Psyllid ID: psy14840

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MSTYLAEDKMDILEQLNVNLTLFIEHFSETSKNYSLLPYPPIYNCDELDGVMAVPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSRLLH
Secondary Structure (PSIPRED)
ccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccEEHHHHHHHHHHcccccHHEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHccccHHHc
Coil and Loop (DISEMBL)
MSTYLAEDKMDILEQLNVNLTLFIEHFSetsknysllpyppiyncdeldgvmavplfRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCvpfsrllh
Flexible Loop (DISEMBL)
mstylaedkMDILEQLNVNLTLFIEHFSETSKNYSLLPYPPIYNCDELDGVMAVPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSRLLH
Low Complexity Region (SEG)
MSTYLAEDKMDILEQLNVNLTLFIEHFSETSKNYSLLPYPPIYNCDELDGVMAVPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSRLLH
Disordered region (IsUnstruct)
********KMDILEQLNVNLTLFIEHFSETSKNYSLLPYPPIYNCDELDGVMAVPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSR***
Disordered Region (DISOPRED)
*****A*DKMDILEQLNVNLTLFIEHFSETSKNYSLLPYPPIYNCDELDGVMAVPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSRLLH
Disordered Region (DISEMBL)
MSTYLAEDKMDILEQLNVNLTLFIEHFSETSKNYSLLPYPPIYNCDELDGVMAVPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSRLLH
Disordered Region (DISPRO)
*STYLAEDKMDILEQLNVNLTLFIEHFSETSKNYSLLPYPPIYNCDELDGVMAVPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSRLLH
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSTYLAEDKMDILEQLNVNLTLFIEHFSETSKNYSLLPYPPIYNCDELDGVMAVPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSRLLH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	119	2.2.26 [Sep-21-2011]
P25931	464	Neuropeptide Y receptor O	yes	N/A	0.613	0.157	0.402	2e-10
P58307	416	Orexin receptor type 1 OS	yes	N/A	0.521	0.149	0.435	6e-10
P56718	416	Orexin receptor type 1 OS	yes	N/A	0.521	0.149	0.435	7e-10
Q91V45	396	KiSS-1 receptor OS=Mus mu	no	N/A	0.638	0.191	0.381	8e-10
P56719	460	Orexin receptor type 2 OS	no	N/A	0.478	0.123	0.456	8e-10
P58308	460	Orexin receptor type 2 OS	no	N/A	0.478	0.123	0.456	1e-09
Q0GBZ5	425	Orexin receptor type 1 OS	no	N/A	0.521	0.145	0.435	1e-09
O43614	444	Orexin receptor type 2 OS	yes	N/A	0.478	0.128	0.456	1e-09
Q9TUP7	444	Orexin receptor type 2 OS	no	N/A	0.478	0.128	0.456	2e-09
Q9EP86	432	Neuropeptide FF receptor	no	N/A	0.436	0.120	0.461	2e-09

>sp|P25931|NPYR_DROME Neuropeptide Y receptor OS=Drosophila melanogaster GN=NepYr PE=2 SV=2

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 4/77 (5%)

Query: 43  YNCDELD----GVMAVPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFII 98
           ++CD+ D     + +   F+  V   Y  IF+ +L+GNG VCY V  + +M+TVTN+FI 
Sbjct: 86  FSCDDYDLLSEDMWSSAYFKIIVYMLYIPIFIFALIGNGTVCYIVYSTPRMRTVTNYFIA 145

Query: 99  NLSTNDIILTLFCVPFS 115
           +L+  DI+++ FCVP S
Sbjct: 146 SLAIGDILMSFFCVPSS 162

Receptor for neuropeptide Y and peptide YY.
Drosophila melanogaster (taxid: 7227)

>sp|P58307|OX1R_MOUSE Orexin receptor type 1 OS=Mus musculus GN=Hcrtr1 PE=2 SV=3

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 45/62 (72%)

Query: 57  FRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSR 116
           + + +I+ Y  +F+++L+GN LVC AV  +  M+TVTN+FI+NLS  D+++T  C+P S 
Sbjct: 45  YEWVLIAAYVAVFLIALVGNTLVCLAVWRNHHMRTVTNYFIVNLSLADVLVTAICLPASL 104

Query: 117 LL 118
           L+
Sbjct: 105 LV 106

Moderately selective excitatory receptor for orexin-A and, with a lower affinity, for orexin-B neuropeptide. Seems to be exclusively coupled to the G(q) subclass of heteromeric G proteins, which activates the phospholipase C mediated signaling cascade.

Mus musculus (taxid: 10090)

>sp|P56718|OX1R_RAT Orexin receptor type 1 OS=Rattus norvegicus GN=Hcrtr1 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 45/62 (72%)

Query: 57  FRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSR 116
           + + +I+ Y  +F+++L+GN LVC AV  +  M+TVTN+FI+NLS  D+++T  C+P S 
Sbjct: 45  YEWVLIAAYVAVFLIALVGNTLVCLAVWRNHHMRTVTNYFIVNLSLADVLVTAICLPASL 104

Query: 117 LL 118
           L+
Sbjct: 105 LV 106

Moderately selective excitatory receptor for orexin-A and, with a lower affinity, for orexin-B neuropeptide. Seems to be exclusively coupled to the G(q) subclass of heteromeric G proteins, which activates the phospholipase C mediated signaling cascade.

Rattus norvegicus (taxid: 10116)

>sp|Q91V45|KISSR_MOUSE KiSS-1 receptor OS=Mus musculus GN=Kiss1r PE=1 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 45/76 (59%)

Query: 44  NCDELDGVMAVPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTN 103
           N  +  G    PL  + V  F++ + ++ L+GN LV Y +   + M+TVTNF+I NL+  
Sbjct: 28  NASDDPGSAPRPLDAWLVPLFFATLMLLGLVGNSLVIYVICRHKHMQTVTNFYIANLAAT 87

Query: 104 DIILTLFCVPFSRLLH 119
           D+   L CVPF+ LL+
Sbjct: 88  DVTFLLCCVPFTALLY 103

Receptor for metastin (kisspeptin-52 or kp-52), a C-terminally amidated peptide of KiSS1. KiSS1 is a metastasis suppressor protein. Activation of the receptor inhibits cell proliferation and cell migration, key characteristics of tumor metastasis. The receptor is essential for normal gonadotropin-released hormone physiology and for puberty. The hypothalamic KiSS1/KISS1R system is a pivotal factor in central regulation of the gonadotropic axis at puberty and in adulthood. Analysis of the transduction pathways activated by the receptor identifies coupling to phospholipase C and intracellular calcium release through pertussis toxin-insensitive G(q) proteins.

Mus musculus (taxid: 10090)

>sp|P56719|OX2R_RAT Orexin receptor type 2 OS=Rattus norvegicus GN=Hcrtr2 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 44/57 (77%)

Query: 57  FRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVP 113
           + + +I+ Y ++FV++L+GN LVC AV  +  M+TVTN+FI+NLS  D+++T+ C+P
Sbjct: 53  YEWVLIAGYIIVFVVALIGNVLVCVAVWKNHHMRTVTNYFIVNLSLADVLVTITCLP 109

Nonselective, high-affinity receptor for both orexin-A and orexin-B neuropeptides.

Rattus norvegicus (taxid: 10116)

>sp|P58308|OX2R_MOUSE Orexin receptor type 2 OS=Mus musculus GN=Hcrtr2 PE=2 SV=2

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 44/57 (77%)

Query: 57  FRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVP 113
           + + +I+ Y ++FV++L+GN LVC AV  +  M+TVTN+FI+NLS  D+++T+ C+P
Sbjct: 53  YEWVLIAGYIIVFVVALIGNVLVCVAVWKNHHMRTVTNYFIVNLSLADVLVTITCLP 109

Nonselective, high-affinity receptor for both orexin-A and orexin-B neuropeptides.

Mus musculus (taxid: 10090)

>sp|Q0GBZ5|OX1R_BOVIN Orexin receptor type 1 OS=Bos taurus GN=HCRTR1 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 44/62 (70%)

Query: 57  FRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSR 116
           + + +I+ Y  +F ++L+GN LVC AV  +  M+TVTN+FI+NLS  D+++T  C+P S 
Sbjct: 45  YEWVLIAAYVAVFFVALVGNTLVCLAVWRNHHMRTVTNYFIVNLSLADVLVTAICLPASL 104

Query: 117 LL 118
           L+
Sbjct: 105 LV 106

Moderately selective excitatory receptor for orexin-A and, with a lower affinity, for orexin-B neuropeptide. Seems to be exclusively coupled to the G(q) subclass of heteromeric G proteins, which activates the phospholipase C mediated signaling cascade.

Bos taurus (taxid: 9913)

>sp|O43614|OX2R_HUMAN Orexin receptor type 2 OS=Homo sapiens GN=HCRTR2 PE=2 SV=2

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 44/57 (77%)

Query: 57  FRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVP 113
           + + +I+ Y ++FV++L+GN LVC AV  +  M+TVTN+FI+NLS  D+++T+ C+P
Sbjct: 53  YEWVLIAGYIIVFVVALIGNVLVCVAVWKNHHMRTVTNYFIVNLSLADVLVTITCLP 109

Nonselective, high-affinity receptor for both orexin-A and orexin-B neuropeptides.

Homo sapiens (taxid: 9606)

>sp|Q9TUP7|OX2R_CANFA Orexin receptor type 2 OS=Canis familiaris GN=HCRTR2 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 44/57 (77%)

Query: 57  FRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVP 113
           + + +I+ Y ++FV++L+GN LVC AV  +  M+TVTN+FI+NLS  D+++T+ C+P
Sbjct: 53  YEWVLIAGYIIVFVVALVGNVLVCVAVWKNHHMRTVTNYFIVNLSLADVLVTITCLP 109

Nonselective, high-affinity receptor for both orexin-A and orexin-B neuropeptides.

Canis familiaris (taxid: 9615)

>sp|Q9EP86|NPFF1_RAT Neuropeptide FF receptor 1 OS=Rattus norvegicus GN=Npffr1 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 42/52 (80%)

Query: 62  ISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVP 113
           I+ Y +IF++ ++GN LVC+ VL ++ M+TVTN FI+NL+ +D+++ +FC+P
Sbjct: 47  IAAYVLIFLLCMVGNTLVCFIVLKNRHMRTVTNMFILNLAVSDLLVGIFCMP 98

Receptor for NPAF (A-18-F-amide) and NPFF (F-8-F-amide) neuropeptides, also known as morphine-modulating peptides. Can also be activated by a variety of naturally occurring or synthetic FMRF-amide like ligands. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
328701469	416	PREDICTED: neuropeptide Y receptor-like	0.579	0.165	0.492	8e-14
197209912	394	neuropeptide receptor A22 [Bombyx mori]	0.537	0.162	0.562	8e-14
197209906	446	neuropeptide receptor A19 [Bombyx mori]	0.495	0.132	0.576	2e-13
383853852	434	PREDICTED: neuropeptide Y receptor-like	0.605	0.165	0.52	8e-13
380014215	415	PREDICTED: neuropeptide Y receptor-like	0.563	0.161	0.537	1e-12
350412452	432	PREDICTED: neuropeptide Y receptor-like	0.588	0.162	0.514	2e-12
340720847	285	PREDICTED: neuropeptide Y receptor-like	0.605	0.252	0.5	2e-12
110764421	768	PREDICTED: hypothetical protein LOC41161	0.579	0.089	0.521	3e-12
325494721	367	RYamide receptor [Tribolium castaneum]	0.495	0.160	0.559	3e-11
270002822	415	hypothetical protein TcasGA2_TC001056 [T	0.495	0.142	0.559	4e-11

>gi|328701469|ref|XP_001946360.2| PREDICTED: neuropeptide Y receptor-like [Acyrthosiphon pisum]

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/69 (49%), Positives = 53/69 (76%)

Query: 47  ELDGVMAVPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDII 106
           E++GV+    F+  V   Y+++FV+SL+GNGLVC+ V+ S +M +VTN FI+N++  D++
Sbjct: 38  EIEGVLGTAAFQTLVYLTYTIVFVVSLVGNGLVCHVVMFSAQMHSVTNLFIMNMAVGDLL 97

Query: 107 LTLFCVPFS 115
           +TLFCVPFS
Sbjct: 98  MTLFCVPFS 106

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|197209912|ref|NP_001127720.1| neuropeptide receptor A22 [Bombyx mori] gi|195947014|dbj|BAG68421.1| neuropeptide receptor A22 [Bombyx mori]

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 51/64 (79%)

Query: 52  MAVPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFC 111
           ++ P+F+  V   YS +F+++LLGNGLVC+ V  S +MKTVTN+FI+NL+  DI++TLFC
Sbjct: 57  LSSPVFQICVYFMYSAVFLVALLGNGLVCFIVHTSPRMKTVTNYFIVNLAVGDILMTLFC 116

Query: 112 VPFS 115
           VPFS
Sbjct: 117 VPFS 120

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|197209906|ref|NP_001127717.1| neuropeptide receptor A19 [Bombyx mori] gi|195947008|dbj|BAG68418.1| neuropeptide receptor A19 [Bombyx mori]

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 57  FRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
           F+  V   Y ++FV++L+GNGLVC+ V  S +MKTVTN+FI+NL+  DI++TLFCVPFS
Sbjct: 64  FQTCVYFMYCIVFVVALVGNGLVCFVVQTSPRMKTVTNYFIVNLAVGDILMTLFCVPFS 122

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853852|ref|XP_003702436.1| PREDICTED: neuropeptide Y receptor-like [Megachile rotundata]

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 3/75 (4%)

Query: 44  NCDELDG---VMAVPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINL 100
            CD   G   + +   F+  +  FYS IFV++L GNGLVCY V  S +MKTVTNFFI+NL
Sbjct: 28  GCDYFTGTYRIFSTSWFQGIIYFFYSAIFVVALAGNGLVCYVVYSSPRMKTVTNFFIVNL 87

Query: 101 STNDIILTLFCVPFS 115
           +  DI++ LFCVP S
Sbjct: 88  AFGDILIALFCVPPS 102

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380014215|ref|XP_003691135.1| PREDICTED: neuropeptide Y receptor-like [Apis florea]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 47/67 (70%)

Query: 49  DGVMAVPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILT 108
            G+ +   FR  +   YS +FV++L GNGLVCY V  S +MKTVTNFFI+NL+  DI++ 
Sbjct: 31  QGIFSTSWFRGIIYFVYSTVFVVALTGNGLVCYVVHSSPRMKTVTNFFIVNLALGDILIA 90

Query: 109 LFCVPFS 115
           LFCVP S
Sbjct: 91  LFCVPTS 97

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350412452|ref|XP_003489650.1| PREDICTED: neuropeptide Y receptor-like [Bombus impatiens]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 47/70 (67%)

Query: 46  DELDGVMAVPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDI 105
            E   + +   FR  +   YS +FV++L GNGLVCY V  S +MKTVTNFFI+NL+  DI
Sbjct: 32  SESQSIFSTKWFRSIICFLYSTVFVVALTGNGLVCYVVHSSPRMKTVTNFFIVNLAFGDI 91

Query: 106 ILTLFCVPFS 115
           ++ LFCVP S
Sbjct: 92  LMALFCVPTS 101

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720847|ref|XP_003398841.1| PREDICTED: neuropeptide Y receptor-like [Bombus terrestris]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 48/72 (66%)

Query: 46  DELDGVMAVPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDI 105
            E   + +   FR  +   YS +FV++L GNGLVCY V  S +MKTVTNFFI+NL+  DI
Sbjct: 32  SESQSIFSTKWFRSIICFLYSTVFVVALTGNGLVCYVVHSSPRMKTVTNFFIVNLAFGDI 91

Query: 106 ILTLFCVPFSRL 117
           ++ LFCVP S +
Sbjct: 92  LMALFCVPTSSI 103

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110764421|ref|XP_395084.3| PREDICTED: hypothetical protein LOC411614 [Apis mellifera]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 47/69 (68%)

Query: 47  ELDGVMAVPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDII 106
           E   + +   FR  +   YS +FV++L GNGLVCY V  S +MKTVTNFFI+NL+  DI+
Sbjct: 371 ESQSIFSTNWFRGIIYFVYSTVFVVALTGNGLVCYVVHSSPRMKTVTNFFIVNLALGDIL 430

Query: 107 LTLFCVPFS 115
           + LFCVP S
Sbjct: 431 IALFCVPTS 439

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|325494721|gb|ADZ17181.1| RYamide receptor [Tribolium castaneum]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 46/59 (77%)

Query: 57  FRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
           F  +V S Y++IFV++L+GN  VCY VL S  M+TVTNFFI+NL+  D+++TL CVPF+
Sbjct: 29  FLSAVYSMYAIIFVVALIGNSFVCYIVLSSPPMRTVTNFFILNLAIGDVLITLLCVPFT 87

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002822|gb|EEZ99269.1| hypothetical protein TcasGA2_TC001056 [Tribolium castaneum]

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 46/59 (77%)

Query: 57  FRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
           F  +V S Y++IFV++L+GN  VCY VL S  M+TVTNFFI+NL+  D+++TL CVPF+
Sbjct: 29  FLSAVYSMYAIIFVVALIGNSFVCYIVLSSPPMRTVTNFFILNLAIGDVLITLLCVPFT 87

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
UNIPROTKB|F1NVD9	422	NPFFR2 "Uncharacterized protei	0.781	0.220	0.405	4.1e-12
ZFIN|ZDB-GENE-060526-183	422	npffr2.1 "neuropeptide FF rece	0.865	0.244	0.355	8.7e-12
FB|FBgn0004842	464	NepYr "Neuropeptide Y receptor	0.613	0.157	0.402	2.9e-11
ZFIN|ZDB-GENE-060526-54	364	kiss1rb "KISS1 receptor b" [Da	0.655	0.214	0.402	7.7e-11
ZFIN|ZDB-GENE-070705-159	438	npffr2.2 "neuropeptide FF rece	0.747	0.203	0.373	8.9e-11
ZFIN|ZDB-GENE-060526-110	480	npffr1l2 "neuropeptide FF rece	0.781	0.193	0.352	1.1e-10
ZFIN|ZDB-GENE-070228-3	424	hcrtr2 "hypocretin (orexin) re	0.495	0.139	0.474	1.4e-10
UNIPROTKB|A6NMV7	389	HCRTR1 "Orexin receptor type 1	0.680	0.208	0.411	1.5e-10
UNIPROTKB|O43613	425	HCRTR1 "Orexin receptor type 1	0.680	0.190	0.411	1.8e-10
UNIPROTKB|F1NWK9	501	HCRTR2 "Uncharacterized protei	0.478	0.113	0.473	2.4e-10

UNIPROTKB|F1NVD9 NPFFR2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 170 (64.9 bits), Expect = 4.1e-12, P = 4.1e-12
 Identities = 41/101 (40%), Positives = 65/101 (64%)

Query:    25 EHFSETSKNYS-LLPYPPIYNCDELDG-VMAVPLFRY--SV----ISFYSVIFVMSLLGN 76
             E +S +S N+  LL Y   Y    L+G V  V  + +  SV    I+ Y +IF++ ++GN
Sbjct:     4 ETYSNSSFNWPHLLSYNGTYKYLYLEGNVSYVDFYHHQPSVAAVFIASYLLIFLLCMVGN 63

Query:    77 GLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSRL 117
             G+VCY VL S+ M+TVTN FI+NL+ +D+++ +FC+P + L
Sbjct:    64 GVVCYTVLRSKHMRTVTNLFILNLAVSDLLVGIFCMPTTLL 104

GO:0008188 "neuropeptide receptor activity" evidence=IEA

GO:0031628 "opioid receptor binding" evidence=IEA

GO:0043408 "regulation of MAPK cascade" evidence=IEA

GO:0045761 "regulation of adenylate cyclase activity" evidence=IEA

GO:2000479 "regulation of cAMP-dependent protein kinase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

ZFIN|ZDB-GENE-060526-183 npffr2.1 "neuropeptide FF receptor 2.1" [Danio rerio (taxid:7955)]

 Score = 167 (63.8 bits), Expect = 8.7e-12, P = 8.7e-12
 Identities = 37/104 (35%), Positives = 65/104 (62%)

Query:    14 EQLNVNLTLFIEHFSETSKNYSLLPYPPIYNCDELDGVMAVPLFRYSVISFYSVIFVMSL 73
             E L++N+TL ++  + T  N S   + P+ N   +   +  P      I  Y +IF++ +
Sbjct:     3 ESLDLNITL-VDDGNWTFINGSSEFFLPLNNITYVGYYLHQPSVAAVFIVSYLLIFLVCM 61

Query:    74 LGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSRL 117
             +GNG+VC+ VL S+ M+TVTN FI+NL+ +D+++ +FC+P + L
Sbjct:    62 IGNGVVCFIVLRSKNMRTVTNLFILNLAISDLLVGIFCMPTTLL 105

GO:0043408 "regulation of MAPK cascade" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0008188 "neuropeptide receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:2000479 "regulation of cAMP-dependent protein kinase activity" evidence=IEA

GO:0045761 "regulation of adenylate cyclase activity" evidence=IEA

GO:0031628 "opioid receptor binding" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

FB|FBgn0004842 NepYr "Neuropeptide Y receptor-like" [Drosophila melanogaster (taxid:7227)]

 Score = 163 (62.4 bits), Expect = 2.9e-11, P = 2.9e-11
 Identities = 31/77 (40%), Positives = 49/77 (63%)

Query:    43 YNCDELD----GVMAVPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFII 98
             ++CD+ D     + +   F+  V   Y  IF+ +L+GNG VCY V  + +M+TVTN+FI 
Sbjct:    86 FSCDDYDLLSEDMWSSAYFKIIVYMLYIPIFIFALIGNGTVCYIVYSTPRMRTVTNYFIA 145

Query:    99 NLSTNDIILTLFCVPFS 115
             +L+  DI+++ FCVP S
Sbjct:   146 SLAIGDILMSFFCVPSS 162

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0004983 "neuropeptide Y receptor activity" evidence=IEA;NAS

GO:0004930 "G-protein coupled receptor activity" evidence=NAS

GO:0004995 "tachykinin receptor activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0007217 "tachykinin receptor signaling pathway" evidence=ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0008188 "neuropeptide receptor activity" evidence=ISS

GO:0007166 "cell surface receptor signaling pathway" evidence=IDA

GO:0001653 "peptide receptor activity" evidence=IPI

ZFIN|ZDB-GENE-060526-54 kiss1rb "KISS1 receptor b" [Danio rerio (taxid:7955)]

 Score = 157 (60.3 bits), Expect = 7.7e-11, P = 7.7e-11
 Identities = 33/82 (40%), Positives = 54/82 (65%)

Query:    42 IYNCDELDGVM---AVPLF-RYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFI 97
             IY C++ D +     VPL   + V  F+++I  + L+GN +V Y V+ +Q+MKTVTN +I
Sbjct:    22 IYQCNQTDLMRFQSPVPLTDTWLVPLFFTLIMFVGLVGNLIVIYVVIKNQQMKTVTNLYI 81

Query:    98 INLSTNDIILTLFCVPFSRLLH 119
             +NL+T DI+  + CVPF+  ++
Sbjct:    82 VNLATTDILFLVCCVPFTATVY 103

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0008188 "neuropeptide receptor activity" evidence=IDA

ZFIN|ZDB-GENE-070705-159 npffr2.2 "neuropeptide FF receptor 2.2" [Danio rerio (taxid:7955)]

 Score = 158 (60.7 bits), Expect = 8.9e-11, P = 8.9e-11
 Identities = 34/91 (37%), Positives = 55/91 (60%)

Query:    24 IEHFSETSKNYSLLPYPPIY-NCDELDGVMAVPLFRYSVISFYSVIFVMSLLGNGLVCYA 82
             +E+    S N S    P  Y N   +D  +  P      I  Y +IF++ ++GNG+VC+ 
Sbjct:    10 LENGQNISVNRSTFR-PNYYTNITYVDFYLHEPFVSAIFIVSYLLIFIVCMMGNGVVCFI 68

Query:    83 VLVSQKMKTVTNFFIINLSTNDIILTLFCVP 113
             VL S+ M+TVTN FI+NL+ +D+++ +FC+P
Sbjct:    69 VLRSKNMRTVTNLFILNLAISDLLVGIFCMP 99

GO:0045761 "regulation of adenylate cyclase activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0008188 "neuropeptide receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031628 "opioid receptor binding" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0043408 "regulation of MAPK cascade" evidence=IEA

GO:2000479 "regulation of cAMP-dependent protein kinase activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

ZFIN|ZDB-GENE-060526-110 npffr1l2 "neuropeptide FF receptor 1 like 2" [Danio rerio (taxid:7955)]

 Score = 158 (60.7 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 36/102 (35%), Positives = 63/102 (61%)

Query:    13 LEQLNVNLTLFIEHFSETSK-NYSLLPYPPIYNCDELDGVMAVPLFRYSVISFYSVIFVM 71
             L  L++N++L   + + ++  N+S + Y P Y    L    A+ L        Y  IF++
Sbjct:    10 LTTLDMNISLSNAYTNNSNATNHSSITYYPYYQ-HSLPVAAALTLA-------YLFIFLL 61

Query:    72 SLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVP 113
              ++GNGLVC  VL +++M+TVTN FI+NL+ +D+++ +FC+P
Sbjct:    62 CMVGNGLVCLIVLENRRMRTVTNLFILNLAVSDLLVGVFCIP 103

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0008188 "neuropeptide receptor activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

ZFIN|ZDB-GENE-070228-3 hcrtr2 "hypocretin (orexin) receptor 2" [Danio rerio (taxid:7955)]

 Score = 156 (60.0 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 28/59 (47%), Positives = 46/59 (77%)

Query:    57 FRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
             + + +I+ Y ++F++SL+GN LVC+AV  +  M+TVTN+FI+NLS  DI++T+ C+P S
Sbjct:    53 YEWVLIAGYILVFLVSLVGNTLVCFAVWKNHHMRTVTNYFIVNLSFADILVTITCLPAS 111

GO:0016499 "orexin receptor activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007631 "feeding behavior" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0030186 "melatonin metabolic process" evidence=IMP

GO:0048512 "circadian behavior" evidence=IMP

GO:0045187 "regulation of circadian sleep/wake cycle, sleep" evidence=IMP

UNIPROTKB|A6NMV7 HCRTR1 "Orexin receptor type 1" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 35/85 (41%), Positives = 54/85 (63%)

Query:    38 PYPPIYNCDELDGVMAVPLF--RYS--VISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVT 93
             P PP Y  + L  +    L+  +Y   +I+ Y  +FV++L+GN LVC AV  +  M+TVT
Sbjct:    22 PVPPDYEDEFLRYLWRDYLYPKQYEWVLIAAYVAVFVVALVGNTLVCLAVWRNHHMRTVT 81

Query:    94 NFFIINLSTNDIILTLFCVPFSRLL 118
             N+FI+NLS  D+++T  C+P S L+
Sbjct:    82 NYFIVNLSLADVLVTAICLPASLLV 106

GO:0007631 "feeding behavior" evidence=IEA

GO:0016499 "orexin receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|O43613 HCRTR1 "Orexin receptor type 1" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 35/85 (41%), Positives = 54/85 (63%)

Query:    38 PYPPIYNCDELDGVMAVPLF--RYS--VISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVT 93
             P PP Y  + L  +    L+  +Y   +I+ Y  +FV++L+GN LVC AV  +  M+TVT
Sbjct:    22 PVPPDYEDEFLRYLWRDYLYPKQYEWVLIAAYVAVFVVALVGNTLVCLAVWRNHHMRTVT 81

Query:    94 NFFIINLSTNDIILTLFCVPFSRLL 118
             N+FI+NLS  D+++T  C+P S L+
Sbjct:    82 NYFIVNLSLADVLVTAICLPASLLV 106

GO:0007631 "feeding behavior" evidence=IEA

GO:0016499 "orexin receptor activity" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0017046 "peptide hormone binding" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

UNIPROTKB|F1NWK9 HCRTR2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 155 (59.6 bits), Expect = 2.4e-10, P = 2.4e-10
 Identities = 27/57 (47%), Positives = 45/57 (78%)

Query:    57 FRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVP 113
             + +++I+ Y V+F+++L+GN LVC AV  +  M+TVTN+FI+NLS  DI++T+ C+P
Sbjct:    55 YEWALIAGYIVVFIVALVGNVLVCIAVWKNHHMRTVTNYFIVNLSLADILVTITCLP 111

GO:0007631 "feeding behavior" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016499 "orexin receptor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	119
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	6e-04
PHA03087	335	PHA03087, PHA03087, G protein-coupled chemokine re	0.002
PHA02638	417	PHA02638, PHA02638, CC chemokine receptor-like pro	0.003

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 11/35 (31%), Positives = 23/35 (65%)

Query: 81  YAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
             +L ++K++T TN F++NL+  D++  L   P++
Sbjct: 1   LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWA 35

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 60  SVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTL 109
            +I  YS IF   L+GN +V Y VL   K+KT  + +++NL+ +D++  +
Sbjct: 42  ILIVVYSTIFFFGLVGNIIVIY-VLTKTKIKTPMDIYLLNLAVSDLLFVM 90

Length = 335

>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 64  FYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTL 109
           FY +IF++ L GN  +   +L  +K+KT+T+ +I NL+ +D+I  +
Sbjct: 104 FYIIIFILGLFGNAAII-MILFCKKIKTITDIYIFNLAISDLIFVI 148

Length = 417

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
PHA03234	338	DNA packaging protein UL33; Provisional	99.25
KOG4219|consensus	423		99.2
PHA02638	417	CC chemokine receptor-like protein; Provisional	98.94
PHA02834	323	chemokine receptor-like protein; Provisional	98.92
PHA03235	409	DNA packaging protein UL33; Provisional	98.84
PHA03087	335	G protein-coupled chemokine receptor-like protein;	98.78
KOG4220|consensus	503		98.71
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	98.32
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	98.17
KOG2087|consensus	363		96.64
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	95.38
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	95.3
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	94.26
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	93.91
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	92.81
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	88.73
PF11710	201	Git3: G protein-coupled glucose receptor regulatin	85.2

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.25  E-value=1.2e-11  Score=92.40  Aligned_cols=60  Identities=18%  Similarity=0.281  Sum_probs=51.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCCchHHHHHHHHHHHHHHHHhhhhccccc
Q psy14840         57 FRYSVISFYSVIFVMSLLGNGLVCYAV--LVSQKMKTVTNFFIINLSTNDIILTLFCVPFSRL  117 (119)
Q Consensus        57 ~~~~~~~~~~~i~~~~~~gN~lvi~v~--~~~~~l~~~~~~fl~nLa~~Dll~~~~~~P~~~~  117 (119)
                      .+.++.++|.+++++|++||++|++++  .+++++|+++|+|+.|||++|+++++ +.|+.+.
T Consensus        31 ~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l-~lp~~~~   92 (338)
T PHA03234         31 AQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHML-CVFFLTL   92 (338)
T ss_pred             HHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            467889999999999999999999955  45567799999999999999999987 5666543

>KOG4219|consensus

Probab=99.20  E-value=6.8e-12  Score=94.43  Aligned_cols=66  Identities=24%  Similarity=0.478  Sum_probs=59.8

Q ss_pred             CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhcccc
Q psy14840         51 VMAVPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSR  116 (119)
Q Consensus        51 ~~~~~~~~~~~~~~~~~i~~~~~~gN~lvi~v~~~~~~l~~~~~~fl~nLa~~Dll~~~~~~P~~~  116 (119)
                      +....+.+.+..++|.++.+++++||++|+|++..+|++|+.+|+|++|||+||++.++++.|+..
T Consensus        28 f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f   93 (423)
T KOG4219|consen   28 FVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNF   93 (423)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            444556678899999999999999999999999999999999999999999999999999888743

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=98.94  E-value=2.4e-09  Score=82.15  Aligned_cols=59  Identities=31%  Similarity=0.644  Sum_probs=51.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhccccc
Q psy14840         57 FRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSRL  117 (119)
Q Consensus        57 ~~~~~~~~~~~i~~~~~~gN~lvi~v~~~~~~l~~~~~~fl~nLa~~Dll~~~~~~P~~~~  117 (119)
                      ....+..++.+++++|++||+++++++.+ |++|++++++++|||++|+++.. +.|+++.
T Consensus        97 ~~~~l~~~y~lvfvlgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~~l-~lPf~i~  155 (417)
T PHA02638         97 ISEYIKIFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIFVI-DFPFIIY  155 (417)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            46778888999999999999999987654 78899999999999999999865 8898764

>PHA02834 chemokine receptor-like protein; Provisional

Probab=98.92  E-value=3.4e-09  Score=78.58  Aligned_cols=57  Identities=35%  Similarity=0.725  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhcccc
Q psy14840         58 RYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSR  116 (119)
Q Consensus        58 ~~~~~~~~~~i~~~~~~gN~lvi~v~~~~~~l~~~~~~fl~nLa~~Dll~~~~~~P~~~  116 (119)
                      +.+..+++.+++++|++||+++++++.+++++ +++|+|+.|||++|++. ..++|+.+
T Consensus        28 ~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~~-~~~n~~i~nLAiaDll~-~~~lP~~i   84 (323)
T PHA02834         28 NYFVIVFYILLFIFGLIGNVLVIAVLIVKRFM-FVVDVYLFNIAMSDLML-VFSFPFII   84 (323)
T ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHHHHhcccc-chhhhhhHHHHHHHHHH-HHHHHHHH
Confidence            56788999999999999999999998886664 57899999999999987 44888754

>PHA03235 DNA packaging protein UL33; Provisional

Probab=98.84  E-value=1.3e-08  Score=77.94  Aligned_cols=59  Identities=17%  Similarity=0.257  Sum_probs=47.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CchHHHHHHHHHHHHHHHHhhhhcccc
Q psy14840         57 FRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKM--KTVTNFFIINLSTNDIILTLFCVPFSR  116 (119)
Q Consensus        57 ~~~~~~~~~~~i~~~~~~gN~lvi~v~~~~~~l--~~~~~~fl~nLa~~Dll~~~~~~P~~~  116 (119)
                      .+....+++.+++++|++||+++++++.+++++  ++..++|++|||++|++. ++++|+.+
T Consensus        31 ~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i   91 (409)
T PHA03235         31 ARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIM   91 (409)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHH
Confidence            467888999999999999999999986543332  356679999999999987 45888764

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=98.78  E-value=1.1e-08  Score=75.81  Aligned_cols=58  Identities=31%  Similarity=0.618  Sum_probs=50.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhcccc
Q psy14840         57 FRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSR  116 (119)
Q Consensus        57 ~~~~~~~~~~~i~~~~~~gN~lvi~v~~~~~~l~~~~~~fl~nLa~~Dll~~~~~~P~~~  116 (119)
                      .+....+++.+++++|++||+++++++.++ ++|++.++++.|||++|++.++ ..|..+
T Consensus        39 ~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~-~~~~~~   96 (335)
T PHA03087         39 NSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVM-TLPFQI   96 (335)
T ss_pred             hhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHH-hHHHHH
Confidence            466788899999999999999999998888 8899999999999999998876 566543

>KOG4220|consensus

Probab=98.71  E-value=5.6e-10  Score=84.66  Aligned_cols=61  Identities=21%  Similarity=0.425  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhcccccc
Q psy14840         58 RYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSRLL  118 (119)
Q Consensus        58 ~~~~~~~~~~i~~~~~~gN~lvi~v~~~~~~l~~~~~~fl~nLa~~Dll~~~~~~P~~~~~  118 (119)
                      ...+.++...+.++.++||++|++.+..+++||+..|||+++||+|||+++.+.+|+..+|
T Consensus        30 ~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y   90 (503)
T KOG4220|consen   30 VVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTY   90 (503)
T ss_pred             EEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHH
Confidence            4566778888999999999999999999999999999999999999999999999987654

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.32  E-value=6.3e-07  Score=62.18  Aligned_cols=42  Identities=38%  Similarity=0.789  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhcccc
Q psy14840         75 GNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSR  116 (119)
Q Consensus        75 gN~lvi~v~~~~~~l~~~~~~fl~nLa~~Dll~~~~~~P~~~  116 (119)
                      ||.++++++.++|++|++.++|+.|||++|++.++...|..+
T Consensus         1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~   42 (257)
T PF00001_consen    1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYI   42 (257)
T ss_dssp             HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccc
Confidence            899999999999999999999999999999999997777644

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.17  E-value=5.3e-07  Score=65.10  Aligned_cols=46  Identities=24%  Similarity=0.410  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhccc
Q psy14840         70 VMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS  115 (119)
Q Consensus        70 ~~~~~gN~lvi~v~~~~~~l~~~~~~fl~nLa~~Dll~~~~~~P~~  115 (119)
                      ++|++||..++.++.++|++|+|++++++.+|++|++.....+|..
T Consensus         2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~   47 (257)
T PF10320_consen    2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFM   47 (257)
T ss_pred             EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHH
Confidence            4688999999999999999999999999999999999988777754

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>KOG2087|consensus

Probab=96.64  E-value=0.00058  Score=51.48  Aligned_cols=50  Identities=24%  Similarity=0.358  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhh
Q psy14840         61 VISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLF  110 (119)
Q Consensus        61 ~~~~~~~i~~~~~~gN~lvi~v~~~~~~l~~~~~~fl~nLa~~Dll~~~~  110 (119)
                      +-+.-.++.++++.||.+|++.....+...+...++++|||++|++.++.
T Consensus        27 lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiY   76 (363)
T KOG2087|consen   27 LRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIY   76 (363)
T ss_pred             eeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchH
Confidence            33445677888999999999998888877788899999999999999863

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=95.38  E-value=0.14  Score=37.97  Aligned_cols=54  Identities=19%  Similarity=0.391  Sum_probs=42.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCchHHHHHHHHHHHHHHHHhh
Q psy14840         57 FRYSVISFYSVIFVMSLLGNGLVCYAVL---VSQKMKTVTNFFIINLSTNDIILTLF  110 (119)
Q Consensus        57 ~~~~~~~~~~~i~~~~~~gN~lvi~v~~---~~~~l~~~~~~fl~nLa~~Dll~~~~  110 (119)
                      .+....++..+.+++|++||+.++.+..   +++|.-.|.+..+.+||++.++.-..
T Consensus         5 ~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~   61 (303)
T PF05296_consen    5 LEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWV   61 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHH
Confidence            3566778888999999999999887654   33444468999999999999887653

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.30  E-value=0.036  Score=40.11  Aligned_cols=43  Identities=16%  Similarity=0.292  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhh
Q psy14840         68 IFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLF  110 (119)
Q Consensus        68 i~~~~~~gN~lvi~v~~~~~~l~~~~~~fl~nLa~~Dll~~~~  110 (119)
                      +.+.|++.|.++++.+.+.+++|++.+..-.+.|++|.+.+++
T Consensus         3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~   45 (274)
T PF10328_consen    3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLI   45 (274)
T ss_pred             eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHH
Confidence            4567999999999999999999999999999999999998873

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.26  E-value=0.047  Score=40.16  Aligned_cols=48  Identities=15%  Similarity=0.279  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHHHHHhhhhcccc
Q psy14840         68 IFVMSLLGNGLVCYAVLVSQKMKT-VTNFFIINLSTNDIILTLFCVPFSR  116 (119)
Q Consensus        68 i~~~~~~gN~lvi~v~~~~~~l~~-~~~~fl~nLa~~Dll~~~~~~P~~~  116 (119)
                      +.++|+++|..-+.+. .+|.+|+ ++|.++..+|++|++..+..++..+
T Consensus         6 ~~~~g~~~N~~h~~VL-trk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~   54 (318)
T PF10324_consen    6 LSIFGLFINIFHLIVL-TRKSMRSSSINILLIGIAICDLLYMLSILIWEL   54 (318)
T ss_pred             EeHHHHHHHHHHhhhc-CChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567999999887666 4566775 8999999999999999887666543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=93.91  E-value=0.28  Score=36.53  Aligned_cols=52  Identities=19%  Similarity=0.268  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHh
Q psy14840         58 RYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTL  109 (119)
Q Consensus        58 ~~~~~~~~~~i~~~~~~gN~lvi~v~~~~~~l~~~~~~fl~nLa~~Dll~~~  109 (119)
                      ...+.++..+...++++|-++++....+.|++|++.+-++.-++++|++..+
T Consensus         6 ~~~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v   57 (303)
T PF05462_consen    6 IRTLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNV   57 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence            3455666677788899999999999999999999999999999999998654

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=92.81  E-value=0.8  Score=34.27  Aligned_cols=52  Identities=13%  Similarity=0.097  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHh
Q psy14840         58 RYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTL  109 (119)
Q Consensus        58 ~~~~~~~~~~i~~~~~~gN~lvi~v~~~~~~l~~~~~~fl~nLa~~Dll~~~  109 (119)
                      +..+...+.+..++..+-....+.++.++++.|.+.|-...-||+.|++...
T Consensus        32 ~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~   83 (313)
T PF10321_consen   32 RPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLF   83 (313)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHH
Confidence            5666677777777777778888888888888889999999999999999865

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=88.73  E-value=1.5  Score=32.16  Aligned_cols=47  Identities=15%  Similarity=0.357  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHHHHhh
Q psy14840         64 FYSVIFVMSLLGNGLVCYAVLVSQKM-KTVTNFFIINLSTNDIILTLF  110 (119)
Q Consensus        64 ~~~~i~~~~~~gN~lvi~v~~~~~~l-~~~~~~fl~nLa~~Dll~~~~  110 (119)
                      ++.+.+.+|+.-|.++++.+.++.-. -....+++.|-|+.|++.++.
T Consensus         4 ~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~   51 (292)
T PF10317_consen    4 YHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIIS   51 (292)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677889999999999887765533 356788999999999998763

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=85.20  E-value=3.7  Score=28.71  Aligned_cols=25  Identities=24%  Similarity=0.328  Sum_probs=19.2

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHhhh
Q psy14840         87 QKMKTVTNFFIINLSTNDIILTLFC  111 (119)
Q Consensus        87 ~~l~~~~~~fl~nLa~~Dll~~~~~  111 (119)
                      +++|..-+.++.||.++|++-++..
T Consensus        30 ~r~~~fR~~LIl~L~~aD~~qal~~   54 (201)
T PF11710_consen   30 YRRRSFRHQLILNLLLADFIQALAF   54 (201)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            4445656679999999999988753

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	119
4eiy_A	447	Crystal Structure Of The Chimeric Protein Of A2aar-		2e-07
3eml_A	488	The 2.6 A Crystal Structure Of A Human A2a Adenosin		3e-07
3pwh_A	329	Thermostabilised Adenosine A2a Receptor Length = 32		7e-07
3vg9_A	326	Crystal Structure Of Human Adenosine A2a Receptor W		1e-06
2ydo_A	325	Thermostabilised Human A2a Receptor With Adenosine		2e-06
4ea3_B	434	Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI		2e-06
4djh_A	480	Structure Of The Human Kappa Opioid Receptor In Com		3e-06
3pbl_A	481	Structure Of The Human Dopamine D3 Receptor In Comp		3e-05
4dkl_A	464	Crystal Structure Of The Mu-Opioid Receptor Bound T		6e-05
3sn6_R	514	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-04
2rh1_A	500	High Resolution Crystal Structure Of Human B2-Adren		2e-04
3p0g_A	501	Structure Of A Nanobody-Stabilized Active State Of		2e-04
3d4s_A	490	Cholesterol Bound Form Of Human Beta2 Adrenergic Re		2e-04
3kj6_A	366	Crystal Structure Of A Methylated Beta2 Adrenergic		2e-04
3pds_A	458	Irreversible Agonist-Beta2 Adrenoceptor Complex Len		3e-04
4ej4_A	461	Structure Of The Delta Opioid Receptor Bound To Nal		3e-04
2vt4_A	313	Turkey Beta1 Adrenergic Receptor With Stabilising M		6e-04
2y00_B	315	Turkey Beta1 Adrenergic Receptor With Stabilising M		7e-04
2r4r_A	365	Crystal Structure Of The Human Beta2 Adrenoceptor L		8e-04
2r4s_A	342	Crystal Structure Of The Human Beta2 Adrenoceptor L		9e-04

>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In Complex With Zm241385 At 1.8a Resolution Length = 447

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Query: 46  DELDGVMAVPLFRYSV-ISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTND 104
           D+ DG  A P+   SV I+    I V+++LGN LVC+AV ++  ++ VTN+F+++L+  D
Sbjct: 20  DDDDG--APPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAAD 77
Query: 105 IILTLFCVPFS 115
           I + +  +PF+
Sbjct: 78  IAVGVLAIPFA 88

>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine Receptor Bound To Zm241385. Length = 488

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 51  VMAVPLFRYSV-ISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTL 109
           V A P+   SV I+    I V+++LGN LVC+AV ++  ++ VTN+F+++L+  DI + +
Sbjct: 13  VGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGV 72
Query: 110 FCVPFS 115
             +PF+
Sbjct: 73  LAIPFA 78

>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 37/49 (75%)
Query: 67  VIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
            I V+++LGN LVC+AV ++  ++ VTN+F+++L+  DI++ +  +PF+
Sbjct: 15  AIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFA 63

>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 36/48 (75%)
Query: 68  IFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
           I V+++LGN LVC+AV ++  ++ VTN+F+++L+  DI + +  +PF+
Sbjct: 16  IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFA 63

>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 36/49 (73%)
Query: 67  VIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
            I V+++LGN LVC+AV ++  ++ VTN+F+++ +  DI++ +  +PF+
Sbjct: 15  AIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFA 63

>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 54  VPL-FRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCV 112
           +PL  + +++  Y  + V  LLGN LV Y +L   KMKT TN +I NL+  D  L L  +
Sbjct: 120 LPLGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALAD-TLVLLTL 178
Query: 113 PF 114
           PF
Sbjct: 179 PF 180

>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 53  AVPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCV 112
           A+P+    + + YSV+FV+ L+GN LV + ++   KMKT TN +I NL+  D ++T   +
Sbjct: 20  AIPVI---ITAVYSVVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVTT-TM 75
Query: 113 PFS 115
           PF 
Sbjct: 76  PFQ 78

>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 59  YSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPF 114
           Y  +S+ ++I  + + GNGLVC AVL  + ++T TN+ +++L+  D+++    +P+
Sbjct: 40  YYALSYCALILAI-VFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPW 94

>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 60  SVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILT 108
           ++++ YS++ V+ L GN LV Y ++   KMKT TN +I NL+  D + T
Sbjct: 19  TIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALAT 67

>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 66  SVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPF 114
           S+I +  + GN LV  A+   ++++TVTN+FI +L+  D+++ L  VPF
Sbjct: 190 SLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPF 238

>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 66  SVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPF 114
           S+I +  + GN LV  A+   ++++TVTN+FI +L+  D+++ L  VPF
Sbjct: 48  SLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPF 96

>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 66  SVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPF 114
           S+I +  + GN LV  A+   ++++TVTN+FI +L+  D+++ L  VPF
Sbjct: 49  SLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPF 97

>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 66  SVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPF 114
           S+I +  + GN LV  A+   ++++TVTN+FI +L+  D+++ L  VPF
Sbjct: 49  SLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPF 97

>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 66  SVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPF 114
           S+I +  + GN LV  A+   ++++TVTN+FI +L+  D+++ L  VPF
Sbjct: 42  SLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPF 90

>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 66  SVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPF 114
           S+I +  + GN LV  A+   ++++TVTN+FI +L+  D+++ L  VPF
Sbjct: 17  SLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPF 65

>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 60  SVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILT 108
           ++ + YS +  + LLGN LV + ++   K+KT TN +I NL+  D + T
Sbjct: 16  AITALYSAVCAVGLLGNVLVMFGIVRYTKLKTATNIYIFNLALADALAT 64

>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 34/50 (68%)
Query: 66  SVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
           +++ ++ + GN LV  A+  +Q+++T+TN FI +L+  D+++ L  VPF 
Sbjct: 19  ALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFG 68

>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 34/50 (68%)
Query: 66  SVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
           +++ ++ + GN LV  A+  +Q+++T+TN FI +L+  D+++ L  VPF 
Sbjct: 19  ALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFG 68

>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 66  SVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
           S+I +  + GN LV  A+   ++++TVTN+FI +L+  D+++ L  VPF 
Sbjct: 41  SLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFG 90

>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 66  SVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
           S+I +  + GN LV  A+   ++++TVTN+FI +L+  D+++ L  VPF 
Sbjct: 18  SLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFG 67

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	119
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	2e-18
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	2e-16
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	2e-13
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	2e-13
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	2e-13
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	3e-13
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	2e-12
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	5e-12
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	1e-11
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	1e-11
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	1e-11
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	2e-11
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	3e-10
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	6e-10
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	9e-09

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score = 78.2 bits (193), Expect = 2e-18
 Identities = 22/88 (25%), Positives = 41/88 (46%)

Query: 28  SETSKNYSLLPYPPIYNCDELDGVMAVPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQ 87
                  S L      N  E +  +          + Y+VI V S++GN +V + +L  +
Sbjct: 2   DNVLPVDSDLSPNISTNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHK 61

Query: 88  KMKTVTNFFIINLSTNDIILTLFCVPFS 115
           +M+TVTN+F++NL+  +  +  F    +
Sbjct: 62  RMRTVTNYFLVNLAFAEASMAAFNTVVN 89

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score = 64.3 bits (156), Expect = 2e-13
 Identities = 20/55 (36%), Positives = 38/55 (69%)

Query: 61  VISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
            I+    I V+++LGN LVC+AV ++  ++ VTN+F+++L+  DI + +  +PF+
Sbjct: 34  YITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFA 88

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 63.9 bits (156), Expect = 2e-13
 Identities = 10/61 (16%), Positives = 28/61 (45%)

Query: 55  PLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPF 114
           P     + ++  ++ ++    N L  Y  +  +K++T  N+ ++NL+  D+ +       
Sbjct: 35  PWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTT 94

Query: 115 S 115
           +
Sbjct: 95  T 95

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 64.0 bits (155), Expect = 2e-13
 Identities = 20/55 (36%), Positives = 38/55 (69%)

Query: 61  VISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
            I+    I V+++LGN LVC+AV ++  ++ VTN+F+++L+  DI + +  +PF+
Sbjct: 24  YITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFA 78

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score = 63.5 bits (154), Expect = 3e-13
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 55  PLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPF 114
            +   ++++ YS++ V+ L GN LV Y ++   KMKT TN +I NL+  D +     +PF
Sbjct: 14  MVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALA-TSTLPF 72

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score = 61.5 bits (149), Expect = 2e-12
 Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 1/102 (0%)

Query: 14  EQLNVNLTLFIEHFSETSKNYSLLPYPPIYNCDELDGVMAVPLFRYSVISFYSVIFVMSL 73
                 + L    +   + N +             D   A  ++   +    S+I +  +
Sbjct: 139 RWDEAAVNLAKSRWYNQTPNRAKRVITTFRTG-TWDAYAADEVWVVGMGIVMSLIVLAIV 197

Query: 74  LGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
            GN LV  A+   ++++TVTN+FI +L+  D+++ L  VPF 
Sbjct: 198 FGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFG 239

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 60.1 bits (145), Expect = 5e-12
 Identities = 13/55 (23%), Positives = 35/55 (63%)

Query: 61  VISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
           ++     + +++++GN LV  ++ V++ ++TV N+F+ +L+  D+I+ +F +   
Sbjct: 26  IVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLY 80

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 59.0 bits (142), Expect = 1e-11
 Identities = 19/61 (31%), Positives = 36/61 (59%)

Query: 55  PLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPF 114
            ++   +    S+I +  + GN LV  A+   ++++TVTN+FI +L+  D+++ L  VPF
Sbjct: 37  EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPF 96

Query: 115 S 115
            
Sbjct: 97  G 97

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 58.9 bits (142), Expect = 1e-11
 Identities = 18/55 (32%), Positives = 33/55 (60%)

Query: 61  VISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
           ++   S I ++++  N LV YAV   +K+ TV N +I++LS  D+I+    +P +
Sbjct: 11  LVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMN 65

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score = 58.8 bits (142), Expect = 1e-11
 Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 2/89 (2%)

Query: 27  FSETSKNYSLLPYPPIYNCDELDGVMAVPLFRYSVIS-FYSVIFVMSLLGNGLVCYAVLV 85
              +      +      +  E         F    +   YS+IF+  ++GNGLV   +  
Sbjct: 16  IYTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGY 75

Query: 86  SQKMKTVTNFFIINLSTNDIILTLFCVPF 114
            +K++++T+ + ++LS  D++  +  +PF
Sbjct: 76  QKKLRSMTDKYRLHLSVADLLF-VITLPF 103

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score = 58.6 bits (141), Expect = 2e-11
 Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 1/94 (1%)

Query: 23  FIEHFSETSKNYSLLPYPPIYNCDELDGVMAVPLFRYSVIS-FYSVIFVMSLLGNGLVCY 81
           + +       + S L     Y C   +   A     ++  +  Y  + +  + GNGLVC 
Sbjct: 2   YKDDDDGAPASLSQLSSHLNYTCGAENSTGASQARPHAYYALSYCALILAIVFGNGLVCM 61

Query: 82  AVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
           AVL  + ++T TN+ +++L+  D+++    +P+ 
Sbjct: 62  AVLKERALQTTTNYLVVSLAVADLLVATLVMPWV 95

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score = 54.7 bits (132), Expect = 3e-10
 Identities = 17/68 (25%), Positives = 38/68 (55%)

Query: 48  LDGVMAVPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIIL 107
           +   +    +   +    +++ ++ + GN LV  A+  +Q+++T+TN FI +L+  D+++
Sbjct: 1   MGAELLSQQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVV 60

Query: 108 TLFCVPFS 115
            L  VPF 
Sbjct: 61  GLLVVPFG 68

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 54.2 bits (130), Expect = 6e-10
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 64  FYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLF-CVPFS 115
           F  +  ++   GNG+V Y    ++ ++T  N FIINL+ +D   +L    P  
Sbjct: 40  FIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLM 92

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score = 51.0 bits (121), Expect = 9e-09
 Identities = 10/55 (18%), Positives = 22/55 (40%)

Query: 61  VISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFS 115
               + +I    +L N  V   +  ++K      +FI NL+ +D++  +      
Sbjct: 66  TSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANL 120

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	119
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.49
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.39
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.38
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.37
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.29
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.29
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.28
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.25
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.2
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.2
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.2
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.2
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.18
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.18
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.13
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.13
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.1
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.03
2lot_A	64	Apelin receptor; membrane protein; NMR {Homo sapie	97.57

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.49  E-value=4.4e-14  Score=108.31  Aligned_cols=65  Identities=15%  Similarity=0.377  Sum_probs=54.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHHHHHHHhhhhcccccc
Q psy14840         54 VPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKM---KTVTNFFIINLSTNDIILTLFCVPFSRLL  118 (119)
Q Consensus        54 ~~~~~~~~~~~~~~i~~~~~~gN~lvi~v~~~~~~l---~~~~~~fl~nLa~~Dll~~~~~~P~~~~~  118 (119)
                      +...+.++.++|.+++++|++||+++++++.++|++   |+++|+|++|||++|++++++++|+.+++
T Consensus        28 ~~~~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~   95 (510)
T 4grv_A           28 DIYSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYN   95 (510)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334577888999999999999999999999887754   48899999999999999999999987653

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.39  E-value=9.6e-13  Score=93.68  Aligned_cols=59  Identities=36%  Similarity=0.681  Sum_probs=53.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhcccc
Q psy14840         57 FRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSR  116 (119)
Q Consensus        57 ~~~~~~~~~~~i~~~~~~gN~lvi~v~~~~~~l~~~~~~fl~nLa~~Dll~~~~~~P~~~  116 (119)
                      .+.+..++|.+++++|++||+++++++.++|++|+++|+|+.|||++|+++++ .+|..+
T Consensus        10 ~~~i~~i~y~ii~i~gv~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~l-~~p~~~   68 (296)
T 2lnl_A           10 NKYVVIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFAL-TLPIWA   68 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHH-hhhHHH
Confidence            36788889999999999999999999999999999999999999999999987 567654

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.38  E-value=8.1e-13  Score=99.73  Aligned_cols=62  Identities=26%  Similarity=0.566  Sum_probs=55.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhccccc
Q psy14840         55 PLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSRL  117 (119)
Q Consensus        55 ~~~~~~~~~~~~~i~~~~~~gN~lvi~v~~~~~~l~~~~~~fl~nLa~~Dll~~~~~~P~~~~  117 (119)
                      ...+.++.+++.+++++|++||+++++++.+++++|+++|+|++|||++|+++++ ++|+.+.
T Consensus        45 ~~~~~~~~~~~~~i~~~g~~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~~~-~~p~~~~  106 (502)
T 3odu_A           45 NFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVI-TLPFWAV  106 (502)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHHT-THHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            3447888899999999999999999999999999999999999999999999964 8887654

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.37  E-value=5.1e-12  Score=91.90  Aligned_cols=60  Identities=30%  Similarity=0.484  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhccccc
Q psy14840         58 RYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSRL  117 (119)
Q Consensus        58 ~~~~~~~~~~i~~~~~~gN~lvi~v~~~~~~l~~~~~~fl~nLa~~Dll~~~~~~P~~~~  117 (119)
                      ..+..+++.+++++|++||+++++++.++|++|+++|+|++|||++|++.++..+|..+.
T Consensus        32 ~~~~~~~~~~i~~~gi~gN~lvi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~p~~~~   91 (364)
T 2ks9_A           32 IVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFT   91 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345578899999999999999999999999999999999999999999998878887543

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.29  E-value=8.1e-12  Score=95.87  Aligned_cols=59  Identities=19%  Similarity=0.228  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhccccc
Q psy14840         59 YSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSRL  117 (119)
Q Consensus        59 ~~~~~~~~~i~~~~~~gN~lvi~v~~~~~~l~~~~~~fl~nLa~~Dll~~~~~~P~~~~  117 (119)
                      .++.+++.+++++|++||+++++++.+++++|+++|+|++|||++|++++++.+|..+.
T Consensus        64 ~~~~~~~~~i~~~g~~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~  122 (520)
T 3v2y_A           64 KLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLL  122 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77889999999999999999999999999999999999999999999999988887553

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.29  E-value=2.4e-11  Score=87.55  Aligned_cols=62  Identities=16%  Similarity=0.291  Sum_probs=55.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhcccc
Q psy14840         55 PLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSR  116 (119)
Q Consensus        55 ~~~~~~~~~~~~~i~~~~~~gN~lvi~v~~~~~~l~~~~~~fl~nLa~~Dll~~~~~~P~~~  116 (119)
                      +....+..+++.+++++|++||+++++++.+++++|+++|++++|||++|++.++..+|..+
T Consensus        35 ~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~   96 (349)
T 1u19_A           35 PWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTL   96 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHheEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHHH
Confidence            34456778889999999999999999999999999999999999999999999998888654

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.28  E-value=5.9e-12  Score=96.01  Aligned_cols=63  Identities=30%  Similarity=0.488  Sum_probs=56.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhccccc
Q psy14840         55 PLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSRL  117 (119)
Q Consensus        55 ~~~~~~~~~~~~~i~~~~~~gN~lvi~v~~~~~~l~~~~~~fl~nLa~~Dll~~~~~~P~~~~  117 (119)
                      .....++.+++.+++++|++||+++++++.+++++|+++|+|++|||++|++++++.+|+.+.
T Consensus        37 ~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~   99 (500)
T 2rh1_A           37 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAA   99 (500)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344677788999999999999999999999999999999999999999999999988997654

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.25  E-value=8.1e-12  Score=93.67  Aligned_cols=61  Identities=33%  Similarity=0.663  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhcccccc
Q psy14840         58 RYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSRLL  118 (119)
Q Consensus        58 ~~~~~~~~~~i~~~~~~gN~lvi~v~~~~~~l~~~~~~fl~nLa~~Dll~~~~~~P~~~~~  118 (119)
                      ..+..+++.+++++|++||+++++++.+++++|+++|+|++|||++|++++++.+|+.+.+
T Consensus        21 ~~~~~~~~~~i~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~   81 (488)
T 3eml_A           21 SSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITI   81 (488)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678888999999999999999999999999999999999999999999998899986643

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.20  E-value=1.2e-11  Score=92.94  Aligned_cols=63  Identities=24%  Similarity=0.394  Sum_probs=55.4

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhcccc
Q psy14840         53 AVPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSR  116 (119)
Q Consensus        53 ~~~~~~~~~~~~~~~i~~~~~~gN~lvi~v~~~~~~l~~~~~~fl~nLa~~Dll~~~~~~P~~~  116 (119)
                      ..+....++.+++.+++++|++||+++++++.+++++|+++|+|++|||++|+++++ ++|..+
T Consensus        15 ~~~~~~~~~~~~~~~i~~~~i~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~-~~~~~~   77 (484)
T 3vw7_A           15 TSSWLTLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVS-VLPFKI   77 (484)
T ss_dssp             TCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            345567788999999999999999999999999999999999999999999999977 466543

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.20  E-value=2.9e-11  Score=89.84  Aligned_cols=62  Identities=32%  Similarity=0.624  Sum_probs=56.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhccccc
Q psy14840         56 LFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSRL  117 (119)
Q Consensus        56 ~~~~~~~~~~~~i~~~~~~gN~lvi~v~~~~~~l~~~~~~fl~nLa~~Dll~~~~~~P~~~~  117 (119)
                      ....+..+++.+++++|++||+++++++.+++++|+++|+|++|||++|+++++..+|+.+.
T Consensus        29 ~~~~~~~~i~~~i~~~gi~gN~~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~   90 (447)
T 4eiy_A           29 MGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT   90 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677888999999999999999999999999999999999999999999998889997654

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.20  E-value=1.9e-11  Score=91.35  Aligned_cols=60  Identities=23%  Similarity=0.490  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhccccc
Q psy14840         58 RYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSRL  117 (119)
Q Consensus        58 ~~~~~~~~~~i~~~~~~gN~lvi~v~~~~~~l~~~~~~fl~nLa~~Dll~~~~~~P~~~~  117 (119)
                      ..+..+++.+++++|++||+++++++.+++++|+++|+|++|||++|++.+++.+|+.+.
T Consensus        23 ~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~   82 (467)
T 3uon_A           23 VVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTL   82 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677888999999999999999999999999999999999999999999999888887654

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.18  E-value=1.5e-11  Score=92.30  Aligned_cols=60  Identities=27%  Similarity=0.584  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhccccc
Q psy14840         58 RYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSRL  117 (119)
Q Consensus        58 ~~~~~~~~~~i~~~~~~gN~lvi~v~~~~~~l~~~~~~fl~nLa~~Dll~~~~~~P~~~~  117 (119)
                      +.+..+++.+++++|++||+++++++.+++++|+++|+|++|||++|++++++.+|+.+.
T Consensus        38 ~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~   97 (481)
T 3pbl_A           38 HAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVY   97 (481)
T ss_dssp             ---CCSHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556677889999999999999999999999999999999999999999998889997653

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.18  E-value=4.4e-11  Score=89.16  Aligned_cols=61  Identities=36%  Similarity=0.633  Sum_probs=55.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhccccc
Q psy14840         56 LFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSRL  117 (119)
Q Consensus        56 ~~~~~~~~~~~~i~~~~~~gN~lvi~v~~~~~~l~~~~~~fl~nLa~~Dll~~~~~~P~~~~  117 (119)
                      ....++.+++.+++++|++||+++++++.+++++|+++|+|++|||++|++.+++ +|+.+.
T Consensus        15 ~~~~~~~~~~~~~~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~-~p~~~~   75 (464)
T 4dkl_A           15 VTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST-LPFQSV   75 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            3467888999999999999999999999999999999999999999999999885 887654

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.13  E-value=2.4e-11  Score=90.40  Aligned_cols=60  Identities=32%  Similarity=0.464  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhccccc
Q psy14840         58 RYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSRL  117 (119)
Q Consensus        58 ~~~~~~~~~~i~~~~~~gN~lvi~v~~~~~~l~~~~~~fl~nLa~~Dll~~~~~~P~~~~  117 (119)
                      ..++.+++.+++++|++||+++++++.+++++|+++|+|++|||++|++.+++.+|+.+.
T Consensus         8 ~~~~~~~~~~~~~~gi~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~   67 (452)
T 3rze_A            8 LMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNIL   67 (452)
T ss_dssp             -CGGGTHHHHHHHHHHHHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455677889999999999999999999999999999999999999999998889998764

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.13  E-value=5.5e-11  Score=84.24  Aligned_cols=62  Identities=27%  Similarity=0.507  Sum_probs=55.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhccccc
Q psy14840         56 LFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSRL  117 (119)
Q Consensus        56 ~~~~~~~~~~~~i~~~~~~gN~lvi~v~~~~~~l~~~~~~fl~nLa~~Dll~~~~~~P~~~~  117 (119)
                      ..+....+++.+++++|++||+++++++.+++++|+++|+++.|||++|++.++..+|..+.
T Consensus         9 ~~~~~~~~~~~~~~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~   70 (315)
T 4amj_A            9 QWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGAT   70 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            34677888999999999999999999999999999999999999999999998878887543

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.10  E-value=9.9e-11  Score=89.43  Aligned_cols=63  Identities=30%  Similarity=0.488  Sum_probs=56.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhccccc
Q psy14840         55 PLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSRL  117 (119)
Q Consensus        55 ~~~~~~~~~~~~~i~~~~~~gN~lvi~v~~~~~~l~~~~~~fl~nLa~~Dll~~~~~~P~~~~  117 (119)
                      +.......+++.+++++|++||+++++++.+++++|+++|+|++|||++|++++++.+|+.+.
T Consensus       179 ~~~~~~~~i~~~ii~~~gi~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~~  241 (514)
T 3sn6_R          179 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAA  241 (514)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence            334677888999999999999999999999999999999999999999999999888887654

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.03  E-value=6.5e-10  Score=83.20  Aligned_cols=61  Identities=30%  Similarity=0.501  Sum_probs=53.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhh-hhccccc
Q psy14840         57 FRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLF-CVPFSRL  117 (119)
Q Consensus        57 ~~~~~~~~~~~i~~~~~~gN~lvi~v~~~~~~l~~~~~~fl~nLa~~Dll~~~~-~~P~~~~  117 (119)
                      ....+.+++.+++++|++||+++++++.+++++|++.|++++|||++|++++++ ++|+.+.
T Consensus        33 ~~~~~~i~~~ii~i~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~~~p~~~~   94 (448)
T 2z73_A           33 VYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTI   94 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHHhccHHHH
Confidence            356677888999999999999999999999999999999999999999999876 3776543

>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A

Probab=97.57  E-value=7.8e-06  Score=46.30  Aligned_cols=30  Identities=27%  Similarity=0.572  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy14840         60 SVISFYSVIFVMSLLGNGLVCYAVLVSQKM   89 (119)
Q Consensus        60 ~~~~~~~~i~~~~~~gN~lvi~v~~~~~~l   89 (119)
                      ++.++|.++|++|++||++++|++.++|.-
T Consensus        30 ~lp~~Y~lvFvlGl~GN~lvl~v~~~~~~~   59 (64)
T 2lot_A           30 LIPAIYMLVFLLGTTGNGLVLWTVFRKKGH   59 (64)
T ss_dssp             SSHHHHHHTTTTTTTSSSSHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHhhhhhheeeeeEeccc
Confidence            678899999999999999999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	119
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	3e-10

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.8 bits (128), Expect = 3e-10
 Identities = 10/63 (15%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 54  VPLFRYSVIS-FYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCV 112
              +++S+++ +  ++ ++    N L  Y  +  +K++T  N+ ++NL+  D+ +     
Sbjct: 32  AEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGF 91

Query: 113 PFS 115
             +
Sbjct: 92  TTT 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	119
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.33

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.33  E-value=4.3e-12  Score=89.95  Aligned_cols=64  Identities=16%  Similarity=0.272  Sum_probs=56.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhccccc
Q psy14840         54 VPLFRYSVISFYSVIFVMSLLGNGLVCYAVLVSQKMKTVTNFFIINLSTNDIILTLFCVPFSRL  117 (119)
Q Consensus        54 ~~~~~~~~~~~~~~i~~~~~~gN~lvi~v~~~~~~l~~~~~~fl~nLa~~Dll~~~~~~P~~~~  117 (119)
                      +++...++.+++.+++++|++||+++++++.++|++|++.|+++.|||++|++.++...|..+.
T Consensus        33 ~~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~   96 (348)
T d1u19a_          33 EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLY   96 (348)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3445667888899999999999999999999999999999999999999999999888876543