Psyllid ID: psy1480

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
MKLDNPCLSAMRNFRRLIKYSKDENRVKFDPILPLELKNRVSGKGGDSKKAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRRSNKYIKKQEFHKKEISIGDKDLKAWEIDALLKKYPRL
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHccccccccccccccccccEHHccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mkldnpclsAMRNFRRLIKyskdenrvkfdpilplelknrvsgkggdskkagCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRRSNKYIKKQEFHKKEISIGDKDLKAWEIDALLKKYPRL
Flexible Loop (DISEMBL)
mkldnpclsaMRNFRRlikyskdenrvkfdpilplelknrvsgkggdsKKAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRRSNkyikkqefhkkeisigdkdlkaWEIDAllkkyprl
Low Complexity Region (SEG)
MKLDNPCLSAMRNFRRLIKYSKDENRVKFDPILPLELKNRVSGKGGDSKKAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRRSNKYIKKQEFHKKEISIGDKDLKAWEIDALLKKYPRL
Disordered region (IsUnstruct)
**********MRNFRRLIKYSKDENRVKFDPILPLEL*************AGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRRSNKYIKKQEFHKKEISIGDKDLKAWEIDALLK*****
Disordered Region (DISOPRED)
*******LSA******************FDPILPL******************IQEMSMAFSCLKANDFVQTNCAKEIKDFIACADL***************************EIDALLKKYPR*
Disordered Region (DISEMBL)
MKLDNPCLSAMRNFRRLIKYSKDENRVKFDPILPLELKNRV********KAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRRSNKYIKKQEFHKKEISIGDKDLKAWEIDALLKKYPRL
Disordered Region (DISPRO)
*KLDNPCLSAMRNFRRLIKYSKDENRVKFDPILPLELKNRVSGKGGDSKKAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRRSNKYIKKQE**K*E****DKDLKAWEIDALLKKYPRL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKLDNPCLSAMRNFRRLIKYSKDENRVKFDPILPLELKNRVSGKGGDSKKAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRRSNKYIKKQEFHKKEISIGDKDLKAWEIDALLKKYPRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	126	2.2.26 [Sep-21-2011]
Q9CQA6	118	Coiled-coil-helix-coiled-	yes	N/A	0.706	0.754	0.343	1e-07
Q96BP2	118	Coiled-coil-helix-coiled-	yes	N/A	0.547	0.584	0.385	1e-05

>sp|Q9CQA6|CHCH1_MOUSE Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 OS=Mus musculus GN=Chchd1 PE=3 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 10/99 (10%)

Query: 31  PIL----PLELKNRVSGKGGDSKKAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACAD 86
           PIL    PL L NRV  +  +  +A CI EMSM  +C K N+F    C KEI+DF  C  
Sbjct: 19  PILKPNKPLILANRVGNRRREKGEATCITEMSMMMACWKQNEFRDEACRKEIQDFFDC-- 76

Query: 87  LRRSNKYIKKQEFHKKEISIGDKD-LKAWEIDALLKKYP 124
              S++  + ++    + S+G  + L   ++  LL+++P
Sbjct: 77  ---SSRAQEARKMRSIQESLGQSESLSPHKMTKLLQRFP 112

Mus musculus (taxid: 10090)

>sp|Q96BP2|CHCH1_HUMAN Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 OS=Homo sapiens GN=CHCHD1 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 16 RLIKYSKDENRVKFDPILPLELKNRVSGKGGDSKKAGCIQEMSMAFSCLKANDFVQTNCA 75
          RL ++      V   P  PL L NRV  +  +  +A CI EMS+  +C K N+F    C 
Sbjct: 9  RLARFGNPRKPV-LKPNKPLILANRVGERRREKGEATCITEMSVMMACWKQNEFRDDACR 67

Query: 76 KEIKDFIACA 85
          KEI+ F+ CA
Sbjct: 68 KEIQGFLDCA 77

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
328700000	121	PREDICTED: hypothetical protein LOC10015	0.928	0.966	0.427	2e-19
239790183	121	ACYPI000240 [Acyrthosiphon pisum]	0.928	0.966	0.418	3e-19
158297103	120	AGAP008073-PA [Anopheles gambiae str. PE	0.896	0.941	0.413	5e-15
312386002	121	hypothetical protein AND_23277 [Anophele	0.841	0.876	0.411	6e-15
157125698	121	hypothetical protein AaeL_AAEL001974 [Ae	0.896	0.933	0.413	2e-14
91086139	118	PREDICTED: similar to AGAP008073-PA [Tri	0.793	0.847	0.42	9e-13
332374838	120	unknown [Dendroctonus ponderosae]	0.904	0.95	0.369	1e-12
195120183	120	GI19516 [Drosophila mojavensis] gi|19390	0.809	0.85	0.359	3e-11
195027772	120	GH21543 [Drosophila grimshawi] gi|193902	0.809	0.85	0.349	7e-11
194886688	120	GG19897 [Drosophila erecta] gi|190659850	0.809	0.85	0.359	7e-11

>gi|328700000|ref|XP_003241120.1| PREDICTED: hypothetical protein LOC100158813 [Acyrthosiphon pisum]

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 78/117 (66%)

Query: 8   LSAMRNFRRLIKYSKDENRVKFDPILPLELKNRVSGKGGDSKKAGCIQEMSMAFSCLKAN 67
           L+ + ++R + +Y+K+   VKF+ +LPL+LK +VSGKG  SK+  C+ E+S+ F+C K N
Sbjct: 3   LNNVLHYRDMRRYTKNPLEVKFEELLPLKLKEKVSGKGDRSKERACVHEISIMFACFKKN 62

Query: 68  DFVQTNCAKEIKDFIACADLRRSNKYIKKQEFHKKEISIGDKDLKAWEIDALLKKYP 124
           +F Q  C+ EI  F ACA    ++K+ +KQ+  + +IS G  +L   EI+ LLKKYP
Sbjct: 63  EFDQARCSDEITKFQACATKNYADKFKRKQDMLEGKISTGKDNLTPREINYLLKKYP 119

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239790183|dbj|BAH71668.1| ACYPI000240 [Acyrthosiphon pisum]

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/117 (41%), Positives = 78/117 (66%)

Query: 8   LSAMRNFRRLIKYSKDENRVKFDPILPLELKNRVSGKGGDSKKAGCIQEMSMAFSCLKAN 67
           L+ + ++R + +Y+K+   VKF+ +LPL+LK +VSGKG  SK+  C+ E+S+ F+C K N
Sbjct: 3   LNNVLHYRDMRRYTKNPLEVKFEELLPLKLKEKVSGKGDRSKERACVHEISIMFACFKKN 62

Query: 68  DFVQTNCAKEIKDFIACADLRRSNKYIKKQEFHKKEISIGDKDLKAWEIDALLKKYP 124
           +F Q  C+ EI  F ACA    ++K+ +KQ+  + ++S G  +L   EI+ LLKKYP
Sbjct: 63  EFDQARCSDEITKFQACATKNYADKFKRKQDMLEGKMSTGKDNLTPREINYLLKKYP 119

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158297103|ref|XP_001689027.1| AGAP008073-PA [Anopheles gambiae str. PEST] gi|157015034|gb|EDO63590.1| AGAP008073-PA [Anopheles gambiae str. PEST]

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 68/116 (58%), Gaps = 3/116 (2%)

Query: 11  MRNFRRLIKYSKDENR--VKFDPILPLELKNRVSGKGGDSKKAGCIQEMSMAFSCLKAND 68
           MR    L++  K +N   V F  +LPL+LKN VSGK   +    C+QEM++ FSCLK ND
Sbjct: 1   MRMASVLLRTRKPQNEADVPFQEVLPLKLKNHVSGKTDKTSDVACLQEMAVMFSCLKTND 60

Query: 69  FVQTNCAKEIKDFIACADLRRSNKYIKKQEFHKKEISIGDKDLKAWEIDALLKKYP 124
           F ++ CAKE+ +F  C  +    K  KK E   K + +  KDL   +++ +LKKYP
Sbjct: 61  FNESLCAKEVGNFQRCYKVYLDKKTAKK-ETSSKGVLVAGKDLNYKQLNKVLKKYP 115

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312386002|gb|EFR30379.1| hypothetical protein AND_23277 [Anopheles darlingi]

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 1/107 (0%)

Query: 18  IKYSKDENRVKFDPILPLELKNRVSGKGGDSKKAGCIQEMSMAFSCLKANDFVQTNCAKE 77
           ++  ++E+ V F  +LPL LKN VSGK   +    C+QEM++ FSCLK NDF ++ CAKE
Sbjct: 10  VRKPQNESDVPFQEVLPLRLKNHVSGKTDKTSDVACLQEMTVLFSCLKTNDFNESLCAKE 69

Query: 78  IKDFIACADLRRSNKYIKKQEFHKKEISIGDKDLKAWEIDALLKKYP 124
           + +F  C       K +KK E   K + +  KDL   +++ +LKKYP
Sbjct: 70  VGNFQQCYKGYLGKKSVKK-ETSGKGMLVAGKDLNYKQLNKVLKKYP 115

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157125698|ref|XP_001660737.1| hypothetical protein AaeL_AAEL001974 [Aedes aegypti] gi|108882590|gb|EAT46815.1| AAEL001974-PA [Aedes aegypti]

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 3/116 (2%)

Query: 11  MRNFRRLIKY--SKDENRVKFDPILPLELKNRVSGKGGDSKKAGCIQEMSMAFSCLKAND 68
           MR    L+K    + E+RV F  ILPL LKN+VSGK        C+QEM++ FSCLKAND
Sbjct: 1   MRTTSTLLKVRLPQLESRVPFQEILPLRLKNQVSGKTDKGSDVACLQEMAVMFSCLKAND 60

Query: 69  FVQTNCAKEIKDFIACADLRRSNKYIKKQEFHKKEISIGDKDLKAWEIDALLKKYP 124
           F +  C KE+  F  C  +    K  KK+   K  + +G KDL   +++ +LK++P
Sbjct: 61  FNEDLCPKEVSTFKRCYKVYLDKKATKKETSSKGIVVLG-KDLNYKQLNKVLKQFP 115

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91086139|ref|XP_968980.1| PREDICTED: similar to AGAP008073-PA [Tribolium castaneum]

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 57/100 (57%)

Query: 27  VKFDPILPLELKNRVSGKGGDSKKAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACAD 86
           V F  ILPL+LK RVSGKG  S    CI EMS+ F+C K NDF Q  C+KE+  F  C  
Sbjct: 18  VPFQEILPLKLKARVSGKGDKSSDVCCIYEMSVLFACFKNNDFNQAPCSKEMAAFQKCYL 77

Query: 87  LRRSNKYIKKQEFHKKEISIGDKDLKAWEIDALLKKYPRL 126
                  +KK+   K  ++ G+K L   +++ LL K+P +
Sbjct: 78  NHLEKTKVKKEREAKGILTPGEKKLSHRQVNTLLSKFPNI 117

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374838|gb|AEE62560.1| unknown [Dendroctonus ponderosae]

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 5/119 (4%)

Query: 11  MRNFRRLIKY-----SKDENRVKFDPILPLELKNRVSGKGGDSKKAGCIQEMSMAFSCLK 65
           MR F  L+       ++ +  V F  ILPL+LK  VSGKG       C+ EMS+ F+CL 
Sbjct: 1   MRLFTSLMGVKQKARARPQEPVPFKEILPLKLKPGVSGKGNKMSNLSCLYEMSILFACLS 60

Query: 66  ANDFVQTNCAKEIKDFIACADLRRSNKYIKKQEFHKKEISIGDKDLKAWEIDALLKKYP 124
            ++F Q  C KEI  F  C     S+K  K +   K  ++ G+++L A +++ LLK+YP
Sbjct: 61  NSEFQQQPCGKEITSFQKCYSTYTSDKKQKSERDMKGILTPGERNLSAKQLNMLLKRYP 119

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195120183|ref|XP_002004608.1| GI19516 [Drosophila mojavensis] gi|193909676|gb|EDW08543.1| GI19516 [Drosophila mojavensis]

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 1/103 (0%)

Query: 22  KDENRVKFDPILPLELKNRVSGKGGDSKKAGCIQEMSMAFSCLKANDFVQTNCAKEIKDF 81
           ++E  V F  ILPL LKN VSGK        C+QEM + F+CLK N+FV+  C KEI  F
Sbjct: 16  QNEKDVPFQEILPLRLKNTVSGKADSGSDVACLQEMGVLFACLKDNEFVEKYCHKEISQF 75

Query: 82  IACADLRRSNKYIKKQEFHKKEISIGDKDLKAWEIDALLKKYP 124
             C       K+  KQ  ++  +  G+ +L   +++  ++++P
Sbjct: 76  QNCYKFYMDRKFEAKQTVNQGIVQPGN-NLNYKQLNKYMRRFP 117

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195027772|ref|XP_001986756.1| GH21543 [Drosophila grimshawi] gi|193902756|gb|EDW01623.1| GH21543 [Drosophila grimshawi]

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 1/103 (0%)

Query: 22  KDENRVKFDPILPLELKNRVSGKGGDSKKAGCIQEMSMAFSCLKANDFVQTNCAKEIKDF 81
           ++E  V F  ILPL LKN VSGK        C+QEM + F+CLK N+FV+  C KEI  F
Sbjct: 16  QNEKEVPFQEILPLRLKNTVSGKADSGSDVACLQEMGVLFACLKDNEFVEKYCNKEINQF 75

Query: 82  IACADLRRSNKYIKKQEFHKKEISIGDKDLKAWEIDALLKKYP 124
             C       K+  K+  ++  +  G+ +L   +++  ++++P
Sbjct: 76  QKCYKFYMDRKFEAKKTVNQGVVQPGN-NLNYKQLNKYMRRFP 117

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194886688|ref|XP_001976663.1| GG19897 [Drosophila erecta] gi|190659850|gb|EDV57063.1| GG19897 [Drosophila erecta]

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 1/103 (0%)

Query: 22  KDENRVKFDPILPLELKNRVSGKGGDSKKAGCIQEMSMAFSCLKANDFVQTNCAKEIKDF 81
           ++E  V F  ILPL LKN VSGK        C+QEM + F+CLK N+FV+  C KEI  F
Sbjct: 16  QNEKDVPFQEILPLRLKNTVSGKADSGSDVACLQEMGVLFACLKDNEFVEKYCHKEISQF 75

Query: 82  IACADLRRSNKYIKKQEFHKKEISIGDKDLKAWEIDALLKKYP 124
             C    +  K+  K+  ++  +  G  +L   +++  +++YP
Sbjct: 76  QNCYKCYQDRKFEAKKTVNQGIVQPGS-NLNYKQLNKYMRRYP 117

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
FB|FBgn0040666	120	CG12848 [Drosophila melanogast	0.809	0.85	0.359	1.3e-13
MGI|MGI:1913371	118	Chchd1 "coiled-coil-helix-coil	0.817	0.872	0.318	3.6e-09
UNIPROTKB|E2RE66	118	CHCHD1 "Uncharacterized protei	0.706	0.754	0.315	1.6e-08
RGD|1307134	118	Chchd1 "coiled-coil-helix-coil	0.817	0.872	0.309	2.6e-08
UNIPROTKB|Q96BP2	118	CHCHD1 "Coiled-coil-helix-coil	0.817	0.872	0.309	5.3e-08
UNIPROTKB|Q2HJE8	118	CHCHD1 "Uncharacterized protei	0.714	0.762	0.329	8.7e-08
UNIPROTKB|F1SU49	118	CHCHD1 "Uncharacterized protei	0.714	0.762	0.329	1.4e-07
UNIPROTKB|A6NJX6	97	CHCHD1 "Coiled-coil-helix-coil	0.547	0.711	0.385	2.3e-07
ZFIN|ZDB-GENE-060810-176	113	chchd1 "coiled-coil-helix-coil	0.738	0.823	0.288	4.3e-06

FB|FBgn0040666 CG12848 [Drosophila melanogaster (taxid:7227)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 37/103 (35%), Positives = 55/103 (53%)

Query:    22 KDENRVKFDPILPLELKNRVSGKGGDSKKAGCIQEMSMAFSCLKANDFVQTNCAKEIKDF 81
             + E  V F  ILPL LKN VSGK        C+QEM + F+CLK N+FV+  C KEI  F
Sbjct:    16 QSEKDVPFQEILPLRLKNTVSGKADSGSDVACLQEMGVLFACLKDNEFVEKYCHKEISQF 75

Query:    82 IACADLRRSNKYIKKQEFHKKEISIGDKDLKAWEIDALLKKYP 124
               C       K+  K+  ++  +  G  +L   +++  +++YP
Sbjct:    76 QNCYKCYMDRKFEAKKTVNQGIVQPGS-NLNYKQLNKYMRRYP 117

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1913371 Chchd1 "coiled-coil-helix-coiled-coil-helix domain containing 1" [Mus musculus (taxid:10090)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 35/110 (31%), Positives = 57/110 (51%)

Query:    16 RLIKYSKDENRVKFDPILPLELKNRVSGKGGDSKKAGCIQEMSMAFSCLKANDFVQTNCA 75
             RL +++     +   P  PL L NRV  +  +  +A CI EMSM  +C K N+F    C 
Sbjct:     9 RLARFANPGKPI-LKPNKPLILANRVGNRRREKGEATCITEMSMMMACWKQNEFRDEACR 67

Query:    76 KEIKDFIACADLRRSNKYIKKQEFHKKEISIGDKD-LKAWEIDALLKKYP 124
             KEI+DF  C+   R+ +  K +   +   S+G  + L   ++  LL+++P
Sbjct:    68 KEIQDFFDCSS--RAQEARKMRSIQE---SLGQSESLSPHKMTKLLQRFP 112

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E2RE66 CHCHD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 30/95 (31%), Positives = 53/95 (55%)

Query:    31 PILPLELKNRVSGKGGDSKKAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRRS 90
             P  PL L NRV  +  +  +A CI EMS+  +C K N+F    C KEI+DF  CA    +
Sbjct:    23 PNKPLILANRVGERRRERGEATCITEMSVMMACWKQNEFRDEACRKEIQDFFDCASRAEA 82

Query:    91 NKYIKKQEFHKKEISIGDK-DLKAWEIDALLKKYP 124
              + ++  ++     ++G+  +L   +++ LL+++P
Sbjct:    83 ARKMRSIQY-----TLGESGNLPPKKLNTLLQRFP 112

GO:0005739 "mitochondrion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

RGD|1307134 Chchd1 "coiled-coil-helix-coiled-coil-helix domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 34/110 (30%), Positives = 55/110 (50%)

Query:    16 RLIKYSKDENRVKFDPILPLELKNRVSGKGGDSKKAGCIQEMSMAFSCLKANDFVQTNCA 75
             RL +++     +   P  PL L NRV  +  +  +A CI EMSM  +C K N+F    C 
Sbjct:     9 RLARFANPGKPI-LKPNKPLILANRVGNRRREKGEATCITEMSMMMACWKQNEFRDEACR 67

Query:    76 KEIKDFIACADLRRSNKYIKKQEFHKKEISIGDK-DLKAWEIDALLKKYP 124
             KEI+DF  C     S+K  +  +    + ++G    L   ++  LL+++P
Sbjct:    68 KEIQDFFDC-----SSKAQEAGKMRSIQETLGQSGSLPPHKMTKLLQRFP 112

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

UNIPROTKB|Q96BP2 CHCHD1 "Coiled-coil-helix-coiled-coil-helix domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 34/110 (30%), Positives = 57/110 (51%)

Query:    16 RLIKYSKDENRVKFDPILPLELKNRVSGKGGDSKKAGCIQEMSMAFSCLKANDFVQTNCA 75
             RL ++      V   P  PL L NRV  +  +  +A CI EMS+  +C K N+F    C 
Sbjct:     9 RLARFGNPRKPV-LKPNKPLILANRVGERRREKGEATCITEMSVMMACWKQNEFRDDACR 67

Query:    76 KEIKDFIACADLRRSNKYIKKQEFHKKEISIGDK-DLKAWEIDALLKKYP 124
             KEI+ F+ CA   R+ +  K +   +   ++G+   L   +++ LL+++P
Sbjct:    68 KEIQGFLDCA--ARAQEARKMRSIQE---TLGESGSLLPNKLNKLLQRFP 112

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q2HJE8 CHCHD1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 31/94 (32%), Positives = 48/94 (51%)

Query:    31 PILPLELKNRVSGKGGDSKKAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRRS 90
             P  PL L N V  +  +  +A CI EMS+  +C K N+F    C KEI+DF  CA   R+
Sbjct:    23 PNKPLILANHVGERRREKGEATCITEMSIMMACWKQNEFRDEACKKEIRDFFDCAS--RA 80

Query:    91 NKYIKKQEFHKKEISIGDKDLKAWEIDALLKKYP 124
                 K +   +    +G   L   +++ LL+++P
Sbjct:    81 EAARKMRSIQEDLGELGS--LPPRKLNKLLQRFP 112

GO:0005739 "mitochondrion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|F1SU49 CHCHD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 31/94 (32%), Positives = 47/94 (50%)

Query:    31 PILPLELKNRVSGKGGDSKKAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRRS 90
             P  PL L N V  +  +  +A CI EMS+  +C K N+F    C KEI+DF  CA   R+
Sbjct:    23 PNKPLILANHVGERRREKGEATCITEMSVMMACWKQNEFRDEACRKEIQDFFDCAS--RA 80

Query:    91 NKYIKKQEFHKKEISIGDKDLKAWEIDALLKKYP 124
                 K +   +    +G    K  +++ LL ++P
Sbjct:    81 EAARKMRSIQENLGELGSLPPK--KLNKLLHRFP 112

GO:0005739 "mitochondrion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|A6NJX6 CHCHD1 "Coiled-coil-helix-coiled-coil-helix domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 27/70 (38%), Positives = 37/70 (52%)

Query:    16 RLIKYSKDENRVKFDPILPLELKNRVSGKGGDSKKAGCIQEMSMAFSCLKANDFVQTNCA 75
             RL ++      V   P  PL L NRV  +  +  +A CI EMS+  +C K N+F    C 
Sbjct:     9 RLARFGNPRKPV-LKPNKPLILANRVGERRREKGEATCITEMSVMMACWKQNEFRDDACR 67

Query:    76 KEIKDFIACA 85
             KEI+ F+ CA
Sbjct:    68 KEIQGFLDCA 77

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

ZFIN|ZDB-GENE-060810-176 chchd1 "coiled-coil-helix-coiled-coil-helix domain containing 1" [Danio rerio (taxid:7955)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 30/104 (28%), Positives = 46/104 (44%)

Query:    21 SKDENRVKFDPILPLELKNRVSGKGGDSKKAGCIQEMSMAFSCLKANDFVQTNCAKEIKD 80
             S+   R       PL LKN V  +     +A C+ EMS+  +C K NDF    C +E+  
Sbjct:    15 SRQNGRPALKATKPLVLKNEVPMRKMTKGEATCVTEMSLLMACWKQNDFNNAFCPQEVTA 74

Query:    81 FIACADLRRSNKYIKKQEFHKKEISIGDKDLKAWEIDALLKKYP 124
             F  C         ++K +   +    G   L   E++ LLK++P
Sbjct:    75 FYTC---------VEKAKMRNQGRKAGR--LLPEEVNTLLKRFP 107


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      126       126   0.00091  102 3  11 22  0.37    31
                                                     29  0.40    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  133 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.18u 0.11s 13.29t   Elapsed:  00:00:01
  Total cpu time:  13.18u 0.11s 13.29t   Elapsed:  00:00:01
  Start:  Thu Aug 15 12:16:06 2013   End:  Thu Aug 15 12:16:07 2013

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CQA6	CHCH1_MOUSE	No assigned EC number	0.3434	0.7063	0.7542	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	126
pfam06747	35	pfam06747, CHCH, CHCH domain	4e-04

>gnl|CDD|148383 pfam06747, CHCH, CHCH domain

 Score = 35.3 bits (82), Expect = 4e-04
 Identities = 11/32 (34%), Positives = 13/32 (40%)

Query: 53 CIQEMSMAFSCLKANDFVQTNCAKEIKDFIAC 84
          C +E      CLK N    + C KE   F  C
Sbjct: 1  CGEEFKAFLKCLKENSDELSKCRKEFDAFRQC 32

we have identified a conserved motif in the LOC118487 protein that we have called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterized proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11-kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit. The CHCH domain was previously called DUF657. Length = 35

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
KOG4695|consensus	122		100.0
PF06747	35	CHCH: CHCH domain; InterPro: IPR010625 A conserved	98.73
PF08991	67	DUF1903: Domain of unknown function (DUF1903); Int	96.78
KOG4149|consensus	129		95.33
KOG4618|consensus	74		94.46
KOG3477|consensus	97		91.21
PF08583	69	Cmc1: Cytochrome c oxidase biogenesis protein Cmc1	90.35
KOG4138|consensus	96		85.97

>KOG4695|consensus

Probab=100.00  E-value=2.8e-36  Score=221.87  Aligned_cols=110  Identities=33%  Similarity=0.571  Sum_probs=99.9

Q ss_pred             HHHhhcccCCCCCCCCCcccccccccccc-CCCCCCCCCChHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHH
Q psy1480          14 FRRLIKYSKDENRVKFDPILPLELKNRVS-GKGGDSKKAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRRSNK   92 (126)
Q Consensus        14 ~~~~~r~p~~~~~vpfke~lPL~Lk~~V~-gk~~k~~~~~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~~~~~~~   92 (126)
                      |.+.+|.|++|+++||+|||||+|||||. |++++.++++|++||++||+|||+|+|+|++|.+||+.|++|+..+.+++
T Consensus         8 l~~r~~a~g~pk~~vf~eilPL~lkNrv~~g~~~~gs~~tC~qEm~vlfaClK~nEF~d~~C~Kei~~f~dC~~~ya~ea   87 (122)
T KOG4695|consen    8 LRGRLAAFGNPKKPVFKEILPLILKNRVGEGRREKGSEATCIQEMSVLFACLKQNEFRDDACRKEIQGFLDCAARYAQEA   87 (122)
T ss_pred             HHHHHhccCCCCCCccccchhHHHhhhhccccCCcccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Confidence            57889999999999999999999999876 89999999999999999999999999999999999999999999977777


Q ss_pred             HHHHHhhcccccccCCCCCCHHHHHHHHhhCCCC
Q psy1480          93 YIKKQEFHKKEISIGDKDLKAWEIDALLKKYPRL  126 (126)
Q Consensus        93 ~~~k~~~~~g~l~~G~~~Lt~kQiN~LLkryP~~  126 (126)
                      .+++...  |++++|+ +|++.+.|+++++|||.
T Consensus        88 ~~~r~~~--gtlgesg-sl~~~~~nk~~~~fp~~  118 (122)
T KOG4695|consen   88 RKMRSIQ--ETLGESG-SLLPNKLNKLLQRFPNK  118 (122)
T ss_pred             HHHHHhH--hhhCCcc-ccCHHHHhhhhhcCCCC
Confidence            6666444  8886664 89999999999999983

>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif

Probab=98.73  E-value=1.2e-08  Score=59.52  Aligned_cols=34  Identities=38%  Similarity=0.799  Sum_probs=31.8

Q ss_pred             hHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHH
Q psy1480          53 CIQEMSMAFSCLKANDFVQTNCAKEIKDFIACAD   86 (126)
Q Consensus        53 C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~   86 (126)
                      |.+||..+|+||+.|+++.+.|.+++++|.+|+.
T Consensus         1 C~~e~~~~~~Cl~~n~~~~~~C~~~~~~~~~C~~   34 (35)
T PF06747_consen    1 CAEEMKAYLACLKENNFDWSKCRKEFKAYKECRM   34 (35)
T ss_dssp             THHHHHHHHHHHHCH-SSTCCCHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHCCCcHHhhHHHHHHHHHHhh
Confidence            8999999999999999999999999999999974

Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.

>PF08991 DUF1903: Domain of unknown function (DUF1903); InterPro: IPR009069 The mature-T-cell-proliferation (MTCP1) putative oncogene was identified for its involvement in t(X:14)(q28;q11)-associated T-cell leukaemia []

Probab=96.78  E-value=0.0019  Score=43.76  Aligned_cols=42  Identities=19%  Similarity=0.480  Sum_probs=34.9

Q ss_pred             CChHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHH
Q psy1480          51 AGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRRSNK   92 (126)
Q Consensus        51 ~~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~~~~~~~   92 (126)
                      .||..|=-.+..|+..|+|+.+.|.+.|++|..|-...+..+
T Consensus         2 ~PC~~~Ac~iq~CL~~N~Yd~~kC~~~i~~l~~Cck~~y~~~   43 (67)
T PF08991_consen    2 DPCQKEACAIQKCLQRNNYDESKCQDYIDALYECCKKFYEQR   43 (67)
T ss_dssp             -TTHHHHHHHHHHHHHTTT-CCCTHHHHHHHHHHHTTS----
T ss_pred             cchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcc
Confidence            489999999999999999999999999999999998886433

MTCP1 is alternatively spliced to produce two completely distinct proteins: the small mitochondrial protein, p8MTCP1, and the protein p13MTCP1, which shows strong homology to another oncogene product, p14TCL1. While p13MTCP1 expression appears to be restricted to mature T-cell proliferation with t(X,14) translocations, the mitochondrial p8MTCP1 is expressed at low levels in most human tissues, and is over-expressed in the proliferating T-cells. The biological function of p8MTCP1 is still unknown, but it appears to play a role in oncogenesis. The structure of p8MTCP1 reveals a disulphide-rich, irregular array of three helices [].; PDB: 2HP8_A 1EI0_A 1HP8_A.

>KOG4149|consensus

Probab=95.33  E-value=0.034  Score=42.16  Aligned_cols=46  Identities=24%  Similarity=0.388  Sum_probs=39.6

Q ss_pred             CCCChHHHHHHHHHHHhhCC--CCchhhHHHHHHHHHHHHHHHHHHHH
Q psy1480          49 KKAGCIQEMSMAFSCLKAND--FVQTNCAKEIKDFIACADLRRSNKYI   94 (126)
Q Consensus        49 ~~~~C~~EMs~llaCwk~N~--f~d~~Cakei~~f~~C~~~~~~~~~~   94 (126)
                      ...||..|.-..|+|++.++  -....|.++..+++.||+++.....+
T Consensus        66 ~a~pCG~eFreA~sCf~~s~~e~kg~dC~~qf~a~~~C~qk~p~~~~e  113 (129)
T KOG4149|consen   66 VAGPCGEEFREAFSCFKYSDTEPKGGDCVKQFVAMQECMQKYPREEEE  113 (129)
T ss_pred             ccCccHHHHHHHHhhccccCCCcCccchHHHHHHHHHHHHhCchHHHH
Confidence            35799999999999999997  56789999999999999999844433

>KOG4618|consensus

Probab=94.46  E-value=0.17  Score=35.17  Aligned_cols=48  Identities=19%  Similarity=0.550  Sum_probs=42.6

Q ss_pred             CCChHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1480          50 KAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRRSNKYIKKQ   97 (126)
Q Consensus        50 ~~~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~~~~~~~~~~k~   97 (126)
                      -.||..|=++-|-|+..|+||-++|...-..+.+|-..-.+.+.+++.
T Consensus        21 ~nPCl~es~aSfkCLeennyDRsKCq~yFd~YkeCKkfwn~ar~errk   68 (74)
T KOG4618|consen   21 YNPCLLESSASFKCLEENNYDRSKCQDYFDVYKECKKFWNEARLERRK   68 (74)
T ss_pred             CChHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            389999999999999999999999999999999998887766665543

>KOG3477|consensus

Probab=91.21  E-value=0.3  Score=35.33  Aligned_cols=36  Identities=25%  Similarity=0.530  Sum_probs=34.0

Q ss_pred             CCChHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHH
Q psy1480          50 KAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACA   85 (126)
Q Consensus        50 ~~~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~   85 (126)
                      ...|..||.-.|.|++....+...|.-..+.+..|-
T Consensus        27 ~geC~~em~eYl~Cl~~k~e~~~eCR~laK~YlqCR   62 (97)
T KOG3477|consen   27 LGECTAEMKEYLGCLKSKAENSEECRLLAKKYLQCR   62 (97)
T ss_pred             ccccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            578999999999999999999999999999999993

>PF08583 Cmc1: Cytochrome c oxidase biogenesis protein Cmc1 like; InterPro: IPR013892 Cmc1 is a metallo-chaperone like protein which is known to localise to the inner mitochondrial membrane in Saccharomyces cerevisiae

Probab=90.35  E-value=0.88  Score=29.22  Aligned_cols=44  Identities=23%  Similarity=0.465  Sum_probs=38.0

Q ss_pred             CChHHHHHHHHHHHhhCCC-CchhhHHHHHHHHHHHHHHHHHHHH
Q psy1480          51 AGCIQEMSMAFSCLKANDF-VQTNCAKEIKDFIACADLRRSNKYI   94 (126)
Q Consensus        51 ~~C~~EMs~llaCwk~N~f-~d~~Cakei~~f~~C~~~~~~~~~~   94 (126)
                      ..|..++..|..|-+...+ ....|.++..+++.|+..+..+...
T Consensus        11 ~~C~~~i~~~~~C~~~~~~~~~~~C~~~~~~m~~Cl~~~~~~~~~   55 (69)
T PF08583_consen   11 KKCADEIEAFAECHKDRTFKFVGKCREEKKAMNECLKEERNDERF   55 (69)
T ss_pred             HHhHHHHHHHHHHHhcchHHHHHhhhHHHHHHHHHHHHHHhhHHH
Confidence            6799999999999999664 5689999999999999988765544

It is essential for full expression of cytochrome c oxidase and respiration []. Cmc1 contains two Cx9C motifs and is able to bind copper(I). Cmc1 is thought to play a role in mitochondrial copper trafficking and transfer to cytochrome c oxidase.

>KOG4138|consensus

Probab=85.97  E-value=1.8  Score=31.34  Aligned_cols=52  Identities=17%  Similarity=0.384  Sum_probs=42.2

Q ss_pred             CCChHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy1480          50 KAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRRSNKYIKKQEFHKK  102 (126)
Q Consensus        50 ~~~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~~~~~~~~~~k~~~~~g  102 (126)
                      ...|..|=.+|=-|.++. .|=-+|..++++|..|++++...+.+-.....++
T Consensus        40 k~GC~~ehlalq~C~a~t-~DWRqC~~qm~~FrkCwek~~g~r~~~s~~~~~~   91 (96)
T KOG4138|consen   40 KSGCAAEHLALQECMAQT-QDWRQCQPQMQAFRKCWEKQQGRRQEESQRRQEQ   91 (96)
T ss_pred             ccchHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHcCCchHHHHHhhhc
Confidence            368999999999999987 4567899999999999999887776655554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	126
1ei0_A	38	P8MTCP1; helix-turn-helix, disulfide bridges, cell	97.09
1hp8_A	68	HU-P8; leukemia, cysteine motif; NMR {Homo sapiens	96.78
2lqt_A	85	Coiled-coil-helix-coiled-coil-helix domain-contai	95.92
2k3j_A	146	Mitochondrial intermembrane space import and assem	95.3
2lql_A	113	Coiled-coil-helix-coiled-coil-helix domain-contai	94.24
2zxt_A	465	Maltose-binding periplasmic protein, linker, MITO	91.99

>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1

Probab=97.09  E-value=0.0009  Score=39.82  Aligned_cols=36  Identities=25%  Similarity=0.657  Sum_probs=33.8

Q ss_pred             CChHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHH
Q psy1480          51 AGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACAD   86 (126)
Q Consensus        51 ~~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~   86 (126)
                      .||-.+.-++..|+..|+++.+.|...+.+|+.|=+
T Consensus         1 dpC~~~a~a~q~CL~~n~~d~skCq~~id~l~~Cc~   36 (38)
T 1ei0_A            1 DPCQKQAAEIQKCLQANSYLESKCQAVIQELKKCAA   36 (38)
T ss_dssp             CCSHHHHHHHHHHHHHTTTCGGGTHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHh
Confidence            379999999999999999999999999999999964

>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A

Probab=96.78  E-value=0.0022  Score=42.81  Aligned_cols=40  Identities=23%  Similarity=0.554  Sum_probs=37.3

Q ss_pred             CCChHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHH
Q psy1480          50 KAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRR   89 (126)
Q Consensus        50 ~~~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~~~~   89 (126)
                      ..||-.+.-++..|+..|+|+.+.|...+++|+.|-....
T Consensus         4 ~dPC~~~AcaiQ~CL~~N~yd~skCq~~id~L~eCc~~~~   43 (68)
T 1hp8_A            4 KDPCQKQACEIQKCLQANSYMESKCQAVIQELRKCCAQYP   43 (68)
T ss_dssp             CCTTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTSC
T ss_pred             CCchHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHc
Confidence            4899999999999999999999999999999999987654

>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}

Probab=95.92  E-value=0.025  Score=39.23  Aligned_cols=62  Identities=16%  Similarity=0.273  Sum_probs=45.3

Q ss_pred             cCCCCCCCCCChHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccC
Q psy1480          42 SGKGGDSKKAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRRSNKYIKKQEFHKKEISIG  107 (126)
Q Consensus        42 ~gk~~k~~~~~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~~~~~~~~~~k~~~~~g~l~~G  107 (126)
                      .+|-+..-..||..|=.+=+.|+-.|++|-+.|.....++.+|-..-.   ..+++...+|+. |.
T Consensus         5 ~~r~r~~d~nPC~~e~~~S~kCL~~n~yDr~~C~~yF~~Yk~CKk~W~---~v~~eRRr~Gi~-P~   66 (85)
T 2lqt_A            5 TQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWN---SIVMQRRKNGVK-PF   66 (85)
T ss_dssp             ---------CCCHHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHHHHH---HHHHHHHTTCCS-CS
T ss_pred             cccccCCCCCccHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCC-CC
Confidence            334333335899999999999999999999999999999999976655   555666677774 44

>2k3j_A Mitochondrial intermembrane space import and assembly protein 40; alpha-hairpin fold, coiled coil-helix-coiled coil-helix domain; NMR {Homo sapiens} PDB: 2l0y_A

Probab=95.30  E-value=0.028  Score=42.39  Aligned_cols=41  Identities=17%  Similarity=0.492  Sum_probs=35.4

Q ss_pred             CCChHHHHHHHHHHHhhCC--CCchhhHHHHHHHHHHHHHHHH
Q psy1480          50 KAGCIQEMSMAFSCLKAND--FVQTNCAKEIKDFIACADLRRS   90 (126)
Q Consensus        50 ~~~C~~EMs~llaCwk~N~--f~d~~Cakei~~f~~C~~~~~~   90 (126)
                      ..||..|.-..|+||..++  -.-..|.++-.+|+.||..+.+
T Consensus        65 ~GPCG~eFreAfsCF~~S~~e~Kg~dC~e~F~~mq~Cm~~~P~  107 (146)
T 2k3j_A           65 SGPCGEQFKSAFSCFHYSTEEIKGSDCVDQFRAMQECMQKYPD  107 (146)
T ss_dssp             SSSTHHHHHHHHHHHHHHCCSSTTTTTHHHHHHHHHHHHHCSS
T ss_pred             CCCcHHHHHHHHHhhccCccccccchHHHHHHHHHHHHHHChH
Confidence            4699999999999996655  4578999999999999998873

>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}

Probab=94.24  E-value=0.024  Score=40.56  Aligned_cols=40  Identities=28%  Similarity=0.659  Sum_probs=35.9

Q ss_pred             CCChHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHH
Q psy1480          50 KAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRR   89 (126)
Q Consensus        50 ~~~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~~~~   89 (126)
                      ...|..||.+.-.|+..|+.+-..|.++...|..|++...
T Consensus        58 ~~~C~~ef~~y~~CL~~n~~~~~~Cr~~~~~f~~Cae~v~   97 (113)
T 2lql_A           58 RQACAQPFEAFEECLRQNEAAVGNCAEHMRRFLQCAEQVQ   97 (113)
T ss_dssp             HHHTHHHHHHHHHHHHHCTTCTTTCCSHHHHHHHHHTTC-
T ss_pred             HHHhHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Confidence            3579999999999999999999999999999999996543

>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli}

Probab=91.99  E-value=0.19  Score=41.30  Aligned_cols=41  Identities=20%  Similarity=0.424  Sum_probs=36.5

Q ss_pred             CCCChHHHHHHHHHHHhhCC--CCchhhHHHHHHHHHHHHHHH
Q psy1480          49 KKAGCIQEMSMAFSCLKAND--FVQTNCAKEIKDFIACADLRR   89 (126)
Q Consensus        49 ~~~~C~~EMs~llaCwk~N~--f~d~~Cakei~~f~~C~~~~~   89 (126)
                      ...+|..|.-..|+|+..++  ...+.|.++-.+|++||..+.
T Consensus       403 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~  445 (465)
T 2zxt_A          403 AHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYP  445 (465)
T ss_dssp             TSSTTHHHHHHHHHHHHHCCSSSTTGGGHHHHHHHHHHHTTCT
T ss_pred             CCCCchHHHHHHHHhhhcCccccccchHHHHHHHHHHHHHHCH
Confidence            35699999999999999777  566899999999999999887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	126
d2hp8a_	68	p8-MTCP1 {Human (Homo sapiens) [TaxId: 9606]}	96.13

>d2hp8a_ a.17.1.1 (A:) p8-MTCP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Cysteine alpha-hairpin motif
superfamily: Cysteine alpha-hairpin motif
family: p8-MTCP1
domain: p8-MTCP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0036  Score=40.31  Aligned_cols=40  Identities=23%  Similarity=0.554  Sum_probs=36.5

Q ss_pred             CCChHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHH
Q psy1480          50 KAGCIQEMSMAFSCLKANDFVQTNCAKEIKDFIACADLRR   89 (126)
Q Consensus        50 ~~~C~~EMs~llaCwk~N~f~d~~Cakei~~f~~C~~~~~   89 (126)
                      ..||-.+--.+=.|++.|+|+++.|.++|+++..|-.+.+
T Consensus         4 kdPCk~~AC~IQ~CLq~N~Y~EskC~~~i~~L~~CC~~f~   43 (68)
T d2hp8a_           4 KDPCQKQACEIQKCLQANSYMESKCQAVIQELRKCCAQYP   43 (68)
T ss_dssp             CCTTHHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHTTSC
T ss_pred             CCCchHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhc
Confidence            3689999999999999999999999999999999987754