Psyllid ID: psy14846

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-----
MLKDKGTQTFEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDALKEDIMNFIRHAQQRVLAHEEDQALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLDSWNQSIFNDIKQRLQDSAMKLVQSERNGEAFDSQLVIGVRESYVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAKLHEEELRACKYLESSSSVQLLTDCCVTVLVSSFKNTILAECPKMIKMNETLKLELMMKLLDRIKDGITPMLQDLEAHIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDTTVFKLELPTKQCTGIKTLPESKCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLTRRLILDTSADSEKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKGSIGDSINIKILNAGAWARGSERVTVSLPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNGTITFSNEVGKYDLDVTTFQMAVLFAWNERPLDRFQNL
cccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHcccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHccccccEEEEccccccEEEEEEEcccEEEEEEcHHHHHHHHHHccccccccccc
cccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcHHHHHHHHHHHHHcccccccccHEHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHcccccccccEEcccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEcccccEEEEEEHHHHHHHHHHcccccEcHccc
mlkdkgtqtfedkwpsmrPIVLKLLqqepvsqnewQNLFYAVHVVCLwdekgpskIVDALKEDIMNFIRHAQQRVLAHEEDQALLKAYIQEWSKFLAQcsylptpfrqleTSLVNKSVSTSltnnnnkqkisaEESTVRVLMLDSWNQSIFNDIKQRLQDSAMKLVQSerngeafdsQLVIGVRESYVnlcsnpedkLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAKLHEEELRACKylessssvqLLTDCCVTVLVSSFKNTILAECPKMIKMNETLKLELMMKLLDRIKDGITPMLQDLEAHIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKDafkddprflTARDKAYKNVVNDTTvfklelptkqctgiktlpeskcpeLLANYCDMLlrktplskrltaDEIESKLRNVLLVLKYVQNKDVFMRFHKAHLTRRLIldtsadsekEENMVEWLRDVGMPADYVNKLARMFQDIKVSQDLNYQFkqsyrgskgsigdsiniKILNagawargservtvslpleledyipEVEDFYkkkhsgrklqwyhhmsngtitfsnevgkydldVTTFQMAVLFAwnerpldrfqnl
mlkdkgtqtfedkwpsmrPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDALKEDIMNFIRHAQQRVLAHEEDQALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSvstsltnnnnkqkisaeESTVRVLMLDSWNQSIFNDIKQRLQDSAMKLVQSERNGEAFDSQLVIGVRESYVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAKLHEEELRACKYLESSSSVQLLTDCCVTVLVSSFKNTILAECPKMIKMNETLKLELMMKLLDRIKDGITPMLQDLEAHIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFltardkayknvvndttvfklelptkqctgiktlpeskcPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRfhkahltrrlildtsadsekEENMVEWLRDVGMPADYVNKLARMFQDIKVSQDLNYQFKQSyrgskgsigdsINIKILNagawargserVTVSLPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNGTITFSNEVGKYDLDVTTFQMAVLFAWNERPLDRFQNL
MLKDKGTQTFEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDALKEDIMNFIRHAQQRVLAHEEDQALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLDSWNQSIFNDIKQRLQDSAMKLVQSERNGEAFDSQLVIGVRESYVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAKLHEEELRACKYLESSSSVQLLTDCCVTVLVSSFKNTILAECPKMIkmnetlklelmmkllDRIKDGITPMLQDLEAHIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDTTVFKLELPTKQCTGIKTLPESKCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLTRRLILDTSADSEKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKGSIGDSINIKILNAGAWARGSERVTVSLPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNGTITFSNEVGKYDLDVTTFQMAVLFAWNERPLDRFQNL
****************MRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDALKEDIMNFIRHAQQRVLAHEEDQALLKAYIQEWSKFLAQCSYLPTPFRQLETSLV**********************TVRVLMLDSWNQSIFNDIKQRL***************AFDSQLVIGVRESYVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAKLH*****************LLTDCCVTVLVSSFKNTILAECPKMIKMNETLKLELMMKLLDRIKDGITPMLQDLEAHIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDTTVFKLELPTKQCTGIKTLPESKCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLTRRLILDT********NMVEWLRDVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKGSIGDSINIKILNAGAWARGSERVTVSLPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNGTITFSNEVGKYDLDVTTFQMAVLFAWNER********
*****GT**FEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDALKEDIMNFIRHAQQR****EEDQALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSV***********KISAEESTVRVLMLDSWNQSIFNDIKQRLQDSAMKLVQSERNGEAFDSQLVIGVRESYVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAKLHEEELRACKYLESSSSVQLLTDCCVTVLVSSFKNTILAECPKMIKMNETLKLELMMKLLDRIKDGITPMLQDLEAHIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDTTVFKLELPTK*********ESKCPELLANYCDMLL**************ESKLRNVLLVLKYVQNKDVFMRFHKAHLTRRLIL*****SEKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQDLNYQFK*********IGDSINIKILNAGAWARGSERVTVSLPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNGTITFSNEVGKYDLDVTTFQMAVLFAWNERPLDRFQNL
********TFEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDALKEDIMNFIRHAQQRVLAHEEDQALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLDSWNQSIFNDIKQRLQDSAMKLVQSERNGEAFDSQLVIGVRESYVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAKLHEEELRACKYLESSSSVQLLTDCCVTVLVSSFKNTILAECPKMIKMNETLKLELMMKLLDRIKDGITPMLQDLEAHIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDTTVFKLELPTKQCTGIKTLPESKCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLTRRLILDTSADSEKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKGSIGDSINIKILNAGAWARGSERVTVSLPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNGTITFSNEVGKYDLDVTTFQMAVLFAWNERPLDRFQNL
*****GTQTFEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDALKEDIMNFIRHAQQRVLAHEEDQALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLDSWNQSIFNDIKQRLQDSAMKLVQSERNGEAFDSQLVIGVRESYVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAKLHEEELRACKYLESSSSVQLLTDCCVTVLVSSFKNTILAECPKMIKMNETLKLELMMKLLDRIKDGITPMLQDLEAHIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDTTVFKLELPTK*CTGIKT**ESKCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLTRRLILDTSADSEKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKGSIGDSINIKILNAGAWARGSERVTVSLPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNGTITFSNEVGKYDLDVTTFQMAVLFAWNERPLDRF**L
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLKDKGTQTFEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDALKEDIMNFIRHAQQRVLAHEEDQALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLDSWNQSIFNDIKQRLQDSAMKLVQSERNGEAFDSQLVIGVRESYVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAKLHEEELRACKYLESSSSVQLLTDCCVTVLVSSFKNTILAECPKMIKMNETLKLELMMKLLDRIKDGITPMLQDLEAHIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDTTVFKLELPTKQCTGIKTLPESKCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLTRRLILDTSADSEKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKGSIGDSINIKILNAGAWARGSERVTVSLPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNGTITFSNEVGKYDLDVTTFQMAVLFAWNERPLDRFQNL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query615 2.2.26 [Sep-21-2011]
Q29425 780 Cullin-5 OS=Oryctolagus c yes N/A 0.986 0.778 0.700 0.0
Q93034 780 Cullin-5 OS=Homo sapiens yes N/A 0.986 0.778 0.700 0.0
Q9JJ31 780 Cullin-5 OS=Rattus norveg yes N/A 0.986 0.778 0.700 0.0
Q5RB36 780 Cullin-5 OS=Pongo abelii yes N/A 0.986 0.778 0.699 0.0
Q9D5V5 780 Cullin-5 OS=Mus musculus yes N/A 0.986 0.778 0.699 0.0
Q23639 765 Cullin-5 OS=Caenorhabditi yes N/A 0.957 0.769 0.474 1e-160
Q5R4G6 776 Cullin-1 OS=Pongo abelii no N/A 0.798 0.632 0.340 6e-77
Q13616 776 Cullin-1 OS=Homo sapiens no N/A 0.798 0.632 0.340 6e-77
Q9WTX6 776 Cullin-1 OS=Mus musculus no N/A 0.798 0.632 0.340 6e-77
O60999 770 Cullin-1 OS=Dictyostelium yes N/A 0.926 0.740 0.292 1e-71
>sp|Q29425|CUL5_RABIT Cullin-5 OS=Oryctolagus cuniculus GN=CUL5 PE=2 SV=3 Back     alignment and function desciption
 Score =  897 bits (2319), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/622 (70%), Positives = 516/622 (82%), Gaps = 15/622 (2%)

Query: 1   MLKDKGTQTFEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDAL 60
           +LK+KG+  FEDKW  MRPIVLKLL+QE V++ +W +LF  VH VCLWD+KGP+KI  AL
Sbjct: 6   LLKNKGSLQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAKIHQAL 65

Query: 61  KEDIMNFIRHAQQRVLAHEEDQALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVST 120
           KEDI+ FI+ AQ RVL+H++D ALLKAYI EW KF  QC  LP PF QLE +L+ K  S 
Sbjct: 66  KEDILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSN 125

Query: 121 SLTNNNNKQKISAEESTVRVLMLDSWNQSIFNDIKQRLQDSAMKLVQSERNGEAFDSQLV 180
             +N         E+S VR LMLD+WN+SIF++IK RLQDSAMKLV +ER GEAFDSQLV
Sbjct: 126 KKSN--------VEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLV 177

Query: 181 IGVRESYVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAK 240
           IGVRESYVNLCSNPEDKLQIYR++FEKAY+ +TE FY  +A  +LQ NGV++YMKYADAK
Sbjct: 178 IGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAK 237

Query: 241 LHEEELRACKYLES---SSSVQLLTDCCVTVLVSSFKNTILAECPKMIKMNETLKLELMM 297
           L EEE RA +YLE+    +SV+ L +CCV  LV+SFK TILAEC  MIK NET KL LM 
Sbjct: 238 LKEEEKRALRYLETRRECNSVEALMECCVNALVTSFKETILAECQGMIKRNETEKLHLMF 297

Query: 298 KLLDRIKDGITPMLQDLEAHIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKD 357
            L+D++ +GI PML+DLE HI++AGLADM+A+A+ IT DSEKYVE+LL LFN+FSKLVK+
Sbjct: 298 SLMDKVPNGIEPMLKDLEEHIISAGLADMVAAAETITTDSEKYVEQLLTLFNRFSKLVKE 357

Query: 358 AFKDDPRFLTARDKAYKNVVNDTTVFKLELPTKQ-CTGIKTLPESKCPELLANYCDMLLR 416
           AF+DDPRFLTARDKAYK VVND T+FKLELP KQ   G+KT PESKCPELLANYCDMLLR
Sbjct: 358 AFQDDPRFLTARDKAYKAVVNDATIFKLELPLKQKGVGLKTQPESKCPELLANYCDMLLR 417

Query: 417 KTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLTRRLILDTSADSEKEENMV 476
           KTPLSK+LT++EIE+KL+ VLLVLKYVQNKDVFMR+HKAHLTRRLILD SADSE EENMV
Sbjct: 418 KTPLSKKLTSEEIEAKLKEVLLVLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMV 477

Query: 477 EWLRDVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKGSI-GDSINIKILNAGAWA 535
           EWLR+VGMPADYVNKLARMFQDIKVS+DLN  FK+ ++ +K ++  DS+NIKILNAGAW+
Sbjct: 478 EWLREVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWS 537

Query: 536 RGSERVTVSLPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNGTITFSNEVGKYDLDVTT 595
           R SE+V VSLP ELED IPEVE+FYKK HSGRKL W+H MSNG ITF NEVG+YDL+VTT
Sbjct: 538 RSSEKVFVSLPTELEDLIPEVEEFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTT 597

Query: 596 FQMAVLFAWNERPLDR--FQNL 615
           FQ+AVLFAWN+RP ++  F+NL
Sbjct: 598 FQLAVLFAWNQRPREKISFENL 619
Core component of multiple SCF-like ECS (Elongin BC-Cullin 2/5-SOCS-box protein) E3 ubiquitin-protein ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. As a scaffold protein may contribute to catalysis through positioning of the substrate and the ubiquitin-conjugating enzyme. The functional specificity of the E3 ubiquitin-protein ligase complex depends on the variable substrate recognition component. ECS(SOCS1) seems to direct ubiquitination of JAk2. Seems to be involved poteosomal degradation of p53/TP53 stimulated by adenovirus E1B-55 kDa protein. May form a cell surface vasopressin receptor.
Oryctolagus cuniculus (taxid: 9986)
>sp|Q93034|CUL5_HUMAN Cullin-5 OS=Homo sapiens GN=CUL5 PE=1 SV=4 Back     alignment and function description
>sp|Q9JJ31|CUL5_RAT Cullin-5 OS=Rattus norvegicus GN=Cul5 PE=1 SV=3 Back     alignment and function description
>sp|Q5RB36|CUL5_PONAB Cullin-5 OS=Pongo abelii GN=CUL5 PE=2 SV=3 Back     alignment and function description
>sp|Q9D5V5|CUL5_MOUSE Cullin-5 OS=Mus musculus GN=Cul5 PE=1 SV=3 Back     alignment and function description
>sp|Q23639|CUL5_CAEEL Cullin-5 OS=Caenorhabditis elegans GN=cul-5 PE=1 SV=2 Back     alignment and function description
>sp|Q5R4G6|CUL1_PONAB Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1 Back     alignment and function description
>sp|Q13616|CUL1_HUMAN Cullin-1 OS=Homo sapiens GN=CUL1 PE=1 SV=2 Back     alignment and function description
>sp|Q9WTX6|CUL1_MOUSE Cullin-1 OS=Mus musculus GN=Cul1 PE=1 SV=1 Back     alignment and function description
>sp|O60999|CUL1_DICDI Cullin-1 OS=Dictyostelium discoideum GN=culA PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query615
242006472 774 Cullin-5, putative [Pediculus humanus co 0.988 0.785 0.782 0.0
193641102 776 PREDICTED: cullin-5-like [Acyrthosiphon 0.985 0.780 0.775 0.0
383852072 785 PREDICTED: cullin-5 [Megachile rotundata 0.983 0.770 0.743 0.0
110751345 789 PREDICTED: cullin-5 [Apis mellifera] gi| 0.978 0.762 0.745 0.0
307195537 786 Cullin-5 [Harpegnathos saltator] 0.982 0.768 0.743 0.0
350423515 789 PREDICTED: cullin-5-like [Bombus impatie 0.978 0.762 0.745 0.0
340710266 789 PREDICTED: LOW QUALITY PROTEIN: cullin-5 0.978 0.762 0.740 0.0
332026213 785 Cullin-5 [Acromyrmex echinatior] 0.983 0.770 0.724 0.0
291235010 782 PREDICTED: cullin 5-like [Saccoglossus k 0.990 0.778 0.734 0.0
321463511 782 hypothetical protein DAPPUDRAFT_307204 [ 0.986 0.776 0.719 0.0
>gi|242006472|ref|XP_002424074.1| Cullin-5, putative [Pediculus humanus corporis] gi|212507380|gb|EEB11336.1| Cullin-5, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score = 1008 bits (2605), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/620 (78%), Positives = 548/620 (88%), Gaps = 12/620 (1%)

Query: 1   MLKDKGTQTFEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDAL 60
           ML+DK   +FEDKWP MRPI+LKLLQQEPV+Q EWQ+LFY+VH+ CLWD+KGP K+ DAL
Sbjct: 1   MLQDKAQLSFEDKWPGMRPIILKLLQQEPVTQKEWQDLFYSVHLTCLWDDKGPPKVRDAL 60

Query: 61  KEDIMNFIRHAQQRVLAHEEDQALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVST 120
           K+DIMNFI+ AQQRVLAHEEDQALLKAYI EW KF  QC+YLPTPFRQLETSL  K +  
Sbjct: 61  KDDIMNFIKQAQQRVLAHEEDQALLKAYIAEWRKFFTQCNYLPTPFRQLETSLGAKVMPV 120

Query: 121 SLTNNNNKQKISAEESTVRVLMLDSWNQSIFNDIKQRLQDSAMKLVQSERNGEAFDSQLV 180
           +       +K + EES VR LMLDSWNQSIF DIKQRLQDSAMKLV +ERNGEAFDSQLV
Sbjct: 121 A-------KKPTTEESIVRKLMLDSWNQSIFCDIKQRLQDSAMKLVHAERNGEAFDSQLV 173

Query: 181 IGVRESYVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAK 240
           IGVRESYVNLCSNP+DKLQIYRE+FE AY+ AT  FY +KA ++L+ NGV++YMKYADAK
Sbjct: 174 IGVRESYVNLCSNPDDKLQIYRENFELAYLHATLVFYKMKAPQYLEANGVQNYMKYADAK 233

Query: 241 LHEEELRACKYLESSSS---VQLLTDCCVTVLVSSFKNTILAECPKMIKMNETLKLELMM 297
           L EEE RA KYLESSSS   V+++  CCV  LVS+FK TILAEC  MIK NET KL+LM 
Sbjct: 234 LREEEQRAQKYLESSSSSSSVEVINACCVNALVSAFKATILAECAGMIKNNETEKLQLMF 293

Query: 298 KLLDRIKDGITPMLQDLEAHIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKD 357
           KL+DR++DGI PML+DLE HIV+AGLADM+ASADIITQDSEKYVERLL+LFNQFS LVK+
Sbjct: 294 KLMDRVQDGILPMLKDLEDHIVSAGLADMLASADIITQDSEKYVERLLKLFNQFSTLVKE 353

Query: 358 AFKDDPRFLTARDKAYKNVVNDTTVFKLELPTKQCTGIKTLPESKCPELLANYCDMLLRK 417
           AF DDPRFLTARDKAYK+VVNDT+VF+LELP KQ +G+K+ PESKCPELLANYCDMLLRK
Sbjct: 354 AFNDDPRFLTARDKAYKHVVNDTSVFRLELPVKQNSGVKSQPESKCPELLANYCDMLLRK 413

Query: 418 TPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLTRRLILDTSADSEKEENMVE 477
           TPLSK+LT+DEIESKL++VLLVLKY+QNKDVFMR+HKAHLTRRLILDTSADSEKEENMVE
Sbjct: 414 TPLSKKLTSDEIESKLKDVLLVLKYIQNKDVFMRYHKAHLTRRLILDTSADSEKEENMVE 473

Query: 478 WLRDVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKGSIGDSINIKILNAGAWARG 537
           WLR+VGMPADYVNKL RMFQDIKVS+DLN QFK+ YR  KG+I DSI+IKILNAGAWARG
Sbjct: 474 WLREVGMPADYVNKLGRMFQDIKVSEDLNQQFKEQYRSCKGNIADSISIKILNAGAWARG 533

Query: 538 SERVTVSLPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNGTITFSNEVGKYDLDVTTFQ 597
           SERVTVSLPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNGTITFSN VG++D+DVTTFQ
Sbjct: 534 SERVTVSLPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNGTITFSNAVGRFDVDVTTFQ 593

Query: 598 MAVLFAWNERPLDR--FQNL 615
           MAVLFAWN+R  D+  ++NL
Sbjct: 594 MAVLFAWNQRQFDKISYENL 613

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|193641102|ref|XP_001950093.1| PREDICTED: cullin-5-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|383852072|ref|XP_003701553.1| PREDICTED: cullin-5 [Megachile rotundata] Back     alignment and taxonomy information
>gi|110751345|ref|XP_623958.2| PREDICTED: cullin-5 [Apis mellifera] gi|380026379|ref|XP_003696929.1| PREDICTED: cullin-5 [Apis florea] Back     alignment and taxonomy information
>gi|307195537|gb|EFN77423.1| Cullin-5 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|350423515|ref|XP_003493505.1| PREDICTED: cullin-5-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340710266|ref|XP_003393714.1| PREDICTED: LOW QUALITY PROTEIN: cullin-5-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|332026213|gb|EGI66355.1| Cullin-5 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|291235010|ref|XP_002737439.1| PREDICTED: cullin 5-like [Saccoglossus kowalevskii] Back     alignment and taxonomy information
>gi|321463511|gb|EFX74526.1| hypothetical protein DAPPUDRAFT_307204 [Daphnia pulex] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query615
UNIPROTKB|Q93034 780 CUL5 "Cullin-5" [Homo sapiens 0.986 0.778 0.689 1e-226
UNIPROTKB|I3LFR2 780 CUL5 "Uncharacterized protein" 0.986 0.778 0.689 1e-226
ZFIN|ZDB-GENE-030131-5426 780 cul5a "cullin 5a" [Danio rerio 0.986 0.778 0.686 2.1e-226
UNIPROTKB|F1P0F9 776 CUL5 "Uncharacterized protein" 0.986 0.782 0.689 2.7e-226
RGD|621742 780 Cul5 "cullin 5" [Rattus norveg 0.986 0.778 0.689 4.4e-226
UNIPROTKB|Q9JJ31 780 Cul5 "Cullin-5" [Rattus norveg 0.986 0.778 0.689 4.4e-226
MGI|MGI:1922967 780 Cul5 "cullin 5" [Mus musculus 0.986 0.778 0.688 9.2e-226
UNIPROTKB|F1N7B5 759 CUL5 "Uncharacterized protein" 0.960 0.778 0.693 2.6e-221
UNIPROTKB|J9PAX0 759 CUL5 "Uncharacterized protein" 0.960 0.778 0.693 2.6e-221
FB|FBgn0039632 852 Cul-5 "Cullin-5" [Drosophila m 0.796 0.575 0.671 1.8e-209
UNIPROTKB|Q93034 CUL5 "Cullin-5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 2188 (775.3 bits), Expect = 1.0e-226, P = 1.0e-226
 Identities = 429/622 (68%), Positives = 508/622 (81%)

Query:     1 MLKDKGTQTFEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDAL 60
             +LK+KG+  FEDKW  MRPIVLKLL+QE V++ +W +LF  VH VCLWD+KGP+KI  AL
Sbjct:     6 LLKNKGSLQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAKIHQAL 65

Query:    61 KEDIMNFIRHAQQRVLAHEEDQALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVST 120
             KEDI+ FI+ AQ RVL+H++D ALLKAYI EW KF  QC  LP PF QLE +L+ K  S 
Sbjct:    66 KEDILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGS- 124

Query:   121 SLTNNNNKQKISAEESTVRVLMLDSWNQSIFNDIKQRLQDSAMKLVQSERNGEAFDSQLV 180
                   NK K + E+S VR LMLD+WN+SIF++IK RLQDSAMKLV +ER GEAFDSQLV
Sbjct:   125 ------NK-KSNVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLV 177

Query:   181 IGVRESYVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAK 240
             IGVRESYVNLCSNPEDKLQIYR++FEKAY+ +TE FY  +A  +LQ NGV++YMKYADAK
Sbjct:   178 IGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAK 237

Query:   241 LHEEELRACKYLESS---SSVQLLTDCCVTVLVSSFKNTILAECPKMIXXXXXXXXXXXX 297
             L EEE RA +YLE+    +SV+ L +CCV  LV+SFK TILAEC  MI            
Sbjct:   238 LKEEEKRALRYLETRRECNSVEALMECCVNALVTSFKETILAECQGMIKRNETEKLHLMF 297

Query:   298 XXXDRIKDGITPMLQDLEAHIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKD 357
                D++ +GI PML+DLE HI++AGLADM+A+A+ IT DSEKYVE+LL LFN+FSKLVK+
Sbjct:   298 SLMDKVPNGIEPMLKDLEEHIISAGLADMVAAAETITTDSEKYVEQLLTLFNRFSKLVKE 357

Query:   358 AFKDDPRFLTARDKAYKNVVNDTTVFKLELPTKQC-TGIKTLPESKCPELLANYCDMLLR 416
             AF+DDPRFLTARDKAYK VVND T+FKLELP KQ   G+KT PESKCPELLANYCDMLLR
Sbjct:   358 AFQDDPRFLTARDKAYKAVVNDATIFKLELPLKQKGVGLKTQPESKCPELLANYCDMLLR 417

Query:   417 KTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLTRRLILDTSADSEKEENMV 476
             KTPLSK+LT++EIE+KL+ VLLVLKYVQNKDVFMR+HKAHLTRRLILD SADSE EENMV
Sbjct:   418 KTPLSKKLTSEEIEAKLKEVLLVLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMV 477

Query:   477 EWLRDVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKGSI-GDSINIKILNAGAWA 535
             EWLR+VGMPADYVNKLARMFQDIKVS+DLN  FK+ ++ +K ++  DS+NIKILNAGAW+
Sbjct:   478 EWLREVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWS 537

Query:   536 RGSERVTVSLPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNGTITFSNEVGKYDLDVTT 595
             R SE+V VSLP ELED IPEVE+FYKK HSGRKL W+H MSNG ITF NEVG+YDL+VTT
Sbjct:   538 RSSEKVFVSLPTELEDLIPEVEEFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTT 597

Query:   596 FQMAVLFAWNERPLDR--FQNL 615
             FQ+AVLFAWN+RP ++  F+NL
Sbjct:   598 FQLAVLFAWNQRPREKISFENL 619
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
GO:0019048 "virus-host interaction" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
GO:0005886 "plasma membrane" evidence=IEA
GO:0006970 "response to osmotic stress" evidence=IEA
GO:0051480 "cytosolic calcium ion homeostasis" evidence=IEA
GO:0016567 "protein ubiquitination" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0031625 "ubiquitin protein ligase binding" evidence=IDA
GO:0031466 "Cul5-RING ubiquitin ligase complex" evidence=IDA
GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS
GO:0004872 "receptor activity" evidence=TAS
GO:0005262 "calcium channel activity" evidence=TAS
GO:0007050 "cell cycle arrest" evidence=TAS
GO:0008283 "cell proliferation" evidence=TAS
GO:0008285 "negative regulation of cell proliferation" evidence=TAS
GO:0097193 "intrinsic apoptotic signaling pathway" evidence=TAS
GO:0005829 "cytosol" evidence=TAS
GO:0016032 "viral reproduction" evidence=TAS
GO:0070588 "calcium ion transmembrane transport" evidence=TAS
UNIPROTKB|I3LFR2 CUL5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5426 cul5a "cullin 5a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1P0F9 CUL5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|621742 Cul5 "cullin 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9JJ31 Cul5 "Cullin-5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1922967 Cul5 "cullin 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1N7B5 CUL5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9PAX0 CUL5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0039632 Cul-5 "Cullin-5" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9D5V5CUL5_MOUSENo assigned EC number0.69930.98690.7782yesN/A
Q29425CUL5_RABITNo assigned EC number0.70090.98690.7782yesN/A
Q9JJ31CUL5_RATNo assigned EC number0.70090.98690.7782yesN/A
Q5RB36CUL5_PONABNo assigned EC number0.69930.98690.7782yesN/A
Q93034CUL5_HUMANNo assigned EC number0.70090.98690.7782yesN/A
Q23639CUL5_CAEELNo assigned EC number0.47450.95770.7699yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query615
pfam00888603 pfam00888, Cullin, Cullin family 1e-138
smart00182143 smart00182, CULLIN, Cullin 1e-52
COG5647 773 COG5647, COG5647, Cullin, a subunit of E3 ubiquiti 6e-50
>gnl|CDD|216175 pfam00888, Cullin, Cullin family Back     alignment and domain information 
 Score =  415 bits (1067), Expect = e-138
 Identities = 194/596 (32%), Positives = 311/596 (52%), Gaps = 51/596 (8%)

Query: 14  WPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDALKEDIMNFIRHAQQ 73
           W  +   + ++L  +  S  ++  L+ AV+       K   K+ + LKE +  ++    +
Sbjct: 1   WEKLLDAIDQILL-KSFSSLDYMELYTAVYN--YVPHKLGEKLYNRLKEYLEEYVAALLK 57

Query: 74  RVLAHEEDQALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISA 133
            +L ++++  LLK Y +EW+KF      L   F  L    V +                 
Sbjct: 58  SILENDDEV-LLKTYYKEWNKFSTSMKILNNIFMYLNRYYVKRKNLD------------- 103

Query: 134 EESTVRVLMLDSWNQSIFNDIKQRLQDSAMKLVQSERNGEAFDSQLVIGVRESYVNLCSN 193
               V  L LD W +S+F+ IK +L D+ ++L++ ER GE  D  L+  V + +V L   
Sbjct: 104 ---GVYELGLDIWRESLFDPIKDKLIDALLRLIEKERLGEIIDRSLIKNVLDMFVEL--- 157

Query: 194 PEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAKLHEEELRACKYLE 253
             DKL++Y+E FEK ++ AT  FY  ++++FLQ N V  YMK  + +L EEE R   YL 
Sbjct: 158 GLDKLEVYKEDFEKPFLEATSEFYKKESSKFLQENSVSEYMKKVEERLEEEEERVRLYLH 217

Query: 254 SSSSVQLLTDCCVTVLVSSFKNTILAECPKMIKMNETLKLELMMKLLDRIKDGITPMLQD 313
           SS+  + L + C  VL+      + +E  +++   +   L  M +LL R+ +G+ P+ + 
Sbjct: 218 SST-EKKLIEVCEKVLIEKHLEFLHSEFQRLLDNEKIEDLRRMYRLLSRVPNGLEPLRKY 276

Query: 314 LEAHIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAY 373
            E HI   GLA +   A  +  D + YV+ LLEL +++  LV +AF +D  FL A DKA+
Sbjct: 277 FEKHIKKEGLAAVSDLA--VETDPKDYVQTLLELHDKYDSLVNEAFNNDALFLNALDKAF 334

Query: 374 KNVVNDTTVFKLELPTKQCTGIKTLPESKCPELLANYCDMLLRKTPLSKRLTADEIESKL 433
           +  +N  +                   SK  ELLA YCD LL+K+   K L  +E+E KL
Sbjct: 335 EEFINSNS-------------------SKSAELLAKYCDSLLKKS--LKGLNEEELEEKL 373

Query: 434 RNVLLVLKYVQNKDVFMRFHKAHLTRRLILDTSADSEKEENMVEWLRDVGMPADYVNKLA 493
             ++++ KY+++KDVF +F++  L +RL+  TSA  + E+ M+E L+       + +KL 
Sbjct: 374 DKIIVLFKYIEDKDVFEKFYRKMLAKRLLNGTSASDDAEKKMIEKLKQE-CGYQFTSKLE 432

Query: 494 RMFQDIKVSQDLNYQFKQSY--RGSKGSIGDSINIKILNAGAWARGSERVTVSLPLELED 551
           RMF+DI +S++LN  FK          S G  +++ +L+ G W         SLP ELE 
Sbjct: 433 RMFKDISLSKELNNSFKNHLENNLDLLSEGIDLSVLVLSTGFWPTLPTEP-FSLPEELEK 491

Query: 552 YIPEVEDFYKKKHSGRKLQWYHHMSNGTITFSNEVGKYDLDVTTFQMAVLFAWNER 607
            + + E+FY KKHSGRKL W H +  G +        Y+L V+T+QMAVL  +N++
Sbjct: 492 ALEKFEEFYSKKHSGRKLTWLHSLGRGELKAEFNDKTYELTVSTYQMAVLLLFNDQ 547

Length = 603
>gnl|CDD|214545 smart00182, CULLIN, Cullin Back     alignment and domain information
>gnl|CDD|227934 COG5647, COG5647, Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 615
KOG2285|consensus 777 100.0
KOG2166|consensus 725 100.0
PF00888588 Cullin: Cullin family; InterPro: IPR001373 Cullins 100.0
COG5647 773 Cullin, a subunit of E3 ubiquitin ligase [Posttran 100.0
KOG2284|consensus 728 100.0
KOG2167|consensus 661 100.0
smart00182142 CULLIN Cullin. 100.0
KOG2165|consensus 765 99.88
PF08539158 HbrB: HbrB-like; InterPro: IPR013745 HbrB is invol 97.42
KOG2167|consensus661 96.24
>KOG2285|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.3e-89  Score=686.00  Aligned_cols=601  Identities=66%  Similarity=1.052  Sum_probs=557.6

Q ss_pred             CCCCCCCHHhhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHhcccchh
Q psy14846          3 KDKGTQTFEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDALKEDIMNFIRHAQQRVLAHEEDQ   82 (615)
Q Consensus         3 ~~~~~~~fe~~W~~L~~ai~~I~~~~~~~~~s~~~lY~~vy~lc~~~~~~~~~LY~~l~~~i~~~l~~~~~~l~~~~~~~   82 (615)
                      |.....-||+.|+..++.+.++++++.+++..|++||.+||..|.+.++++.++|+.++..|.+++.+...++.+..++.
T Consensus         6 ~~r~r~qFee~W~~~rpIVlkLLrQ~sVt~~~WqDLF~~Vh~vclWddkGpaKI~d~L~~dI~efi~qAq~rv~s~q~d~   85 (777)
T KOG2285|consen    6 GKRDRDQFEEEWSKARPIVLKLLRQKSVTPAAWQDLFYHVHKVCLWDDKGPAKIRDILTRDINEFIHQAQKRVRSLQTDG   85 (777)
T ss_pred             cccchhhhhhhccccchHHHHHHhhccCCHHHHHHHHhhheeeeeecCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            34455689999999999999999999999999999999999999998888999999999999999998877777666678


Q ss_pred             HHHHHHHHHHHHHHHhhccccchhhhhhhhhhcccccccccccCcccccccchhhHHHHHHHhhhhhHHHhhHHHHHHHH
Q psy14846         83 ALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLDSWNQSIFNDIKQRLQDSA  162 (615)
Q Consensus        83 ~~L~~~~~~W~~y~~~~~~l~~vf~yLdr~yv~~~~~~~l~~~~~~~~~~~~~~~i~~l~l~~f~~~v~~~i~~~l~~~l  162 (615)
                      .+|..|...|.+|..++.++..-|..|+..-..+.++        .++.+++..+|+.+.++.|.++||..|+++|..+.
T Consensus        86 aLL~~YIvEWrkFftQ~niLPlPF~qle~s~~gk~gs--------~kk~~~eds~vRklMLd~WNe~IF~nIk~rLq~sA  157 (777)
T KOG2285|consen   86 ALLIGYIVEWRKFFTQANILPLPFKQLEESQAGKRGS--------VKKTPTEDSSVRKLMLDKWNEIIFMNIKERLQVSA  157 (777)
T ss_pred             HHHHHHHHHHHHHHHhcCcCCCcHHHHHHHhhcccCC--------CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999886554422        23333355899999999999999999999999999


Q ss_pred             HHHHHHHhcCCccChHhHHHHHHHHHhhcCCCCchhhhhHHhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy14846        163 MKLVQSERNGEAFDSQLVIGVRESYVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAKLH  242 (615)
Q Consensus       163 l~~I~~~R~g~~id~~~l~~v~~~~~~L~~~~~~~l~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~v~~~l~  242 (615)
                      +.++..+|+|+.+|.+++.++.++||.|+.++++++.+|++.||..||+.|.+||+..+..+++++++-+|+++|+..++
T Consensus       158 mklVhaER~G~a~DaQlViGvRESyVnL~snaEDkL~iYR~nFE~ayl~~T~efYr~~~~~~lqenGVl~YMkYAD~KL~  237 (777)
T KOG2285|consen  158 MKLVHAERDGNAIDAQLVIGVRESYVNLNSNAEDKLLIYRQNFERAYLEQTTEFYRKICGNLLQENGVLEYMKYADKKLE  237 (777)
T ss_pred             HHHHHHHhccchhhhhhhhhhHHhHhhhccCccccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCc-ccHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCchHHHHHHHHHHHhhhCCcHHHHHHHHHHHHHH
Q psy14846        243 EEELRACKYLESS-SSVQLLTDCCVTVLVSSFKNTILAECPKMIKMNETLKLELMMKLLDRIKDGITPMLQDLEAHIVNA  321 (615)
Q Consensus       243 eE~~r~~~~L~~~-~t~~~l~~~l~~~LI~~~~~~il~~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~  321 (615)
                      ||+.|+.+||... .|..++++.+..+||..|.+.|+.+|..+|...+.+-|++||+|+.++..|++++.+.+..||...
T Consensus       238 EEe~RAkRYLE~~~~s~~~lme~~VnaLv~sf~~tIlAEC~~lI~~~etErL~lmfrLmdrv~~Giepmlkdl~~HI~sa  317 (777)
T KOG2285|consen  238 EEEQRAKRYLEMNSPSSGKLMEKAVNALVESFEDTILAECSKLIASKETERLQLMFRLMDRVRSGIEPMLKDLDTHIRSA  317 (777)
T ss_pred             HHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhh
Confidence            9999999998542 678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHhHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHccCChhHHHHHHHHHHHcccCccccccccCccccC-CCCCCCC
Q psy14846        322 GLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDTTVFKLELPTKQCT-GIKTLPE  400 (615)
Q Consensus       322 g~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~lN~~~~~~~~~~~~~~~-~~~~~~~  400 (615)
                      |...+....+.++.|+.+||+.|+.++++|..+|.+.|+.|+.|..|-+.||+.++|+..+|..++|+++.+ |-++.+.
T Consensus       318 GLaDM~~aaE~ittDsEkYVeqLL~lFnkFS~LVreaF~DDpRfLTARDkAfkaVVNDssiFK~Elp~~~kgrglkt~pE  397 (777)
T KOG2285|consen  318 GLADMRNAAENITTDSEKYVEQLLLLFNKFSSLVREAFCDDPRFLTARDKAFKAVVNDSSIFKTELPNSKKGRGLKTAPE  397 (777)
T ss_pred             hHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhHHHHHHhhcchhhhhhhccchhcCCccccCcc
Confidence            999998888889999999999999999999999999999999999999999999999999999999876532 1234567


Q ss_pred             CchhHHHHHHhHHhhccCCCCCCCChHHHHHHHHhHHHHhhcccChhHHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHH
Q psy14846        401 SKCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLTRRLILDTSADSEKEENMVEWLR  480 (615)
Q Consensus       401 ~~~~e~la~y~D~~lk~~~~~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~LakRLL~~~s~s~~~E~~~i~~Lk  480 (615)
                      .++||+||.|||.+||+.+.+|.++.+|++.+|++++-+++|+.+||+|+.|++.||++||+...|++.+.|..|+..|+
T Consensus       398 SKCpELLANYCDmLLRkTpLSKkLTSEeIdakL~~VLLVLKYV~NKDVFMRyHkaHLtRRLIL~~SADsEkEE~mVewLR  477 (777)
T KOG2285|consen  398 SKCPELLANYCDMLLRKTPLSKKLTSEEIDAKLNQVLLVLKYVENKDVFMRYHKAHLTRRLILEMSADSEKEEMMVEWLR  477 (777)
T ss_pred             cccHHHHHHHHHHHHhcCccchhccHHHHHHHHHhHhhHhHhhcccHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCChhhHHHHHHHHHHHHHhHHHHHHHHHHhhcCCC-CCCCceEEEEeecCCCCCCCCCccccCChhHHHhHHHHHHH
Q psy14846        481 DVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKG-SIGDSINIKILNAGAWARGSERVTVSLPLELEDYIPEVEDF  559 (615)
Q Consensus       481 ~~g~~~~~t~kl~~M~~D~~~S~~l~~~f~~~~~~~~~-~~~~~~~~~Vlt~~~WP~~~~~~~~~lP~~l~~~~~~f~~~  559 (615)
                      +||+|++|++||..||+|++.|++++++|+...+..+. ++...+++.||..|.|...+....+.||.+|+..+-.-+.|
T Consensus       478 EvGMPaDyVNkLaRMfQDIkvseDlN~~Fk~~~~~~~~~~~aDsiNiKiLNaGAW~R~SErv~vSLP~ELED~iPdveEf  557 (777)
T KOG2285|consen  478 EVGMPADYVNKLARMFQDIKVSEDLNSSFKKALTGTNNNSIADSINIKILNAGAWGRGSERVRVSLPRELEDFIPDVEEF  557 (777)
T ss_pred             HcCCcHHHHHHHHHHHhhccccHHHHHHHHHHHhCCCCCCcccceeeeeecccccccccceEEEeCchhHHHhCccHHHH
Confidence            99999999999999999999999999999998765432 33457899999999999887677899999999999999999


Q ss_pred             HhccCCCceEEecccCCeEEEEEEecCceEEEEecHHHHHHHHhhcCCCCCC
Q psy14846        560 YKKKHSGRKLQWYHHMSNGTITFSNEVGKYDLDVTTFQMAVLFAWNERPLDR  611 (615)
Q Consensus       560 Y~~~~~~R~L~w~~~l~~~~i~~~~~~~~~~l~vs~~Q~~iLl~Fn~~~~~~  611 (615)
                      |+.+|+||+|+|.|+++.++|++..+.|.|.+.|+++||+||.+||+..--+
T Consensus       558 ykk~hsgrkl~w~h~msNG~itf~n~~GryDLevTTFQmAVLFawNqR~hdK  609 (777)
T KOG2285|consen  558 YKKKHSGRKLQWYHHMSNGTITFVNNFGRYDLEVTTFQMAVLFAWNQRAHDK  609 (777)
T ss_pred             HhcccCccchhhhhhccCCeeEeecccccceeeeehhhHHHHHHhccccccc
Confidence            9999999999999999999999988889999999999999999999854433

>KOG2166|consensus Back     alignment and domain information
>PF00888 Cullin: Cullin family; InterPro: IPR001373 Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3) Back     alignment and domain information
>COG5647 Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2284|consensus Back     alignment and domain information
>KOG2167|consensus Back     alignment and domain information
>smart00182 CULLIN Cullin Back     alignment and domain information
>KOG2165|consensus Back     alignment and domain information
>PF08539 HbrB: HbrB-like; InterPro: IPR013745 HbrB is involved in hyphal growth and polarity [] Back     alignment and domain information
>KOG2167|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query615
2wzk_A391 Structure Of The Cul5 N-Terminal Domain At 2.05a Re 1e-139
3dpl_C 382 Structural Insights Into Nedd8 Activation Of Cullin 2e-94
3dqv_C 382 Structural Insights Into Nedd8 Activation Of Cullin 1e-89
1u6g_A 776 Crystal Structure Of The Cand1-Cul1-Roc1 Complex Le 1e-75
1ldj_A 760 Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiqu 2e-75
1ldk_B 366 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 1e-36
2hye_C 759 Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Compl 3e-35
4a0k_A 742 Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp 4e-35
1ldk_A396 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 1e-34
4a0l_E 726 Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp 2e-34
4a0c_C 741 Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 2e-34
3rtr_A 368 A Ring E3-Substrate Complex Poised For Ubiquitin-Li 2e-33
4f52_A282 Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 2e-33
4a64_A354 Crystal Structure Of The N-Terminal Domain Of Human 2e-06
4ap2_B410 Crystal Structure Of The Human Klhl11-cul3 Complex 3e-05
4apf_B388 Crystal Structure Of The Human Klhl11-cul3 Complex 4e-05
>pdb|2WZK|A Chain A, Structure Of The Cul5 N-Terminal Domain At 2.05a Resolution Length = 391 Back     alignment and structure 
Iteration: 1

 Score =  493 bits (1269), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 244/389 (62%), Positives = 295/389 (75%), Gaps = 11/389 (2%)
Query: 1   MLKDKGTQTFEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDAL 60
           +LK+KG+  FEDKW  M PIVLKLL+QE V++ +W +LF  VH VCLWD+KG SKI  AL
Sbjct: 6   LLKNKGSLQFEDKWDFMHPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGSSKIHQAL 65
Query: 61  KEDIMNFIRHAQQRVLAHEEDQALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVST 120
           KEDI+ FI+ AQ RVL+H++D ALLKAYI EW KF  QC  LP PF QLE +L+ K  S 
Sbjct: 66  KEDILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEVTLLGKQSSN 125
Query: 121 SLTNNNNKQKISAEESTVRVLMLDSWNQSIFNDIKQRLQDSAMKLVQSERNGEAFDSQLV 180
             +N         E+S VR LMLD+WN+SIF++IK RLQDSAMKLV +ER GEAFDSQLV
Sbjct: 126 KKSN--------MEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLV 177
Query: 181 IGVRESYVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAK 240
           IGVRESYVNLCSNPEDKLQIYR++FEKAY+ +TE FY  +A  +LQ NGV++YMKYADAK
Sbjct: 178 IGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAK 237
Query: 241 LHEEELRACKYLES---SSSVQLLTDCCVTVLVSSFKNTILAECPKMIXXXXXXXXXXXX 297
           L EEE RA +YLE+    +SV+ L +CCV  LV+SFK TILAEC  MI            
Sbjct: 238 LKEEEKRALRYLETRRECNSVEALMECCVNALVTSFKETILAECQGMIKRNETEKLHLMF 297
Query: 298 XXXDRIKDGITPMLQDLEAHIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKD 357
              D++ +GI PML+DLE HI++AGLADM+A+A+ IT DSEKY E+L  LFN+FSKLVK+
Sbjct: 298 SLMDKVPNGIEPMLKDLEEHIISAGLADMVAAAETITTDSEKYREQLDTLFNRFSKLVKE 357
Query: 358 AFKDDPRFLTARDKAYKNVVNDTTVFKLE 386
           AF+DDPRFLTARDKAYK VVND T+FK E
Sbjct: 358 AFQDDPRFLTARDKAYKAVVNDATIFKAE 386
>pdb|3DPL|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|3DQV|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex Length = 776 Back     alignment and structure
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin Ligase Complex Length = 760 Back     alignment and structure
>pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 366 Back     alignment and structure
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex Length = 759 Back     alignment and structure
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 742 Back     alignment and structure
>pdb|1LDK|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 396 Back     alignment and structure
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 726 Back     alignment and structure
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 741 Back     alignment and structure
>pdb|3RTR|A Chain A, A Ring E3-Substrate Complex Poised For Ubiquitin-Like Protein Transfer: Structural Insights Into Cullin-Ring Ligases Length = 368 Back     alignment and structure
>pdb|4F52|A Chain A, Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 282 Back     alignment and structure
>pdb|4A64|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Cul4b At 2.57a Resolution Length = 354 Back     alignment and structure
>pdb|4AP2|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 410 Back     alignment and structure
>pdb|4APF|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a Resolution Length = 388 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query615
1ldj_A 760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 1e-126
2hye_C 759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 1e-113
2wzk_A391 Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho 7e-89
3dpl_C 382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 4e-62
4ap2_B410 Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c 2e-61
4eoz_B364 Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro 1e-58
4a64_A354 Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo 1e-53
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Length = 760 Back     alignment and structure
 Score =  389 bits (1000), Expect = e-126
 Identities = 187/628 (29%), Positives = 308/628 (49%), Gaps = 57/628 (9%)

Query: 10  FEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLW--------------------- 48
            +  W  +R  + ++  ++ ++++ +  L+  V+  C                       
Sbjct: 1   LDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQ 60

Query: 49  DEKGPSKIVDALKEDIMNFIRHAQQRVLAHEE---DQALLKAYIQEWSKFLAQCSYLPTP 105
              G   +   L + +  F+++    +L   E   D+++LK Y Q+W  +      L   
Sbjct: 61  TPGGAQFVGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGI 120

Query: 106 FRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLDSWNQSIFNDIKQRLQDSAMKL 165
              L    V +                     +  L L +W   +F  + +++ ++ +KL
Sbjct: 121 CAYLNRHWVRRECDEGRKG----------IYEIYSLALVTWRDCLFRPLNKQVTNAVLKL 170

Query: 166 VQSERNGEAFDSQLVIGVRESYVNLCSNPED------KLQIYREHFEKAYIAATESFYTV 219
           ++ ERNGE  +++L+ GV +SYV L  N +D       L +Y+E FE  ++A TE FYT 
Sbjct: 171 IEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTR 230

Query: 220 KAAEFLQNNGVESYMKYADAKLHEEELRACKYLESSSSVQLLTDCCVTVLVSSFKNTILA 279
           ++ EFLQ N V  YMK A+A+L EE+ R   YL  S+  +L    C  VL+         
Sbjct: 231 ESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELA-RKCEQVLIEKHLEIFHT 289

Query: 280 ECPKMIKMNETLKLELMMKLLDRIKDGITPMLQDLEAHIVNAGLADMIASADIITQDSEK 339
           E   ++  ++   L  M  L+ RI+DG+  + + LE HI N GLA +    +    D + 
Sbjct: 290 EFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDPKM 349

Query: 340 YVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDTTVFKLELPTKQCTGIKTLP 399
           YV+ +L++  +++ LV  AF +D  F+ A DKA    +N+  V K+              
Sbjct: 350 YVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMA-----------QS 398

Query: 400 ESKCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLTR 459
            SK PELLA YCD LL+K+  SK     E+E  L  V++V KY+++KDVF +F+   L +
Sbjct: 399 SSKSPELLARYCDSLLKKS--SKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAK 456

Query: 460 RLILDTSADSEKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKGS 519
           RL+   SA  + E +M+  L+      +Y +KL RMFQDI VS+DLN QFK+ +  +   
Sbjct: 457 RLVHQNSASDDAEASMISKLKQ-ACGFEYTSKLQRMFQDIGVSKDLNEQFKK-HLTNSEP 514

Query: 520 IGDSINIKILNAGAWARGSERVTVSLPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNGT 579
           +    +I++L++G+W    +  T +LP ELE        FY  +HSGRKL W + +S G 
Sbjct: 515 LDLDFSIQVLSSGSWPF-QQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGE 573

Query: 580 ITFSNEVGKYDLDVTTFQMAVLFAWNER 607
           +  +    +Y L  +TFQMA+L  +N  
Sbjct: 574 LVTNCFKNRYTLQASTFQMAILLQYNTE 601
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Length = 759 Back     alignment and structure
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Length = 391 Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Length = 382 Back     alignment and structure
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} PDB: 4apf_B Length = 410 Back     alignment and structure
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Length = 364 Back     alignment and structure
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Length = 354 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query615
1ldj_A 760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 100.0
2hye_C 759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 100.0
2wzk_A391 Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho 100.0
4ap2_B410 Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c 100.0
4eoz_B364 Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro 100.0
4a64_A354 Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo 100.0
3dpl_C 382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 100.0
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Back     alignment and structure
Probab=100.00  E-value=1.2e-107  Score=935.00  Aligned_cols=577  Identities=33%  Similarity=0.570  Sum_probs=527.0

Q ss_pred             HHhhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHhhccC-------------------------CCChhHHHHHHHHHH
Q psy14846         10 FEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWD-------------------------EKGPSKIVDALKEDI   64 (615)
Q Consensus        10 fe~~W~~L~~ai~~I~~~~~~~~~s~~~lY~~vy~lc~~~-------------------------~~~~~~LY~~l~~~i   64 (615)
                      ||++|..|++||+.|+.+++++..+||++|++||++|+++                         +.+|+.||+++++++
T Consensus         1 f~~~W~~L~~ai~~I~~~~~~s~~~~~~LY~~vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~~l~~~l   80 (760)
T 1ldj_A            1 LDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFL   80 (760)
T ss_dssp             CHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCcccCCCcccccccccccccccccCcchhHHHHHHHHHHHH
Confidence            6899999999999999877899999999999999999984                         126899999999999


Q ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhhccccchhhhhhhhhhcccccccccccCcccccccchhhHHHHHHH
Q psy14846         65 MNFIRHAQQRVLAHEEDQALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLD  144 (615)
Q Consensus        65 ~~~l~~~~~~l~~~~~~~~~L~~~~~~W~~y~~~~~~l~~vf~yLdr~yv~~~~~~~l~~~~~~~~~~~~~~~i~~l~l~  144 (615)
                      +.|+.+++..+... .++.||..|.++|.+|+.++.+|+++|+||||+||++...      .|.+    +.++|+++||.
T Consensus        81 ~~~l~~~~~~~~~~-~~e~lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~------~g~~----~~~~I~~lgL~  149 (760)
T 1ldj_A           81 KNYLTNLLKDGEDL-MDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECD------EGRK----GIYEIYSLALV  149 (760)
T ss_dssp             HHHHHHHHHTTCSC-TTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-----------------CCHHHHHHH
T ss_pred             HHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHccccc------ccCC----CcccHHHHHHH
Confidence            99999887665443 4678999999999999999999999999999999987521      1211    23689999999


Q ss_pred             hhhhhHHHhhHHHHHHHHHHHHHHHhcCCccChHhHHHHHHHHHhhcCCCCc------hhhhhHHhHHHHHHHHHHHHHH
Q psy14846        145 SWNQSIFNDIKQRLQDSAMKLVQSERNGEAFDSQLVIGVRESYVNLCSNPED------KLQIYREHFEKAYIAATESFYT  218 (615)
Q Consensus       145 ~f~~~v~~~i~~~l~~~ll~~I~~~R~g~~id~~~l~~v~~~~~~L~~~~~~------~l~~Y~~~FE~~~L~~t~~yY~  218 (615)
                      +||++||.+++++++++++++|+++|+|+.||+++|+++++||++||.+..+      .+++|.+.||++||++|++||+
T Consensus       150 ~fr~~vf~~l~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~t~~fY~  229 (760)
T 1ldj_A          150 TWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYT  229 (760)
T ss_dssp             TTHHHHTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCcccccccccccchhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999865433      4789999999999999999999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCchHHHHHHHH
Q psy14846        219 VKAAEFLQNNGVESYMKYADAKLHEEELRACKYLESSSSVQLLTDCCVTVLVSSFKNTILAECPKMIKMNETLKLELMMK  298 (615)
Q Consensus       219 ~~s~~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~L~~~~t~~~l~~~l~~~LI~~~~~~il~~~~~ll~~~~~~~L~~ly~  298 (615)
                      .+|++|++++++++||++|+.++++|.+||..||++ +|.++|.++|+++||.+|.+.|++++..||++++.++|++||+
T Consensus       230 ~es~~~l~~~~~~~Yl~~~e~~l~eE~~R~~~yL~~-~t~~~l~~~~~~~Li~~~~~~l~~~~~~ll~~~~~~dL~~my~  308 (760)
T 1ldj_A          230 RESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHE-STQDELARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYN  308 (760)
T ss_dssp             HHHHHHHHHSCTTSSHHHHHHHHHHHHHTTTTTTCS-SSSHHHHHHHHHHHSSSSSHHHHHHHHHHHHSCCTTHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhcCH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999999999999999999999 8999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCCcHHHHHHHHHHHHHHhHHhHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHccCChhHHHHHHHHHHHccc
Q psy14846        299 LLDRIKDGITPMLQDLEAHIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVN  378 (615)
Q Consensus       299 L~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~lN  378 (615)
                      |++++++|++.|+..|++||.+.|.+++....+....+|..||+.|+++|++|+.++..||++|+.|..++++||+.|+|
T Consensus       309 L~~rv~~gl~~l~~~~~~~i~~~G~~~v~~~~~~~~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~al~~af~~~iN  388 (760)
T 1ldj_A          309 LVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFIN  388 (760)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHH
T ss_pred             HhCcCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999886643333468999999999999999999999999999999999999999999


Q ss_pred             CccccccccCccccCCCCCCCCCchhHHHHHHhHHhhccCCCCCCCChHHHHHHHHhHHHHhhcccChhHHHHHHHHHHH
Q psy14846        379 DTTVFKLELPTKQCTGIKTLPESKCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLT  458 (615)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~la~y~D~~lk~~~~~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La  458 (615)
                      .+.+....           .+..++||+||+|||.+||++.  ++.+++|++..|++++.||+|+++||+|+++|+++||
T Consensus       389 ~~~~~~~~-----------~~~~~~~E~la~y~D~~Lkk~~--k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~La  455 (760)
T 1ldj_A          389 NNAVTKMA-----------QSSSKSPELLARYCDSLLKKSS--KNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLA  455 (760)
T ss_dssp             SSHHHHHH-----------TSTTHHHHHHHHHHHHHHBCCS--SCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CCcccccc-----------ccccccHHHHHHHhHHHHhCCC--CCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            86432100           1246899999999999999985  6678999999999999999999999999999999999


Q ss_pred             hHhcCCCCCChHHHHHHHHHHH-HcCCChhhHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCCC
Q psy14846        459 RRLILDTSADSEKEENMVEWLR-DVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKGSIGDSINIKILNAGAWARG  537 (615)
Q Consensus       459 kRLL~~~s~s~~~E~~~i~~Lk-~~g~~~~~t~kl~~M~~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~Vlt~~~WP~~  537 (615)
                      +|||.++|.|.+.|+.||++|| +||  .+||+||++||+||..|++++..|+++..++ ...+++|+|.|||+|+||..
T Consensus       456 kRLL~~~s~s~d~E~~~i~~Lk~~~G--~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~-~~~~~~~~v~VLs~~~WP~~  532 (760)
T 1ldj_A          456 KRLVHQNSASDDAEASMISKLKQACG--FEYTSKLQRMFQDIGVSKDLNEQFKKHLTNS-EPLDLDFSIQVLSSGSWPFQ  532 (760)
T ss_dssp             HHHHTTCBSCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CCCSSEEEEEEEETTTSCCC
T ss_pred             HHhcCCCCCChHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCCCeeEEecCCCCCCCC
Confidence            9999999999999999999999 999  5999999999999999999999999987651 22367999999999999998


Q ss_pred             CCCccccCChhHHHhHHHHHHHHhccCCCceEEecccCCeEEEEEEecCceEEEEecHHHHHHHHhhcCCCCCCcCCC
Q psy14846        538 SERVTVSLPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNGTITFSNEVGKYDLDVTTFQMAVLFAWNERPLDRFQNL  615 (615)
Q Consensus       538 ~~~~~~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~l~~~~i~~~~~~~~~~l~vs~~Q~~iLl~Fn~~~~~~~~el  615 (615)
                       +..++.||++|+.+++.|++||..+|+||+|+|.|++|+|+|++.|++++|+|+||++||+|||+||+.+++|++||
T Consensus       533 -~~~~~~lP~~l~~~~~~F~~fY~~~~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~~t~~ei  609 (760)
T 1ldj_A          533 -QSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQL  609 (760)
T ss_dssp             -CCSCCCCCGGGHHHHHHHHHHTTTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGSSSEEEHHHH
T ss_pred             -CCCCCcCCHHHHHHHHHHHHHHHHhCCCCeEEEecccccEEEEEEECCceEEEEEcHHHHHHHHHhcCCCCcCHHHH
Confidence             46789999999999999999999999999999999999999999999999999999999999999999999998764
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Back     alignment and structure
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Back     alignment and structure
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} Back     alignment and structure
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Back     alignment and structure
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 615
d1ldja2394 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Hum 2e-71
d2hyec2347 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapie 8e-57
d2hyec3273 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapien 2e-55
d1ldja3276 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Huma 7e-55
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 394 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin homolog 1, Cul-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  233 bits (596), Expect = 2e-71
 Identities = 103/404 (25%), Positives = 183/404 (45%), Gaps = 41/404 (10%)

Query: 11  EDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLW---------------------D 49
           +  W  +R  + ++  ++ ++++ +  L+  V+  C                        
Sbjct: 2   DQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQT 61

Query: 50  EKGPSKIVDALKEDIMNFIRHAQQRVLAHEE---DQALLKAYIQEWSKFLAQCSYLPTPF 106
             G   +   L + +  F+++    +L   E   D+++LK Y Q+W  +      L    
Sbjct: 62  PGGAQFVGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGIC 121

Query: 107 RQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLDSWNQSIFNDIKQRLQDSAMKLV 166
             L    V +                     +  L L +W   +F  + +++ ++ +KL+
Sbjct: 122 AYLNRHWVRRECDEGRKG----------IYEIYSLALVTWRDCLFRPLNKQVTNAVLKLI 171

Query: 167 QSERNGEAFDSQLVIGVRESYVNLCSNPED------KLQIYREHFEKAYIAATESFYTVK 220
           + ERNGE  +++L+ GV +SYV L  N +D       L +Y+E FE  ++A TE FYT +
Sbjct: 172 EKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRE 231

Query: 221 AAEFLQNNGVESYMKYADAKLHEEELRACKYLESSSSVQLLTDCCVTVLVSSFKNTILAE 280
           + EFLQ N V  YMK A+A+L EE+ R  +     S+   L   C  VL+         E
Sbjct: 232 STEFLQQNPVTEYMKKAEARLLEEQRR-VQVYLHESTQDELARKCEQVLIEKHLEIFHTE 290

Query: 281 CPKMIKMNETLKLELMMKLLDRIKDGITPMLQDLEAHIVNAGLADMIASADIITQDSEKY 340
              ++  ++   L  M  L+ RI+DG+  + + LE HI N GLA +    +    D + Y
Sbjct: 291 FQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMY 350

Query: 341 VERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDTTVFK 384
           V+ +L++  +++ LV  AF +D  F+ A DKA    +N+  V K
Sbjct: 351 VQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTK 394
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 273 Back     information, alignment and structure
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 276 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query615
d1ldja2394 Cullin homolog 1, Cul-1 {Human (Homo sapiens) [Tax 100.0
d2hyec2347 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ldja3276 Cullin homolog 1, cul-1 {Human (Homo sapiens) [Tax 100.0
d2hyec3273 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin homolog 1, Cul-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-61  Score=513.76  Aligned_cols=360  Identities=28%  Similarity=0.502  Sum_probs=329.2

Q ss_pred             HHhhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHhhccCCC-------------------------ChhHHHHHHHHHH
Q psy14846         10 FEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEK-------------------------GPSKIVDALKEDI   64 (615)
Q Consensus        10 fe~~W~~L~~ai~~I~~~~~~~~~s~~~lY~~vy~lc~~~~~-------------------------~~~~LY~~l~~~i   64 (615)
                      .|++|..|++||++|+++++++..+||++|++||++|++++.                         .|+.||+++++.+
T Consensus         1 ~d~~W~~L~~ai~~I~~~~~~~~~~~~~lY~~vy~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~~l~~~l   80 (394)
T d1ldja2           1 LDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFL   80 (394)
T ss_dssp             CHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCccccccccccchhhhhhccccchhhhHHHHHHHHHHHHH
Confidence            378999999999999988889989999999999999987421                         3789999999999


Q ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhhccccchhhhhhhhhhcccccccccccCcccccccchhhHHHHHHH
Q psy14846         65 MNFIRHAQQRVLAHEEDQALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLD  144 (615)
Q Consensus        65 ~~~l~~~~~~l~~~~~~~~~L~~~~~~W~~y~~~~~~l~~vf~yLdr~yv~~~~~~~l~~~~~~~~~~~~~~~i~~l~l~  144 (615)
                      +.|+.++++.+... .++++|..|.+.|.+|+.++.+|+++|+||||+|+.+++.      .|.+    +.++|+++|+.
T Consensus        81 ~~~l~~i~~~~~~~-~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~------~~~~----~~~~I~~~~l~  149 (394)
T d1ldja2          81 KNYLTNLLKDGEDL-MDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECD------EGRK----GIYEIYSLALV  149 (394)
T ss_dssp             HHHHHHHHHTTCSC-TTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-----------------CCHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccc------cccc----ccchHHHHHHH
Confidence            99999988776553 4678999999999999999999999999999999987521      1111    34789999999


Q ss_pred             hhhhhHHHhhHHHHHHHHHHHHHHHhcCCccChHhHHHHHHHHHhhcCCCC------chhhhhHHhHHHHHHHHHHHHHH
Q psy14846        145 SWNQSIFNDIKQRLQDSAMKLVQSERNGEAFDSQLVIGVRESYVNLCSNPE------DKLQIYREHFEKAYIAATESFYT  218 (615)
Q Consensus       145 ~f~~~v~~~i~~~l~~~ll~~I~~~R~g~~id~~~l~~v~~~~~~L~~~~~------~~l~~Y~~~FE~~~L~~t~~yY~  218 (615)
                      +|++.||.+++++++++++++|+++|+|+.+|+.+|+++++|++.||.+..      ..+++|.+.||++||++|.+||+
T Consensus       150 ~fr~~v~~~~~~~l~~~il~~I~~~R~g~~i~~~li~~~i~~l~~l~~~~~~~~~~~~~~~~Y~~~FE~~~L~~t~~~Y~  229 (394)
T d1ldja2         150 TWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYT  229 (394)
T ss_dssp             TTHHHHTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999985432      24679999999999999999999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCchHHHHHHHH
Q psy14846        219 VKAAEFLQNNGVESYMKYADAKLHEEELRACKYLESSSSVQLLTDCCVTVLVSSFKNTILAECPKMIKMNETLKLELMMK  298 (615)
Q Consensus       219 ~~s~~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~L~~~~t~~~l~~~l~~~LI~~~~~~il~~~~~ll~~~~~~~L~~ly~  298 (615)
                      +++.+|++++++++|+++|+.++++|.+||+.||++ +|.+++.+.|+++||.+|.+.|.+++..||++++.++|++||+
T Consensus       230 ~~~~~~l~~~~~~eYl~~v~~~l~eE~~r~~~yl~~-~t~~~l~~~l~~~LI~~~~~~l~~~~~~ll~~~~~~~L~~lY~  308 (394)
T d1ldja2         230 RESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHE-STQDELARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYN  308 (394)
T ss_dssp             HHHHHHHHHSCTTSSHHHHHHHHHHHHHTTTTTTCS-SSSHHHHHHHHHHHSSSSSHHHHHHHHHHHHSCCTTHHHHHHH
T ss_pred             HHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHccCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            999999999999999999999999999999999999 8999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCCcHHHHHHHHHHHHHHhHHhHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHccCChhHHHHHHHHHHHccc
Q psy14846        299 LLDRIKDGITPMLQDLEAHIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVN  378 (615)
Q Consensus       299 L~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~lN  378 (615)
                      |++++++|++.|++.|++||.+.|.+++....+...++|..||+.|+++|++|+.++..||++|+.|.+++++||+.|+|
T Consensus       309 L~~rv~~~~~~l~~~~~~~I~~~G~~~i~~~~~~~~~~~~~~V~~ll~l~~~~~~ii~~~F~~d~~f~~~l~~af~~fiN  388 (394)
T d1ldja2         309 LVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFIN  388 (394)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhhccchHHHHHHHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999887766555678999999999999999999999999999999999999999999


Q ss_pred             Ccc
Q psy14846        379 DTT  381 (615)
Q Consensus       379 ~~~  381 (615)
                      +++
T Consensus       389 ~n~  391 (394)
T d1ldja2         389 NNA  391 (394)
T ss_dssp             SSH
T ss_pred             ccc
Confidence            874
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure