEEEC
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCCEEEC
Confidence            3455667888998877889999999999999999544443  34578888999999976543

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=84.50  E-value=1.7  Score=39.96  Aligned_cols=58  Identities=14%  Similarity=0.028  Sum_probs=46.6

Q ss_pred             HHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801         64 DAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR  125 (404)
Q Consensus        64 ~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~  125 (404)
                      .+.++..+++|++|+..+.|..|.+++..|+.+|.+++++.    ++.|++.++.+|++.+.
T Consensus       133 ~al~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~----~~~~~~~~~~lGa~~v~  190 (315)
T 3goh_A          133 QAFEKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS----ASLSQALAAKRGVRHLY  190 (315)
T ss_dssp             HHHTTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC----SSCCHHHHHHHTEEEEE
T ss_pred             HHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE----ChhhHHHHHHcCCCEEE
Confidence            34566788899998888779999999999999999776664    34577788889998665

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=83.65  E-value=5.4  Score=36.68  Aligned_cols=57  Identities=30%  Similarity=0.254  Sum_probs=45.6

Q ss_pred             HhCCCCCCCEEEecC-CChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q psy14801         67 TAGVLKPGYTIVEPS-SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT  126 (404)
Q Consensus        67 ~~g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v  126 (404)
                      +.+.+++|++|+..+ +|..|.+++..++..|.+++++..   ++.|++.++.+|++.+.-
T Consensus       134 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~Ga~~~~~  191 (325)
T 3jyn_A          134 QTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVS---SPEKAAHAKALGAWETID  191 (325)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHHHTCSEEEE
T ss_pred             HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence            446778888887766 899999999999999998776643   567888889999876543

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=83.60  E-value=5.1  Score=37.47  Aligned_cols=59  Identities=19%  Similarity=0.198  Sum_probs=46.1

Q ss_pred             HHHHh--CCCCCCCEEEecCCChHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801         64 DAETA--GVLKPGYTIVEPSSGNTGIGLAMVAAIK-GYKMVVVMPMKMSKEKVYTMKALGAKIIR  125 (404)
Q Consensus        64 ~a~~~--g~~~~~~~vv~~ssGN~g~a~A~~a~~~-G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~  125 (404)
                      .+..+  ..+++|++|+..+.|..|..++..|+.+ |.+++++.   .++.|++.++.+|++.++
T Consensus       175 ~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~---~~~~~~~~~~~lGa~~vi  236 (359)
T 1h2b_A          175 RAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALD---VKEEKLKLAERLGADHVV  236 (359)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEE---SSHHHHHHHHHTTCSEEE
T ss_pred             HHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEe---CCHHHHHHHHHhCCCEEE
Confidence            34444  6778889988888899999999999999 99855553   256788899999997554

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=83.36  E-value=6.3  Score=36.31  Aligned_cols=58  Identities=24%  Similarity=0.317  Sum_probs=46.1

Q ss_pred             HhCCCCCCCEEEecC-CChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q psy14801         67 TAGVLKPGYTIVEPS-SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQ  127 (404)
Q Consensus        67 ~~g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~  127 (404)
                      +.+.+++|++|+..+ +|.-|.+++..++..|.+++++..   ++.|++.++.+|++.+...
T Consensus       142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~ga~~~~~~  200 (334)
T 3qwb_A          142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVAS---TDEKLKIAKEYGAEYLINA  200 (334)
T ss_dssp             TTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEET
T ss_pred             HhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCcEEEeC
Confidence            345778888887776 899999999999999998776643   5678888999999766543

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=82.43  E-value=7  Score=36.43  Aligned_cols=59  Identities=22%  Similarity=0.344  Sum_probs=46.4

Q ss_pred             HhCCCCCCCEEEecCC-ChHHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEE
Q psy14801         67 TAGVLKPGYTIVEPSS-GNTGIGLAMVAAIKGYKMVVVMPMKM-SKEKVYTMKALGAKIIR  125 (404)
Q Consensus        67 ~~g~~~~~~~vv~~ss-GN~g~a~A~~a~~~G~~~~iv~p~~~-~~~k~~~l~~~Ga~v~~  125 (404)
                      +.+.+++|++|+..+. |..|..++..|+.+|.+.++++.... ...+++.++.+|++.++
T Consensus       161 ~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi  221 (357)
T 1zsy_A          161 DFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVI  221 (357)
T ss_dssp             HSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEE
T ss_pred             HHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEE
Confidence            4467788898877774 99999999999999999888875543 34567888899997554

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=82.34  E-value=4.1  Score=39.63  Aligned_cols=56  Identities=23%  Similarity=0.255  Sum_probs=46.6

Q ss_pred             CCCCCCCEEEecCC-ChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q psy14801         69 GVLKPGYTIVEPSS-GNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQ  127 (404)
Q Consensus        69 g~~~~~~~vv~~ss-GN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~  127 (404)
                      ..+++|++|+..+. |..|.+.+.+|+.+|.+.+++.   .++.|++.++.+|++.++-.
T Consensus       224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~---~~~~~~~~~~~lGa~~vi~~  280 (456)
T 3krt_A          224 AGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVV---SSPQKAEICRAMGAEAIIDR  280 (456)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE---SSHHHHHHHHHHTCCEEEET
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEE---CCHHHHHHHHhhCCcEEEec
Confidence            56788898877775 9999999999999999988876   36789999999999866544

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=81.68  E-value=7.3  Score=36.56  Aligned_cols=51  Identities=14%  Similarity=0.086  Sum_probs=40.3

Q ss_pred             CCCCEEEecCC-ChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q psy14801         72 KPGYTIVEPSS-GNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT  126 (404)
Q Consensus        72 ~~~~~vv~~ss-GN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v  126 (404)
                      ++|++|+..+. |..|.+++..|+.+|.+++++.    ++.|++.++.+|++.++-
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~----~~~~~~~~~~lGa~~vi~  214 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC----SPHNFDLAKSRGAEEVFD  214 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE----CGGGHHHHHHTTCSEEEE
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe----CHHHHHHHHHcCCcEEEE
Confidence            67777766555 8999999999999999876653    457888999999975543

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=81.50  E-value=5  Score=37.24  Aligned_cols=53  Identities=17%  Similarity=0.265  Sum_probs=44.5

Q ss_pred             HhCCCCCCCEEEecC-CChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q psy14801         67 TAGVLKPGYTIVEPS-SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKI  123 (404)
Q Consensus        67 ~~g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v  123 (404)
                      ++..+++|++|+..+ +|.-|.+++..|+..|.+++++    .+..+++.++.+|++.
T Consensus       144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~----~~~~~~~~~~~lGa~~  197 (343)
T 3gaz_A          144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT----ARGSDLEYVRDLGATP  197 (343)
T ss_dssp             TTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE----ECHHHHHHHHHHTSEE
T ss_pred             HhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE----eCHHHHHHHHHcCCCE
Confidence            567788889887776 8999999999999999986665    3567888999999997

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=81.22  E-value=5.1  Score=37.41  Aligned_cols=57  Identities=25%  Similarity=0.358  Sum_probs=44.3

Q ss_pred             HHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEEE
Q psy14801         65 AETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY-KMVVVMPMKMSKEKVYTMKALGAKII  124 (404)
Q Consensus        65 a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~-~~~iv~p~~~~~~k~~~l~~~Ga~v~  124 (404)
                      +.++..+++|++|+..++|..|..++..|+.+|. +++++.   .++.|++.++.+|++.+
T Consensus       163 al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~---~~~~~~~~a~~lGa~~v  220 (356)
T 1pl8_A          163 ACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTD---LSATRLSKAKEIGADLV  220 (356)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEE---SCHHHHHHHHHTTCSEE
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEC---CCHHHHHHHHHhCCCEE
Confidence            3455567888888877889999999999999999 555543   35778888999999644

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=81.20  E-value=7.7  Score=35.60  Aligned_cols=62  Identities=23%  Similarity=0.132  Sum_probs=44.5

Q ss_pred             HHhCCCCCCCEEEecCCC-hHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHH----HcCCEEEEeC
Q psy14801         66 ETAGVLKPGYTIVEPSSG-NTGIGLAMVAAIKGYKMVVVMPMKM--SKEKVYTMK----ALGAKIIRTQ  127 (404)
Q Consensus        66 ~~~g~~~~~~~vv~~ssG-N~g~a~A~~a~~~G~~~~iv~p~~~--~~~k~~~l~----~~Ga~v~~v~  127 (404)
                      +..|.+++|.+|+..+.+ |.+.|++.+++++|++++++-|++-  ++.-++.++    ..|+.+..+.
T Consensus       138 e~~g~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~  206 (307)
T 3tpf_A          138 EWNKMQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGY  206 (307)
T ss_dssp             HTTCCGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEES
T ss_pred             HHhCCCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence            345665546777766655 8899999999999999999999853  333333333    6788887764

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=80.88  E-value=4.4  Score=38.11  Aligned_cols=56  Identities=21%  Similarity=0.224  Sum_probs=43.1

Q ss_pred             HhCCCCCCCEEEecCCChHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801         67 TAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY-KMVVVMPMKMSKEKVYTMKALGAKIIR  125 (404)
Q Consensus        67 ~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~-~~~iv~p~~~~~~k~~~l~~~Ga~v~~  125 (404)
                      +...+++|++|+..++|.-|..++..|+.+|. +++++.   .++.|++.++.+|++.++
T Consensus       185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~---~~~~~~~~a~~lGa~~vi  241 (373)
T 1p0f_A          185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVG---THKDKFPKAIELGATECL  241 (373)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEC---SCGGGHHHHHHTTCSEEE
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEC---CCHHHHHHHHHcCCcEEE
Confidence            45677888998888889999999999999998 454442   245677788899996543

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=80.87  E-value=7.2  Score=36.48  Aligned_cols=56  Identities=21%  Similarity=0.221  Sum_probs=44.8

Q ss_pred             HhCCCCCCCEEEecC-CChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801         67 TAGVLKPGYTIVEPS-SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR  125 (404)
Q Consensus        67 ~~g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~  125 (404)
                      +.+.+++|++|+..+ +|..|.+++..++..|.+++++..   ++.+++.++.+|++.+.
T Consensus       157 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~---~~~~~~~~~~~Ga~~~~  213 (362)
T 2c0c_A          157 ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCS---SDEKSAFLKSLGCDRPI  213 (362)
T ss_dssp             HHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEE
T ss_pred             HhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEEC---CHHHHHHHHHcCCcEEE
Confidence            456778888887777 899999999999999998666543   46788888889997654

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=80.83  E-value=5.1  Score=37.32  Aligned_cols=58  Identities=21%  Similarity=0.209  Sum_probs=44.4

Q ss_pred             HHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801         65 AETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR  125 (404)
Q Consensus        65 a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~  125 (404)
                      +.++..+++|++|+..++|..|..++..|+.+|.+++++ .  .++.|++.++.+|++.+.
T Consensus       160 al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~-~--~~~~~~~~~~~lGa~~~~  217 (352)
T 1e3j_A          160 ACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCT-A--RSPRRLEVAKNCGADVTL  217 (352)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEE-E--SCHHHHHHHHHTTCSEEE
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEE-c--CCHHHHHHHHHhCCCEEE
Confidence            344556778888877778999999999999999994433 2  357888889999997443

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=80.13  E-value=8.1  Score=36.01  Aligned_cols=57  Identities=19%  Similarity=0.296  Sum_probs=43.3

Q ss_pred             CCCCCC-CEEEecC-CChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEE
Q psy14801         69 GVLKPG-YTIVEPS-SGNTGIGLAMVAAIKGYKMVVVMPMKMS-KEKVYTMKALGAKIIR  125 (404)
Q Consensus        69 g~~~~~-~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~k~~~l~~~Ga~v~~  125 (404)
                      +.+++| ++|+..+ +|..|..++..|+.+|.+.+++...... ..+++.++.+|++.++
T Consensus       162 ~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi  221 (364)
T 1gu7_A          162 VKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVI  221 (364)
T ss_dssp             SCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEE
T ss_pred             hccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeEEE
Confidence            567888 8887766 5999999999999999998877754433 3445667889997543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	404
d1jbqa_	355	c.79.1.1 (A:) Cystathionine beta-synthase {Human (	2e-79
d1z7wa1	320	c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (C	2e-64
d1z7wa1	320	c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (C	9e-06
d1o58a_	293	c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei	3e-61
d1o58a_	293	c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei	9e-05
d1y7la1	310	c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (C	2e-58
d1ve1a1	302	c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (C	2e-58
d1ve1a1	302	c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (C	0.002
d1fcja_	302	c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei	3e-57
d2bhsa1	292	c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (C	2e-50
d1wkva1	382	c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (C	1e-47
d1v71a1	318	c.79.1.1 (A:6-323) Hypothetical protein C320.14 (S	5e-34
d1tdja1	331	c.79.1.1 (A:5-335) Threonine deaminase {Escherichi	4e-33
d1tyza_	338	c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de	1e-30
d1v8za1	386	c.79.1.1 (A:1-386) Tryptophan synthase, beta-subun	4e-26
d1e5xa_	477	c.79.1.1 (A:) Threonine synthase {Mouse-ear cress	1e-25
d1ve5a1	310	c.79.1.1 (A:2-311) Threonine deaminase {Thermus th	4e-25
d1f2da_	341	c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de	5e-25
d1v7ca_	351	c.79.1.1 (A:) Threonine synthase {Thermus thermoph	7e-25
d1j0aa_	325	c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de	4e-24
d1p5ja_	319	c.79.1.1 (A:) L-serine dehydratase {Human (Homo sa	3e-19
d1qopb_	390	c.79.1.1 (B:) Tryptophan synthase, beta-subunit {S	5e-18

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  246 bits (629), Expect = 2e-79
 Identities = 171/316 (54%), Positives = 228/316 (72%), Gaps = 5/316 (1%)

Query: 22  GKVPLLPQSKQGSILLPTTD--AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVE 79
           G  P++  +K G       +  AKCEF N  GS+KDR + RMIEDAE  G LKPG TI+E
Sbjct: 43  GDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIE 102

Query: 80  PSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMI 139
           P+SGNTGIGLA+ AA++GY+ ++VMP KMS EKV  ++ALGA+I+RT  +  +D PE  +
Sbjct: 103 PTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHV 162

Query: 140 AGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGI 199
             A R+ +++ N+ +LDQ+RN +NPL+HY+TTA+EIL+   GK+DM+V   GTGGT +GI
Sbjct: 163 GVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGI 222

Query: 200 GRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVID 259
            RK+KEKCP C+++G DP GSILA+P+ LN   +      EVEGIGY F  T LDR V+D
Sbjct: 223 ARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTY---EVEGIGYDFIPTVLDRTVVD 279

Query: 260 QWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNY 319
           +W K  D++ F  AR LI  EGLL GGS+G+ + VA +AA+ L+  QRCVVIL D VRNY
Sbjct: 280 KWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQEGQRCVVILPDSVRNY 339

Query: 320 LTKFISDEWMIEKGFL 335
           +TKF+SD WM++KGFL
Sbjct: 340 MTKFLSDRWMLQKGFL 355

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 320

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  207 bits (526), Expect = 2e-64
 Identities = 112/317 (35%), Positives = 164/317 (51%), Gaps = 13/317 (4%)

Query: 22  GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPG-YTIVEP 80
           G  PL+  +      +    AK E M P  S+KDR  + MI DAE  G++KPG   ++EP
Sbjct: 12  GNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEP 71

Query: 81  SSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIA 140
           +SGNTG+GLA  AA KGYK+++ MP  MS E+   + A G +++ T   K          
Sbjct: 72  TSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKA- 130

Query: 141 GAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIG 200
               I ++  N  +L QF NP NP  HYETT  EI + TGGK+D  V G GTGGT +G G
Sbjct: 131 --EEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAG 188

Query: 201 RKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQ 260
           + +KE+  + KL G +P  S +        +   +   ++++GIG  F  + L+ ++ID+
Sbjct: 189 KYLKEQNANVKLYGVEPVESAI--------LSGGKPGPHKIQGIGAGFIPSVLNVDLIDE 240

Query: 261 WGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQ-AAKSLRPDQRCVVILADGVRNY 319
             +    ++  MAR+L   EGLLVG SSG A   A + A +     +  V I       Y
Sbjct: 241 VVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERY 300

Query: 320 LTKFISDEWMIEKGFLD 336
           L+  + D    E   + 
Sbjct: 301 LSTVLFDATRKEAEAMT 317

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 320

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 44.9 bits (105), Expect = 9e-06
 Identities = 21/116 (18%), Positives = 38/116 (32%), Gaps = 9/116 (7%)

Query: 289 GTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGF--LDEAEEL--EEM 344
           G     +   +       +   I A  + + L   + DE +       +D A +L  +E 
Sbjct: 202 GVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEG 261

Query: 345 IH----SGTAMHVACQ-AAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFLD 395
           +     SG A   A + A +     +  V I       YL+  + D    E   + 
Sbjct: 262 LLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERYLSTVLFDATRKEAEAMT 317

>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Length = 293

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

 Score =  197 bits (502), Expect = 3e-61
 Identities = 114/302 (37%), Positives = 161/302 (53%), Gaps = 19/302 (6%)

Query: 22  GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
           G  P++      S +      K E  NP GS+KDR A  MI DAE  G+LK G  IVEP+
Sbjct: 9   GSTPIVRLDSIDSRIF----LKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG--IVEPT 62

Query: 82  SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAG 141
           SGN GI +AM+ A +G+++++ MP  MS E+   +K LGA+++ T  +         +  
Sbjct: 63  SGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKG---AVEK 119

Query: 142 AHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGR 201
           A  I+ +   A +L+QF NP N  SH  TT  EIL+    ++D  V G GTGGT SG+GR
Sbjct: 120 ALEISRE-TGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGR 178

Query: 202 KIKEKCP-SCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQ 260
            +K       K+V  +P  S +        +   Q   + ++GIG  F    LDR+VID+
Sbjct: 179 VLKGFFGNGVKIVAVEPAKSPV--------LSGGQPGKHAIQGIGAGFVPKILDRSVIDE 230

Query: 261 WGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYL 320
                D++ + MAR L K EGLLVG SSG  +  A + A+ L PD R V +  D    YL
Sbjct: 231 VITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLGPDARVVTVAPDHAERYL 290

Query: 321 TK 322
           + 
Sbjct: 291 SI 292

>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Length = 293

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.6 bits (97), Expect = 9e-05
 Identities = 28/156 (17%), Positives = 49/156 (31%), Gaps = 33/156 (21%)

Query: 256 NVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADG 315
           NV       G +    M  ++   +  + G  +G  +    +  K    +   +V +   
Sbjct: 140 NVYSHQFTTGPEILKQMDYQI---DAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPA 196

Query: 316 VRNYLTKFISDEWMIE------------KGFLDEA-----EELEEMIH------------ 346
               L+     +  I+            +  +DE      EE  EM              
Sbjct: 197 KSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGI 256

Query: 347 -SGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK 381
            SG  +  A + A+ L PD R V +  D    YL+ 
Sbjct: 257 SSGANVAAALKVAQKLGPDARVVTVAPDHAERYLSI 292

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Length = 310

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

 Score =  191 bits (485), Expect = 2e-58
 Identities = 107/308 (34%), Positives = 152/308 (49%), Gaps = 14/308 (4%)

Query: 22  GKVPLLP---QSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIV 78
           G  PL+        G++++     K E  NP+ S+K R    M+  AE  G L  G  IV
Sbjct: 11  GNTPLVRLKHFGHNGNVVV-----KIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGKEIV 65

Query: 79  EPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM 138
           + +SGNTGI LA VAA +GYK+ + MP  MS E+   +  LG  ++    + +      +
Sbjct: 66  DATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLV--LTEGAKGMKGAI 123

Query: 139 IAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASG 198
                 +AS     V+L QF NP NP  H ETT  EI +DT GKVD++V G GTGG+ +G
Sbjct: 124 AKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSITG 183

Query: 199 IGRKIKE-KCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNV 257
           I R IK         V  +P  S +       +  E +   ++++GIG  F    LD ++
Sbjct: 184 ISRAIKLDFGKQITSVAVEPVESPVISQTLAGE--EVKPGPHKIQGIGAGFIPKNLDLSI 241

Query: 258 IDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLR-PDQRCVVILADGV 316
           ID+            ARRL+  EG+L G SSG A+  A + AK     D+  VVIL    
Sbjct: 242 IDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLPEFADKLIVVILPSAS 301

Query: 317 RNYLTKFI 324
             YL+  +
Sbjct: 302 ERYLSTAL 309

>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Length = 302

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermus thermophilus [TaxId: 274]

 Score =  190 bits (484), Expect = 2e-58
 Identities = 113/301 (37%), Positives = 170/301 (56%), Gaps = 14/301 (4%)

Query: 22  GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGY--TIVE 79
           GK P++  +K     +     K E +NP GS+KDR AW MI+DAE  G+L+PG    IVE
Sbjct: 8   GKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIVE 67

Query: 80  PSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMI 139
           P+SGNTGIGLAM+AA +GY++++ MP +MS+E+   +KA GA+++ T  ++         
Sbjct: 68  PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREE- 126

Query: 140 AGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGI 199
                   +   A + DQF+NP N  +HYETT  E+     G++D  V G GTGGT +G+
Sbjct: 127 ---ALRLKEELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITGV 183

Query: 200 GRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVID 259
           GR +KE+ P  K++          +P   N +   ++  +  +G+G  F    LD +++D
Sbjct: 184 GRYLKERIPHVKVIAV--------EPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLD 235

Query: 260 QWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNY 319
              +  ++D F +ARRL + EGL +G SSG  +  A Q A+ L P +R   I  DG   Y
Sbjct: 236 GVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVARELGPGKRVACISPDGGWKY 295

Query: 320 L 320
           L
Sbjct: 296 L 296

>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Length = 302

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermus thermophilus [TaxId: 274]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 347 SGTAMHVACQAAKSLRPDQRCVVILADGVRNYL 379
           SG  +  A Q A+ L P +R   I  DG   YL
Sbjct: 264 SGGIVWAALQVARELGPGKRVACISPDGGWKYL 296

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Length = 302

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

 Score =  187 bits (476), Expect = 3e-57
 Identities = 107/296 (36%), Positives = 154/296 (52%), Gaps = 10/296 (3%)

Query: 22  GKVPLLPQSK--QGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVE 79
           G  PL+  ++   G IL      K E  NP+ S+K R    MI DAE  GVLKPG  +VE
Sbjct: 12  GHTPLVRLNRIGNGRILA-----KVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVELVE 66

Query: 80  PSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMI 139
           P++GNTGI LA VAA +GYK+ + MP  MS E+   +KALGA ++ T+          + 
Sbjct: 67  PTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGA--KGMKGAIQ 124

Query: 140 AGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGI 199
                +AS  +  ++L QF NP NP  H +TT  EI  DT G+VD+ + G GTGGT +G+
Sbjct: 125 KAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGTLTGV 184

Query: 200 GRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVID 259
            R IK       L+      +            E +   ++++GIG  F    LD  +ID
Sbjct: 185 TRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPGNLDLKLID 244

Query: 260 QWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLR-PDQRCVVILAD 314
           +     +++    ARRL++ EG+L G SSG A+  A +  +     ++  VVIL  
Sbjct: 245 KVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPS 300

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Length = 292

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

 Score =  169 bits (428), Expect = 2e-50
 Identities = 99/299 (33%), Positives = 144/299 (48%), Gaps = 20/299 (6%)

Query: 22  GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
           G  PL+   + G         K E  NP GS+KDRAA  MI +AE  G +KPG  ++E +
Sbjct: 8   GNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDVLIEAT 67

Query: 82  SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAG 141
           SGNTGI LAM+AA+KGY+M ++MP  MS+E+   M+A GA++I    ++  +    +   
Sbjct: 68  SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALE 127

Query: 142 AHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGR 201
                         DQF NP+NP +HY TT  EI + TGG++   V   GT GT +G+ R
Sbjct: 128 MANRGEGKLL----DQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSR 183

Query: 202 KIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQW 261
            ++E+     +VG                 PE   S   +      +     + +++D+ 
Sbjct: 184 FMREQSKPVTIVGLQ---------------PEEGSSIPGIRRWPTEYLPGIFNASLVDEV 228

Query: 262 GKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYL 320
                +D     R L   EG+  G SSG A+  A + AK   PD   V I+ D    YL
Sbjct: 229 LDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAK-ANPDAVVVAIICDRGDRYL 286

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 382

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score =  164 bits (416), Expect = 1e-47
 Identities = 52/284 (18%), Positives = 99/284 (34%), Gaps = 21/284 (7%)

Query: 42  AKCEFMNPTG-SLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKM 100
            K E+ NP   S+KDR A  +I        ++ G  + + +S N G+ L+ VA + GY+ 
Sbjct: 113 LKLEWYNPFSLSVKDRPAVEIISRLS--RRVEKGSLVADATSSNFGVALSAVARLYGYRA 170

Query: 101 VVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRN 160
            V +P    +      + LGA++I      S  H    +    +    +      +    
Sbjct: 171 RVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVHLLPRVMKDSKNEGFVHVNQFYNDANF 230

Query: 161 PNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS 220
             +          +  R  G  +  +    GT G  S     ++   PS + V       
Sbjct: 231 EAHMRGTAREIFVQ-SRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQ---- 285

Query: 221 ILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSE 280
                      P    S   +  +        +  ++     +   ++       + +S+
Sbjct: 286 -----------PAQGDSIPGIRRVETGMLWINML-DISYTLAEVTLEEAMEAVVEVARSD 333

Query: 281 GLLVGGSSGTAMHVACQ-AAKSLRPDQRCVVILADGVRNYLTKF 323
           GL++G S G A+    + AA+        VV++ D    YL+  
Sbjct: 334 GLVIGPSGGAAVKALAKKAAEGDLEPGDYVVVVPDTGFKYLSLV 377

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 318

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score =  126 bits (318), Expect = 5e-34
 Identities = 56/300 (18%), Positives = 109/300 (36%), Gaps = 20/300 (6%)

Query: 22  GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
            K P+L  S      +     KCE     G+ K R A   +     A   +    ++  S
Sbjct: 20  NKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEA---QRKAGVLTFS 76

Query: 82  SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAG 141
           SGN    +A+ A I G    ++MP+   + KV   K  G ++I     K           
Sbjct: 77  SGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRYKDDREKM----- 131

Query: 142 AHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGR 201
           A  I+ + +   ++  + +P+          E  L +  G +D + +  G GG  SG   
Sbjct: 132 AKEISER-EGLTIIPPYDHPHVLAGQGTAAKE--LFEEVGPLDALFVCLGGGGLLSGSAL 188

Query: 202 KIKEKCPSCKLVGADP------FGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDR 255
             +   P+C++ G +P        S         D P+      + + +G      ++ +
Sbjct: 189 AARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLG--NYTFSIIK 246

Query: 256 NVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADG 315
             +D      D++     +       ++V  +   +   A    + L  ++R  +I++ G
Sbjct: 247 EKVDDILTVSDEELIDCLKFYAARMKIVVEPTGCLSFAAARAMKEKL-KNKRIGIIISGG 305

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Length = 331

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

 Score =  124 bits (312), Expect = 4e-33
 Identities = 50/279 (17%), Positives = 92/279 (32%), Gaps = 16/279 (5%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
            K E   P  S K R A+ M+            + ++  S+GN   G+A  +A  G K +
Sbjct: 46  VKREDRQPVHSFKLRGAYAMMAGLTEEQ---KAHGVITASAGNHAQGVAFSSARLGVKAL 102

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
           +VMP   +  KV  ++  G +++       +              SQ +    +  F +P
Sbjct: 103 IVMPTATADIKVDAVRGFGGEVLL------HGANFDEAKAKAIELSQQQGFTWVPPFDHP 156

Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADP-FGS 220
                  + T    L      +D + +  G GG A+G+   IK+  P  K++  +    +
Sbjct: 157 MVI--AGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSA 214

Query: 221 ILAQPQSLNDVPENQISYNEVEGIGYSFA---ATTLDRNVIDQWGKCGDKDTFLMARRLI 277
            L          +        EG+           L +  +D              + L 
Sbjct: 215 CLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLF 274

Query: 278 KSEGLLVGGSSGTAMHVACQ-AAKSLRPDQRCVVILADG 315
           +    +   S   A+    +  A      +R   IL+  
Sbjct: 275 EDVRAVAEPSGALALAGMKKYIALHNIRGERLAHILSGA 313

>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Length = 338

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Pseudomonas sp., strain ACP [TaxId: 306]

 Score =  118 bits (295), Expect = 1e-30
 Identities = 49/293 (16%), Positives = 86/293 (29%), Gaps = 21/293 (7%)

Query: 42  AKCEFMNPTGSL---KDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
           AK E  N   +    K R    +I +A   G        +     N    +A VAA  G 
Sbjct: 36  AKREDCNSGLAFGGNKTRKLEYLIPEALAQG--CDTLVSIGGIQSNQTRQVAAVAAHLGM 93

Query: 99  KMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEG-------MIAGAHRIASQMKN 151
           K V+V    ++       +    ++ R         P+G           A         
Sbjct: 94  KCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDGFDIGFRRSWEDALESVRAAGG 153

Query: 152 AVVLDQFRNPNNPLSHYETTAEEI-----LRDTGGKVDMIVLGCGTGGTASGIGRKIKEK 206
                     ++PL                 + G K D +V+   TG T +G+       
Sbjct: 154 KPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAAD 213

Query: 207 CPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGD 266
             + +++G D         + +  +         +E      A   LD           +
Sbjct: 214 GRADRVIGVDASAKPAQTREQITRIARQTAEKVGLER-DIMRADVVLDERFAGPEYGLPN 272

Query: 267 KDTFLMARRLIKSEGLLVG-GSSGTAMHVACQAAKS--LRPDQRCVVILADGV 316
           + T    R   ++EG+L      G +MH   +  ++       R +     GV
Sbjct: 273 EGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLYAHLGGV 325

>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 386

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score =  106 bits (264), Expect = 4e-26
 Identities = 56/306 (18%), Positives = 103/306 (33%), Gaps = 40/306 (13%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
            K E +   G+ K   A      A+  G  +    I E  +G  G+  AM  A+ G K+ 
Sbjct: 70  LKREDLVHGGAHKTNNAIGQALLAKFMGKTR---LIAETGAGQHGVATAMAGALLGMKVD 126

Query: 102 VVMP---MKMSKEKVYTMKALGAKIIR----TQNDKSYDHPEGMIAGAHRIASQMKNAVV 154
           + M    ++  K  V+ MK LGA +I     ++  K   +       A    +      V
Sbjct: 127 IYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSV 186

Query: 155 LDQFRNPNNPLSHYETTAEEI---LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCK 211
           +     P            E    + +  G++  +++ C  GG+ +             K
Sbjct: 187 VGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVK 246

Query: 212 LVGADPFGSILAQPQSLNDV-------------------------PENQISYNEVEGIGY 246
           LVG +  G  L   +    +                           +     +  G+G 
Sbjct: 247 LVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGP 306

Query: 247 SFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQ 306
             A   L +    ++    D++       L ++EG++    S  A+  A + AK +  D+
Sbjct: 307 EHAY--LKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDE 364

Query: 307 RCVVIL 312
             +V L
Sbjct: 365 IIIVNL 370

>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 477

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  106 bits (264), Expect = 1e-25
 Identities = 48/346 (13%), Positives = 95/346 (27%), Gaps = 34/346 (9%)

Query: 22  GKVPLLPQSKQGSILLPTTD--AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGY-TIV 78
           G   L    + G   L   D   K   ++ TGS KD     ++        +K     + 
Sbjct: 120 GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVG 179

Query: 79  EPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGM 138
             S+G+T   L+   A  G   +V +P          +    A      +  +       
Sbjct: 180 CASTGDTSAALSAYCASAGIPSIVFLPANKISMA--QLVQPIANGAFVLSIDTDFDGCMK 237

Query: 139 IAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASG 198
           +          +  + L    N            E + +      D +++  G  G    
Sbjct: 238 LIREI----TAELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYA 293

Query: 199 IGRKIKEKC--------PSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAA 250
             +  K           P      A     +    +S     +   +             
Sbjct: 294 FYKGFKMCQELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQIGDP 353

Query: 251 TTLDRNVIDQWGKCG-----DKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--LR 303
            ++DR V       G      ++  + A     S G+ +   +G A+    +      + 
Sbjct: 354 VSIDRAVYALKKCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALFKLRNQGVIA 413

Query: 304 PDQRCVVIL-------ADGVRNYLTKFISDEWMIEKGFLDEAEELE 342
           P  R VV+             +Y +  I D   +   F +   +++
Sbjct: 414 PTDRTVVVSTAHGLKFTQSKIDYHSNAIPD---MACRFSNPPVDVK 456

>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Length = 310

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Thermus thermophilus [TaxId: 274]

 Score =  102 bits (254), Expect = 4e-25
 Identities = 52/300 (17%), Positives = 91/300 (30%), Gaps = 25/300 (8%)

Query: 22  GKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPS 81
            + PLL       +L      K E +  TGS K R A       E          ++  S
Sbjct: 18  HRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALE------NPKGLLAVS 71

Query: 82  SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAG 141
           SGN   G+A  A + G K +VVMP   S  K         +    +        +     
Sbjct: 72  SGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACA-----RAYGAEVVDRGVTAKNREEV 126

Query: 142 AHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI--LRDTGGKVDMIVLGCGTGGTASGI 199
           A  +  +     ++  F +P           E +      G     ++   G GG  +G+
Sbjct: 127 ARALQEE-TGYALIHPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGGGGLLAGL 185

Query: 200 GRKIKEKCPSCKLVGADPF-------GSILAQPQSLNDVPENQISYNEVEGIGYSFAATT 252
              +K   P+  ++G +P             +   L   P  +        +G       
Sbjct: 186 ATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTLSLGERTFP-- 243

Query: 253 LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVIL 312
           + R  +D      ++      R L      +V  +    +    +     R  Q   ++L
Sbjct: 244 ILRERVDGILTVSEEALLEAERLLFTRTKQVVEPTGALPLAAVLEHGA--RLPQTLALLL 301

>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Length = 341

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Yeast (Hansenula saturnus) [TaxId: 4906]

 Score =  102 bits (254), Expect = 5e-25
 Identities = 46/296 (15%), Positives = 82/296 (27%), Gaps = 26/296 (8%)

Query: 42  AKCEFMNPTGSL---KDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGY 98
           AK E  N   +    K R    ++ D             +     N    +A +AA  G 
Sbjct: 36  AKREDCNSGLAFGGNKLRKLEYIVPDIVEGD--YTHLVSIGGRQSNQTRMVAALAAKLGK 93

Query: 99  KMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDH------------PEGMIAGAHRIA 146
           K V++    +   +           I        D                  A      
Sbjct: 94  KCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELED 153

Query: 147 SQMKNAVVLDQFRNPNNPLSHYETTAE---EILRDTGGKVDMIVLGCGTGGTASGIGRKI 203
           +  K   +             +   A+       + G K D IV+ C TG T +GI   +
Sbjct: 154 AGHKPYPIPAGCSEHKYGGLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGM 213

Query: 204 KEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNVIDQWGK 263
            +      ++  D   +     +          +  ++ G+ + F   TLD         
Sbjct: 214 AQYGRQDDVIAIDASFTSEKTKE---QTLRIANNTAKLIGVEHEFKDFTLDTRFAYPCYG 270

Query: 264 CGDKDTFLMARRLIKSEGLLVG-GSSGTAMHVACQAAKS--LRPDQRCVVILADGV 316
             ++ T    R   + EG+L      G +M       K    +P    + +   G 
Sbjct: 271 VPNEGTIEAIRTCAEQEGVLTDPVYEGKSMQGLIALIKEDYFKPGANVLYVHLGGA 326

>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Length = 351

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Thermus thermophilus [TaxId: 274]

 Score =  102 bits (253), Expect = 7e-25
 Identities = 56/307 (18%), Positives = 89/307 (28%), Gaps = 24/307 (7%)

Query: 17  TPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYT 76
           TP +P K P   + K   +       K E +NPTGS KDR     +  A   G       
Sbjct: 29  TPLIPLKGPEEARKKGIRLYA-----KYEGLNPTGSFKDRGMTLAVSKAVEGG----AQA 79

Query: 77  IVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPE 136
           +   S+GNT    A  AA  G   +VV+P                        +      
Sbjct: 80  VACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQ-------SLVHGARIVQVEG 132

Query: 137 GMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTA 196
                        +   V        + L   +T A E++ + G       L  G  G  
Sbjct: 133 NFDDALRLTQKLTEAFPVALVNSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGNAGNI 192

Query: 197 SGIGRKIKEKC------PSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAA 250
           +      K            +++G    G+         + PE   +   +        A
Sbjct: 193 TAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVERPETLATAIRIGNPASWQGA 252

Query: 251 TTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--LRPDQRC 308
                          D++     R L + EG+    +S  AM    +  +   L P+   
Sbjct: 253 VRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFKLLREGRLEPESTV 312

Query: 309 VVILADG 315
           V+ L   
Sbjct: 313 VLTLTGH 319

>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 325

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 99.4 bits (246), Expect = 4e-24
 Identities = 45/304 (14%), Positives = 95/304 (31%), Gaps = 18/304 (5%)

Query: 17  TPTVPGKVPLLPQSKQGSILLPTTDAKCEFMN--PTGSLKDRAAWRMIEDAETAGVLKPG 74
           TP     +P + +     + +     K + +     G  K R    ++ DA + G     
Sbjct: 22  TPIQ--YLPNISREIGADVYI-----KRDDLTGLGIGGNKIRKLEYLLGDALSKGADVVI 74

Query: 75  YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQN-DKSYD 133
              V     N      + A   G   ++V+  K   +  Y +  +     R  +   S++
Sbjct: 75  --TVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFE 132

Query: 134 HPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTG 193
             +     A  +  + +   V+            Y     EI   +  K D IV+  G+G
Sbjct: 133 LMKYAEEIAEELKREGRKPYVIPPGGASPIGTLGYVRAVGEIATQSEVKFDSIVVAAGSG 192

Query: 194 GTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTL 253
           GT +G+   +       + VG                +        E+ G+         
Sbjct: 193 GTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTS---KLDNLIKEAAELLGVKVEVRP--E 247

Query: 254 DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGG-SSGTAMHVACQAAKSLRPDQRCVVIL 312
             +           +   + R++   EG+++    +G A +     A+     ++ + I 
Sbjct: 248 LYDYSFGEYGKITGEVAQIIRKVGTREGIILDPVYTGKAFYGLVDLARKGELGEKILFIH 307

Query: 313 ADGV 316
             G+
Sbjct: 308 TGGI 311

>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 319

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: L-serine dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.6 bits (210), Expect = 3e-19
 Identities = 39/286 (13%), Positives = 73/286 (25%), Gaps = 21/286 (7%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
            K +   P+GS K R      +     G        V  S+GN G+  A        + +
Sbjct: 26  LKMDSAQPSGSFKIRGIGHFCKRWAKQGCA----HFVCSSAGNAGMAAAYA-----ARQL 76

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNP 161
            V    +       +     K          +  +     A  +A      V +  F +P
Sbjct: 77  GVPATIVVPGTTPALTIERLKNEGATCKVVGELLDEAFELAKALAKNNPGWVYIPPFDDP 136

Query: 162 NNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI 221
                H     E           + +   G G     +    +       ++  + FG+ 
Sbjct: 137 LIWEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAH 196

Query: 222 LAQPQSLNDVPEN----QISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLI 277
                +      +          +        A  L +          D++      + +
Sbjct: 197 SFHAATTAGKLVSLPKITSVAKALGVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKFV 256

Query: 278 KSEGLLVGGSSGTAMHVACQAA--------KSLRPDQRCVVILADG 315
             E +LV  + G A+                   P    VVI+  G
Sbjct: 257 DDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGG 302

>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Length = 390

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Salmonella typhimurium [TaxId: 90371]

 Score = 83.0 bits (204), Expect = 5e-18
 Identities = 39/300 (13%), Positives = 84/300 (28%), Gaps = 30/300 (10%)

Query: 42  AKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMV 101
            K E +   G+ K          A+  G  +          G      + +  +K    +
Sbjct: 74  LKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYM 133

Query: 102 VVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQ----MKNAVVLDQ 157
               ++     V+ M+ +GA++I   +  +        A      S              
Sbjct: 134 GAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGP 193

Query: 158 FRNPNNPLSHYETTAEEI---LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVG 214
              P           EE    + D  G++   V+ C  GG+ +           S  L+G
Sbjct: 194 HPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIG 253

Query: 215 ADPFGSILAQPQS-------LNDVPENQISYNEVEGIGYSFAATT--------------- 252
            +P G  +   +           +     +       G    + +               
Sbjct: 254 VEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHA 313

Query: 253 -LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVI 311
            L+      +    D +     + L + EG++    S  A+  A +  +     ++ +V+
Sbjct: 314 YLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVV 373

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	404
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	100.0
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1ve1a1	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1o58a_	293	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1p5ja_	319	L-serine dehydratase {Human (Homo sapiens) [TaxId:	100.0
d1v71a1	318	Hypothetical protein C320.14 (SPCC320.14, SPCC330.	100.0
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	100.0
d1ve5a1	310	Threonine deaminase {Thermus thermophilus [TaxId:	100.0
d1v7ca_	351	Threonine synthase {Thermus thermophilus [TaxId: 2	100.0
d1e5xa_	477	Threonine synthase {Mouse-ear cress (Arabidopsis t	100.0
d1v8za1	386	Tryptophan synthase, beta-subunit {Archaeon Pyroco	100.0
d1qopb_	390	Tryptophan synthase, beta-subunit {Salmonella typh	100.0
d1j0aa_	325	1-aminocyclopropane-1-carboxylate deaminase {Archa	100.0
d1tyza_	338	1-aminocyclopropane-1-carboxylate deaminase {Pseud	100.0
d1f2da_	341	1-aminocyclopropane-1-carboxylate deaminase {Yeast	100.0
d1vb3a1	428	Threonine synthase {Escherichia coli [TaxId: 562]}	99.91
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	99.9
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	99.87
d1ve1a1	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	99.85
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	99.82
d1o58a_	293	O-acetylserine sulfhydrylase (Cysteine synthase) {	99.81
d1kl7a_	511	Threonine synthase {Baker's yeast (Saccharomyces c	99.73
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	99.69
d1p5ja_	319	L-serine dehydratase {Human (Homo sapiens) [TaxId:	99.62
d1ve5a1	310	Threonine deaminase {Thermus thermophilus [TaxId:	99.59
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	99.59
d1v8za1	386	Tryptophan synthase, beta-subunit {Archaeon Pyroco	99.57
d1v71a1	318	Hypothetical protein C320.14 (SPCC320.14, SPCC330.	99.56
d1v7ca_	351	Threonine synthase {Thermus thermophilus [TaxId: 2	99.49
d1qopb_	390	Tryptophan synthase, beta-subunit {Salmonella typh	99.29
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	99.22
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	99.17
d1e5xa_	477	Threonine synthase {Mouse-ear cress (Arabidopsis t	99.11
d1j0aa_	325	1-aminocyclopropane-1-carboxylate deaminase {Archa	99.11
d1tyza_	338	1-aminocyclopropane-1-carboxylate deaminase {Pseud	98.81
d1f2da_	341	1-aminocyclopropane-1-carboxylate deaminase {Yeast	98.74
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.18
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.12
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.96
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	94.08
d1vp8a_	190	Hypothetical protein AF0103 {Archaeoglobus fulgidu	94.0
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.99
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.97
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	93.62
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	93.36
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	93.34
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	93.12
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	92.74
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	92.45
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	92.42
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	92.16
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	91.55
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	91.4
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	91.27
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	91.22
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	90.68
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.52
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.93
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	89.77
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	89.67
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	88.71
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	88.0
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	87.81
d1t57a_	186	Hypothetical protein MTH1675 {Methanobacterium the	87.08
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	86.0
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	85.12
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	84.94
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	84.72
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	84.51
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	82.67
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	81.65

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-61  Score=467.44  Aligned_cols=319  Identities=54%  Similarity=0.921  Sum_probs=267.8

Q ss_pred             CCCcCCCCCCCCeeecCCCCCCCC--CeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHH
Q psy14801         14 SPFTPTVPGKVPLLPQSKQGSILL--PTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAM   91 (404)
Q Consensus        14 ~~~~~~~~g~TPl~~~~~l~~~~g--~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~   91 (404)
                      .|-|...+|+|||+++++|++.+|  ++||+|+|++|||||||||++.+++.+|.++|.++++.+||++|+||||+|+|+
T Consensus        35 ~~~i~~~IG~TPLv~l~~ls~~~G~~~~i~~K~E~~nptGSfKdRga~~~i~~a~~~g~~~~~~~vv~aSsGN~g~a~A~  114 (355)
T d1jbqa_          35 LPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLAL  114 (355)
T ss_dssp             ESSGGGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTCSCTTCEEEEECSSHHHHHHHH
T ss_pred             cccHHHhcCCCCcEECcchhHHhCCCCEEEEEECCCCCccCHHHHHHHHHHHHHHHcCCcccCceEEEecccchhhHHHH
Confidence            345556789999999999988766  589999999999999999999999999999999888899999999999999999


Q ss_pred             HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhH
Q psy14801         92 VAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETT  171 (404)
Q Consensus        92 ~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~  171 (404)
                      +|+++|++|+||||..+++.|+++|+.+||+|+.++......+..+....+.++..+.+..++.+++.|+.+.+.||.++
T Consensus       115 ~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~t~  194 (355)
T d1jbqa_         115 AAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTT  194 (355)
T ss_dssp             HHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHHHHHHHHHHHSTTEECCCTTTCTHHHHHHHHTH
T ss_pred             HHHhccCCeEEEeeccchHHHHHHHHhcCCeEEEecccccchhhhhhhhHHHHHHHhccccccccccCcccchhhhcccc
Confidence            99999999999999999999999999999999999875444444444455556666666777888999988888999999


Q ss_pred             HHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCccccc
Q psy14801        172 AEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAAT  251 (404)
Q Consensus       172 a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  251 (404)
                      ++||++|++.+||++|+++|+||+++|++.+++...++.|+++|+|.++..........   .......+++++....+.
T Consensus       195 ~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~kii~vep~gs~~~~~~~~~~---~~~~~~~i~gi~~~~~~~  271 (355)
T d1jbqa_         195 ADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQ---TEQTTYEVEGIGYDFIPT  271 (355)
T ss_dssp             HHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTCSCSSSGGGGC---CSCCCCSCCSCCCSSCCT
T ss_pred             hhhhhhhcCCCCCeeEecccCCchHHHHHHHHhhcCCcceEEeecccCCcccccccccc---cccccccccccccccchh
Confidence            99999999888999999999999999999999999999999999999987543322211   112233455666666666


Q ss_pred             ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCccccccchhHHhh
Q psy14801        252 TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIE  331 (404)
Q Consensus       252 ~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~  331 (404)
                      .+.....+.++.++|.|++.+++++++++|+++||++|.+++                                      
T Consensus       272 ~~~~~~~~~~~~v~D~ea~~~~~~L~~~eGi~vepSsaa~la--------------------------------------  313 (355)
T d1jbqa_         272 VLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVA--------------------------------------  313 (355)
T ss_dssp             TCCGGGCCEEEEECHHHHHHHHHHHHHHSCCCBCHHHHHHHH--------------------------------------
T ss_pred             hhhhhheeeeccCCHHHHHHHHHHHHHHhCcEEeHHHHHHHH--------------------------------------
Confidence            666778899999999999999999999999999888775555                                      


Q ss_pred             cCccCcHHHHHHhccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhccCCHHHHHHcCCC
Q psy14801        332 KGFLDEAEELEEMIHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIEKGFL  394 (404)
Q Consensus       332 ~~~~~~~~~~~~g~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~~~~~~w~~~~~~~  394 (404)
                                           ++++++++++++++||+|+||+|+||+||+|||+||+++||+
T Consensus       314 ---------------------a~l~~~~~~~~g~~VVvvlcd~G~kY~s~~~~d~~~~~~~~~  355 (355)
T d1jbqa_         314 ---------------------VAVKAAQELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFL  355 (355)
T ss_dssp             ---------------------HHHHHGGGCCTTCEEEEEECBBGGGGTTTTTCHHHHHHTTCC
T ss_pred             ---------------------HHHHHHHhcCCcCEEEEEECCCCccccccccCHHHHHHCCCC
Confidence                                 444445566678899999999999999999999999999985

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.9e-59  Score=445.62  Aligned_cols=310  Identities=37%  Similarity=0.564  Sum_probs=261.8

Q ss_pred             CCCCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCC-CEEEecCCChHHHHHHH
Q psy14801         13 NSPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPG-YTIVEPSSGNTGIGLAM   91 (404)
Q Consensus        13 ~~~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~ssGN~g~a~A~   91 (404)
                      ...-+...+|+|||+++++|++.+|++||+|+|++|||||||||++.+++..++++|.++++ .+||++||||||.|+|+
T Consensus         3 i~~~i~~~iG~TPLv~~~~l~~~~g~~i~~K~E~~nptGSfKdRgA~~~i~~a~~~g~~~~~~~~vv~aSsGN~g~a~A~   82 (320)
T d1z7wa1           3 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAF   82 (320)
T ss_dssp             CCSSGGGGSSCCCEEECCGGGTTCSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHH
T ss_pred             hhhhhhhhcCCCCeEECCCcccccCCEEEEEeCCCCCccCcHHHHHHHHHHHHHHcCCCCCCCceEEeeCCchHHHHHHH
Confidence            34456678999999999999999999999999999999999999999999999999987664 57999999999999999


Q ss_pred             HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhH
Q psy14801         92 VAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETT  171 (404)
Q Consensus        92 ~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~  171 (404)
                      +|+.+|++|+||||..+++.|+++++.+||+|+.++...  +.. .....+.+...+.++.+++++|.||.|++.|+.++
T Consensus        83 ~a~~~g~~~~iv~p~~~~~~k~~~i~~~Ga~vi~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~~t~  159 (320)
T d1z7wa1          83 TAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAK--GMK-GAIAKAEEILAKTPNGYMLQQFENPANPKIHYETT  159 (320)
T ss_dssp             HHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGG--HHH-HHHHHHHHHHHHCTTEEECCTTTCTHHHHHHHHTH
T ss_pred             HHHhhccceEEeehhhhhhhhhhhhhccCcceEEeeccc--ccc-ccchhHHHHHHhCCCceecccccccchHHHhhhhH
Confidence            999999999999999999999999999999999997521  112 22333444444556789999999999899999999


Q ss_pred             HHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCccccc
Q psy14801        172 AEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAAT  251 (404)
Q Consensus       172 a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  251 (404)
                      |+||++|+..+||++|+|+|+|++++|++.+++...|..++++|+|.+++.+....        .....+++++...++.
T Consensus       160 ~~EI~~q~~~~~D~vv~~vGgGg~~~Gi~~~~k~~~~~~~~igve~~~s~~~~~~~--------~~~~~~~gig~~~~~~  231 (320)
T d1z7wa1         160 GPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGK--------PGPHKIQGIGAGFIPS  231 (320)
T ss_dssp             HHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCGGGTCC--------CCCCSCTTSCCSSCCT
T ss_pred             HHHHHHhccCCCCEEEeCCCCCcccchhhhhhhhhhcceeeecccccCCccccCCC--------CCCceeeeccCCcCcc
Confidence            99999999878999999999999999999999999999999999999987653321        1234456677777777


Q ss_pred             ccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCccccccchhHHhh
Q psy14801        252 TLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDEWMIE  331 (404)
Q Consensus       252 ~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~  331 (404)
                      .+....+|+++.|+|.|+..+++.+++++|+++||                                             
T Consensus       232 ~~~~~~id~~~~V~d~e~~~a~~~l~~~eGi~ve~---------------------------------------------  266 (320)
T d1z7wa1         232 VLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGI---------------------------------------------  266 (320)
T ss_dssp             TCCGGGCSEEEEECHHHHHHHHHHHHHHHSCCBCH---------------------------------------------
T ss_pred             hhhhhhcceeeccCHHHHHHHHHHHHHHCCEEEeh---------------------------------------------
Confidence            77778889999999999999999999999997744                                             


Q ss_pred             cCccCcHHHHHHhccchhHHHHHHHHHHhc-CCCCeEEEEEcCCCcchhhccCCHHHHHHcC
Q psy14801        332 KGFLDEAEELEEMIHSGTAMHVACQAAKSL-RPDQRCVVILADGVRNYLTKFISDEWMIEKG  392 (404)
Q Consensus       332 ~~~~~~~~~~~~g~SsGa~~~~a~~~~~~~-~~~~~iv~i~~D~g~rYl~~~~~~~w~~~~~  392 (404)
                                    |||+++++|++++++. .++++||+|+||+|+|||||+|+|+|++|..
T Consensus       267 --------------ssga~~aaa~k~a~~~~~~~~~VV~i~~d~G~kYlst~~~d~~~~e~~  314 (320)
T d1z7wa1         267 --------------SSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERYLSTVLFDATRKEAE  314 (320)
T ss_dssp             --------------HHHHHHHHHHHHHTSGGGTTCEEEEEECBBGGGGTTSGGGHHHHHHHH
T ss_pred             --------------HHHHHHHHHHHHHhhccCCCCEEEEEECCCchhhcccccCHHHHHHHh
Confidence                          4555555555555432 3567999999999999999999999998743

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=100.00  E-value=5.4e-54  Score=403.57  Aligned_cols=289  Identities=35%  Similarity=0.508  Sum_probs=249.8

Q ss_pred             CcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHH
Q psy14801         16 FTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAI   95 (404)
Q Consensus        16 ~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~   95 (404)
                      .|...+|+|||+++++|++.+|++||+|+|++|||||||||++.+++..+.++|...++.+||++|+||||+|+|++|++
T Consensus         2 ~i~~~IG~TPL~~~~~l~~~~g~~iy~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~~vv~aSsGN~g~a~A~~a~~   81 (292)
T d2bhsa1           2 TLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAAL   81 (292)
T ss_dssp             CGGGGSSCCCEEECSSSSCCSSCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTSEEEEECCSHHHHHHHHHHHH
T ss_pred             chhcccCCCceEECCccChhhCCEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhCCcCCCceeeeecccchhHHHHHHHHh
Confidence            35667999999999999999999999999999999999999999999999999988888999999999999999999999


Q ss_pred             cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHH
Q psy14801         96 KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI  175 (404)
Q Consensus        96 ~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei  175 (404)
                      +|++|+||||+.+++.|+++|+.+||+|+.++.+.+   .......+.+..++. ..++.++|+|+.+.+.|+.++|+||
T Consensus        82 ~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~Ei  157 (292)
T d2bhsa1          82 KGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQG---MEGARDLALEMANRG-EGKLLDQFNNPDNPYAHYTTTGPEI  157 (292)
T ss_dssp             HTCEEEEEEESCCCHHHHHHHHHTTCEEEEECTTTH---HHHHHHHHHHHHHHT-SSEECCTTTCTHHHHHHHHTHHHHH
T ss_pred             cCcceEeeeccCchhhhhHHHHHhCCCcceeecccc---hHHHHHHHhhccccc-cccccCCCchhcchhhHHHHHHHHh
Confidence            999999999999999999999999999999986322   122233344444443 6678899999988889999999999


Q ss_pred             HHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccCc
Q psy14801        176 LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDR  255 (404)
Q Consensus       176 ~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  255 (404)
                      ++|+...||.+|+++|+|++++|++.+++...+..++++|+|+++........               .+....+..+..
T Consensus       158 ~~q~~~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~~~i~~Vep~~~~~~~~~~~---------------~~~~~~~~~~~~  222 (292)
T d2bhsa1         158 WQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRR---------------WPTEYLPGIFNA  222 (292)
T ss_dssp             HHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEEECTTCCCTTCCC---------------CCTTTCCTTCCG
T ss_pred             HHhcCCCCCcccccCCCccchhhhhhhhhhccCcceEEEeccccccccccccc---------------cccccccccccc
Confidence            99999889999999999999999999999999999999999998765432111               111222333445


Q ss_pred             cccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcccccc
Q psy14801        256 NVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFI  324 (404)
Q Consensus       256 ~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~~~  324 (404)
                      ...++++.++|.|+.+++++|++.+|+++||++|++++++.++.++ .++.+||+|.||++.+|+++.+
T Consensus       223 ~~~~~~~~v~d~ea~~a~~~L~~~eGi~vepSsgaalaa~~~~~~~-~~~~~VV~il~~~G~kYlst~~  290 (292)
T d2bhsa1         223 SLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAKA-NPDAVVVAIICDRGDRYLSTGV  290 (292)
T ss_dssp             GGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHT-CTTCEEEEEECBBSGGGGGGTC
T ss_pred             cccceEEEcCHHHHHHHHHHHHHHcCeEEeHHHHHHHHHHHHHHHH-CcCCeEEEEECCCCcccccccc
Confidence            6678899999999999999999999999999999999999988765 5788999999999999998754

>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=7.6e-54  Score=404.46  Aligned_cols=297  Identities=39%  Similarity=0.634  Sum_probs=258.3

Q ss_pred             CcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCC--CEEEecCCChHHHHHHHHH
Q psy14801         16 FTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPG--YTIVEPSSGNTGIGLAMVA   93 (404)
Q Consensus        16 ~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~--~~vv~~ssGN~g~a~A~~a   93 (404)
                      +|.-.+|+|||+++++|++..|++||+|+|++|||||||||++.+++.++.++|..+++  ++||++|+||||.|+|++|
T Consensus         2 ri~~~ig~TPLi~~~~l~~~~g~~i~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~~~~vv~~SsGN~g~a~A~~a   81 (302)
T d1ve1a1           2 RVEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIA   81 (302)
T ss_dssp             CGGGGCCCCCEEECCSSSCTTSCEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTTSCCEEEESCCSHHHHHHHHHH
T ss_pred             cccCccCCCCeEECcccchhhCCEEEEEeCCCCcccCcHHHHHHHHHHHHHHhCCCCCCCCcEEEEecCCcchhhhhhhh
Confidence            34556899999999999999999999999999999999999999999999999977654  5799999999999999999


Q ss_pred             HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHH
Q psy14801         94 AIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAE  173 (404)
Q Consensus        94 ~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~  173 (404)
                      +.+|++|++|||..+++.|+.+++.+|++++.++...   +.......+.+..++. +.+|+++|.||.+.+.|+.++|+
T Consensus        82 ~~~g~~~~iv~p~~~~~~~~~~~~~~ga~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~  157 (302)
T d1ve1a1          82 ASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPER---RMLAAREEALRLKEEL-GAFMPDQFKNPANVRAHYETTGP  157 (302)
T ss_dssp             HHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTTT---HHHHHHHHHHHHHHHH-TCBCCCTTTCHHHHHHHHHTHHH
T ss_pred             hccCcceeEeeecccchheeehhhhhhhcchhccccc---chHHHHHHhhhhhhcc-CccccccCccchhHHHHHHHHHH
Confidence            9999999999999999999999999999999998632   2223333344455443 67888999999888889999999


Q ss_pred             HHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCccccccc
Q psy14801        174 EILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTL  253 (404)
Q Consensus       174 ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  253 (404)
                      ||++|++++||++|+|+|+|++++|++.+++...|.+++++|+|.+++.+....        ......++++....+...
T Consensus       158 EI~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~iigve~~~~~~~~~~~--------~~~~~~~g~~~~~~~~~~  229 (302)
T d1ve1a1         158 ELYEALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLSGGK--------MGQHGFQGMGPGFIPENL  229 (302)
T ss_dssp             HHHHHTTTCCSEEEEECSSSHHHHHHHHHHHTTCTTCEEEEEEEGGGCTTTTCC--------CCCCSCTTSCCSSCCTTC
T ss_pred             HHHHHcCCCCCeEEEeecCcHHHHHHHHHHHhcCCCCEEEEEEecccceeeecc--------ccCcccCccCCCcCCchh
Confidence            999999988999999999999999999999999999999999999876543221        112334556666666666


Q ss_pred             CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcccccc
Q psy14801        254 DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFI  324 (404)
Q Consensus       254 ~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~~~  324 (404)
                      .....++.+.|+|.|++.+++.+++++|++++|++|++++|+.++.++..++.+||+|.||++.+|+++.+
T Consensus       230 ~~~~~~~~~~V~d~ea~~a~~~l~~~eGi~v~~ssgaa~aaal~~~~~~~~~~~Vv~i~~g~G~kY~st~~  300 (302)
T d1ve1a1         230 DLSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVARELGPGKRVACISPDGGWKYLSTPL  300 (302)
T ss_dssp             CGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHHCTTCEEEEEECBBSGGGTTSTT
T ss_pred             hhhcceeeeecCHHHHHHHHHHHHHHcCCEEeccHHHHHHHHHHHhHHhCccCeEEEEECCCCchhcChhh
Confidence            77788899999999999999999999999999999999999999999988999999999999999999854

>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=9e-54  Score=401.82  Aligned_cols=289  Identities=39%  Similarity=0.559  Sum_probs=250.9

Q ss_pred             CcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHH
Q psy14801         16 FTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAI   95 (404)
Q Consensus        16 ~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~   95 (404)
                      .+...+|+|||+++++|.    .+||+|+|++|||||||||++.+++.++.++|..++  .|+++|+||||.|+|++|+.
T Consensus         3 ~i~~~ig~TPL~~~~~l~----~~i~~K~E~~nptGSfK~Rga~~~i~~a~~~g~~~~--~vv~~SsGN~g~a~A~~a~~   76 (293)
T d1o58a_           3 MMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKN--GIVEPTSGNMGIAIAMIGAK   76 (293)
T ss_dssp             HHHHHSCCCCEEECTTTC----TTEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCTT--CEEEECSSHHHHHHHHHHHH
T ss_pred             hhhhhcCCCCcEECCCCC----CEEEEEECCCCCccChHHHHHHHHHHHHHHcCCCCc--ceEEecCcchhhHHHHhhhh
Confidence            345678999999998764    589999999999999999999999999999987654  49999999999999999999


Q ss_pred             cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHH
Q psy14801         96 KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI  175 (404)
Q Consensus        96 ~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei  175 (404)
                      +|++|+||||..+++.|+++++.+||+|+.++.+  . +......++.+++++. +.+|.++|.||.+.+.|+.++++||
T Consensus        77 ~g~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~~--~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei  152 (293)
T d1o58a_          77 RGHRVILTMPETMSVERRKVLKMLGAELVLTPGE--L-GMKGAVEKALEISRET-GAHMLNQFENPYNVYSHQFTTGPEI  152 (293)
T ss_dssp             HTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG--G-HHHHHHHHHHHHHHHH-CCBCCCTTTCHHHHHHHHHTHHHHH
T ss_pred             ccceeEeeccccccHHHeeccccCCcEEEEecCc--c-hhhHHHHHHHHHHhcc-CCEEeeeccccceeeeccccHHHhh
Confidence            9999999999999999999999999999999863  2 1223345566677665 5677899999988888999999999


Q ss_pred             HHHhCCCcCEEEEccCCChhHHHHHHHHHHhC-CCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccC
Q psy14801        176 LRDTGGKVDMIVLGCGTGGTASGIGRKIKEKC-PSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLD  254 (404)
Q Consensus       176 ~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~-~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  254 (404)
                      ++|+.++||++|+|+|+|++++|++.+++... ++.|+++|+|++++.+....        ...+.+++++....+..++
T Consensus       153 ~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~~ii~vep~~~~~l~~~~--------~~~~~i~~i~~~~~~~~~~  224 (293)
T d1o58a_         153 LKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQ--------PGKHAIQGIGAGFVPKILD  224 (293)
T ss_dssp             HHHTTTCCSEEEEECSSSHHHHHHHHHHHHHHGGGSEEEEEEETTSCTTTTCC--------CCCCCCTTSCCSSCCTTCC
T ss_pred             hhhcCCCCCEEEEecCcchhHHHHHHHHHHHCCCCCeEEEEecCCCccccCCC--------cCCcccccCCCCccchhhh
Confidence            99999889999999999999999999999854 45899999999987654321        1223455677777777777


Q ss_pred             ccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcccc
Q psy14801        255 RNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK  322 (404)
Q Consensus       255 ~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~  322 (404)
                      ...+|+++.|+|.|++++++.+++++|+++||++|.+++++.++.++..++.+||+|.||++.+|++.
T Consensus       225 ~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~epssaa~~aa~~~~a~~~~~~~~Vv~i~~d~g~kYls~  292 (293)
T d1o58a_         225 RSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLGPDARVVTVAPDHAERYLSI  292 (293)
T ss_dssp             GGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHTSCTTCCEEEEECBBGGGCTTT
T ss_pred             hhhCcEEEEECHHHHHHHHHHHHHHcCCEEeHHHHHHHHHHHHHHHHcCCcCEEEEEECCCCcccccC
Confidence            78889999999999999999999999999999999999999999988888999999999999999875

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=1.7e-52  Score=396.39  Aligned_cols=303  Identities=36%  Similarity=0.479  Sum_probs=253.7

Q ss_pred             CcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHH
Q psy14801         16 FTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAI   95 (404)
Q Consensus        16 ~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~   95 (404)
                      -+...+|+|||+++++|+.  +++||+|+|++|||||||||++.+++.++.+.|.+.++++||++|+||||.|+|++|++
T Consensus         5 ~~~~~ig~TPLv~~~~l~~--~~~I~lK~E~~nptGSfK~RgA~~~i~~a~~~g~~~~~~~vv~~SsGN~g~a~A~~a~~   82 (310)
T d1y7la1           5 DNSYSIGNTPLVRLKHFGH--NGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGKEIVDATSGNTGIALAYVAAA   82 (310)
T ss_dssp             SGGGGCCCCCEEECSSSSS--TTCEEEEETTSSGGGBTHHHHHHHHHHHHHHTTSSCTTCEEEESCCSHHHHHHHHHHHH
T ss_pred             hhhhhcCCCCeEECCCCCC--CCEEEEEECCCCCcCcCHHHHHHHHHHHHHHcCCCCCCceeeeecCCCchHHHHHHHHH
Confidence            3455689999999998876  57899999999999999999999999999999998899999999999999999999999


Q ss_pred             cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHH
Q psy14801         96 KGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEI  175 (404)
Q Consensus        96 ~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei  175 (404)
                      +|++|+||||.+++..|+++++.+||+|+.+++.  ++......+......+.....++.++|.||.+...|+.++|.||
T Consensus        83 ~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~Ei  160 (310)
T d1y7la1          83 RGYKITLTMPETMSLERKRLLCGLGVNLVLTEGA--KGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEI  160 (310)
T ss_dssp             HTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG--GHHHHHHHHHHHHHHHCTTTEECCCTTTCTHHHHHHHHTHHHHH
T ss_pred             hhccccccchhhhhhhhhhhHHHhCCceEeccCc--cccchhhHHHHHHHHhhcCccccCCCCcchhhHHHhhhhHHHHH
Confidence            9999999999999999999999999999999863  22221211112222233345677799999987778999999999


Q ss_pred             HHHhCCCcCEEEEccCCChhHHHHHHHHHH-hCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccC
Q psy14801        176 LRDTGGKVDMIVLGCGTGGTASGIGRKIKE-KCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLD  254 (404)
Q Consensus       176 ~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~-~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  254 (404)
                      ++|+.++||.+|+++|+|++++|++.+++. ..|.+++++|+|.+++.......+.  ......+...+++....+..++
T Consensus       161 ~~~~~~~~d~vv~~~G~Gg~~~G~~~~lk~~~~~~~~~i~ve~~~~~~~~~~~~~~--~~~~~~~~~~gig~~~~~~~~~  238 (310)
T d1y7la1         161 WKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGE--EVKPGPHKIQGIGAGFIPKNLD  238 (310)
T ss_dssp             HHHTTTCEEEEEEECSSSHHHHHHHHHHHHTSCCCCEEEEEEETTSCHHHHHHHTC--CCCCCCCSCTTSCCSSCCTTCC
T ss_pred             HHhcCCCCCEEEecCcCCcchhHHHHHHHHhhcccceeccccccCchhhhhhhcCC--ccccCCceeeecccccccHHHh
Confidence            999998899999999999999999999985 6799999999999986433211111  0112234566777777777777


Q ss_pred             ccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCCCCcccccc
Q psy14801        255 RNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGVRNYLTKFI  324 (404)
Q Consensus       255 ~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~~~~~~~~~  324 (404)
                      ....++++.++|.|+++++++|++++|+++||++|.+++++.+++++. .++.+||+|.||++.+|+++.+
T Consensus       239 ~~~~~~~~~v~d~ea~~~~~~l~~~eGi~vepssaa~laaa~~~a~~~~~~~~~vV~vlcd~g~kY~~t~~  309 (310)
T d1y7la1         239 LSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLPEFADKLIVVILPSASERYLSTAL  309 (310)
T ss_dssp             GGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHTSGGGTTCEEEEEECBBCSSCCCTTT
T ss_pred             hhhcceeccCCHHHHHHHHHHHHHHcCCEEeHHHHHHHHHHHHHHhhccCCcCEEEEEECCCcchhcCCCC
Confidence            788899999999999999999999999999999999999999987654 4678999999999999999875

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=6.9e-50  Score=384.10  Aligned_cols=282  Identities=21%  Similarity=0.233  Sum_probs=233.2

Q ss_pred             CCCCeeecCCCCCCCCCeEEEEeCCCCCCC-ChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeE
Q psy14801         22 GKVPLLPQSKQGSILLPTTDAKCEFMNPTG-SLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKM  100 (404)
Q Consensus        22 g~TPl~~~~~l~~~~g~~l~~K~E~~~ptG-S~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~  100 (404)
                      .+|||+++ ++....|++||+|+|++|||| |||||++.+++.+|.+  .++++.+||++|+||||+|+|++|+.+|++|
T Consensus        94 ~PTPLvrl-~l~~~~G~~IylKlE~~NPtGgSfKdR~A~~~i~~A~~--~~~~g~~VVeaSSGN~GiAlA~~aa~lGik~  170 (382)
T d1wkva1          94 KPTPLVRS-RLQLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISRLSR--RVEKGSLVADATSSNFGVALSAVARLYGYRA  170 (382)
T ss_dssp             CSCCEEEC-CCCCSTTEEEEEEEGGGSTTTSBTTHHHHHHHHHHHTT--TSCTTCEEEEECCHHHHHHHHHHHHHTTCEE
T ss_pred             CCCCEEEC-CCCCCCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHh--ccCCCCEEEEeCCcHHHHHHHHHHHHcCCCE
Confidence            46999998 566677899999999999986 9999999999998754  4567789999999999999999999999999


Q ss_pred             EEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHHHhC
Q psy14801        101 VVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTG  180 (404)
Q Consensus       101 ~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~q~~  180 (404)
                      +||||.++++.|+++|+.+||+|+.++...+  .. ...+++.+.+++. +.+|+++|.||.++..|+.++++||++|+.
T Consensus       171 ~Iv~P~~~~~~K~~~ira~GAeVi~~~~~~~--~~-~~~~~a~~~a~~~-~~~~~~q~~N~~~~~~h~~ttg~EI~eQl~  246 (382)
T d1wkva1         171 RVYLPGAAEEFGKLLPRLLGAQVIVDPEAPS--TV-HLLPRVMKDSKNE-GFVHVNQFYNDANFEAHMRGTAREIFVQSR  246 (382)
T ss_dssp             EEEEETTSCHHHHHHHHHTTCEEEEETTCSS--SG-GGHHHHHHHHHHH-CCEECCTTTCHHHHHHHHHTHHHHHHHHHH
T ss_pred             EEEeeccccccccccccccCcceeecCcchh--hH-HHHHHHhhhcccc-CccccccccccceeeehhhcchHHHHHHhh
Confidence            9999999999999999999999999987432  22 2234455555554 678889999999899999999999999985


Q ss_pred             ---CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccccCccc
Q psy14801        181 ---GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATTLDRNV  257 (404)
Q Consensus       181 ---~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  257 (404)
                         ..+|.+|+++|+|++++|++.+++...|.+|+|+|+|.++......               .+++....+... ...
T Consensus       247 ~~~~~~d~vv~~vGtGG~~~Gi~~~lk~~~p~vkiigVep~~~~~i~g~---------------~~i~~g~~~~~~-~d~  310 (382)
T d1wkva1         247 RGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGI---------------RRVETGMLWINM-LDI  310 (382)
T ss_dssp             HTTCCEEEEEECCSSSHHHHHHHHHHHHHCTTCEEEEEEECTTCCCTTC---------------CCGGGCCSHHHH-SCC
T ss_pred             cCCCceeEEEEecccccccccceeehhhhCCccceeEeccccccccccc---------------cccccCccCccc-ccc
Confidence               2589999999999999999999999999999999999877543110               011111111111 123


Q ss_pred             cCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcC-CCCeEEEEecCCCCCccccccch
Q psy14801        258 IDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLR-PDQRCVVILADGVRNYLTKFISD  326 (404)
Q Consensus       258 ~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~-~~~~vv~v~~~~~~~~~~~~~~~  326 (404)
                      .+.+..++|.|++++++++++++|+++||+||++++++.+++++.. ++.++|+|.||++.+|++++++.
T Consensus       311 ~~~i~~Vsd~Eai~a~r~La~~EGI~vgpSSGaavaaa~k~a~~~~~~~~~vVvIlcD~G~rYlstiyN~  380 (382)
T d1wkva1         311 SYTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVVVVPDTGFKYLSLVQNA  380 (382)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHTTCSCSEEEEEEECBBGGGCHHHHHHH
T ss_pred             ceEEEEECHHHHHHHHHHHHHHcCCEEcHHHHHHHHHHHHHHhhccCCCCCEEEEECCCCccchHhhccC
Confidence            4677889999999999999999999999999999999999888632 45578889999999999988753

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=5.5e-50  Score=378.04  Aligned_cols=295  Identities=37%  Similarity=0.503  Sum_probs=239.4

Q ss_pred             CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801         15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA   94 (404)
Q Consensus        15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~   94 (404)
                      .-+.+.+|+|||++++++.   +.+||+|+|++|||||||+|++.+++.+++++|.++++.+|+++|+||||.|+|++|+
T Consensus         5 ~~i~~~ig~TPLi~L~~l~---~~~i~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~~vv~assGn~g~a~A~~a~   81 (302)
T d1fcja_           5 EDNSLTIGHTPLVRLNRIG---NGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVELVEPTNGNTGIALAYVAA   81 (302)
T ss_dssp             SSGGGGCCCCCEEECSSSS---SSCEEEEETTSSGGGBTHHHHHHHHHHHHHHHTCCCTTCEEEEECSSHHHHHHHHHHH
T ss_pred             hHHHHhhCCCCcEECCccC---CCEEEEEecCCCCCCCCHHHHHHHHHHHHHHcCCCCCCceEEEeccccchhHHHHHHH
Confidence            3455678999999987654   5699999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHH
Q psy14801         95 IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEE  174 (404)
Q Consensus        95 ~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~e  174 (404)
                      .+|++|+||||..+++.|+.+++.+|++|+.+++.  +++.........+..++....++..++.++.+...|+.++|+|
T Consensus        82 ~~g~~~~i~~p~~~~~~k~~~~~~~ga~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~E  159 (302)
T d1fcja_          82 ARGYKLTLTMPETMSIERRKLLKALGANLVLTEGA--KGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPE  159 (302)
T ss_dssp             HHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG--GHHHHHHHHHHHHHHTSTTTEEECCTTTCTHHHHHHHHTHHHH
T ss_pred             HhccCCceEEeecCcHHHHHHHHHhccceEEeccc--cccchhhhHHHHHHhhhccceeccccccccchhHHHHhHHHHH
Confidence            99999999999999999999999999999999873  2222222112222223333456667888888788899999999


Q ss_pred             HHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEE--EEEcCCCCcccccCCCCCCCCCCCccccccCCCCcccccc
Q psy14801        175 ILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKL--VGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFAATT  252 (404)
Q Consensus       175 i~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~v--i~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  252 (404)
                      |++|++.+||++|+|+|+|++++|++.+++...+..++  +.++|..+.........  .......+.+++++....+.+
T Consensus       160 i~e~~~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~~~~v~~~~~~s~~~~~~~~~--~~~~~~~~~~~gig~~~~~~~  237 (302)
T d1fcja_         160 IWEDTDGQVDVFISGVGTGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAG--EEIKPGPHKIQGIGAGFIPGN  237 (302)
T ss_dssp             HHHHTTTCCCEEEEECSSSHHHHHHHHHHHTTTCCTTCEEEEEEETTSCHHHHHHTT--CCCCCCCCSCTTSCCSSCCTT
T ss_pred             HHHhcCCCCCEEEEcCCCccccccceeeeeeccccccccccccccccchhhhccccc--cccccCCceecccCCCcCchh
Confidence            99999988999999999999999999999998886654  45666655432111111  111222344566777777777


Q ss_pred             cCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh-cCCCCeEEEEecCCC
Q psy14801        253 LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS-LRPDQRCVVILADGV  316 (404)
Q Consensus       253 ~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~-~~~~~~vv~v~~~~~  316 (404)
                      ++....+.++.|+|.|++++++.|++++|+++||++|.+++++.+++++ ..++.+||+|.||+|
T Consensus       238 l~~~~~d~~~~Vsd~ea~~a~~~l~~~~gi~~epssaa~laaa~~l~~~~~~~~~~vvvilc~~G  302 (302)
T d1fcja_         238 LDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSG  302 (302)
T ss_dssp             CCGGGCSEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTSGGGTTCCEEEEECBCC
T ss_pred             hhcccCcEEEEECHHHHHHHHHHHHHHcCCEEcHHHHHHHHHHHHHHHhcCCCcCeEEEEeCCCC
Confidence            8888889999999999999999999999999999999999999988764 347889999999875

>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: L-serine dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-48  Score=372.06  Aligned_cols=289  Identities=18%  Similarity=0.199  Sum_probs=238.2

Q ss_pred             CCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEE
Q psy14801         23 KVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVV  102 (404)
Q Consensus        23 ~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i  102 (404)
                      +|||+++++|++.+|++||+|+|++|||||||||++.+++.++.++|.    ++||++|+||||+|+|++|+++|++|+|
T Consensus         7 ~TPl~~~~~L~~~~g~~i~~K~E~~nptGSfK~R~a~~~~~~a~~~g~----~~vv~aSsGN~g~a~A~~a~~~G~~~~i   82 (319)
T d1p5ja_           7 KTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGC----AHFVCSSAGNAGMAAAYAARQLGVPATI   82 (319)
T ss_dssp             CCCEEEEHHHHHHHTSCEEEECGGGSGGGBTTHHHHHHHHHHHHHTTC----CEEEECCSSHHHHHHHHHHHHHTCCEEE
T ss_pred             eCCcEEhHHhHHHHCCEEEEEeCCCCCCCCcHHHHHHHHHHHHHHcCC----CEEEEeCCCcHHHHHHHHhhhcccccee
Confidence            899999999999899999999999999999999999999999999997    7899999999999999999999999999


Q ss_pred             EecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHHHHhCCC
Q psy14801        103 VMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEILRDTGGK  182 (404)
Q Consensus       103 v~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~~q~~~~  182 (404)
                      |||+++++.|+++++.+|++|+.++.  ++   .++.+.+++++++.++.+|+++|.||. .+.|+.++++||++|+.+.
T Consensus        83 ~~p~~~~~~k~~~~~~~Ga~v~~~~~--~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~g~~~~~~Ei~~q~~~~  156 (319)
T d1p5ja_          83 VVPGTTPALTIERLKNEGATCKVVGE--LL---DEAFELAKALAKNNPGWVYIPPFDDPL-IWEGHASIVKELKETLWEK  156 (319)
T ss_dssp             EECTTCCHHHHHHHHHTTCEEEECCS--CH---HHHHHHHHHHHHHSTTEEECCSSCCHH-HHHHHTHHHHHHHHHCSSC
T ss_pred             ccccccccccccccccceeccccccc--cc---hhHHHHHHHHhhccCcccccccccccc-cccccchhhhhhhccccCC
Confidence            99999999999999999999999986  33   455677888888877788899999986 5789999999999999878


Q ss_pred             cCEEEEccCCChhHHHHHHHHHHhC-CCcEEEEEcCCCCcccccC-CCCCCCCCCCccccccCCCCccc-c--cccCccc
Q psy14801        183 VDMIVLGCGTGGTASGIGRKIKEKC-PSCKLVGADPFGSILAQPQ-SLNDVPENQISYNEVEGIGYSFA-A--TTLDRNV  257 (404)
Q Consensus       183 ~~~vvv~~gsG~~~~Gi~la~~~~~-~~~~vi~V~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~-~--~~~~~~~  257 (404)
                      ||.+|+++|+|++++|++.+++... +++++++|+|.+++.+... ..+.........+...+++.... +  ..+....
T Consensus       157 ~d~vv~~vg~Gg~~~g~~~~~~~~~~~~~~~i~ve~~~~~~~~~s~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~  236 (319)
T d1p5ja_         157 PGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGSQALKLFQEH  236 (319)
T ss_dssp             CSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCCCCSCGGGCCSSCCHHHHHHHHHS
T ss_pred             CceeeecccCCcchhhhHHHHHHhccCCeeeeecccccccccchhhhccccccccccccccccccccccccccchhhhhc
Confidence            9999999999999999999998765 7899999999998643211 01111111122233444443321 1  1222456


Q ss_pred             cCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh--------cCCCCeEEEEecCCCCCccc
Q psy14801        258 IDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--------LRPDQRCVVILADGVRNYLT  321 (404)
Q Consensus       258 ~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~--------~~~~~~vv~v~~~~~~~~~~  321 (404)
                      .+..+.|+|+|++++++.+++++|+++||+||.+++|+.+++.+        ..++.++|++.++|+...++
T Consensus       237 ~~~~~~V~d~e~~~a~~~l~~~egi~~epssa~~~aal~~~~~~~~~~~~~~~~~~~~vVvv~~~G~n~d~~  308 (319)
T d1p5ja_         237 PIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGSNISLA  308 (319)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTTHHHHHHHTTSSCSSCSCEEEECCBCSSCCHH
T ss_pred             cceeeecCHHHHHHHHHHHHHHcCEEEeHHHHHHHHHHHHHHHHHHHHhccccCCCCCEEEEEcCCCCCCHH
Confidence            78899999999999999999999999999999999999765432        24567888888877654433

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=6.9e-49  Score=373.18  Aligned_cols=290  Identities=19%  Similarity=0.266  Sum_probs=234.7

Q ss_pred             CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801         15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA   94 (404)
Q Consensus        15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~   94 (404)
                      .++..++++|||+++++|++.+|++||+|+|++|||||||||++.+++.++.+.+..   ..|+++|+||||+++|++|+
T Consensus        13 ~ri~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~~~~~~~~~~~---~~vv~~ssGN~g~a~A~~a~   89 (318)
T d1v71a1          13 ERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQRK---AGVLTFSSGNHAQAIALSAK   89 (318)
T ss_dssp             HHHTTTSCCCCEECCHHHHHHHTSEEEEEEGGGSGGGBTHHHHHHHHHTTCCHHHHH---HCEEECCSSHHHHHHHHHHH
T ss_pred             HHHhccCCCCCEEEchhhhHHHCCEEEEEeCCCCCCCCHHHHHHHHHHHHhhhcccc---ceeeeeccchhhHHHHHhhc
Confidence            345567789999999999999999999999999999999999999999887554431   46999999999999999999


Q ss_pred             HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHH
Q psy14801         95 IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEE  174 (404)
Q Consensus        95 ~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~e  174 (404)
                      .+|++|+||||.++++.|+++|+.+||+|+.++.  .+++.   .+.+++++++. +.+|+++|.||. .+.||.++|+|
T Consensus        90 ~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~--~~~~~---~~~a~~~a~~~-g~~~~~~~~~~~-~~~g~~t~~~E  162 (318)
T d1v71a1          90 ILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDR--YKDDR---EKMAKEISERE-GLTIIPPYDHPH-VLAGQGTAAKE  162 (318)
T ss_dssp             HTTCCEEEEEETTCCHHHHHHHHHTTCEEEEECT--TTTCH---HHHHHHHHHHH-TCBCCCSSSSHH-HHHHHTHHHHH
T ss_pred             ccccceeecccccccHHHHHHHHHcCCcEEeccC--CchHH---HHHHHHHHHhc-CCEecCCccccc-cccccchHHHH
Confidence            9999999999999999999999999999999986  45543   45577888765 578889999995 67899999999


Q ss_pred             HHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCC-CCCCCCCCccccccCCCCc---ccc
Q psy14801        175 ILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSL-NDVPENQISYNEVEGIGYS---FAA  250 (404)
Q Consensus       175 i~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~---~~~  250 (404)
                      |++|+. .+|++|+|+|+||+++|++.+++...|..++++|+|.++........ ..............++...   ..+
T Consensus       163 i~~q~~-~~d~vvv~~G~GG~~~Gi~~~~~~~~~~~~ii~v~~~~~~~~~~s~~~~~~~~~~~~~~~a~~~~~~~~~~~~  241 (318)
T d1v71a1         163 LFEEVG-PLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLGNYT  241 (318)
T ss_dssp             HHHHHC-CCSEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCHHHHHHHHTSCCCCCCCCCSCTTSCCSSCCHHH
T ss_pred             HHHhcC-CCCEEEEcCCchHHHHHHHHHHHhhCCCceeecccccchhhhhhccccccccccCCCCccccccccCCcchHH
Confidence            999997 69999999999999999999999999999999999987643211000 0000000111112222111   122


Q ss_pred             cccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14801        251 TTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGV  316 (404)
Q Consensus       251 ~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~  316 (404)
                      ..+.....+..+.++|.|+.++++.+++++|+++||++|.+++|+.++.++ .++.+||++.||+.
T Consensus       242 ~~~~~~~~~~~~~v~d~e~~~a~~~la~~egi~~eps~a~~lAa~~~~~~~-~~~~~Vv~il~GGN  306 (318)
T d1v71a1         242 FSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVEPTGCLSFAAARAMKEK-LKNKRIGIIISGGN  306 (318)
T ss_dssp             HHHHHHHCCEEEEECHHHHHHHHHHHHHHTCCCCCGGGGHHHHHHHHTGGG-GTTCEEEEEECBCC
T ss_pred             HHHHHhccCceeeECHHHHHHHHHHHHHHcCcEEeHHHHHHHHHHHHhHHH-cCCCcEEEEeCCCC
Confidence            233455678899999999999999999999999999999999998776554 46889999999874

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.6e-48  Score=367.37  Aligned_cols=289  Identities=20%  Similarity=0.205  Sum_probs=235.7

Q ss_pred             cCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHc
Q psy14801         17 TPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIK   96 (404)
Q Consensus        17 ~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~   96 (404)
                      +...+++|||+++++|++.+|++||+|+|++|||||||||++.+++..+.+++.   ..+|+++|+||||.|+|++|+.+
T Consensus        21 v~~~~~~TPL~~~~~L~~~lg~~i~~K~E~~nptGS~KdRga~~~i~~~~~~~~---~~~vv~assGN~g~a~A~~a~~~   97 (331)
T d1tdja1          21 VYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQK---AHGVITASAGNHAQGVAFSSARL   97 (331)
T ss_dssp             GGGTCCCCCEEECHHHHHHTTSEEEEECGGGSTTSSSTHHHHHHHHHTTTTSSC---SSSCEEEECSSSHHHHHHHHHHT
T ss_pred             cceeccCCceeEHHHhhHHHCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhCC---CCeeeecccchhHHHHHHhhccc
Confidence            444678999999999999999999999999999999999999999988766553   36799999999999999999999


Q ss_pred             CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHHHH
Q psy14801         97 GYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEEIL  176 (404)
Q Consensus        97 G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~ei~  176 (404)
                      |++|+||||..++..|+++|+.+||+|+.++.  .+   .+..+.+.++.++. +.+|.++|.||. .+.||.+++.||+
T Consensus        98 g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~--~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~g~~t~~~Ei~  170 (331)
T d1tdja1          98 GVKALIVMPTATADIKVDAVRGFGGEVLLHGA--NF---DEAKAKAIELSQQQ-GFTWVPPFDHPM-VIAGQGTLALELL  170 (331)
T ss_dssp             TCCEEEECCSSCCHHHHHHHHHHSCEEECCCS--SH---HHHHHHHHHHHHHH-CCEECCSSCCHH-HHHHHHHHHHHHH
T ss_pred             cccceeeccccchhHHHHHHHhcCCEEEEcCc--cc---ccchhhhhhhhhcC-CCccccccCChH-HhhhhhhHHHHHH
Confidence            99999999999999999999999999999875  23   23344566666654 678889999996 5789999999999


Q ss_pred             HHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCC-CCCCCCCCccccccCCCCccc---ccc
Q psy14801        177 RDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSL-NDVPENQISYNEVEGIGYSFA---ATT  252 (404)
Q Consensus       177 ~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~---~~~  252 (404)
                      +|.. +||++|+++|+|++++|++.+++...|.+|+++|+|++++.+..... +.............++....+   ..+
T Consensus       171 ~q~~-~~D~vv~~~G~GG~~aG~~~~~~~~~~~~~ii~ve~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~  249 (331)
T d1tdja1         171 QQDA-HLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFR  249 (331)
T ss_dssp             HHCT-TCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTTCHHHHHHHHTSCCCCSCCCSSSSTTCCSSCCCHHHH
T ss_pred             HhcC-CCCEEEEeCChhHHHHHHHHHHHHhCCCcEEEEecccccchHHHHHhCCCeeecCCCCceeccccCCCCCHHHHH
Confidence            9986 69999999999999999999999999999999999999864321100 000001111222333333222   122


Q ss_pred             cCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhc-CCCCeEEEEecCCC
Q psy14801        253 LDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSL-RPDQRCVVILADGV  316 (404)
Q Consensus       253 ~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~-~~~~~vv~v~~~~~  316 (404)
                      +.....++.+.++|.|+.++++.+++.+|+++||++|.+++|+.+++++. .++.+||+|.||+.
T Consensus       250 ~~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~eps~~~alAal~~~~~~~~~~g~~Vv~vltGgn  314 (331)
T d1tdja1         250 LCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNIRGERLAHILSGAN  314 (331)
T ss_dssp             HHTTSCCEEEEECHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHTCCSCEEEEECCCCC
T ss_pred             HhhccCCEEEEecHHHHHHHHHHHHHHcCcEEeHHHHHHHHHHHHHHhhccCCcCeEEEEeCCCC
Confidence            33456789999999999999999999999999999999999999887653 36789999999874

>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=7.9e-48  Score=364.54  Aligned_cols=289  Identities=20%  Similarity=0.251  Sum_probs=228.0

Q ss_pred             CCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHH
Q psy14801         15 PFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAA   94 (404)
Q Consensus        15 ~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~   94 (404)
                      .+|...+|+|||+++++|++.+|++||+|+|++|||||||||++.+++.++..      ..+|+++|+||||.|+|++|+
T Consensus        11 ~~i~~~ig~TPL~~~~~L~~~~g~~i~~K~E~~nPtGSfKdRgA~~~~~~~~~------~~~vv~aSsGN~g~a~A~~aa   84 (310)
T d1ve5a1          11 RRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALEN------PKGLLAVSSGNHAQGVAYAAQ   84 (310)
T ss_dssp             HHHGGGSCCCCEEECHHHHHHTTSEEEEEEGGGSGGGBTHHHHHHHHHHHSSS------CCCEEEECSSHHHHHHHHHHH
T ss_pred             HHHhCcCCCCceeEhhhhhHHhCCEEEEEeCCCCCcCCcHHHHHHHHHHHhcc------cCCccccCchhhHHHHHHHHH
Confidence            34455678999999999998889999999999999999999999877654321      256999999999999999999


Q ss_pred             HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhHHHH
Q psy14801         95 IKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETTAEE  174 (404)
Q Consensus        95 ~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~a~e  174 (404)
                      .+|++|+||||+++++.|+++|+.+|++++.++.  .+++.   .+.+++++++. +.+|+++|.||. .+.|+.++++|
T Consensus        85 ~~G~~~~i~vp~~~~~~~~~~~~~~Ga~vi~~~~--~~~~~---~~~a~~~~~~~-~~~~~~~~~np~-~~~g~~t~~~E  157 (310)
T d1ve5a1          85 VLGVKALVVMPEDASPYKKACARAYGAEVVDRGV--TAKNR---EEVARALQEET-GYALIHPFDDPL-VIAGQGTAGLE  157 (310)
T ss_dssp             HHTCCEEEECCCC--CCHHHHHHHTTCEEECTTC--CTTTH---HHHHHHHHHHH-CCEECCSSSSHH-HHHHHHHHHHH
T ss_pred             HcCCeEEEeecccchHHHHHHHhhhccccceeec--cchhH---HHHHHHHHHhc-CCcCCCCCCChh-hHhhhhhhHHH
Confidence            9999999999999999999999999999999986  45543   45577777765 678899999997 57889999999


Q ss_pred             HHHHhC---CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCC-CCCCC-CCCccccccCCCC---
Q psy14801        175 ILRDTG---GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSL-NDVPE-NQISYNEVEGIGY---  246 (404)
Q Consensus       175 i~~q~~---~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~-~~~~~-~~~~~~~~~~i~~---  246 (404)
                      |++|+.   ..||.+|+++|+|++++|++.+++...|..++++|+|.++..+..... +.... .........++..   
T Consensus       158 i~~q~~~~~~~~d~vv~~~g~Gg~~~g~~~~~~~~~~~~~ii~ve~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  237 (310)
T d1ve5a1         158 LLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTLSL  237 (310)
T ss_dssp             HHHHHHHHTCCCSEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGGCCSSC
T ss_pred             HHHHHHhcCCceeeeeeccCcchhhhhhhhhhhccCCccceEEEEeeccchhhhhhccccccccCccccccccccCCCCc
Confidence            999975   359999999999999999999999999999999999998753321100 00000 0001111222211   


Q ss_pred             cccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14801        247 SFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRN  318 (404)
Q Consensus       247 ~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~  318 (404)
                      ...+..+.....|+++.|+|.|+.+++++|++++|+++||++|.+++++.++.++.  +.+||++.||+.-.
T Consensus       238 g~~~~~~~~~~~d~~v~V~d~e~~~a~~~La~~eGi~vepssaa~lAa~~~~~~~~--~~~Vvvvl~GgN~d  307 (310)
T d1ve5a1         238 GERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEPTGALPLAAVLEHGARL--PQTLALLLSGGNRD  307 (310)
T ss_dssp             CTTTHHHHHHHCCEEEEECHHHHHHHHHHHHHHTCBCCCGGGGHHHHHHHHHGGGS--CSEEEEEECBCCCC
T ss_pred             chhhHHHhcccCCeEEEECHHHHHHHHHHHHHHcCCEEcHHHHHHHHHHHHhhHhc--CCCEEEEeCCCCcc
Confidence            11122233456789999999999999999999999999999999999998876654  46899999987543

>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.3e-44  Score=346.44  Aligned_cols=298  Identities=21%  Similarity=0.232  Sum_probs=236.3

Q ss_pred             CCcCCCCCCCCeeecCCC--CCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHH
Q psy14801         15 PFTPTVPGKVPLLPQSKQ--GSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMV   92 (404)
Q Consensus        15 ~~~~~~~g~TPl~~~~~l--~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~   92 (404)
                      +++.+.+|+|||++++++  +...|++||+|+|++|||||||||++.+++.++.++|.    +++|++|+||||.++|++
T Consensus        20 ~~i~~~~gnTPLv~l~~~~l~~~~g~~i~~K~E~~nptGSfK~R~a~~~i~~a~~~g~----~~iv~~SsGN~g~a~a~~   95 (351)
T d1v7ca_          20 PVISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGA----QAVACASTGNTAASAAAY   95 (351)
T ss_dssp             CCCCSCCCCCCEEECCCCHHHHTTTEEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTC----SEEEEECSSHHHHHHHHH
T ss_pred             CccccCCCCCCCeECCCcchhhccCCEEEEEEcCCCCccChHHHHHHHHHHHHHhcCC----CeeeeeccccHHHHHHHH
Confidence            457788999999999874  56788999999999999999999999999999999886    899999999999999999


Q ss_pred             HHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCCCCChhhHHhhH
Q psy14801         93 AAIKGYKMVVVMPMKM-SKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRNPNNPLSHYETT  171 (404)
Q Consensus        93 a~~~G~~~~iv~p~~~-~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~np~~si~g~~~~  171 (404)
                      |+++|++|+||||... +..+..+++.+||+|+.+++  ++   ++.++.+++++++.+ .++ ..++||. .+.|+.++
T Consensus        96 a~~~g~~~~i~~p~~~~~~~~~~~~~~~Ga~vi~~~~--~~---~~~~~~a~~l~~~~~-~~~-~~~~~~~-~~~g~~t~  167 (351)
T d1v7ca_          96 AARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEG--NF---DDALRLTQKLTEAFP-VAL-VNSVNPH-RLEGQKTL  167 (351)
T ss_dssp             HHHHTCEEEEEEETTCSCHHHHHHHHHTTCEEEEEES--CH---HHHHHHHHHHHHHSS-CEE-CSTTSHH-HHHHHTHH
T ss_pred             HhhhcccceeecCCchHHHHHHHhhhcCCCceEeecc--cc---chhhhhHHHHhhhhc-ccc-ccccCch-hhhhhhhH
Confidence            9999999999999865 56788889999999999986  23   455777888888764 333 3456664 67899999


Q ss_pred             HHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHh------CCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCC
Q psy14801        172 AEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEK------CPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIG  245 (404)
Q Consensus       172 a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~------~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~  245 (404)
                      ++||++|+...+|.+++++|+|++++|++.+++..      .+..++++|++.++...........+.............
T Consensus       168 ~~Ei~eQl~~~~d~~~~~~g~gg~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (351)
T d1v7ca_         168 AFEVVDELGDAPHYHALPVGNAGNITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVERPETLATAIRIGNPA  247 (351)
T ss_dssp             HHHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHTTSCSSCCEEEEEEEGGGCHHHHTSCCSSCCCSCGGGCCSSCT
T ss_pred             HHHHHHHHhhhccceeeeecccCCcchhHHHHHHHhhcccccCCcceeeeeccccchhhhcccccCCcccccccccccCc
Confidence            99999999988999999999999999999887763      355689999998875432211111111111111111111


Q ss_pred             CcccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHh--cCCCCeEEEEecCCCCCccccc
Q psy14801        246 YSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLTKF  323 (404)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~--~~~~~~vv~v~~~~~~~~~~~~  323 (404)
                      .............+.++.|+|+|+.++++.+++++|+++||+||.+++|+.+++++  .+++.+||++.||++.+|.+..
T Consensus       248 ~~~~~~~~~~~~~~~~~~V~d~ea~~a~~~l~~~eGi~v~pssg~alAa~~~~~~~~~~~~~~~VV~i~tg~G~k~~~~~  327 (351)
T d1v7ca_         248 SWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFKLLREGRLEPESTVVLTLTGHGLKDPATA  327 (351)
T ss_dssp             THHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHTCCCBCHHHHHHHHHHHHHHHTTCSCSSEEEEEEECBBGGGCGGGG
T ss_pred             ccchhhhhhhccCcEEEEEchHHHHHHHHHHHHHcCcEECHHHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCcccCHHHH
Confidence            11111122344567788999999999999999999999999999999999999886  4678899999999999887765


Q ss_pred             c
Q psy14801        324 I  324 (404)
Q Consensus       324 ~  324 (404)
                      .
T Consensus       328 ~  328 (351)
T d1v7ca_         328 E  328 (351)
T ss_dssp             G
T ss_pred             H
Confidence            3

>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.1e-42  Score=346.26  Aligned_cols=307  Identities=18%  Similarity=0.176  Sum_probs=232.2

Q ss_pred             cccCCCCCCC----------cCCCCCCCCeeecCCCCCC-CCC-eEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCC-C
Q psy14801          7 YSNSARNSPF----------TPTVPGKVPLLPQSKQGSI-LLP-TTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLK-P   73 (404)
Q Consensus         7 ~~~~~~~~~~----------~~~~~g~TPl~~~~~l~~~-~g~-~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~-~   73 (404)
                      .+..||++.|          +++++|+|||+++++|+++ +|. +||+|+|++|||||||||++.+++..+.+.+..+ +
T Consensus        95 ~~g~wr~~~~~lp~~~~~~~v~lgeG~TPLv~~~~L~~~~lG~~~ly~K~E~~nPTGSfKDRga~~~i~~a~~~~~~~~~  174 (477)
T d1e5xa_          95 GSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRP  174 (477)
T ss_dssp             TSTTGGGGGGTCTTCCGGGCCCCCCCCCCEEECHHHHHHHHCCSSEEEEETTSSTTSBTTHHHHHHHHHHHHHHHHTTCC
T ss_pred             cCCceeehhhcCCCCCCCCccccCCCCCceEEchhhhHhhCCCceEEEEECCCCCCcccHHHHHHHHHHHHHHhccccCC
Confidence            3567887664          3588999999999999875 564 8999999999999999999999999887654433 3


Q ss_pred             CCEEEecCCChHHHHHHHHHHHcCCeEEEEecC-CCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCc
Q psy14801         74 GYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPM-KMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNA  152 (404)
Q Consensus        74 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~-~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~  152 (404)
                      ..+|+++||||||.|+|++|+++|++|+||||. ..+..|+.+++.+||+|+.+++  +|+   ++.+.+++++++.  .
T Consensus       175 ~~~vv~aSsGNtg~AlAa~aa~~Gi~~~I~~P~~~~s~~k~~~~~~~GA~V~~v~g--~~d---da~~~~~e~a~~~--~  247 (477)
T d1e5xa_         175 VVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDT--DFD---GCMKLIREITAEL--P  247 (477)
T ss_dssp             CCEEEECCCSHHHHHHHHHHHHHTCCEEEEEEGGGCCHHHHHHHHHTTCEEEEEES--CHH---HHHHHHHHHHHHS--C
T ss_pred             cceEEeecCchHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHhcCcccccccc--Cch---hhHHHhhhhcccc--c
Confidence            357999999999999999999999999999998 4788899999999999999987  454   4466688888764  4


Q ss_pred             EeecCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhC------CCcEEEEEcCCCCccccc
Q psy14801        153 VVLDQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKC------PSCKLVGADPFGSILAQP  225 (404)
Q Consensus       153 ~~~~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~------~~~~vi~V~p~~~~~~~~  225 (404)
                      +|..++.||. .+.|+.++++||++|+.+ .||.+++++|+|++++|++.+++...      +--++++|++.++.....
T Consensus       248 ~~~~~~~N~~-~~~g~~t~~~Ei~~ql~~~~pd~v~vp~G~gg~~~g~~~g~~~l~~~G~~~~~P~~~~v~a~~~~~~~~  326 (477)
T d1e5xa_         248 IYLANSLNSL-RLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQELGLVDRIPRMVCAQAANANPLYL  326 (477)
T ss_dssp             EEEGGGSHHH-HHHHHTHHHHHHHHHTTSCCCSEEEEECSSTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEETTSSTHHH
T ss_pred             eecccccccc-cchhhhHHHHHHHHhhccccceeeeecccCCcchhhHHHHHHHHhhcCccccCceEEEEeccchhhHHH
Confidence            6667788886 467889999999999985 49999999999999999999987631      123899999998753221


Q ss_pred             C-CCC--CCCCCCCccccccCC--CCccc-cccc--CccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHH
Q psy14801        226 Q-SLN--DVPENQISYNEVEGI--GYSFA-ATTL--DRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQ  297 (404)
Q Consensus       226 ~-~~~--~~~~~~~~~~~~~~i--~~~~~-~~~~--~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~  297 (404)
                      . ..+  .........+...++  +.... ...+  .....+.++.|+|.|+.++++ +++++|++++|+||.+++|+.+
T Consensus       327 ~~~~g~~~~~~~~~~~T~a~~i~i~~p~~~~~~l~~~~~~~g~~~~VsDeei~~a~~-l~~~eGi~vePssA~alAal~k  405 (477)
T d1e5xa_         327 HYKSGWKDFKPMTASTTFASAIQIGDPVSIDRAVYALKKCNGIVEEATEEELMDAMA-QADSTGMFICPHTGVALTALFK  405 (477)
T ss_dssp             HHHTTTTTCCC----------------CCCHHHHHHHHHTTCEEEEECHHHHHHHHH-HHHHTTCCCCHHHHHHHHHHHH
T ss_pred             HHHcCCCcccccccccccccccccccccchHHHHHHHhhcCceEEecCHHHHHHHHH-HHHHCCcEEChHHHHHHHHHHH
Confidence            1 111  100011111222222  11111 1111  122335678899999999887 4678999999999999999999


Q ss_pred             HHHh--cCCCCeEEEEecCCCCCcccc
Q psy14801        298 AAKS--LRPDQRCVVILADGVRNYLTK  322 (404)
Q Consensus       298 ~lk~--~~~~~~vv~v~~~~~~~~~~~  322 (404)
                      +.++  ..++.+||++.|+++.||.+.
T Consensus       406 l~~~g~i~~~~~VVvl~Tg~glKf~~~  432 (477)
T d1e5xa_         406 LRNQGVIAPTDRTVVVSTAHGLKFTQS  432 (477)
T ss_dssp             HHHTTSSCTTCCEEEEECBCGGGGHHH
T ss_pred             HHHhCCCCCCCcEEEEeCcCcccCHHH
Confidence            8876  568899999999999888543

>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=3.8e-42  Score=334.66  Aligned_cols=299  Identities=21%  Similarity=0.196  Sum_probs=219.9

Q ss_pred             CCCC-CCCeeecCCCCCCC-CCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHc
Q psy14801         19 TVPG-KVPLLPQSKQGSIL-LPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIK   96 (404)
Q Consensus        19 ~~~g-~TPl~~~~~l~~~~-g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~   96 (404)
                      ..+| +|||+++++|++.+ +++||+|+|++|||||||||++.+++..|.+.|..   +.|+++|+||||.++|++|+++
T Consensus        45 ~~~~rpTPLi~~~~Ls~~lgg~~Iy~K~E~lnptGS~KdR~a~~~i~~a~~~G~~---~~v~~~s~Gn~g~a~A~aaa~~  121 (386)
T d1v8za1          45 TWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKT---RLIAETGAGQHGVATAMAGALL  121 (386)
T ss_dssp             HTTCCSCCEEECHHHHHHHTSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCC---EEEEEESSSHHHHHHHHHHHHT
T ss_pred             hcCCCCCcceEhHhhHHhcCCCeEEEEeccCCCCCCccchHHHHHHHHHhhcCCc---eeEeecccchHHHHHHHHHHHc
Confidence            3466 69999999999876 57999999999999999999999999999999973   4678889999999999999999


Q ss_pred             CCeEEEEecC---CCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHH-HHHHhCCCcEee-----cCCCCCCChhhH
Q psy14801         97 GYKMVVVMPM---KMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAH-RIASQMKNAVVL-----DQFRNPNNPLSH  167 (404)
Q Consensus        97 G~~~~iv~p~---~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~-~l~~~~~~~~~~-----~e~~np~~si~g  167 (404)
                      |++|+||||.   ..+..|+.+++.+||+|+.++..  .....+....+. +.........+.     .++.+|.+...+
T Consensus       122 G~~~~i~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~~--~~~~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (386)
T d1v8za1         122 GMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSG--SRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDF  199 (386)
T ss_dssp             TCEEEEEEEHHHHTTCHHHHHHHHHTTCEEEEECST--TSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHH
T ss_pred             CCcccccccchhhhhhHHHHHHHHhcCCeEEEecCC--cchHHHHHHHHHHHHHhhhhhhhhccccccCccccchhhhcc
Confidence            9999999995   45568999999999999999862  233334443343 333333233332     233444444567


Q ss_pred             HhhHHHHHHHHhC----CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCC-------------
Q psy14801        168 YETTAEEILRDTG----GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLND-------------  230 (404)
Q Consensus       168 ~~~~a~ei~~q~~----~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~-------------  230 (404)
                      +.+++.||.+|+.    +.||.+|+++|+|++++|+..+++. .+.+++|+|+|.++..........             
T Consensus       200 ~~~~~~Ei~~q~~~~~g~~pd~vv~~vGgG~~~~g~~~~~~~-~~~v~iigvep~g~~~~~~~~~~~~~~g~~~~~~~~~  278 (386)
T d1v8za1         200 QSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVN-DKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGML  278 (386)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTT-CTTSEEEEEEEEETBGGGTBSCCHHHHCEEEEETTEE
T ss_pred             chhhhhhHHHHHHHhcCCCCCEEEECCCChHHHHHHHHHhhh-ccCceEEEEecCcccccccccccccccCccccccchh
Confidence            8899999988764    4599999999999999998776544 688999999998764322110000             


Q ss_pred             -------CCCCCCccccccCCCCccc---ccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHH
Q psy14801        231 -------VPENQISYNEVEGIGYSFA---ATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAK  300 (404)
Q Consensus       231 -------~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk  300 (404)
                             ............++.....   ...+.....+.++.|+|.|++++++.|++.+||+++|+||++++++.++.+
T Consensus       279 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~VtD~E~~~a~~~La~~EGI~~~~~sa~alA~a~kla~  358 (386)
T d1v8za1         279 SYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAK  358 (386)
T ss_dssp             EEECBCTTSCBCCCCCSSTTSCCSBCCHHHHHHHHTTSEEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHH
T ss_pred             heeccCCCCcccccccccccccccccchHHHHHHhcCceEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHHHHH
Confidence                   0000000000111111000   011112233467889999999999999999999999999999999999999


Q ss_pred             hcCCCCeEEEEecCCCCCccccc
Q psy14801        301 SLRPDQRCVVILADGVRNYLTKF  323 (404)
Q Consensus       301 ~~~~~~~vv~v~~~~~~~~~~~~  323 (404)
                      +.+++.+||++.||.+.+++++.
T Consensus       359 ~~~~~~~VV~iltG~G~kD~~~~  381 (386)
T d1v8za1         359 EMSRDEIIIVNLSGRGDKDLDIV  381 (386)
T ss_dssp             TSCTTCEEEEEECBBSGGGHHHH
T ss_pred             HcCCCCEEEEEeCCCccccHHHH
Confidence            99999999999999888877643

>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.1e-40  Score=322.94  Aligned_cols=298  Identities=18%  Similarity=0.167  Sum_probs=214.2

Q ss_pred             CCCCCC-CCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHc
Q psy14801         18 PTVPGK-VPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIK   96 (404)
Q Consensus        18 ~~~~g~-TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~   96 (404)
                      +..+|+ |||+++++|++.+|++||+|+|++|||||||||++..++..+++.|..   ..|+++|+||||.++|++|+++
T Consensus        49 ~~~~grpTPL~~~~~Ls~~lg~~IylK~E~lnptGS~K~R~a~~~i~~A~~~G~~---~iv~easaGN~g~a~A~aaa~~  125 (390)
T d1qopb_          49 KNYAGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKS---EIIAETGAGQHGVASALASALL  125 (390)
T ss_dssp             HHTTCCSCCEEECHHHHTTSSEEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCC---EEEEEESSSHHHHHHHHHHHHH
T ss_pred             HhcCCCCchhhEhHhhhhhhCCEEEEEEecCCcccccchhHHHHHHHHHhhcCCc---eeeeehhHHHHHHHHHHHHHhc
Confidence            344555 999999999999999999999999999999999999999999999972   3567899999999999999999


Q ss_pred             CCeEEEEecCCCC---HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHH-HHHHHhCCCcEeec-CCCCCCC----hhhH
Q psy14801         97 GYKMVVVMPMKMS---KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGA-HRIASQMKNAVVLD-QFRNPNN----PLSH  167 (404)
Q Consensus        97 G~~~~iv~p~~~~---~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a-~~l~~~~~~~~~~~-e~~np~~----si~g  167 (404)
                      |++|+||||...+   ..|+.+|+.|||+|+.++..  .....+....+ +.........++.. ...+|..    ...+
T Consensus       126 Gl~~~I~mp~~~~~~k~~~v~~m~~~GAeVv~v~~g--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (390)
T d1qopb_         126 GLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSG--SATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREF  203 (390)
T ss_dssp             TCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEEECST--TSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHT
T ss_pred             cCceEEeecccccccchHHHHHHHhcCceEEEecCC--chhhhHhHHHHHHHHhhhhhhhhhccccccccccccccccch
Confidence            9999999998544   67789999999999999862  23333333333 44444444455543 2233321    1246


Q ss_pred             HhhHHHHHHHHhC----CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCC--------C------
Q psy14801        168 YETTAEEILRDTG----GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSL--------N------  229 (404)
Q Consensus       168 ~~~~a~ei~~q~~----~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~--------~------  229 (404)
                      +..++.|+.+|..    +.||.+|+++|+|++++|+..+++. .+..++++++|...........        +      
T Consensus       204 ~~~iG~e~~~q~~~~~g~~pD~vv~~vGgGs~~~G~~~~f~~-~~~~~~ig~ep~~~g~~~~~~~a~~~~g~~g~~~~~~  282 (390)
T d1qopb_         204 QRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFIN-DTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMK  282 (390)
T ss_dssp             TTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTT-CTTSEEEEEEEEETBGGGTBSCCHHHHSEEEEETEEE
T ss_pred             hhhhcchhHHHHHHHcCCccceEEecccccchhhheeccccc-ccceeEeccccccccccccccccccccCccccccccc
Confidence            7788999877753    4599999999999999999988865 4668999999876432110000        0      


Q ss_pred             ------CCCCCCCccccccCCCCcc---cccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHH
Q psy14801        230 ------DVPENQISYNEVEGIGYSF---AATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAK  300 (404)
Q Consensus       230 ------~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk  300 (404)
                            .............++...-   ....+.....+.++.|+|.|+.++++.|++.+||+++++++++++++.+.++
T Consensus       283 ~~~~~~~~g~~~~~~s~a~gl~~~~~~~~~~~l~~~g~~~~~~vtD~Ea~~a~~~La~~EGI~~a~Esa~Ava~Ai~~a~  362 (390)
T d1qopb_         283 APMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMR  362 (390)
T ss_dssp             EEECBCTTSCBCCCCCSSGGGCCSSCCHHHHHHHHTTSSEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCccccccccccccccccchhHHHHHHhcCceEEEEECHHHHHHHHHHHHHhcCCeecCchHHHHHHHHHHhh
Confidence                  0000000011111111100   0111222344678899999999999999999999999999999999999888


Q ss_pred             hcC-CCCeEEEEecCCCCCccc
Q psy14801        301 SLR-PDQRCVVILADGVRNYLT  321 (404)
Q Consensus       301 ~~~-~~~~vv~v~~~~~~~~~~  321 (404)
                      +.. ++..||++.||.+.+.+.
T Consensus       363 ~~~~~~~~VVv~lsG~G~kD~~  384 (390)
T d1qopb_         363 EQPEKEQLLVVNLSGRGDKDIF  384 (390)
T ss_dssp             HSTTSCEEEEEEECBBCGGGHH
T ss_pred             hcCCCCCEEEEEECCCCccCHH
Confidence            764 566677778887765443

>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=7.5e-39  Score=304.02  Aligned_cols=294  Identities=16%  Similarity=0.109  Sum_probs=216.4

Q ss_pred             CCCcCCCCCCCCeeecCCCCCCCCCeEEEEeCCCC--CCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHH
Q psy14801         14 SPFTPTVPGKVPLLPQSKQGSILLPTTDAKCEFMN--PTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAM   91 (404)
Q Consensus        14 ~~~~~~~~g~TPl~~~~~l~~~~g~~l~~K~E~~~--ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~   91 (404)
                      .|++++..|+|||+++++|++.+|++||+|+|++|  ||||||||++.+++.+++++|..  ...++++|+||||.|+|+
T Consensus        12 ~p~i~l~~~~TPL~~~~~L~~~~G~~v~iK~Ed~~~~~tgS~K~R~~~~~i~~a~~~g~~--~~~~~~~s~gN~g~a~A~   89 (325)
T d1j0aa_          12 FPRVELIPWETPIQYLPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGAD--VVITVGAVHSNHAFVTGL   89 (325)
T ss_dssp             CCCCCCCCSCCCEEECHHHHHHHTSEEEEEEGGGSCSTTCSTHHHHHHHHHHHHHHTTCS--EEEEECCTTCHHHHHHHH
T ss_pred             CCcccCCCCCCceeEHHHhHHHHCCEEEEEecCCCCCCcchhHHHHHHHHHHHHHHCCCC--eeEEEeeCcchHHHHHHH
Confidence            57889999999999999999989999999999877  99999999999999999998862  133456789999999999


Q ss_pred             HHHHcCCeEEEEecCCCCHHHHHHHHHcCC-EEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEee-cCCCCCCChhhHHh
Q psy14801         92 VAAIKGYKMVVVMPMKMSKEKVYTMKALGA-KIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVL-DQFRNPNNPLSHYE  169 (404)
Q Consensus        92 ~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga-~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~-~e~~np~~si~g~~  169 (404)
                      +|+.+|++|++|+|...+..+..++..+++ .+..++..............+..........++. .++.++. ...++.
T Consensus        90 ~a~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  168 (325)
T d1j0aa_          90 AAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMKYAEEIAEELKREGRKPYVIPPGGASPI-GTLGYV  168 (325)
T ss_dssp             HHHHTTCEEEEEEESCCCSCHHHHHHHHTTCEEEEESCCSTTTHHHHHHHHHHHHTTSSCCEEEECGGGCSHH-HHTHHH
T ss_pred             HHhhhcCceEEEeecccccchhhhhccccceeEEeccCcccccchHHHHHHHHHHHhhccCceeeecCCCccc-cccccc
Confidence            999999999999999887766666655443 4444444222222222222233333333334444 3444443 456778


Q ss_pred             hHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCCCccccccCCCCccc
Q psy14801        170 TTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQISYNEVEGIGYSFA  249 (404)
Q Consensus       170 ~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  249 (404)
                      .++.|+++|....||.+|+++|+|+++.|+..+++...+..++++|++.............     ..............
T Consensus       169 ~~~~e~~~~~~~~~d~vv~~~G~G~~~~gi~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  243 (325)
T d1j0aa_         169 RAVGEIATQSEVKFDSIVVAAGSGGTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTSKLDN-----LIKEAAELLGVKVE  243 (325)
T ss_dssp             HHHHHHHHHCCCCCSEEEEEESSSHHHHHHHHHHHHTTCCCEEEEEECSSCSSSHHHHHHH-----HHHHHHHHTTCCCC
T ss_pred             hhhcccccccccccceeecccccchhhhhHHHHHHhhCccccccccccccchhhhhhhhcc-----cccccccccCCCcc
Confidence            8999999999888999999999999999999999999999999999998764322110000     00000001111111


Q ss_pred             ccccCccccCcEEecChHHHHHHHHHHHHhcCcEecc-chhhHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14801        250 ATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGG-SSGTAMHVACQAAKSLRPDQRCVVILADG  315 (404)
Q Consensus       250 ~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~-~tg~tlag~~~~lk~~~~~~~vv~v~~~~  315 (404)
                      .........+..+.++|+|++++++.+++++||+++| +||.+++++.+++++...+.+||+|+|||
T Consensus       244 ~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGI~~eP~~s~~a~~~l~~~~~~~~~~~~vv~i~tGG  310 (325)
T d1j0aa_         244 VRPELYDYSFGEYGKITGEVAQIIRKVGTREGIILDPVYTGKAFYGLVDLARKGELGEKILFIHTGG  310 (325)
T ss_dssp             SCCEEEECSTTSTTCCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCSCSEEEEEECCC
T ss_pred             cchhhhhceecceeechHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHHHHHcCCCCCeEEEEECCc
Confidence            1111223445677899999999999999999999999 69999999999999877889999999996

>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Pseudomonas sp., strain ACP [TaxId: 306]

Probab=100.00  E-value=2.5e-36  Score=286.31  Aligned_cols=299  Identities=18%  Similarity=0.145  Sum_probs=209.3

Q ss_pred             CCCcCCCCCCCCeeecCCCCCCCC--CeEEEEeCCCCCCCCh---hhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHH
Q psy14801         14 SPFTPTVPGKVPLLPQSKQGSILL--PTTDAKCEFMNPTGSL---KDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIG   88 (404)
Q Consensus        14 ~~~~~~~~g~TPl~~~~~l~~~~g--~~l~~K~E~~~ptGS~---K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a   88 (404)
                      .|++++.+|+|||+++++|++.+|  ++||+|+|++||||||   |||++.+++.+++++|..  ...++++|+||||.|
T Consensus         6 ~~r~~l~~g~TPL~~~~~L~~~lg~~~~i~~K~E~~~ptgS~~gnK~R~~~~~i~~a~~~g~~--~v~~~~~s~gN~g~A   83 (338)
T d1tyza_           6 FPRYPLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCD--TLVSIGGIQSNQTRQ   83 (338)
T ss_dssp             SCCCCCSSSSCCEEECHHHHHHTTSSSEEEEEEGGGSCSSTTCCHHHHHHHHHHHHHHHTTCC--EEEEEEETTCHHHHH
T ss_pred             CCccccCCCCCceeEhHHHHHHHCCCCEEEEEECCCCCCcccccCHHHHHHHHHHHHHHCCCC--eEEEEccCCchHHHH
Confidence            467899999999999999998776  5899999999999999   999999999999999861  123456799999999


Q ss_pred             HHHHHHHcCCeEEEEecCCCCH--------HHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeecCCCC
Q psy14801         89 LAMVAAIKGYKMVVVMPMKMSK--------EKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLDQFRN  160 (404)
Q Consensus        89 ~A~~a~~~G~~~~iv~p~~~~~--------~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~e~~n  160 (404)
                      +|++|+.+|++|+||||...+.        .+.+.+..+|+.++.++...+..........+..........++..++.+
T Consensus        84 ~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (338)
T d1tyza_          84 VAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCS  163 (338)
T ss_dssp             HHHHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEECCCC-------CHHHHHHHHHHHTTCCEEEECGGGT
T ss_pred             HHHHHhhccCcEEEEECCCcchhhhhhhhccccceeeeeccccccccCCcchhHHHHHHHHHhhhhhcccceeeecccCc
Confidence            9999999999999999986543        45667889999999998632211112222223333333334444433333


Q ss_pred             CCChhhHHhhHHHHHH-----HHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCCCCC
Q psy14801        161 PNNPLSHYETTAEEIL-----RDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVPENQ  235 (404)
Q Consensus       161 p~~si~g~~~~a~ei~-----~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~~~~  235 (404)
                      +. ...+....+.+..     .+....||.+|+++|+|+++.|++.+++...+..+++++++..................
T Consensus       164 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~iv~~~G~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (338)
T d1tyza_         164 DH-PLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKPAQTREQITRIARQT  242 (338)
T ss_dssp             SS-TTTTTHHHHHHHHHHHHHHHHTSCCSEEEEEESSSHHHHHHHHHHHTTTCGGGEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             cC-ccccccccchHHHHHHHHHhcCCCccEEEEeecChhHHHHHHHHHHHHhhhhcccceeeccchhhhccccccccccc
Confidence            21 2233344443333     33345699999999999999999999999998889999998876432111000000000


Q ss_pred             CccccccCCCCcccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccc-hhhHHHHHHHHHHh--cCCCCeEEEEe
Q psy14801        236 ISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGS-SGTAMHVACQAAKS--LRPDQRCVVIL  312 (404)
Q Consensus       236 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~-tg~tlag~~~~lk~--~~~~~~vv~v~  312 (404)
                      .. ....................+..+.++|+|++++++.+++++|++++|. ||.+++|+.+++++  ..++.+||+++
T Consensus       243 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~d~ei~~a~~~l~~~eGI~~eP~~s~~a~a~l~~~~~~~~~~~g~~Vv~i~  321 (338)
T d1tyza_         243 AE-KVGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLYAH  321 (338)
T ss_dssp             HH-HHTCSSCCCGGGCEEECTTSCSBTTBCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCSCTTCEEEEEE
T ss_pred             cc-cccccCcccchhhhhhhhcccceEEEChHHHHHHHHHHHHHhCCcCChHHHHHHHHHHHHHHhcCCCCCcCeEEEEE
Confidence            00 0000001111122223445677889999999999999999999999995 89999999998875  46889999999


Q ss_pred             cCCC
Q psy14801        313 ADGV  316 (404)
Q Consensus       313 ~~~~  316 (404)
                      |||-
T Consensus       322 TGG~  325 (338)
T d1tyza_         322 LGGV  325 (338)
T ss_dssp             CCCG
T ss_pred             CCch
Confidence            9973

>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Yeast (Hansenula saturnus) [TaxId: 4906]

Probab=100.00  E-value=6.2e-36  Score=284.36  Aligned_cols=298  Identities=16%  Similarity=0.134  Sum_probs=215.1

Q ss_pred             CCCcCCCCCCCCeeecCCCCCCCC--CeEEEEeCCCCCCCCh---hhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHH
Q psy14801         14 SPFTPTVPGKVPLLPQSKQGSILL--PTTDAKCEFMNPTGSL---KDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIG   88 (404)
Q Consensus        14 ~~~~~~~~g~TPl~~~~~l~~~~g--~~l~~K~E~~~ptGS~---K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a   88 (404)
                      .+.+.+.+|+|||+++++|++.+|  ++||+|+|++||+|||   |+|++.+++.+++++|..  +..++++|+||||.|
T Consensus         6 ~~~~~l~~~~TPl~~~~~L~~~lg~~~~i~~K~E~~~p~GSf~gnK~R~~~~~i~~a~~~g~~--~i~~~~as~gN~g~a   83 (341)
T d1f2da_           6 FAKYPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYT--HLVSIGGRQSNQTRM   83 (341)
T ss_dssp             SCCCCCSSSSCCEEECHHHHHHTTTCSEEEEEEGGGSCSSTTCCHHHHHHTTTHHHHHHSCCS--EEEEEEETTCHHHHH
T ss_pred             ccCccCCCCCCceeEHHHHHHHHCCCCEEEEEECCCCCCCccccChHHHHHHHHHHHHHCCCC--EEEEEccCcchHHHH
Confidence            466789999999999999999887  4899999999999999   999999999999998861  123467899999999


Q ss_pred             HHHHHHHcCCeEEEEecCCCCHH-----------HHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEeec-
Q psy14801         89 LAMVAAIKGYKMVVVMPMKMSKE-----------KVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVVLD-  156 (404)
Q Consensus        89 ~A~~a~~~G~~~~iv~p~~~~~~-----------k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~-  156 (404)
                      +|++|+.+|++|+||||...+..           +...+..+|+++..++...+.....................++.. 
T Consensus        84 ~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (341)
T d1f2da_          84 VAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPA  163 (341)
T ss_dssp             HHHHHHHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECCCCCCSSCCHHHHHHHHHHHHTTCCEEEECG
T ss_pred             HHHHHHHhcCceEEEccCCCCHHHHHHHHHhhccceechhhccccccccCCchhhHHHHHHHHHHHHHHhhccCccccCC
Confidence            99999999999999999877654           456678899999999874322222222223333333333333332 


Q ss_pred             -CCCCCCChhhHHhhHHHHHHHHh---CCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCC
Q psy14801        157 -QFRNPNNPLSHYETTAEEILRDT---GGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVP  232 (404)
Q Consensus       157 -e~~np~~si~g~~~~a~ei~~q~---~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~  232 (404)
                       ...+|. ...++.+.+.++.++.   ...|+.+|+++|+|++++|++.+++...+..+++++.+.............. 
T Consensus       164 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  241 (341)
T d1f2da_         164 GCSEHKY-GGLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQTLRI-  241 (341)
T ss_dssp             GGTTSTT-TTTHHHHHHHHHHHHHHHHTCCCSEEEEEESSSHHHHHHHHHHGGGTCGGGEEEEECSSCHHHHHHHHHHH-
T ss_pred             ccccccc-chhhehhhhHHHHHHHhhccCCceEEEEecccccchhhHHHHHHHhcccccccccccccchhhhhhhhhcc-
Confidence             223343 3455666666666554   4569999999999999999999999998888999999887632111000000 


Q ss_pred             CCCCccccccCCCCcccccccCccccCcEEecChHHHHHHHHHHHHhcCcEeccc-hhhHHHHHHHHHHh--cCCCCeEE
Q psy14801        233 ENQISYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGS-SGTAMHVACQAAKS--LRPDQRCV  309 (404)
Q Consensus       233 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~-tg~tlag~~~~lk~--~~~~~~vv  309 (404)
                        ........................+..+.++|.|+.++++++++++||+++|. ||.+++|+.+++++  +.++.+||
T Consensus       242 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGI~veP~ys~~a~agl~~l~~~~~i~~~~~Vv  319 (341)
T d1f2da_         242 --ANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLTDPVYEGKSMQGLIALIKEDYFKPGANVL  319 (341)
T ss_dssp             --HHHHHHHHTCCCCCSCCCEECTTSTTBTTBCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCSCTTCEEE
T ss_pred             --ccccccccccCCCccccccccccceeEEEEChHHHHHHHHHHHHHhCcccChhhhHHHHHHHHHHHHcCCCCCcCeEE
Confidence              00000000001111111222345566788999999999999999999999997 89999999999875  56889999


Q ss_pred             EEecCCCC
Q psy14801        310 VILADGVR  317 (404)
Q Consensus       310 ~v~~~~~~  317 (404)
                      +|+|||..
T Consensus       320 ~i~TGG~~  327 (341)
T d1f2da_         320 YVHLGGAP  327 (341)
T ss_dssp             EEECCCGG
T ss_pred             EEECCCcc
Confidence            99999743

>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=6e-24  Score=204.74  Aligned_cols=284  Identities=14%  Similarity=0.080  Sum_probs=191.3

Q ss_pred             CCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHc-CCeEE
Q psy14801         23 KVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIK-GYKMV  101 (404)
Q Consensus        23 ~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~-G~~~~  101 (404)
                      ..|+.++..       ++|+...+++||+|||||++..+...+...+. ....+|+++||||+|.|++.+.+.. +++++
T Consensus        83 ~~p~~~~~~-------~~~~lELfhGPT~aFKD~a~~~~~~~~~~~~~-~~~~~Il~ATSGDTG~Aa~~a~~~~~~i~~~  154 (428)
T d1vb3a1          83 PAPVANVES-------DVGCLELFHGPTLAFKDFGGRFMAQMLTHIAG-DKPVTILTATSGDTGAAVAHAFYGLPNVKVV  154 (428)
T ss_dssp             CCCEEEEET-------TEEEEECCCSTTSBTHHHHHHHHHHHHHHHTT-TCCEEEEEECSSSHHHHHHHHTTTCTTEEEE
T ss_pred             CccceeccC-------CceeeeeccCCCcccccchhhHHHHHHhhhcc-cccceeeecCCCCcchhHHHHHhCccccceE
Confidence            467776653       78999999999999999999865443332222 1226899999999998888766655 68999


Q ss_pred             EEecC-CCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCC----CcEeecCCCCCCChhhHHhhHHHHHH
Q psy14801        102 VVMPM-KMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMK----NAVVLDQFRNPNNPLSHYETTAEEIL  176 (404)
Q Consensus       102 iv~p~-~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~----~~~~~~e~~np~~si~g~~~~a~ei~  176 (404)
                      |+.|. .+++.++.+|..+|++|+.+..+++||+++..+   +++..+..    ..+......|+. .+.++.+..+++.
T Consensus       155 vl~P~g~vS~~Q~~Qmtt~g~nv~vi~V~G~fDDcq~lv---k~~f~d~~~~~~~~l~s~NSIN~~-Rl~~Q~vyyf~a~  230 (428)
T d1vb3a1         155 ILYPRGKISPLQEKLFCTLGGNIETVAIDGDFDACQALV---KQAFDDEELKVALGLNSANSINIS-RLLAQICYYFEAV  230 (428)
T ss_dssp             EEEETTCSCHHHHHHHHSCCTTEEEEEEESCHHHHHHHH---HHGGGCHHHHHHHTEECCSTTSHH-HHHHTTHHHHHHH
T ss_pred             EEecCCCCcHHHHHHHhhccCCceEEecCCChhHHHHHH---HHHhhhhhhhhcCCeeeecccChh-HHhhhHHHHHHHH
Confidence            99997 589999999999999876666556888876654   44432210    112222233443 3567788899999


Q ss_pred             HHhCC---CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCCC--CCCCccccccCCCCccccc
Q psy14801        177 RDTGG---KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDVP--ENQISYNEVEGIGYSFAAT  251 (404)
Q Consensus       177 ~q~~~---~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~  251 (404)
                      .|+..   .|..++||+|++|+++|..+|.+...|--++++....+.........+...  ....+......|+.+....
T Consensus       231 ~ql~~~~~~~~~~~VPtGNfGni~Ag~~Ak~mGLPi~~~i~AtN~Ndil~~f~~tG~y~~~~~~~TlSpAMDI~~pSNfE  310 (428)
T d1vb3a1         231 AQLPQETRNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVNDTVPRFLHDGQWSPKATQATLSNAMDVSQPNNWP  310 (428)
T ss_dssp             TTSCTTTTTSEEEEEECSSCHHHHHHHHHHHTTCCCSEEEEEECSCCHHHHHHHHSCCCCCCCCCCSSGGGCCSSCTTHH
T ss_pred             HHhccccCCceEEeccHHHHHHHHHHHHhhhcCCceeeeecccccCccchhhhhCCceecccccccCchHhhhcccCCHH
Confidence            99864   377899999999999999999998888778888888776432111111110  1111112223333322111


Q ss_pred             cc----C---ccccCcEEecChHHHHHHHHHHHHhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCccc
Q psy14801        252 TL----D---RNVIDQWGKCGDKDTFLMARRLIKSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLT  321 (404)
Q Consensus       252 ~~----~---~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~  321 (404)
                      ++    +   .........+.|.|....+...+++.|++++|+|+.+++++.+   ..+++..+|++.|.++.+|.+
T Consensus       311 Rl~~l~~~~~~~l~~~~~~~~dde~~~~i~~~~~~~gyi~DPHTAvg~~a~~~---~~~~~~~~V~LaTAHP~KF~d  384 (428)
T d1vb3a1         311 RVEELFRRKIWQLKELGYAAVDDETTQQTMRELKELGYTSEPHAAVAYRALRD---QLNPGEYGLFLGTAHPAKFKE  384 (428)
T ss_dssp             HHHHHHHHTTCCGGGSEEEECCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHT---TCCTTCEEEEEECBCGGGGHH
T ss_pred             HHHHHHHhhhhhhcccceeeccHHHHHHHHHHHHHcCceeCCcHHHHHHHHHH---hhCCCCCEEEEECcCchhCHH
Confidence            11    0   1112234456677776777777788999999999999888643   346778899999999988754

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.90  E-value=4.3e-25  Score=210.90  Aligned_cols=229  Identities=14%  Similarity=0.095  Sum_probs=149.1

Q ss_pred             CcEee-cCCCCCCC-hhhHHhhHHHHHHHHhCCC--cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC
Q psy14801        151 NAVVL-DQFRNPNN-PLSHYETTAEEILRDTGGK--VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ  226 (404)
Q Consensus       151 ~~~~~-~e~~np~~-si~g~~~~a~ei~~q~~~~--~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~  226 (404)
                      ..+|+ .|+.||.+ |+|  ||.|..|+.++.++  ++.+||+++|||  +|+++|+.++..|+++++|+|.+.+.....
T Consensus       109 ~~IylKlE~~NPtGgSfK--dR~A~~~i~~A~~~~~~g~~VVeaSSGN--~GiAlA~~aa~lGik~~Iv~P~~~~~~K~~  184 (382)
T d1wkva1         109 VRVWLKLEWYNPFSLSVK--DRPAVEIISRLSRRVEKGSLVADATSSN--FGVALSAVARLYGYRARVYLPGAAEEFGKL  184 (382)
T ss_dssp             EEEEEEEGGGSTTTSBTT--HHHHHHHHHHHTTTSCTTCEEEEECCHH--HHHHHHHHHHHTTCEEEEEEETTSCHHHHH
T ss_pred             CEEEEEecCCCCCCCccH--HHHHHHHHHHHHhccCCCCEEEEeCCcH--HHHHHHHHHHHcCCCEEEEeeccccccccc
Confidence            35777 89999975 999  99999999998753  677899999999  999999999999999999999987532211


Q ss_pred             CCCCCCCCCC-------ccccccCCCCcccccccCccccCcEEecChHHHH--HHHHHHHHhc--------CcEeccchh
Q psy14801        227 SLNDVPENQI-------SYNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTF--LMARRLIKSE--------GLLVGGSSG  289 (404)
Q Consensus       227 ~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~--~~~~~l~~~~--------gi~~~~~tg  289 (404)
                      .+...++...       ......... . ........+.+++.+..+.+.+  .++.||++|.        .++++.|||
T Consensus       185 ~ira~GAeVi~~~~~~~~~~~~~~a~-~-~a~~~~~~~~~q~~N~~~~~~h~~ttg~EI~eQl~~~~~~~d~vv~~vGtG  262 (382)
T d1wkva1         185 LPRLLGAQVIVDPEAPSTVHLLPRVM-K-DSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTS  262 (382)
T ss_dssp             HHHHTTCEEEEETTCSSSGGGHHHHH-H-HHHHHCCEECCTTTCHHHHHHHHHTHHHHHHHHHHHTTCCEEEEEECCSSS
T ss_pred             cccccCcceeecCcchhhHHHHHHHh-h-hccccCccccccccccceeeehhhcchHHHHHHhhcCCCceeEEEEecccc
Confidence            1111111100       000000000 0 0000011223343333333332  2345555442        367788999


Q ss_pred             hHHHHHHHHHHhcCCCCeEEEEecCCCCCccc-ccc--chhHH--hh---cCccCcHHHHHH-------------hccch
Q psy14801        290 TAMHVACQAAKSLRPDQRCVVILADGVRNYLT-KFI--SDEWM--IE---KGFLDEAEELEE-------------MIHSG  348 (404)
Q Consensus       290 ~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~-~~~--~~~~~--~~---~~~~~~~~~~~~-------------g~SsG  348 (404)
                      ++++|+.+++++.+|+.+++.|+|.++..... ..+  +..|.  .+   ....++|++++.             +.|||
T Consensus       263 G~~~Gi~~~lk~~~p~vkiigVep~~~~~i~g~~~i~~g~~~~~~~d~~~~i~~Vsd~Eai~a~r~La~~EGI~vgpSSG  342 (382)
T d1wkva1         263 GHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIRRVETGMLWINMLDISYTLAEVTLEEAMEAVVEVARSDGLVIGPSGG  342 (382)
T ss_dssp             HHHHHHHHHHHHHCTTCEEEEEEECTTCCCTTCCCGGGCCSHHHHSCCCCEEEEECHHHHHHHHHHHHHHHSCCBCHHHH
T ss_pred             cccccceeehhhhCCccceeEeccccccccccccccccCccCccccccceEEEEECHHHHHHHHHHHHHHcCCEEcHHHH
Confidence            99999999999999999999999866532210 001  11111  11   223356665544             34999


Q ss_pred             hHHHHHHHHHHhcC-CCCeEEEEEcCCCcchhhccCCH
Q psy14801        349 TAMHVACQAAKSLR-PDQRCVVILADGVRNYLTKFISD  385 (404)
Q Consensus       349 a~~~~a~~~~~~~~-~~~~iv~i~~D~g~rYl~~~~~~  385 (404)
                      ++++++++++++.. +++++|+|+||+|+|||||+||.
T Consensus       343 aavaaa~k~a~~~~~~~~~vVvIlcD~G~rYlstiyN~  380 (382)
T d1wkva1         343 AAVKALAKKAAEGDLEPGDYVVVVPDTGFKYLSLVQNA  380 (382)
T ss_dssp             HHHHHHHHHHHTTCSCSEEEEEEECBBGGGCHHHHHHH
T ss_pred             HHHHHHHHHHhhccCCCCCEEEEECCCCccchHhhccC
Confidence            99999999988732 45789999999999999999984

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=99.87  E-value=3.5e-23  Score=192.63  Aligned_cols=233  Identities=14%  Similarity=0.156  Sum_probs=153.1

Q ss_pred             HHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801        146 ASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS  220 (404)
Q Consensus       146 ~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~  220 (404)
                      .++.+..+|+ +|+.||++|.|  +|.|..++.++.+    +++.+|++++|||  +|+++|+.++..|+++++++|+..
T Consensus        19 ~~~~g~~iy~K~E~~~ptGSfK--~Rga~~~i~~a~~~g~~~~~~~vv~aSsGN--~g~a~A~~a~~~G~~~~i~~p~~~   94 (292)
T d2bhsa1          19 GPDNGSEVWLKLEGNNPAGSVK--DRAALSMIVEAEKRGEIKPGDVLIEATSGN--TGIALAMIAALKGYRMKLLMPDNM   94 (292)
T ss_dssp             SCCSSCEEEEEEGGGSTTSBTH--HHHHHHHHHHHHHTTSCCTTSEEEEECCSH--HHHHHHHHHHHHTCEEEEEEESCC
T ss_pred             ChhhCCEEEEEeCCCCCCCCcH--HHHHHHHHHHHHHhCCcCCCceeeeecccc--hhHHHHHHHHhcCcceEeeeccCc
Confidence            3344455777 89999999999  9999999887642    3678999999999  999999999999999999999987


Q ss_pred             cccccCCCCCCCCCCC---ccccccC-CCC-cccccccCccccCcEEecChHHHH-H-HHHHHHHhcC-----cEeccch
Q psy14801        221 ILAQPQSLNDVPENQI---SYNEVEG-IGY-SFAATTLDRNVIDQWGKCGDKDTF-L-MARRLIKSEG-----LLVGGSS  288 (404)
Q Consensus       221 ~~~~~~~~~~~~~~~~---~~~~~~~-i~~-~~~~~~~~~~~~~~~~~v~d~e~~-~-~~~~l~~~~g-----i~~~~~t  288 (404)
                      +......+........   ....... ... ..........+.+++.+..+.+.. . .+.||+++.+     +++..|+
T Consensus        95 ~~~k~~~~~~~GA~v~~v~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~Ei~~q~~~~~d~vv~~~G~  174 (292)
T d2bhsa1          95 SQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGT  174 (292)
T ss_dssp             CHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHTSSEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSS
T ss_pred             hhhhhHHHHHhCCCcceeecccchHHHHHHHhhccccccccccCCCchhcchhhHHHHHHHHhHHhcCCCCCcccccCCC
Confidence            5432211111111100   0000000 000 000000111222333333333332 2 3567777654     8888899


Q ss_pred             hhHHHHHHHHHHhcCCCCeEEEEecCCCCCcc---------ccccchhHHhhcCccCcHHHHHHh-------------cc
Q psy14801        289 GTAMHVACQAAKSLRPDQRCVVILADGVRNYL---------TKFISDEWMIEKGFLDEAEELEEM-------------IH  346 (404)
Q Consensus       289 g~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~g-------------~S  346 (404)
                      |++++|+.+++++..++.+|+.|+|.+.....         ...+.+....+....++|++++.+             .|
T Consensus       175 Gg~~~G~~~~~k~~~~~~~i~~Vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~ea~~a~~~L~~~eGi~vepS  254 (292)
T d2bhsa1         175 TGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVS  254 (292)
T ss_dssp             SHHHHHHHHHHHTSSSCCEEEEEEECTTCCCTTCCCCCTTTCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHH
T ss_pred             ccchhhhhhhhhhccCcceEEEeccccccccccccccccccccccccccccceEEEcCHHHHHHHHHHHHHHcCeEEeHH
Confidence            99999999999999999999999997643221         111111223334445666665553             39


Q ss_pred             chhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhc-cC
Q psy14801        347 SGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK-FI  383 (404)
Q Consensus       347 sGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~-~~  383 (404)
                      ||+++++++++++. .++++||+|+||+|+||||| +|
T Consensus       255 sgaalaa~~~~~~~-~~~~~VV~il~~~G~kYlst~~~  291 (292)
T d2bhsa1         255 SGGAVAGALRVAKA-NPDAVVVAIICDRGDRYLSTGVF  291 (292)
T ss_dssp             HHHHHHHHHHHHHT-CTTCEEEEEECBBSGGGGGGTCC
T ss_pred             HHHHHHHHHHHHHH-CcCCeEEEEECCCCccccccccc
Confidence            99999999999876 57899999999999999998 44

>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=1.2e-22  Score=189.78  Aligned_cols=230  Identities=15%  Similarity=0.159  Sum_probs=149.4

Q ss_pred             CCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC------cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCc
Q psy14801        149 MKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK------VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI  221 (404)
Q Consensus       149 ~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~------~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~  221 (404)
                      .+..+|+ +|+.||+||.|  +|.+..++.++.++      ....|+++++||  +|+++|+.++..+++++.|+|+..+
T Consensus        22 ~g~~i~~K~E~~~ptGSfK--~Rga~~~i~~a~~~g~~~~~~~~~vv~~SsGN--~g~a~A~~a~~~g~~~~iv~p~~~~   97 (302)
T d1ve1a1          22 DMAEVWVKLEGLNPGGSIK--DRPAWYMIKDAEERGILRPGSGQVIVEPTSGN--TGIGLAMIAASRGYRLILTMPAQMS   97 (302)
T ss_dssp             TSCEEEEEEGGGSTTSBTT--HHHHHHHHHHHHHTTSCCTTSCCEEEESCCSH--HHHHHHHHHHHHTCEEEEEEETTCC
T ss_pred             hCCEEEEEeCCCCcccCcH--HHHHHHHHHHHHHhCCCCCCCCcEEEEecCCc--chhhhhhhhhccCcceeEeeecccc
Confidence            3445666 89999999999  99999998876532      246899999999  9999999999999999999999875


Q ss_pred             ccccCCCCCCCCCC---CccccccC-CC-CcccccccCccccCcEEecChHHHH--HHHHHHHHhcC-----cEeccchh
Q psy14801        222 LAQPQSLNDVPENQ---ISYNEVEG-IG-YSFAATTLDRNVIDQWGKCGDKDTF--LMARRLIKSEG-----LLVGGSSG  289 (404)
Q Consensus       222 ~~~~~~~~~~~~~~---~~~~~~~~-i~-~~~~~~~~~~~~~~~~~~v~d~e~~--~~~~~l~~~~g-----i~~~~~tg  289 (404)
                      ......+.......   ........ .. ...........+++++.+..+.+..  ..+.||+++.+     +++..|+|
T Consensus        98 ~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~EI~~q~~~~~d~vv~~vG~G  177 (302)
T d1ve1a1          98 EERKRVLKAFGAELVLTDPERRMLAAREEALRLKEELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTG  177 (302)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHHTCBCCCTTTCHHHHHHHHHTHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             hheeehhhhhhhcchhcccccchHHHHHHhhhhhhccCccccccCccchhHHHHHHHHHHHHHHHcCCCCCeEEEeecCc
Confidence            32211110000000   00000000 00 0000000011222333232233332  23456665543     88888999


Q ss_pred             hHHHHHHHHHHhcCCCCeEEEEecCCCCCccc--------cc---------cchhHHhhcCccCcHHHHHHh--------
Q psy14801        290 TAMHVACQAAKSLRPDQRCVVILADGVRNYLT--------KF---------ISDEWMIEKGFLDEAEELEEM--------  344 (404)
Q Consensus       290 ~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~--------~~---------~~~~~~~~~~~~~~~~~~~~g--------  344 (404)
                      ++++|+.+++++..|+.+|+.|+|.+...+..        +.         +... ..+....++|++++.+        
T Consensus       178 g~~~Gi~~~~~~~~~~~~iigve~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~V~d~ea~~a~~~l~~~e  256 (302)
T d1ve1a1         178 GTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLS-LLDGVIQVWEEDAFPLARRLAREE  256 (302)
T ss_dssp             HHHHHHHHHHHTTCTTCEEEEEEEGGGCTTTTCCCCCCSCTTSCCSSCCTTCCGG-GCSEEEEECHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEEecccceeeeccccCcccCccCCCcCCchhhhh-cceeeeecCHHHHHHHHHHHHHHc
Confidence            99999999999999999999999976422211        11         1111 1223344666665542        


Q ss_pred             -----ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhc-cC
Q psy14801        345 -----IHSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTK-FI  383 (404)
Q Consensus       345 -----~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~-~~  383 (404)
                           .|||++++++++++++++++++||+|+||+|+||+|| +|
T Consensus       257 Gi~v~~ssgaa~aaal~~~~~~~~~~~Vv~i~~g~G~kY~st~~f  301 (302)
T d1ve1a1         257 GLFLGMSSGGIVWAALQVARELGPGKRVACISPDGGWKYLSTPLY  301 (302)
T ss_dssp             CCCBCHHHHHHHHHHHHHHHHHCTTCEEEEEECBBSGGGTTSTTT
T ss_pred             CCEEeccHHHHHHHHHHHhHHhCccCeEEEEECCCCchhcChhhc
Confidence                 3899999999999999889999999999999999999 66

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.82  E-value=5.1e-21  Score=179.24  Aligned_cols=227  Identities=17%  Similarity=0.171  Sum_probs=146.8

Q ss_pred             CcEee-cCCCCCCChhhHHhhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc
Q psy14801        151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP  225 (404)
Q Consensus       151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~  225 (404)
                      ..+|+ +|+.||++|.|  +|.|..++.++.+    .++..||+++|||  .|+++|+.++..+++++.|+|.+.+....
T Consensus        25 ~~I~lK~E~~nptGSfK--~RgA~~~i~~a~~~g~~~~~~~vv~~SsGN--~g~a~A~~a~~~G~~~~i~~p~~~~~~k~  100 (310)
T d1y7la1          25 GNVVVKIEGRNPSYSVK--CRIGANMVWQAEKDGTLTKGKEIVDATSGN--TGIALAYVAAARGYKITLTMPETMSLERK  100 (310)
T ss_dssp             TCEEEEETTSSGGGBTH--HHHHHHHHHHHHHTTSSCTTCEEEESCCSH--HHHHHHHHHHHHTCCEEEEEETTSCHHHH
T ss_pred             CEEEEEECCCCCcCcCH--HHHHHHHHHHHHHcCCCCCCceeeeecCCC--chHHHHHHHHHhhccccccchhhhhhhhh
Confidence            34666 99999999999  9999998877652    3568999999999  99999999999999999999998754322


Q ss_pred             CCCCCCCCCCCc---cccccC-CCCc--cccccc-CccccCcEEecChHHHH--HHHHHHHHhcC-----cEeccchhhH
Q psy14801        226 QSLNDVPENQIS---YNEVEG-IGYS--FAATTL-DRNVIDQWGKCGDKDTF--LMARRLIKSEG-----LLVGGSSGTA  291 (404)
Q Consensus       226 ~~~~~~~~~~~~---~~~~~~-i~~~--~~~~~~-~~~~~~~~~~v~d~e~~--~~~~~l~~~~g-----i~~~~~tg~t  291 (404)
                      ..+.........   ...... ....  ...... ...+.+++.+..+.++.  ..+.+++++.+     ++++.++|++
T Consensus       101 ~~~~~~GA~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~Ei~~~~~~~~d~vv~~~G~Gg~  180 (310)
T d1y7la1         101 RLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGS  180 (310)
T ss_dssp             HHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCEEEEEEECSSSHH
T ss_pred             hhHHHhCCceEeccCccccchhhHHHHHHHHhhcCccccCCCCcchhhHHHhhhhHHHHHHHhcCCCCCEEEecCcCCcc
Confidence            111111111000   000000 0000  000000 01122232222223332  23566776654     8888899999


Q ss_pred             HHHHHHHHHh-cCCCCeEEEEecCCCC--------------Cccccccch--------hHHhhcCccCcHHHHHHh----
Q psy14801        292 MHVACQAAKS-LRPDQRCVVILADGVR--------------NYLTKFISD--------EWMIEKGFLDEAEELEEM----  344 (404)
Q Consensus       292 lag~~~~lk~-~~~~~~vv~v~~~~~~--------------~~~~~~~~~--------~~~~~~~~~~~~~~~~~g----  344 (404)
                      ++|+.+++|. ..++.+++.+.+.+..              .+....++.        .-..+..+.++|++++.+    
T Consensus       181 ~~G~~~~lk~~~~~~~~~i~ve~~~~~~~~~~~~~~~~~~~~~~~~gig~~~~~~~~~~~~~~~~~~v~d~ea~~~~~~l  260 (310)
T d1y7la1         181 ITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNLDLSIIDRVETVDSDTALATARRL  260 (310)
T ss_dssp             HHHHHHHHHHTSCCCCEEEEEEETTSCHHHHHHHTCCCCCCCCSCTTSCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHH
T ss_pred             hhHHHHHHHHhhcccceeccccccCchhhhhhhcCCccccCCceeeecccccccHHHhhhhcceeccCCHHHHHHHHHHH
Confidence            9999999985 7789999999997531              111111111        112233455677666542    


Q ss_pred             ---------ccchhHHHHHHHHHHhc-CCCCeEEEEEcCCCcchhhc
Q psy14801        345 ---------IHSGTAMHVACQAAKSL-RPDQRCVVILADGVRNYLTK  381 (404)
Q Consensus       345 ---------~SsGa~~~~a~~~~~~~-~~~~~iv~i~~D~g~rYl~~  381 (404)
                               .|||++++++++++++. .++++||+|+||+|+||+||
T Consensus       261 ~~~eGi~vepssaa~laaa~~~a~~~~~~~~~vV~vlcd~g~kY~~t  307 (310)
T d1y7la1         261 MAEEGILAGISSGAAVAAADRLAKLPEFADKLIVVILPSASERYLST  307 (310)
T ss_dssp             HHHHCCCBCHHHHHHHHHHHHHHTSGGGTTCEEEEEECBBCSSCCCT
T ss_pred             HHHcCCEEeHHHHHHHHHHHHHHhhccCCcCEEEEEECCCcchhcCC
Confidence                     38999999999998764 36899999999999999998

>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=3.7e-21  Score=178.69  Aligned_cols=226  Identities=16%  Similarity=0.213  Sum_probs=145.2

Q ss_pred             cEee-cCCCCCCChhhHHhhHHHHHHHHhCCC--cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCC
Q psy14801        152 AVVL-DQFRNPNNPLSHYETTAEEILRDTGGK--VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSL  228 (404)
Q Consensus       152 ~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~--~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~  228 (404)
                      .+|+ +|+.||+||.|  +|.|..++.++.++  ....|++++|||  +|+++|+.++..+++++.++|...+......+
T Consensus        22 ~i~~K~E~~nptGSfK--~Rga~~~i~~a~~~g~~~~~vv~~SsGN--~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~   97 (293)
T d1o58a_          22 RIFLKLEKNNPGGSVK--DRPALFMILDAEKRGLLKNGIVEPTSGN--MGIAIAMIGAKRGHRVILTMPETMSVERRKVL   97 (293)
T ss_dssp             TEEEEEGGGSTTSBTT--HHHHHHHHHHHHHTTCCTTCEEEECSSH--HHHHHHHHHHHHTCCEEEEEETTSCHHHHHHH
T ss_pred             EEEEEECCCCCccChH--HHHHHHHHHHHHHcCCCCcceEEecCcc--hhhHHHHhhhhccceeEeeccccccHHHeecc
Confidence            4566 99999999999  99999988776422  233489999999  99999999999999999999998753221111


Q ss_pred             CCCCCCCCc---ccccc-CCCCc-ccccccCccccCcEEecChHHHH--HHHHHHHHhcC-----cEeccchhhHHHHHH
Q psy14801        229 NDVPENQIS---YNEVE-GIGYS-FAATTLDRNVIDQWGKCGDKDTF--LMARRLIKSEG-----LLVGGSSGTAMHVAC  296 (404)
Q Consensus       229 ~~~~~~~~~---~~~~~-~i~~~-~~~~~~~~~~~~~~~~v~d~e~~--~~~~~l~~~~g-----i~~~~~tg~tlag~~  296 (404)
                      .........   ..... ..... .........+.+++.+..+.+..  ..+.+++++.+     +|+..|+|++++|+.
T Consensus        98 ~~~GA~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~  177 (293)
T d1o58a_          98 KMLGAELVLTPGELGMKGAVEKALEISRETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVG  177 (293)
T ss_dssp             HHTTCEEEEECGGGHHHHHHHHHHHHHHHHCCBCCCTTTCHHHHHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHH
T ss_pred             ccCCcEEEEecCcchhhHHHHHHHHHHhccCCEEeeeccccceeeeccccHHHhhhhhcCCCCCEEEEecCcchhHHHHH
Confidence            111111000   00000 00000 00000011122232222222221  23456655543     788889999999999


Q ss_pred             HHHHhc-CCCCeEEEEecCCCCCc-----------------cccccchhHHhhcCccCcHHHHHHh-------------c
Q psy14801        297 QAAKSL-RPDQRCVVILADGVRNY-----------------LTKFISDEWMIEKGFLDEAEELEEM-------------I  345 (404)
Q Consensus       297 ~~lk~~-~~~~~vv~v~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~g-------------~  345 (404)
                      ++++++ +++.++++|+|.+...+                 .+..+... ..|..+.++|++++.+             .
T Consensus       178 ~~~k~~~~~~~~ii~vep~~~~~l~~~~~~~~~i~~i~~~~~~~~~~~~-~~d~~v~v~d~e~~~a~~~l~~~eGi~~ep  256 (293)
T d1o58a_         178 RVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRS-VIDEVITVEDEEAYEMARYLAKKEGLLVGI  256 (293)
T ss_dssp             HHHHHHHGGGSEEEEEEETTSCTTTTCCCCCCCCTTSCCSSCCTTCCGG-GCCEEEEECHHHHHHHHHHHHHHHCCCBCH
T ss_pred             HHHHHHCCCCCeEEEEecCCCccccCCCcCCcccccCCCCccchhhhhh-hCcEEEEECHHHHHHHHHHHHHHcCCEEeH
Confidence            999985 45689999998764321                 11111111 2234455777776653             3


Q ss_pred             cchhHHHHHHHHHHhcCCCCeEEEEEcCCCcchhhcc
Q psy14801        346 HSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKF  382 (404)
Q Consensus       346 SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g~rYl~~~  382 (404)
                      |||++++++++++++++++++||+|+||+|+||||++
T Consensus       257 ssaa~~aa~~~~a~~~~~~~~Vv~i~~d~g~kYls~~  293 (293)
T d1o58a_         257 SSGANVAAALKVAQKLGPDARVVTVAPDHAERYLSIL  293 (293)
T ss_dssp             HHHHHHHHHHHHHHTSCTTCCEEEEECBBGGGCTTTC
T ss_pred             HHHHHHHHHHHHHHHcCCcCEEEEEECCCCcccccCC
Confidence            8999999999999999899999999999999999985

>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=1.5e-16  Score=155.17  Aligned_cols=294  Identities=14%  Similarity=0.035  Sum_probs=187.7

Q ss_pred             CCCeeecCCCCCCCCCeEEEEeCCCCCCCChhhHHHHHH---HHHHHHh-C-C----CCCCCEEEecCCChHHHHHHHHH
Q psy14801         23 KVPLLPQSKQGSILLPTTDAKCEFMNPTGSLKDRAAWRM---IEDAETA-G-V----LKPGYTIVEPSSGNTGIGLAMVA   93 (404)
Q Consensus        23 ~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~---l~~a~~~-g-~----~~~~~~vv~~ssGN~g~a~A~~a   93 (404)
                      -+||.++..   ...-++|+-.-++.||.+|||.++..+   +.+.+++ + .    -...-+|+++|||.+|.|.+.+.
T Consensus        95 v~pl~~~~~---~~~~~~~vlELfhGPT~aFKD~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~il~aTSGDTG~Aa~~af  171 (511)
T d1kl7a_          95 VTPLVQNVT---GDKENLHILELFHGPTYAFKDVALQFVGNLFEYFLQRTNANLPEGEKKQITVVGATSGDTGSAAIYGL  171 (511)
T ss_dssp             SSCEECCTT---CSSSCEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHHHTTSCSSSCCCEEEEEECSSSHHHHHHHHH
T ss_pred             cCccccccc---CCCCceEEEeeccCCcccccCcchhhHHHHHHHHHHhcccccccccCceEEEEEecCCCccHHHHHHh
Confidence            378777532   223379999999999999999988743   4444432 1 1    11124799999999998777765


Q ss_pred             H-HcCCeEEEEecC-CCCHHHHHHHHHcC-CEEEEeCCCCCCCChhhHHHHHHHHHHhCCC-cEeecCCCCCCChhhHHh
Q psy14801         94 A-IKGYKMVVVMPM-KMSKEKVYTMKALG-AKIIRTQNDKSYDHPEGMIAGAHRIASQMKN-AVVLDQFRNPNNPLSHYE  169 (404)
Q Consensus        94 ~-~~G~~~~iv~p~-~~~~~k~~~l~~~G-a~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~-~~~~~e~~np~~si~g~~  169 (404)
                      + ..+++++|+.|. .+++.++.+|...+ -+|+.+..+++||+++..   ++++..+..- .-+-.-..|..|+..-..
T Consensus       172 ~~~~~i~v~vlyP~~~vS~iQ~~Qmtt~~~~Nv~~i~v~G~fDDcq~~---vk~~f~d~~~~~~~~l~s~NSiNw~Rll~  248 (511)
T d1kl7a_         172 RGKKDVSVFILYPTGRISPIQEEQMTTVPDENVQTLSVTGTFDNCQDI---VKAIFGDKEFNSKHNVGAVNSINWARILA  248 (511)
T ss_dssp             TTCTTEEEEEEEETTSSCHHHHHHHHHCCCTTEEEEEESSCHHHHHHH---HHHHHHCSSCC--CCBCCCCSCCHHHHHH
T ss_pred             cCCCCceeEEeccCCCCchHHHHHHhhcCCceEEEEEeccChHHHHHH---HHHHHhhhhhhcccccccccceeehhhhh
Confidence            5 679999999998 48888777887764 477777766788887666   4444443311 111123456666533223


Q ss_pred             hHHHHHH--HHhC----CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccCCCCCC--C-CCCCcccc
Q psy14801        170 TTAEEIL--RDTG----GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQSLNDV--P-ENQISYNE  240 (404)
Q Consensus       170 ~~a~ei~--~q~~----~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~~~~~~--~-~~~~~~~~  240 (404)
                      .+.+..+  .|+.    .++=.++||+|+-|++++-.+|.+.-.|=-|+|+....+.........+..  . ....+...
T Consensus       249 QivyYf~ay~q~~~~~~~~~v~f~VPTGNfGni~Ag~~Ak~MGLPI~klivAtN~NdiL~rf~~tG~y~~~~~v~~T~SP  328 (511)
T d1kl7a_         249 QMTYYFYSFFQATNGKDSKKVKFVVPSGNFGDILAGYFAKKMGLPIEKLAIATNENDILDRFLKSGLYERSDKVAATLSP  328 (511)
T ss_dssp             HHHHHHHHHHHHHSSSSCCCEEEEEECSSSHHHHHHHHHHHHTCCCCCEEEEECSCCHHHHHHHHSEEECCSSCCCCSCG
T ss_pred             hHHHHHHHHHHHhhhccCCeeEEEeccCcHHHHHHHHHHHhcCCChheEEEecCCcchHHHHhcCCCCCCcCcccCcCcc
Confidence            3333322  2322    234468999999999999888888888877999999988743211111110  0 00111111


Q ss_pred             ccCCCCcccccccC----------------------------------------ccccC--cEEecChHHHHHHHHHHHH
Q psy14801        241 VEGIGYSFAATTLD----------------------------------------RNVID--QWGKCGDKDTFLMARRLIK  278 (404)
Q Consensus       241 ~~~i~~~~~~~~~~----------------------------------------~~~~~--~~~~v~d~e~~~~~~~l~~  278 (404)
                      ..+|..+..-+++.                                        .....  ....++|.|+.++++++++
T Consensus       329 SMDI~vsSNfERLL~~l~~~~~~~gd~~~~~~~v~~~M~~f~~~G~~~l~~~~l~~l~~~F~s~svsD~et~~tIk~vye  408 (511)
T d1kl7a_         329 AMDILISSNFERLLWYLAREYLANGDDLKAGEIVNNWFQELKTNGKFQVDKSIIEGASKDFTSERVSNEETSETIKKIYE  408 (511)
T ss_dssp             GGCCSSCTTHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHSEEECCHHHHHHHTTTEEEEECCHHHHHHHHHHHHH
T ss_pred             HHhhhhhHHHHHHHHHHhcchhcccchhhhHHHHHHHHHHHHhcCCccccchhhhccccceeEEEeCHHHHHHHHHHHHH
Confidence            22222111100000                                        00001  1356899999999999998


Q ss_pred             hc----CcEeccchhhHHHHHHHHHHh-cCCCCeEEEEecCCCCCcccc
Q psy14801        279 SE----GLLVGGSSGTAMHVACQAAKS-LRPDQRCVVILADGVRNYLTK  322 (404)
Q Consensus       279 ~~----gi~~~~~tg~tlag~~~~lk~-~~~~~~vv~v~~~~~~~~~~~  322 (404)
                      +.    |++++|+|+.++.++.++..+ ..++..+|++.|.++.+|.+.
T Consensus       409 ~~~n~~gYllDPHTAVG~~aa~k~~~~~~~~~~p~VvLATAHPaKFpda  457 (511)
T d1kl7a_         409 SSVNPKHYILDPHTAVGVCATERLIAKDNDKSIQYISLSTAHPAKFADA  457 (511)
T ss_dssp             HCCSSTTCCCCHHHHHHHHHHHHHHHHHCCTTSEEEEEECBCGGGGHHH
T ss_pred             hcCccCCeEECCcHHHHHHHHHHHHHhccCCCCcEEEEeCcChhhhHHH
Confidence            87    999999999999999888655 455667899999999887543

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=4.4e-18  Score=160.51  Aligned_cols=235  Identities=11%  Similarity=0.093  Sum_probs=147.6

Q ss_pred             HHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801        143 HRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS  220 (404)
Q Consensus       143 ~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~  220 (404)
                      .+|.++.+..+|+ +|+.||++|.|  +|.|+.++.++.. .+...|+++++||  +|+++|+.++..++++++++|...
T Consensus        34 ~~L~~~lg~~i~~K~E~~nptGS~K--dRga~~~i~~~~~~~~~~~vv~assGN--~g~a~A~~a~~~g~~~~i~~p~~~  109 (331)
T d1tdja1          34 EKLSSRLDNVILVKREDRQPVHSFK--LRGAYAMMAGLTEEQKAHGVITASAGN--HAQGVAFSSARLGVKALIVMPTAT  109 (331)
T ss_dssp             HHHHHHTTSEEEEECGGGSTTSSST--HHHHHHHHHTTTTSSCSSSCEEEECSS--SHHHHHHHHHHTTCCEEEECCSSC
T ss_pred             HHhhHHHCCEEEEEECCCCCCCChH--HHHHHHHHHHHHHhCCCCeeeecccch--hHHHHHHhhccccccceeeccccc
Confidence            4455555566777 99999999999  9999999988763 3556789999999  999999999999999999999987


Q ss_pred             cccccCCCCCCCCCCC-ccccccC-CCC-cccccccCccccCcEEecChHHH-HHHHHHHHHhcC----cEeccchhhHH
Q psy14801        221 ILAQPQSLNDVPENQI-SYNEVEG-IGY-SFAATTLDRNVIDQWGKCGDKDT-FLMARRLIKSEG----LLVGGSSGTAM  292 (404)
Q Consensus       221 ~~~~~~~~~~~~~~~~-~~~~~~~-i~~-~~~~~~~~~~~~~~~~~v~d~e~-~~~~~~l~~~~g----i~~~~~tg~tl  292 (404)
                      +......+........ ....... ... .......+..+.+++.+....+- ...+.++.++.+    +|+..|||+++
T Consensus       110 ~~~k~~~l~~~Ga~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~D~vv~~~G~GG~~  189 (331)
T d1tdja1         110 ADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGFTWVPPFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGGGGLA  189 (331)
T ss_dssp             CHHHHHHHHHHSCEEECCCSSHHHHHHHHHHHHHHHCCEECCSSCCHHHHHHHHHHHHHHHHHCTTCCEEEEECSSSHHH
T ss_pred             hhHHHHHHHhcCCEEEEcCcccccchhhhhhhhhcCCCccccccCChHHhhhhhhHHHHHHHhcCCCCEEEEeCChhHHH
Confidence            5322111111000000 0000000 000 00000001112222222111122 233456666554    88899999999


Q ss_pred             HHHHHHHHhcCCCCeEEEEecCCCCCcc----------------------ccccch-hH-----HhhcCccCcHHHHHHh
Q psy14801        293 HVACQAAKSLRPDQRCVVILADGVRNYL----------------------TKFISD-EW-----MIEKGFLDEAEELEEM  344 (404)
Q Consensus       293 ag~~~~lk~~~~~~~vv~v~~~~~~~~~----------------------~~~~~~-~~-----~~~~~~~~~~~~~~~g  344 (404)
                      +|+.+.+++..++.+|+.|+|.+...+.                      .+..++ .|     ..+..+.++|+++...
T Consensus       190 aG~~~~~~~~~~~~~ii~ve~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a  269 (331)
T d1tdja1         190 AGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAA  269 (331)
T ss_dssp             HHHHHHHHHHCTTCEEEEEEETTTCHHHHHHHHTSCCCCSCCCSSSSTTCCSSCCCHHHHHHTTSCCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHhCCCcEEEEecccccchHHHHHhCCCeeecCCCCceeccccCCCCCHHHHHHhhccCCEEEEecHHHHHHH
Confidence            9999999999999999999986642110                      000111 12     1233345667665542


Q ss_pred             -------------ccchhHHHHHHHHHHh-cCCCCeEEEEEcCC-----Ccchhhc
Q psy14801        345 -------------IHSGTAMHVACQAAKS-LRPDQRCVVILADG-----VRNYLTK  381 (404)
Q Consensus       345 -------------~SsGa~~~~a~~~~~~-~~~~~~iv~i~~D~-----g~rYl~~  381 (404)
                                   .|||++++++++++++ ..++++||+|+||+     |.||+++
T Consensus       270 ~~~la~~eGi~~eps~~~alAal~~~~~~~~~~g~~Vv~vltGgnid~~~~~~~~e  325 (331)
T d1tdja1         270 MKDLFEDVRAVAEPSGALALAGMKKYIALHNIRGERLAHILSGANVNFHGLRYVSE  325 (331)
T ss_dssp             HHHHHHHTCCCCCHHHHHHHHHHHHHHHHHTCCSCEEEEECCCCCCCTTHHHHHHH
T ss_pred             HHHHHHHcCcEEeHHHHHHHHHHHHHHhhccCCcCeEEEEeCCCCCCcchhHHHHH
Confidence                         3888899999987665 33689999999995     8899885

>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: L-serine dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.7e-16  Score=148.79  Aligned_cols=245  Identities=10%  Similarity=0.041  Sum_probs=148.5

Q ss_pred             HHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCc
Q psy14801        143 HRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI  221 (404)
Q Consensus       143 ~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~  221 (404)
                      .+|.+..+..+|+ +|+.||++|.|  +|.+..++.++.+.-...||+++|||  +|+++|+.++..|+++++|+|++.+
T Consensus        14 ~~L~~~~g~~i~~K~E~~nptGSfK--~R~a~~~~~~a~~~g~~~vv~aSsGN--~g~a~A~~a~~~G~~~~i~~p~~~~   89 (319)
T d1p5ja_          14 MALSKMAGTSVYLKMDSAQPSGSFK--IRGIGHFCKRWAKQGCAHFVCSSAGN--AGMAAAYAARQLGVPATIVVPGTTP   89 (319)
T ss_dssp             HHHHHHHTSCEEEECGGGSGGGBTT--HHHHHHHHHHHHHTTCCEEEECCSSH--HHHHHHHHHHHHTCCEEEEECTTCC
T ss_pred             HHhHHHHCCEEEEEeCCCCCCCCcH--HHHHHHHHHHHHHcCCCEEEEeCCCc--HHHHHHHHhhhccccceeccccccc
Confidence            3445444456777 99999999999  99999999887643223566788999  9999999999999999999999885


Q ss_pred             ccccCCCCCCCCCCC--cccc--ccCCCCcccccccCccccCcEEecChHHHH-HHHHHHHHhcC-----cEeccchhhH
Q psy14801        222 LAQPQSLNDVPENQI--SYNE--VEGIGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKSEG-----LLVGGSSGTA  291 (404)
Q Consensus       222 ~~~~~~~~~~~~~~~--~~~~--~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~~g-----i~~~~~tg~t  291 (404)
                      ......+........  ....  .......+....-...+.+++.+....+.+ ..+.+++++.+     +++..++|++
T Consensus        90 ~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~q~~~~~d~vv~~vg~Gg~  169 (319)
T d1p5ja_          90 ALTIERLKNEGATCKVVGELLDEAFELAKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPGAIALSVGGGGL  169 (319)
T ss_dssp             HHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHHSTTEEECCSSCCHHHHHHHTHHHHHHHHHCSSCCSEEEEECSSSHH
T ss_pred             cccccccccceeccccccccchhHHHHHHHHhhccCcccccccccccccccccchhhhhhhccccCCCceeeecccCCcc
Confidence            422111111110000  0000  000000000000001122232222222222 23456666543     7888899999


Q ss_pred             HHHHHHHHHhcC-CCCeEEEEecCCCCCc-----------------cccccc-----h---hHH---hhcCccCcHHHHH
Q psy14801        292 MHVACQAAKSLR-PDQRCVVILADGVRNY-----------------LTKFIS-----D---EWM---IEKGFLDEAEELE  342 (404)
Q Consensus       292 lag~~~~lk~~~-~~~~vv~v~~~~~~~~-----------------~~~~~~-----~---~~~---~~~~~~~~~~~~~  342 (404)
                      ++|+...+++.. ++.+++.+.|.+...+                 +...++     .   .++   .+..+.++|+++.
T Consensus       170 ~~g~~~~~~~~~~~~~~~i~ve~~~~~~~~~s~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~  249 (319)
T d1p5ja_         170 LCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGSQALKLFQEHPIFSEVISDQEAV  249 (319)
T ss_dssp             HHHHHHHHHHTTCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCCCCSCGGGCCSSCCHHHHHHHHHSCEEEEEECHHHHH
T ss_pred             hhhhHHHHHHhccCCeeeeecccccccccchhhhccccccccccccccccccccccccccchhhhhccceeeecCHHHHH
Confidence            999999998754 7899999998764210                 000111     0   111   1223456776665


Q ss_pred             Hh-------------ccchhHHHHHHHHHHh--------cCCCCeEEEEEcCCCcchhhccCCHHHHHHcCC
Q psy14801        343 EM-------------IHSGTAMHVACQAAKS--------LRPDQRCVVILADGVRNYLTKFISDEWMIEKGF  393 (404)
Q Consensus       343 ~g-------------~SsGa~~~~a~~~~~~--------~~~~~~iv~i~~D~g~rYl~~~~~~~w~~~~~~  393 (404)
                      .+             .|||++++++++.+.+        ..++++||+++|++|..+++++  +.|.+..|+
T Consensus       250 ~a~~~l~~~egi~~epssa~~~aal~~~~~~~~~~~~~~~~~~~~vVvv~~~G~n~d~~~l--~~~~e~~~~  319 (319)
T d1p5ja_         250 AAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGSNISLAQL--RALKEQLGM  319 (319)
T ss_dssp             HHHHHHHHHTCCCCCHHHHHHHHHHHTTHHHHHHHTTSSCSSCSCEEEECCBCSSCCHHHH--HHHHHHHTC
T ss_pred             HHHHHHHHHcCEEEeHHHHHHHHHHHHHHHHHHHHhccccCCCCCEEEEEcCCCCCCHHHH--HHHHHhcCC
Confidence            53             3889999998764321        2456899999999999999986  577766553

>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=3.8e-16  Score=145.67  Aligned_cols=223  Identities=10%  Similarity=0.069  Sum_probs=135.0

Q ss_pred             HHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCc
Q psy14801        143 HRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSI  221 (404)
Q Consensus       143 ~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~  221 (404)
                      .++.+..+..+|+ +|+.||++|.|  +|.|+.++.+.+.  +..|+++++||  +|+++|+.++..|+++++++|++.+
T Consensus        26 ~~L~~~~g~~i~~K~E~~nPtGSfK--dRgA~~~~~~~~~--~~~vv~aSsGN--~g~a~A~~aa~~G~~~~i~vp~~~~   99 (310)
T d1ve5a1          26 RLLDGLLGKRLLLKAEHLQKTGSFK--ARGALSKALALEN--PKGLLAVSSGN--HAQGVAYAAQVLGVKALVVMPEDAS   99 (310)
T ss_dssp             HHHHHHTTSEEEEEEGGGSGGGBTH--HHHHHHHHHHSSS--CCCEEEECSSH--HHHHHHHHHHHHTCCEEEECCCC--
T ss_pred             hhhhHHhCCEEEEEeCCCCCcCCcH--HHHHHHHHHHhcc--cCCccccCchh--hHHHHHHHHHHcCCeEEEeecccch
Confidence            3455555566777 99999999999  9999988888763  33478999999  9999999999999999999999875


Q ss_pred             ccccCCCCCCCCCCCc-cccccC---CCCcccccccCccccCcEEecChHHHH-HHHHHHHHh--------cCcEeccch
Q psy14801        222 LAQPQSLNDVPENQIS-YNEVEG---IGYSFAATTLDRNVIDQWGKCGDKDTF-LMARRLIKS--------EGLLVGGSS  288 (404)
Q Consensus       222 ~~~~~~~~~~~~~~~~-~~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~~-~~~~~l~~~--------~gi~~~~~t  288 (404)
                      ......+......... ......   .... ........+++++.+....+-+ ..+.+++++        +.++++.++
T Consensus       100 ~~~~~~~~~~Ga~vi~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~np~~~~g~~t~~~Ei~~q~~~~~~~~d~vv~~~g~  178 (310)
T d1ve5a1         100 PYKKACARAYGAEVVDRGVTAKNREEVARA-LQEETGYALIHPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGG  178 (310)
T ss_dssp             CCHHHHHHHTTCEEECTTCCTTTHHHHHHH-HHHHHCCEECCSSSSHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECSS
T ss_pred             HHHHHHHhhhccccceeeccchhHHHHHHH-HHHhcCCcCCCCCCChhhHhhhhhhHHHHHHHHHhcCCceeeeeeccCc
Confidence            4321111111100000 000000   0000 0000011222332211111111 123344433        347888899


Q ss_pred             hhHHHHHHHHHHhcCCCCeEEEEecCCCCCc------------------ccccc-----ch-hH-----HhhcCccCcHH
Q psy14801        289 GTAMHVACQAAKSLRPDQRCVVILADGVRNY------------------LTKFI-----SD-EW-----MIEKGFLDEAE  339 (404)
Q Consensus       289 g~tlag~~~~lk~~~~~~~vv~v~~~~~~~~------------------~~~~~-----~~-~~-----~~~~~~~~~~~  339 (404)
                      |+++.|+.+.+++..+..+++.+++.+...+                  ....+     +. .|     ..|..+.++|+
T Consensus       179 Gg~~~g~~~~~~~~~~~~~ii~ve~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~v~V~d~  258 (310)
T d1ve5a1         179 GGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTLSLGERTFPILRERVDGILTVSEE  258 (310)
T ss_dssp             SHHHHHHHHHHHHHCTTSEEEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGGCCSSCCTTTHHHHHHHCCEEEEECHH
T ss_pred             chhhhhhhhhhhccCCccceEEEEeeccchhhhhhccccccccCccccccccccCCCCcchhhHHHhcccCCeEEEECHH
Confidence            9999999999999999999999998543110                  00000     00 01     12344567777


Q ss_pred             HHHHh-------------ccchhHHHHHHHHHHhcCCCCeEEEEEcCCC
Q psy14801        340 ELEEM-------------IHSGTAMHVACQAAKSLRPDQRCVVILADGV  375 (404)
Q Consensus       340 ~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g  375 (404)
                      ++..+             .|||+++++++++++++  +++||+|+| +|
T Consensus       259 e~~~a~~~La~~eGi~vepssaa~lAa~~~~~~~~--~~~Vvvvl~-Gg  304 (310)
T d1ve5a1         259 ALLEAERLLFTRTKQVVEPTGALPLAAVLEHGARL--PQTLALLLS-GG  304 (310)
T ss_dssp             HHHHHHHHHHHHTCBCCCGGGGHHHHHHHHHGGGS--CSEEEEEEC-BC
T ss_pred             HHHHHHHHHHHHcCCEEcHHHHHHHHHHHHhhHhc--CCCEEEEeC-CC
Confidence            76553             38999999999988764  689999998 45

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.59  E-value=5.9e-16  Score=143.80  Aligned_cols=221  Identities=15%  Similarity=0.139  Sum_probs=133.3

Q ss_pred             CcEee-cCCCCCCChhhHHhhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccccc
Q psy14801        151 NAVVL-DQFRNPNNPLSHYETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQP  225 (404)
Q Consensus       151 ~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~  225 (404)
                      ..+|+ +|+.||++|.|  +|.|..++.++.+    +++.+|+++++||  +|+++|+.++..+++++.|+|.+.+....
T Consensus        25 ~~i~~K~E~~~ptGSfK--~Rga~~~i~~a~~~g~~~~~~~vv~assGn--~g~a~A~~a~~~g~~~~i~~p~~~~~~k~  100 (302)
T d1fcja_          25 GRILAKVESRNPSFSVK--CRIGANMIWDAEKRGVLKPGVELVEPTNGN--TGIALAYVAAARGYKLTLTMPETMSIERR  100 (302)
T ss_dssp             SCEEEEETTSSGGGBTH--HHHHHHHHHHHHHHTCCCTTCEEEEECSSH--HHHHHHHHHHHHTCCEEEEEETTSCHHHH
T ss_pred             CEEEEEecCCCCCCCCH--HHHHHHHHHHHHHcCCCCCCceEEEecccc--chhHHHHHHHHhccCCceEEeecCcHHHH
Confidence            45666 99999999999  9999998877532    3668899999999  99999999999999999999988753221


Q ss_pred             CCCCCCCCCCC---cccc-ccCCCCcc---cccccCccccCcEEecChHHH--HHHHHHHHHhcC-----cEeccchhhH
Q psy14801        226 QSLNDVPENQI---SYNE-VEGIGYSF---AATTLDRNVIDQWGKCGDKDT--FLMARRLIKSEG-----LLVGGSSGTA  291 (404)
Q Consensus       226 ~~~~~~~~~~~---~~~~-~~~i~~~~---~~~~~~~~~~~~~~~v~d~e~--~~~~~~l~~~~g-----i~~~~~tg~t  291 (404)
                      ..+........   .... ........   ........+..++....+...  ...+.|++++.+     +++..|+|++
T Consensus       101 ~~~~~~ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~Ei~e~~~~~~d~vv~~vG~GG~  180 (302)
T d1fcja_         101 KLLKALGANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGT  180 (302)
T ss_dssp             HHHHHTTCEEEEECGGGHHHHHHHHHHHHHHTSTTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHH
T ss_pred             HHHHHhccceEEeccccccchhhhHHHHHHhhhccceeccccccccchhHHHHhHHHHHHHHhcCCCCCEEEEcCCCccc
Confidence            11111110000   0000 00000000   000000011111111112222  123456666543     7888899999


Q ss_pred             HHHHHHHHHhcCCCCeEEEE--ecCCCCC--------------ccccccc--------hhHHhhcCccCcHHHHHHh---
Q psy14801        292 MHVACQAAKSLRPDQRCVVI--LADGVRN--------------YLTKFIS--------DEWMIEKGFLDEAEELEEM---  344 (404)
Q Consensus       292 lag~~~~lk~~~~~~~vv~v--~~~~~~~--------------~~~~~~~--------~~~~~~~~~~~~~~~~~~g---  344 (404)
                      ++|+..++|+..+..+++.+  .+.....              .....++        +.-..+..+.++|+++..+   
T Consensus       181 ~~Gi~~~lk~~~~~~~~~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~gig~~~~~~~l~~~~~d~~~~Vsd~ea~~a~~~  260 (302)
T d1fcja_         181 LTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPGNLDLKLIDKVVGITNEEAISTARR  260 (302)
T ss_dssp             HHHHHHHHHTTTCCTTCEEEEEEETTSCHHHHHHTTCCCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHH
T ss_pred             cccceeeeeeccccccccccccccccchhhhccccccccccCCceecccCCCcCchhhhcccCcEEEEECHHHHHHHHHH
Confidence            99999999998776655444  3332110              0001111        1112334455777776553   


Q ss_pred             ----------ccchhHHHHHHHHHHhc-CCCCeEEEEEcCCC
Q psy14801        345 ----------IHSGTAMHVACQAAKSL-RPDQRCVVILADGV  375 (404)
Q Consensus       345 ----------~SsGa~~~~a~~~~~~~-~~~~~iv~i~~D~g  375 (404)
                                .|||++++++++++++. .++++||+|+||+|
T Consensus       261 l~~~~gi~~epssaa~laaa~~l~~~~~~~~~~vvvilc~~G  302 (302)
T d1fcja_         261 LMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSG  302 (302)
T ss_dssp             HHHHHCCCCCHHHHHHHHHHHHHTTSGGGTTCCEEEEECBCC
T ss_pred             HHHHcCCEEcHHHHHHHHHHHHHHHhcCCCcCeEEEEeCCCC
Confidence                      38999999999998753 46899999999998

>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.57  E-value=7.9e-16  Score=147.86  Aligned_cols=233  Identities=13%  Similarity=0.088  Sum_probs=136.9

Q ss_pred             HHHHHHhC-CCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCC
Q psy14801        142 AHRIASQM-KNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPF  218 (404)
Q Consensus       142 a~~l~~~~-~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~  218 (404)
                      +.+|+++. +..+|+ +|+.||++|.|  +|.+..++..+.+. .+.+|+++++||  +|+++|+.++..+++++.++|.
T Consensus        56 ~~~Ls~~lgg~~Iy~K~E~lnptGS~K--dR~a~~~i~~a~~~G~~~~v~~~s~Gn--~g~a~A~aaa~~G~~~~i~mp~  131 (386)
T d1v8za1          56 AKRLTEKIGGAKIYLKREDLVHGGAHK--TNNAIGQALLAKFMGKTRLIAETGAGQ--HGVATAMAGALLGMKVDIYMGA  131 (386)
T ss_dssp             CHHHHHHHTSSEEEEEEGGGSTTSBTH--HHHHHHHHHHHHHTTCCEEEEEESSSH--HHHHHHHHHHHTTCEEEEEEEH
T ss_pred             hHhhHHhcCCCeEEEEeccCCCCCCcc--chHHHHHHHHHhhcCCceeEeecccch--HHHHHHHHHHHcCCcccccccc
Confidence            44565543 356777 99999999999  99999988877633 567899999999  9999999999999999999985


Q ss_pred             CCcccccC---CCCCCCCCCC----cccccc-CC-----------CCc-ccccccC-----ccccCcEEecChHHHHHHH
Q psy14801        219 GSILAQPQ---SLNDVPENQI----SYNEVE-GI-----------GYS-FAATTLD-----RNVIDQWGKCGDKDTFLMA  273 (404)
Q Consensus       219 ~~~~~~~~---~~~~~~~~~~----~~~~~~-~i-----------~~~-~~~~~~~-----~~~~~~~~~v~d~e~~~~~  273 (404)
                      ..+.....   ..........    ...... ..           ... .......     ..++..+..+...|+.   
T Consensus       132 ~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~---  208 (386)
T d1v8za1         132 EDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAK---  208 (386)
T ss_dssp             HHHTTCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHHHHHHHHHHH---
T ss_pred             hhhhhhHHHHHHHHhcCCeEEEecCCcchHHHHHHHHHHHHHhhhhhhhhccccccCccccchhhhccchhhhhhHH---
Confidence            54221000   0000000000    000000 00           000 0000000     0000011112222222   


Q ss_pred             HHHHHhc-----CcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCcc----------------------------
Q psy14801        274 RRLIKSE-----GLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYL----------------------------  320 (404)
Q Consensus       274 ~~l~~~~-----gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~----------------------------  320 (404)
                      .++..++     .+++..|+|++++|+.+. ...+++.+++.++|.+.....                            
T Consensus       209 ~q~~~~~g~~pd~vv~~vGgG~~~~g~~~~-~~~~~~v~iigvep~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g  287 (386)
T d1v8za1         209 AQILEAEGQLPDVIVACVGGGSNAMGIFYP-FVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEG  287 (386)
T ss_dssp             HHHHHHHSSCCSEEEEECSSSHHHHHHHGG-GTTCTTSEEEEEEEEETBGGGTBSCCHHHHCEEEEETTEEEEECBCTTS
T ss_pred             HHHHHhcCCCCCEEEECCCChHHHHHHHHH-hhhccCceEEEEecCcccccccccccccccCccccccchhheeccCCCC
Confidence            2233332     255666677777777554 444688999999985421100                            


Q ss_pred             ----cccc---------c--hhHHhhc----CccCcHHHHHHh-------------ccchhHHHHHHHHHHhcCCCCeEE
Q psy14801        321 ----TKFI---------S--DEWMIEK----GFLDEAEELEEM-------------IHSGTAMHVACQAAKSLRPDQRCV  368 (404)
Q Consensus       321 ----~~~~---------~--~~~~~~~----~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv  368 (404)
                          ....         .  ..++.+.    ...++|++++++             .|||++++++++++++++++++||
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~VtD~E~~~a~~~La~~EGI~~~~~sa~alA~a~kla~~~~~~~~VV  367 (386)
T d1v8za1         288 QIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIII  367 (386)
T ss_dssp             CBCCCCCSSTTSCCSBCCHHHHHHHHTTSEEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHTSCTTCEEE
T ss_pred             cccccccccccccccccchHHHHHHhcCceEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHHHHHHcCCCCEEE
Confidence                0000         0  0112221    134677776552             388999999999999999999999


Q ss_pred             EEEcCCCcchhhcc
Q psy14801        369 VILADGVRNYLTKF  382 (404)
Q Consensus       369 ~i~~D~g~rYl~~~  382 (404)
                      +++|++|.+|++++
T Consensus       368 ~iltG~G~kD~~~~  381 (386)
T d1v8za1         368 VNLSGRGDKDLDIV  381 (386)
T ss_dssp             EEECBBSGGGHHHH
T ss_pred             EEeCCCccccHHHH
Confidence            99999999999975

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.56  E-value=1e-16  Score=150.09  Aligned_cols=222  Identities=13%  Similarity=0.100  Sum_probs=138.2

Q ss_pred             HHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC-cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy14801        143 HRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK-VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGS  220 (404)
Q Consensus       143 ~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~-~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~  220 (404)
                      .++.+..+..+|+ +|+.||+||.|  +|.|..++.++.+. ....|+++++||  +|+++|+.++..++++++++|.+.
T Consensus        28 ~~l~~~~g~~i~~K~E~~nptGSfK--dRga~~~~~~~~~~~~~~~vv~~ssGN--~g~a~A~~a~~~g~~~~i~~p~~~  103 (318)
T d1v71a1          28 STVNKEFVAEVFFKCENFQKMGAFK--FRGALNALSQLNEAQRKAGVLTFSSGN--HAQAIALSAKILGIPAKIIMPLDA  103 (318)
T ss_dssp             HHHHHHHTSEEEEEEGGGSGGGBTH--HHHHHHHHTTCCHHHHHHCEEECCSSH--HHHHHHHHHHHTTCCEEEEEETTC
T ss_pred             hhhhHHHCCEEEEEeCCCCCCCCHH--HHHHHHHHHHhhhccccceeeeeccch--hhHHHHHhhcccccceeecccccc
Confidence            3444444456777 99999999999  99999998877632 455799999999  999999999999999999999987


Q ss_pred             cccccCCCCCCCCCCCcc-ccccC---CCCcccccccCccccCcEEecChHHH----HHHHHHHHHhcC----cEeccch
Q psy14801        221 ILAQPQSLNDVPENQISY-NEVEG---IGYSFAATTLDRNVIDQWGKCGDKDT----FLMARRLIKSEG----LLVGGSS  288 (404)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~-~~~~~---i~~~~~~~~~~~~~~~~~~~v~d~e~----~~~~~~l~~~~g----i~~~~~t  288 (404)
                      +......+.......... ...+.   .... ........+.+++   +++..    ..++.|+++|.+    +++..|+
T Consensus       104 ~~~k~~~l~~~Ga~vi~~~~~~~~~~~~a~~-~a~~~g~~~~~~~---~~~~~~~g~~t~~~Ei~~q~~~~d~vvv~~G~  179 (318)
T d1v71a1         104 PEAKVAATKGYGGQVIMYDRYKDDREKMAKE-ISEREGLTIIPPY---DHPHVLAGQGTAAKELFEEVGPLDALFVCLGG  179 (318)
T ss_dssp             CHHHHHHHHHTTCEEEEECTTTTCHHHHHHH-HHHHHTCBCCCSS---SSHHHHHHHTHHHHHHHHHHCCCSEEEEECSS
T ss_pred             cHHHHHHHHHcCCcEEeccCCchHHHHHHHH-HHHhcCCEecCCc---cccccccccchHHHHHHHhcCCCCEEEEcCCc
Confidence            532211111111100000 00000   0000 0000001122222   22222    134556666544    8888899


Q ss_pred             hhHHHHHHHHHHhcCCCCeEEEEecCCCCCc--------------cc--------cccc---hhHH---hhcCccCcHHH
Q psy14801        289 GTAMHVACQAAKSLRPDQRCVVILADGVRNY--------------LT--------KFIS---DEWM---IEKGFLDEAEE  340 (404)
Q Consensus       289 g~tlag~~~~lk~~~~~~~vv~v~~~~~~~~--------------~~--------~~~~---~~~~---~~~~~~~~~~~  340 (404)
                      |++++|+..++++..++.+++.+.+.+....              ..        +..+   ..++   .+..+.++|++
T Consensus       180 GG~~~Gi~~~~~~~~~~~~ii~v~~~~~~~~~~s~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e  259 (318)
T d1v71a1         180 GGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLGNYTFSIIKEKVDDILTVSDEE  259 (318)
T ss_dssp             SHHHHHHHHHHHHHCTTCEEEEEEEGGGCHHHHHHHHTSCCCCCCCCCSCTTSCCSSCCHHHHHHHHHHCCEEEEECHHH
T ss_pred             hHHHHHHHHHHHhhCCCceeecccccchhhhhhccccccccccCCCCccccccccCCcchHHHHHHHhccCceeeECHHH
Confidence            9999999999999999999999988542110              00        0001   0111   12234566766


Q ss_pred             HHHh-------------ccchhHHHHHHHHHHhcCCCCeEEEEEcC
Q psy14801        341 LEEM-------------IHSGTAMHVACQAAKSLRPDQRCVVILAD  373 (404)
Q Consensus       341 ~~~g-------------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D  373 (404)
                      +..+             .|||+++++++++++++ ++++||+|+|.
T Consensus       260 ~~~a~~~la~~egi~~eps~a~~lAa~~~~~~~~-~~~~Vv~il~G  304 (318)
T d1v71a1         260 LIDCLKFYAARMKIVVEPTGCLSFAAARAMKEKL-KNKRIGIIISG  304 (318)
T ss_dssp             HHHHHHHHHHHTCCCCCGGGGHHHHHHHHTGGGG-TTCEEEEEECB
T ss_pred             HHHHHHHHHHHcCcEEeHHHHHHHHHHHHhHHHc-CCCcEEEEeCC
Confidence            6552             38888888888887764 78899999996

>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.49  E-value=8.7e-15  Score=138.65  Aligned_cols=232  Identities=11%  Similarity=-0.009  Sum_probs=136.1

Q ss_pred             HHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccc-
Q psy14801        146 ASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILA-  223 (404)
Q Consensus       146 ~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~-  223 (404)
                      ++..+..+|+ +|+.||++|.|  +|.+..++.++.......+++++|||  +|+++++.+...+++++.++|.+.+.. 
T Consensus        40 ~~~~g~~i~~K~E~~nptGSfK--~R~a~~~i~~a~~~g~~~iv~~SsGN--~g~a~a~~a~~~g~~~~i~~p~~~~~~~  115 (351)
T d1v7ca_          40 ARKKGIRLYAKYEGLNPTGSFK--DRGMTLAVSKAVEGGAQAVACASTGN--TAASAAAYAARAGILAIVVLPAGYVALG  115 (351)
T ss_dssp             HHTTTEEEEEEEGGGSTTSBTH--HHHHHHHHHHHHHTTCSEEEEECSSH--HHHHHHHHHHHHTCEEEEEEETTCSCHH
T ss_pred             hhccCCEEEEEEcCCCCccChH--HHHHHHHHHHHHhcCCCeeeeecccc--HHHHHHHHHhhhcccceeecCCchHHHH
Confidence            3344446777 89999999999  99999999887543334567778899  888999988888999999888775321 


Q ss_pred             ccCCCCCCCCCCCc--cccccCCCCcccccccCccccCcEEecChHHHH----HHHHHHHHhcC-----cEeccchhhHH
Q psy14801        224 QPQSLNDVPENQIS--YNEVEGIGYSFAATTLDRNVIDQWGKCGDKDTF----LMARRLIKSEG-----LLVGGSSGTAM  292 (404)
Q Consensus       224 ~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e~~----~~~~~l~~~~g-----i~~~~~tg~tl  292 (404)
                      ....+.........  ...-+...   ....+.......+....++..+    ....++++|..     +++..++|+++
T Consensus       116 ~~~~~~~~Ga~vi~~~~~~~~~~~---~a~~l~~~~~~~~~~~~~~~~~~g~~t~~~Ei~eQl~~~~d~~~~~~g~gg~~  192 (351)
T d1v7ca_         116 KVAQSLVHGARIVQVEGNFDDALR---LTQKLTEAFPVALVNSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGNAGNI  192 (351)
T ss_dssp             HHHHHHHTTCEEEEEESCHHHHHH---HHHHHHHHSSCEECSTTSHHHHHHHTHHHHHHHHHHSSCCSEEEEECSSSHHH
T ss_pred             HHHhhhcCCCceEeeccccchhhh---hHHHHhhhhccccccccCchhhhhhhhHHHHHHHHHhhhccceeeeecccCCc
Confidence            10001110000000  00000000   0000000000001111122221    23455555543     67777888999


Q ss_pred             HHHHHHHHh------cCCCCeEEEEecCCCCCcc-------ccccc---------h---h--H---HhhcCccCcHHHHH
Q psy14801        293 HVACQAAKS------LRPDQRCVVILADGVRNYL-------TKFIS---------D---E--W---MIEKGFLDEAEELE  342 (404)
Q Consensus       293 ag~~~~lk~------~~~~~~vv~v~~~~~~~~~-------~~~~~---------~---~--~---~~~~~~~~~~~~~~  342 (404)
                      .|.....+.      ..+..+++.+++.+.....       ...+.         +   .  .   ..+....++|+++.
T Consensus       193 ~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~ea~  272 (351)
T d1v7ca_         193 TAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVERPETLATAIRIGNPASWQGAVRAKEESGGVIEAVTDEEIL  272 (351)
T ss_dssp             HHHHHHHHHHHHTTSCSSCCEEEEEEEGGGCHHHHTSCCSSCCCSCGGGCCSSCTTHHHHHHHHHHHTCEEEEECHHHHH
T ss_pred             chhHHHHHHHhhcccccCCcceeeeeccccchhhhcccccCCcccccccccccCcccchhhhhhhccCcEEEEEchHHHH
Confidence            988776553      2456678888876532110       00000         0   0  0   11222346777766


Q ss_pred             Hh-------------ccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchhhccCC
Q psy14801        343 EM-------------IHSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLTKFIS  384 (404)
Q Consensus       343 ~g-------------~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl~~~~~  384 (404)
                      ++             .|||++++++++++++  ++++++||+++||+|.||++++++
T Consensus       273 ~a~~~l~~~eGi~v~pssg~alAa~~~~~~~~~~~~~~~VV~i~tg~G~k~~~~~~~  329 (351)
T d1v7ca_         273 FAYRYLAREEGIFCEPASAAAMAGVFKLLREGRLEPESTVVLTLTGHGLKDPATAER  329 (351)
T ss_dssp             HHHHHHHHHTCCCBCHHHHHHHHHHHHHHHTTCSCSSEEEEEEECBBGGGCGGGGGG
T ss_pred             HHHHHHHHHcCcEECHHHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCcccCHHHHHH
Confidence            53             3899999999999886  567899999999999999998664

>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.29  E-value=5.2e-13  Score=127.58  Aligned_cols=236  Identities=10%  Similarity=-0.004  Sum_probs=136.8

Q ss_pred             HHHHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCC-CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCC
Q psy14801        142 AHRIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGG-KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFG  219 (404)
Q Consensus       142 a~~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~-~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~  219 (404)
                      +.+|.+..+..+|+ +|..||++|.|  +|.+..++..+.+ ....+|+++|+||  +|+++|+.++..|+++++++|..
T Consensus        61 ~~~Ls~~lg~~IylK~E~lnptGS~K--~R~a~~~i~~A~~~G~~~iv~easaGN--~g~a~A~aaa~~Gl~~~I~mp~~  136 (390)
T d1qopb_          61 CQNITAGTRTTLYLKREDLLHGGAHK--TNQVLGQALLAKRMGKSEIIAETGAGQ--HGVASALASALLGLKCRIYMGAK  136 (390)
T ss_dssp             CHHHHTTSSEEEEEEEGGGSTTSBTH--HHHHHHHHHHHHHTTCCEEEEEESSSH--HHHHHHHHHHHHTCEEEEEEEHH
T ss_pred             hHhhhhhhCCEEEEEEecCCcccccc--hhHHHHHHHHHhhcCCceeeeehhHHH--HHHHHHHHHHhccCceEEeeccc
Confidence            45677666666777 99999999999  9999988877753 2567999999999  99999999999999999999876


Q ss_pred             Cccc----------ccCCCCCCCCCCCcc--ccc-------cCCCC-cccccccCc-----cccCcEEecChHHHHHHHH
Q psy14801        220 SILA----------QPQSLNDVPENQISY--NEV-------EGIGY-SFAATTLDR-----NVIDQWGKCGDKDTFLMAR  274 (404)
Q Consensus       220 ~~~~----------~~~~~~~~~~~~~~~--~~~-------~~i~~-~~~~~~~~~-----~~~~~~~~v~d~e~~~~~~  274 (404)
                      .+..          ...++...+......  ...       ..... .+.......     ..+..+..+...|+..+..
T Consensus       137 ~~~~k~~~v~~m~~~GAeVv~v~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~e~~~q~~  216 (390)
T d1qopb_         137 DVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQIL  216 (390)
T ss_dssp             HHHHCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHTTTHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHhcCceEEEecCCchhhhHhHHHHHHHHhhhhhhhhhccccccccccccccccchhhhhcchhHHHHH
Confidence            5321          111111000000000  000       00000 000000000     0001122233344443333


Q ss_pred             HHHH--hcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCC----------------------Cc----------c
Q psy14801        275 RLIK--SEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVR----------------------NY----------L  320 (404)
Q Consensus       275 ~l~~--~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~----------------------~~----------~  320 (404)
                      +..-  -+.++++.|+|++++|+...+++ .+..+++.+.+.+..                      .+          .
T Consensus       217 ~~~g~~pD~vv~~vGgGs~~~G~~~~f~~-~~~~~~ig~ep~~~g~~~~~~~a~~~~g~~g~~~~~~~~~~~~~~g~~~~  295 (390)
T d1qopb_         217 DKEGRLPDAVIACVGGGSNAIGMFADFIN-DTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEE  295 (390)
T ss_dssp             HHHSSCCSEEEEECSSSHHHHHHHGGGTT-CTTSEEEEEEEEETBGGGTBSCCHHHHSEEEEETEEEEEECBCTTSCBCC
T ss_pred             HHcCCccceEEecccccchhhheeccccc-ccceeEeccccccccccccccccccccCcccccccccccccccCCCcccc
Confidence            2211  12277777889999998877655 356778877764210                      00          0


Q ss_pred             ccccch-----------hHHhhc----CccCcHHHHHHh-------------ccchhHHHHHHHHHHhcC-CCCeEEEEE
Q psy14801        321 TKFISD-----------EWMIEK----GFLDEAEELEEM-------------IHSGTAMHVACQAAKSLR-PDQRCVVIL  371 (404)
Q Consensus       321 ~~~~~~-----------~~~~~~----~~~~~~~~~~~g-------------~SsGa~~~~a~~~~~~~~-~~~~iv~i~  371 (404)
                      ...+..           .++.+.    ...++|++++++             .+|++++++|+++++++. ++++||+++
T Consensus       296 ~~s~a~gl~~~~~~~~~~~l~~~g~~~~~~vtD~Ea~~a~~~La~~EGI~~a~Esa~Ava~Ai~~a~~~~~~~~~VVv~l  375 (390)
T d1qopb_         296 SYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNL  375 (390)
T ss_dssp             CCCSSGGGCCSSCCHHHHHHHHTTSSEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHHSTTSCEEEEEEE
T ss_pred             ccccccccccccchhHHHHHHhcCceEEEEECHHHHHHHHHHHHHhcCCeecCchHHHHHHHHHHhhhcCCCCCEEEEEE
Confidence            000101           012221    134677777552             267778899999998764 577888889


Q ss_pred             cCCCcchhhcc
Q psy14801        372 ADGVRNYLTKF  382 (404)
Q Consensus       372 ~D~g~rYl~~~  382 (404)
                      |.+|.+-++++
T Consensus       376 sG~G~kD~~~~  386 (390)
T d1qopb_         376 SGRGDKDIFTV  386 (390)
T ss_dssp             CBBCGGGHHHH
T ss_pred             CCCCccCHHHH
Confidence            99999988764

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.22  E-value=1.4e-12  Score=121.45  Aligned_cols=169  Identities=14%  Similarity=0.169  Sum_probs=109.9

Q ss_pred             HHHHhCCCcEee-cCCCCCCChhhHHhhHHHHHHHHhCCC-----cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcC
Q psy14801        144 RIASQMKNAVVL-DQFRNPNNPLSHYETTAEEILRDTGGK-----VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADP  217 (404)
Q Consensus       144 ~l~~~~~~~~~~-~e~~np~~si~g~~~~a~ei~~q~~~~-----~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p  217 (404)
                      ++.+..+..+|+ +|+.||+||.|  +|.|..++.++.++     ....||+++|||  +|+++|+.++..++++++|+|
T Consensus        21 ~l~~~~g~~i~~K~E~~nptGSfK--dRgA~~~i~~a~~~g~~~~~~~~vv~aSsGN--~g~a~A~~a~~~g~~~~iv~p   96 (320)
T d1z7wa1          21 NVAEGCVGRVAAKLEMMEPCSSVK--DRIGFSMISDAEKKGLIKPGESVLIEPTSGN--TGVGLAFTAAAKGYKLIITMP   96 (320)
T ss_dssp             GGGTTCSSEEEEEEGGGSTTSBTH--HHHHHHHHHHHHHTTSCCTTTCEEEEECSSH--HHHHHHHHHHHHTCEEEEEEE
T ss_pred             CcccccCCEEEEEeCCCCCccCcH--HHHHHHHHHHHHHcCCCCCCCceEEeeCCch--HHHHHHHHHHhhccceEEeeh
Confidence            344444556777 99999999999  99999999887532     246899999999  999999999999999999999


Q ss_pred             CCCcccccCCCCCCCCCCCccccccC----CCC--cccccccCccccCcEEecChHHHH--HHHHHHHHhc-----CcEe
Q psy14801        218 FGSILAQPQSLNDVPENQISYNEVEG----IGY--SFAATTLDRNVIDQWGKCGDKDTF--LMARRLIKSE-----GLLV  284 (404)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~--~~~~~~~~~~~~~~~~~v~d~e~~--~~~~~l~~~~-----gi~~  284 (404)
                      ++.+......+..............+    +..  .......+..+.+++.+..+..+.  ..+.||+++.     .+++
T Consensus        97 ~~~~~~k~~~i~~~Ga~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~~t~~~EI~~q~~~~~D~vv~  176 (320)
T d1z7wa1          97 ASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVS  176 (320)
T ss_dssp             TTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEE
T ss_pred             hhhhhhhhhhhhccCcceEEeeccccccccchhHHHHHHhCCCceecccccccchHHHhhhhHHHHHHHhccCCCCEEEe
Confidence            98864322111111111000000000    000  000001112233333333334442  3456777664     2888


Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14801        285 GGSSGTAMHVACQAAKSLRPDQRCVVILADGV  316 (404)
Q Consensus       285 ~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~  316 (404)
                      ..|||++++|+.+++++.+|..+++.++|.+.
T Consensus       177 ~vGgGg~~~Gi~~~~k~~~~~~~~igve~~~s  208 (320)
T d1z7wa1         177 GIGTGGTITGAGKYLKEQNANVKLYGVEPVES  208 (320)
T ss_dssp             ECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGG
T ss_pred             CCCCCcccchhhhhhhhhhcceeeecccccCC
Confidence            89999999999999999999999999998654

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=6.8e-12  Score=118.48  Aligned_cols=161  Identities=12%  Similarity=0.174  Sum_probs=104.7

Q ss_pred             cEee-cCCCCCCChhhHHhhHHHHHHHHhCC----CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCcccccC
Q psy14801        152 AVVL-DQFRNPNNPLSHYETTAEEILRDTGG----KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILAQPQ  226 (404)
Q Consensus       152 ~~~~-~e~~np~~si~g~~~~a~ei~~q~~~----~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~~~~  226 (404)
                      .+|+ +|+.||+||.|  +|.|..++.++.+    ++...|++++|||  +|+++|+.++..|+++++|+|...+.....
T Consensus        62 ~i~~K~E~~nptGSfK--dRga~~~i~~a~~~g~~~~~~~vv~aSsGN--~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~  137 (355)
T d1jbqa_          62 ELLAKCEFFNAGGSVK--DRISLRMIEDAERDGTLKPGDTIIEPTSGN--TGIGLALAAAVRGYRCIIVMPEKMSSEKVD  137 (355)
T ss_dssp             EEEEEEGGGSTTSBTH--HHHHHHHHHHHHHHTCSCTTCEEEEECSSH--HHHHHHHHHHHHTCEEEEEECSCCCHHHHH
T ss_pred             EEEEEECCCCCccCHH--HHHHHHHHHHHHHcCCcccCceEEEecccc--hhhHHHHHHHhccCCeEEEeeccchHHHHH
Confidence            5777 99999999999  9999999988753    2567899999999  999999999999999999999988632221


Q ss_pred             CCCCCCCCCCc---cccccC-CCC-----cccccccCccccCcEEecChHHH--HHHHHHHHHhc-----CcEeccchhh
Q psy14801        227 SLNDVPENQIS---YNEVEG-IGY-----SFAATTLDRNVIDQWGKCGDKDT--FLMARRLIKSE-----GLLVGGSSGT  290 (404)
Q Consensus       227 ~~~~~~~~~~~---~~~~~~-i~~-----~~~~~~~~~~~~~~~~~v~d~e~--~~~~~~l~~~~-----gi~~~~~tg~  290 (404)
                      .+.........   ...... ...     ..........+.+++.+..+..+  ...+.|++++.     .+++..|||+
T Consensus       138 ~i~~~GA~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql~~~~d~vv~~vG~GG  217 (355)
T d1jbqa_         138 VLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGG  217 (355)
T ss_dssp             HHHHTTCEEEECCC-------CCHHHHHHHHHHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSH
T ss_pred             HHHhcCCeEEEecccccchhhhhhhhHHHHHHHhccccccccccCcccchhhhcccchhhhhhhcCCCCCeeEecccCCc
Confidence            11111111000   000000 000     00000001112222222222232  12356666654     3888889999


Q ss_pred             HHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14801        291 AMHVACQAAKSLRPDQRCVVILADGV  316 (404)
Q Consensus       291 tlag~~~~lk~~~~~~~vv~v~~~~~  316 (404)
                      +++|+.+++++.+++.+|+.++|.+.
T Consensus       218 ~~~Gi~~~lk~~~~~~kii~vep~gs  243 (355)
T d1jbqa_         218 TITGIARKLKEKCPGCRIIGVDPEGS  243 (355)
T ss_dssp             HHHHHHHHHHHHCTTCEEEEEEETTC
T ss_pred             hHHHHHHHHhhcCCcceEEeecccCC
Confidence            99999999999999999999999764

>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.11  E-value=2.5e-11  Score=118.88  Aligned_cols=224  Identities=11%  Similarity=-0.009  Sum_probs=126.9

Q ss_pred             cEee-cCCCCCCChhhHHhhHHHHHHHHhC-----CCcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcCCCCccc-c
Q psy14801        152 AVVL-DQFRNPNNPLSHYETTAEEILRDTG-----GKVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADPFGSILA-Q  224 (404)
Q Consensus       152 ~~~~-~e~~np~~si~g~~~~a~ei~~q~~-----~~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p~~~~~~-~  224 (404)
                      .+|+ +|+.||++|.|  ||.+..++.++.     ......|++++|||  +|+++|+.++..|++++++.|.+.... .
T Consensus       139 ~ly~K~E~~nPTGSfK--DRga~~~i~~a~~~~~~~~~~~~vv~aSsGN--tg~AlAa~aa~~Gi~~~I~~P~~~~s~~k  214 (477)
T d1e5xa_         139 DLWVKHCGISHTGSFK--DLGMTVLVSQVNRLRKMKRPVVGVGCASTGD--TSAALSAYCASAGIPSIVFLPANKISMAQ  214 (477)
T ss_dssp             SEEEEETTSSTTSBTT--HHHHHHHHHHHHHHHHTTCCCCEEEECCCSH--HHHHHHHHHHHHTCCEEEEEEGGGCCHHH
T ss_pred             eEEEEECCCCCCcccH--HHHHHHHHHHHHHhccccCCcceEEeecCch--HHHHHHHHHHhcCCCeEEEeCCCCcCHHH
Confidence            5676 99999999999  998877776553     12456789999999  899999999999999999999764211 1


Q ss_pred             cCCCCCCCCCCCccccccCC-CCc-cccccc---CccccCcEEecChHHHHH-HHHHHHHhcC------cEeccchhhHH
Q psy14801        225 PQSLNDVPENQISYNEVEGI-GYS-FAATTL---DRNVIDQWGKCGDKDTFL-MARRLIKSEG------LLVGGSSGTAM  292 (404)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~i-~~~-~~~~~~---~~~~~~~~~~v~d~e~~~-~~~~l~~~~g------i~~~~~tg~tl  292 (404)
                      ...........   ....+. ... .....+   ...+..+..+....+... .+.+++++.+      +++..++|+++
T Consensus       215 ~~~~~~~GA~V---~~v~g~~dda~~~~~e~a~~~~~~~~~~~N~~~~~g~~t~~~Ei~~ql~~~~pd~v~vp~G~gg~~  291 (477)
T d1e5xa_         215 LVQPIANGAFV---LSIDTDFDGCMKLIREITAELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNI  291 (477)
T ss_dssp             HHHHHHTTCEE---EEEESCHHHHHHHHHHHHHHSCEEEGGGSHHHHHHHHTHHHHHHHHHTTSCCCSEEEEECSSTHHH
T ss_pred             HHHHHhcCccc---cccccCchhhHHHhhhhccccceecccccccccchhhhHHHHHHHHhhccccceeeeecccCCcch
Confidence            00000000000   000000 000 000000   000111111211222222 2455665543      56666788889


Q ss_pred             HHHHHHHHhc------CCCCeEEEEecCCCCCcc-----------c--------ccc--c-----hhH---Hhh---cCc
Q psy14801        293 HVACQAAKSL------RPDQRCVVILADGVRNYL-----------T--------KFI--S-----DEW---MIE---KGF  334 (404)
Q Consensus       293 ag~~~~lk~~------~~~~~vv~v~~~~~~~~~-----------~--------~~~--~-----~~~---~~~---~~~  334 (404)
                      .|+.+.+++.      .+-.+++++.+.+.....           .        ..+  +     +..   +..   ...
T Consensus       292 ~g~~~g~~~l~~~G~~~~~P~~~~v~a~~~~~~~~~~~~g~~~~~~~~~~~T~a~~i~i~~p~~~~~~l~~~~~~~g~~~  371 (477)
T d1e5xa_         292 YAFYKGFKMCQELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQIGDPVSIDRAVYALKKCNGIVE  371 (477)
T ss_dssp             HHHHHHHHHHHHTTSSSCCCEEEEEEETTSSTHHHHHHTTTTTCCC----------------CCCHHHHHHHHHTTCEEE
T ss_pred             hhHHHHHHHHhhcCccccCceEEEEeccchhhHHHHHHcCCCcccccccccccccccccccccchHHHHHHHhhcCceEE
Confidence            9888776642      222366777765532110           0        000  0     000   011   112


Q ss_pred             cCcHHHHHHh------------ccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchhhcc
Q psy14801        335 LDEAEELEEM------------IHSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLTKF  382 (404)
Q Consensus       335 ~~~~~~~~~g------------~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl~~~  382 (404)
                      .++|+++..+            .|||++++++.+++++  ++++.+||+++|.+|.||.++.
T Consensus       372 ~VsDeei~~a~~l~~~eGi~vePssA~alAal~kl~~~g~i~~~~~VVvl~Tg~glKf~~~~  433 (477)
T d1e5xa_         372 EATEEELMDAMAQADSTGMFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSK  433 (477)
T ss_dssp             EECHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTSSCTTCCEEEEECBCGGGGHHHH
T ss_pred             ecCHHHHHHHHHHHHHCCcEEChHHHHHHHHHHHHHHhCCCCCCCcEEEEeCcCcccCHHHH
Confidence            3566666542            2889999999999886  5688999999999999997763

>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.11  E-value=1.8e-10  Score=106.88  Aligned_cols=226  Identities=12%  Similarity=0.015  Sum_probs=132.6

Q ss_pred             HHHHHhCCCcEee-cCCCC--CCChhhHHhhHHHHHHHHhCC--CcCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEcC
Q psy14801        143 HRIASQMKNAVVL-DQFRN--PNNPLSHYETTAEEILRDTGG--KVDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGADP  217 (404)
Q Consensus       143 ~~l~~~~~~~~~~-~e~~n--p~~si~g~~~~a~ei~~q~~~--~~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~p  217 (404)
                      .++.++.+..+|+ +|..|  |.+|.|  +|.+..++.++..  ....+++.+++||  .|.++|..++..+++++.+.|
T Consensus        28 ~~L~~~~G~~v~iK~Ed~~~~~tgS~K--~R~~~~~i~~a~~~g~~~~~~~~~s~gN--~g~a~A~~a~~~g~~~~i~~~  103 (325)
T d1j0aa_          28 PNISREIGADVYIKRDDLTGLGIGGNK--IRKLEYLLGDALSKGADVVITVGAVHSN--HAFVTGLAAKKLGLDAILVLR  103 (325)
T ss_dssp             HHHHHHHTSEEEEEEGGGSCSTTCSTH--HHHHHHHHHHHHHTTCSEEEEECCTTCH--HHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHhHHHHCCEEEEEecCCCCCCcchhH--HHHHHHHHHHHHHCCCCeeEEEeeCcch--HHHHHHHHHhhhcCceEEEee
Confidence            3455544556787 66555  889999  9998888876542  2455667888999  888899999999999999988


Q ss_pred             CCCcccccCCC---CC-----CCCCCCc--cccccCCCCcccccccCccccCcEEecChHH----HHHHHHHHHHhcC--
Q psy14801        218 FGSILAQPQSL---ND-----VPENQIS--YNEVEGIGYSFAATTLDRNVIDQWGKCGDKD----TFLMARRLIKSEG--  281 (404)
Q Consensus       218 ~~~~~~~~~~~---~~-----~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~v~d~e----~~~~~~~l~~~~g--  281 (404)
                      ...+......+   ..     .......  ................+..+..+.  ..++.    ....+.++.++.+  
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~e~~~~~~~~  181 (325)
T d1j0aa_         104 GKEELKGNYLLDKIMGIETRVYDAKDSFELMKYAEEIAEELKREGRKPYVIPPG--GASPIGTLGYVRAVGEIATQSEVK  181 (325)
T ss_dssp             SCCCSCHHHHHHHHTTCEEEEESCCSTTTHHHHHHHHHHHHTTSSCCEEEECGG--GCSHHHHTHHHHHHHHHHHHCCCC
T ss_pred             cccccchhhhhccccceeEEeccCcccccchHHHHHHHHHHHhhccCceeeecC--CCccccccccchhhcccccccccc
Confidence            76643211000   00     0000000  000000000000000000000000  11111    2344555555544  


Q ss_pred             ---cEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCccccccchh--------------H-----HhhcCccCcHH
Q psy14801        282 ---LLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKFISDE--------------W-----MIEKGFLDEAE  339 (404)
Q Consensus       282 ---i~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~~~~~~--------------~-----~~~~~~~~~~~  339 (404)
                         +++..|||+++.|+...++...++.+++.+.+.....+......+.              +     ..+..+.+.|+
T Consensus       182 ~d~vv~~~G~G~~~~gi~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~  261 (325)
T d1j0aa_         182 FDSIVVAAGSGGTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTSKLDNLIKEAAELLGVKVEVRPELYDYSFGEYGKITG  261 (325)
T ss_dssp             CSEEEEEESSSHHHHHHHHHHHHTTCCCEEEEEECSSCSSSHHHHHHHHHHHHHHHTTCCCCSCCEEEECSTTSTTCCCH
T ss_pred             cceeecccccchhhhhHHHHHHhhCccccccccccccchhhhhhhhcccccccccccCCCcccchhhhhceecceeechH
Confidence               7888899999999999999999999999999877654333211100              0     11122445555


Q ss_pred             HHHHh--------------ccchhHHHHHHHHHHhcCCCCeEEEEEcCCC
Q psy14801        340 ELEEM--------------IHSGTAMHVACQAAKSLRPDQRCVVILADGV  375 (404)
Q Consensus       340 ~~~~g--------------~SsGa~~~~a~~~~~~~~~~~~iv~i~~D~g  375 (404)
                      +++++              .|||++++++++++++...+++||+|..= |
T Consensus       262 e~~~a~~~l~~~eGI~~eP~~s~~a~~~l~~~~~~~~~~~~vv~i~tG-G  310 (325)
T d1j0aa_         262 EVAQIIRKVGTREGIILDPVYTGKAFYGLVDLARKGELGEKILFIHTG-G  310 (325)
T ss_dssp             HHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCSCSEEEEEECC-C
T ss_pred             HHHHHHHHHHHHcCCcCChhhHHHHHHHHHHHHHcCCCCCeEEEEECC-c
Confidence            55442              27899999999999887778998888665 5

>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Pseudomonas sp., strain ACP [TaxId: 306]

Probab=98.81  E-value=1.8e-08  Score=92.66  Aligned_cols=228  Identities=9%  Similarity=-0.031  Sum_probs=124.8

Q ss_pred             HHHHHhCC--CcEee-cCCCCCCChhhH-HhhHHHHHHHHhCC-C-cCEEEEccCCChhHHHHHHHHHHhCCCcEEEEEc
Q psy14801        143 HRIASQMK--NAVVL-DQFRNPNNPLSH-YETTAEEILRDTGG-K-VDMIVLGCGTGGTASGIGRKIKEKCPSCKLVGAD  216 (404)
Q Consensus       143 ~~l~~~~~--~~~~~-~e~~np~~si~g-~~~~a~ei~~q~~~-~-~~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V~  216 (404)
                      .+|.+..+  ..+|+ +|+.||.+|.+| .+|.+..++.++.+ . ...++++.++||  +|+++|+.++..++++++++
T Consensus        22 ~~L~~~lg~~~~i~~K~E~~~ptgS~~gnK~R~~~~~i~~a~~~g~~~v~~~~~s~gN--~g~A~A~~a~~~g~~~~i~~   99 (338)
T d1tyza_          22 ARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLVSIGGIQSN--QTRQVAAVAAHLGMKCVLVQ   99 (338)
T ss_dssp             HHHHHHTTSSSEEEEEEGGGSCSSTTCCHHHHHHHHHHHHHHHTTCCEEEEEEETTCH--HHHHHHHHHHHHTCEEEEEE
T ss_pred             HHHHHHHCCCCEEEEEECCCCCCcccccCHHHHHHHHHHHHHHCCCCeEEEEccCCch--HHHHHHHHHhhccCcEEEEE
Confidence            44555443  35777 899999999832 39988888777642 2 344557889999  89999999999999999999


Q ss_pred             CCCCcccccCCCCC--------CCCC----CCccc-----ccc--------CCCCcc-cccccCccccCcEEecChHHHH
Q psy14801        217 PFGSILAQPQSLND--------VPEN----QISYN-----EVE--------GIGYSF-AATTLDRNVIDQWGKCGDKDTF  270 (404)
Q Consensus       217 p~~~~~~~~~~~~~--------~~~~----~~~~~-----~~~--------~i~~~~-~~~~~~~~~~~~~~~v~d~e~~  270 (404)
                      |...+.........        ....    .....     ...        .....+ .+..... ...........+..
T Consensus       100 p~~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  178 (338)
T d1tyza_         100 ENWVNYSDAVYDRVGNIQMSRILGADVRLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSD-HPLGGLGFVGFAEE  178 (338)
T ss_dssp             ECCSSCCCTTTTTSHHHHHHHHTTCEEECCCC-------CHHHHHHHHHHHTTCCEEEECGGGTS-STTTTTHHHHHHHH
T ss_pred             CCCcchhhhhhhhccccceeeeeccccccccCCcchhHHHHHHHHHhhhhhcccceeeecccCcc-CccccccccchHHH
Confidence            98764322111110        0000    00000     000        000000 0000000 00000000011111


Q ss_pred             HHHHHHHHh-----cCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCccccc------------------cchh
Q psy14801        271 LMARRLIKS-----EGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKF------------------ISDE  327 (404)
Q Consensus       271 ~~~~~l~~~-----~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~~------------------~~~~  327 (404)
                        .......     +.+++..+||++++|+...++.......+..+.+.....+....                  ....
T Consensus       179 --~~~~~~~~~~~~d~iv~~~G~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (338)
T d1tyza_         179 --VRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKPAQTREQITRIARQTAEKVGLERDIMRAD  256 (338)
T ss_dssp             --HHHHHHHHTSCCSEEEEEESSSHHHHHHHHHHHTTTCGGGEEEEECSSCHHHHHHHHHHHHHHHHHHHTCSSCCCGGG
T ss_pred             --HHHHHHhcCCCccEEEEeecChhHHHHHHHHHHHHhhhhcccceeeccchhhhccccccccccccccccccCcccchh
Confidence              1111111     23788889999999999999988877888888776532111000                  0000


Q ss_pred             H-----HhhcCccCcHHHHHHh--------------ccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCc
Q psy14801        328 W-----MIEKGFLDEAEELEEM--------------IHSGTAMHVACQAAKS--LRPDQRCVVILADGVR  376 (404)
Q Consensus       328 ~-----~~~~~~~~~~~~~~~g--------------~SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~  376 (404)
                      +     ..+..+.++|+++.++              .+||+++++..+++++  ++++++||+|. -+|.
T Consensus       257 ~~~~~~~~~~~~~v~d~ei~~a~~~l~~~eGI~~eP~~s~~a~a~l~~~~~~~~~~~g~~Vv~i~-TGG~  325 (338)
T d1tyza_         257 VVLDERFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLYAH-LGGV  325 (338)
T ss_dssp             CEEECTTSCSBTTBCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCSCTTCEEEEEE-CCCG
T ss_pred             hhhhhhcccceEEEChHHHHHHHHHHHHHhCCcCChHHHHHHHHHHHHHHhcCCCCCcCeEEEEE-CCch
Confidence            0     1122344566665443              2678888888888764  46789998876 5564

>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Yeast (Hansenula saturnus) [TaxId: 4906]

Probab=98.74  E-value=6.9e-09  Score=95.93  Aligned_cols=235  Identities=12%  Similarity=0.003  Sum_probs=126.5

Q ss_pred             HHHHHHhCC--CcEee-cCCCCCCChhhH-HhhHHHHHHHHhCC-Cc-CEEEEccCCChhHHHHHHHHHHhCCCcEEEEE
Q psy14801        142 AHRIASQMK--NAVVL-DQFRNPNNPLSH-YETTAEEILRDTGG-KV-DMIVLGCGTGGTASGIGRKIKEKCPSCKLVGA  215 (404)
Q Consensus       142 a~~l~~~~~--~~~~~-~e~~np~~si~g-~~~~a~ei~~q~~~-~~-~~vvv~~gsG~~~~Gi~la~~~~~~~~~vi~V  215 (404)
                      +.+|++..+  ..+|+ +|..||.+|.+| .+|-+..++.++.+ .. ..+++.+++||  .|.++|+.++..+++++.+
T Consensus        21 ~~~L~~~lg~~~~i~~K~E~~~p~GSf~gnK~R~~~~~i~~a~~~g~~~i~~~~as~gN--~g~a~A~~a~~~g~~~~i~   98 (341)
T d1f2da_          21 LNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLVSIGGRQSN--QTRMVAALAAKLGKKCVLI   98 (341)
T ss_dssp             CHHHHHHTTTCSEEEEEEGGGSCSSTTCCHHHHHHTTTHHHHHHSCCSEEEEEEETTCH--HHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHCCCCEEEEEECCCCCCCccccChHHHHHHHHHHHHHCCCCEEEEEccCcch--HHHHHHHHHHHhcCceEEE
Confidence            345555543  36777 899999998822 28888777766542 33 44557888999  8899999999999999999


Q ss_pred             cCCCCcccccCCCCCCCCCCC--------ccccccC---CCC-----------------c-ccccccC-ccccCcEEecC
Q psy14801        216 DPFGSILAQPQSLNDVPENQI--------SYNEVEG---IGY-----------------S-FAATTLD-RNVIDQWGKCG  265 (404)
Q Consensus       216 ~p~~~~~~~~~~~~~~~~~~~--------~~~~~~~---i~~-----------------~-~~~~~~~-~~~~~~~~~v~  265 (404)
                      +|...+...............        .......   ...                 . ..+.... .......+...
T Consensus        99 ~p~~~~~~k~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (341)
T d1f2da_          99 QEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYGGLGFVGF  178 (341)
T ss_dssp             EECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECCCCCCSSCCHHHHHHHHHHHHTTCCEEEECGGGTTSTTTTTHHHHH
T ss_pred             ccCCCCHHHHHHHHHhhccceechhhccccccccCCchhhHHHHHHHHHHHHHHhhccCccccCCcccccccchhhehhh
Confidence            998875432211111000000        0000000   000                 0 0000000 00000000000


Q ss_pred             hHHHHHHHHHHH-HhcCcEeccchhhHHHHHHHHHHhcCCCCeEEEEecCCCCCccccc---------------------
Q psy14801        266 DKDTFLMARRLI-KSEGLLVGGSSGTAMHVACQAAKSLRPDQRCVVILADGVRNYLTKF---------------------  323 (404)
Q Consensus       266 d~e~~~~~~~l~-~~~gi~~~~~tg~tlag~~~~lk~~~~~~~vv~v~~~~~~~~~~~~---------------------  323 (404)
                      ..++........ .-+.+++..+||++++|+...+++..+..+++.+.......+....                     
T Consensus       179 ~~~~~~~~~~~~~~~~~~v~~~G~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (341)
T d1f2da_         179 ADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQTLRIANNTAKLIGVEHEFKDF  258 (341)
T ss_dssp             HHHHHHHHHHHTCCCSEEEEEESSSHHHHHHHHHHGGGTCGGGEEEEECSSCHHHHHHHHHHHHHHHHHHHTCCCCCSCC
T ss_pred             hHHHHHHHhhccCCceEEEEecccccchhhHHHHHHHhcccccccccccccchhhhhhhhhccccccccccccCCCcccc
Confidence            011111111111 1123777888999999999999998877888888876542111100                     


Q ss_pred             -cchhHHhhcCccCcHHHHHHhc--------------cchhHHHHHHHHHHh--cCCCCeEEEEEcCCCcchhh
Q psy14801        324 -ISDEWMIEKGFLDEAEELEEMI--------------HSGTAMHVACQAAKS--LRPDQRCVVILADGVRNYLT  380 (404)
Q Consensus       324 -~~~~~~~~~~~~~~~~~~~~g~--------------SsGa~~~~a~~~~~~--~~~~~~iv~i~~D~g~rYl~  380 (404)
                       +.+. ..+..+.++|+++.+++              +||+++++..++.++  ++++++||+|.. +|.-.+.
T Consensus       259 ~~~~~-~~~~~~~v~d~e~~~a~~~la~~eGI~veP~ys~~a~agl~~l~~~~~i~~~~~Vv~i~T-GG~~~~~  330 (341)
T d1f2da_         259 TLDTR-FAYPCYGVPNEGTIEAIRTCAEQEGVLTDPVYEGKSMQGLIALIKEDYFKPGANVLYVHL-GGAPALS  330 (341)
T ss_dssp             CEECT-TSTTBTTBCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCSCTTCEEEEEEC-CCGGGGG
T ss_pred             ccccc-cceeEEEEChHHHHHHHHHHHHHhCcccChhhhHHHHHHHHHHHHcCCCCCcCeEEEEEC-CCcccHH
Confidence             0011 11122445666655532              478899888888765  567889887754 3544443

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.18  E-value=0.043  Score=43.91  Aligned_cols=61  Identities=20%  Similarity=0.188  Sum_probs=49.3

Q ss_pred             HHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q psy14801         64 DAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQ  127 (404)
Q Consensus        64 ~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~  127 (404)
                      ++.++..+++|++|+..++|.-|...+..++.+|.+++++-   ..+.|++.++.+|++...+.
T Consensus        17 ~a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~---~~~~r~~~a~~~ga~~~~~~   77 (170)
T d1e3ja2          17 HACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTA---RSPRRLEVAKNCGADVTLVV   77 (170)
T ss_dssp             HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEE---SCHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHhCCCCCCEEEEEcccccchhhHhhHhhhcccccccc---hHHHHHHHHHHcCCcEEEec
Confidence            34455567889998888999999999999999999876663   46789999999999766553

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.32  Score=38.55  Aligned_cols=63  Identities=24%  Similarity=0.313  Sum_probs=51.7

Q ss_pred             HHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q psy14801         64 DAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQN  128 (404)
Q Consensus        64 ~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~  128 (404)
                      ++.++..++||++|+..+.|.-|...+..++.+|.+-++++.  ..+.|++..+.+||+.+....
T Consensus        17 ~a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d--~~~~rl~~a~~~Ga~~~~~~~   79 (171)
T d1pl8a2          17 HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTD--LSATRLSKAKEIGADLVLQIS   79 (171)
T ss_dssp             HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCSEEEECS
T ss_pred             HHHHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEecc--CCHHHHHHHHHhCCccccccc
Confidence            456677788999999999999999999999999996555553  457889999999998776654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.96  E-value=0.063  Score=42.70  Aligned_cols=60  Identities=17%  Similarity=0.223  Sum_probs=48.4

Q ss_pred             HHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q psy14801         65 AETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQ  127 (404)
Q Consensus        65 a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~  127 (404)
                      +.++...+||++|+...+|.-|...+..++.+|.+++++   ...+.|++..+.+|++.+...
T Consensus        19 al~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~---~~~~~~~~~a~~~Ga~~~i~~   78 (166)
T d1llua2          19 GLKQTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAI---DIDDAKLELARKLGASLTVNA   78 (166)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEE---ESCHHHHHHHHHTTCSEEEET
T ss_pred             HHHHhCCCCCCEEEEeeccccHHHHHHHHHHcCCcccee---cchhhHHHhhhccCccccccc
Confidence            334456788899988999999999999999999886666   346788999999999766543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.08  E-value=0.13  Score=40.67  Aligned_cols=59  Identities=25%  Similarity=0.266  Sum_probs=48.4

Q ss_pred             HhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q psy14801         67 TAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQN  128 (404)
Q Consensus        67 ~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~  128 (404)
                      ++...+||++|+...+|.-|...+..++..|.+++++   ..++.|++.++.+|++.+....
T Consensus        21 ~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~---~~~~~r~~~~k~~Ga~~~~~~~   79 (168)
T d1rjwa2          21 KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAV---DIGDEKLELAKELGADLVVNPL   79 (168)
T ss_dssp             HHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEE---CSCHHHHHHHHHTTCSEEECTT
T ss_pred             HHhCCCCCCEEEEeecccchhhhhHHHhcCCCeEecc---CCCHHHhhhhhhcCcceecccc
Confidence            3345778899988899999999999999999986665   3567899999999998876654

>d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: PK C-terminal domain-like
family: MTH1675-like
domain: Hypothetical protein AF0103
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.00  E-value=0.21  Score=39.75  Aligned_cols=76  Identities=26%  Similarity=0.352  Sum_probs=58.7

Q ss_pred             CCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecC---------CCCHHHHHHHHH
Q psy14801         48 NPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPM---------KMSKEKVYTMKA  118 (404)
Q Consensus        48 ~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~---------~~~~~k~~~l~~  118 (404)
                      +|.-.+-+..+...+.+|.+.|..   ..||.+|+|.++..++-+.  .|++.++|-..         ..+++.++.|+.
T Consensus        11 ~~G~~NT~~~l~~a~~rA~Elgi~---~iVvAStsG~TA~~~~e~~--~g~~lvvVth~~GF~~pg~~e~~~e~~~~L~~   85 (190)
T d1vp8a_          11 KPGRENTEETLRLAVERAKELGIK---HLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRK   85 (190)
T ss_dssp             SCSGGGHHHHHHHHHHHHHHHTCC---EEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHcCCC---eEEEEeCCcHHHHHHHHHh--cCCeEEEEecccCCCCCCcccCCHHHHHHHHH
Confidence            455566778888889999998861   3456666999998877766  48998887632         478899999999


Q ss_pred             cCCEEEEeCC
Q psy14801        119 LGAKIIRTQN  128 (404)
Q Consensus       119 ~Ga~v~~v~~  128 (404)
                      .|.+|+.-..
T Consensus        86 ~G~~V~t~tH   95 (190)
T d1vp8a_          86 RGAKIVRQSH   95 (190)
T ss_dssp             TTCEEEECCC
T ss_pred             cCCEEEEecc
Confidence            9999987654

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.99  E-value=0.058  Score=43.12  Aligned_cols=59  Identities=17%  Similarity=0.114  Sum_probs=46.6

Q ss_pred             HHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801         64 DAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR  125 (404)
Q Consensus        64 ~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~  125 (404)
                      .+.++...+||++|+..++|..|...+.+++.+|.+++++-.   ++.|++.++.+||+-+.
T Consensus        18 ~al~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~---~~~k~~~a~~lGa~~~i   76 (168)
T d1piwa2          18 SPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISR---SSRKREDAMKMGADHYI   76 (168)
T ss_dssp             HHHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEES---SSTTHHHHHHHTCSEEE
T ss_pred             HHHHHhCcCCCCEEEEECCCCcchhHHHHhhhcccccccccc---chhHHHHhhccCCcEEe
Confidence            344556678999998889999999999999999999776533   34578888999996544

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.97  E-value=0.14  Score=41.89  Aligned_cols=62  Identities=23%  Similarity=0.310  Sum_probs=50.9

Q ss_pred             HHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q psy14801         65 AETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQN  128 (404)
Q Consensus        65 a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~  128 (404)
                      +.++..++||++|+..++|.-|...+..++.+|...++++.  .++.|++..+.+|++.+..+.
T Consensus        17 a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d--~~~~rl~~a~~~Ga~~~~~~~   78 (195)
T d1kola2          17 GAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGD--LNPARLAHAKAQGFEIADLSL   78 (195)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCEEEETTS
T ss_pred             HHHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeec--ccchhhHhhhhccccEEEeCC
Confidence            45567789999998889999999999999999997666654  357899999999999876543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.62  E-value=0.42  Score=38.19  Aligned_cols=59  Identities=20%  Similarity=0.219  Sum_probs=46.5

Q ss_pred             HhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q psy14801         67 TAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQ  127 (404)
Q Consensus        67 ~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~  127 (404)
                      +.+..+||++|+..++|..|......++.+|.+-++++  ..++.|++.++.+||+.++-.
T Consensus        22 ~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~--~~~~~~~~~a~~lGa~~vi~~   80 (182)
T d1vj0a2          22 EYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVI--AGSPNRLKLAEEIGADLTLNR   80 (182)
T ss_dssp             TCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEE--ESCHHHHHHHHHTTCSEEEET
T ss_pred             HHhCCCCCCEEEEECCCccchhheeccccccccccccc--ccccccccccccccceEEEec
Confidence            45678899999888899999999999999998533333  236788999999999766544

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=93.36  E-value=0.49  Score=37.82  Aligned_cols=59  Identities=25%  Similarity=0.316  Sum_probs=48.0

Q ss_pred             HhCCCCCCCEEEe-cCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q psy14801         67 TAGVLKPGYTIVE-PSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQN  128 (404)
Q Consensus        67 ~~g~~~~~~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~  128 (404)
                      +.+.++||++|+. +.+|.-|.++...|+..|.+++.+..   ++.|.+.++.+|++.++...
T Consensus        23 ~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~---~~~~~~~~~~~Ga~~vi~~~   82 (182)
T d1v3va2          23 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKIAYLKQIGFDAAFNYK   82 (182)
T ss_dssp             TTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEETT
T ss_pred             HHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCC---CHHHHHHHHhhhhhhhcccc
Confidence            4566788888654 66789999999999999999888763   56889999999998776654

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=93.34  E-value=0.076  Score=36.54  Aligned_cols=57  Identities=28%  Similarity=0.337  Sum_probs=43.0

Q ss_pred             HHHHHHhCCCCCCCE-EEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q psy14801         62 IEDAETAGVLKPGYT-IVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGA  121 (404)
Q Consensus        62 l~~a~~~g~~~~~~~-vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga  121 (404)
                      +......+..+++++ +|...+|.-|......++.+|++++....   +++|.+.++.+||
T Consensus        20 l~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~---s~~k~~~~~~lGA   77 (77)
T d1o8ca2          20 VMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSG---RESTHEYLKSLGA   77 (77)
T ss_dssp             HHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEES---CGGGHHHHHHHTE
T ss_pred             HHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEEC---CHHHHHHHHHCCC
Confidence            334455566666675 46677899999999999999999887753   5678888888886

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=93.12  E-value=0.16  Score=40.27  Aligned_cols=60  Identities=23%  Similarity=0.151  Sum_probs=48.3

Q ss_pred             HHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q psy14801         64 DAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT  126 (404)
Q Consensus        64 ~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v  126 (404)
                      .+.++..++||++|+..++|.-|...+..++.+|.+.+++..   +..|++.++.+|++.+..
T Consensus        21 ~al~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~---~~~~~~~a~~lGad~~i~   80 (168)
T d1uufa2          21 SPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTT---SEAKREAAKALGADEVVN   80 (168)
T ss_dssp             HHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEES---SGGGHHHHHHHTCSEEEE
T ss_pred             HHHHHhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhcc---chhHHHHHhccCCcEEEE
Confidence            445667889999998888999999999999999999887543   345677889999987654

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=92.74  E-value=0.41  Score=38.03  Aligned_cols=57  Identities=18%  Similarity=0.169  Sum_probs=46.1

Q ss_pred             HhCCCCCCCEEEe-cCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q psy14801         67 TAGVLKPGYTIVE-PSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT  126 (404)
Q Consensus        67 ~~g~~~~~~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v  126 (404)
                      +.+.++||++|+. ..+|..|..+...|+..|.++++..   .++.|.+.++.+||+-++-
T Consensus        22 ~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~---~s~~k~~~~~~lGa~~vi~   79 (179)
T d1qora2          22 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTV---GTAQKAQSALKAGAWQVIN   79 (179)
T ss_dssp             TTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEE---SSHHHHHHHHHHTCSEEEE
T ss_pred             HHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecc---cchHHHHHHHhcCCeEEEE
Confidence            4567889998755 5677899999999999999988775   4678889999999986553

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.45  E-value=0.62  Score=36.82  Aligned_cols=57  Identities=19%  Similarity=0.257  Sum_probs=45.9

Q ss_pred             HHhCCCCCCCEEEecC-CChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801         66 ETAGVLKPGYTIVEPS-SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR  125 (404)
Q Consensus        66 ~~~g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~  125 (404)
                      .+.+.++||++|+..+ +|..|.+....|+.+|+++++...   ++.|++.++.+|++-++
T Consensus        21 ~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~---~~~~~~~~~~~Ga~~vi   78 (174)
T d1yb5a2          21 IHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG---TEEGQKIVLQNGAHEVF   78 (174)
T ss_dssp             HTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEE
T ss_pred             HHHhCCCCCCEEEEEeccccccccccccccccCcccccccc---cccccccccccCccccc
Confidence            3456788899877766 699999999999999999877763   46788999999996554

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=92.42  E-value=0.15  Score=40.90  Aligned_cols=60  Identities=18%  Similarity=0.122  Sum_probs=48.4

Q ss_pred             HHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801         64 DAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR  125 (404)
Q Consensus        64 ~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~  125 (404)
                      .+.++..++||++|+..++|--|...+.+|+.+|.+-++++.  .++.|++..+.+||+-++
T Consensus        18 ~a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d--~~~~r~~~a~~lGa~~~i   77 (174)
T d1jqba2          18 HGAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVG--SRPICVEAAKFYGATDIL   77 (174)
T ss_dssp             HHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEEC--CCHHHHHHHHHHTCSEEE
T ss_pred             HHHHHhCCCCCCEEEEEcCCcchhhhhhhhhccccccccccc--chhhhHHHHHhhCccccc
Confidence            345667889999998889999999999999999986555544  357889999999996554

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.16  E-value=0.21  Score=39.83  Aligned_cols=58  Identities=24%  Similarity=0.309  Sum_probs=45.7

Q ss_pred             HHHhCCCCCCCEEEecC-CChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801         65 AETAGVLKPGYTIVEPS-SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR  125 (404)
Q Consensus        65 a~~~g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~  125 (404)
                      +.+++.++||++|+..+ +|.-|.+...+|+.+|.+++++..   ++.|++.++.+|++.+.
T Consensus        19 al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~---~~~~~~~~~~lGa~~~i   77 (171)
T d1iz0a2          19 ALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAAS---RPEKLALPLALGAEEAA   77 (171)
T ss_dssp             HHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEES---SGGGSHHHHHTTCSEEE
T ss_pred             HHHHhCCCCCCEEEEEeccccchhhhhhhhcccccccccccc---cccccccccccccceee
Confidence            44567788999987755 699999999999999998777653   35677888999997554

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.55  E-value=0.39  Score=37.89  Aligned_cols=60  Identities=20%  Similarity=0.214  Sum_probs=46.7

Q ss_pred             HHHhCCCCCCCEEEecC-CChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q psy14801         65 AETAGVLKPGYTIVEPS-SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT  126 (404)
Q Consensus        65 a~~~g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v  126 (404)
                      +.++..++|+++|+..+ +|..|..++..++..|...+++...  .+.|++.++.+|++.+.-
T Consensus        19 al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~--~~~~~~~~~~~Ga~~~i~   79 (170)
T d1jvba2          19 AVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV--REEAVEAAKRAGADYVIN   79 (170)
T ss_dssp             HHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEES--SHHHHHHHHHHTCSEEEE
T ss_pred             HHHHhCCCCCCEEEEEeccccceeeeeeccccccccccccccc--chhhHHHHHHcCCceeec
Confidence            44566788888887777 7999999999999999866666543  478899999999976544

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.40  E-value=0.53  Score=37.32  Aligned_cols=58  Identities=19%  Similarity=0.317  Sum_probs=48.3

Q ss_pred             HHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801         66 ETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR  125 (404)
Q Consensus        66 ~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~  125 (404)
                      ...+..+||++|+..+.|--|...+..|+.+|.+.+++..  .++.|++.++.+|++-++
T Consensus        21 ~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~--~~~~k~~~a~~~Ga~~~i   78 (174)
T d1f8fa2          21 INALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVD--IVESRLELAKQLGATHVI   78 (174)
T ss_dssp             HTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEE--SCHHHHHHHHHHTCSEEE
T ss_pred             HHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeec--cHHHHHHHHHHcCCeEEE
Confidence            5567789999999899999999999999999998877764  357889999999985443

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=91.27  E-value=0.35  Score=38.57  Aligned_cols=59  Identities=24%  Similarity=0.281  Sum_probs=49.4

Q ss_pred             HHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q psy14801         66 ETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT  126 (404)
Q Consensus        66 ~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v  126 (404)
                      .+.+.++||++|+..+.|--|...+..++.+|.+.+++...  ++.|++..+.+|++.+.-
T Consensus        21 ~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~--~~~r~~~a~~~Ga~~~i~   79 (174)
T d1e3ia2          21 INTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDI--NGEKFPKAKALGATDCLN   79 (174)
T ss_dssp             HTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHTTCSEEEC
T ss_pred             HHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeecc--chHHHHHHHHhCCCcccC
Confidence            45678899999999999999999999999999987777654  457889999999976654

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.22  E-value=0.81  Score=36.25  Aligned_cols=57  Identities=21%  Similarity=0.394  Sum_probs=46.3

Q ss_pred             HhCCCCCCCEEEe-cCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q psy14801         67 TAGVLKPGYTIVE-PSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT  126 (404)
Q Consensus        67 ~~g~~~~~~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v  126 (404)
                      +.+.+++|++|+. +.+|..|..+...|+.+|.+.++...   ++.|.+.++.+|++.+.-
T Consensus        19 ~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~---~~~~~~~l~~~Ga~~vi~   76 (183)
T d1pqwa_          19 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAG---SDAKREMLSRLGVEYVGD   76 (183)
T ss_dssp             TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHTTCCSEEEE
T ss_pred             HHhCCCCCCEEEEECCCCCcccccchhhccccccceeeec---cccccccccccccccccc
Confidence            4567888888776 55799999999999999999988863   467889999999986543

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=90.68  E-value=0.41  Score=38.15  Aligned_cols=59  Identities=19%  Similarity=0.185  Sum_probs=49.3

Q ss_pred             HHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q psy14801         66 ETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT  126 (404)
Q Consensus        66 ~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v  126 (404)
                      .+++.++||++|+..+.|--|......|+.+|.+.++.+..  ++.|++..+.+||+-++-
T Consensus        20 ~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~--~~~kl~~a~~lGa~~~i~   78 (174)
T d1p0fa2          20 VNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGT--HKDKFPKAIELGATECLN   78 (174)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECS--CGGGHHHHHHTTCSEEEC
T ss_pred             HHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCC--hHHHHHHHHHcCCcEEEc
Confidence            45678899999998899999999999999999977777654  467888899999986653

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.52  E-value=0.38  Score=38.06  Aligned_cols=58  Identities=21%  Similarity=0.306  Sum_probs=47.2

Q ss_pred             HHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801         66 ETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR  125 (404)
Q Consensus        66 ~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~  125 (404)
                      .+++.++||++|+....|--|......++.+|.+.++....  ++.|++..+.+||+-+.
T Consensus        21 ~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~--~~~k~~~ak~lGa~~~i   78 (176)
T d2fzwa2          21 VNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDI--NKDKFARAKEFGATECI   78 (176)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECS--CGGGHHHHHHHTCSEEE
T ss_pred             HHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcc--cHHHHHHHHHhCCcEEE
Confidence            35678899999988888888888899999999988877643  56778889999987654

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.93  E-value=0.48  Score=37.76  Aligned_cols=59  Identities=25%  Similarity=0.337  Sum_probs=48.5

Q ss_pred             HHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q psy14801         66 ETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT  126 (404)
Q Consensus        66 ~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v  126 (404)
                      .+++.+++|++|+..+.|--|.....+|+.+|..-+|++.  ..+.|++..+.+||+.++-
T Consensus        22 ~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd--~~~~kl~~Ak~~GA~~~in   80 (176)
T d1d1ta2          22 VKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGID--LNKDKFEKAMAVGATECIS   80 (176)
T ss_dssp             HTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEC--SCGGGHHHHHHHTCSEEEC
T ss_pred             HHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEec--CcHHHHHHHHhcCCcEEEC
Confidence            4567789999999999999999999999999986666654  3467888999999986653

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=89.77  E-value=0.5  Score=38.06  Aligned_cols=61  Identities=20%  Similarity=0.233  Sum_probs=47.3

Q ss_pred             HhCCCCCCCEEEe--cCCChHHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeC
Q psy14801         67 TAGVLKPGYTIVE--PSSGNTGIGLAMVAAIKGYKMVVVMPMKM-SKEKVYTMKALGAKIIRTQ  127 (404)
Q Consensus        67 ~~g~~~~~~~vv~--~ssGN~g~a~A~~a~~~G~~~~iv~p~~~-~~~k~~~l~~~Ga~v~~v~  127 (404)
                      +.+.++||++++.  +.+|..|.+....|+.+|.++++++.... .+.+.+.++.+||+.++..
T Consensus        22 ~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~   85 (189)
T d1gu7a2          22 HYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITE   85 (189)
T ss_dssp             SSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEH
T ss_pred             HHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEec
Confidence            3467788875443  56788999999999999999999886543 4567888999999877654

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=89.67  E-value=0.36  Score=38.73  Aligned_cols=60  Identities=27%  Similarity=0.312  Sum_probs=45.9

Q ss_pred             HHHHhCCCCCC-CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q psy14801         64 DAETAGVLKPG-YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT  126 (404)
Q Consensus        64 ~a~~~g~~~~~-~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v  126 (404)
                      ...+.|...++ ..+|...+|.-|.+....|+.+|.+++.+..   ++.|.+.++.+||+.+.-
T Consensus        22 ~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~---~~~k~~~~~~lGad~vi~   82 (177)
T d1o89a2          22 ALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSG---RESTHEYLKSLGASRVLP   82 (177)
T ss_dssp             HHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEES---CGGGHHHHHHHTEEEEEE
T ss_pred             HHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEec---chhHHHHHHhhccccccc
Confidence            33455554443 4577788899999999999999999998764   557778889999987764

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=88.71  E-value=0.49  Score=37.46  Aligned_cols=63  Identities=21%  Similarity=0.257  Sum_probs=47.9

Q ss_pred             HHHHHHHhCCCCCCC-EEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q psy14801         61 MIEDAETAGVLKPGY-TIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT  126 (404)
Q Consensus        61 ~l~~a~~~g~~~~~~-~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v  126 (404)
                      .+....+.|..+++. .+|.+.+|--|.+..-.|+.+|.+++.....   ++|.+.++.+|++.+..
T Consensus        11 a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s---~~k~~~~~~lGad~vi~   74 (167)
T d1tt7a2          11 SVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGN---REAADYLKQLGASEVIS   74 (167)
T ss_dssp             HHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESS---SSTHHHHHHHTCSEEEE
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecC---HHHHHHHHhhcccceEe
Confidence            334455667666554 5677778999999999999999999887653   46788889999987653

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=88.00  E-value=0.85  Score=35.91  Aligned_cols=56  Identities=20%  Similarity=0.235  Sum_probs=45.4

Q ss_pred             CCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q psy14801         70 VLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQ  127 (404)
Q Consensus        70 ~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~  127 (404)
                      .++||++|+..++|.-|...+..++.+|...++++.  .++.|++.++.+|++.+..+
T Consensus        29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~--~~~~k~~~~~~~ga~~~i~~   84 (172)
T d1h2ba2          29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALD--VKEEKLKLAERLGADHVVDA   84 (172)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEE--SSHHHHHHHHHTTCSEEEET
T ss_pred             ccCCCCEEEEeCCChHHHHHHHHHHhhcCccccccc--chhHHHHHHhhcccceeecC
Confidence            467889999899999999999999999987766653  34688999999999765543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=87.81  E-value=1  Score=35.39  Aligned_cols=58  Identities=21%  Similarity=0.286  Sum_probs=45.0

Q ss_pred             HHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q psy14801         66 ETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIR  125 (404)
Q Consensus        66 ~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~  125 (404)
                      .+.+.++||++|+....|--|...+..++.+|-..++.+.  ..+.|++.++.+||+-.+
T Consensus        21 ~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~--~~~~rl~~a~~~GAd~~i   78 (175)
T d1cdoa2          21 VNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVD--LNPDKFEKAKVFGATDFV   78 (175)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEC--SCGGGHHHHHHTTCCEEE
T ss_pred             HHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeec--chHHHHHHHHHcCCcEEE
Confidence            3567789999998888888888888888888887666654  346788889999997654

>d1t57a_ c.49.1.2 (A:) Hypothetical protein MTH1675 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: PK C-terminal domain-like
family: MTH1675-like
domain: Hypothetical protein MTH1675
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.08  E-value=0.9  Score=35.91  Aligned_cols=75  Identities=19%  Similarity=0.224  Sum_probs=53.1

Q ss_pred             CCCCChhhHHHHHHHHHHHHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecC---------CCCHHHHHHHHH
Q psy14801         48 NPTGSLKDRAAWRMIEDAETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPM---------KMSKEKVYTMKA  118 (404)
Q Consensus        48 ~ptGS~K~R~a~~~l~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~---------~~~~~k~~~l~~  118 (404)
                      +|.-.+-+..+...+.+|.+.|..   ..||.+|+|.++..++-+.   .-+.++|-..         ..+++.++.|+.
T Consensus        10 ~~G~~NT~~~l~~a~~ra~elgi~---~iVvAStsG~TA~~~~e~~---~~~lvvVth~~GF~~pg~~e~~~e~~~~L~~   83 (186)
T d1t57a_          10 EPGKENTERVLELVGERADQLGIR---NFVVASVSGETALRLSEMV---EGNIVSVTHHAGFREKGQLELEDEARDALLE   83 (186)
T ss_dssp             SCSGGGHHHHHHHHHHHHHHHTCC---EEEEECSSSHHHHHHHTTC---CSEEEEECCCTTSSSTTCCSSCHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHcCCC---eEEEEeCCcHHHHHHHHhc---CCCEEEEecccCCCCCCCCccCHHHHHHHHH
Confidence            455566778888889999998861   3455666899997765544   3355544421         467889999999


Q ss_pred             cCCEEEEeCC
Q psy14801        119 LGAKIIRTQN  128 (404)
Q Consensus       119 ~Ga~v~~v~~  128 (404)
                      .|.+|+.-..
T Consensus        84 ~G~~V~t~tH   93 (186)
T d1t57a_          84 RGVNVYAGSH   93 (186)
T ss_dssp             HTCEEECCSC
T ss_pred             cCCEEEEecc
Confidence            9999986654

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.00  E-value=0.88  Score=36.24  Aligned_cols=64  Identities=20%  Similarity=0.233  Sum_probs=48.6

Q ss_pred             HHHHHHHHhCCCCCCCE-EEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q psy14801         60 RMIEDAETAGVLKPGYT-IVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT  126 (404)
Q Consensus        60 ~~l~~a~~~g~~~~~~~-vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v  126 (404)
                      ..+....+.|..++|++ +|.+.+|--|.+.--.|+.+|.+++....   ++.|.+.++.+|++.+.-
T Consensus        18 ~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~---s~~k~~~~~~lGa~~vi~   82 (176)
T d1xa0a2          18 LSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTG---KAAEHDYLRVLGAKEVLA   82 (176)
T ss_dssp             HHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEES---CTTCHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecC---chHHHHHHHhcccceeee
Confidence            34444556777777775 46666899999988999999999998764   346778888999987654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=85.12  E-value=1.6  Score=34.29  Aligned_cols=59  Identities=19%  Similarity=0.228  Sum_probs=46.8

Q ss_pred             HHhCCCCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q psy14801         66 ETAGVLKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRT  126 (404)
Q Consensus        66 ~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v  126 (404)
                      .+.+.++||++|+..+.|--|...+..++.+|...++++..  ++.|++.++.+|++-...
T Consensus        21 ~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~--~~~k~~~a~~~Ga~~~i~   79 (176)
T d2jhfa2          21 VKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDI--NKDKFAKAKEVGATECVN   79 (176)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHTTCSEEEC
T ss_pred             HHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecC--cHHHHHHHHHhCCeeEEe
Confidence            45688999999988888888999999999999877776643  457777888888875543

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=84.94  E-value=3.2  Score=33.51  Aligned_cols=66  Identities=24%  Similarity=0.315  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHHHH-hCC-CCCCCEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q psy14801         55 DRAAWRMIEDAET-AGV-LKPGYTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKI  123 (404)
Q Consensus        55 ~R~a~~~l~~a~~-~g~-~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v  123 (404)
                      -+|..+.+..+.+ +|. .-.|.+|+..+-||-|..+|......|.+++++-   ....++.....+|++.
T Consensus         6 a~Gv~~~~~~~~~~~g~~~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d---~d~~~~~~~~~~g~~~   73 (201)
T d1c1da1           6 AVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVAD---TDTERVAHAVALGHTA   73 (201)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEC---SCHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEec---chHHHHHHHHhhcccc
Confidence            3566666665543 453 2467899999999999999999999998887552   2344455555555443

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=84.72  E-value=0.35  Score=33.05  Aligned_cols=49  Identities=12%  Similarity=0.015  Sum_probs=37.4

Q ss_pred             CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q psy14801         75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQN  128 (404)
Q Consensus        75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~  128 (404)
                      ++|-.-++|..|+-++.+|+.+|++++++-|...++...     .-.+++..+-
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~pa~~-----~a~dvIT~e~   50 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVP-----FQQSVITAEI   50 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCGGGSC-----GGGSEEEESS
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCCcccc-----cccceEEEee
Confidence            468888999999999999999999999999875443211     1236666654

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=84.51  E-value=2.7  Score=30.43  Aligned_cols=74  Identities=11%  Similarity=0.116  Sum_probs=47.5

Q ss_pred             CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCCCcEe
Q psy14801         75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMKNAVV  154 (404)
Q Consensus        75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~  154 (404)
                      .+|-.-++|..|+-+|.+|+++|++++++-|...++..     ....+.+..    +|++.+..    .++++....-+.
T Consensus        12 ~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~PA~-----~va~~~i~~----~~~d~~~l----~~~~~~~~~Dvi   78 (111)
T d1kjqa2          12 TRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAM-----HVAHRSHVI----NMLDGDAL----RRVVELEKPHYI   78 (111)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGGG-----GGSSEEEEC----CTTCHHHH----HHHHHHHCCSEE
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCchh-----hcCCeEEEC----CCCCHHHH----HHHHHhhCCceE
Confidence            46888999999999999999999999999887444332     234444443    35664333    333332212234


Q ss_pred             ecCCCCC
Q psy14801        155 LDQFRNP  161 (404)
Q Consensus       155 ~~e~~np  161 (404)
                      .-||.|=
T Consensus        79 T~E~EnI   85 (111)
T d1kjqa2          79 VPEIEAI   85 (111)
T ss_dssp             EECSSCS
T ss_pred             EEEecCc
Confidence            4566664

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.67  E-value=1.3  Score=35.32  Aligned_cols=60  Identities=18%  Similarity=0.237  Sum_probs=41.3

Q ss_pred             hCCCCCC--CEEEecC-CChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q psy14801         68 AGVLKPG--YTIVEPS-SGNTGIGLAMVAAIKGYKMVVVMPMKMSKEKVYTMKALGAKIIRTQN  128 (404)
Q Consensus        68 ~g~~~~~--~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~l~~~Ga~v~~v~~  128 (404)
                      .+.+++|  ++|+..+ +|.-|..+...|+.+|.+.++.+... ++.+....+.+|++.++-..
T Consensus        23 ~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~-~e~~~~l~~~~gad~vi~~~   85 (187)
T d1vj1a2          23 KGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGT-QEKCLFLTSELGFDAAVNYK   85 (187)
T ss_dssp             HSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESS-HHHHHHHHHHSCCSEEEETT
T ss_pred             HhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccch-HHHHhhhhhcccceEEeecc
Confidence            3555665  5665555 79999999999999999877765332 33444455679998776543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=81.65  E-value=2.4  Score=35.56  Aligned_cols=74  Identities=22%  Similarity=0.281  Sum_probs=52.3

Q ss_pred             CEEEecCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCCCCCCChhhHHHHHHHHHHhCC
Q psy14801         75 YTIVEPSSGNTGIGLAMVAAIKGYKMVVVMPMKMS--KEKVYTMKALGAKIIRTQNDKSYDHPEGMIAGAHRIASQMK  150 (404)
Q Consensus        75 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--~~k~~~l~~~Ga~v~~v~~~~~~~~~~~~~~~a~~l~~~~~  150 (404)
                      ..+|+.+++--|.++|..-.+.|.++++.......  +...+.++.+|.+++.++.  +..+.++..+..++..++.+
T Consensus         8 ~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~--D~~~~~~v~~~~~~~~~~~g   83 (259)
T d1ja9a_           8 VALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQA--DISKPSEVVALFDKAVSHFG   83 (259)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEEC--CTTSHHHHHHHHHHHHHHHS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecC--CCCCHHHHHHHHHHHHHHcC
Confidence            45778888889999999999999999876654332  2335667889999988876  45555555555566665553