Psyllid ID: psy14861
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1648 | 2.2.26 [Sep-21-2011] | |||||||
| P97526 | 2820 | Neurofibromin OS=Rattus n | yes | N/A | 0.531 | 0.310 | 0.655 | 0.0 | |
| P21359 | 2839 | Neurofibromin OS=Homo sap | yes | N/A | 0.531 | 0.308 | 0.643 | 0.0 | |
| Q04690 | 2841 | Neurofibromin OS=Mus musc | yes | N/A | 0.531 | 0.308 | 0.640 | 0.0 | |
| P19158 | 3079 | Inhibitory regulator prot | yes | N/A | 0.246 | 0.132 | 0.256 | 2e-27 | |
| P18963 | 3092 | Inhibitory regulator prot | no | N/A | 0.496 | 0.264 | 0.229 | 4e-25 | |
| Q54Y08 | 877 | Probable Ras GTPase-activ | no | N/A | 0.162 | 0.305 | 0.281 | 4e-24 | |
| P50904 | 1038 | Ras GTPase-activating pro | no | N/A | 0.174 | 0.277 | 0.276 | 4e-22 | |
| P20936 | 1047 | Ras GTPase-activating pro | no | N/A | 0.174 | 0.275 | 0.273 | 5e-22 | |
| Q9Z268 | 799 | RasGAP-activating-like pr | no | N/A | 0.164 | 0.339 | 0.285 | 2e-21 | |
| P09851 | 1044 | Ras GTPase-activating pro | no | N/A | 0.174 | 0.275 | 0.269 | 3e-21 |
| >sp|P97526|NF1_RAT Neurofibromin OS=Rattus norvegicus GN=Nf1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1238 bits (3203), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 589/898 (65%), Positives = 725/898 (80%), Gaps = 22/898 (2%)
Query: 721 YVRHIDMTVHAVHIKTKLCNLIEAMMRRRDDLAFRREMSFRNKLVDYLMDWVLGSANQVT 780
YVR + VHA+ IKTKLC L+E MM RRDDL+F +EM FRNK+V+YL DWV+G++NQ
Sbjct: 1000 YVRVLGNMVHAIQIKTKLCQLVEVMMARRDDLSFCQEMKFRNKMVEYLTDWVMGTSNQAA 1059
Query: 781 IPPTPGESFVSISRDLDQACMDAVAALLKGLPLQPEESDKGDLMEAKSSLFLKYFTLFMN 840
+ ++RDLDQA M+AV +LL GLPLQPEE D +LMEAKS LFLKYFTLFMN
Sbjct: 1060 -----DDDVKCLTRDLDQASMEAVVSLLAGLPLQPEEGDGVELMEAKSQLFLKYFTLFMN 1114
Query: 841 LLNDCTDSQELDKE-ASRDRSKNDSSSNLRSSIIEAMSNLLSANIDSGLMHSIALGYHQD 899
LLNDC++ ++ + + R R + ++LR + AMSNLL+AN+DSGLMHSI LGYH+D
Sbjct: 1115 LLNDCSEVEDENAQTGGRKRGMSRRLASLRHCTVLAMSNLLNANVDSGLMHSIGLGYHKD 1174
Query: 900 LQTRAAFMEVLTKILQQGTEFNTLAETVLADRFEELVKLVTLISDKGELSIAMALANVVS 959
LQTRA FMEVLTKILQQGTEF+TLAETVLADRFE LV+LVT++ D+GEL IAMALANVV
Sbjct: 1175 LQTRATFMEVLTKILQQGTEFDTLAETVLADRFERLVELVTMMGDQGELPIAMALANVVP 1234
Query: 960 TSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNSLGSKLMAFCFKIY 1019
SQ DELARV VTLFD++H+L LLWNMF +EVE++D MQTLFRGNSL SK+M FCFK+Y
Sbjct: 1235 CSQWDELARVLVTLFDSRHLLYQLLWNMFSKEVELADSMQTLFRGNSLASKIMTFCFKVY 1294
Query: 1020 GASYLQNLLEPLISPLL---DKAHVAFEVDPARLDPSENIENNRRELISWTKKVFDAIID 1076
GA+YLQ LL+PL+ ++ D HV+FEVDP RL+PSE++E N+R L+ T+K F AII
Sbjct: 1295 GATYLQKLLDPLLRIIITSSDWQHVSFEVDPTRLEPSESLEENQRNLLQMTEKFFHAIIS 1354
Query: 1077 SADNFPPQLRSMCHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKT 1136
S+ FP QLRS+CHCLYQV+S+RF PQN+IGAVG+ +FLRFINPAIV+P E GI++K
Sbjct: 1355 SSSEFPSQLRSVCHCLYQVVSQRF---PQNSIGAVGSAMFLRFINPAIVSPYEAGILDKK 1411
Query: 1137 VPPPVKRGLMLMSKILQNIANHVEFSKEAHMIPFNDFLRAHFVIARQFFIQIASDCVTED 1196
PP ++RGL LMSK+LQ+IANHV F+KE HM PFNDF++++F +AR+FF+ IASDC T D
Sbjct: 1412 PPPRIERGLKLMSKVLQSIANHVLFTKEEHMRPFNDFVKSNFDLARRFFLDIASDCPTSD 1471
Query: 1197 AGAHSMSFISDTNVLALHRLLYNHQEKIGDYLSSSRDHKVVGRRPFDKMATLLAYLGPPE 1256
A HS+SFISD NVLALHRLL+N+QEKIG YLSS+RDHK VGRRPFDKMATLLAYLGPPE
Sbjct: 1472 AVNHSLSFISDGNVLALHRLLWNNQEKIGQYLSSNRDHKAVGRRPFDKMATLLAYLGPPE 1531
Query: 1257 HKPVESHMFFSSYARWSSIDMSNNNFEELMMKRNMQEKEEFKSIKSLNIFYQAGKSRNGH 1316
HKPV WSS++++++ FEE M + + EKEEFK++K+L+IFYQAG S+ G+
Sbjct: 1532 HKPVAD-------THWSSLNLTSSKFEEFMTRHQVHEKEEFKALKTLSIFYQAGTSKAGN 1584
Query: 1317 PVFYYIARRYKTFETNADLLIYHVILTMKPFCHAPYELVIDFTHASSENRFKTEFLQKWF 1376
P+FYY+ARR+KT + N DLLIYHV+LT+KP+ PYE+V+D TH NRFKT+FL KWF
Sbjct: 1585 PIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYEIVVDLTHTGPSNRFKTDFLSKWF 1644
Query: 1377 YVLSEVAYANIHAAYIYNCNSWVREYTKYHEKILLPIFRNNKKLIFLDSPSKLNDYIDHN 1436
V AY N+ A YIYNCNSWVREYTKYHE++L + + +K+LIF+D P KL ++I+H
Sbjct: 1645 VVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGL-KGSKRLIFIDCPGKLAEHIEHE 1703
Query: 1437 QQKLPGATLALDEDLKVFNNGLKLSHKDTKVAIKVGPTAVQITSLEKTKVLSHSVLLNDI 1496
QQKLP ATLAL+EDLKVF+N LKL+HKDTKV+IKVG TAVQ+TS E+TKVL SV LNDI
Sbjct: 1704 QQKLPAATLALEEDLKVFHNALKLAHKDTKVSIKVGSTAVQVTSAERTKVLGQSVFLNDI 1763
Query: 1497 YYAHEIEEVCLVDDNQFTLSFVKDSQTQVLSFIHNECDSIVQAIIHIRNRWELSQSDSLT 1556
YYA EIEE+CLVD+NQFTL+ +Q L+F+H EC++IVQ+IIHIR RWELSQ DS+
Sbjct: 1764 YYASEIEEICLVDENQFTLTIA--NQGTPLTFMHQECEAIVQSIIHIRTRWELSQPDSIP 1821
Query: 1557 VHQKIRPKDVPGTLLNMALLNLGSVDPNLRTAAYNLLCALTATFDLKIEGQLLETSDM 1614
H KIRPKDVPGTLLN+ALLNLGS DP+LR+AAYNLLCALT TF+LKIEGQLLETS +
Sbjct: 1822 QHTKIRPKDVPGTLLNIALLNLGSSDPSLRSAAYNLLCALTCTFNLKIEGQLLETSGL 1879
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Stimulates the GTPase activity of Ras. NF1 shows greater affinity for Ras GAP, but lower specific activity. May be a regulator of Ras activity. Rattus norvegicus (taxid: 10116) |
| >sp|P21359|NF1_HUMAN Neurofibromin OS=Homo sapiens GN=NF1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q04690|NF1_MOUSE Neurofibromin OS=Mus musculus GN=Nf1 PE=1 SV=1 | Back alignment and function description |
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| >sp|P19158|IRA2_YEAST Inhibitory regulator protein IRA2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IRA2 PE=1 SV=2 | Back alignment and function description |
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| >sp|P18963|IRA1_YEAST Inhibitory regulator protein IRA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IRA1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q54Y08|NGAP_DICDI Probable Ras GTPase-activating-like protein ngap OS=Dictyostelium discoideum GN=ngap PE=2 SV=1 | Back alignment and function description |
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| >sp|P50904|RASA1_RAT Ras GTPase-activating protein 1 OS=Rattus norvegicus GN=Rasa1 PE=3 SV=1 | Back alignment and function description |
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| >sp|P20936|RASA1_HUMAN Ras GTPase-activating protein 1 OS=Homo sapiens GN=RASA1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9Z268|RASL1_MOUSE RasGAP-activating-like protein 1 OS=Mus musculus GN=Rasal1 PE=2 SV=2 | Back alignment and function description |
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| >sp|P09851|RASA1_BOVIN Ras GTPase-activating protein 1 OS=Bos taurus GN=RASA1 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1648 | ||||||
| 345490029 | 2731 | PREDICTED: neurofibromin-like [Nasonia v | 0.541 | 0.326 | 0.789 | 0.0 | |
| 170053096 | 2771 | neurofibromin [Culex quinquefasciatus] g | 0.542 | 0.322 | 0.779 | 0.0 | |
| 312374472 | 2545 | hypothetical protein AND_15871 [Anophele | 0.542 | 0.351 | 0.782 | 0.0 | |
| 347969332 | 3047 | AGAP003140-PB [Anopheles gambiae str. PE | 0.542 | 0.293 | 0.780 | 0.0 | |
| 347969334 | 2790 | AGAP003140-PA [Anopheles gambiae str. PE | 0.542 | 0.320 | 0.780 | 0.0 | |
| 157118704 | 2762 | neurofibromin [Aedes aegypti] gi|1088756 | 0.542 | 0.323 | 0.777 | 0.0 | |
| 195110323 | 2800 | GI24684 [Drosophila mojavensis] gi|19391 | 0.543 | 0.32 | 0.778 | 0.0 | |
| 195389612 | 2623 | GJ23901 [Drosophila virilis] gi|19415155 | 0.542 | 0.340 | 0.776 | 0.0 | |
| 328793485 | 2741 | PREDICTED: neurofibromin [Apis mellifera | 0.541 | 0.325 | 0.778 | 0.0 | |
| 194743704 | 2801 | GF16794 [Drosophila ananassae] gi|190627 | 0.543 | 0.319 | 0.775 | 0.0 |
| >gi|345490029|ref|XP_001602698.2| PREDICTED: neurofibromin-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 1491 bits (3861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 712/902 (78%), Positives = 797/902 (88%), Gaps = 10/902 (1%)
Query: 721 YVRHIDMTVHAVHIKTKLCNLIEAMMRRRDDLAFRREMSFRNKLVDYLMDWVLGSANQVT 780
YVRH+DMTVHA+HIKTKLC L+E MM+RRDDLAFR+EM FRNKLV+YL DWV+G+ +
Sbjct: 964 YVRHLDMTVHAIHIKTKLCQLVEVMMKRRDDLAFRQEMKFRNKLVEYLTDWVMGTTH--P 1021
Query: 781 IPPTPGESFVSISRDLDQACMDAVAALLKGLPLQPEESDKGDLMEAKSSLFLKYFTLFMN 840
I P G I+R+LDQACM+AV ALL+GLPLQPEESD+GDLMEAKS LFLKYFTLFMN
Sbjct: 1022 IAPPGGSDSTLITRELDQACMEAVGALLRGLPLQPEESDRGDLMEAKSQLFLKYFTLFMN 1081
Query: 841 LLNDCTDSQELDKEA-SRDRSKNDSSSNLRSSIIEAMSNLLSANIDSGLMHSIALGYHQD 899
LLNDC D+ +KE SR R S LR++ I+AMSNLLSANIDSGLMHSI LGY++D
Sbjct: 1082 LLNDCNDAAAEEKEVVSRQRLTTGKLSTLRNATIQAMSNLLSANIDSGLMHSIDLGYNRD 1141
Query: 900 LQTRAAFMEVLTKILQQGTEFNTLAETVLADRFEELVKLVTLISDKGELSIAMALANVVS 959
LQTRAAFMEVLTKILQQGTEF+TLAETVLADRFE+LV+LVT+ISDKGEL IAMALANVV+
Sbjct: 1142 LQTRAAFMEVLTKILQQGTEFDTLAETVLADRFEQLVQLVTMISDKGELPIAMALANVVT 1201
Query: 960 TSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNSLGSKLMAFCFKIY 1019
T+QMDELARVFVTLFDAKH+L PLLWNMFYREVEVSDCMQTLFRGNSLGSK+MAFCFKIY
Sbjct: 1202 TNQMDELARVFVTLFDAKHLLSPLLWNMFYREVEVSDCMQTLFRGNSLGSKIMAFCFKIY 1261
Query: 1020 GASYLQNLLEPLISPLLDKAHVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSAD 1079
GASYLQ+LLEPLI+PLL +FEVD AR+D +E+IE N R LI+ T+KVFDAI+ SA+
Sbjct: 1262 GASYLQSLLEPLITPLLSDPMTSFEVDSARIDVNEDIEQNGRNLIALTQKVFDAIVSSAE 1321
Query: 1080 NFPPQLRSMCHCLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPP 1139
FPPQLRSMCHCLYQVLSKRFP PQNNIGAVGTVIFLRFINPAIV+PQEMGI+NK VPP
Sbjct: 1322 RFPPQLRSMCHCLYQVLSKRFPQYPQNNIGAVGTVIFLRFINPAIVSPQEMGIVNKPVPP 1381
Query: 1140 PVKRGLMLMSKILQNIANHVEFSKEAHMIPFNDFLRAHFVIARQFFIQIASDCVTEDAGA 1199
PVKRGLMLMSKILQNIANHVEFSKE HM+PFNDFLRAHF IAR+FFIQIASDC T D
Sbjct: 1382 PVKRGLMLMSKILQNIANHVEFSKEQHMLPFNDFLRAHFEIARRFFIQIASDCETVDQAN 1441
Query: 1200 HSMSFISDTNVLALHRLLYNHQEKIGDYLSSSRDHKVVGRRPFDKMATLLAYLGPPEHKP 1259
H MSF+SD NVLALHRLL+NHQE+IGDYLSSSRDHK VGRRPFDKMATLLAYLGPPEHKP
Sbjct: 1442 HPMSFVSDANVLALHRLLWNHQERIGDYLSSSRDHKAVGRRPFDKMATLLAYLGPPEHKP 1501
Query: 1260 VESHMFF-SSYARWSSIDMSNNNFEELMMKRNMQEKEEFKSIKSLNIFYQAGKSRNGHPV 1318
V+SH+ F SSYARWSSIDMS+ NFEE+M+K NM EK+EFK+IKSLNIFYQAG S+ G+PV
Sbjct: 1502 VDSHLLFSSSYARWSSIDMSSTNFEEIMVKHNMHEKDEFKNIKSLNIFYQAGTSKLGYPV 1561
Query: 1319 FYYIARRYKTFETNADLLIYHVILTMKPFCHAPYELVIDFTHASSENRFKTEFLQKWFYV 1378
FYYIARRYK E+N DLLIYHVILT+KPFCH+P+ELVIDFTH S+NRF+TEFLQKWFYV
Sbjct: 1562 FYYIARRYKIGESNGDLLIYHVILTLKPFCHSPFELVIDFTHTCSDNRFRTEFLQKWFYV 1621
Query: 1379 LSEVAYANIHAAYIYNCNSWVREYTKYHEKILLPIFRNNKKLIFLDSPSKLNDYIDHNQQ 1438
L EVAY NIHAAYIYNCNSWVREYTKYH++IL P+ + N+K+ F+D P + D+I+ +QQ
Sbjct: 1622 LPEVAYENIHAAYIYNCNSWVREYTKYHDRILAPL-KGNRKVFFVDGPGRFKDHIELDQQ 1680
Query: 1439 KLPGATLALDEDLKVFNNGLKLSHKDTKVAIKVGPTAVQITSLEKTKVLSHSVLLNDIYY 1498
+LPGATL+LDEDLKVF + LKLSHKDTKV+IKVGPTA+QITS EK KVLSHSVLLND+YY
Sbjct: 1681 RLPGATLSLDEDLKVFTSALKLSHKDTKVSIKVGPTAIQITSAEKCKVLSHSVLLNDVYY 1740
Query: 1499 AHEIEEVCLVDDNQFTLSFVKDSQTQVLSFIHNECDSIVQAIIHIRNRWELSQSDSLTVH 1558
A EIEEVCLVDDNQFTL+ ++ LSFIHN+CDSIVQAIIHIRNRWELSQ DS++VH
Sbjct: 1741 ASEIEEVCLVDDNQFTLTISNEAGP--LSFIHNDCDSIVQAIIHIRNRWELSQPDSMSVH 1798
Query: 1559 QKIRPKDVPGTLLNMALLNLGSVDPNLRTAAYNLLCALTATFDLKIEGQLLETSDM---S 1615
KIRPKDVPGTLLNMALLNLGS DPNLRTAAYN LCALTATFDLKIEGQLLETS + S
Sbjct: 1799 PKIRPKDVPGTLLNMALLNLGSSDPNLRTAAYNQLCALTATFDLKIEGQLLETSGLCIPS 1858
Query: 1616 NN 1617
NN
Sbjct: 1859 NN 1860
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Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170053096|ref|XP_001862517.1| neurofibromin [Culex quinquefasciatus] gi|167873772|gb|EDS37155.1| neurofibromin [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
| >gi|312374472|gb|EFR22022.1| hypothetical protein AND_15871 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
| >gi|347969332|ref|XP_003436404.1| AGAP003140-PB [Anopheles gambiae str. PEST] gi|333468476|gb|EGK96961.1| AGAP003140-PB [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
| >gi|347969334|ref|XP_312829.4| AGAP003140-PA [Anopheles gambiae str. PEST] gi|333468475|gb|EAA08440.4| AGAP003140-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
| >gi|157118704|ref|XP_001653220.1| neurofibromin [Aedes aegypti] gi|108875642|gb|EAT39867.1| AAEL008371-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
| >gi|195110323|ref|XP_001999731.1| GI24684 [Drosophila mojavensis] gi|193916325|gb|EDW15192.1| GI24684 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
| >gi|195389612|ref|XP_002053470.1| GJ23901 [Drosophila virilis] gi|194151556|gb|EDW66990.1| GJ23901 [Drosophila virilis] | Back alignment and taxonomy information |
|---|
| >gi|328793485|ref|XP_624747.3| PREDICTED: neurofibromin [Apis mellifera] | Back alignment and taxonomy information |
|---|
| >gi|194743704|ref|XP_001954340.1| GF16794 [Drosophila ananassae] gi|190627377|gb|EDV42901.1| GF16794 [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1648 | ||||||
| FB|FBgn0015269 | 2802 | Nf1 "Neurofibromin 1" [Drosoph | 0.550 | 0.324 | 0.751 | 0.0 | |
| UNIPROTKB|E1BTI4 | 2814 | NF1 "Neurofibromin" [Gallus ga | 0.546 | 0.320 | 0.630 | 0.0 | |
| UNIPROTKB|H0Y465 | 2502 | NF1 "Neurofibromin truncated" | 0.546 | 0.360 | 0.628 | 0.0 | |
| RGD|3168 | 2820 | Nf1 "neurofibromin 1" [Rattus | 0.546 | 0.319 | 0.627 | 0.0 | |
| UNIPROTKB|F1LM28 | 2801 | Nf1 "Neurofibromin" [Rattus no | 0.546 | 0.321 | 0.627 | 0.0 | |
| UNIPROTKB|F1PIZ0 | 2800 | NF1 "Uncharacterized protein" | 0.546 | 0.321 | 0.627 | 0.0 | |
| UNIPROTKB|I3LV00 | 2795 | NF1 "Uncharacterized protein" | 0.546 | 0.322 | 0.627 | 0.0 | |
| UNIPROTKB|F1MHW1 | 2822 | NF1 "Uncharacterized protein" | 0.544 | 0.317 | 0.573 | 3.6e-304 | |
| UNIPROTKB|E1C9F6 | 2835 | NF1 "Neurofibromin" [Gallus ga | 0.545 | 0.317 | 0.523 | 4.7e-274 | |
| UNIPROTKB|P21359 | 2839 | NF1 "Neurofibromin" [Homo sapi | 0.545 | 0.316 | 0.519 | 1e-271 |
| FB|FBgn0015269 Nf1 "Neurofibromin 1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 3566 (1260.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 698/929 (75%), Positives = 786/929 (84%)
Query: 706 HIDMT-VHAVHIKTKLYVRHIDMTVHAVHIKTKLCNLIEAMMRRRDDLAFRREMSFRNKL 764
H+ +T + + + YVRH+DMTV+A+ IKTKLC L+E MM+RRDDLAFR+EM FRNKL
Sbjct: 1011 HLGVTSIEGMMLGIVRYVRHLDMTVYAIRIKTKLCQLVEVMMKRRDDLAFRQEMKFRNKL 1070
Query: 765 VDYLMDWVLGSANQVTIPPTPGESFVS-----ISRDLDQACMDAVAALLKGLPLQPEESD 819
V+YL DWV+G+++Q+ PP+ ++ + I RDLDQACM+AVAALL+GLPLQPEESD
Sbjct: 1071 VEYLTDWVMGTSHQIA-PPSSADAAILTNTSLIFRDLDQACMEAVAALLRGLPLQPEESD 1129
Query: 820 KGDLMEAKSSLFLKYFTLFMNLLNDCTDSQELDKEAXXX-------XXXXXXXXXXXXXI 872
+GDLM+AKS+LFLKYFTLFMNLLNDC DS E +KE
Sbjct: 1130 RGDLMDAKSALFLKYFTLFMNLLNDCIDSSEAEKEMNNTPLLPPRPRMAAGKLTALRNAT 1189
Query: 873 IEAMSNLLSANIDSGLMHSIALGYHQDLQTRAAFMEVLTKILQQGTEFNTLAETVLADRF 932
I AMSNLL ANIDSGLMHSI LGY+ DLQTRAAFMEVLT+ILQQGTEF+TLAETVLADRF
Sbjct: 1190 ILAMSNLLGANIDSGLMHSIDLGYNPDLQTRAAFMEVLTQILQQGTEFDTLAETVLADRF 1249
Query: 933 EELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREV 992
E+LV+LVT+ISDKGEL IAMALANVV+TSQMDELARV VTLFDAKH+L PLLWNMFYREV
Sbjct: 1250 EQLVQLVTMISDKGELPIAMALANVVTTSQMDELARVLVTLFDAKHLLSPLLWNMFYREV 1309
Query: 993 EVSDCMQTLFRGNSLGSKLMAFCFKIYGASYLQNLLEPLISPLLDKAH-VAFEVDPARLD 1051
EVSDCMQTLFRGNSLGSK+MAFCFKIYGASYLQ LLEPLI PLLD+ FEVDPARLD
Sbjct: 1310 EVSDCMQTLFRGNSLGSKIMAFCFKIYGASYLQMLLEPLIRPLLDEEEETCFEVDPARLD 1369
Query: 1052 PSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQNNIGAV 1111
P+E+IE +R LI+ T+KVFDAII+S+D PPQLRSMCHCLYQVLSKRFP QNNIGAV
Sbjct: 1370 PTEDIEQHRNNLIALTQKVFDAIINSSDRLPPQLRSMCHCLYQVLSKRFPNLLQNNIGAV 1429
Query: 1112 GTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFSKEAHMIPFN 1171
GTVIFLRFINPAIV+PQE+GI++K V KRGLMLMSKILQNIANHVEFSKE HM+ FN
Sbjct: 1430 GTVIFLRFINPAIVSPQELGIVDKQVHSSAKRGLMLMSKILQNIANHVEFSKEQHMLCFN 1489
Query: 1172 DFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLYNHQEKIGDYLSSS 1231
DFLR HF R+FFIQIASDC T D +HSMSFISD NVLALHRLL+ HQEKIGDYLSSS
Sbjct: 1490 DFLRDHFEAGRRFFIQIASDCETVDQTSHSMSFISDANVLALHRLLWTHQEKIGDYLSSS 1549
Query: 1232 RDHKVVGRRPFDKMATLLAYLGPPEHKPVESHMFFSSYARWSSIDMSNNNFEELMMKRNM 1291
RDHK VGRRPFDKMATLLAYLGPPEHKPV+SHM FSSYARWSSIDMS+ NFEE+M+K M
Sbjct: 1550 RDHKAVGRRPFDKMATLLAYLGPPEHKPVDSHMMFSSYARWSSIDMSSTNFEEIMVKHQM 1609
Query: 1292 QEKEEFKSIKSLNIFYQAGKSRNGHPVFYYIARRYKTFETNADLLIYHVILTMKPFCHAP 1351
EKEEFK++KS+NIFYQAG S++G+PVFYYIARRYK ETN DLLIYHVILT+KPFCH+P
Sbjct: 1610 HEKEEFKTLKSMNIFYQAGTSKSGYPVFYYIARRYKIGETNGDLLIYHVILTLKPFCHSP 1669
Query: 1352 YELVIDFTHASSENRFKTEFLQKWFYVLSEVXXXXXXXXXXXXCNSWVREYTKYHEKILL 1411
+E+VIDFTH S+NRF+TEFLQKWFYVL V CNSWVREYTK+H++IL
Sbjct: 1670 FEVVIDFTHTCSDNRFRTEFLQKWFYVLPTVAYENVHAVYIYNCNSWVREYTKFHDRILA 1729
Query: 1412 PIFRNNKKLIFLDSPSKLNDYIDHNQQKLPGATLALDEDLKVFNNGLKLSHKDTKVAIKV 1471
P+ + N+KL+FL+SP+KL D+ID QQKLPGATL+LDEDLKVF+N LKLSHKDTKVAIKV
Sbjct: 1730 PL-KGNRKLLFLESPNKLTDFIDAEQQKLPGATLSLDEDLKVFSNALKLSHKDTKVAIKV 1788
Query: 1472 GPTAVQITSLEKTKVLSHSVLLNDIYYAHEIEEVCLVDDNQFTLSFVKDSQTQVLSFIHN 1531
GPTA+QITS EKTKVL+HSVLLND+YYA EIEEVCLVDDNQFTLS +S LSFIHN
Sbjct: 1789 GPTALQITSAEKTKVLAHSVLLNDVYYASEIEEVCLVDDNQFTLSITNESGQ--LSFIHN 1846
Query: 1532 ECDSIVQAIIHIRNRWELSQSDSLTVHQKIRPKDVPGTLLNMALLNLGSVDPNLRTAAYN 1591
+CD+IVQAIIHIRNRWELSQ DS+TVHQKIRPKDVPGTLLNMALLNLGS DPNLRTAAYN
Sbjct: 1847 DCDNIVQAIIHIRNRWELSQPDSVTVHQKIRPKDVPGTLLNMALLNLGSCDPNLRTAAYN 1906
Query: 1592 LLCALTATFDLKIEGQLLETSDM---SNN 1617
LLCALTATFDLKIEGQLLET + SNN
Sbjct: 1907 LLCALTATFDLKIEGQLLETQGLCIPSNN 1935
|
|
| UNIPROTKB|E1BTI4 NF1 "Neurofibromin" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|H0Y465 NF1 "Neurofibromin truncated" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| RGD|3168 Nf1 "neurofibromin 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1LM28 Nf1 "Neurofibromin" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PIZ0 NF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|I3LV00 NF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1MHW1 NF1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1C9F6 NF1 "Neurofibromin" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P21359 NF1 "Neurofibromin" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P21359 | NF1_HUMAN | No assigned EC number | 0.6430 | 0.5315 | 0.3085 | yes | N/A |
| Q04690 | NF1_MOUSE | No assigned EC number | 0.6409 | 0.5315 | 0.3083 | yes | N/A |
| P97526 | NF1_RAT | No assigned EC number | 0.6559 | 0.5315 | 0.3106 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1648 | |||
| cd05130 | 332 | cd05130, RasGAP_Neurofibromin, Ras-GTPase Activati | 0.0 | |
| cd05130 | 332 | cd05130, RasGAP_Neurofibromin, Ras-GTPase Activati | 0.0 | |
| smart00323 | 344 | smart00323, RasGAP, GTPase-activator protein for R | 1e-100 | |
| smart00323 | 344 | smart00323, RasGAP, GTPase-activator protein for R | 1e-100 | |
| cd13313 | 110 | cd13313, PH_NF1, Neurofibromin-1 Pleckstrin homolo | 2e-59 | |
| cd05392 | 317 | cd05392, RasGAP_Neurofibromin_like, Ras-GTPase Act | 2e-58 | |
| cd05392 | 317 | cd05392, RasGAP_Neurofibromin_like, Ras-GTPase Act | 2e-58 | |
| cd04519 | 256 | cd04519, RasGAP, Ras GTPase Activating Domain | 3e-56 | |
| cd04519 | 256 | cd04519, RasGAP, Ras GTPase Activating Domain | 3e-56 | |
| pfam00616 | 180 | pfam00616, RasGAP, GTPase-activator protein for Ra | 5e-53 | |
| pfam00616 | 180 | pfam00616, RasGAP, GTPase-activator protein for Ra | 5e-53 | |
| cd05128 | 269 | cd05128, RasGAP_GAP1_like, Ras-GTPase Activating D | 5e-33 | |
| cd05128 | 269 | cd05128, RasGAP_GAP1_like, Ras-GTPase Activating D | 5e-33 | |
| cd05137 | 356 | cd05137, RasGAP_CLA2_BUD2, Ras-GTPase Activating D | 1e-31 | |
| cd05137 | 356 | cd05137, RasGAP_CLA2_BUD2, Ras-GTPase Activating D | 1e-31 | |
| cd05391 | 328 | cd05391, RasGAP_p120GAP, Ras-GTPase Activating Dom | 3e-30 | |
| cd05391 | 328 | cd05391, RasGAP_p120GAP, Ras-GTPase Activating Dom | 3e-30 | |
| cd05136 | 324 | cd05136, RasGAP_DAB2IP, Ras-GTPase Activating Doma | 3e-30 | |
| cd05136 | 324 | cd05136, RasGAP_DAB2IP, Ras-GTPase Activating Doma | 3e-30 | |
| pfam13716 | 149 | pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain | 2e-29 | |
| cd05127 | 331 | cd05127, RasGAP_IQGAP_like, Ras-GTPase Activating | 2e-25 | |
| cd05127 | 331 | cd05127, RasGAP_IQGAP_like, Ras-GTPase Activating | 2e-25 | |
| cd05134 | 269 | cd05134, RasGAP_RASA3, Ras-GTPase Activating Domai | 3e-25 | |
| cd05134 | 269 | cd05134, RasGAP_RASA3, Ras-GTPase Activating Domai | 3e-25 | |
| cd05135 | 287 | cd05135, RasGAP_RASAL, Ras-GTPase Activating Domai | 6e-24 | |
| cd05135 | 287 | cd05135, RasGAP_RASAL, Ras-GTPase Activating Domai | 6e-24 | |
| cd05132 | 352 | cd05132, RasGAP_GAPA, Ras-GTPase Activating Domain | 5e-23 | |
| cd05132 | 352 | cd05132, RasGAP_GAPA, Ras-GTPase Activating Domain | 5e-23 | |
| cd05394 | 272 | cd05394, RasGAP_RASA2, Ras-GTPase Activating Domai | 9e-23 | |
| cd05394 | 272 | cd05394, RasGAP_RASA2, Ras-GTPase Activating Domai | 9e-23 | |
| cd05395 | 287 | cd05395, RasGAP_RASA4, Ras-GTPase Activating Domai | 3e-21 | |
| cd05395 | 287 | cd05395, RasGAP_RASA4, Ras-GTPase Activating Domai | 3e-21 | |
| cd12207 | 350 | cd12207, RasGAP_IQGAP3, Ras-GTPase Activating Doma | 2e-17 | |
| cd12207 | 350 | cd12207, RasGAP_IQGAP3, Ras-GTPase Activating Doma | 2e-17 | |
| smart00516 | 158 | smart00516, SEC14, Domain in homologues of a S | 2e-17 | |
| cd05131 | 359 | cd05131, RasGAP_IQGAP2, Ras-GTPase Activating Doma | 4e-13 | |
| cd05131 | 359 | cd05131, RasGAP_IQGAP2, Ras-GTPase Activating Doma | 4e-13 | |
| cd00170 | 157 | cd00170, SEC14, Sec14p-like lipid-binding domain | 6e-12 | |
| cd05133 | 380 | cd05133, RasGAP_IQGAP1, Ras-GTPase Activating Doma | 1e-10 | |
| cd05133 | 380 | cd05133, RasGAP_IQGAP1, Ras-GTPase Activating Doma | 1e-10 | |
| cd05129 | 365 | cd05129, RasGAP_RAP6, Ras-GTPase Activating Domain | 7e-05 | |
| cd05129 | 365 | cd05129, RasGAP_RAP6, Ras-GTPase Activating Domain | 7e-05 | |
| COG5261 | 1054 | COG5261, IQG1, Protein involved in regulation of c | 1e-04 | |
| COG5261 | 1054 | COG5261, IQG1, Protein involved in regulation of c | 1e-04 | |
| cd12206 | 359 | cd12206, RasGAP_IQGAP_related, Ras-GTPase Activati | 2e-04 | |
| cd12206 | 359 | cd12206, RasGAP_IQGAP_related, Ras-GTPase Activati | 2e-04 | |
| pfam13716 | 149 | pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain | 4e-04 | |
| pfam00650 | 152 | pfam00650, CRAL_TRIO, CRAL/TRIO domain | 0.002 |
| >gnl|CDD|213332 cd05130, RasGAP_Neurofibromin, Ras-GTPase Activating Domain of neurofibromin | Back alignment and domain information |
|---|
Score = 553 bits (1427), Expect = 0.0
Identities = 231/335 (68%), Positives = 274/335 (81%), Gaps = 5/335 (1%)
Query: 283 ETVLADRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLL 342
ETVLADRFE LV+LVT++ D GEL IAMALANVV SQMDELARV VTLFD+KH+L LL
Sbjct: 1 ETVLADRFERLVELVTMMGDDGELPIAMALANVVPCSQMDELARVLVTLFDSKHLLYQLL 60
Query: 343 WNMFYREVEVSDCMQTLFRGNSLGSKLMAFCFKIYGASYLQNLLEPLISPLLDKA-HVAF 401
WNMF +EVE++D MQTLFRGNSL SK+M FCFK+YGA+YLQ+LLEPL+ ++ + V++
Sbjct: 61 WNMFSKEVELADSMQTLFRGNSLASKIMTFCFKVYGATYLQSLLEPLLRTMITSSEWVSY 120
Query: 402 EVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQ 461
EVDP RL+ +EN+E N+R L+ T+K F AII S+D FPPQLRS+CHCLYQV+S RF
Sbjct: 121 EVDPTRLEGNENLEENQRNLLQLTEKFFHAIISSSDEFPPQLRSVCHCLYQVVSHRF--- 177
Query: 462 PQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFSK 521
P + +GAVG+ IFLRFINPAIV+P E GI+++ PP VKRGL LMSKILQNIANHV F+K
Sbjct: 178 PNSGLGAVGSAIFLRFINPAIVSPYEYGILDREPPPRVKRGLKLMSKILQNIANHVLFTK 237
Query: 522 EAHMIPFNDFLRAHFVIARQFFIQIASDCVTEDAGAHS-MSFISDTNVLALHRLLYNHQE 580
EAHM+PFNDFLR HF R+FF IASDC D + +SFI+D NVLALHRLL+N+QE
Sbjct: 238 EAHMLPFNDFLRNHFEAGRRFFSSIASDCGAVDGPSSKYLSFINDANVLALHRLLWNNQE 297
Query: 581 KIGDYLSSSRDHKVVGRRPFDKMATLLAYLGPPEH 615
KIG YL+SSRDHK VGRRPFDKMATLLAYLGPP H
Sbjct: 298 KIGQYLASSRDHKAVGRRPFDKMATLLAYLGPPGH 332
|
Neurofibromin is the product of the neurofibromatosis type 1 gene (NF1) and shares a region of similarity with catalytic domain of the mammalian p120RasGAP protein and an extended similarity with the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2. Neurofibromin has been shown to function as a GAP (GTPase-activating protein) which inhibits low molecular weight G proteins such as Ras by stimulating their intrinsic GTPase activity. NF1 is a common genetic disorder characterized by various symptoms ranging from predisposition for the development of tumors to learning disability or mental retardation. Loss of neurofibromin activity can be correlated to the increase in Ras-GTP concentration in neurofibromas of NF1 of patients, supporting the notion that unregulated Ras signaling may contribute to their development. Length = 332 |
| >gnl|CDD|213332 cd05130, RasGAP_Neurofibromin, Ras-GTPase Activating Domain of neurofibromin | Back alignment and domain information |
|---|
| >gnl|CDD|214617 smart00323, RasGAP, GTPase-activator protein for Ras-like GTPases | Back alignment and domain information |
|---|
| >gnl|CDD|214617 smart00323, RasGAP, GTPase-activator protein for Ras-like GTPases | Back alignment and domain information |
|---|
| >gnl|CDD|241467 cd13313, PH_NF1, Neurofibromin-1 Pleckstrin homology-like domain | Back alignment and domain information |
|---|
| >gnl|CDD|213341 cd05392, RasGAP_Neurofibromin_like, Ras-GTPase Activating Domain of proteins similar to neurofibromin | Back alignment and domain information |
|---|
| >gnl|CDD|213341 cd05392, RasGAP_Neurofibromin_like, Ras-GTPase Activating Domain of proteins similar to neurofibromin | Back alignment and domain information |
|---|
| >gnl|CDD|213328 cd04519, RasGAP, Ras GTPase Activating Domain | Back alignment and domain information |
|---|
| >gnl|CDD|213328 cd04519, RasGAP, Ras GTPase Activating Domain | Back alignment and domain information |
|---|
| >gnl|CDD|216024 pfam00616, RasGAP, GTPase-activator protein for Ras-like GTPase | Back alignment and domain information |
|---|
| >gnl|CDD|216024 pfam00616, RasGAP, GTPase-activator protein for Ras-like GTPase | Back alignment and domain information |
|---|
| >gnl|CDD|213330 cd05128, RasGAP_GAP1_like, Ras-GTPase Activating Domain of GAP1 and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|213330 cd05128, RasGAP_GAP1_like, Ras-GTPase Activating Domain of GAP1 and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|213339 cd05137, RasGAP_CLA2_BUD2, Ras-GTPase Activating Domain of CLA2/BUD2 | Back alignment and domain information |
|---|
| >gnl|CDD|213339 cd05137, RasGAP_CLA2_BUD2, Ras-GTPase Activating Domain of CLA2/BUD2 | Back alignment and domain information |
|---|
| >gnl|CDD|213340 cd05391, RasGAP_p120GAP, Ras-GTPase Activating Domain of p120 | Back alignment and domain information |
|---|
| >gnl|CDD|213340 cd05391, RasGAP_p120GAP, Ras-GTPase Activating Domain of p120 | Back alignment and domain information |
|---|
| >gnl|CDD|213338 cd05136, RasGAP_DAB2IP, Ras-GTPase Activating Domain of DAB2IP and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|213338 cd05136, RasGAP_DAB2IP, Ras-GTPase Activating Domain of DAB2IP and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain | Back alignment and domain information |
|---|
| >gnl|CDD|213329 cd05127, RasGAP_IQGAP_like, Ras-GTPase Activating Domain of IQ motif containing GTPase activating proteins | Back alignment and domain information |
|---|
| >gnl|CDD|213329 cd05127, RasGAP_IQGAP_like, Ras-GTPase Activating Domain of IQ motif containing GTPase activating proteins | Back alignment and domain information |
|---|
| >gnl|CDD|213336 cd05134, RasGAP_RASA3, Ras-GTPase Activating Domain of RASA3 | Back alignment and domain information |
|---|
| >gnl|CDD|213336 cd05134, RasGAP_RASA3, Ras-GTPase Activating Domain of RASA3 | Back alignment and domain information |
|---|
| >gnl|CDD|213337 cd05135, RasGAP_RASAL, Ras-GTPase Activating Domain of RASAL1 and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|213337 cd05135, RasGAP_RASAL, Ras-GTPase Activating Domain of RASAL1 and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|213334 cd05132, RasGAP_GAPA, Ras-GTPase Activating Domain of GAPA | Back alignment and domain information |
|---|
| >gnl|CDD|213334 cd05132, RasGAP_GAPA, Ras-GTPase Activating Domain of GAPA | Back alignment and domain information |
|---|
| >gnl|CDD|213342 cd05394, RasGAP_RASA2, Ras-GTPase Activating Domain of RASA2 | Back alignment and domain information |
|---|
| >gnl|CDD|213342 cd05394, RasGAP_RASA2, Ras-GTPase Activating Domain of RASA2 | Back alignment and domain information |
|---|
| >gnl|CDD|213343 cd05395, RasGAP_RASA4, Ras-GTPase Activating Domain of RASA4 | Back alignment and domain information |
|---|
| >gnl|CDD|213343 cd05395, RasGAP_RASA4, Ras-GTPase Activating Domain of RASA4 | Back alignment and domain information |
|---|
| >gnl|CDD|213346 cd12207, RasGAP_IQGAP3, Ras-GTPase Activating Domain of IQ motif containing GTPase activating protein 3 | Back alignment and domain information |
|---|
| >gnl|CDD|213346 cd12207, RasGAP_IQGAP3, Ras-GTPase Activating Domain of IQ motif containing GTPase activating protein 3 | Back alignment and domain information |
|---|
| >gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S | Back alignment and domain information |
|---|
| >gnl|CDD|213333 cd05131, RasGAP_IQGAP2, Ras-GTPase Activating Domain of IQ motif containing GTPase activating protein 2 | Back alignment and domain information |
|---|
| >gnl|CDD|213333 cd05131, RasGAP_IQGAP2, Ras-GTPase Activating Domain of IQ motif containing GTPase activating protein 2 | Back alignment and domain information |
|---|
| >gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|213335 cd05133, RasGAP_IQGAP1, Ras-GTPase Activating Domain of IQ motif containing GTPase activating protein 1 | Back alignment and domain information |
|---|
| >gnl|CDD|213335 cd05133, RasGAP_IQGAP1, Ras-GTPase Activating Domain of IQ motif containing GTPase activating protein 1 | Back alignment and domain information |
|---|
| >gnl|CDD|213331 cd05129, RasGAP_RAP6, Ras-GTPase Activating Domain of Rab5-activating protein 6 | Back alignment and domain information |
|---|
| >gnl|CDD|213331 cd05129, RasGAP_RAP6, Ras-GTPase Activating Domain of Rab5-activating protein 6 | Back alignment and domain information |
|---|
| >gnl|CDD|227586 COG5261, IQG1, Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|227586 COG5261, IQG1, Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|213345 cd12206, RasGAP_IQGAP_related, Ras-GTPase Activating Domain of proteins related to IQGAPs | Back alignment and domain information |
|---|
| >gnl|CDD|213345 cd12206, RasGAP_IQGAP_related, Ras-GTPase Activating Domain of proteins related to IQGAPs | Back alignment and domain information |
|---|
| >gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain | Back alignment and domain information |
|---|
| >gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1648 | |||
| KOG1826|consensus | 2724 | 100.0 | ||
| KOG1826|consensus | 2724 | 100.0 | ||
| cd05130 | 329 | RasGAP_Neurofibromin Neurofibromin is the product | 100.0 | |
| cd05130 | 329 | RasGAP_Neurofibromin Neurofibromin is the product | 100.0 | |
| cd05391 | 315 | RasGAP_p120GAP p120GAP is a negative regulator of | 100.0 | |
| cd05391 | 315 | RasGAP_p120GAP p120GAP is a negative regulator of | 100.0 | |
| cd05392 | 323 | RasGAP_Neurofibromin_like Neurofibromin-like prote | 100.0 | |
| cd05392 | 323 | RasGAP_Neurofibromin_like Neurofibromin-like prote | 100.0 | |
| cd05136 | 309 | RasGAP_DAB2IP The DAB2IP family of Ras GTPase-acti | 100.0 | |
| cd05136 | 309 | RasGAP_DAB2IP The DAB2IP family of Ras GTPase-acti | 100.0 | |
| cd05395 | 337 | RasGAP_RASA4 Ras GTPase activating-like 4 protein | 100.0 | |
| cd05134 | 310 | RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of | 100.0 | |
| cd05134 | 310 | RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of | 100.0 | |
| cd05395 | 337 | RasGAP_RASA4 Ras GTPase activating-like 4 protein | 100.0 | |
| cd05128 | 315 | RasGAP_GAP1_like The GAP1 family of Ras GTPase-act | 100.0 | |
| cd05394 | 313 | RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the | 100.0 | |
| cd05394 | 313 | RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the | 100.0 | |
| cd05128 | 315 | RasGAP_GAP1_like The GAP1 family of Ras GTPase-act | 100.0 | |
| cd05137 | 395 | RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-a | 100.0 | |
| cd05137 | 395 | RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-a | 100.0 | |
| smart00323 | 344 | RasGAP GTPase-activator protein for Ras-like GTPas | 100.0 | |
| cd05135 | 333 | RasGAP_RASAL Ras GTPase activating-like protein (R | 100.0 | |
| smart00323 | 344 | RasGAP GTPase-activator protein for Ras-like GTPas | 100.0 | |
| cd05135 | 333 | RasGAP_RASAL Ras GTPase activating-like protein (R | 100.0 | |
| cd05133 | 360 | RasGAP_IQGAP1 IQGAP1 is a homodimeric protein that | 100.0 | |
| cd05132 | 331 | RasGAP_GAPA GAPA is an IQGAP-related protein and i | 100.0 | |
| cd05133 | 360 | RasGAP_IQGAP1 IQGAP1 is a homodimeric protein that | 100.0 | |
| cd05132 | 331 | RasGAP_GAPA GAPA is an IQGAP-related protein and i | 100.0 | |
| cd05131 | 339 | RasGAP_IQGAP2 IQGAP2 is a member of the IQGAP fami | 100.0 | |
| cd05127 | 325 | RasGAP_IQGAP_related This family represents IQ mot | 100.0 | |
| cd05131 | 339 | RasGAP_IQGAP2 IQGAP2 is a member of the IQGAP fami | 100.0 | |
| cd05127 | 325 | RasGAP_IQGAP_related This family represents IQ mot | 100.0 | |
| cd04519 | 318 | RasGAP RasGAP: Ras-GTPase Activating Domain. RasGA | 100.0 | |
| cd04519 | 318 | RasGAP RasGAP: Ras-GTPase Activating Domain. RasGA | 100.0 | |
| cd05129 | 353 | RasGAP_RAP6 Rab5-activating protein 6 (RAP6) is an | 100.0 | |
| KOG2059|consensus | 800 | 100.0 | ||
| cd05129 | 353 | RasGAP_RAP6 Rab5-activating protein 6 (RAP6) is an | 100.0 | |
| KOG2059|consensus | 800 | 100.0 | ||
| PF00616 | 197 | RasGAP: GTPase-activator protein for Ras-like GTPa | 100.0 | |
| PF00616 | 197 | RasGAP: GTPase-activator protein for Ras-like GTPa | 100.0 | |
| KOG3508|consensus | 932 | 100.0 | ||
| KOG3508|consensus | 932 | 99.93 | ||
| KOG2128|consensus | 1401 | 99.92 | ||
| KOG2128|consensus | 1401 | 99.91 | ||
| PF13716 | 149 | CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q | 99.83 | |
| KOG4406|consensus | 467 | 99.64 | ||
| COG5261 | 1054 | IQG1 Protein involved in regulation of cellular mo | 99.6 | |
| COG5261 | 1054 | IQG1 Protein involved in regulation of cellular mo | 99.59 | |
| smart00516 | 158 | SEC14 Domain in homologues of a S. cerevisiae phos | 99.3 | |
| cd00170 | 157 | SEC14 Sec14p-like lipid-binding domain. Found in s | 99.22 | |
| KOG1470|consensus | 324 | 98.76 | ||
| PF00650 | 159 | CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T | 98.65 | |
| KOG1471|consensus | 317 | 97.07 | ||
| PF13716 | 149 | CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q | 93.83 | |
| PF14228 | 1120 | MOR2-PAG1_mid: Cell morphogenesis central region | 90.14 | |
| PF08337 | 539 | Plexin_cytopl: Plexin cytoplasmic RasGAP domain; I | 89.01 | |
| PF08337 | 539 | Plexin_cytopl: Plexin cytoplasmic RasGAP domain; I | 80.9 |
| >KOG1826|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-123 Score=1159.08 Aligned_cols=923 Identities=37% Similarity=0.466 Sum_probs=863.1
Q ss_pred hhhHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHHccccccccchhhHhHHHHHHHHHHhhcccCCCcCCCCCCCcch
Q psy14861 710 TVHAVHIKTKLYVRHIDMTVHAVHIKTKLCNLIEAMMRRRDDLAFRREMSFRNKLVDYLMDWVLGSANQVTIPPTPGESF 789 (1648)
Q Consensus 710 s~~~l~l~~~~y~~~l~~~~~~~rik~k~c~L~~~~~~~~~~l~~~~~~~~RN~~l~~~~~W~~~~~~~~~~~~~~~d~~ 789 (1648)
+...+.|+.+||++.||+++.++|||.|+|||+|+||++||+|+|++++++||++++++++|.+++.... ..+-.
T Consensus 956 sl~~m~Ln~vk~vrlLdi~V~~irvrskLcqL~Evmi~rredLtf~~em~f~nkl~e~L~d~vmgt~~~a-----al~~~ 1030 (2724)
T KOG1826|consen 956 SLFDLKLNNVKRVRLLDITVKFIRVRSKLCQLAEVMISRREDLTFPLEMGFVNKLFESLYDSVMGTEYLA-----ALNFH 1030 (2724)
T ss_pred hHHHHhhhhHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHhhcchhHHH-----hhhhH
Confidence 4556779999999999999999999999999999999999999999999999999999999999965432 22236
Q ss_pred hhhhchHHHHHHHHHHHHhcCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhcccchhhhhh-ccCcCccCccchh
Q psy14861 790 VSISRDLDQACMDAVAALLKGLPLQPEESDKGDLMEAKSSLFLKYFTLFMNLLNDCTDSQELDKEA-SRDRSKNDSSSNL 868 (1648)
Q Consensus 790 ~~l~rDLd~~c~kala~Ll~~LpL~p~~~~~~~~~~~ks~~F~~yF~~f~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~l 868 (1648)
++.-||||++||.|++.|+.++|+||.+++..+++++|+.+|.|||++|+++|++|.+.+..+... +++|++..++++|
T Consensus 1031 ~~~~rdlDQasme~i~~lla~lp~np~es~~v~l~~~k~~~~LkyftlfmniL~D~mdv~~kk~~~~~~~R~~ag~Lasl 1110 (2724)
T KOG1826|consen 1031 ERNIRDLDQASMENIEFLLAMLPDNPTESGSVALQRRKRNNILKYFTLFMNILLDSMDVIYKKWHTYTDFRNFAGILASL 1110 (2724)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCCCCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHh
Confidence 778899999999999999999999999999999999999999999999999999999887655533 3788889999999
Q ss_pred HHHHHHHHHHHHhccccccchhhccccccCChhhHHHHHHHHHHhccccccccchhhhHhhhhHHHHHHHHHhhhcCCch
Q psy14861 869 RSSIIEAMSNLLSANIDSGLMHSIALGYHQDLQTRAAFMEVLTKILQQGTEFNTLAETVLADRFEELVKLVTLISDKGEL 948 (1648)
Q Consensus 869 ~~~~i~alsnLl~aNid~gl~~~l~~gy~~d~~~R~aFl~v~~~il~~gt~f~~~~~~~~~~~ye~L~~Ll~~l~~~~~l 948 (1648)
|..+|+||+|+|++|||+|+.|+..+|||+|..||.+|++|++ |++||++|+.+.|++++|++|++++|++|+++.+|.
T Consensus 1111 ~~~tilamsn~L~~nids~i~~q~~~~~npdL~TR~~~~diLs-I~~~~~sFn~L~E~vlaD~~Eqii~lv~~i~dr~d~ 1189 (2724)
T KOG1826|consen 1111 SNKTILAMSNELKKNIDSFISKQCQWLNNPDLLTRENSRDILS-IELHPLSFNLLFELVLADLLEQIIKLVRTILDRDDD 1189 (2724)
T ss_pred hhcHHHHHHHHHhhhhhHHHHHhhccccCcchhhhhHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHhhccCCcHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHhchHHHHHHH
Q psy14861 949 SIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNSLGSKLMAFCFKIYGASYLQNLL 1028 (1648)
Q Consensus 949 ~l~~al~~v~~~~~~d~la~~Ll~lF~~~~~l~~Ll~~li~~EI~~t~~~~~LfR~NS~~Tkll~~y~r~~G~~YL~~~L 1028 (1648)
|+|++|+++++.+++|++|++++++|.++.++.++++++-..|+.-+.+.++.||+|++..|.+....+.+|.-|+.+..
T Consensus 1190 piaMaL~s~v~~~q~DeLarvlv~if~a~~~mskM~s~~e~~EV~l~i~~~~~~R~k~Lr~kid~Fk~~I~ke~d~e~Ls 1269 (2724)
T KOG1826|consen 1190 PIAMALFSTVIVDQIDELARVLVKIFKAIIQMSKMFSAMEHSEVNLGISNHFHFRNKWLRSKIDWFKFSIYKEYDFENLS 1269 (2724)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeeecccceeeccchHhhhhceeEEEeehhhhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred HHhHHHHHhc-------CCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHH-HHhhC
Q psy14861 1029 EPLISPLLDK-------AHVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQV-LSKRF 1100 (1648)
Q Consensus 1029 ~p~i~~ii~~-------~~~~~EiDP~ki~~~e~~~~N~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic~~i~~~-v~~kF 1100 (1648)
.|..+-++.+ .+..+|.||.++++.++.+++.+++...++++++.|+.+.++.|+..|+.|++.++. +.++|
T Consensus 1270 ePlkemll~e~de~~~~~h~~~~~~p~rI~ps~s~ee~~r~~~~~~g~~f~iIikg~ee~~~ld~~~v~~~~kvsvl~~~ 1349 (2724)
T KOG1826|consen 1270 EPLKEMLLSERDELREAKHYLTEVDPLRIPPSESTEEYIRSLYVEFGKLFSIIIKGLEESPDLDRSPVHLRHKVSVLNRN 1349 (2724)
T ss_pred hHHHHhhhhhhhhhhhhhceeeecccccCCCCCChHHHHHHHHHHHhHHHHHHHhccccCCcchhchHHHHHHHHHhccc
Confidence 9998877765 356799999999999999999999999999999999999999999999999999998 89999
Q ss_pred CCCCCccchhHHHHHHhHhhhhhccCCc----ccCCccC-CCChhhhhhhHHHHH--HHHHhhccCCCCC-ccccc-hhH
Q psy14861 1101 PLQPQNNIGAVGTVIFLRFINPAIVTPQ----EMGIINK-TVPPPVKRGLMLMSK--ILQNIANHVEFSK-EAHMI-PFN 1171 (1648)
Q Consensus 1101 P~~~e~~~~aVg~fiFLRFicPAIvsPe----~fgl~~~-~p~~~~rR~L~liaK--vLQnlAN~~~F~K-E~~m~-~lN 1171 (1648)
|.-...+...++--.+|||++|+||+|. .=|..+. ..+...-+++.+.++ |.|.++|...|++ +.+|. +++
T Consensus 1350 ~~ls~tnlg~T~v~~~Lkf~lpmIVtny~v~~gk~gLdKIknp~~sf~Gl~l~sp~~v~qli~N~ik~t~rsdilr~s~~ 1429 (2724)
T KOG1826|consen 1350 VILSLTNLGNTNVSKSLKFTLPMIVTNYNVKLGKGGLDKIKNPVLSFFGLELCSPIYVLQLIKNEIKFTKRSDILRRSLS 1429 (2724)
T ss_pred hhhhcccCCccchhhhhhhhccceecCCcccccccccccccCchHhhhhhhhCCHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9766666778888999999999999998 3333444 567889999999999 9999999999975 88888 999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCcCCCccccc--chhhHHHHHHHHHHHHHHHhhhhccCccccccCCCccchHHHHH
Q psy14861 1172 DFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFI--SDTNVLALHRLLYNHQEKIGDYLSSSRDHKVVGRRPFDKMATLL 1249 (1648)
Q Consensus 1172 ~fi~~~~~~~~~fl~~is~~~~~~~~~~~~~~~i--~~~~i~~LHr~L~~~~~~I~~~l~s~~~~~~~~~~~~D~L~~lL 1249 (1648)
.|...+...-..++.+....+...+...+...++ .+.++..+|+++++|+.++++++.+.++|.+++++++++....+
T Consensus 1430 ly~rs~~n~~fi~flq~~Lkgiidn~tf~sIe~l~pgdaNve~~~~Ll~K~~~rp~q~isls~d~~a~~~~d~~k~i~~~ 1509 (2724)
T KOG1826|consen 1430 LYLRSDGNAYFIFFLQPALKGIIDNHTFFSIEKLKPGDANVEALHRLLWKYMERPGQYISLSRDHFAVGLRDICKMIYLL 1509 (2724)
T ss_pred HHHHhcccHHHHHHHHHHHcCcccccccccccccCCCcccHHHHHHHHHHhhhcchhhhhcccccccccccCcchhHHHH
Confidence 9999888776666666666677776666666777 77889999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCccccccccccccccccCCCchhHHHHHHHHhhhcchhhhhccccCeEEecCCCCCCCcEEEEEeeecCCC
Q psy14861 1250 AYLGPPEHKPVESHMFFSSYARWSSIDMSNNNFEELMMKRNMQEKEEFKSIKSLNIFYQAGKSRNGHPVFYYIARRYKTF 1329 (1648)
Q Consensus 1250 ~~LG~P~~~~~~~~~~~~s~~~~~~~~~~~~~~~eFM~R~~~~~~ed~~~i~~~~ify~~g~skdG~PV~v~i~r~~~~~ 1329 (1648)
+..|+|+|++.+.+....+ +|..+++.++.++++|++|..+..|+|..+++..+||+.| ++.|.|++|++.+|....
T Consensus 1510 a~rglpEH~~iad~s~v~s--~~~~i~L~S~d~E~ii~~~~lheKe~fitL~~~i~~~~~G-sen~~k~~~lvs~r~fl~ 1586 (2724)
T KOG1826|consen 1510 AYRGLPEHAPIADGSFVFS--RFKEIALVSPDSENIIREHHLHEKEEFITLAKVIQFYANG-SENGLKNFYLVSRRKFLK 1586 (2724)
T ss_pred HhhCCCCCCccCCCCccee--hcccccccCccHHHHHHHHHHhhhhHHHHHHHHHHHHHhh-hhccCcchhhHhHHHHHh
Confidence 9999999998887643333 3899999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcccccCCeEEEEEcCCCCCCCcccHHHHHH-HHHHhhHHHHhcccEEEEEcCChHHHHHHHHhhc
Q psy14861 1330 ETNADLLIYHVILTMKPFCHAPYELVIDFTHASSENRFKTEFLQK-WFYVLSEVAYANIHAAYIYNCNSWVREYTKYHEK 1408 (1648)
Q Consensus 1330 ~~D~e~LiY~vl~tl~~~~~~~f~lV~D~T~f~~~n~p~~~~l~~-~~~llP~~~~kNl~~iYi~Npn~~~r~~~k~~~~ 1408 (1648)
.+.-+.|+|+...++++.++.+++++.|.|....++.+-.+++.+ |+.+.|..+..|-.++|.+|+|.|.|.+++.+++
T Consensus 1587 ~~s~~il~~l~~L~~kp~~hf~~evreD~T~~~~d~sfltsf~~~~~f~vr~~va~e~~~a~~di~~n~~lK~~~~l~dr 1666 (2724)
T KOG1826|consen 1587 ECSDDILIFLVELCLKPKVHFPGEVREDPTPIEFDYSFLTSFLYLKWFKVRPHVANENKHAVGDINCNSFLKETTKLHDR 1666 (2724)
T ss_pred hcCcHHHHHHHHHHcCccccCcceeeecCCcCCccHHHHHHHHhhhheeechhhhhhcccccccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998888877 9999999999999999999999999999999999
Q ss_pred cccccccCCceEEEcCChhhhhhcCCCCCcccCccccccccccccccccceeeccccceEEEEcCeEEEEeeceeeeccc
Q psy14861 1409 ILLPIFRNNKKLIFLDSPSKLNDYIDHNQQKLPGATLALDEDLKVFNNGLKLSHKDTKVAIKVGPTAVQITSLEKTKVLS 1488 (1648)
Q Consensus 1409 ~~s~~~k~~~ki~fi~sl~eL~~~i~~~~l~LP~~tl~l~~d~~v~~~~~~l~~~~~pV~lkIG~~~~qi~~~~~~~~~~ 1488 (1648)
++.++ |++++..|.+.+-.|.+|++-++..+|..|+..++|++| .++.+++++++.|++|||...+|+|+.++.++++
T Consensus 1667 iL~~L-~~~k~~~f~e~P~kl~e~id~~~q~~~~~t~~~~edlkv-snalk~s~~etkvsi~ig~~alt~Tnae~tkvl~ 1744 (2724)
T KOG1826|consen 1667 ILGQL-GQPKMEFFNEIPIKLREHIDDYPQLYEFMTRHAFEDLKV-SNALKPSVHETKVSIGIGIIALTMTNAEDTKVLI 1744 (2724)
T ss_pred HHhhc-CCCceeehhcCCHHHHHHHhhhhhhhhHHHHHHHhhccc-cccccchhhhhhhhcccCceEEEEeccccccchh
Confidence 99998 999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cceeeeeEEEcccceeeccccCCceEEEEecCCcceEEEEecccHHHHHHHHHHHHHhhcccCCCcccccccCCCCCchH
Q psy14861 1489 HSVLLNDIYYAHEIEEVCLVDDNQFTLSFVKDSQTQVLSFIHNECDSIVQAIIHIRNRWELSQSDSLTVHQKIRPKDVPG 1568 (1648)
Q Consensus 1489 ~~~~~ndV~~~sdi~~v~~~~~~eF~l~~~~~~~~~~l~f~S~~~~eIvk~i~~~~~r~~~~~~~~~~~~~~~rp~dvpg 1568 (1648)
+++.+||+|..++|+++|+.|+++||+.+.|.++ .++|.+..|.+|+|++-+.+.||+.+||.+...+.++||+||||
T Consensus 1745 ~Sv~~kdl~~~aeik~~cliD~tqFtl~ian~~~--~ls~~h~~c~~i~qs~~h~~~~~~vnqp~~~~~h~kirpknv~g 1822 (2724)
T KOG1826|consen 1745 DSVAYKDLQIYAEIKHCCLIDCTQFTLGIANMRK--FLSLVHGLCPEIAQSNCHGCYYFNVNQPFMDNYHKKIRPKNVYG 1822 (2724)
T ss_pred hhHHHHHHHHHhhcceEEEEEcCeeeeccccccc--hhHHHHhhhHHHhhhheeeeeeEecCCccccchhhccCcCCCcc
Confidence 9999999999999999999999999999999988 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHHHhhccCCCCcccccCCCC---CCCchHHHHhhHHHhhhccccChHHHHHHHh
Q psy14861 1569 TLLNMALLNLGSVDPNLRTAAYNLLCALTATFDLKIEGQLLETSDM---SNNNFEELMMKRNMQEKEEFKSIKSLNIFYQ 1645 (1648)
Q Consensus 1569 tLLn~allnL~s~d~~lR~aaYNLL~al~~~F~l~~~~~l~~~~~l---~n~t~fi~~is~~~a~~~~~~~~~~~~~~~~ 1645 (1648)
|+||+|++|+||+||.||.|||||+|||+.+|++.+++|++++.|+ .||+.|+..+|+.||+.||-+...++.--|+
T Consensus 1823 tll~~al~~~~nsDpsLrksa~nl~caLt~~fdlrve~~~i~~~~lcip~~n~v~lk~~~q~L~~n~ph~~leflee~~s 1902 (2724)
T KOG1826|consen 1823 TLLIPALFINSNSDPSLRKSAGNLGCALTVLFDLRVELHDITLYDLCIPRFNPVSLKIYFQVLHENPPHYKLEFLEELFS 1902 (2724)
T ss_pred hhhhHHHHhcCCCCHHHHHHHHhhcchheeeeeeeEeeeeeeeccccccCCCceeehhHHHHHhcCCCcceeehhhhhhh
Confidence 9999999999999999999999999999999999999999999999 9999999999999999999988887776554
|
|
| >KOG1826|consensus | Back alignment and domain information |
|---|
| >cd05130 RasGAP_Neurofibromin Neurofibromin is the product of the neurofibromatosis type 1 gene (NF1) and shares a region of similarity with catalytic domain of the mammalian p120RasGAP protein and an extended similarity with the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2 | Back alignment and domain information |
|---|
| >cd05130 RasGAP_Neurofibromin Neurofibromin is the product of the neurofibromatosis type 1 gene (NF1) and shares a region of similarity with catalytic domain of the mammalian p120RasGAP protein and an extended similarity with the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2 | Back alignment and domain information |
|---|
| >cd05391 RasGAP_p120GAP p120GAP is a negative regulator of Ras that stimulates hydrolysis of bound GTP to GDP | Back alignment and domain information |
|---|
| >cd05391 RasGAP_p120GAP p120GAP is a negative regulator of Ras that stimulates hydrolysis of bound GTP to GDP | Back alignment and domain information |
|---|
| >cd05392 RasGAP_Neurofibromin_like Neurofibromin-like proteins include the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2, the closest homolog of neurofibromin, which is responsible for the human autosomal dominant disease neurofibromatosis type I (NF1) | Back alignment and domain information |
|---|
| >cd05392 RasGAP_Neurofibromin_like Neurofibromin-like proteins include the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2, the closest homolog of neurofibromin, which is responsible for the human autosomal dominant disease neurofibromatosis type I (NF1) | Back alignment and domain information |
|---|
| >cd05136 RasGAP_DAB2IP The DAB2IP family of Ras GTPase-activating proteins includes DAB2IP, nGAP, and Syn GAP | Back alignment and domain information |
|---|
| >cd05136 RasGAP_DAB2IP The DAB2IP family of Ras GTPase-activating proteins includes DAB2IP, nGAP, and Syn GAP | Back alignment and domain information |
|---|
| >cd05395 RasGAP_RASA4 Ras GTPase activating-like 4 protein (RASAL4), also known as Ca2+ -promoted Ras inactivator (CAPRI), is a member of the GAP1 family | Back alignment and domain information |
|---|
| >cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4) | Back alignment and domain information |
|---|
| >cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4) | Back alignment and domain information |
|---|
| >cd05395 RasGAP_RASA4 Ras GTPase activating-like 4 protein (RASAL4), also known as Ca2+ -promoted Ras inactivator (CAPRI), is a member of the GAP1 family | Back alignment and domain information |
|---|
| >cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1 | Back alignment and domain information |
|---|
| >cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL | Back alignment and domain information |
|---|
| >cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL | Back alignment and domain information |
|---|
| >cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1 | Back alignment and domain information |
|---|
| >cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast | Back alignment and domain information |
|---|
| >cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast | Back alignment and domain information |
|---|
| >smart00323 RasGAP GTPase-activator protein for Ras-like GTPases | Back alignment and domain information |
|---|
| >cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras | Back alignment and domain information |
|---|
| >smart00323 RasGAP GTPase-activator protein for Ras-like GTPases | Back alignment and domain information |
|---|
| >cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras | Back alignment and domain information |
|---|
| >cd05133 RasGAP_IQGAP1 IQGAP1 is a homodimeric protein that is widely expressed among vertebrate cell types from early embryogenesis | Back alignment and domain information |
|---|
| >cd05132 RasGAP_GAPA GAPA is an IQGAP-related protein and is predicted to bind to small GTPases, which are yet to be identified | Back alignment and domain information |
|---|
| >cd05133 RasGAP_IQGAP1 IQGAP1 is a homodimeric protein that is widely expressed among vertebrate cell types from early embryogenesis | Back alignment and domain information |
|---|
| >cd05132 RasGAP_GAPA GAPA is an IQGAP-related protein and is predicted to bind to small GTPases, which are yet to be identified | Back alignment and domain information |
|---|
| >cd05131 RasGAP_IQGAP2 IQGAP2 is a member of the IQGAP family that contains a calponin-homology (CH) domain which binds F-actin, IQGAP-specific repeat, a single WW domain, four IQ motifs which mediate interactions with calmodulin, and a Ras-GTPase-activating protein (GAP)-related domain that binds Rho family GTPases | Back alignment and domain information |
|---|
| >cd05127 RasGAP_IQGAP_related This family represents IQ motif containing GTPase activating protein (IQGAP) which associated with the Ras GTP-binding protein | Back alignment and domain information |
|---|
| >cd05131 RasGAP_IQGAP2 IQGAP2 is a member of the IQGAP family that contains a calponin-homology (CH) domain which binds F-actin, IQGAP-specific repeat, a single WW domain, four IQ motifs which mediate interactions with calmodulin, and a Ras-GTPase-activating protein (GAP)-related domain that binds Rho family GTPases | Back alignment and domain information |
|---|
| >cd05127 RasGAP_IQGAP_related This family represents IQ motif containing GTPase activating protein (IQGAP) which associated with the Ras GTP-binding protein | Back alignment and domain information |
|---|
| >cd04519 RasGAP RasGAP: Ras-GTPase Activating Domain | Back alignment and domain information |
|---|
| >cd04519 RasGAP RasGAP: Ras-GTPase Activating Domain | Back alignment and domain information |
|---|
| >cd05129 RasGAP_RAP6 Rab5-activating protein 6 (RAP6) is an endosomal protein with a role in the regulation of receptor-mediated endocytosis | Back alignment and domain information |
|---|
| >KOG2059|consensus | Back alignment and domain information |
|---|
| >cd05129 RasGAP_RAP6 Rab5-activating protein 6 (RAP6) is an endosomal protein with a role in the regulation of receptor-mediated endocytosis | Back alignment and domain information |
|---|
| >KOG2059|consensus | Back alignment and domain information |
|---|
| >PF00616 RasGAP: GTPase-activator protein for Ras-like GTPase; InterPro: IPR001936 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP [] | Back alignment and domain information |
|---|
| >PF00616 RasGAP: GTPase-activator protein for Ras-like GTPase; InterPro: IPR001936 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP [] | Back alignment and domain information |
|---|
| >KOG3508|consensus | Back alignment and domain information |
|---|
| >KOG3508|consensus | Back alignment and domain information |
|---|
| >KOG2128|consensus | Back alignment and domain information |
|---|
| >KOG2128|consensus | Back alignment and domain information |
|---|
| >PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A | Back alignment and domain information |
|---|
| >KOG4406|consensus | Back alignment and domain information |
|---|
| >COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >smart00516 SEC14 Domain in homologues of a S | Back alignment and domain information |
|---|
| >cd00170 SEC14 Sec14p-like lipid-binding domain | Back alignment and domain information |
|---|
| >KOG1470|consensus | Back alignment and domain information |
|---|
| >PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle | Back alignment and domain information |
|---|
| >KOG1471|consensus | Back alignment and domain information |
|---|
| >PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A | Back alignment and domain information |
|---|
| >PF14228 MOR2-PAG1_mid: Cell morphogenesis central region | Back alignment and domain information |
|---|
| >PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e | Back alignment and domain information |
|---|
| >PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1648 | ||||
| 1nf1_A | 333 | The Gap Related Domain Of Neurofibromin Length = 33 | 1e-138 | ||
| 1nf1_A | 333 | The Gap Related Domain Of Neurofibromin Length = 33 | 1e-138 | ||
| 3p7z_A | 276 | Crystal Structure Of The Neurofibromin Sec14-Ph Mod | 1e-100 | ||
| 3p7z_A | 276 | Crystal Structure Of The Neurofibromin Sec14-Ph Mod | 5e-05 | ||
| 2e2x_A | 277 | Sec14 Homology Module Of Neurofibromin In Complex W | 1e-99 | ||
| 2e2x_A | 277 | Sec14 Homology Module Of Neurofibromin In Complex W | 3e-04 | ||
| 3peg_A | 290 | Crystal Structure Of Neurofibromins Sec14-Ph Module | 2e-97 | ||
| 3peg_A | 290 | Crystal Structure Of Neurofibromins Sec14-Ph Module | 5e-05 | ||
| 2d4q_A | 257 | Crystal Structure Of The Sec-Ph Domain Of The Human | 2e-95 | ||
| 3pg7_A | 256 | Crystal Structure Of The H. Sapiens Nf1 Sec-Ph Doma | 2e-93 | ||
| 1wq1_G | 334 | Ras-Rasgap Complex Length = 334 | 3e-23 | ||
| 1wq1_G | 334 | Ras-Rasgap Complex Length = 334 | 3e-23 | ||
| 3fay_A | 387 | Crystal Structure Of The Gap-Related Domain Of Iqga | 4e-10 | ||
| 3fay_A | 387 | Crystal Structure Of The Gap-Related Domain Of Iqga | 4e-10 | ||
| 3bxj_A | 483 | Crystal Structure Of The C2-Gap Fragment Of Syngap | 4e-10 | ||
| 3bxj_A | 483 | Crystal Structure Of The C2-Gap Fragment Of Syngap | 4e-10 |
| >pdb|1NF1|A Chain A, The Gap Related Domain Of Neurofibromin Length = 333 | Back alignment and structure |
|
| >pdb|1NF1|A Chain A, The Gap Related Domain Of Neurofibromin Length = 333 | Back alignment and structure |
| >pdb|3P7Z|A Chain A, Crystal Structure Of The Neurofibromin Sec14-Ph Module Containing The Patient Derived Mutation I1584v Length = 276 | Back alignment and structure |
| >pdb|3P7Z|A Chain A, Crystal Structure Of The Neurofibromin Sec14-Ph Module Containing The Patient Derived Mutation I1584v Length = 276 | Back alignment and structure |
| >pdb|2E2X|A Chain A, Sec14 Homology Module Of Neurofibromin In Complex With Phosphatitylethanolamine Length = 277 | Back alignment and structure |
| >pdb|2E2X|A Chain A, Sec14 Homology Module Of Neurofibromin In Complex With Phosphatitylethanolamine Length = 277 | Back alignment and structure |
| >pdb|2D4Q|A Chain A, Crystal Structure Of The Sec-Ph Domain Of The Human Neurofibromatosis Type 1 Protein Length = 257 | Back alignment and structure |
| >pdb|3PG7|A Chain A, Crystal Structure Of The H. Sapiens Nf1 Sec-Ph Domain (Del1750 Mutant) Length = 256 | Back alignment and structure |
| >pdb|1WQ1|G Chain G, Ras-Rasgap Complex Length = 334 | Back alignment and structure |
| >pdb|1WQ1|G Chain G, Ras-Rasgap Complex Length = 334 | Back alignment and structure |
| >pdb|3FAY|A Chain A, Crystal Structure Of The Gap-Related Domain Of Iqgap1 Length = 387 | Back alignment and structure |
| >pdb|3FAY|A Chain A, Crystal Structure Of The Gap-Related Domain Of Iqgap1 Length = 387 | Back alignment and structure |
| >pdb|3BXJ|A Chain A, Crystal Structure Of The C2-Gap Fragment Of Syngap Length = 483 | Back alignment and structure |
| >pdb|3BXJ|A Chain A, Crystal Structure Of The C2-Gap Fragment Of Syngap Length = 483 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1nf1_A NF1-333, protein (neurofibromin); type I neurofibromatosis, RAS, GAP, signal transduction, cancer, growth regulation, GTP hydrolysis; 2.50A {Homo sapiens} SCOP: a.116.1.2 Length = 333 | Back alignment and structure |
|---|
Score = 320 bits (821), Expect = 7e-99
Identities = 234/336 (69%), Positives = 282/336 (83%), Gaps = 6/336 (1%)
Query: 283 ETVLADRFEELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLL 342
ETVLADRFE LV+LVT++ D+GEL IAMALANVV SQ DELARV VTLFD++H+L LL
Sbjct: 1 ETVLADRFERLVELVTMMGDQGELPIAMALANVVPCSQWDELARVLVTLFDSRHLLYQLL 60
Query: 343 WNMFYREVEVSDCMQTLFRGNSLGSKLMAFCFKIYGASYLQNLLEPLISPLL---DKAHV 399
WNMF +EVE++D MQTLFRGNSL SK+M FCFK+YGA+YLQ LL+PL+ ++ D HV
Sbjct: 61 WNMFSKEVELADSMQTLFRGNSLASKIMTFCFKVYGATYLQKLLDPLLRIVITSSDWQHV 120
Query: 400 AFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFP 459
+FEVDP RL+PSE++E N+R L+ T+K F AII S+ FPPQLRS+CHCLYQV+S+RFP
Sbjct: 121 SFEVDPTRLEPSESLEENQRNLLQMTEKFFHAIISSSSEFPPQLRSVCHCLYQVVSQRFP 180
Query: 460 LQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEF 519
QN+IGAVG+ +FLRFINPAIV+P E GI++K PP ++RGL LMSKILQ+IANHV F
Sbjct: 181 ---QNSIGAVGSAMFLRFINPAIVSPYEAGILDKKPPPIIERGLKLMSKILQSIANHVLF 237
Query: 520 SKEAHMIPFNDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLYNHQ 579
+KE HM PFNDF++++F AR+FF+ IASDC T DA HS+SFISD NVLALHRLL+N+Q
Sbjct: 238 TKEEHMRPFNDFVKSNFDAARRFFLDIASDCPTSDAVNHSLSFISDGNVLALHRLLWNNQ 297
Query: 580 EKIGDYLSSSRDHKVVGRRPFDKMATLLAYLGPPEH 615
EKIG YLSS+RDHK VGRRPFDKMATLLAYLGPPEH
Sbjct: 298 EKIGQYLSSNRDHKAVGRRPFDKMATLLAYLGPPEH 333
|
| >1nf1_A NF1-333, protein (neurofibromin); type I neurofibromatosis, RAS, GAP, signal transduction, cancer, growth regulation, GTP hydrolysis; 2.50A {Homo sapiens} SCOP: a.116.1.2 Length = 333 | Back alignment and structure |
|---|
| >3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Length = 256 | Back alignment and structure |
|---|
| >3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Length = 256 | Back alignment and structure |
|---|
| >1wer_A P120GAP; GTPase activation, RAS, signal transduction, growth regulation, cancer; 1.60A {Homo sapiens} SCOP: a.116.1.2 PDB: 1wq1_G* Length = 334 | Back alignment and structure |
|---|
| >1wer_A P120GAP; GTPase activation, RAS, signal transduction, growth regulation, cancer; 1.60A {Homo sapiens} SCOP: a.116.1.2 PDB: 1wq1_G* Length = 334 | Back alignment and structure |
|---|
| >3fay_A P195, RAS GTPase-activating-like protein iqgap1; all alpha, calmodulin-binding, cell membrane, membrane, phosphoprotein, membrane protein; 2.20A {Homo sapiens} Length = 387 | Back alignment and structure |
|---|
| >3fay_A P195, RAS GTPase-activating-like protein iqgap1; all alpha, calmodulin-binding, cell membrane, membrane, phosphoprotein, membrane protein; 2.20A {Homo sapiens} Length = 387 | Back alignment and structure |
|---|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1648 | |||
| 3peg_A | 290 | Neurofibromin; SEC14 domain, pleckstrin homology d | 100.0 | |
| 1nf1_A | 333 | NF1-333, protein (neurofibromin); type I neurofibr | 100.0 | |
| 1nf1_A | 333 | NF1-333, protein (neurofibromin); type I neurofibr | 100.0 | |
| 3pg7_A | 256 | Neurofibromin; SEC lipid binding domain, PH domain | 100.0 | |
| 1wer_A | 334 | P120GAP; GTPase activation, RAS, signal transducti | 100.0 | |
| 1wer_A | 334 | P120GAP; GTPase activation, RAS, signal transducti | 100.0 | |
| 3fay_A | 387 | P195, RAS GTPase-activating-like protein iqgap1; a | 100.0 | |
| 3fay_A | 387 | P195, RAS GTPase-activating-like protein iqgap1; a | 100.0 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 100.0 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 100.0 | |
| 3peg_A | 290 | Neurofibromin; SEC14 domain, pleckstrin homology d | 99.06 | |
| 3hx3_A | 316 | Retinaldehyde-binding protein 1; lipid transfer pr | 98.82 | |
| 1r5l_A | 262 | Alpha-TTP, protein (alpha-tocopherol transfer prot | 98.81 | |
| 1aua_A | 296 | Phosphatidylinositol transfer protein SEC14P; phos | 98.65 | |
| 1olm_A | 403 | SEC14-like protein 2; lipid-binding protein, chole | 98.58 | |
| 3q8g_A | 320 | CRAL-TRIO domain-containing protein YKL091C; strin | 98.5 | |
| 3pg7_A | 256 | Neurofibromin; SEC lipid binding domain, PH domain | 98.15 | |
| 3hm6_X | 644 | Plexin-B1; structural genomics consortium, SGC, me | 92.95 | |
| 3ig3_A | 627 | Plxna3 protein; plexin intracellular GAP RBD inact | 89.88 | |
| 3hm6_X | 644 | Plexin-B1; structural genomics consortium, SGC, me | 89.1 | |
| 3ig3_A | 627 | Plxna3 protein; plexin intracellular GAP RBD inact | 83.7 |
| >1nf1_A NF1-333, protein (neurofibromin); type I neurofibromatosis, RAS, GAP, signal transduction, cancer, growth regulation, GTP hydrolysis; 2.50A {Homo sapiens} SCOP: a.116.1.2 | Back alignment and structure |
|---|
| >1nf1_A NF1-333, protein (neurofibromin); type I neurofibromatosis, RAS, GAP, signal transduction, cancer, growth regulation, GTP hydrolysis; 2.50A {Homo sapiens} SCOP: a.116.1.2 | Back alignment and structure |
|---|
| >3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* | Back alignment and structure |
|---|
| >1wer_A P120GAP; GTPase activation, RAS, signal transduction, growth regulation, cancer; 1.60A {Homo sapiens} SCOP: a.116.1.2 PDB: 1wq1_G* | Back alignment and structure |
|---|
| >1wer_A P120GAP; GTPase activation, RAS, signal transduction, growth regulation, cancer; 1.60A {Homo sapiens} SCOP: a.116.1.2 PDB: 1wq1_G* | Back alignment and structure |
|---|
| >3fay_A P195, RAS GTPase-activating-like protein iqgap1; all alpha, calmodulin-binding, cell membrane, membrane, phosphoprotein, membrane protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >3fay_A P195, RAS GTPase-activating-like protein iqgap1; all alpha, calmodulin-binding, cell membrane, membrane, phosphoprotein, membrane protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
| >3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* | Back alignment and structure |
|---|
| >1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* | Back alignment and structure |
|---|
| >1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 | Back alignment and structure |
|---|
| >1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* | Back alignment and structure |
|---|
| >3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* | Back alignment and structure |
|---|
| >3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* | Back alignment and structure |
|---|
| >3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X* | Back alignment and structure |
|---|
| >3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A* | Back alignment and structure |
|---|
| >3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X* | Back alignment and structure |
|---|
| >3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1648 | ||||
| d1nf1a_ | 324 | a.116.1.2 (A:) GAP related domain of neurofibromin | 1e-101 | |
| d1nf1a_ | 324 | a.116.1.2 (A:) GAP related domain of neurofibromin | 1e-101 | |
| d1wera_ | 324 | a.116.1.2 (A:) p120GAP domain {Human (Homo sapiens | 8e-71 | |
| d1wera_ | 324 | a.116.1.2 (A:) p120GAP domain {Human (Homo sapiens | 8e-71 | |
| d1auaa2 | 203 | c.13.1.1 (A:97-299) C-terminal domain of phosphati | 1e-05 | |
| d1olma3 | 199 | c.13.1.1 (A:76-274) Supernatant protein factor (SP | 0.002 |
| >d1nf1a_ a.116.1.2 (A:) GAP related domain of neurofibromin {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GTPase activation domain, GAP superfamily: GTPase activation domain, GAP family: p120GAP domain-like domain: GAP related domain of neurofibromin species: Human (Homo sapiens) [TaxId: 9606]
Score = 326 bits (837), Expect = e-101
Identities = 225/327 (68%), Positives = 273/327 (83%), Gaps = 6/327 (1%)
Query: 291 EELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREV 350
E LV+LVT++ D+GEL IAMALANVV SQ DELARV VTLFD++H+L LLWNMF +EV
Sbjct: 1 ERLVELVTMMGDQGELPIAMALANVVPCSQWDELARVLVTLFDSRHLLYQLLWNMFSKEV 60
Query: 351 EVSDCMQTLFRGNSLGSKLMAFCFKIYGASYLQNLLEPLISPLL---DKAHVAFEVDPAR 407
E++D MQTLFRGNSL SK+M FCFK+YGA+YLQ LL+PL+ ++ D HV+FEVDP R
Sbjct: 61 ELADSMQTLFRGNSLASKIMTFCFKVYGATYLQKLLDPLLRIVITSSDWQHVSFEVDPTR 120
Query: 408 LDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCHCLYQVLSKRFPLQPQNNIG 467
L+PSE++E N+R L+ T+K F AII S+ FPPQLRS+CHCLYQV+S+RFP QN+IG
Sbjct: 121 LEPSESLEENQRNLLQMTEKFFHAIISSSSEFPPQLRSVCHCLYQVVSQRFP---QNSIG 177
Query: 468 AVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFSKEAHMIP 527
AVG+ +FLRFINPAIV+P E GI++K PP ++RGL LMSKILQ+IANHV F+KE HM P
Sbjct: 178 AVGSAMFLRFINPAIVSPYEAGILDKKPPPIIERGLKLMSKILQSIANHVLFTKEEHMRP 237
Query: 528 FNDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLYNHQEKIGDYLS 587
FNDF++++F AR+FF+ IASDC T DA HS+SFISD NVLALHRLL+N+QEKIG YLS
Sbjct: 238 FNDFVKSNFDAARRFFLDIASDCPTSDAVNHSLSFISDGNVLALHRLLWNNQEKIGQYLS 297
Query: 588 SSRDHKVVGRRPFDKMATLLAYLGPPE 614
S+RDHK VGRRPFDKMATLLAYLGPPE
Sbjct: 298 SNRDHKAVGRRPFDKMATLLAYLGPPE 324
|
| >d1nf1a_ a.116.1.2 (A:) GAP related domain of neurofibromin {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
| >d1wera_ a.116.1.2 (A:) p120GAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
| >d1wera_ a.116.1.2 (A:) p120GAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
| >d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203 | Back information, alignment and structure |
|---|
| >d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1648 | |||
| d1nf1a_ | 324 | GAP related domain of neurofibromin {Human (Homo s | 100.0 | |
| d1nf1a_ | 324 | GAP related domain of neurofibromin {Human (Homo s | 100.0 | |
| d1wera_ | 324 | p120GAP domain {Human (Homo sapiens) [TaxId: 9606] | 100.0 | |
| d1wera_ | 324 | p120GAP domain {Human (Homo sapiens) [TaxId: 9606] | 100.0 | |
| d1auaa2 | 203 | C-terminal domain of phosphatidylinositol transfer | 98.8 | |
| d1r5la2 | 185 | Alpha-tocopherol transfer protein {Human (Homo sap | 98.76 | |
| d1olma3 | 199 | Supernatant protein factor (SPF), middle domain {H | 98.7 |
| >d1nf1a_ a.116.1.2 (A:) GAP related domain of neurofibromin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GTPase activation domain, GAP superfamily: GTPase activation domain, GAP family: p120GAP domain-like domain: GAP related domain of neurofibromin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.2e-59 Score=551.11 Aligned_cols=320 Identities=70% Similarity=1.148 Sum_probs=250.5
Q ss_pred HHHHHHHhhhcCCchHHHHHHHhhcCchhHHHHHHHHHHhhccCCcHHHHHHHHHHHHhhcCCCcccccccCchhHHHHH
Q psy14861 934 ELVKLVTLISDKGELSIAMALANVVSTSQMDELARVFVTLFDAKHMLPPLLWNMFYREVEVSDCMQTLFRGNSLGSKLMA 1013 (1648)
Q Consensus 934 ~L~~Ll~~l~~~~~l~l~~al~~v~~~~~~d~la~~Ll~lF~~~~~l~~Ll~~li~~EI~~t~~~~~LfR~NS~~Tkll~ 1013 (1648)
++++|++.+++.++++++.++|++||.+++|++|++|+++|.++|++++|++.+++.||+.+++++++|||||++||+++
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~l~~~~~~~~~d~~a~~Lv~~f~~~~~l~~ll~~li~~Ei~~~~~~~~lfR~Ns~~tk~~~ 81 (324)
T d1nf1a_ 2 RLVELVTMMGDQGELPIAMALANVVPCSQWDELARVLVTLFDSRHLLYQLLWNMFSKEVELADSMQTLFRGNSLASKIMT 81 (324)
T ss_dssp THHHHHHHHHTCTTSTTHHHHHTTSCGGGHHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSSSSSTTSTTCSCCTTHHHHH
T ss_pred hHHHHHHHhccCCcHHHHHHHHhhCChhhHHHHHHHHHHHHHHcChHHHHHHHHHHHHHhcCCChhhHHhCCcHHHHHHH
Confidence 56788887788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhchHHHHHHHHHhHHHHHhcC---CCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHH
Q psy14861 1014 FCFKIYGASYLQNLLEPLISPLLDKA---HVAFEVDPARLDPSENIENNRRELISWTKKVFDAIIDSADNFPPQLRSMCH 1090 (1648)
Q Consensus 1014 ~y~r~~G~~YL~~~L~p~i~~ii~~~---~~~~EiDP~ki~~~e~~~~N~~~L~~~~~~~l~~I~~S~~~~P~~lR~Ic~ 1090 (1648)
.|+|..|+.||+++|+|+|+++++++ +.++|+||.|+++++.+++|+++|++++++||++|++|++.+|+++|++|+
T Consensus 82 ~y~r~~g~~yL~~~L~p~i~~i~~~~~~~~~~~EvDp~k~~~~~~~~~n~~~L~~~~~~~~~~I~~s~~~~P~~lr~i~~ 161 (324)
T d1nf1a_ 82 FCFKVYGATYLQKLLDPLLRIVITSSDWQHVSFEVDPTRLEPSESLEENQRNLLQMTEKFFHAIISSSSEFPPQLRSVCH 161 (324)
T ss_dssp HHHHHHHTTHHHHSSSCC--------------------------CTTTTTTSTTTTHHHHHHHHHHTTTTCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCCCCCHHhcCchhhHHHHHHHHHHHHHHHHHHHHHhhhhCCHHHHHHHH
Confidence 99999999999999999999999864 358999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCCccchhHHHHHHhHhhhhhccCCcccCCccCCCChhhhhhhHHHHHHHHHhhccCCCCCccccchh
Q psy14861 1091 CLYQVLSKRFPLQPQNNIGAVGTVIFLRFINPAIVTPQEMGIINKTVPPPVKRGLMLMSKILQNIANHVEFSKEAHMIPF 1170 (1648)
Q Consensus 1091 ~i~~~v~~kFP~~~e~~~~aVg~fiFLRFicPAIvsPe~fgl~~~~p~~~~rR~L~liaKvLQnlAN~~~F~KE~~m~~l 1170 (1648)
++++.+.+||| +..+.+||+|+|+|||||||++|+.||+++..|++.+||+|+++||+||++||+..|+||+||.|+
T Consensus 162 ~i~~~~~~~fp---~~~~~~v~~fiflRfi~PAI~sP~~~gl~~~~~~~~~rr~L~~iaKvLQ~lan~~~f~ke~~m~~l 238 (324)
T d1nf1a_ 162 CLYQVVSQRFP---QNSIGAVGSAMFLRFINPAIVSPYEAGILDKKPPPIIERGLKLMSKILQSIANHVLFTKEEHMRPF 238 (324)
T ss_dssp HHHHHHTTTCC---SSCHHHHHHHHHHHTHHHHHHCTTCC--------CHHHHHHHTHHHHHHHHHHTCCCCSSTTSGGG
T ss_pred HHHHHHHHHCc---chHHHHHHHHHHHHHhCcccCCHHHcCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCCCcchhhH
Confidence 99999999999 456889999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCcCCCcccccchhhHHHHHHHHHHHHHHHhhhhccCccccccCCCccchHHHHHh
Q psy14861 1171 NDFLRAHFVIARQFFIQIASDCVTEDAGAHSMSFISDTNVLALHRLLYNHQEKIGDYLSSSRDHKVVGRRPFDKMATLLA 1250 (1648)
Q Consensus 1171 N~fi~~~~~~~~~fl~~is~~~~~~~~~~~~~~~i~~~~i~~LHr~L~~~~~~I~~~l~s~~~~~~~~~~~~D~L~~lL~ 1250 (1648)
|+|+.++.+++++|+.+++++++.++...+|..+++.+++..+|+++++|+++|++++.+.+++...++.++|+|+.+|+
T Consensus 239 n~fi~~~~~~~~~fl~~i~~~~~~~~~~~~~~~~i~~~ei~~lh~ll~~~~~~I~~~~~~~~~~~~~~~~~~d~L~~lL~ 318 (324)
T d1nf1a_ 239 NDFVKSNFDAARRFFLDIASDCPTSDAVNHSLSFISDGNVLALHRLLWNNQEKIGQYLSSNRDHKAVGRRPFDKMATLLA 318 (324)
T ss_dssp HHHHHHTHHHHHHHHHHTTC---------------------CC-CHHHHHTTHHHHSTTC---------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCccccCCCcccCCHHHHHHHHHHHHHHHHHHHHHHhhccchhhhcCCchhhHHHHHH
Confidence 99999999999999999998777766667788889999999999999999999999998888888889999999999999
Q ss_pred hcCCCC
Q psy14861 1251 YLGPPE 1256 (1648)
Q Consensus 1251 ~LG~P~ 1256 (1648)
+||||+
T Consensus 319 ~LG~p~ 324 (324)
T d1nf1a_ 319 YLGPPE 324 (324)
T ss_dssp TCCCCC
T ss_pred HcCCCC
Confidence 999995
|
| >d1nf1a_ a.116.1.2 (A:) GAP related domain of neurofibromin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wera_ a.116.1.2 (A:) p120GAP domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wera_ a.116.1.2 (A:) p120GAP domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|